Query 021121
Match_columns 317
No_of_seqs 706 out of 1621
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 07:46:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021121.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021121hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0277 Peroxisomal targeting 100.0 1.5E-54 3.4E-59 313.8 25.5 307 1-310 1-308 (311)
2 KOG0271 Notchless-like WD40 re 100.0 3.9E-53 8.4E-58 323.1 26.2 290 6-315 114-443 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 3.9E-53 8.4E-58 326.5 23.5 286 4-309 172-458 (459)
4 KOG0271 Notchless-like WD40 re 100.0 7.2E-52 1.6E-56 316.1 24.3 284 6-309 156-479 (480)
5 KOG0286 G-protein beta subunit 100.0 1.2E-47 2.6E-52 283.3 31.7 285 6-309 54-343 (343)
6 KOG0284 Polyadenylation factor 100.0 3.1E-47 6.7E-52 292.8 18.0 286 7-313 96-382 (464)
7 KOG0272 U4/U6 small nuclear ri 100.0 1.3E-46 2.9E-51 290.5 19.9 247 58-313 173-420 (459)
8 KOG0279 G protein beta subunit 100.0 2.7E-43 5.9E-48 258.7 31.7 288 6-312 14-314 (315)
9 KOG0273 Beta-transducin family 100.0 6.2E-44 1.3E-48 279.3 27.6 292 4-314 175-485 (524)
10 KOG0315 G-protein beta subunit 100.0 5E-43 1.1E-47 253.4 29.5 267 36-315 19-292 (311)
11 KOG0645 WD40 repeat protein [G 100.0 1.4E-42 3E-47 254.0 29.8 286 6-311 13-311 (312)
12 KOG0263 Transcription initiati 100.0 7.5E-44 1.6E-48 295.0 24.9 247 58-312 376-650 (707)
13 KOG0273 Beta-transducin family 100.0 1.5E-41 3.2E-46 266.0 30.1 282 6-311 234-523 (524)
14 KOG0295 WD40 repeat-containing 100.0 3.2E-42 6.9E-47 261.7 24.8 285 6-310 107-405 (406)
15 KOG0263 Transcription initiati 100.0 1.2E-41 2.5E-46 282.1 26.8 269 6-291 377-696 (707)
16 KOG0279 G protein beta subunit 100.0 6.4E-41 1.4E-45 246.2 27.0 250 57-314 12-265 (315)
17 KOG0265 U5 snRNP-specific prot 100.0 8.4E-41 1.8E-45 248.0 27.6 286 4-309 44-336 (338)
18 PLN00181 protein SPA1-RELATED; 100.0 1.1E-39 2.4E-44 294.6 40.4 289 6-310 482-792 (793)
19 cd00200 WD40 WD40 domain, foun 100.0 1.2E-39 2.6E-44 262.1 36.1 282 6-309 8-289 (289)
20 KOG0266 WD40 repeat-containing 100.0 3.2E-40 6.8E-45 278.7 31.5 285 7-311 159-454 (456)
21 KOG0285 Pleiotropic regulator 100.0 2.1E-40 4.5E-45 251.6 26.7 283 6-312 150-440 (460)
22 KOG0315 G-protein beta subunit 100.0 7E-40 1.5E-44 237.2 27.5 266 4-289 36-309 (311)
23 KOG0318 WD40 repeat stress pro 100.0 5.8E-39 1.2E-43 254.8 33.0 290 6-314 146-563 (603)
24 KOG0296 Angio-associated migra 100.0 2E-39 4.4E-44 246.6 28.9 284 5-311 62-398 (399)
25 KOG0291 WD40-repeat-containing 100.0 3.3E-39 7.1E-44 266.3 31.7 287 7-313 307-614 (893)
26 KOG0286 G-protein beta subunit 100.0 4.4E-39 9.5E-44 238.1 28.5 248 57-315 52-307 (343)
27 KOG0284 Polyadenylation factor 100.0 1.6E-41 3.6E-46 261.4 16.3 243 59-312 95-338 (464)
28 KOG0319 WD40-repeat-containing 100.0 6.2E-40 1.3E-44 269.8 26.3 289 6-312 322-620 (775)
29 KOG0276 Vesicle coat complex C 100.0 1.1E-39 2.3E-44 264.1 26.8 286 6-313 12-300 (794)
30 KOG0318 WD40 repeat stress pro 100.0 1.3E-38 2.8E-43 252.8 31.9 290 6-311 189-602 (603)
31 KOG0277 Peroxisomal targeting 100.0 4.7E-40 1E-44 238.7 19.7 252 3-266 56-308 (311)
32 KOG0265 U5 snRNP-specific prot 100.0 4.6E-39 1E-43 238.8 24.9 249 55-312 42-297 (338)
33 KOG0291 WD40-repeat-containing 100.0 3.6E-38 7.8E-43 260.2 32.4 284 7-313 265-552 (893)
34 KOG0313 Microtubule binding pr 100.0 9.1E-39 2E-43 244.2 26.8 288 3-311 101-418 (423)
35 KOG0285 Pleiotropic regulator 100.0 1.1E-39 2.5E-44 247.6 21.7 244 58-314 149-392 (460)
36 KOG0282 mRNA splicing factor [ 100.0 2E-40 4.3E-45 260.5 17.9 286 6-309 213-503 (503)
37 KOG0264 Nucleosome remodeling 100.0 2.3E-39 5E-44 252.8 23.2 260 52-311 116-404 (422)
38 KOG0293 WD40 repeat-containing 100.0 4.1E-39 8.9E-44 248.7 24.2 292 5-315 222-517 (519)
39 KOG0281 Beta-TrCP (transducin 100.0 1.8E-40 3.8E-45 251.4 16.0 274 6-314 196-480 (499)
40 KOG0310 Conserved WD40 repeat- 100.0 1.1E-38 2.4E-43 251.1 25.9 286 5-312 24-310 (487)
41 KOG0319 WD40-repeat-containing 100.0 2E-38 4.3E-43 261.0 26.1 293 6-313 146-579 (775)
42 KOG0295 WD40 repeat-containing 100.0 1.5E-38 3.3E-43 241.7 20.9 246 58-313 106-366 (406)
43 KOG0292 Vesicle coat complex C 100.0 6.8E-38 1.5E-42 262.8 26.8 291 3-315 4-325 (1202)
44 KOG0281 Beta-TrCP (transducin 100.0 2.1E-39 4.6E-44 245.6 14.1 232 59-313 196-430 (499)
45 KOG0276 Vesicle coat complex C 100.0 1E-37 2.3E-42 252.6 24.4 246 58-312 11-258 (794)
46 KOG0266 WD40 repeat-containing 100.0 5.9E-37 1.3E-41 258.9 29.8 247 59-313 158-411 (456)
47 KOG0305 Anaphase promoting com 100.0 5.8E-37 1.3E-41 249.6 28.3 286 2-312 172-462 (484)
48 KOG0316 Conserved WD40 repeat- 100.0 5.6E-37 1.2E-41 220.5 22.8 241 58-313 15-259 (307)
49 KOG0292 Vesicle coat complex C 100.0 1.2E-37 2.7E-42 261.3 22.6 246 59-313 8-282 (1202)
50 KOG0643 Translation initiation 100.0 1.6E-36 3.4E-41 222.0 24.6 249 54-312 4-318 (327)
51 KOG0645 WD40 repeat protein [G 100.0 1.1E-35 2.4E-40 217.9 28.8 244 57-313 11-263 (312)
52 PLN00181 protein SPA1-RELATED; 100.0 8.7E-36 1.9E-40 269.3 34.5 271 36-312 457-739 (793)
53 KOG0306 WD40-repeat-containing 100.0 5.8E-36 1.3E-40 247.1 29.0 284 6-314 372-667 (888)
54 KOG0275 Conserved WD40 repeat- 100.0 2.3E-37 4.9E-42 232.8 18.2 287 4-309 210-507 (508)
55 KOG0264 Nucleosome remodeling 100.0 3.2E-36 7E-41 235.3 23.0 258 4-268 121-405 (422)
56 cd00200 WD40 WD40 domain, foun 100.0 1.5E-34 3.2E-39 232.5 31.8 244 58-312 7-250 (289)
57 KOG0278 Serine/threonine kinas 100.0 1.4E-36 2.9E-41 220.4 17.4 286 5-313 12-299 (334)
58 KOG0316 Conserved WD40 repeat- 100.0 4.4E-35 9.6E-40 210.8 24.1 278 6-310 16-298 (307)
59 PTZ00421 coronin; Provisional 100.0 4.4E-34 9.6E-39 240.6 34.2 233 56-291 71-314 (493)
60 KOG0269 WD40 repeat-containing 100.0 5.3E-36 1.2E-40 248.0 21.3 294 7-310 39-339 (839)
61 KOG0282 mRNA splicing factor [ 100.0 1.1E-36 2.5E-41 239.4 16.3 250 57-313 211-464 (503)
62 KOG0310 Conserved WD40 repeat- 100.0 1.1E-35 2.3E-40 234.3 21.7 246 58-312 24-269 (487)
63 KOG0274 Cdc4 and related F-box 100.0 1.6E-34 3.5E-39 243.6 28.4 277 7-314 208-485 (537)
64 KOG1407 WD40 repeat protein [F 100.0 5E-34 1.1E-38 208.3 26.9 284 6-311 19-311 (313)
65 KOG0268 Sof1-like rRNA process 100.0 4.9E-36 1.1E-40 228.1 16.7 283 6-313 65-347 (433)
66 KOG0973 Histone transcription 100.0 1.4E-34 3.1E-39 248.0 27.1 296 6-313 12-357 (942)
67 KOG0283 WD40 repeat-containing 100.0 7.3E-35 1.6E-39 243.7 24.6 248 58-314 265-579 (712)
68 KOG0641 WD40 repeat protein [G 100.0 1.6E-32 3.4E-37 196.9 32.0 293 3-311 28-349 (350)
69 PTZ00420 coronin; Provisional 100.0 1.6E-32 3.4E-37 232.4 34.3 249 36-291 53-317 (568)
70 PTZ00421 coronin; Provisional 100.0 5.7E-33 1.2E-37 234.0 31.5 247 62-313 22-292 (493)
71 KOG0640 mRNA cleavage stimulat 100.0 5.4E-34 1.2E-38 213.2 21.6 292 5-311 110-426 (430)
72 KOG0647 mRNA export protein (c 100.0 6.9E-33 1.5E-37 206.2 25.5 276 6-302 26-315 (347)
73 KOG0313 Microtubule binding pr 100.0 2.5E-33 5.4E-38 214.6 22.7 251 51-314 96-379 (423)
74 KOG0772 Uncharacterized conser 100.0 2.9E-33 6.3E-38 222.2 23.2 289 6-308 166-484 (641)
75 KOG0270 WD40 repeat-containing 100.0 7.1E-33 1.5E-37 216.1 24.9 298 12-314 130-452 (463)
76 KOG0296 Angio-associated migra 100.0 1.5E-32 3.2E-37 209.3 24.4 249 54-315 58-360 (399)
77 PTZ00420 coronin; Provisional 100.0 9.9E-32 2.1E-36 227.6 32.0 227 79-313 50-295 (568)
78 KOG0289 mRNA splicing factor [ 100.0 5.4E-32 1.2E-36 210.7 27.2 281 9-310 221-505 (506)
79 KOG0288 WD40 repeat protein Ti 100.0 8.5E-34 1.8E-38 219.3 16.7 280 6-309 174-459 (459)
80 KOG1446 Histone H3 (Lys4) meth 100.0 3.8E-31 8.2E-36 198.4 29.1 245 59-315 13-266 (311)
81 KOG1446 Histone H3 (Lys4) meth 100.0 1.3E-30 2.7E-35 195.6 31.5 281 6-312 13-304 (311)
82 KOG1036 Mitotic spindle checkp 100.0 2.2E-31 4.8E-36 198.8 27.3 269 6-301 12-294 (323)
83 KOG1407 WD40 repeat protein [F 100.0 5E-32 1.1E-36 197.8 23.2 247 58-314 18-264 (313)
84 KOG0306 WD40-repeat-containing 100.0 1.8E-31 3.8E-36 220.8 29.0 288 3-312 316-623 (888)
85 KOG0299 U3 snoRNP-associated p 100.0 6.9E-32 1.5E-36 211.4 25.2 287 5-311 140-456 (479)
86 KOG0294 WD40 repeat-containing 100.0 2.2E-31 4.7E-36 199.4 26.6 270 22-313 3-283 (362)
87 KOG0278 Serine/threonine kinas 100.0 2.5E-33 5.4E-38 203.6 14.6 243 6-270 58-300 (334)
88 KOG0639 Transducin-like enhanc 100.0 2.3E-32 5.1E-37 216.7 20.5 289 2-311 414-704 (705)
89 KOG0299 U3 snoRNP-associated p 100.0 1.7E-31 3.6E-36 209.3 23.0 250 58-316 140-415 (479)
90 KOG0300 WD40 repeat-containing 100.0 1.1E-31 2.3E-36 201.8 20.9 291 6-314 147-479 (481)
91 KOG0647 mRNA export protein (c 100.0 5.3E-31 1.2E-35 196.2 24.2 248 58-315 25-285 (347)
92 KOG1332 Vesicle coat complex C 100.0 7.7E-32 1.7E-36 195.1 18.7 254 58-313 9-288 (299)
93 KOG0275 Conserved WD40 repeat- 100.0 2.8E-32 6.1E-37 205.5 17.2 251 55-313 208-469 (508)
94 KOG0283 WD40 repeat-containing 100.0 2.2E-31 4.7E-36 223.1 23.9 243 5-266 265-575 (712)
95 KOG0274 Cdc4 and related F-box 100.0 2.4E-31 5.3E-36 224.5 24.1 237 59-314 207-444 (537)
96 KOG0293 WD40 repeat-containing 100.0 2.3E-31 5E-36 206.1 21.6 248 58-314 222-473 (519)
97 KOG1408 WD40 repeat protein [F 100.0 8.1E-31 1.8E-35 216.2 25.9 288 11-312 328-714 (1080)
98 KOG0305 Anaphase promoting com 100.0 6E-31 1.3E-35 214.6 25.0 244 7-270 217-464 (484)
99 KOG0301 Phospholipase A2-activ 100.0 1.5E-30 3.2E-35 213.5 27.1 277 6-313 13-290 (745)
100 KOG0269 WD40 repeat-containing 100.0 3.4E-32 7.3E-37 225.6 17.6 252 59-313 38-298 (839)
101 KOG0641 WD40 repeat protein [G 100.0 9.6E-30 2.1E-34 182.7 27.6 256 50-313 22-305 (350)
102 KOG0308 Conserved WD40 repeat- 100.0 2E-31 4.3E-36 217.2 19.3 285 12-312 29-328 (735)
103 KOG0307 Vesicle coat complex C 100.0 2.5E-32 5.4E-37 235.5 14.7 303 10-313 9-329 (1049)
104 KOG0289 mRNA splicing factor [ 100.0 3.2E-30 6.9E-35 200.9 23.1 239 61-309 220-460 (506)
105 KOG4328 WD40 protein [Function 100.0 3.7E-30 8E-35 201.7 23.2 295 6-311 185-495 (498)
106 KOG0308 Conserved WD40 repeat- 100.0 5.1E-31 1.1E-35 214.8 18.7 249 59-313 20-287 (735)
107 KOG0302 Ribosome Assembly prot 100.0 2.6E-30 5.7E-35 198.0 21.1 253 55-309 146-436 (440)
108 KOG0772 Uncharacterized conser 100.0 1.9E-30 4.2E-35 206.3 20.9 255 53-312 160-446 (641)
109 KOG0300 WD40 repeat-containing 100.0 2.5E-30 5.4E-35 194.4 20.2 245 58-313 146-430 (481)
110 KOG2096 WD40 repeat protein [G 100.0 6E-29 1.3E-33 186.9 26.0 288 6-309 85-400 (420)
111 KOG0646 WD40 repeat protein [G 100.0 1.1E-29 2.3E-34 199.6 22.2 264 36-311 60-350 (476)
112 KOG2055 WD40 repeat protein [G 100.0 3.9E-29 8.5E-34 196.2 25.2 288 6-311 212-512 (514)
113 KOG1007 WD repeat protein TSSC 100.0 3.8E-29 8.3E-34 185.5 23.8 287 20-312 26-362 (370)
114 KOG0290 Conserved WD40 repeat- 100.0 5.6E-29 1.2E-33 184.7 24.5 298 3-307 40-361 (364)
115 KOG0268 Sof1-like rRNA process 100.0 6.2E-31 1.3E-35 200.5 14.5 242 57-313 63-304 (433)
116 KOG1036 Mitotic spindle checkp 100.0 7.1E-29 1.5E-33 185.5 24.7 243 58-315 11-266 (323)
117 KOG0302 Ribosome Assembly prot 100.0 2.5E-29 5.4E-34 192.7 22.1 253 4-265 148-436 (440)
118 KOG2106 Uncharacterized conser 100.0 6.4E-28 1.4E-32 191.6 30.7 281 6-312 199-522 (626)
119 KOG0640 mRNA cleavage stimulat 100.0 3.7E-30 8E-35 192.8 16.1 249 4-266 169-425 (430)
120 KOG0294 WD40 repeat-containing 100.0 2.6E-28 5.5E-33 183.1 25.1 239 6-269 42-283 (362)
121 KOG0321 WD40 repeat-containing 100.0 6.1E-29 1.3E-33 202.4 23.1 291 10-313 52-393 (720)
122 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 2.9E-27 6.3E-32 191.9 32.9 263 36-314 10-282 (300)
123 KOG0643 Translation initiation 100.0 1.3E-28 2.8E-33 180.7 21.5 206 101-312 5-221 (327)
124 KOG0267 Microtubule severing p 100.0 5.5E-31 1.2E-35 217.0 9.9 247 36-302 13-259 (825)
125 KOG0270 WD40 repeat-containing 100.0 9.2E-29 2E-33 193.2 20.7 255 11-274 177-456 (463)
126 KOG0288 WD40 repeat protein Ti 100.0 5.7E-30 1.2E-34 198.2 13.4 244 58-314 173-420 (459)
127 KOG1274 WD40 repeat protein [G 100.0 1.6E-27 3.4E-32 201.6 28.9 267 4-296 10-285 (933)
128 KOG0301 Phospholipase A2-activ 100.0 1.4E-28 3E-33 202.0 21.9 238 57-311 11-249 (745)
129 KOG1539 WD repeat protein [Gen 100.0 9.9E-28 2.1E-32 200.8 27.1 290 2-310 238-647 (910)
130 KOG2445 Nuclear pore complex c 100.0 1.9E-27 4.2E-32 177.8 25.5 253 58-313 11-320 (361)
131 KOG1332 Vesicle coat complex C 100.0 1.4E-28 3E-33 178.3 18.8 253 6-269 10-288 (299)
132 KOG1539 WD repeat protein [Gen 100.0 1.2E-27 2.6E-32 200.4 26.9 288 6-313 201-608 (910)
133 KOG0650 WD40 repeat nucleolar 100.0 4.7E-28 1E-32 196.0 23.5 285 6-308 399-732 (733)
134 KOG2106 Uncharacterized conser 100.0 6.9E-27 1.5E-31 185.7 29.7 288 6-315 153-481 (626)
135 KOG4283 Transcription-coupled 100.0 1.1E-27 2.3E-32 178.4 23.1 290 6-311 42-365 (397)
136 KOG0973 Histone transcription 100.0 7.1E-28 1.5E-32 207.2 25.1 251 5-270 67-358 (942)
137 KOG2048 WD40 repeat protein [G 100.0 9.2E-27 2E-31 190.9 30.2 284 6-312 24-320 (691)
138 KOG1034 Transcriptional repres 100.0 5.9E-28 1.3E-32 182.1 20.4 290 5-311 36-383 (385)
139 KOG0646 WD40 repeat protein [G 100.0 2.4E-27 5.3E-32 186.4 24.1 265 36-313 17-309 (476)
140 KOG4283 Transcription-coupled 100.0 3E-27 6.4E-32 176.0 23.0 252 58-311 41-334 (397)
141 KOG4378 Nuclear protein COP1 [ 100.0 6.3E-28 1.4E-32 191.4 20.2 272 38-316 13-285 (673)
142 KOG1273 WD40 repeat protein [G 100.0 3.9E-27 8.4E-32 176.9 22.9 247 58-315 22-326 (405)
143 KOG4378 Nuclear protein COP1 [ 100.0 2.4E-27 5.3E-32 188.1 22.6 268 8-291 35-304 (673)
144 KOG0307 Vesicle coat complex C 100.0 1.7E-28 3.7E-33 212.0 17.4 260 3-270 60-330 (1049)
145 KOG1063 RNA polymerase II elon 100.0 1.2E-26 2.6E-31 190.7 25.7 293 5-313 265-650 (764)
146 KOG0290 Conserved WD40 repeat- 100.0 1.1E-26 2.3E-31 172.7 22.5 262 51-315 35-322 (364)
147 KOG0639 Transducin-like enhanc 100.0 4.9E-28 1.1E-32 192.3 16.0 252 52-314 411-666 (705)
148 KOG2048 WD40 repeat protein [G 100.0 4.6E-26 1E-30 186.9 26.9 244 59-314 24-278 (691)
149 KOG4328 WD40 protein [Function 100.0 5E-27 1.1E-31 184.3 20.4 254 58-314 184-453 (498)
150 KOG1274 WD40 repeat protein [G 100.0 3.3E-26 7.2E-31 193.7 26.5 245 57-312 10-263 (933)
151 KOG1587 Cytoplasmic dynein int 100.0 1E-25 2.2E-30 189.2 28.9 303 6-313 179-518 (555)
152 KOG1445 Tumor-specific antigen 100.0 6.5E-27 1.4E-31 191.1 19.7 120 195-316 630-755 (1012)
153 KOG2445 Nuclear pore complex c 100.0 2.8E-25 6.1E-30 166.3 25.5 253 6-268 12-319 (361)
154 KOG0267 Microtubule severing p 100.0 2.3E-28 5.1E-33 201.6 9.2 222 75-312 6-227 (825)
155 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 1.4E-24 3E-29 176.2 31.3 261 5-290 28-300 (300)
156 KOG1009 Chromatin assembly com 100.0 1.4E-25 3.1E-30 173.7 23.3 294 6-312 12-373 (434)
157 KOG1063 RNA polymerase II elon 100.0 2.3E-25 4.9E-30 183.3 25.5 290 10-312 319-700 (764)
158 KOG2919 Guanine nucleotide-bin 99.9 2.7E-25 5.9E-30 167.6 22.8 274 11-301 53-360 (406)
159 KOG1408 WD40 repeat protein [F 99.9 2.8E-25 6.2E-30 183.7 20.2 248 4-268 456-714 (1080)
160 KOG1007 WD repeat protein TSSC 99.9 3.1E-24 6.7E-29 159.6 21.2 256 5-267 61-361 (370)
161 KOG2055 WD40 repeat protein [G 99.9 4E-24 8.7E-29 168.3 21.4 245 59-311 212-467 (514)
162 KOG0303 Actin-binding protein 99.9 9.2E-24 2E-28 163.3 22.5 253 36-291 56-320 (472)
163 KOG0321 WD40 repeat-containing 99.9 4.7E-24 1E-28 174.2 21.4 253 5-269 98-393 (720)
164 KOG2919 Guanine nucleotide-bin 99.9 1.2E-23 2.7E-28 158.7 21.9 244 62-312 51-328 (406)
165 KOG2096 WD40 repeat protein [G 99.9 7.1E-24 1.5E-28 159.8 18.8 207 99-312 79-309 (420)
166 KOG1188 WD40 repeat protein [G 99.9 2.3E-23 4.9E-28 158.3 20.7 275 21-310 41-345 (376)
167 KOG4227 WD40 repeat protein [G 99.9 8E-23 1.7E-27 158.4 22.2 293 4-314 53-390 (609)
168 COG2319 FOG: WD40 repeat [Gene 99.9 5.1E-21 1.1E-25 162.6 35.8 294 4-314 62-362 (466)
169 KOG1034 Transcriptional repres 99.9 2.6E-23 5.7E-28 157.2 18.9 252 58-315 36-341 (385)
170 KOG1587 Cytoplasmic dynein int 99.9 1.7E-22 3.8E-27 169.9 24.9 256 4-268 239-517 (555)
171 KOG1517 Guanine nucleotide bin 99.9 2.2E-22 4.8E-27 173.3 25.4 291 8-314 1065-1384(1387)
172 KOG0650 WD40 repeat nucleolar 99.9 7.6E-23 1.6E-27 166.1 20.4 244 56-310 396-679 (733)
173 KOG1538 Uncharacterized conser 99.9 1.1E-22 2.3E-27 167.6 21.1 274 8-311 13-293 (1081)
174 PRK11028 6-phosphogluconolacto 99.9 1.1E-20 2.5E-25 154.9 32.0 267 36-312 11-305 (330)
175 KOG0649 WD40 repeat protein [G 99.9 5.1E-21 1.1E-25 139.3 26.1 277 8-309 11-314 (325)
176 KOG1273 WD40 repeat protein [G 99.9 2.8E-22 6E-27 151.0 19.2 197 109-311 26-226 (405)
177 KOG0322 G-protein beta subunit 99.9 9E-23 1.9E-27 149.9 15.1 242 58-310 12-322 (323)
178 KOG0303 Actin-binding protein 99.9 8.2E-22 1.8E-26 152.6 20.7 212 97-314 72-297 (472)
179 KOG0771 Prolactin regulatory e 99.9 4E-21 8.7E-26 150.0 23.3 197 110-312 148-355 (398)
180 KOG0642 Cell-cycle nuclear pro 99.9 1E-22 2.2E-27 164.2 14.6 251 55-313 289-563 (577)
181 KOG1445 Tumor-specific antigen 99.9 1.9E-21 4.1E-26 159.5 20.4 254 36-291 602-870 (1012)
182 COG2319 FOG: WD40 repeat [Gene 99.9 3.6E-19 7.7E-24 151.3 35.4 285 9-313 111-402 (466)
183 KOG0649 WD40 repeat protein [G 99.9 1.1E-20 2.4E-25 137.5 21.9 234 62-312 12-275 (325)
184 KOG1523 Actin-related protein 99.9 7.9E-21 1.7E-25 143.5 20.7 243 59-308 9-275 (361)
185 KOG1963 WD40 repeat protein [G 99.9 8.8E-20 1.9E-24 154.6 29.1 287 10-312 163-539 (792)
186 KOG1524 WD40 repeat-containing 99.9 4.8E-21 1E-25 154.0 20.3 207 74-307 76-282 (737)
187 KOG4227 WD40 repeat protein [G 99.9 6.5E-21 1.4E-25 147.9 20.2 255 56-316 52-327 (609)
188 KOG1523 Actin-related protein 99.9 1.7E-20 3.7E-25 141.7 21.6 231 6-248 9-261 (361)
189 KOG1188 WD40 repeat protein [G 99.9 2.8E-21 6.1E-26 147.0 17.1 193 121-314 42-245 (376)
190 KOG2110 Uncharacterized conser 99.9 1.2E-19 2.6E-24 139.6 26.1 236 61-313 6-250 (391)
191 KOG0280 Uncharacterized conser 99.9 4E-20 8.8E-25 138.1 22.4 298 9-313 16-335 (339)
192 PRK11028 6-phosphogluconolacto 99.9 4.6E-19 1E-23 145.5 31.1 252 5-268 32-305 (330)
193 KOG0642 Cell-cycle nuclear pro 99.9 2.2E-21 4.9E-26 156.6 15.9 259 6-279 293-572 (577)
194 KOG0322 G-protein beta subunit 99.9 4.6E-21 1E-25 141.0 14.8 244 6-266 13-322 (323)
195 KOG1009 Chromatin assembly com 99.9 5.2E-20 1.1E-24 143.2 20.2 250 58-312 11-330 (434)
196 KOG1334 WD40 repeat protein [G 99.9 1.4E-20 3E-25 149.6 16.0 296 6-315 141-470 (559)
197 KOG1963 WD40 repeat protein [G 99.9 7.7E-19 1.7E-23 149.0 25.3 291 5-312 203-584 (792)
198 KOG0644 Uncharacterized conser 99.9 5.8E-21 1.3E-25 160.9 11.4 241 58-313 188-470 (1113)
199 KOG1310 WD40 repeat protein [G 99.8 3.1E-20 6.7E-25 149.9 14.9 216 98-315 42-307 (758)
200 KOG1517 Guanine nucleotide bin 99.8 5.8E-19 1.3E-23 152.6 23.3 246 62-314 1066-1336(1387)
201 KOG2139 WD40 repeat protein [G 99.8 6.1E-18 1.3E-22 130.1 25.8 287 7-311 98-431 (445)
202 PRK01742 tolB translocation pr 99.8 4.9E-19 1.1E-23 149.7 22.2 236 36-291 183-426 (429)
203 KOG1538 Uncharacterized conser 99.8 1.6E-19 3.5E-24 149.1 17.9 233 62-311 14-252 (1081)
204 KOG1524 WD40 repeat-containing 99.8 2.1E-19 4.6E-24 144.7 17.9 208 20-263 75-282 (737)
205 KOG0771 Prolactin regulatory e 99.8 8.4E-20 1.8E-24 142.7 15.2 198 64-269 148-356 (398)
206 KOG2110 Uncharacterized conser 99.8 1.1E-17 2.4E-22 128.9 26.4 197 10-225 49-250 (391)
207 KOG1272 WD40-repeat-containing 99.8 2.2E-20 4.9E-25 147.6 11.9 269 7-303 129-401 (545)
208 KOG2394 WD40 protein DMR-N9 [G 99.8 6.9E-19 1.5E-23 141.7 20.5 205 38-246 145-384 (636)
209 KOG3881 Uncharacterized conser 99.8 1.6E-18 3.4E-23 134.5 21.0 270 6-290 54-341 (412)
210 KOG3881 Uncharacterized conser 99.8 1E-18 2.2E-23 135.5 19.7 250 57-313 52-322 (412)
211 KOG2111 Uncharacterized conser 99.8 2.3E-17 4.9E-22 124.9 25.7 239 63-314 8-259 (346)
212 KOG1240 Protein kinase contain 99.8 8.3E-18 1.8E-22 147.5 25.9 295 4-309 1045-1431(1431)
213 KOG1310 WD40 repeat protein [G 99.8 2E-19 4.3E-24 145.3 14.5 214 57-275 47-311 (758)
214 KOG4497 Uncharacterized conser 99.8 5.8E-18 1.3E-22 128.8 20.3 277 12-312 13-392 (447)
215 KOG1272 WD40-repeat-containing 99.8 5.6E-20 1.2E-24 145.4 9.4 230 62-309 131-360 (545)
216 KOG2111 Uncharacterized conser 99.8 3.1E-16 6.8E-21 118.8 28.9 279 9-311 7-322 (346)
217 KOG2321 WD40 repeat protein [G 99.8 4.9E-17 1.1E-21 132.2 23.4 283 3-310 47-342 (703)
218 KOG1240 Protein kinase contain 99.8 5.3E-17 1.2E-21 142.6 23.9 256 56-315 1044-1338(1431)
219 KOG2139 WD40 repeat protein [G 99.8 5.7E-17 1.2E-21 124.9 21.0 228 61-301 99-365 (445)
220 KOG0644 Uncharacterized conser 99.8 1.4E-19 3.1E-24 152.7 6.9 208 98-313 182-428 (1113)
221 PRK01742 tolB translocation pr 99.8 4.5E-17 9.7E-22 137.8 21.7 222 6-247 202-426 (429)
222 PRK04922 tolB translocation pr 99.8 2.4E-16 5.2E-21 133.7 25.6 236 37-290 184-432 (433)
223 KOG2394 WD40 protein DMR-N9 [G 99.8 1.5E-17 3.3E-22 134.1 15.7 163 36-202 194-384 (636)
224 PF10282 Lactonase: Lactonase, 99.8 2.1E-14 4.5E-19 118.1 34.1 274 36-313 12-324 (345)
225 PRK03629 tolB translocation pr 99.8 1.6E-15 3.4E-20 128.2 28.2 235 37-290 179-427 (429)
226 PRK02889 tolB translocation pr 99.8 5.1E-16 1.1E-20 131.2 25.1 237 37-291 176-425 (427)
227 KOG4497 Uncharacterized conser 99.8 2.1E-15 4.5E-20 115.1 24.0 275 8-306 49-427 (447)
228 PF02239 Cytochrom_D1: Cytochr 99.8 2.2E-14 4.8E-19 117.9 31.8 276 20-314 5-350 (369)
229 KOG1354 Serine/threonine prote 99.8 3.9E-16 8.5E-21 119.5 19.1 250 7-269 25-361 (433)
230 PRK05137 tolB translocation pr 99.7 4.2E-15 9.1E-20 126.3 27.1 235 37-290 182-432 (435)
231 KOG2321 WD40 repeat protein [G 99.7 4E-16 8.6E-21 127.1 19.0 247 53-313 44-304 (703)
232 KOG0309 Conserved WD40 repeat- 99.7 2.5E-16 5.5E-21 131.9 14.9 298 4-312 21-340 (1081)
233 PRK03629 tolB translocation pr 99.7 2.4E-14 5.3E-19 121.0 26.8 216 84-313 180-408 (429)
234 PRK05137 tolB translocation pr 99.7 2.9E-14 6.3E-19 121.2 26.7 216 84-313 183-414 (435)
235 PF08662 eIF2A: Eukaryotic tra 99.7 5.1E-15 1.1E-19 110.8 18.8 152 64-224 9-180 (194)
236 KOG1409 Uncharacterized conser 99.7 1.6E-14 3.4E-19 110.9 20.4 244 8-268 25-271 (404)
237 KOG1334 WD40 repeat protein [G 99.7 4.7E-16 1E-20 124.2 12.3 256 6-270 184-469 (559)
238 PRK04922 tolB translocation pr 99.7 3.5E-14 7.5E-19 120.6 23.9 216 83-312 184-412 (433)
239 PRK00178 tolB translocation pr 99.7 1E-13 2.3E-18 117.9 26.8 236 38-290 180-427 (430)
240 PRK02889 tolB translocation pr 99.7 6.1E-14 1.3E-18 118.7 25.2 208 84-304 177-394 (427)
241 PF10282 Lactonase: Lactonase, 99.7 2.5E-12 5.5E-17 105.8 33.8 256 6-267 35-322 (345)
242 KOG1354 Serine/threonine prote 99.7 2.5E-14 5.5E-19 109.8 19.0 249 59-313 24-361 (433)
243 KOG0974 WD-repeat protein WDR6 99.7 1.2E-14 2.6E-19 126.1 19.3 193 112-313 93-290 (967)
244 KOG4547 WD40 repeat-containing 99.7 7.5E-14 1.6E-18 114.3 22.8 192 72-268 4-221 (541)
245 TIGR02800 propeller_TolB tol-p 99.7 1.5E-13 3.1E-18 116.9 25.9 235 36-288 169-416 (417)
246 PF02239 Cytochrom_D1: Cytochr 99.7 5.1E-13 1.1E-17 109.8 27.4 189 75-270 7-205 (369)
247 KOG0280 Uncharacterized conser 99.7 3.9E-14 8.6E-19 106.5 18.8 230 36-269 94-335 (339)
248 PF08662 eIF2A: Eukaryotic tra 99.7 3.4E-14 7.4E-19 106.4 18.8 151 153-313 9-181 (194)
249 PRK04792 tolB translocation pr 99.6 2.9E-13 6.3E-18 115.0 25.9 237 38-290 199-446 (448)
250 PRK01029 tolB translocation pr 99.6 5.8E-13 1.3E-17 112.3 25.1 241 37-291 165-425 (428)
251 KOG4547 WD40 repeat-containing 99.6 1.8E-13 3.8E-18 112.2 20.5 189 118-312 4-221 (541)
252 KOG2315 Predicted translation 99.6 2.2E-12 4.8E-17 105.3 26.4 275 7-313 34-392 (566)
253 COG2706 3-carboxymuconate cycl 99.6 2.1E-11 4.5E-16 94.9 29.0 272 36-313 15-323 (346)
254 TIGR02800 propeller_TolB tol-p 99.6 2.3E-12 5.1E-17 109.5 26.2 214 84-312 171-398 (417)
255 KOG2315 Predicted translation 99.6 1.5E-12 3.3E-17 106.2 21.9 255 11-291 129-411 (566)
256 PF04762 IKI3: IKI3 family; I 99.6 4.1E-11 8.9E-16 109.2 32.0 290 6-313 74-458 (928)
257 PRK00178 tolB translocation pr 99.6 7E-12 1.5E-16 106.8 25.4 215 84-312 180-407 (430)
258 KOG1409 Uncharacterized conser 99.6 8.5E-13 1.8E-17 101.5 17.4 246 58-313 22-272 (404)
259 PRK01029 tolB translocation pr 99.5 7.3E-12 1.6E-16 105.7 24.4 228 8-248 185-426 (428)
260 KOG0309 Conserved WD40 repeat- 99.5 1.2E-13 2.5E-18 116.3 12.3 251 8-268 68-340 (1081)
261 KOG2314 Translation initiation 99.5 8.8E-12 1.9E-16 101.9 22.2 279 10-312 213-574 (698)
262 COG2706 3-carboxymuconate cycl 99.5 6.7E-10 1.5E-14 86.6 31.5 257 5-270 37-324 (346)
263 KOG1064 RAVE (regulator of V-A 99.5 1.2E-13 2.7E-18 126.1 12.5 224 58-304 2206-2439(2439)
264 KOG4532 WD40-like repeat conta 99.5 1.8E-11 3.8E-16 91.4 21.3 266 36-315 51-335 (344)
265 PRK04792 tolB translocation pr 99.5 2.7E-11 5.8E-16 103.1 25.8 216 84-312 199-426 (448)
266 TIGR02658 TTQ_MADH_Hv methylam 99.5 2.4E-10 5.3E-15 92.2 29.5 260 37-313 27-332 (352)
267 KOG4714 Nucleoporin [Nuclear s 99.5 4.8E-13 1E-17 99.1 12.4 240 63-309 39-316 (319)
268 KOG0974 WD-repeat protein WDR6 99.5 1.5E-12 3.2E-17 113.4 17.3 183 74-268 100-289 (967)
269 KOG1064 RAVE (regulator of V-A 99.5 1.8E-13 4E-18 125.0 12.3 190 105-313 2207-2400(2439)
270 PLN02919 haloacid dehalogenase 99.5 1.1E-10 2.3E-15 108.4 30.5 242 11-270 571-891 (1057)
271 COG5170 CDC55 Serine/threonine 99.5 2.8E-12 6E-17 97.7 15.3 247 59-311 25-367 (460)
272 KOG2041 WD40 repeat protein [G 99.5 2.9E-11 6.4E-16 101.9 22.7 285 6-311 13-337 (1189)
273 PLN02919 haloacid dehalogenase 99.5 1.2E-10 2.7E-15 108.0 29.2 240 64-314 571-891 (1057)
274 PF04762 IKI3: IKI3 family; I 99.5 3.5E-10 7.5E-15 103.2 31.3 291 8-310 22-378 (928)
275 COG5354 Uncharacterized protei 99.5 3.2E-10 6.9E-15 92.0 26.3 282 6-313 31-397 (561)
276 KOG1912 WD40 repeat protein [G 99.5 3E-11 6.4E-16 102.6 20.5 286 9-312 17-365 (1062)
277 PRK04043 tolB translocation pr 99.4 8E-10 1.7E-14 92.8 27.2 214 38-268 170-401 (419)
278 COG5170 CDC55 Serine/threonine 99.4 1.5E-11 3.3E-16 93.7 14.3 249 6-267 25-367 (460)
279 COG4946 Uncharacterized protei 99.4 3.8E-09 8.1E-14 85.4 27.7 163 36-212 340-507 (668)
280 KOG2041 WD40 repeat protein [G 99.4 2.8E-11 6E-16 102.1 16.4 236 58-302 12-279 (1189)
281 KOG4714 Nucleoporin [Nuclear s 99.4 3.2E-12 6.9E-17 94.8 8.8 200 109-313 39-256 (319)
282 TIGR03300 assembly_YfgL outer 99.4 4.9E-09 1.1E-13 87.9 29.3 245 36-308 114-376 (377)
283 KOG1912 WD40 repeat protein [G 99.4 4E-10 8.6E-15 96.0 21.6 246 61-314 16-307 (1062)
284 KOG3914 WD repeat protein WDR4 99.3 4.1E-10 8.8E-15 88.7 19.0 165 12-189 67-232 (390)
285 PF15492 Nbas_N: Neuroblastoma 99.3 8.5E-09 1.8E-13 78.3 24.0 235 13-270 3-262 (282)
286 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.6E-08 3.4E-13 81.9 27.0 220 36-276 76-338 (352)
287 TIGR03300 assembly_YfgL outer 99.3 2.1E-08 4.5E-13 84.2 29.0 254 36-314 74-341 (377)
288 PF08450 SGL: SMP-30/Gluconola 99.3 9.5E-08 2.1E-12 75.2 30.5 222 12-256 4-245 (246)
289 KOG3914 WD repeat protein WDR4 99.3 1.2E-10 2.5E-15 91.7 13.5 154 153-314 66-226 (390)
290 KOG4532 WD40-like repeat conta 99.3 4.1E-09 8.8E-14 79.0 20.8 224 36-268 93-332 (344)
291 PF08450 SGL: SMP-30/Gluconola 99.3 6.5E-08 1.4E-12 76.1 29.0 219 65-299 4-244 (246)
292 PRK04043 tolB translocation pr 99.3 2.2E-08 4.7E-13 84.3 27.6 195 108-312 189-401 (419)
293 KOG4190 Uncharacterized conser 99.3 4.6E-11 9.9E-16 98.1 10.1 205 58-270 733-951 (1034)
294 KOG4190 Uncharacterized conser 99.2 2E-11 4.2E-16 100.2 6.4 202 99-309 728-946 (1034)
295 KOG1275 PAB-dependent poly(A) 99.2 6.3E-10 1.4E-14 96.4 15.6 181 74-265 148-340 (1118)
296 COG5354 Uncharacterized protei 99.2 1.5E-08 3.2E-13 82.6 21.4 236 12-270 136-398 (561)
297 PF15492 Nbas_N: Neuroblastoma 99.2 1.8E-07 3.9E-12 71.3 25.0 228 66-312 3-260 (282)
298 KOG1645 RING-finger-containing 99.1 6.9E-09 1.5E-13 82.1 16.9 246 58-312 191-462 (463)
299 KOG1275 PAB-dependent poly(A) 99.1 2.6E-09 5.7E-14 92.7 15.4 184 120-312 148-343 (1118)
300 COG4946 Uncharacterized protei 99.1 1.2E-07 2.5E-12 77.0 23.5 203 36-250 286-502 (668)
301 KOG2314 Translation initiation 99.1 4.4E-08 9.4E-13 80.8 21.0 235 63-312 213-526 (698)
302 PF07433 DUF1513: Protein of u 99.1 5.4E-07 1.2E-11 70.7 25.5 227 61-301 5-276 (305)
303 KOG0882 Cyclophilin-related pe 99.1 2.5E-09 5.5E-14 85.7 12.6 247 58-313 7-307 (558)
304 KOG2695 WD40 repeat protein [G 99.1 6.8E-10 1.5E-14 86.0 9.0 146 36-189 233-385 (425)
305 KOG2066 Vacuolar assembly/sort 99.1 2E-08 4.2E-13 86.3 18.4 185 59-268 38-234 (846)
306 KOG2695 WD40 repeat protein [G 99.1 4.3E-10 9.4E-15 87.0 7.8 142 166-313 228-378 (425)
307 PRK11138 outer membrane biogen 99.1 5.1E-07 1.1E-11 76.2 27.1 249 36-310 129-393 (394)
308 KOG1008 Uncharacterized conser 99.1 9.2E-11 2E-15 97.8 3.8 205 59-268 55-276 (783)
309 PF13360 PQQ_2: PQQ-like domai 99.1 1.5E-07 3.3E-12 73.6 21.5 215 82-315 2-234 (238)
310 KOG1645 RING-finger-containing 99.1 1.2E-08 2.6E-13 80.8 14.8 224 85-314 175-422 (463)
311 PF13360 PQQ_2: PQQ-like domai 99.0 1E-06 2.2E-11 69.0 23.6 219 36-272 2-235 (238)
312 KOG2114 Vacuolar assembly/sort 99.0 2.8E-07 6.1E-12 80.0 21.4 211 62-283 27-259 (933)
313 KOG1920 IkappaB kinase complex 99.0 1.1E-06 2.4E-11 79.3 25.3 240 59-310 67-364 (1265)
314 PRK11138 outer membrane biogen 98.9 4.5E-06 9.7E-11 70.5 27.2 220 75-313 122-355 (394)
315 KOG1920 IkappaB kinase complex 98.9 1.5E-06 3.2E-11 78.5 24.6 241 8-266 69-364 (1265)
316 PF11768 DUF3312: Protein of u 98.9 1.5E-07 3.2E-12 78.7 17.2 139 38-183 185-332 (545)
317 KOG3617 WD40 and TPR repeat-co 98.9 3E-07 6.4E-12 79.9 18.5 113 11-137 19-131 (1416)
318 PF11768 DUF3312: Protein of u 98.9 7.7E-08 1.7E-12 80.3 14.5 128 4-139 202-331 (545)
319 KOG2114 Vacuolar assembly/sort 98.9 2.6E-07 5.7E-12 80.2 18.0 196 113-314 30-246 (933)
320 PF07433 DUF1513: Protein of u 98.9 1.2E-05 2.5E-10 63.4 25.5 234 7-261 4-279 (305)
321 KOG0882 Cyclophilin-related pe 98.9 2.7E-08 5.9E-13 80.0 11.2 204 105-314 8-234 (558)
322 KOG2066 Vacuolar assembly/sort 98.9 1.1E-07 2.4E-12 81.9 14.6 185 106-311 39-233 (846)
323 KOG1008 Uncharacterized conser 98.9 8.3E-10 1.8E-14 92.2 1.6 203 106-312 56-276 (783)
324 PF00400 WD40: WD domain, G-be 98.8 1.3E-08 2.8E-13 54.7 5.5 37 272-309 3-39 (39)
325 PF00400 WD40: WD domain, G-be 98.8 1.6E-08 3.6E-13 54.3 5.9 38 140-178 2-39 (39)
326 KOG1832 HIV-1 Vpr-binding prot 98.8 4.6E-09 9.9E-14 91.2 4.7 196 97-312 1092-1292(1516)
327 PF00930 DPPIV_N: Dipeptidyl p 98.8 1.6E-05 3.6E-10 66.0 25.2 256 36-301 22-348 (353)
328 KOG3621 WD40 repeat-containing 98.8 7.3E-06 1.6E-10 70.1 22.1 138 36-181 54-198 (726)
329 KOG1832 HIV-1 Vpr-binding prot 98.8 7.7E-09 1.7E-13 89.8 4.6 190 58-270 1099-1294(1516)
330 KOG3617 WD40 and TPR repeat-co 98.7 1.1E-06 2.5E-11 76.5 17.0 110 63-180 18-131 (1416)
331 COG0823 TolB Periplasmic compo 98.7 6.2E-06 1.3E-10 69.3 19.7 191 59-258 191-391 (425)
332 PF04053 Coatomer_WDAD: Coatom 98.7 3.6E-05 7.8E-10 65.1 23.5 222 59-311 31-262 (443)
333 PF08596 Lgl_C: Lethal giant l 98.6 2.6E-05 5.7E-10 65.0 21.6 233 62-300 3-325 (395)
334 PF08553 VID27: VID27 cytoplas 98.6 2.4E-05 5.2E-10 69.9 21.1 139 121-266 495-646 (794)
335 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00013 2.7E-09 55.4 26.7 101 36-147 32-133 (354)
336 PRK02888 nitrous-oxide reducta 98.6 3.1E-05 6.8E-10 66.8 20.6 175 126-312 212-405 (635)
337 cd00216 PQQ_DH Dehydrogenases 98.6 0.00026 5.7E-09 61.5 26.3 226 74-315 111-428 (488)
338 COG0823 TolB Periplasmic compo 98.5 1.7E-05 3.6E-10 66.8 18.1 167 99-270 185-361 (425)
339 PF06977 SdiA-regulated: SdiA- 98.5 0.0002 4.3E-09 55.6 24.2 198 8-220 22-247 (248)
340 PF06977 SdiA-regulated: SdiA- 98.5 0.00021 4.6E-09 55.4 25.0 200 102-308 17-247 (248)
341 PF08596 Lgl_C: Lethal giant l 98.5 0.00028 6.1E-09 58.9 24.0 234 8-256 2-325 (395)
342 PF04053 Coatomer_WDAD: Coatom 98.5 0.00017 3.7E-09 61.1 22.3 223 6-269 31-264 (443)
343 PF03178 CPSF_A: CPSF A subuni 98.4 0.00033 7.1E-09 57.5 22.4 213 84-307 3-261 (321)
344 KOG3621 WD40 repeat-containing 98.4 1.3E-05 2.8E-10 68.6 14.2 155 61-224 34-198 (726)
345 PF03178 CPSF_A: CPSF A subuni 98.4 0.00067 1.5E-08 55.7 24.1 217 38-264 3-262 (321)
346 PF02897 Peptidase_S9_N: Proly 98.4 0.00095 2.1E-08 57.0 27.1 242 63-314 126-407 (414)
347 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00037 8.1E-09 58.0 22.6 224 82-313 22-315 (353)
348 PF04841 Vps16_N: Vps16, N-ter 98.4 0.001 2.2E-08 56.4 24.6 190 84-291 62-270 (410)
349 COG3391 Uncharacterized conser 98.4 0.00064 1.4E-08 57.1 23.1 202 62-270 75-286 (381)
350 COG3386 Gluconolactonase [Carb 98.3 0.0009 1.9E-08 53.9 23.1 210 36-258 46-277 (307)
351 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.00056 1.2E-08 52.0 19.4 143 114-262 18-160 (354)
352 cd00216 PQQ_DH Dehydrogenases 98.2 0.0027 5.8E-08 55.3 28.0 151 113-274 223-431 (488)
353 COG3391 Uncharacterized conser 98.2 0.0021 4.7E-08 54.0 28.3 242 62-313 32-285 (381)
354 PRK02888 nitrous-oxide reducta 98.2 0.00015 3.2E-09 62.8 16.7 104 115-224 285-405 (635)
355 KOG2395 Protein involved in va 98.2 8.6E-05 1.9E-09 61.9 13.9 146 116-267 343-500 (644)
356 KOG4640 Anaphase-promoting com 98.2 1.1E-05 2.4E-10 68.2 8.9 95 192-290 20-115 (665)
357 PF14783 BBS2_Mid: Ciliary BBS 98.2 0.00017 3.6E-09 47.6 12.5 102 63-175 2-109 (111)
358 PF06433 Me-amine-dh_H: Methyl 98.2 0.0022 4.8E-08 51.5 24.7 250 13-278 41-330 (342)
359 KOG4640 Anaphase-promoting com 98.2 1.4E-05 3E-10 67.6 9.1 95 149-246 20-115 (665)
360 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0038 8.1E-08 53.0 25.6 209 38-265 62-285 (410)
361 PF08553 VID27: VID27 cytoplas 98.1 0.00012 2.6E-09 65.5 14.6 146 161-311 492-647 (794)
362 PF06433 Me-amine-dh_H: Methyl 98.1 0.0031 6.7E-08 50.7 26.1 262 36-314 16-323 (342)
363 PF14783 BBS2_Mid: Ciliary BBS 98.1 0.00057 1.2E-08 45.1 13.5 103 10-133 2-110 (111)
364 PF14583 Pectate_lyase22: Olig 98.1 0.004 8.7E-08 51.1 21.1 200 67-270 42-275 (386)
365 KOG2444 WD40 repeat protein [G 98.1 6.5E-06 1.4E-10 61.0 4.8 145 163-312 31-178 (238)
366 PF14727 PHTB1_N: PTHB1 N-term 98.1 0.0051 1.1E-07 51.7 30.3 278 19-315 36-364 (418)
367 PF14583 Pectate_lyase22: Olig 97.9 0.008 1.7E-07 49.4 27.3 281 14-314 42-384 (386)
368 KOG2395 Protein involved in va 97.9 0.00063 1.4E-08 57.0 13.9 204 8-223 277-500 (644)
369 KOG4441 Proteins containing BT 97.9 0.0046 1E-07 54.7 20.0 219 37-270 301-549 (571)
370 PF00780 CNH: CNH domain; Int 97.9 0.009 2E-07 47.9 27.6 229 20-279 7-266 (275)
371 KOG2079 Vacuolar assembly/sort 97.8 0.0012 2.5E-08 60.0 15.1 100 74-179 100-202 (1206)
372 PF15390 DUF4613: Domain of un 97.8 0.0044 9.5E-08 53.0 17.4 155 105-268 18-187 (671)
373 KOG4441 Proteins containing BT 97.8 0.0059 1.3E-07 54.0 18.9 227 73-312 285-547 (571)
374 PF02897 Peptidase_S9_N: Proly 97.8 0.02 4.4E-07 48.9 29.0 248 11-270 127-407 (414)
375 smart00320 WD40 WD40 repeats. 97.7 0.00013 2.9E-09 38.1 5.3 38 140-178 3-40 (40)
376 COG3490 Uncharacterized protei 97.7 0.013 2.7E-07 45.7 21.0 240 7-265 67-346 (366)
377 PF05694 SBP56: 56kDa selenium 97.7 0.019 4.2E-07 47.8 24.7 231 38-270 38-345 (461)
378 COG3204 Uncharacterized protei 97.7 0.0042 9E-08 48.5 14.8 166 146-314 82-266 (316)
379 PRK13616 lipoprotein LpqB; Pro 97.7 0.019 4E-07 51.0 20.5 187 106-306 349-563 (591)
380 smart00320 WD40 WD40 repeats. 97.7 0.00011 2.4E-09 38.4 4.6 37 98-135 4-40 (40)
381 PF05694 SBP56: 56kDa selenium 97.7 0.025 5.4E-07 47.1 21.8 226 20-256 86-393 (461)
382 PF14870 PSII_BNR: Photosynthe 97.7 0.02 4.3E-07 46.0 29.9 278 5-308 14-301 (302)
383 PHA02713 hypothetical protein; 97.7 0.0061 1.3E-07 53.9 17.2 182 117-313 303-535 (557)
384 COG3386 Gluconolactonase [Carb 97.7 0.021 4.6E-07 46.1 23.2 222 67-302 31-277 (307)
385 KOG1897 Damage-specific DNA bi 97.6 0.047 1E-06 49.8 29.3 154 152-313 777-944 (1096)
386 PHA02713 hypothetical protein; 97.6 0.0082 1.8E-07 53.2 17.5 216 38-270 273-536 (557)
387 PRK13616 lipoprotein LpqB; Pro 97.6 0.024 5.1E-07 50.4 19.3 188 61-263 350-564 (591)
388 KOG4499 Ca2+-binding protein R 97.6 0.02 4.3E-07 43.3 16.0 143 60-210 108-271 (310)
389 PF00780 CNH: CNH domain; Int 97.5 0.035 7.5E-07 44.5 26.1 218 74-314 8-258 (275)
390 PF12894 Apc4_WD40: Anaphase-p 97.4 0.00085 1.8E-08 37.0 5.6 33 58-91 9-41 (47)
391 COG3204 Uncharacterized protei 97.4 0.039 8.4E-07 43.3 19.2 162 58-225 83-265 (316)
392 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.4 0.081 1.8E-06 46.6 27.6 56 130-185 272-338 (527)
393 KOG2079 Vacuolar assembly/sort 97.4 0.0011 2.5E-08 60.1 9.0 104 204-312 98-204 (1206)
394 KOG2444 WD40 repeat protein [G 97.4 0.00042 9.1E-09 51.7 5.0 104 74-180 71-177 (238)
395 PF10647 Gmad1: Lipoprotein Lp 97.3 0.052 1.1E-06 42.9 17.2 146 151-301 25-185 (253)
396 PF14655 RAB3GAP2_N: Rab3 GTPa 97.3 0.082 1.8E-06 44.6 23.7 79 236-316 307-403 (415)
397 KOG1897 Damage-specific DNA bi 97.3 0.14 3.1E-06 46.9 29.1 266 36-312 508-816 (1096)
398 KOG3630 Nuclear pore complex, 97.2 0.0086 1.9E-07 55.1 12.7 143 108-254 102-260 (1405)
399 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.2 0.14 3E-06 45.2 28.1 145 75-227 122-337 (527)
400 PRK10115 protease 2; Provision 97.2 0.19 4.2E-06 45.9 31.5 240 62-313 128-396 (686)
401 KOG4499 Ca2+-binding protein R 97.1 0.068 1.5E-06 40.5 15.0 149 13-169 114-273 (310)
402 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0026 5.6E-08 35.1 5.4 34 106-141 11-44 (47)
403 PF15390 DUF4613: Domain of un 97.1 0.16 3.5E-06 43.9 18.7 123 57-182 53-188 (671)
404 PF14870 PSII_BNR: Photosynthe 97.0 0.13 2.9E-06 41.4 22.7 230 8-264 62-301 (302)
405 COG3490 Uncharacterized protei 97.0 0.12 2.7E-06 40.4 23.8 236 59-309 66-346 (366)
406 PRK10115 protease 2; Provision 97.0 0.3 6.5E-06 44.7 25.1 198 107-312 127-345 (686)
407 COG5167 VID27 Protein involved 96.9 0.13 2.9E-06 43.6 16.0 145 115-267 476-632 (776)
408 PF05096 Glu_cyclase_2: Glutam 96.9 0.15 3.2E-06 39.9 23.8 191 54-257 36-251 (264)
409 PHA03098 kelch-like protein; P 96.9 0.15 3.3E-06 45.3 17.3 182 74-270 296-514 (534)
410 KOG3630 Nuclear pore complex, 96.8 0.025 5.3E-07 52.3 11.9 148 60-210 100-260 (1405)
411 PF10168 Nup88: Nuclear pore c 96.8 0.4 8.6E-06 43.8 21.6 76 107-183 85-182 (717)
412 COG5276 Uncharacterized conser 96.8 0.18 4E-06 39.7 27.0 260 36-311 105-369 (370)
413 PHA03098 kelch-like protein; P 96.7 0.18 4E-06 44.7 16.6 179 121-313 297-513 (534)
414 PF05096 Glu_cyclase_2: Glutam 96.7 0.21 4.5E-06 39.1 22.9 182 12-212 49-250 (264)
415 PF07995 GSDH: Glucose / Sorbo 96.6 0.31 6.6E-06 40.3 22.7 237 62-306 3-330 (331)
416 TIGR02604 Piru_Ver_Nterm putat 96.6 0.35 7.6E-06 40.6 22.5 153 8-169 14-202 (367)
417 PHA02790 Kelch-like protein; P 96.6 0.27 5.8E-06 43.0 16.4 177 121-313 274-472 (480)
418 KOG2377 Uncharacterized conser 96.5 0.17 3.7E-06 42.4 13.6 133 153-291 26-164 (657)
419 PF14727 PHTB1_N: PTHB1 N-term 96.5 0.47 1E-05 40.3 26.5 152 70-223 34-204 (418)
420 PF07995 GSDH: Glucose / Sorbo 96.4 0.42 9.2E-06 39.5 26.3 239 9-261 3-329 (331)
421 PF08728 CRT10: CRT10; InterP 96.3 0.65 1.4E-05 41.9 17.0 116 62-179 102-245 (717)
422 TIGR02604 Piru_Ver_Nterm putat 96.1 0.69 1.5E-05 38.9 16.5 140 107-254 14-200 (367)
423 PF10313 DUF2415: Uncharacteri 96.1 0.042 9.1E-07 29.4 5.5 32 150-181 1-34 (43)
424 PF08728 CRT10: CRT10; InterP 96.1 0.33 7E-06 43.7 13.9 122 8-136 101-245 (717)
425 PF10313 DUF2415: Uncharacteri 96.0 0.045 9.9E-07 29.3 5.3 33 237-269 1-35 (43)
426 PF10168 Nup88: Nuclear pore c 96.0 1.3 2.8E-05 40.6 19.0 80 5-93 82-181 (717)
427 PHA02790 Kelch-like protein; P 95.9 0.89 1.9E-05 39.8 16.2 179 74-270 273-473 (480)
428 PF12234 Rav1p_C: RAVE protein 95.9 0.41 8.9E-06 42.6 13.9 112 195-311 32-156 (631)
429 PRK13684 Ycf48-like protein; P 95.9 0.81 1.8E-05 37.9 28.8 151 149-311 172-331 (334)
430 PF10647 Gmad1: Lipoprotein Lp 95.8 0.71 1.5E-05 36.5 21.3 150 108-263 25-192 (253)
431 KOG2377 Uncharacterized conser 95.8 0.99 2.2E-05 38.1 19.5 141 36-181 42-186 (657)
432 PF12234 Rav1p_C: RAVE protein 95.8 0.44 9.5E-06 42.5 13.5 105 20-136 40-155 (631)
433 KOG1900 Nuclear pore complex, 95.8 0.26 5.6E-06 46.7 12.5 153 153-313 82-274 (1311)
434 COG5167 VID27 Protein involved 95.8 0.57 1.2E-05 40.1 13.4 150 155-312 472-633 (776)
435 KOG2247 WD40 repeat-containing 95.7 0.00094 2E-08 55.5 -2.5 144 107-258 35-179 (615)
436 KOG1916 Nuclear protein, conta 95.5 0.0042 9.2E-08 55.6 0.3 79 36-119 152-237 (1283)
437 KOG2280 Vacuolar assembly/sort 95.4 1.9 4.1E-05 38.8 18.7 197 61-270 44-249 (829)
438 PF14655 RAB3GAP2_N: Rab3 GTPa 95.4 0.37 8.1E-06 40.8 11.4 86 103-189 304-407 (415)
439 COG3823 Glutamine cyclotransfe 95.3 0.87 1.9E-05 34.2 13.9 174 74-256 57-248 (262)
440 COG3823 Glutamine cyclotransfe 95.3 0.9 1.9E-05 34.1 12.6 173 121-299 58-247 (262)
441 PF02333 Phytase: Phytase; In 95.2 1.6 3.4E-05 36.5 21.0 191 20-226 67-293 (381)
442 KOG1898 Splicing factor 3b, su 95.1 2.9 6.3E-05 39.3 28.3 105 20-134 549-668 (1205)
443 PF14761 HPS3_N: Hermansky-Pud 95.1 1 2.2E-05 34.0 15.2 135 36-179 37-213 (215)
444 TIGR03547 muta_rot_YjhT mutatr 95.0 1.8 3.8E-05 36.1 21.9 12 129-140 168-179 (346)
445 TIGR03074 PQQ_membr_DH membran 95.0 3 6.5E-05 38.7 22.2 192 121-314 196-480 (764)
446 KOG2247 WD40 repeat-containing 95.0 0.0028 6.1E-08 52.8 -2.1 146 63-219 37-184 (615)
447 PRK14131 N-acetylneuraminic ac 94.9 2 4.4E-05 36.2 20.6 12 129-140 189-200 (376)
448 PF14781 BBS2_N: Ciliary BBSom 94.8 0.89 1.9E-05 31.5 13.6 115 66-184 4-129 (136)
449 KOG1916 Nuclear protein, conta 94.7 0.025 5.4E-07 51.0 2.8 179 127-310 109-322 (1283)
450 PF14761 HPS3_N: Hermansky-Pud 94.7 1.4 3E-05 33.4 16.0 141 163-311 29-214 (215)
451 KOG2280 Vacuolar assembly/sort 94.7 3.2 7E-05 37.5 18.7 199 38-248 65-271 (829)
452 TIGR03548 mutarot_permut cycli 94.7 2.1 4.5E-05 35.3 19.3 102 121-226 75-197 (323)
453 KOG1900 Nuclear pore complex, 94.6 2.6 5.7E-05 40.5 15.3 157 105-269 77-274 (1311)
454 TIGR03074 PQQ_membr_DH membran 94.6 3.8 8.3E-05 38.1 23.6 150 121-272 262-482 (764)
455 PF12657 TFIIIC_delta: Transcr 94.6 0.44 9.6E-06 35.2 8.7 32 107-138 86-122 (173)
456 PF12768 Rax2: Cortical protei 94.3 2.3 5E-05 34.1 13.5 116 129-246 16-146 (281)
457 COG4590 ABC-type uncharacteriz 94.3 0.29 6.3E-06 41.1 7.7 166 97-270 211-389 (733)
458 PRK14131 N-acetylneuraminic ac 94.2 3.1 6.7E-05 35.2 19.1 10 173-182 190-199 (376)
459 PF07676 PD40: WD40-like Beta 94.0 0.36 7.8E-06 25.2 5.4 30 235-264 7-38 (39)
460 PF07569 Hira: TUP1-like enhan 93.9 0.78 1.7E-05 35.3 9.2 80 1-92 6-96 (219)
461 KOG4460 Nuclear pore complex, 93.8 1.1 2.5E-05 38.5 10.3 75 238-313 105-200 (741)
462 PRK13684 Ycf48-like protein; P 93.7 3.5 7.6E-05 34.2 23.6 150 106-265 172-329 (334)
463 PF07569 Hira: TUP1-like enhan 93.7 0.59 1.3E-05 36.0 8.1 66 244-312 18-96 (219)
464 COG5276 Uncharacterized conser 93.6 3.1 6.7E-05 33.2 26.0 161 54-227 80-245 (370)
465 TIGR02276 beta_rpt_yvtn 40-res 93.4 0.46 1E-05 25.2 5.3 41 116-157 1-41 (42)
466 PF12657 TFIIIC_delta: Transcr 93.3 1.2 2.6E-05 32.9 9.0 32 193-224 86-122 (173)
467 TIGR03547 muta_rot_YjhT mutatr 93.0 4.7 0.0001 33.6 20.9 41 172-214 168-210 (346)
468 KOG1983 Tomosyn and related SN 92.9 4.8 0.0001 38.7 14.1 36 55-91 30-65 (993)
469 PF11715 Nup160: Nucleoporin N 92.7 0.94 2E-05 40.5 9.2 73 73-145 158-256 (547)
470 KOG1898 Splicing factor 3b, su 92.5 9.7 0.00021 36.1 18.4 173 130-312 854-1049(1205)
471 TIGR03548 mutarot_permut cycli 92.4 5.5 0.00012 32.8 17.2 104 162-270 73-197 (323)
472 COG4590 ABC-type uncharacteriz 92.4 1.1 2.4E-05 37.8 8.2 166 9-188 222-394 (733)
473 COG4257 Vgb Streptogramin lyas 91.9 5.3 0.00011 31.6 19.1 201 59-270 60-265 (353)
474 COG3292 Predicted periplasmic 91.5 9.3 0.0002 33.6 16.4 274 6-306 163-442 (671)
475 PF12768 Rax2: Cortical protei 91.4 6.4 0.00014 31.6 12.1 116 82-202 15-146 (281)
476 PLN02153 epithiospecifier prot 91.3 7.7 0.00017 32.3 17.2 62 162-225 86-169 (341)
477 TIGR02276 beta_rpt_yvtn 40-res 91.1 1.1 2.3E-05 23.7 5.0 32 159-190 1-32 (42)
478 PLN00033 photosystem II stabil 91.1 8.8 0.00019 32.7 31.0 146 152-308 241-396 (398)
479 KOG4460 Nuclear pore complex, 90.8 11 0.00023 33.0 12.4 77 108-185 105-203 (741)
480 PF14781 BBS2_N: Ciliary BBSom 90.5 4.4 9.5E-05 28.2 14.3 117 14-143 5-131 (136)
481 PF10395 Utp8: Utp8 family; I 90.2 14 0.00031 33.5 23.7 202 58-270 69-308 (670)
482 TIGR03118 PEPCTERM_chp_1 conse 90.0 9 0.00019 30.9 20.3 222 63-290 25-307 (336)
483 KOG1983 Tomosyn and related SN 89.7 17 0.00038 35.2 14.4 25 245-270 243-267 (993)
484 PF07676 PD40: WD40-like Beta 89.7 1.5 3.2E-05 22.8 4.6 30 105-134 7-38 (39)
485 PF08954 DUF1900: Domain of un 89.7 2.3 5E-05 29.8 6.7 60 5-71 8-67 (136)
486 TIGR03118 PEPCTERM_chp_1 conse 89.1 11 0.00023 30.6 24.6 226 10-246 25-307 (336)
487 PF11635 Med16: Mediator compl 89.0 20 0.00043 33.6 21.5 67 150-218 260-345 (753)
488 PF09826 Beta_propel: Beta pro 88.8 17 0.00036 32.4 19.8 177 129-312 304-519 (521)
489 PF10214 Rrn6: RNA polymerase 88.8 21 0.00046 33.6 24.1 167 5-181 77-277 (765)
490 PF10214 Rrn6: RNA polymerase 88.7 21 0.00047 33.6 26.4 162 104-268 77-277 (765)
491 PF10433 MMS1_N: Mono-function 88.6 17 0.00037 32.2 22.9 218 9-246 257-503 (504)
492 PLN02153 epithiospecifier prot 88.3 14 0.0003 30.8 19.0 51 172-225 217-286 (341)
493 PF02333 Phytase: Phytase; In 88.2 15 0.00032 31.0 24.3 188 121-313 70-292 (381)
494 PF10433 MMS1_N: Mono-function 88.2 18 0.00039 32.1 26.3 251 20-290 222-503 (504)
495 PF11715 Nup160: Nucleoporin N 87.8 4.5 9.7E-05 36.2 9.0 32 62-93 216-250 (547)
496 PLN02193 nitrile-specifier pro 87.2 20 0.00044 31.5 18.0 144 74-226 230-413 (470)
497 COG5290 IkappaB kinase complex 86.6 27 0.00058 32.4 14.1 236 1-264 70-364 (1243)
498 KOG1896 mRNA cleavage and poly 86.3 8.8 0.00019 36.9 9.8 115 6-137 1096-1213(1366)
499 TIGR02171 Fb_sc_TIGR02171 Fibr 86.1 13 0.00028 35.0 10.7 90 163-253 320-415 (912)
500 COG5308 NUP170 Nuclear pore co 85.7 32 0.0007 32.4 15.1 138 126-269 99-277 (1263)
No 1
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-54 Score=313.79 Aligned_cols=307 Identities=53% Similarity=0.969 Sum_probs=286.7
Q ss_pred CCceecC-cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEE
Q 021121 1 MPVFKTP-FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAA 79 (317)
Q Consensus 1 ~~~~~~~-~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 79 (317)
|+++..+ ..-+++.|||..++++++++.+.|+..+.|++.|.++.... .+.+...++..+.+..++|++..++.++++
T Consensus 1 m~~~~tpgf~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~-gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a 79 (311)
T KOG0277|consen 1 MQTHTTPGFHGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPK-GIQECQSYDTEDGLFDVAWSENHENQVIAA 79 (311)
T ss_pred CcceecCCcccceeEecccccchhheeehhhcccccCceEEEEecCCCC-CeEEEEeeecccceeEeeecCCCcceEEEE
Confidence 6777765 78899999999999999999999999999999999997333 377888889999999999999988999999
Q ss_pred EcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEec
Q 021121 80 VADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP 159 (317)
Q Consensus 80 ~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 159 (317)
+.||++++||+. ....++..++.|..+|.++.|++..+..+++++.|++|++|+...++.+.++.+|...|....|+|
T Consensus 80 ~GDGSLrl~d~~--~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp 157 (311)
T KOG0277|consen 80 SGDGSLRLFDLT--MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSP 157 (311)
T ss_pred ecCceEEEeccC--CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCC
Confidence 999999999965 345789999999999999999998887899999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCce
Q 021121 160 RHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAV 239 (317)
Q Consensus 160 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v 239 (317)
..++++++++.|+.+++||++.......+..|...+.++.|+..+.++++||+.|+.|+.||+++.+.++..+.+|+-.|
T Consensus 158 ~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AV 237 (311)
T KOG0277|consen 158 HIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAV 237 (311)
T ss_pred CCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEE
Confidence 99999999999999999999987777778999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121 240 RKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ 310 (317)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~ 310 (317)
+.++|||....+|++++.|-+++|||...+...+...+.|...+.++.|++..+.++|+++.|+.++||+.
T Consensus 238 Rkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 238 RKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 99999999888999999999999999998887888999999999999999987889999999999999984
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-53 Score=323.06 Aligned_cols=290 Identities=25% Similarity=0.373 Sum_probs=259.4
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
|..+|.|++|+| ++..+++++. |.++++||+....+ .....+|...|.|++|+||| ..||+|+.||+|
T Consensus 114 H~e~Vl~~~fsp--~g~~l~tGsG------D~TvR~WD~~TeTp---~~t~KgH~~WVlcvawsPDg-k~iASG~~dg~I 181 (480)
T KOG0271|consen 114 HGEAVLSVQFSP--TGSRLVTGSG------DTTVRLWDLDTETP---LFTCKGHKNWVLCVAWSPDG-KKIASGSKDGSI 181 (480)
T ss_pred CCCcEEEEEecC--CCceEEecCC------CceEEeeccCCCCc---ceeecCCccEEEEEEECCCc-chhhccccCCeE
Confidence 788999999999 6777777764 89999999998764 22334799999999999999 699999999999
Q ss_pred EEEEeCCCCCCCCceeeccCCcceEEEEEec-----CCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecC
Q 021121 86 KIYDTALPPTANPIRSLHEHTREVHSADYNP-----TRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR 160 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (317)
++||.+++ ......+.+|+..|++++|.| ..+ +|++++.||.|+|||+..++++..+.+|+.+|+|+.|--
T Consensus 182 ~lwdpktg--~~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG- 257 (480)
T KOG0271|consen 182 RLWDPKTG--QQIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG- 257 (480)
T ss_pred EEecCCCC--CcccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC-
Confidence 99998866 245567899999999999975 344 899999999999999999999999999999999999974
Q ss_pred CCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEec-----------CC------------------------CC
Q 021121 161 HSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWN-----------KY------------------------DD 205 (317)
Q Consensus 161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~-----------~~------------------------~~ 205 (317)
..++++++.|++|++|+...+.....+++|...|+.++.+ |. .+
T Consensus 258 -~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~ 336 (480)
T KOG0271|consen 258 -EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSG 336 (480)
T ss_pred -CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCc
Confidence 5799999999999999999999999999999999999876 20 23
Q ss_pred cEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEe
Q 021121 206 CLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVG 285 (317)
Q Consensus 206 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~ 285 (317)
..+++|+.|.++.+|+....++++....+|..-|+.+.|||+++ ++++++.|..|++||-++++ .+..+++|-++|+.
T Consensus 337 erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r-~IASaSFDkSVkLW~g~tGk-~lasfRGHv~~VYq 414 (480)
T KOG0271|consen 337 ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGR-YIASASFDKSVKLWDGRTGK-FLASFRGHVAAVYQ 414 (480)
T ss_pred ceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCcc-EEEEeecccceeeeeCCCcc-hhhhhhhccceeEE
Confidence 35999999999999999988888999999999999999999999 79999999999999999997 67899999999999
Q ss_pred EEEEeccCCeEEEeecCCcEEEEecCCCCC
Q 021121 286 VDMSVLVEGLLASTGWDELVYVWQQGMDPR 315 (317)
Q Consensus 286 ~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~ 315 (317)
++|+.| .++|++|+.|.++++|++.+...
T Consensus 415 vawsaD-sRLlVS~SkDsTLKvw~V~tkKl 443 (480)
T KOG0271|consen 415 VAWSAD-SRLLVSGSKDSTLKVWDVRTKKL 443 (480)
T ss_pred EEeccC-ccEEEEcCCCceEEEEEeeeeee
Confidence 999998 88999999999999999987643
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.9e-53 Score=326.54 Aligned_cols=286 Identities=23% Similarity=0.385 Sum_probs=263.1
Q ss_pred eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCC-CCCeEEEEEcC
Q 021121 4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSES-HDSLLIAAVAD 82 (317)
Q Consensus 4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d 82 (317)
+....++..+.|++ ++..+++++ ++|.+++|+....+ . .....+|.+.|.++.|+|. .+..+++|+.|
T Consensus 172 ~gd~rPis~~~fS~--ds~~laT~s------wsG~~kvW~~~~~~-~--~~~l~gH~~~v~~~~fhP~~~~~~lat~s~D 240 (459)
T KOG0272|consen 172 VGDTRPISGCSFSR--DSKHLATGS------WSGLVKVWSVPQCN-L--LQTLRGHTSRVGAAVFHPVDSDLNLATASAD 240 (459)
T ss_pred ccCCCcceeeEeec--CCCeEEEee------cCCceeEeecCCcc-e--eEEEeccccceeeEEEccCCCccceeeeccC
Confidence 44567899999999 567777776 39999999988763 2 2333489999999999998 45799999999
Q ss_pred CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCC
Q 021121 83 GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS 162 (317)
Q Consensus 83 g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (317)
|++++|+++.. .++..+.+|...|..++|+|+|+ +|++++.|.+-++||++++..+....+|...|.+++|+|+ +
T Consensus 241 gtvklw~~~~e---~~l~~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~D-G 315 (459)
T KOG0272|consen 241 GTVKLWKLSQE---TPLQDLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPD-G 315 (459)
T ss_pred CceeeeccCCC---cchhhhhcchhhheeeeecCCCc-eeeecccccchhhcccccchhhHhhcccccccceeEecCC-C
Confidence 99999999876 88899999999999999999999 9999999999999999999999999999999999999999 9
Q ss_pred CeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEE
Q 021121 163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKV 242 (317)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~ 242 (317)
.++++|+.|..-+|||+|+++++..+.+|..+|.+++|+| +|..+|+|+.|++++|||++..+ .+..+.+|..-|+.+
T Consensus 316 SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~-~ly~ipAH~nlVS~V 393 (459)
T KOG0272|consen 316 SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRS-ELYTIPAHSNLVSQV 393 (459)
T ss_pred ceeeccCccchhheeecccCcEEEEecccccceeeEeECC-CceEEeecCCCCcEEEeeecccc-cceecccccchhhhe
Confidence 9999999999999999999999999999999999999999 99999999999999999999866 489999999999999
Q ss_pred EecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121 243 KFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309 (317)
Q Consensus 243 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~ 309 (317)
+|+|...++|+|++.|++++||..++.. +++.+.+|++.|.+++.+++ +..++|++.|+++++|.
T Consensus 394 k~~p~~g~fL~TasyD~t~kiWs~~~~~-~~ksLaGHe~kV~s~Dis~d-~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 394 KYSPQEGYFLVTASYDNTVKIWSTRTWS-PLKSLAGHEGKVISLDISPD-SQAIATSSFDRTIKLWR 458 (459)
T ss_pred EecccCCeEEEEcccCcceeeecCCCcc-cchhhcCCccceEEEEeccC-CceEEEeccCceeeecc
Confidence 9999666699999999999999998887 77899999999999999999 89999999999999996
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.2e-52 Score=316.12 Aligned_cols=284 Identities=28% Similarity=0.386 Sum_probs=256.4
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCC----CCCeEEEEEc
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSES----HDSLLIAAVA 81 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~ 81 (317)
|..-|.|++|+| ++..++++.. +|.|++||..+++..-..+. +|...|++++|.|- +..+||+++.
T Consensus 156 H~~WVlcvawsP--Dgk~iASG~~------dg~I~lwdpktg~~~g~~l~--gH~K~It~Lawep~hl~p~~r~las~sk 225 (480)
T KOG0271|consen 156 HKNWVLCVAWSP--DGKKIASGSK------DGSIRLWDPKTGQQIGRALR--GHKKWITALAWEPLHLVPPCRRLASSSK 225 (480)
T ss_pred CccEEEEEEECC--Ccchhhcccc------CCeEEEecCCCCCccccccc--CcccceeEEeecccccCCCccceecccC
Confidence 677899999999 7888888887 99999999988875555554 89999999999872 2358999999
Q ss_pred CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEec--
Q 021121 82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP-- 159 (317)
Q Consensus 82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~-- 159 (317)
||.|+|||+..+ .++..+.+|..+|+|++|--+| ++++|+.|++|++|+...|.+.+.+++|...|+.++.+-
T Consensus 226 Dg~vrIWd~~~~---~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy 300 (480)
T KOG0271|consen 226 DGSVRIWDTKLG---TCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDY 300 (480)
T ss_pred CCCEEEEEccCc---eEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchh
Confidence 999999999866 7888899999999999998655 899999999999999999999999999999999998872
Q ss_pred ---------C------------------------CCCeEEEEeCCCeEEEEeCCCC-CceeeeccCccceEEEEecCCCC
Q 021121 160 ---------R------------------------HSDVFCSASGDCTLRIWDVREM-GSTMIIPAHEFEILACDWNKYDD 205 (317)
Q Consensus 160 ---------~------------------------~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~ 205 (317)
. ++..+++|++|.++.+|+.... +++..+.+|..-|+.+.|+| ++
T Consensus 301 ~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~ 379 (480)
T KOG0271|consen 301 VLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DG 379 (480)
T ss_pred hhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-Cc
Confidence 1 2446999999999999998755 47778889999999999999 99
Q ss_pred cEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEe
Q 021121 206 CLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVG 285 (317)
Q Consensus 206 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~ 285 (317)
+++|+++.|..|++||.++++. +..+++|-.+|+.++|+.|.+ +|++|+.|.++++||+++.+ +...+.+|...|.+
T Consensus 380 r~IASaSFDkSVkLW~g~tGk~-lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tkK-l~~DLpGh~DEVf~ 456 (480)
T KOG0271|consen 380 RYIASASFDKSVKLWDGRTGKF-LASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTKK-LKQDLPGHADEVFA 456 (480)
T ss_pred cEEEEeecccceeeeeCCCcch-hhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeeee-ecccCCCCCceEEE
Confidence 9999999999999999999885 889999999999999999998 89999999999999999976 77889999999999
Q ss_pred EEEEeccCCeEEEeecCCcEEEEe
Q 021121 286 VDMSVLVEGLLASTGWDELVYVWQ 309 (317)
Q Consensus 286 ~~~~~~~~~~l~s~~~dg~i~~w~ 309 (317)
+.|+|| +..+++|+.|..+++|.
T Consensus 457 vDwspD-G~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 457 VDWSPD-GQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEecCC-CceeecCCCceEEEeec
Confidence 999999 89999999999999995
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.2e-47 Score=283.31 Aligned_cols=285 Identities=23% Similarity=0.334 Sum_probs=252.5
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
|...|+++.|++ +.+.+++.++ ||++.|||.-+.+. ...+. -....|..++|+|.+ +++|+|+-|+..
T Consensus 54 H~~Ki~~~~ws~--Dsr~ivSaSq------DGklIvWDs~TtnK-~haip--l~s~WVMtCA~sPSg-~~VAcGGLdN~C 121 (343)
T KOG0286|consen 54 HLNKIYAMDWST--DSRRIVSASQ------DGKLIVWDSFTTNK-VHAIP--LPSSWVMTCAYSPSG-NFVACGGLDNKC 121 (343)
T ss_pred cccceeeeEecC--CcCeEEeecc------CCeEEEEEcccccc-eeEEe--cCceeEEEEEECCCC-CeEEecCcCcee
Confidence 778999999999 6788888887 99999999877652 11221 245679999999998 699999999999
Q ss_pred EEEEeCCCCCC---CCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCC
Q 021121 86 KIYDTALPPTA---NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS 162 (317)
Q Consensus 86 ~v~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (317)
.||++...+.. ...+.+.+|.+.+.|+.|.+|+ .|++++.|.+..+||+++++.+..+.+|.+.|.++.++|.++
T Consensus 122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ 199 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDG 199 (343)
T ss_pred EEEecccccccccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCC
Confidence 99999865322 4455688999999999999875 599999999999999999999999999999999999999559
Q ss_pred CeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe--cCCCcee
Q 021121 163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN--GHGYAVR 240 (317)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~~v~ 240 (317)
+.+++|+-|+..++||+|.+...+.+.+|+..|+++.|.| ++.-+++|++|++.++||+|..++ +..+. .-..+|+
T Consensus 200 ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRlyDlRaD~~-~a~ys~~~~~~git 277 (343)
T KOG0286|consen 200 NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-SGDAFATGSDDATCRLYDLRADQE-LAVYSHDSIICGIT 277 (343)
T ss_pred CeEEecccccceeeeeccCcceeEeecccccccceEEEcc-CCCeeeecCCCceeEEEeecCCcE-EeeeccCcccCCce
Confidence 9999999999999999999999999999999999999999 999999999999999999998764 44443 3346899
Q ss_pred EEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121 241 KVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309 (317)
Q Consensus 241 ~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~ 309 (317)
+++||..|+ +|++|..|.++.+||.-.++ .+..+.+|+..|.++..+|+ +..++||+.|..++||.
T Consensus 278 Sv~FS~SGR-lLfagy~d~~c~vWDtlk~e-~vg~L~GHeNRvScl~~s~D-G~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 278 SVAFSKSGR-LLFAGYDDFTCNVWDTLKGE-RVGVLAGHENRVSCLGVSPD-GMAVATGSWDSTLRIWA 343 (343)
T ss_pred eEEEccccc-EEEeeecCCceeEeeccccc-eEEEeeccCCeeEEEEECCC-CcEEEecchhHheeecC
Confidence 999999999 79999999999999998876 67889999999999999999 89999999999999994
No 6
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.1e-47 Score=292.83 Aligned_cols=286 Identities=22% Similarity=0.407 Sum_probs=253.4
Q ss_pred CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEE
Q 021121 7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVK 86 (317)
Q Consensus 7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 86 (317)
.-+|..+.|.| +++-+++++. .|.+.+|+...-. .+.....|..+|+++.|++++ ..+++|..+|.|+
T Consensus 96 kc~V~~v~WtP--eGRRLltgs~------SGEFtLWNg~~fn---FEtilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~iK 163 (464)
T KOG0284|consen 96 KCPVNVVRWTP--EGRRLLTGSQ------SGEFTLWNGTSFN---FETILQAHDSPVRTMKWSHNG-TWMISGDKGGMIK 163 (464)
T ss_pred ccceeeEEEcC--CCceeEeecc------cccEEEecCceee---HHHHhhhhcccceeEEEccCC-CEEEEcCCCceEE
Confidence 45788999999 5554555544 8999999985543 233445799999999999998 6999999999999
Q ss_pred EEEeCCCCCCCCceeeccC-CcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121 87 IYDTALPPTANPIRSLHEH-TREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF 165 (317)
Q Consensus 87 v~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 165 (317)
+|+..- ..+..++.| ...|.+++|+|... .+++++.||+|+|||....+....+.+|.-.|.+++|+|. ..++
T Consensus 164 yWqpnm----nnVk~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~-kgLi 237 (464)
T KOG0284|consen 164 YWQPNM----NNVKIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPT-KGLI 237 (464)
T ss_pred ecccch----hhhHHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCc-ccee
Confidence 999754 344455554 59999999999877 9999999999999999999998999999999999999999 8899
Q ss_pred EEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEec
Q 021121 166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFS 245 (317)
Q Consensus 166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~ 245 (317)
++++.|..|++||.++++++.++..|+..|..+.|+| ++++|++++.|..+++||+++.+. +..+++|...|+++.|+
T Consensus 238 asgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkE-l~~~r~Hkkdv~~~~Wh 315 (464)
T KOG0284|consen 238 ASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKE-LFTYRGHKKDVTSLTWH 315 (464)
T ss_pred EEccCCceeEeecCCCcchhhhhhhccceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHH-HHHhhcchhhheeeccc
Confidence 9999999999999999999999999999999999999 889999999999999999997664 78889999999999999
Q ss_pred CCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121 246 PHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 246 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
|-...+|.+|+.||.|..|.+...+++...-..|...|.+++|+|- +.+|++|+.|.++++|.-...
T Consensus 316 P~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPl-Ghil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 316 PLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPL-GHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred cccccceeeccCCCceEEEeccccccccCCCcccccceeeeecccc-ceeEeecCCCcceeeeccCCC
Confidence 9988899999999999999998777666677789999999999999 899999999999999987654
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.3e-46 Score=290.49 Aligned_cols=247 Identities=25% Similarity=0.402 Sum_probs=231.8
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecC-CCCEEEEEcCCCEEEEEEc
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPT-RRDSFITSSWDDTVKLWTV 136 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~iwd~ 136 (317)
+...+|..+.|++++ ..|++|+.+|.+++|+.... ..+..+.+|.+.|.++.|+|. ....+++|+.||++++|++
T Consensus 173 gd~rPis~~~fS~ds-~~laT~swsG~~kvW~~~~~---~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDS-KHLATGSWSGLVKVWSVPQC---NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred cCCCcceeeEeecCC-CeEEEeecCCceeEeecCCc---ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 456789999999998 69999999999999998765 788899999999999999998 3448999999999999999
Q ss_pred CCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCc
Q 021121 137 DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKS 216 (317)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~ 216 (317)
++...+..+.+|...|..++|+|+ +++|++++.|.+-++||++++..+....+|..+|.+++|+| +|.++++|+.|..
T Consensus 249 ~~e~~l~~l~gH~~RVs~VafHPs-G~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~ 326 (459)
T KOG0272|consen 249 SQETPLQDLEGHLARVSRVAFHPS-GKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSL 326 (459)
T ss_pred CCCcchhhhhcchhhheeeeecCC-CceeeecccccchhhcccccchhhHhhcccccccceeEecC-CCceeeccCccch
Confidence 999999999999999999999999 99999999999999999999999999999999999999999 9999999999999
Q ss_pred EEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeE
Q 021121 217 IKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLL 296 (317)
Q Consensus 217 i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 296 (317)
-+|||+|++++ +..+.+|..+|.+++|+|+|- .||||+.|++++|||++..+ .+..+.+|..-|+.+.|+|+.+.+|
T Consensus 327 ~RvWDlRtgr~-im~L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r~-~ly~ipAH~nlVS~Vk~~p~~g~fL 403 (459)
T KOG0272|consen 327 GRVWDLRTGRC-IMFLAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRMRS-ELYTIPAHSNLVSQVKYSPQEGYFL 403 (459)
T ss_pred hheeecccCcE-EEEecccccceeeEeECCCce-EEeecCCCCcEEEeeecccc-cceecccccchhhheEecccCCeEE
Confidence 99999999885 888999999999999999997 69999999999999999877 4789999999999999999778999
Q ss_pred EEeecCCcEEEEecCCC
Q 021121 297 ASTGWDELVYVWQQGMD 313 (317)
Q Consensus 297 ~s~~~dg~i~~w~~~~~ 313 (317)
+|++.|+++++|.-..-
T Consensus 404 ~TasyD~t~kiWs~~~~ 420 (459)
T KOG0272|consen 404 VTASYDNTVKIWSTRTW 420 (459)
T ss_pred EEcccCcceeeecCCCc
Confidence 99999999999987653
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-43 Score=258.66 Aligned_cols=288 Identities=20% Similarity=0.276 Sum_probs=238.7
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcce--eeeeecCCCCeeEEEecCCCCCeEEEEEcCC
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALT--ELVAFDTADGVYDLAWSESHDSLLIAAVADG 83 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 83 (317)
|++.|+.++..+. +..++.+.+. |..+.+|++......+- .....+|...|..+..+++| +++++++.|+
T Consensus 14 h~d~Vt~la~~~~-~~~~l~sasr------Dk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg-~~alS~swD~ 85 (315)
T KOG0279|consen 14 HTDWVTALAIKIK-NSDILVSASR------DKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDG-NFALSASWDG 85 (315)
T ss_pred CCceEEEEEeecC-CCceEEEccc------ceEEEEEEeccCccccCceeeeeeccceEecceEEccCC-ceEEeccccc
Confidence 7899999999997 3445555554 89999999987654331 22233788899999999998 6999999999
Q ss_pred eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecc-ccceEEEEEecCC-
Q 021121 84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEH-AYCVYNATWNPRH- 161 (317)
Q Consensus 84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~- 161 (317)
++++||+..+ +..+.+.+|...|.+++|+++.. .+++|+.|.+|++|+............. .+.|.|+.|+|+.
T Consensus 86 ~lrlWDl~~g---~~t~~f~GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~ 161 (315)
T KOG0279|consen 86 TLRLWDLATG---ESTRRFVGHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNES 161 (315)
T ss_pred eEEEEEecCC---cEEEEEEecCCceEEEEecCCCc-eeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCC
Confidence 9999999877 78888999999999999999988 8999999999999998755443333322 7899999999985
Q ss_pred CCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeE
Q 021121 162 SDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241 (317)
Q Consensus 162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~ 241 (317)
..+|++++.|++|++||+++.+....+.+|...++.++++| +|.++++|+.||.+.+||++..+. +..+ +|...|.+
T Consensus 162 ~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~k~-lysl-~a~~~v~s 238 (315)
T KOG0279|consen 162 NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEGKN-LYSL-EAFDIVNS 238 (315)
T ss_pred CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECC-CCCEEecCCCCceEEEEEccCCce-eEec-cCCCeEee
Confidence 56899999999999999999999999999999999999999 999999999999999999999775 5555 47789999
Q ss_pred EEecCCCCeeEEeeecCCeEEEEecccccceeeeee----cc-----cceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYD----HH-----TEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 242 ~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~----~~-----~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
++|+|+.. .|+. ..+..|+|||+.++. ++..+. +. .....+++|+++ +..|++|-.|+.|++|.+..
T Consensus 239 l~fspnry-wL~~-at~~sIkIwdl~~~~-~v~~l~~d~~g~s~~~~~~~clslaws~d-G~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 239 LCFSPNRY-WLCA-ATATSIKIWDLESKA-VVEELKLDGIGPSSKAGDPICLSLAWSAD-GQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred EEecCCce-eEee-ccCCceEEEeccchh-hhhhccccccccccccCCcEEEEEEEcCC-CcEEEeeecCCcEEEEEeec
Confidence 99999874 4544 456679999999876 222222 11 334678899999 89999999999999999853
No 9
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.2e-44 Score=279.35 Aligned_cols=292 Identities=24% Similarity=0.384 Sum_probs=252.0
Q ss_pred eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCccee-------e----eeecCCCCeeEEEecCCC
Q 021121 4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTE-------L----VAFDTADGVYDLAWSESH 72 (317)
Q Consensus 4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~-------~----~~~~~~~~v~~~~~~~~~ 72 (317)
+.|..+|.+++|+|-.++.+ ++++. +...++|++......... + ........|++++|+.+|
T Consensus 175 l~~~~~V~~~~WnP~~~~ll-asg~~------~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G 247 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLL-ASGSG------DSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDG 247 (524)
T ss_pred ccCCCceEEEecCchhhhhh-hccCC------ccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCC
Confidence 34788999999999644444 44443 789999999852111111 1 112345689999999998
Q ss_pred CCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccce
Q 021121 73 DSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCV 152 (317)
Q Consensus 73 ~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v 152 (317)
.+||+|+.||.+++|+... ..+.++..|+++|.++.|+..|. +|++++.|+++.+||..+++..+.+.-|..+-
T Consensus 248 -~~LatG~~~G~~riw~~~G----~l~~tl~~HkgPI~slKWnk~G~-yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~ 321 (524)
T KOG0273|consen 248 -TLLATGSEDGEARIWNKDG----NLISTLGQHKGPIFSLKWNKKGT-YILSGGVDGTTILWDAHTGTVKQQFEFHSAPA 321 (524)
T ss_pred -CeEEEeecCcEEEEEecCc----hhhhhhhccCCceEEEEEcCCCC-EEEeccCCccEEEEeccCceEEEeeeeccCCc
Confidence 6999999999999999653 67888999999999999999998 99999999999999999999999999888887
Q ss_pred EEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEE
Q 021121 153 YNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVL 232 (317)
Q Consensus 153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 232 (317)
..+.|-. ..-+++++.|+.|+++.+....++.++.+|.++|.++.|+| .+.+|++++.|+++++|...... ....+
T Consensus 322 lDVdW~~--~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~-~~~~l 397 (524)
T KOG0273|consen 322 LDVDWQS--NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSN-SVHDL 397 (524)
T ss_pred cceEEec--CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCCc-chhhh
Confidence 8899985 46788999999999999999999999999999999999999 99999999999999999987755 47888
Q ss_pred ecCCCceeEEEecCCCC--------eeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCc
Q 021121 233 NGHGYAVRKVKFSPHRR--------NLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDEL 304 (317)
Q Consensus 233 ~~~~~~v~~~~~~~~~~--------~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 304 (317)
.+|...|..+.|+|.++ ..+++++.|++|++||+..+. ++..+..|..+|++++|+|+ +.++|+|+.||.
T Consensus 398 ~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv-~i~~f~kH~~pVysvafS~~-g~ylAsGs~dg~ 475 (524)
T KOG0273|consen 398 QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV-PIHTLMKHQEPVYSVAFSPN-GRYLASGSLDGC 475 (524)
T ss_pred hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc-eeEeeccCCCceEEEEecCC-CcEEEecCCCCe
Confidence 99999999999999763 268999999999999999987 66788899999999999999 899999999999
Q ss_pred EEEEecCCCC
Q 021121 305 VYVWQQGMDP 314 (317)
Q Consensus 305 i~~w~~~~~~ 314 (317)
|.+|+..+.+
T Consensus 476 V~iws~~~~~ 485 (524)
T KOG0273|consen 476 VHIWSTKTGK 485 (524)
T ss_pred eEeccccchh
Confidence 9999987653
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5e-43 Score=253.45 Aligned_cols=267 Identities=21% Similarity=0.321 Sum_probs=231.7
Q ss_pred CceEEEEecCCCCCcceeeeeec-CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEE
Q 021121 36 NGRVHVLDLSPAAPALTELVAFD-TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADY 114 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (317)
|.+|++|...++. ....+. ....|+.+...|++ ..||+++. -.|++||+.+. ...++.++.+|...|+++.|
T Consensus 19 DhTIRfWqa~tG~----C~rTiqh~dsqVNrLeiTpdk-~~LAaa~~-qhvRlyD~~S~-np~Pv~t~e~h~kNVtaVgF 91 (311)
T KOG0315|consen 19 DHTIRFWQALTGI----CSRTIQHPDSQVNRLEITPDK-KDLAAAGN-QHVRLYDLNSN-NPNPVATFEGHTKNVTAVGF 91 (311)
T ss_pred cceeeeeehhcCe----EEEEEecCccceeeEEEcCCc-chhhhccC-CeeEEEEccCC-CCCceeEEeccCCceEEEEE
Confidence 8999999998875 233333 45689999999997 57877765 56999999986 44588999999999999999
Q ss_pred ecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee-ccCcc
Q 021121 115 NPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII-PAHEF 193 (317)
Q Consensus 115 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~ 193 (317)
..+|+ .+++|+.||+++|||++...+.+.++ +..+|+++..+|+ ...|++|..+|.|++||+.+......+ +....
T Consensus 92 ~~dgr-WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpn-QteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 92 QCDGR-WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPN-QTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred eecCe-EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCC-cceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 99998 99999999999999999987777776 6799999999998 777889999999999999987555544 34556
Q ss_pred ceEEEEecCCCCcEEEEEecCCcEEEEEccCCC-----ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121 194 EILACDWNKYDDCLIASASVDKSIKIWDVRNYR-----VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV 268 (317)
Q Consensus 194 ~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~ 268 (317)
++.++...| ++.+++.+...|..++|++-... .|+..++.|++.+..+.+||+++ +|++++.|.+++||+.++
T Consensus 169 ~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k-~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 169 SIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK-YLATCSSDKTVKIWNTDD 246 (311)
T ss_pred ceeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc-EEEeecCCceEEEEecCC
Confidence 899999999 99999999999999999987533 36677889999999999999999 799999999999999988
Q ss_pred ccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCCC
Q 021121 269 EDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPR 315 (317)
Q Consensus 269 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~ 315 (317)
--.....+.+|...+.+.+||.+ +.+|++|+.|+.+++|++...++
T Consensus 247 ~~kle~~l~gh~rWvWdc~FS~d-g~YlvTassd~~~rlW~~~~~k~ 292 (311)
T KOG0315|consen 247 FFKLELVLTGHQRWVWDCAFSAD-GEYLVTASSDHTARLWDLSAGKE 292 (311)
T ss_pred ceeeEEEeecCCceEEeeeeccC-ccEEEecCCCCceeecccccCce
Confidence 74456778899999999999999 89999999999999999988763
No 11
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-42 Score=254.00 Aligned_cols=286 Identities=21% Similarity=0.292 Sum_probs=240.7
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCC-CcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAA-PALTELVAFDTADGVYDLAWSESHDSLLIAAVADGS 84 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 84 (317)
+.+.+..++|+|- .+.++++++. |..|++|+..... ...+....-.|+..|+.++|+|.| ++|++|+.|.+
T Consensus 13 h~~r~W~~awhp~-~g~ilAscg~------Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g-~~La~aSFD~t 84 (312)
T KOG0645|consen 13 HKDRVWSVAWHPG-KGVILASCGT------DKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG-RYLASASFDAT 84 (312)
T ss_pred CCCcEEEEEeccC-CceEEEeecC------CceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC-cEEEEeeccce
Confidence 6678999999992 2778888886 9999999998522 122222233689999999999998 59999999999
Q ss_pred EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC---ceeEEeeccccceEEEEEecCC
Q 021121 85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP---TSVRTFKEHAYCVYNATWNPRH 161 (317)
Q Consensus 85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~ 161 (317)
+.||.-.. ...+++..+++|...|.|++|+++|. +||+++.|..|.||.+..+ ++...++.|...|..+.|+|.
T Consensus 85 ~~Iw~k~~-~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt- 161 (312)
T KOG0645|consen 85 VVIWKKED-GEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT- 161 (312)
T ss_pred EEEeecCC-CceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC-
Confidence 99998654 46678889999999999999999998 9999999999999999754 567788999999999999998
Q ss_pred CCeEEEEeCCCeEEEEeCCCC---CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCc
Q 021121 162 SDVFCSASGDCTLRIWDVREM---GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYA 238 (317)
Q Consensus 162 ~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 238 (317)
..+|++++.|.+|++|+-... .+..++.+|...|.+++|+| .|..+++++.|++++||-.... .-..|..+
T Consensus 162 ~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~ 235 (312)
T KOG0645|consen 162 EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRA 235 (312)
T ss_pred cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCcceEeeeeccC-----cchhcccc
Confidence 889999999999999987632 56888999999999999999 9999999999999999986632 11236778
Q ss_pred eeEEEecCCCCeeEEeeecCCeEEEEeccccc------ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121 239 VRKVKFSPHRRNLLASCSYDMTVCLWDFMVED------ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG 311 (317)
Q Consensus 239 v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~ 311 (317)
+..+.|. ++ +|++++.|+.|++|.-...- .+...-..|+..|++++|.|...++|++|+.||.|++|.+.
T Consensus 236 ~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 236 LYDVPWD-NG--VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eEeeeec-cc--ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9999998 44 69999999999999865421 22234457888999999999667899999999999999875
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.5e-44 Score=295.04 Aligned_cols=247 Identities=27% Similarity=0.464 Sum_probs=228.4
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCC----------------------------CCCCceeeccCCcce
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPP----------------------------TANPIRSLHEHTREV 109 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~----------------------------~~~~~~~~~~~~~~v 109 (317)
.....++|..|++++ .+||.|..|..|++|.+...+ .......+.+|.++|
T Consensus 376 nt~~~v~ca~fSdds-smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPV 454 (707)
T KOG0263|consen 376 NTYQGVTCAEFSDDS-SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPV 454 (707)
T ss_pred EcCCcceeEeecCCc-chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCce
Confidence 566789999999998 699999999999999987420 111234467899999
Q ss_pred EEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec
Q 021121 110 HSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP 189 (317)
Q Consensus 110 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 189 (317)
..+.|+|+.+ +|++++.|+++++|.+.+..++-.+++|..||+.+.|+|. +.+|++++.|++.++|......+++.+.
T Consensus 455 yg~sFsPd~r-fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~-GyYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 455 YGCSFSPDRR-FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR-GYYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred eeeeeccccc-ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC-ceEEEecCCCceeeeeecccCCchhhhc
Confidence 9999999988 9999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccc
Q 021121 190 AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE 269 (317)
Q Consensus 190 ~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~ 269 (317)
+|-+.+.|+.|+| +.+++++|+.|.++++||..++.. ++.+.+|.++|.+++|+|+|+ +|++|+.||.|++||+.++
T Consensus 533 ghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~-VRiF~GH~~~V~al~~Sp~Gr-~LaSg~ed~~I~iWDl~~~ 609 (707)
T KOG0263|consen 533 GHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNS-VRIFTGHKGPVTALAFSPCGR-YLASGDEDGLIKIWDLANG 609 (707)
T ss_pred ccccccceEEECC-cccccccCCCCceEEEEEcCCCcE-EEEecCCCCceEEEEEcCCCc-eEeecccCCcEEEEEcCCC
Confidence 9999999999999 999999999999999999999875 899999999999999999999 7999999999999999998
Q ss_pred cceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121 270 DALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 270 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
+ ++..+.+|.+.|.++.|+.+ +..|++||.|.+|++||+..
T Consensus 610 ~-~v~~l~~Ht~ti~SlsFS~d-g~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 610 S-LVKQLKGHTGTIYSLSFSRD-GNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred c-chhhhhcccCceeEEEEecC-CCEEEecCCCCeEEEEEchh
Confidence 7 66788999999999999999 89999999999999999865
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.5e-41 Score=266.05 Aligned_cols=282 Identities=25% Similarity=0.394 Sum_probs=249.8
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
....|++++|+. ++.+++++.. +|.++||+..... ...+ -.|+++|.++.|+..| .+|++++.|+++
T Consensus 234 ~nkdVT~L~Wn~--~G~~LatG~~------~G~~riw~~~G~l--~~tl--~~HkgPI~slKWnk~G-~yilS~~vD~tt 300 (524)
T KOG0273|consen 234 SNKDVTSLDWNN--DGTLLATGSE------DGEARIWNKDGNL--ISTL--GQHKGPIFSLKWNKKG-TYILSGGVDGTT 300 (524)
T ss_pred ccCCcceEEecC--CCCeEEEeec------CcEEEEEecCchh--hhhh--hccCCceEEEEEcCCC-CEEEeccCCccE
Confidence 456899999999 7888888876 9999999987653 2222 3699999999999998 699999999999
Q ss_pred EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121 86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF 165 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 165 (317)
.+||..++ .....+.-|..+-..+.|-.+. .+++++.||.|+++.+....++.++.+|.++|.++.|+|. +.+|
T Consensus 301 ilwd~~~g---~~~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~t-g~LL 374 (524)
T KOG0273|consen 301 ILWDAHTG---TVKQQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPT-GSLL 374 (524)
T ss_pred EEEeccCc---eEEEeeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCC-CceE
Confidence 99998776 6666677788887889998665 5999999999999999999999999999999999999999 9999
Q ss_pred EEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCC--------CCcEEEEEecCCcEEEEEccCCCccEEEEecCCC
Q 021121 166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKY--------DDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGY 237 (317)
Q Consensus 166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~--------~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 237 (317)
++++.|++++||.+........+..|...|..+.|+|. .+..+++++.|++|++||+..+. ++..+..|..
T Consensus 375 aS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv-~i~~f~kH~~ 453 (524)
T KOG0273|consen 375 ASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV-PIHTLMKHQE 453 (524)
T ss_pred EEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc-eeEeeccCCC
Confidence 99999999999999998899999999999999999983 34579999999999999999876 5888989999
Q ss_pred ceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121 238 AVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG 311 (317)
Q Consensus 238 ~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~ 311 (317)
+|.+++|+|+++ ++++|+.||.|.+|++++++ +++.+.+. +.|..++|+.+ ++.|..+-.|+.+++-|+.
T Consensus 454 pVysvafS~~g~-ylAsGs~dg~V~iws~~~~~-l~~s~~~~-~~Ifel~Wn~~-G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 454 PVYSVAFSPNGR-YLASGSLDGCVHIWSTKTGK-LVKSYQGT-GGIFELCWNAA-GDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ceEEEEecCCCc-EEEecCCCCeeEeccccchh-eeEeecCC-CeEEEEEEcCC-CCEEEEEecCCCceEEEec
Confidence 999999999999 79999999999999999987 66777664 55999999998 6888888899999998875
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.2e-42 Score=261.70 Aligned_cols=285 Identities=28% Similarity=0.416 Sum_probs=255.9
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
+..+|+.+-|+| .-.+.+..++ |++|++||..++.- .....+|...+.+++|+..| .++++++.|-.+
T Consensus 107 ~r~~vt~v~~hp--~~~~v~~as~------d~tikv~D~~tg~~---e~~LrGHt~sv~di~~~a~G-k~l~tcSsDl~~ 174 (406)
T KOG0295|consen 107 HRSSVTRVIFHP--SEALVVSASE------DATIKVFDTETGEL---ERSLRGHTDSVFDISFDASG-KYLATCSSDLSA 174 (406)
T ss_pred cccceeeeeecc--CceEEEEecC------CceEEEEEccchhh---hhhhhccccceeEEEEecCc-cEEEecCCccch
Confidence 667899999999 5555565555 89999999998763 22233788899999999998 699999999999
Q ss_pred EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121 86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF 165 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 165 (317)
++||... ...+++.+.+|...|.+++|-|.|. ++++++.|.+|+.|++.++.++.++.+|...|..++.+.| +.++
T Consensus 175 ~LWd~~~--~~~c~ks~~gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~D-Gti~ 250 (406)
T KOG0295|consen 175 KLWDFDT--FFRCIKSLIGHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQD-GTII 250 (406)
T ss_pred hheeHHH--HHHHHHHhcCcccceeeEEEEecCC-eeeecccccceeEEecccceeEEeccCchHhEEEEEecCC-eeEE
Confidence 9999874 3567778889999999999999996 9999999999999999999999999999999999999998 9999
Q ss_pred EEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCC--------------CCcEEEEEecCCcEEEEEccCCCccEEE
Q 021121 166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKY--------------DDCLIASASVDKSIKIWDVRNYRVPIAV 231 (317)
Q Consensus 166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~--------------~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 231 (317)
++++.|.+|++|-+.++++...+..|+.++-+++|.|. .++++++++.|++|++||+.++. ++.+
T Consensus 251 As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~-cL~t 329 (406)
T KOG0295|consen 251 ASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM-CLFT 329 (406)
T ss_pred EecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe-EEEE
Confidence 99999999999999999888999999999999999773 23689999999999999999987 5889
Q ss_pred EecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121 232 LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ 310 (317)
Q Consensus 232 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~ 310 (317)
+.+|...|..++|+|.|+ ||+++.+|+++++||+++.+ +...+..|+..+++++|..+ ..+++||+-|..+++|.-
T Consensus 330 L~ghdnwVr~~af~p~Gk-yi~ScaDDktlrvwdl~~~~-cmk~~~ah~hfvt~lDfh~~-~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 330 LVGHDNWVRGVAFSPGGK-YILSCADDKTLRVWDLKNLQ-CMKTLEAHEHFVTSLDFHKT-APYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EecccceeeeeEEcCCCe-EEEEEecCCcEEEEEeccce-eeeccCCCcceeEEEecCCC-CceEEeccccceeeeeec
Confidence 999999999999999999 79999999999999999987 66788899999999999987 679999999999999963
No 15
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.2e-41 Score=282.11 Aligned_cols=269 Identities=26% Similarity=0.389 Sum_probs=236.3
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCC----------------------------Ccceeeeee
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAA----------------------------PALTELVAF 57 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~----------------------------~~~~~~~~~ 57 (317)
....+.|..|++ +..+++++-. |..|++|.+.+.. .........
T Consensus 377 t~~~v~ca~fSd--dssmlA~Gf~------dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~ 448 (707)
T KOG0263|consen 377 TYQGVTCAEFSD--DSSMLACGFV------DSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY 448 (707)
T ss_pred cCCcceeEeecC--Ccchhhcccc------ccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence 567889999999 5566666665 8899999998421 011123355
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD 137 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 137 (317)
+|.++|..+.|+|+. ++|++++.|+++|+|.+.+. ..+..+++|..+|+.+.|+|.|- ++++++.|++.++|...
T Consensus 449 GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~---s~~V~y~GH~~PVwdV~F~P~Gy-YFatas~D~tArLWs~d 523 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTW---SCLVIYKGHLAPVWDVQFAPRGY-YFATASHDQTARLWSTD 523 (707)
T ss_pred cCCCceeeeeecccc-cceeeccCCcceeeeecccc---eeEEEecCCCcceeeEEecCCce-EEEecCCCceeeeeecc
Confidence 899999999999997 79999999999999999876 78888999999999999999987 99999999999999999
Q ss_pred CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcE
Q 021121 138 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSI 217 (317)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i 217 (317)
...+++.+.+|-+.|.|+.|+|+ .+++++|+.|.+|++||..++..++.+.+|..+|.+++|+| .|.+|++|+.|+.|
T Consensus 524 ~~~PlRifaghlsDV~cv~FHPN-s~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp-~Gr~LaSg~ed~~I 601 (707)
T KOG0263|consen 524 HNKPLRIFAGHLSDVDCVSFHPN-SNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP-CGRYLASGDEDGLI 601 (707)
T ss_pred cCCchhhhcccccccceEEECCc-ccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC-CCceEeecccCCcE
Confidence 99999999999999999999999 99999999999999999999999999999999999999999 99999999999999
Q ss_pred EEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccc-----------------------eee
Q 021121 218 KIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDA-----------------------LVG 274 (317)
Q Consensus 218 ~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~-----------------------~~~ 274 (317)
.+||+.+++ ++..+.+|.+.|.++.|+.+|. +|++|+.|.+|++||+..... ++.
T Consensus 602 ~iWDl~~~~-~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llg 679 (707)
T KOG0263|consen 602 KIWDLANGS-LVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLG 679 (707)
T ss_pred EEEEcCCCc-chhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceee
Confidence 999999977 4888899999999999999998 899999999999999865321 334
Q ss_pred eeecccceeEeEEEEec
Q 021121 275 RYDHHTEFAVGVDMSVL 291 (317)
Q Consensus 275 ~~~~~~~~v~~~~~~~~ 291 (317)
.+.....+|..+.|...
T Consensus 680 s~~tK~tpv~~l~Ftrr 696 (707)
T KOG0263|consen 680 SFYTKNTPVVGLHFTRR 696 (707)
T ss_pred eeeecCceEEEEEEecc
Confidence 44455667888888874
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.4e-41 Score=246.25 Aligned_cols=250 Identities=22% Similarity=0.329 Sum_probs=216.6
Q ss_pred ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCC--CCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEE
Q 021121 57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPP--TANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLW 134 (317)
Q Consensus 57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw 134 (317)
..|++.|+.++..+.+...+++++.|..+.+|++.... .+.+++.+.+|...|..+..+++++ +.++++.|+.+++|
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~-~alS~swD~~lrlW 90 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN-FALSASWDGTLRLW 90 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc-eEEeccccceEEEE
Confidence 37999999999999888899999999999999998652 2356788999999999999999998 99999999999999
Q ss_pred EcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc-CccceEEEEecCCC-CcEEEEEe
Q 021121 135 TVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA-HEFEILACDWNKYD-DCLIASAS 212 (317)
Q Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~i~~~~~~-~~~l~~~~ 212 (317)
|+.+++..+.|.+|...|.+++|+|+ ...+++|+.|.+|++|+............ +...|.|+.|+|.. ..+|++++
T Consensus 91 Dl~~g~~t~~f~GH~~dVlsva~s~d-n~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s 169 (315)
T KOG0279|consen 91 DLATGESTRRFVGHTKDVLSVAFSTD-NRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSAS 169 (315)
T ss_pred EecCCcEEEEEEecCCceEEEEecCC-CceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc
Confidence 99999999999999999999999999 88899999999999999875433333332 27789999999943 78999999
Q ss_pred cCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEecc
Q 021121 213 VDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLV 292 (317)
Q Consensus 213 ~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 292 (317)
.|+++++||+++.+. ...+.+|++.++.+++||||. ++++|+.||.+.+||++.++. +. ...|...|.+++|+|+
T Consensus 170 ~DktvKvWnl~~~~l-~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~-ly-sl~a~~~v~sl~fspn- 244 (315)
T KOG0279|consen 170 WDKTVKVWNLRNCQL-RTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKN-LY-SLEAFDIVNSLCFSPN- 244 (315)
T ss_pred CCceEEEEccCCcch-hhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCce-eE-eccCCCeEeeEEecCC-
Confidence 999999999998664 778889999999999999999 899999999999999999875 33 3456788999999996
Q ss_pred CCeEEEeecCCcEEEEecCCCC
Q 021121 293 EGLLASTGWDELVYVWQQGMDP 314 (317)
Q Consensus 293 ~~~l~s~~~dg~i~~w~~~~~~ 314 (317)
.+.+....+..|+|||+....
T Consensus 245 -rywL~~at~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 245 -RYWLCAATATSIKIWDLESKA 265 (315)
T ss_pred -ceeEeeccCCceEEEeccchh
Confidence 444444556669999998753
No 17
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.4e-41 Score=247.98 Aligned_cols=286 Identities=21% Similarity=0.337 Sum_probs=249.3
Q ss_pred eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC
Q 021121 4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG 83 (317)
Q Consensus 4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 83 (317)
..|+..|+.+.|+| ++.++++++. |..|.+|+........-.+. .|.++|..+.|.+++ +.+++++.|.
T Consensus 44 ~gh~geI~~~~F~P--~gs~~aSgG~------Dr~I~LWnv~gdceN~~~lk--gHsgAVM~l~~~~d~-s~i~S~gtDk 112 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHP--DGSCFASGGS------DRAIVLWNVYGDCENFWVLK--GHSGAVMELHGMRDG-SHILSCGTDK 112 (338)
T ss_pred CCCcceEEEEEECC--CCCeEeecCC------cceEEEEeccccccceeeec--cccceeEeeeeccCC-CEEEEecCCc
Confidence 45889999999999 6777777775 99999999765543333333 899999999999998 6999999999
Q ss_pred eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCC
Q 021121 84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSD 163 (317)
Q Consensus 84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 163 (317)
+|+.||.+++ +.....+.|..-|+.+.-+..|..++.+++.||++++||+++...++.+. .+.+++++.|... +.
T Consensus 113 ~v~~wD~~tG---~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~-s~ 187 (338)
T KOG0265|consen 113 TVRGWDAETG---KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDT-SD 187 (338)
T ss_pred eEEEEecccc---eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEeccc-cc
Confidence 9999999887 88888999999999999777788789999999999999999988888775 4677999999988 77
Q ss_pred eEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCC---CccEEEEecCC----
Q 021121 164 VFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNY---RVPIAVLNGHG---- 236 (317)
Q Consensus 164 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~~~~~---- 236 (317)
.+.+|+-|+.|++||++.......+.+|..+|+.+..+| ++.++.+-+.|.++++||++.. +.++..+.+|.
T Consensus 188 qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~-~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfe 266 (338)
T KOG0265|consen 188 QVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSR-YGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFE 266 (338)
T ss_pred ceeeccccCceeeeccccCcceEEeecccCceeeEEecc-CCCccccccccceEEEEEecccCCCCceEEEeecchhhhh
Confidence 788999999999999999999999999999999999999 9999999999999999999853 23356666543
Q ss_pred CceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121 237 YAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309 (317)
Q Consensus 237 ~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~ 309 (317)
.....++|+|++. .+.+|+.|..+.+||..... ++..+.+|.+.|..++|+|. ..+|.+++.|.+|++=.
T Consensus 267 knlL~cswsp~~~-~i~ags~dr~vyvwd~~~r~-~lyklpGh~gsvn~~~Fhp~-e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 267 KNLLKCSWSPNGT-KITAGSADRFVYVWDTTSRR-ILYKLPGHYGSVNEVDFHPT-EPIILSCSSDKTIYLGE 336 (338)
T ss_pred hhcceeeccCCCC-ccccccccceEEEeeccccc-EEEEcCCcceeEEEeeecCC-CcEEEEeccCceeEeec
Confidence 2446789999998 69999999999999987765 77899999999999999999 88999999999998643
No 18
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.1e-39 Score=294.58 Aligned_cols=289 Identities=17% Similarity=0.279 Sum_probs=237.6
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCC----CcceeeeeecCCCCeeEEEecCCCCCeEEEEEc
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAA----PALTELVAFDTADGVYDLAWSESHDSLLIAAVA 81 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 81 (317)
|...|.+++|+| ++.++++++. |+.|+||++.... ..........+...+.+++|+|....+|++++.
T Consensus 482 ~~~~V~~i~fs~--dg~~latgg~------D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~ 553 (793)
T PLN00181 482 SSNLVCAIGFDR--DGEFFATAGV------NKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNF 553 (793)
T ss_pred CCCcEEEEEECC--CCCEEEEEeC------CCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeC
Confidence 677899999999 5666666665 9999999986421 111122233456689999999865579999999
Q ss_pred CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCC
Q 021121 82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRH 161 (317)
Q Consensus 82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (317)
||.|++||+... +.+..+.+|...|++++|+|....+|++|+.||.|++||++++..+..+..+ ..+.++.|++.+
T Consensus 554 Dg~v~lWd~~~~---~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~ 629 (793)
T PLN00181 554 EGVVQVWDVARS---QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSES 629 (793)
T ss_pred CCeEEEEECCCC---eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCC
Confidence 999999999865 6677788999999999999744349999999999999999999888888754 679999997766
Q ss_pred CCeEEEEeCCCeEEEEeCCCCC-ceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCC-----CccEEEEecC
Q 021121 162 SDVFCSASGDCTLRIWDVREMG-STMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNY-----RVPIAVLNGH 235 (317)
Q Consensus 162 ~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~-----~~~~~~~~~~ 235 (317)
+.++++|+.||.|++||+++.+ ....+.+|...|.++.|. ++.++++++.|+.|++||++.. ..++..+.+|
T Consensus 630 g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh 707 (793)
T PLN00181 630 GRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH 707 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC
Confidence 8999999999999999998765 466778899999999996 5678999999999999999753 2357788899
Q ss_pred CCceeEEEecCCCCeeEEeeecCCeEEEEecccccceee------------eeecccceeEeEEEEeccCCeEEEeecCC
Q 021121 236 GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVG------------RYDHHTEFAVGVDMSVLVEGLLASTGWDE 303 (317)
Q Consensus 236 ~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~------------~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 303 (317)
...+..++|+|++. +|++|+.|+.|++|+......... ....+...|.+++|+|+ +..|++|+.||
T Consensus 708 ~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~-~~~lva~~~dG 785 (793)
T PLN00181 708 TNVKNFVGLSVSDG-YIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ-SSTLVAANSTG 785 (793)
T ss_pred CCCeeEEEEcCCCC-EEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC-CCeEEEecCCC
Confidence 99999999999998 799999999999999765432211 12345667999999998 78999999999
Q ss_pred cEEEEec
Q 021121 304 LVYVWQQ 310 (317)
Q Consensus 304 ~i~~w~~ 310 (317)
.|++|++
T Consensus 786 ~I~i~~~ 792 (793)
T PLN00181 786 NIKILEM 792 (793)
T ss_pred cEEEEec
Confidence 9999997
No 19
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.2e-39 Score=262.08 Aligned_cols=282 Identities=28% Similarity=0.422 Sum_probs=243.8
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
|..+|.+++|+| ++.++++++. +|.|++|++..... ......|...+..+.|+|++ ..+++++.+|.|
T Consensus 8 h~~~i~~~~~~~--~~~~l~~~~~------~g~i~i~~~~~~~~---~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i 75 (289)
T cd00200 8 HTGGVTCVAFSP--DGKLLATGSG------DGTIKVWDLETGEL---LRTLKGHTGPVRDVAASADG-TYLASGSSDKTI 75 (289)
T ss_pred cCCCEEEEEEcC--CCCEEEEeec------CcEEEEEEeeCCCc---EEEEecCCcceeEEEECCCC-CEEEEEcCCCeE
Confidence 789999999999 4556666554 89999999987652 22223677788999999997 689999999999
Q ss_pred EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121 86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF 165 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 165 (317)
++|++... +....+..|...+.++.|++++. ++++++.+|.|.+||+++++....+..|...+.++.|+|+ +.++
T Consensus 76 ~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l 150 (289)
T cd00200 76 RLWDLETG---ECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD-GTFV 150 (289)
T ss_pred EEEEcCcc---cceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCc-CCEE
Confidence 99999865 56667778889999999999966 8888888999999999988888888888899999999998 7888
Q ss_pred EEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEec
Q 021121 166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFS 245 (317)
Q Consensus 166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~ 245 (317)
++++.++.|++||+++++....+..+...+.++.|+| +++.+++++.++.|++||++..+ .+..+..|...+.+++|+
T Consensus 151 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~ 228 (289)
T cd00200 151 ASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGK-CLGTLRGHENGVNSVAFS 228 (289)
T ss_pred EEEcCCCcEEEEEccccccceeEecCccccceEEECC-CcCEEEEecCCCcEEEEECCCCc-eecchhhcCCceEEEEEc
Confidence 8888899999999998888888888888999999999 88888888889999999998755 366666788899999999
Q ss_pred CCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121 246 PHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309 (317)
Q Consensus 246 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~ 309 (317)
|++. ++++++.|+.|++||+.+++ ....+..|...|.+++|+|+ +.+|++++.||.+++|+
T Consensus 229 ~~~~-~~~~~~~~~~i~i~~~~~~~-~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 229 PDGY-LLASGSEDGTIRVWDLRTGE-CVQTLSGHTNSVTSLAWSPD-GKRLASGSADGTIRIWD 289 (289)
T ss_pred CCCc-EEEEEcCCCcEEEEEcCCce-eEEEccccCCcEEEEEECCC-CCEEEEecCCCeEEecC
Confidence 9966 78888889999999998765 55667788899999999998 78999999999999996
No 20
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.2e-40 Score=278.71 Aligned_cols=285 Identities=26% Similarity=0.450 Sum_probs=245.0
Q ss_pred CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCC-cceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAP-ALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
...|.++.|+| ++..++++.. ++.+++|+...... ....+ .+|...|++++|+|++ .++++++.|++|
T Consensus 159 ~~sv~~~~fs~--~g~~l~~~~~------~~~i~~~~~~~~~~~~~~~l--~~h~~~v~~~~fs~d~-~~l~s~s~D~ti 227 (456)
T KOG0266|consen 159 CPSVTCVDFSP--DGRALAAASS------DGLIRIWKLEGIKSNLLREL--SGHTRGVSDVAFSPDG-SYLLSGSDDKTL 227 (456)
T ss_pred cCceEEEEEcC--CCCeEEEccC------CCcEEEeecccccchhhccc--cccccceeeeEECCCC-cEEEEecCCceE
Confidence 57789999999 5666776665 89999999955441 11122 4789999999999998 599999999999
Q ss_pred EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121 86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF 165 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 165 (317)
++||+. .....++.+.+|...|++++|+|+++ ++++|+.|++|++||++++++...+.+|...|++++|+++ ++++
T Consensus 228 riwd~~--~~~~~~~~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d-~~~l 303 (456)
T KOG0266|consen 228 RIWDLK--DDGRNLKTLKGHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPD-GNLL 303 (456)
T ss_pred EEeecc--CCCeEEEEecCCCCceEEEEecCCCC-EEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCC-CCEE
Confidence 999993 23477888999999999999999995 9999999999999999999999999999999999999999 8999
Q ss_pred EEEeCCCeEEEEeCCCCC--ceeeeccCccc--eEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCc---
Q 021121 166 CSASGDCTLRIWDVREMG--STMIIPAHEFE--ILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYA--- 238 (317)
Q Consensus 166 ~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~--v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~--- 238 (317)
++++.|+.|++||+.++. +...+..+... ++++.|+| ++.++++++.|+.+++||++.... .....+|...
T Consensus 304 ~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~~~-~~~~~~~~~~~~~ 381 (456)
T KOG0266|consen 304 VSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-NGKYLLSASLDRTLKLWDLRSGKS-VGTYTGHSNLVRC 381 (456)
T ss_pred EEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-CCcEEEEecCCCeEEEEEccCCcc-eeeecccCCccee
Confidence 999999999999999988 45666655554 99999999 999999999999999999998775 6677777664
Q ss_pred eeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecc-cceeEeEEEEeccCCeEEEee--cCCcEEEEecC
Q 021121 239 VRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH-TEFAVGVDMSVLVEGLLASTG--WDELVYVWQQG 311 (317)
Q Consensus 239 v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~--~dg~i~~w~~~ 311 (317)
+.+...++.++ ++++|+.|+.|++||+.++. .+..+.+| ...+..+.++|. ..++++++ .|+.+++|...
T Consensus 382 ~~~~~~~~~~~-~i~sg~~d~~v~~~~~~s~~-~~~~l~~h~~~~~~~~~~~~~-~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 382 IFSPTLSTGGK-LIYSGSEDGSVYVWDSSSGG-ILQRLEGHSKAAVSDLSSHPT-ENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EecccccCCCC-eEEEEeCCceEEEEeCCccc-hhhhhcCCCCCceeccccCCC-cCeeeecCcCCCceEEEecCC
Confidence 44455577787 79999999999999999865 66788999 889999999998 88999988 79999999865
No 21
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.1e-40 Score=251.61 Aligned_cols=283 Identities=22% Similarity=0.306 Sum_probs=249.9
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
|..-|.|+++.| .+.++++++. |+.+.|||+.++.. .+...+|...|..+++++..+ ++++++.|+.|
T Consensus 150 HlgWVr~vavdP--~n~wf~tgs~------DrtikIwDlatg~L---kltltGhi~~vr~vavS~rHp-YlFs~gedk~V 217 (460)
T KOG0285|consen 150 HLGWVRSVAVDP--GNEWFATGSA------DRTIKIWDLATGQL---KLTLTGHIETVRGVAVSKRHP-YLFSAGEDKQV 217 (460)
T ss_pred ccceEEEEeeCC--CceeEEecCC------CceeEEEEcccCeE---EEeecchhheeeeeeecccCc-eEEEecCCCee
Confidence 667899999999 6888888876 99999999998762 233347999999999999884 99999999999
Q ss_pred EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121 86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF 165 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 165 (317)
+.||++.. +.++.+.+|-+.|.|++.+|.-. .|++|+.|..+++||+++...+..+.+|..+|.++.+.|. ...+
T Consensus 218 KCwDLe~n---kvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~-dpqv 292 (460)
T KOG0285|consen 218 KCWDLEYN---KVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT-DPQV 292 (460)
T ss_pred EEEechhh---hhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecC-CCce
Confidence 99999876 88999999999999999999877 9999999999999999999999999999999999999998 5566
Q ss_pred EEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEec
Q 021121 166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFS 245 (317)
Q Consensus 166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~ 245 (317)
++|+.|++|++||++.++....+..|...+.+++.+| ....+++++.| .|+-|++..+.. +..+.+|+.-|++++.+
T Consensus 293 it~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP-~e~~fASas~d-nik~w~~p~g~f-~~nlsgh~~iintl~~n 369 (460)
T KOG0285|consen 293 ITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHP-KENLFASASPD-NIKQWKLPEGEF-LQNLSGHNAIINTLSVN 369 (460)
T ss_pred EEecCCceEEEeeeccCceeEeeecccceeeEEecCC-chhhhhccCCc-cceeccCCccch-hhccccccceeeeeeec
Confidence 7999999999999999999999999999999999999 89999999876 599999998775 66689999999999999
Q ss_pred CCCCeeEEeeecCCeEEEEecccccceeeee---e-----cccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121 246 PHRRNLLASCSYDMTVCLWDFMVEDALVGRY---D-----HHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 246 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~---~-----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
.|+ ++++|+++|.+.+||.+++... +.. . ..+..|++.+|... +..|++|..|.+|++|.-+.
T Consensus 370 sD~--v~~~G~dng~~~fwdwksg~ny-Q~~~t~vqpGSl~sEagI~as~fDkt-g~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 370 SDG--VLVSGGDNGSIMFWDWKSGHNY-QRGQTIVQPGSLESEAGIFASCFDKT-GSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cCc--eEEEcCCceEEEEEecCcCccc-ccccccccCCccccccceeEEeeccc-CceEEeccCCcceEEEeccc
Confidence 887 7999999999999999987622 221 1 12456899999988 78999999999999998764
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7e-40 Score=237.17 Aligned_cols=266 Identities=22% Similarity=0.356 Sum_probs=222.3
Q ss_pred eec-CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC
Q 021121 4 FKT-PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD 82 (317)
Q Consensus 4 ~~~-~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 82 (317)
++| ...|..++..| +++.+++++ .-.|++||+++.++. .......|...|+++.|..+| +.+++|++|
T Consensus 36 iqh~dsqVNrLeiTp--dk~~LAaa~-------~qhvRlyD~~S~np~-Pv~t~e~h~kNVtaVgF~~dg-rWMyTgseD 104 (311)
T KOG0315|consen 36 IQHPDSQVNRLEITP--DKKDLAAAG-------NQHVRLYDLNSNNPN-PVATFEGHTKNVTAVGFQCDG-RWMYTGSED 104 (311)
T ss_pred EecCccceeeEEEcC--Ccchhhhcc-------CCeeEEEEccCCCCC-ceeEEeccCCceEEEEEeecC-eEEEecCCC
Confidence 444 46899999999 455555554 449999999988753 223333688899999999998 699999999
Q ss_pred CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee-ccccceEEEEEecCC
Q 021121 83 GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK-EHAYCVYNATWNPRH 161 (317)
Q Consensus 83 g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~ 161 (317)
|+++|||++.. ...+.+ .|.++|+++..+|+.. .|++|..+|.|++||+.+..+...+- ....+|.++...|+
T Consensus 105 gt~kIWdlR~~---~~qR~~-~~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~d- 178 (311)
T KOG0315|consen 105 GTVKIWDLRSL---SCQRNY-QHNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPD- 178 (311)
T ss_pred ceEEEEeccCc---ccchhc-cCCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCC-
Confidence 99999999874 344434 4779999999999987 89999999999999999886666553 34567999999999
Q ss_pred CCeEEEEeCCCeEEEEeCCCC------CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecC
Q 021121 162 SDVFCSASGDCTLRIWDVREM------GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH 235 (317)
Q Consensus 162 ~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 235 (317)
+.+++.+...|..++|++-+. +++.+++.|+..+..+.++| +.++|++++.|.+++||+..+.-.....+.+|
T Consensus 179 gsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~~kle~~l~gh 257 (311)
T KOG0315|consen 179 GSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDFFKLELVLTGH 257 (311)
T ss_pred CcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCceeeEEEeecC
Confidence 899999999999999998654 45567788999999999999 99999999999999999999873345668899
Q ss_pred CCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEE
Q 021121 236 GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMS 289 (317)
Q Consensus 236 ~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~ 289 (317)
+..++.++||.+++ +|++|+.|+.+++|++..++ .+....+|..+..+++..
T Consensus 258 ~rWvWdc~FS~dg~-YlvTassd~~~rlW~~~~~k-~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 258 QRWVWDCAFSADGE-YLVTASSDHTARLWDLSAGK-EVRQYQGHHKAAVCVALN 309 (311)
T ss_pred CceEEeeeeccCcc-EEEecCCCCceeecccccCc-eeeecCCcccccEEEEee
Confidence 99999999999999 79999999999999999987 456778887777776653
No 23
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.8e-39 Score=254.84 Aligned_cols=290 Identities=22% Similarity=0.280 Sum_probs=238.1
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
|...|.+++|-|..+-+++.++. |+.|.+|+-.+-+ + ......|..-|+|+.|+||| .++++.+.||.|
T Consensus 146 hSr~ins~~~KpsRPfRi~T~sd-------Dn~v~ffeGPPFK--F-k~s~r~HskFV~~VRysPDG-~~Fat~gsDgki 214 (603)
T KOG0318|consen 146 HSRRINSVDFKPSRPFRIATGSD-------DNTVAFFEGPPFK--F-KSSFREHSKFVNCVRYSPDG-SRFATAGSDGKI 214 (603)
T ss_pred cceeEeeeeccCCCceEEEeccC-------CCeEEEeeCCCee--e-eecccccccceeeEEECCCC-CeEEEecCCccE
Confidence 77889999999976666666555 8899999754432 1 22233688899999999998 699999999999
Q ss_pred EEEEeCCCCCCCCceeec---cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEE------------------
Q 021121 86 KIYDTALPPTANPIRSLH---EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRT------------------ 144 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~------------------ 144 (317)
.+||=.++ +.+..+. +|++.|.++.|+||+. .+++++.|.+++|||+.+.+++++
T Consensus 215 ~iyDGktg---e~vg~l~~~~aHkGsIfalsWsPDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqk 290 (603)
T KOG0318|consen 215 YIYDGKTG---EKVGELEDSDAHKGSIFALSWSPDST-QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQK 290 (603)
T ss_pred EEEcCCCc---cEEEEecCCCCccccEEEEEECCCCc-eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeC
Confidence 99997766 5555555 8999999999999998 899999999999999987644333
Q ss_pred -------------------------eeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCcee-----------ee
Q 021121 145 -------------------------FKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM-----------II 188 (317)
Q Consensus 145 -------------------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----------~~ 188 (317)
+.+|...|+++..+|+ +..|++|+.||.|.-||..++..-+ .+
T Consensus 291 d~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d-~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~ 369 (603)
T KOG0318|consen 291 DHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD-GKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGM 369 (603)
T ss_pred CeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC-CCEEEeeccCceEEEEecCCccccccccccccceEEEE
Confidence 2578889999999999 7999999999999999986432110 00
Q ss_pred --------------------------------------------------------------cc--------CccceEEE
Q 021121 189 --------------------------------------------------------------PA--------HEFEILAC 198 (317)
Q Consensus 189 --------------------------------------------------------------~~--------~~~~v~~i 198 (317)
+. ..-...++
T Consensus 370 ~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~v 449 (603)
T KOG0318|consen 370 AASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAV 449 (603)
T ss_pred eecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceE
Confidence 00 00113567
Q ss_pred EecCCCCcEEEEEecCCcEEEEEccCCC-ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeee
Q 021121 199 DWNKYDDCLIASASVDKSIKIWDVRNYR-VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYD 277 (317)
Q Consensus 199 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 277 (317)
+++| +++.++.|+.|+.+++|.+.... ........|.++|++++|+|++. +|+++...+.+.+||+.+.+.....+.
T Consensus 450 Av~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~-yla~~Da~rkvv~yd~~s~~~~~~~w~ 527 (603)
T KOG0318|consen 450 AVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGA-YLAAGDASRKVVLYDVASREVKTNRWA 527 (603)
T ss_pred EEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCc-EEEEeccCCcEEEEEcccCceecceee
Confidence 7888 89999999999999999998755 33445678999999999999999 799999999999999999887667777
Q ss_pred cccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121 278 HHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP 314 (317)
Q Consensus 278 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~ 314 (317)
-|...|.+++|+|+ ..++|||+.|-.|.||++..+.
T Consensus 528 FHtakI~~~aWsP~-n~~vATGSlDt~Viiysv~kP~ 563 (603)
T KOG0318|consen 528 FHTAKINCVAWSPN-NKLVATGSLDTNVIIYSVKKPA 563 (603)
T ss_pred eeeeeEEEEEeCCC-ceEEEeccccceEEEEEccChh
Confidence 89999999999999 7899999999999999998754
No 24
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2e-39 Score=246.59 Aligned_cols=284 Identities=17% Similarity=0.213 Sum_probs=240.2
Q ss_pred ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121 5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGS 84 (317)
Q Consensus 5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 84 (317)
.|..+|++++.+| +..++++++. |..-.+|++..+.. .....+|+..|+++.|+.+| .+||+|..+|.
T Consensus 62 ~H~~svFavsl~P--~~~l~aTGGg------DD~AflW~~~~ge~---~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~ 129 (399)
T KOG0296|consen 62 KHTDSVFAVSLHP--NNNLVATGGG------DDLAFLWDISTGEF---AGELTGHKDSVTCCSFSHDG-TLLATGDMSGK 129 (399)
T ss_pred hcCCceEEEEeCC--CCceEEecCC------CceEEEEEccCCcc---eeEecCCCCceEEEEEccCc-eEEEecCCCcc
Confidence 3889999999999 6788888876 88999999998762 23334899999999999998 69999999999
Q ss_pred EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCe
Q 021121 85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDV 164 (317)
Q Consensus 85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 164 (317)
|+||+..++ .....+......+.-+.|+|.+. .|++|+.||.+.+|.+.+....+.+.+|..++++=.|.|+ ++.
T Consensus 130 v~v~~~stg---~~~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pd-GKr 204 (399)
T KOG0296|consen 130 VLVFKVSTG---GEQWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPD-GKR 204 (399)
T ss_pred EEEEEcccC---ceEEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCC-Cce
Confidence 999999876 55555555667888999999887 9999999999999999998888999999999999999999 899
Q ss_pred EEEEeCCCeEEEEeCCCCCceeeeccC---------------------------------------------------cc
Q 021121 165 FCSASGDCTLRIWDVREMGSTMIIPAH---------------------------------------------------EF 193 (317)
Q Consensus 165 l~~~~~dg~i~i~d~~~~~~~~~~~~~---------------------------------------------------~~ 193 (317)
++++..||+|++||+.++.++..+... +.
T Consensus 205 ~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~ 284 (399)
T KOG0296|consen 205 ILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEE 284 (399)
T ss_pred EEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchh
Confidence 999999999999999988776655310 00
Q ss_pred ceEEEEecCC--CCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccc
Q 021121 194 EILACDWNKY--DDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDA 271 (317)
Q Consensus 194 ~v~~i~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~ 271 (317)
.+.|+.+.|. .-.+.|+|+-||+|.|||+...+ ++..-.|..+|..+.|-+ .. +|++++.+|.|+.||.++++
T Consensus 285 ~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~--~R~~c~he~~V~~l~w~~-t~-~l~t~c~~g~v~~wDaRtG~- 359 (399)
T KOG0296|consen 285 LDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST--LRHICEHEDGVTKLKWLN-TD-YLLTACANGKVRQWDARTGQ- 359 (399)
T ss_pred hhhhhhhcccccccchhhcccccceEEEEecccch--hheeccCCCceEEEEEcC-cc-hheeeccCceEEeeeccccc-
Confidence 1122222221 33468899999999999998765 455567999999999998 44 69999999999999999997
Q ss_pred eeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121 272 LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG 311 (317)
Q Consensus 272 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~ 311 (317)
+...+.+|...|.+++.+|+ .++++|+|.|+..+||+..
T Consensus 360 l~~~y~GH~~~Il~f~ls~~-~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 360 LKFTYTGHQMGILDFALSPQ-KRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEEEecCchheeEEEEcCC-CcEEEEecCCCeEEEEecC
Confidence 77899999999999999999 8999999999999999874
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.3e-39 Score=266.30 Aligned_cols=287 Identities=21% Similarity=0.326 Sum_probs=243.8
Q ss_pred CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEE
Q 021121 7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVK 86 (317)
Q Consensus 7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 86 (317)
..+|..++|+.. .+-++.+++. -|.+.||+.+...- .+...+|...+++++++||| .++++|+.||.|+
T Consensus 307 ~~~I~t~~~N~t-GDWiA~g~~k------lgQLlVweWqsEsY---VlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVK 375 (893)
T KOG0291|consen 307 DQKILTVSFNST-GDWIAFGCSK------LGQLLVWEWQSESY---VLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVK 375 (893)
T ss_pred cceeeEEEeccc-CCEEEEcCCc------cceEEEEEeeccce---eeeccccccceeeEEECCCC-cEEEeccCCCcEE
Confidence 367788999885 4566666664 68999999988752 34444789999999999999 5999999999999
Q ss_pred EEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecc-ccceEEEEEecCCCCeE
Q 021121 87 IYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEH-AYCVYNATWNPRHSDVF 165 (317)
Q Consensus 87 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l 165 (317)
|||...+ -+..++..|.+.|+.+.|+..++ .+++++.||+|+.||+......+++... .-...|++..|. +.++
T Consensus 376 vWn~~Sg---fC~vTFteHts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~s-GelV 450 (893)
T KOG0291|consen 376 VWNTQSG---FCFVTFTEHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPS-GELV 450 (893)
T ss_pred EEeccCc---eEEEEeccCCCceEEEEEEecCC-EEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCC-CCEE
Confidence 9999876 88999999999999999999988 9999999999999999999998888754 345788999998 8888
Q ss_pred EEEeCCC-eEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEe
Q 021121 166 CSASGDC-TLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKF 244 (317)
Q Consensus 166 ~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~ 244 (317)
++|+.|. .|++|++++|+.+-.+.+|++||.+++|+| .+..|++++.|.+|++||+-.....+..+. +...+..++|
T Consensus 451 ~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsf 528 (893)
T KOG0291|consen 451 CAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSF 528 (893)
T ss_pred EeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEE
Confidence 8888776 499999999999999999999999999999 999999999999999999987655455555 5668999999
Q ss_pred cCCCCeeEEeeecCCeEEEEecccccce-------------------eeeeecccceeEeEEEEeccCCeEEEeecCCcE
Q 021121 245 SPHRRNLLASCSYDMTVCLWDFMVEDAL-------------------VGRYDHHTEFAVGVDMSVLVEGLLASTGWDELV 305 (317)
Q Consensus 245 ~~~~~~~l~~~~~d~~i~vwd~~~~~~~-------------------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 305 (317)
.|+|+. |+++..||.|.+||....... ...........+.+++++| +..+++||....|
T Consensus 529 rPdG~e-laVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaD-G~~IlAgG~sn~i 606 (893)
T KOG0291|consen 529 RPDGKE-LAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSAD-GKCILAGGESNSI 606 (893)
T ss_pred cCCCCe-EEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCC-CCEEEecCCcccE
Confidence 999995 999999999999998765311 1111122457899999999 8899999999999
Q ss_pred EEEecCCC
Q 021121 306 YVWQQGMD 313 (317)
Q Consensus 306 ~~w~~~~~ 313 (317)
++|++.++
T Consensus 607 CiY~v~~~ 614 (893)
T KOG0291|consen 607 CIYDVPEG 614 (893)
T ss_pred EEEECchh
Confidence 99999764
No 26
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.4e-39 Score=238.12 Aligned_cols=248 Identities=21% Similarity=0.341 Sum_probs=220.9
Q ss_pred ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEc
Q 021121 57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTV 136 (317)
Q Consensus 57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~ 136 (317)
.+|.+.|.++.|++|. +.+++++.||.+.|||.-+. .....+.-...-|..++|+|.++ +++.|+.|+...||++
T Consensus 52 kGH~~Ki~~~~ws~Ds-r~ivSaSqDGklIvWDs~Tt---nK~haipl~s~WVMtCA~sPSg~-~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 52 KGHLNKIYAMDWSTDS-RRIVSASQDGKLIVWDSFTT---NKVHAIPLPSSWVMTCAYSPSGN-FVACGGLDNKCSIYPL 126 (343)
T ss_pred cccccceeeeEecCCc-CeEEeeccCCeEEEEEcccc---cceeEEecCceeEEEEEECCCCC-eEEecCcCceeEEEec
Confidence 3899999999999997 69999999999999998765 55666666788999999999998 9999999999999999
Q ss_pred CCC------ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEE
Q 021121 137 DRP------TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIAS 210 (317)
Q Consensus 137 ~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~ 210 (317)
.+. +..+.+.+|.+.+.++.|.++ ..|++++.|.+..+||+++++.+..+.+|...|.+++++|.+++.+++
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvS 204 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVS 204 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEe
Confidence 865 455678899999999999975 456799999999999999999999999999999999999989999999
Q ss_pred EecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeee--cccceeEeEEE
Q 021121 211 ASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYD--HHTEFAVGVDM 288 (317)
Q Consensus 211 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~ 288 (317)
|+-|+..++||+|.+. ..+.+.+|...|++++|.|+|. -+++|++|++.++||++..+++ ..+. ....+|++++|
T Consensus 205 g~cD~~aklWD~R~~~-c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~~~-a~ys~~~~~~gitSv~F 281 (343)
T KOG0286|consen 205 GGCDKSAKLWDVRSGQ-CVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRADQEL-AVYSHDSIICGITSVAF 281 (343)
T ss_pred cccccceeeeeccCcc-eeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCCcEE-eeeccCcccCCceeEEE
Confidence 9999999999999975 5999999999999999999998 5999999999999999997643 3333 33468999999
Q ss_pred EeccCCeEEEeecCCcEEEEecCCCCC
Q 021121 289 SVLVEGLLASTGWDELVYVWQQGMDPR 315 (317)
Q Consensus 289 ~~~~~~~l~s~~~dg~i~~w~~~~~~~ 315 (317)
|.. +++|.+|..|..+.+||.-...+
T Consensus 282 S~S-GRlLfagy~d~~c~vWDtlk~e~ 307 (343)
T KOG0286|consen 282 SKS-GRLLFAGYDDFTCNVWDTLKGER 307 (343)
T ss_pred ccc-ccEEEeeecCCceeEeeccccce
Confidence 998 89999999999999999765443
No 27
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.6e-41 Score=261.38 Aligned_cols=243 Identities=25% Similarity=0.423 Sum_probs=218.4
Q ss_pred CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC
Q 021121 59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR 138 (317)
Q Consensus 59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 138 (317)
.+.+|..+.|.|+| +.|++|+..|.+.+|+...- .....++.|..+|.++.|++++. .+++|+.+|.|++|+..-
T Consensus 95 vkc~V~~v~WtPeG-RRLltgs~SGEFtLWNg~~f---nFEtilQaHDs~Vr~m~ws~~g~-wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEG-RRLLTGSQSGEFTLWNGTSF---NFETILQAHDSPVRTMKWSHNGT-WMISGDKGGMIKYWQPNM 169 (464)
T ss_pred cccceeeEEEcCCC-ceeEeecccccEEEecCcee---eHHHHhhhhcccceeEEEccCCC-EEEEcCCCceEEecccch
Confidence 45679999999998 69999999999999997433 44455678999999999999998 999999999999999875
Q ss_pred CceeEEeec-cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcE
Q 021121 139 PTSVRTFKE-HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSI 217 (317)
Q Consensus 139 ~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i 217 (317)
. .++.+.. |...|.+++|+|. ...|+++++||+|+|||....+....+.+|.-.|.+++|+| ...++++++.|..|
T Consensus 170 n-nVk~~~ahh~eaIRdlafSpn-DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlV 246 (464)
T KOG0284|consen 170 N-NVKIIQAHHAEAIRDLAFSPN-DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLV 246 (464)
T ss_pred h-hhHHhhHhhhhhhheeccCCC-CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCcee
Confidence 4 3444444 5589999999997 78889999999999999999999999999999999999999 88899999999999
Q ss_pred EEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEE
Q 021121 218 KIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLA 297 (317)
Q Consensus 218 ~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 297 (317)
++||.+++++ +.++..|+..|..+.|+|++. +|+++|.|..++++|+++-+ -+..+++|...++++.|+|....+|.
T Consensus 247 KlWDprSg~c-l~tlh~HKntVl~~~f~~n~N-~Llt~skD~~~kv~DiR~mk-El~~~r~Hkkdv~~~~WhP~~~~lft 323 (464)
T KOG0284|consen 247 KLWDPRSGSC-LATLHGHKNTVLAVKFNPNGN-WLLTGSKDQSCKVFDIRTMK-ELFTYRGHKKDVTSLTWHPLNESLFT 323 (464)
T ss_pred EeecCCCcch-hhhhhhccceEEEEEEcCCCC-eeEEccCCceEEEEehhHhH-HHHHhhcchhhheeecccccccccee
Confidence 9999999875 888899999999999999996 89999999999999999766 45788999999999999999888999
Q ss_pred EeecCCcEEEEecCC
Q 021121 298 STGWDELVYVWQQGM 312 (317)
Q Consensus 298 s~~~dg~i~~w~~~~ 312 (317)
+|+.||.|..|.+..
T Consensus 324 sgg~Dgsvvh~~v~~ 338 (464)
T KOG0284|consen 324 SGGSDGSVVHWVVGL 338 (464)
T ss_pred eccCCCceEEEeccc
Confidence 999999999999983
No 28
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.2e-40 Score=269.82 Aligned_cols=289 Identities=23% Similarity=0.330 Sum_probs=251.5
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
.++.|.+|+|--.++..+++++. .+.+++|++.... .+ ...+|.+.|.++....+| -+|++|+.|.++
T Consensus 322 ~ndEI~Dm~~lG~e~~~laVATN-------s~~lr~y~~~~~~--c~--ii~GH~e~vlSL~~~~~g-~llat~sKD~sv 389 (775)
T KOG0319|consen 322 YNDEILDMKFLGPEESHLAVATN-------SPELRLYTLPTSY--CQ--IIPGHTEAVLSLDVWSSG-DLLATGSKDKSV 389 (775)
T ss_pred CchhheeeeecCCccceEEEEeC-------CCceEEEecCCCc--eE--EEeCchhheeeeeecccC-cEEEEecCCceE
Confidence 45778899987666778888877 7799999887765 22 334899999999955566 599999999999
Q ss_pred EEEEeCCC-CCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce-----eE----EeeccccceEEE
Q 021121 86 KIYDTALP-PTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-----VR----TFKEHAYCVYNA 155 (317)
Q Consensus 86 ~v~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-----~~----~~~~~~~~v~~~ 155 (317)
++|.+++. ....++....+|...|.+++++..+..+|+++|.|+++++|++...+. .. ....|...|+++
T Consensus 390 ilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~V 469 (775)
T KOG0319|consen 390 ILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCV 469 (775)
T ss_pred EEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccce
Confidence 99999543 223455667799999999999988888999999999999999976211 11 234689999999
Q ss_pred EEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecC
Q 021121 156 TWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH 235 (317)
Q Consensus 156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 235 (317)
+.+|+ ..+++||+.|.+.++|++.+......+.+|...+.++.|+| ..+.+++++.|++|+||.+.+.. ++.++.+|
T Consensus 470 aia~n-dkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fS-ClkT~eGH 546 (775)
T KOG0319|consen 470 AIAPN-DKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFS-CLKTFEGH 546 (775)
T ss_pred EecCC-CceEEecccccceeeecccCceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccce-eeeeecCc
Confidence 99999 89999999999999999999999999999999999999999 89999999999999999999977 59999999
Q ss_pred CCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121 236 GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 236 ~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
...|..+.|-.+++ .|++++.||.|++|++.+.+ +...++.|+..|.+++.+|. ..+++||+.||.|.+|.=.+
T Consensus 547 ~~aVlra~F~~~~~-qliS~~adGliKlWnikt~e-C~~tlD~H~DrvWaL~~~~~-~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 547 TSAVLRASFIRNGK-QLISAGADGLIKLWNIKTNE-CEMTLDAHNDRVWALSVSPL-LDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred cceeEeeeeeeCCc-EEEeccCCCcEEEEeccchh-hhhhhhhccceeEEEeecCc-cceeEecCCCeEEEEeecCc
Confidence 99999999999999 59999999999999999987 67899999999999999998 77999999999999997544
No 29
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-39 Score=264.06 Aligned_cols=286 Identities=23% Similarity=0.329 Sum_probs=246.9
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeee-cCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAF-DTADGVYDLAWSESHDSLLIAAVADGS 84 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~ 84 (317)
+...|.++.|+|. ..-++++.. +|.|.||+.++.. .+..+ -...+|++..|-+.- +.+++|+.|..
T Consensus 12 rSdRVKsVd~HPt-ePw~la~Ly-------nG~V~IWnyetqt----mVksfeV~~~PvRa~kfiaRk-nWiv~GsDD~~ 78 (794)
T KOG0276|consen 12 RSDRVKSVDFHPT-EPWILAALY-------NGDVQIWNYETQT----MVKSFEVSEVPVRAAKFIARK-NWIVTGSDDMQ 78 (794)
T ss_pred cCCceeeeecCCC-CceEEEeee-------cCeeEEEecccce----eeeeeeecccchhhheeeecc-ceEEEecCCce
Confidence 6788999999997 566666666 8999999998754 22323 245689999999875 69999999999
Q ss_pred EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC-ceeEEeeccccceEEEEEecCCCC
Q 021121 85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP-TSVRTFKEHAYCVYNATWNPRHSD 163 (317)
Q Consensus 85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~ 163 (317)
|+||+..+. +.+..+..|..-|.+++.+|..+ ++++++.|-.|++||.+.. .+.+.+.+|+.-|.+++|+|.+.+
T Consensus 79 IrVfnynt~---ekV~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~n 154 (794)
T KOG0276|consen 79 IRVFNYNTG---EKVKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPN 154 (794)
T ss_pred EEEEecccc---eeeEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcc
Confidence 999999877 88999999999999999999998 9999999999999999876 677889999999999999999999
Q ss_pred eEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCC-CCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEE
Q 021121 164 VFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKY-DDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKV 242 (317)
Q Consensus 164 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~ 242 (317)
.+++++-|++|++|.+.+..+..++.+|...|+|+.+-+. +..+|++|+.|.+|+|||.++.. +++++.+|...|..+
T Consensus 155 tFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~-CV~TLeGHt~Nvs~v 233 (794)
T KOG0276|consen 155 TFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS-CVQTLEGHTNNVSFV 233 (794)
T ss_pred ceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH-HHHHhhcccccceEE
Confidence 9999999999999999999999999999999999999872 34699999999999999999855 699999999999999
Q ss_pred EecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121 243 KFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 243 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
.|+|.-+ ++++|++||+++||+..+-+ +...+.-.-+.+.+++-.+. ++.++.|.+.|.| +.++..+
T Consensus 234 ~fhp~lp-iiisgsEDGTvriWhs~Ty~-lE~tLn~gleRvW~I~~~k~-~~~i~vG~Deg~i-~v~lgre 300 (794)
T KOG0276|consen 234 FFHPELP-IIISGSEDGTVRIWNSKTYK-LEKTLNYGLERVWCIAAHKG-DGKIAVGFDEGSV-TVKLGRE 300 (794)
T ss_pred EecCCCc-EEEEecCCccEEEecCccee-hhhhhhcCCceEEEEeecCC-CCeEEEeccCCcE-EEEccCC
Confidence 9999999 89999999999999987765 44455555677999988886 5677777766655 4455443
No 30
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-38 Score=252.85 Aligned_cols=290 Identities=18% Similarity=0.309 Sum_probs=236.4
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeee-eecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELV-AFDTADGVYDLAWSESHDSLLIAAVADGS 84 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 84 (317)
|..-|.|+.|+|+ ..+|+.+++ ||+|.+||-.+++. ...+. ...|.+.|.+++|+||+ ..+++++.|.+
T Consensus 189 HskFV~~VRysPD-G~~Fat~gs-------Dgki~iyDGktge~-vg~l~~~~aHkGsIfalsWsPDs-~~~~T~SaDkt 258 (603)
T KOG0318|consen 189 HSKFVNCVRYSPD-GSRFATAGS-------DGKIYIYDGKTGEK-VGELEDSDAHKGSIFALSWSPDS-TQFLTVSADKT 258 (603)
T ss_pred cccceeeEEECCC-CCeEEEecC-------CccEEEEcCCCccE-EEEecCCCCccccEEEEEECCCC-ceEEEecCCce
Confidence 6667899999995 444444444 99999999887763 22222 33699999999999998 69999999999
Q ss_pred EEEEEeCCC----------------------------------------CCCCCceeeccCCcceEEEEEecCCCCEEEE
Q 021121 85 VKIYDTALP----------------------------------------PTANPIRSLHEHTREVHSADYNPTRRDSFIT 124 (317)
Q Consensus 85 i~v~~~~~~----------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 124 (317)
++|||+... ....++..+.+|...|+++..+|++. +|++
T Consensus 259 ~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~-~i~S 337 (603)
T KOG0318|consen 259 IKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK-TIYS 337 (603)
T ss_pred EEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC-EEEe
Confidence 999998765 11224455678999999999999997 9999
Q ss_pred EcCCCEEEEEEcCCCcee-----------EEe------------------------------------------------
Q 021121 125 SSWDDTVKLWTVDRPTSV-----------RTF------------------------------------------------ 145 (317)
Q Consensus 125 ~~~dg~v~iwd~~~~~~~-----------~~~------------------------------------------------ 145 (317)
|+.||.|.-|+..++..- ..+
T Consensus 338 gsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~ 417 (603)
T KOG0318|consen 338 GSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDG 417 (603)
T ss_pred eccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCC
Confidence 999999999998654211 000
Q ss_pred --------------ec--------cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc--eeeeccCccceEEEEec
Q 021121 146 --------------KE--------HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS--TMIIPAHEFEILACDWN 201 (317)
Q Consensus 146 --------------~~--------~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~i~~~ 201 (317)
+. ......+++++|+ +..+++|+.||.|++|.+...+. ......|..++++++++
T Consensus 418 ~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~-~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vayS 496 (603)
T KOG0318|consen 418 GTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPD-GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYS 496 (603)
T ss_pred CEEEEEecCcEEEEecCCcceeeccccccceEEEcCC-CCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEEC
Confidence 00 0113467788888 89999999999999999987543 33456799999999999
Q ss_pred CCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccc
Q 021121 202 KYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE 281 (317)
Q Consensus 202 ~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 281 (317)
| ++.+|+++...+.+.+||..+.+.......-|...|.+++|+|+.. ++|+|+.|..|.||++......+.....|..
T Consensus 497 p-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiysv~kP~~~i~iknAH~~ 574 (603)
T KOG0318|consen 497 P-DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYSVKKPAKHIIIKNAHLG 574 (603)
T ss_pred C-CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEEccChhhheEecccccc
Confidence 9 9999999999999999999987654445556999999999999998 7999999999999999988766777788998
Q ss_pred eeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121 282 FAVGVDMSVLVEGLLASTGWDELVYVWQQG 311 (317)
Q Consensus 282 ~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~ 311 (317)
.|+.+.|-. +..+++.|.|..|++|++.
T Consensus 575 gVn~v~wld--e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 575 GVNSVAWLD--ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred CceeEEEec--CceEEeccCcceeEEeccc
Confidence 999999986 5799999999999999975
No 31
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-40 Score=238.73 Aligned_cols=252 Identities=21% Similarity=0.453 Sum_probs=225.7
Q ss_pred ceecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC
Q 021121 3 VFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD 82 (317)
Q Consensus 3 ~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 82 (317)
.|+..+.++.++|++..++.++++.+ ||.+++||+.....++...+ +|+..|.++.|++.....+++++.|
T Consensus 56 s~d~~D~LfdV~Wse~~e~~~~~a~G-------DGSLrl~d~~~~s~Pi~~~k--EH~~EV~Svdwn~~~r~~~ltsSWD 126 (311)
T KOG0277|consen 56 SYDTEDGLFDVAWSENHENQVIAASG-------DGSLRLFDLTMPSKPIHKFK--EHKREVYSVDWNTVRRRIFLTSSWD 126 (311)
T ss_pred eeecccceeEeeecCCCcceEEEEec-------CceEEEeccCCCCcchhHHH--hhhhheEEeccccccceeEEeeccC
Confidence 46778899999999988888888887 99999999876654444433 7999999999999877889999999
Q ss_pred CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCC
Q 021121 83 GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS 162 (317)
Q Consensus 83 g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (317)
++|++|+...+ ..+.++.+|...|....|+|..++++++++.|+.+++||++.......+..|..++.++.|+..+.
T Consensus 127 ~TiKLW~~~r~---~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~ 203 (311)
T KOG0277|consen 127 GTIKLWDPNRP---NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH 203 (311)
T ss_pred CceEeecCCCC---cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCC
Confidence 99999998776 788889999999999999999888999999999999999987655556889999999999999889
Q ss_pred CeEEEEeCCCeEEEEeCCCC-CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeE
Q 021121 163 DVFCSASGDCTLRIWDVREM-GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241 (317)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~ 241 (317)
++++||+.|+.|+.||+++. .++..+.+|.-.|+.+.|+|....+|++++.|-++++||.......+.+..-|..-+..
T Consensus 204 ~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g 283 (311)
T KOG0277|consen 204 NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCG 283 (311)
T ss_pred cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEec
Confidence 99999999999999999986 46778889999999999999889999999999999999998777677788889999999
Q ss_pred EEecCCCCeeEEeeecCCeEEEEec
Q 021121 242 VKFSPHRRNLLASCSYDMTVCLWDF 266 (317)
Q Consensus 242 ~~~~~~~~~~l~~~~~d~~i~vwd~ 266 (317)
+.|++....++|+.+.|..++||+.
T Consensus 284 ~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 284 LDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccccccCceeeecccccceeeecc
Confidence 9999987778999999999999984
No 32
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.6e-39 Score=238.76 Aligned_cols=249 Identities=21% Similarity=0.355 Sum_probs=220.1
Q ss_pred eeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEE
Q 021121 55 VAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLW 134 (317)
Q Consensus 55 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw 134 (317)
...+|++.|+.+.|+|+| .+|++|+.|..|.+|++... .+....+++|++.|..+.|.++++ .+++++.|.+|+.|
T Consensus 42 ~l~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~gd--ceN~~~lkgHsgAVM~l~~~~d~s-~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYGD--CENFWVLKGHSGAVMELHGMRDGS-HILSCGTDKTVRGW 117 (338)
T ss_pred hcCCCcceEEEEEECCCC-CeEeecCCcceEEEEecccc--ccceeeeccccceeEeeeeccCCC-EEEEecCCceEEEE
Confidence 344899999999999988 69999999999999997633 355667789999999999999998 99999999999999
Q ss_pred EcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecC
Q 021121 135 TVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVD 214 (317)
Q Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d 214 (317)
|+++++.+++++.|...++++.-+..+..++.+++.||++++||+|+.+.++.+. ...+++++.|.. .+..+.+|+-|
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d-~s~qv~sggId 195 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKD-TSDQVISGGID 195 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecc-cccceeecccc
Confidence 9999999999999999999999666677889999999999999999988888775 567899999998 88899999999
Q ss_pred CcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccc---cceeeeeeccc----ceeEeEE
Q 021121 215 KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE---DALVGRYDHHT----EFAVGVD 287 (317)
Q Consensus 215 ~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~---~~~~~~~~~~~----~~v~~~~ 287 (317)
+.|++||++... ....+.+|..+|+.+..+|+|. ++.+-+.|.++++||++.- ++++..+.+|. .....++
T Consensus 196 n~ikvWd~r~~d-~~~~lsGh~DtIt~lsls~~gs-~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs 273 (338)
T KOG0265|consen 196 NDIKVWDLRKND-GLYTLSGHADTITGLSLSRYGS-FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS 273 (338)
T ss_pred CceeeeccccCc-ceEEeecccCceeeEEeccCCC-ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence 999999999866 4889999999999999999999 6999999999999998753 34456666653 3456789
Q ss_pred EEeccCCeEEEeecCCcEEEEecCC
Q 021121 288 MSVLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 288 ~~~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
|+|+ +..+.+|+.|..+++||...
T Consensus 274 wsp~-~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 274 WSPN-GTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred ccCC-CCccccccccceEEEeeccc
Confidence 9998 88999999999999999865
No 33
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.6e-38 Score=260.19 Aligned_cols=284 Identities=20% Similarity=0.330 Sum_probs=244.7
Q ss_pred CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeec-CCCCeeEEEecCCCCCeEEEEEcC-Ce
Q 021121 7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFD-TADGVYDLAWSESHDSLLIAAVAD-GS 84 (317)
Q Consensus 7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d-g~ 84 (317)
+..+++.+|+| ...+++.+-. +|...+|++..-. .+.... ...+|..++|+..|+ .||.|+.. |.
T Consensus 265 ~~kvtaa~fH~--~t~~lvvgFs------sG~f~LyelP~f~----lih~LSis~~~I~t~~~N~tGD-WiA~g~~klgQ 331 (893)
T KOG0291|consen 265 SSKVTAAAFHK--GTNLLVVGFS------SGEFGLYELPDFN----LIHSLSISDQKILTVSFNSTGD-WIAFGCSKLGQ 331 (893)
T ss_pred ccceeeeeccC--CceEEEEEec------CCeeEEEecCCce----EEEEeecccceeeEEEecccCC-EEEEcCCccce
Confidence 36899999999 6666666664 8999999998654 333333 336799999999985 77776654 89
Q ss_pred EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCe
Q 021121 85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDV 164 (317)
Q Consensus 85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 164 (317)
+-||+.... .-+...++|...+++++++|||+ ++++|+.||.|+|||..++-+..++..|++.|+.+.|+.. ++.
T Consensus 332 LlVweWqsE---sYVlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~-g~~ 406 (893)
T KOG0291|consen 332 LLVWEWQSE---SYVLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTAR-GNV 406 (893)
T ss_pred EEEEEeecc---ceeeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEec-CCE
Confidence 999999865 66667789999999999999998 9999999999999999999999999999999999999998 899
Q ss_pred EEEEeCCCeEEEEeCCCCCceeeeccC-ccceEEEEecCCCCcEEEEEecCC-cEEEEEccCCCccEEEEecCCCceeEE
Q 021121 165 FCSASGDCTLRIWDVREMGSTMIIPAH-EFEILACDWNKYDDCLIASASVDK-SIKIWDVRNYRVPIAVLNGHGYAVRKV 242 (317)
Q Consensus 165 l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~~~~~~~v~~~ 242 (317)
+++.+-||+|+.||+...+..+++... .....|++..| .|.++.+|+.|. .|.+|++++++. +..+.+|.++|.++
T Consensus 407 llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGql-lDiLsGHEgPVs~l 484 (893)
T KOG0291|consen 407 LLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQL-LDILSGHEGPVSGL 484 (893)
T ss_pred EEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCee-eehhcCCCCcceee
Confidence 999999999999999998888888643 34578999999 899999998886 599999999874 88999999999999
Q ss_pred EecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121 243 KFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 243 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
+|+|.+. +|++++.|.+|++||+-.....+..++ +...+..++|+|+ ++.|+++..||.|.+||....
T Consensus 485 ~f~~~~~-~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPd-G~elaVaTldgqItf~d~~~~ 552 (893)
T KOG0291|consen 485 SFSPDGS-LLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPD-GKELAVATLDGQITFFDIKEA 552 (893)
T ss_pred EEccccC-eEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCC-CCeEEEEEecceEEEEEhhhc
Confidence 9999999 799999999999999987754444444 4567999999999 889999999999999998764
No 34
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=9.1e-39 Score=244.18 Aligned_cols=288 Identities=25% Similarity=0.401 Sum_probs=243.4
Q ss_pred ceecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCC--CCeEEEEE
Q 021121 3 VFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESH--DSLLIAAV 80 (317)
Q Consensus 3 ~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~ 80 (317)
.|.|++-|.++.-.+ +.++.+++ ||.+++||..... .....+|.++|.+++|...+ ...+++++
T Consensus 101 ~~~hdDWVSsv~~~~---~~IltgsY-------Dg~~riWd~~Gk~----~~~~~Ght~~ik~v~~v~~n~~~~~fvsas 166 (423)
T KOG0313|consen 101 CFLHDDWVSSVKGAS---KWILTGSY-------DGTSRIWDLKGKS----IKTIVGHTGPIKSVAWVIKNSSSCLFVSAS 166 (423)
T ss_pred cccchhhhhhhcccC---ceEEEeec-------CCeeEEEecCCce----EEEEecCCcceeeeEEEecCCccceEEEec
Confidence 345666777777665 67777777 9999999987653 34445899999998886433 23699999
Q ss_pred cCCeEEEEEeCCCCCC-CCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC---------------------
Q 021121 81 ADGSVKIYDTALPPTA-NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR--------------------- 138 (317)
Q Consensus 81 ~dg~i~v~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~--------------------- 138 (317)
.|.++++|.++.+... +.+....+|...|.++...+++. .+++|+.|..|.+|+.++
T Consensus 167 ~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~ 245 (423)
T KOG0313|consen 167 MDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREK 245 (423)
T ss_pred CCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhh
Confidence 9999999999876322 23333459999999999999998 999999999999999321
Q ss_pred ----CceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecC
Q 021121 139 ----PTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVD 214 (317)
Q Consensus 139 ----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d 214 (317)
+.++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.++.....+.+ ...++++..+| ..++|++|+.|
T Consensus 246 ~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~-~~~Ll~~gssd 321 (423)
T KOG0313|consen 246 EGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSP-LSKLLASGSSD 321 (423)
T ss_pred cccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeec-CcceeEeeccc-ccceeeecCCC
Confidence 134556789999999999997 56788999999999999999998888774 55789999999 99999999999
Q ss_pred CcEEEEEccCCC--ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEecc
Q 021121 215 KSIKIWDVRNYR--VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLV 292 (317)
Q Consensus 215 ~~i~v~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 292 (317)
..|++||.|++. .....+.+|+..|.++.|+|...++|++|+.|+++++||+++.+..+..+.+|...|.++.|..
T Consensus 322 r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-- 399 (423)
T KOG0313|consen 322 RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-- 399 (423)
T ss_pred CceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC--
Confidence 999999999864 3456788999999999999999999999999999999999999878889999999999999996
Q ss_pred CCeEEEeecCCcEEEEecC
Q 021121 293 EGLLASTGWDELVYVWQQG 311 (317)
Q Consensus 293 ~~~l~s~~~dg~i~~w~~~ 311 (317)
+..+++||.|.+|+++.-.
T Consensus 400 ~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 400 GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CceEEeccCcceEEEeccc
Confidence 6799999999999998754
No 35
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.1e-39 Score=247.58 Aligned_cols=244 Identities=22% Similarity=0.378 Sum_probs=225.8
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD 137 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 137 (317)
+|.+.|.|+++.|-+ ..+++|+.|++++|||+.++ +...++.+|...|..+++++..+ ++++++.|+.|+.||++
T Consensus 149 gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg---~LkltltGhi~~vr~vavS~rHp-YlFs~gedk~VKCwDLe 223 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLATG---QLKLTLTGHIETVRGVAVSKRHP-YLFSAGEDKQVKCWDLE 223 (460)
T ss_pred hccceEEEEeeCCCc-eeEEecCCCceeEEEEcccC---eEEEeecchhheeeeeeecccCc-eEEEecCCCeeEEEech
Confidence 688999999999975 69999999999999999987 78888999999999999999988 99999999999999999
Q ss_pred CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcE
Q 021121 138 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSI 217 (317)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i 217 (317)
..+.++.+.+|-+.|.+++.+|. -..|++|+.|.++++||+|+...+..+.+|..+|.++.+.| ....+++|+.|++|
T Consensus 224 ~nkvIR~YhGHlS~V~~L~lhPT-ldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~-~dpqvit~S~D~tv 301 (460)
T KOG0285|consen 224 YNKVIRHYHGHLSGVYCLDLHPT-LDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP-TDPQVITGSHDSTV 301 (460)
T ss_pred hhhhHHHhccccceeEEEecccc-ceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeec-CCCceEEecCCceE
Confidence 99999999999999999999998 88999999999999999999999999999999999999999 67789999999999
Q ss_pred EEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEE
Q 021121 218 KIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLA 297 (317)
Q Consensus 218 ~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 297 (317)
++||++.++. ...+..|+..|++++.+|... ++++++.|. |+-|++..++ .+..+.+|...|++++...| .+++
T Consensus 302 rlWDl~agkt-~~tlt~hkksvral~lhP~e~-~fASas~dn-ik~w~~p~g~-f~~nlsgh~~iintl~~nsD--~v~~ 375 (460)
T KOG0285|consen 302 RLWDLRAGKT-MITLTHHKKSVRALCLHPKEN-LFASASPDN-IKQWKLPEGE-FLQNLSGHNAIINTLSVNSD--GVLV 375 (460)
T ss_pred EEeeeccCce-eEeeecccceeeEEecCCchh-hhhccCCcc-ceeccCCccc-hhhccccccceeeeeeeccC--ceEE
Confidence 9999999875 777888999999999999886 788888775 9999999887 55669999999999998874 6999
Q ss_pred EeecCCcEEEEecCCCC
Q 021121 298 STGWDELVYVWQQGMDP 314 (317)
Q Consensus 298 s~~~dg~i~~w~~~~~~ 314 (317)
+|++.|.+.+||...++
T Consensus 376 ~G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 376 SGGDNGSIMFWDWKSGH 392 (460)
T ss_pred EcCCceEEEEEecCcCc
Confidence 99999999999998764
No 36
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2e-40 Score=260.51 Aligned_cols=286 Identities=21% Similarity=0.352 Sum_probs=243.5
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
|...|.++.|.|. .+.|+++++. |+.|+||++-.....++. ..+|..+|.+++|+++| ..+++++.|+.+
T Consensus 213 H~kgvsai~~fp~-~~hLlLS~gm------D~~vklW~vy~~~~~lrt--f~gH~k~Vrd~~~s~~g-~~fLS~sfD~~l 282 (503)
T KOG0282|consen 213 HTKGVSAIQWFPK-KGHLLLSGGM------DGLVKLWNVYDDRRCLRT--FKGHRKPVRDASFNNCG-TSFLSASFDRFL 282 (503)
T ss_pred Cccccchhhhccc-eeeEEEecCC------CceEEEEEEecCcceehh--hhcchhhhhhhhccccC-Ceeeeeecceee
Confidence 7788999999996 5677777776 999999999875533332 23899999999999998 689999999999
Q ss_pred EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121 86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF 165 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 165 (317)
++||++++ ++...+.. ...++|+.|+|++.+.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-+. +..+
T Consensus 283 KlwDtETG---~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~-g~rF 357 (503)
T KOG0282|consen 283 KLWDTETG---QVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDE-GRRF 357 (503)
T ss_pred eeeccccc---eEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccC-CceE
Confidence 99999987 66666653 5678999999999779999999999999999999999999999999999999998 8999
Q ss_pred EEEeCCCeEEEEeCCCCCceeeec-cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCc--cEEEEecCC--Ccee
Q 021121 166 CSASGDCTLRIWDVREMGSTMIIP-AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV--PIAVLNGHG--YAVR 240 (317)
Q Consensus 166 ~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~--~~v~ 240 (317)
++.++|+.+++|+.+...++..+. .+.....++..+| .+++++.-+.|+.|.+|.+...-. ....+.+|. +.-.
T Consensus 358 issSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P-~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~ 436 (503)
T KOG0282|consen 358 ISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHP-NGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSC 436 (503)
T ss_pred eeeccCccEEEEEcCCCccchhhcchhhccCcceecCC-CCCeehhhccCceEEEEecccccccCHhhhhcceeccCcee
Confidence 999999999999999876655433 2334467899999 999999999999999998764321 233456664 3446
Q ss_pred EEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121 241 KVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309 (317)
Q Consensus 241 ~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~ 309 (317)
.+.|||||+ +|++|+.||.+.+||.++.+ ++..+..|.+++..+.|+|.....+|+++.||.|++|+
T Consensus 437 ~v~fSpDG~-~l~SGdsdG~v~~wdwkt~k-l~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 437 QVDFSPDGR-TLCSGDSDGKVNFWDWKTTK-LVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEEcCCCC-eEEeecCCccEEEeechhhh-hhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 789999999 79999999999999999987 77899999999999999999788999999999999996
No 37
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=2.3e-39 Score=252.82 Aligned_cols=260 Identities=25% Similarity=0.448 Sum_probs=230.3
Q ss_pred eeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCC-------CCceeeccCCcceEEEEEecCCCCEEEE
Q 021121 52 TELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTA-------NPIRSLHEHTREVHSADYNPTRRDSFIT 124 (317)
Q Consensus 52 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 124 (317)
+....+.|.+.|+.+.+-|+.+.++++++..+.|.|||....... .+-..+.+|...-.+++|++.....+++
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls 195 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLS 195 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEee
Confidence 344456799999999999999999999999999999998764222 2233678899888999999988879999
Q ss_pred EcCCCEEEEEEcCCCc-------eeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCC--CCCceeeeccCccce
Q 021121 125 SSWDDTVKLWTVDRPT-------SVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR--EMGSTMIIPAHEFEI 195 (317)
Q Consensus 125 ~~~dg~v~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~v 195 (317)
++.|+.|++||+.... ....+.+|...|..++|++.+..+|++++.|+.+.|||+| +.++.....+|..++
T Consensus 196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v 275 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV 275 (422)
T ss_pred ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence 9999999999997643 3456778999999999999989999999999999999999 556677788999999
Q ss_pred EEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc-----
Q 021121 196 LACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED----- 270 (317)
Q Consensus 196 ~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~----- 270 (317)
+|++|+|.++.+||+|+.|++|++||+|+...++..+.+|...|.++.|+|....+|++++.|+.+.|||+..-.
T Consensus 276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ 355 (422)
T KOG0264|consen 276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP 355 (422)
T ss_pred eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986532
Q ss_pred --------ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121 271 --------ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG 311 (317)
Q Consensus 271 --------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~ 311 (317)
+++....+|...|..+.|+|.....++|.+.|+.+.||++.
T Consensus 356 eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 356 EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred hhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 34567789999999999999978899999999999999987
No 38
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-39 Score=248.74 Aligned_cols=292 Identities=17% Similarity=0.221 Sum_probs=239.5
Q ss_pred ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121 5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGS 84 (317)
Q Consensus 5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 84 (317)
+|.+.|.-+.||+ +|+++++++. |.+..+|++.............+|..+|..+.|+||+ ++|++++.+..
T Consensus 222 ~htdEVWfl~FS~--nGkyLAsaSk------D~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~e~ 292 (519)
T KOG0293|consen 222 DHTDEVWFLQFSH--NGKYLASASK------DSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD-RYLLACGFDEV 292 (519)
T ss_pred hCCCcEEEEEEcC--CCeeEeeccC------CceEEEEEEecCcceeeeeeeecccCceEEEEECCCC-CeEEecCchHh
Confidence 4788999999999 7889988887 8899999998766422233444899999999999997 68888888889
Q ss_pred EEEEEeCCCCCCCCceeec-cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecc-ccceEEEEEecCCC
Q 021121 85 VKIYDTALPPTANPIRSLH-EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEH-AYCVYNATWNPRHS 162 (317)
Q Consensus 85 i~v~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~ 162 (317)
+.+||+.++ .....+. ++.-.+.+++|.|||. .+++|+.|+.+..||++.. .....++. ...|.+++..+| +
T Consensus 293 ~~lwDv~tg---d~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~D-g 366 (519)
T KOG0293|consen 293 LSLWDVDTG---DLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYD-G 366 (519)
T ss_pred eeeccCCcc---hhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCC-C
Confidence 999999987 4443333 3568899999999998 8999999999999999754 44444433 246999999999 7
Q ss_pred CeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCc--ee
Q 021121 163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYA--VR 240 (317)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~--v~ 240 (317)
+.+++.+.|..|++|+.++......+. ...+|+++..+. +++++++.-.+..+++||++... .+..+.+|... +-
T Consensus 367 k~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~-d~k~~LvnL~~qei~LWDl~e~~-lv~kY~Ghkq~~fiI 443 (519)
T KOG0293|consen 367 KYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISK-DGKLALVNLQDQEIHLWDLEENK-LVRKYFGHKQGHFII 443 (519)
T ss_pred cEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcC-CCcEEEEEcccCeeEEeecchhh-HHHHhhcccccceEE
Confidence 888888899999999988765544443 567899999998 99999999999999999999654 46677777643 33
Q ss_pred EEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCCC
Q 021121 241 KVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPR 315 (317)
Q Consensus 241 ~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~ 315 (317)
.-+|--....++++|++|+.|+||+..+++ ++..+.+|...|++++|+|.+..++|++|+||+||||......+
T Consensus 444 rSCFgg~~~~fiaSGSED~kvyIWhr~sgk-ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~~r 517 (519)
T KOG0293|consen 444 RSCFGGGNDKFIASGSEDSKVYIWHRISGK-LLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDNNR 517 (519)
T ss_pred EeccCCCCcceEEecCCCceEEEEEccCCc-eeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcccc
Confidence 445655444589999999999999998886 78899999999999999999888999999999999999876544
No 39
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.8e-40 Score=251.41 Aligned_cols=274 Identities=21% Similarity=0.406 Sum_probs=234.3
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
....|+|+++.. ++ ++++.. |.+|+|||.+... -.....+|.+.|.|+.|.. ..+++|+.|.+|
T Consensus 196 ~skgVYClQYDD---~k-iVSGlr------DnTikiWD~n~~~---c~~~L~GHtGSVLCLqyd~---rviisGSSDsTv 259 (499)
T KOG0281|consen 196 NSKGVYCLQYDD---EK-IVSGLR------DNTIKIWDKNSLE---CLKILTGHTGSVLCLQYDE---RVIVSGSSDSTV 259 (499)
T ss_pred cCCceEEEEecc---hh-hhcccc------cCceEEeccccHH---HHHhhhcCCCcEEeeeccc---eEEEecCCCceE
Confidence 345788887754 33 455554 8999999988654 1233448999999999984 599999999999
Q ss_pred EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc---eeEEeeccccceEEEEEecCCC
Q 021121 86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT---SVRTFKEHAYCVYNATWNPRHS 162 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~ 162 (317)
++||++++ +++.++..|...|..+.|+. .++++++.|.++.+||+.... +.+.+.+|...|+.+.|+ .
T Consensus 260 rvWDv~tg---e~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~ 330 (499)
T KOG0281|consen 260 RVWDVNTG---EPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---D 330 (499)
T ss_pred EEEeccCC---chhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---c
Confidence 99999987 89999999999999999984 399999999999999998764 344567899999999997 5
Q ss_pred CeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEE
Q 021121 163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKV 242 (317)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~ 242 (317)
+++++++.|.+|++|++.+.+.++++.+|...|-|+.+ .++++++|+.|.+|++||+..+. ++..+++|+.-|.++
T Consensus 331 kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G~-cLRvLeGHEeLvRci 406 (499)
T KOG0281|consen 331 KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGA-CLRVLEGHEELVRCI 406 (499)
T ss_pred ceEEEecCCceEEEEeccceeeehhhhcccccceehhc---cCeEEEecCCCceEEEEeccccH-HHHHHhchHHhhhhe
Confidence 69999999999999999999999999999999988876 67899999999999999999987 488999999999999
Q ss_pred EecCCCCeeEEeeecCCeEEEEecccccc--------eeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121 243 KFSPHRRNLLASCSYDMTVCLWDFMVEDA--------LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP 314 (317)
Q Consensus 243 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~ 314 (317)
.|. .+ -+++|+.||+|++||+..... ++..+..|.+.|..+.|. ...+++++.|.+|.+||+...+
T Consensus 407 RFd--~k-rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD---~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 407 RFD--NK-RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD---EFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred eec--Cc-eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec---ceEEEeccCCCeEEEEEcCCCC
Confidence 996 34 499999999999999987642 455677899999999997 5689999999999999997654
No 40
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-38 Score=251.06 Aligned_cols=286 Identities=21% Similarity=0.290 Sum_probs=244.8
Q ss_pred ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121 5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGS 84 (317)
Q Consensus 5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 84 (317)
+....|.+++|+|..+..++++++. ++.||+...... .+.+. .....+.++.|..|| .+|++|...|.
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S~--------rvqly~~~~~~~-~k~~s--rFk~~v~s~~fR~DG-~LlaaGD~sG~ 91 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSSV--------RVQLYSSVTRSV-RKTFS--RFKDVVYSVDFRSDG-RLLAAGDESGH 91 (487)
T ss_pred cccCcceeEecCCCCCCceEEeccc--------EEEEEecchhhh-hhhHH--hhccceeEEEeecCC-eEEEccCCcCc
Confidence 4567899999999989999999875 899999877652 22222 456789999999999 69999999999
Q ss_pred EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCe
Q 021121 85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDV 164 (317)
Q Consensus 85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 164 (317)
|+|||+++. ..+..+.+|..++..+.|+|.+...+++|+.|+.+++||+.+......+.+|++.|.|.+|+|.++.+
T Consensus 92 V~vfD~k~r---~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hi 168 (487)
T KOG0310|consen 92 VKVFDMKSR---VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHI 168 (487)
T ss_pred EEEeccccH---HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeE
Confidence 999996543 56778899999999999999998899999999999999999988766889999999999999998889
Q ss_pred EEEEeCCCeEEEEeCCCC-CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEE
Q 021121 165 FCSASGDCTLRIWDVREM-GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVK 243 (317)
Q Consensus 165 l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~ 243 (317)
+++|+.||.|++||++.. ..+..+. |..+|.++.+-| .+.++++++ ...+++||+-++.+.+.....|...|+|++
T Consensus 169 vvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lp-sgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~ 245 (487)
T KOG0310|consen 169 VVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALP-SGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLR 245 (487)
T ss_pred EEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcC-CCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEE
Confidence 999999999999999987 4455554 899999999999 889999987 467999999988776777667999999999
Q ss_pred ecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121 244 FSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 244 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
+..++. .|++|+-|+.+++||+.+-+ .+..+. ..++|.+++.+|+ ++.++.|..+|.+.+=+...
T Consensus 246 l~s~~~-rLlS~sLD~~VKVfd~t~~K-vv~s~~-~~~pvLsiavs~d-d~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 246 LASDST-RLLSGSLDRHVKVFDTTNYK-VVHSWK-YPGPVLSIAVSPD-DQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred eecCCc-eEeecccccceEEEEccceE-EEEeee-cccceeeEEecCC-CceEEEecccceeeeehhhc
Confidence 999987 59999999999999977665 555554 4688999999998 78999999999887654443
No 41
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-38 Score=261.02 Aligned_cols=293 Identities=28% Similarity=0.391 Sum_probs=243.7
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
|++.|.++.|+|+....++++++. |+.+++||+.........+ ..|.+.|++++|++++ ..+++++.|..+
T Consensus 146 ~gGvVssl~F~~~~~~~lL~sg~~------D~~v~vwnl~~~~tcl~~~--~~H~S~vtsL~~~~d~-~~~ls~~RDkvi 216 (775)
T KOG0319|consen 146 HGGVVSSLLFHPHWNRWLLASGAT------DGTVRVWNLNDKRTCLHTM--ILHKSAVTSLAFSEDS-LELLSVGRDKVI 216 (775)
T ss_pred CCceEEEEEeCCccchhheeecCC------CceEEEEEcccCchHHHHH--HhhhhheeeeeeccCC-ceEEEeccCcEE
Confidence 688999999999877777777776 9999999999765322222 2688899999999997 578888888888
Q ss_pred EEEEeCCC------------------------------------------------------------------------
Q 021121 86 KIYDTALP------------------------------------------------------------------------ 93 (317)
Q Consensus 86 ~v~~~~~~------------------------------------------------------------------------ 93 (317)
.+||+..-
T Consensus 217 ~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~ 296 (775)
T KOG0319|consen 217 IVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQL 296 (775)
T ss_pred EEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCce
Confidence 88887432
Q ss_pred ----------------------------------------------CCC----------CCceeeccCCcceEEEEEecC
Q 021121 94 ----------------------------------------------PTA----------NPIRSLHEHTREVHSADYNPT 117 (317)
Q Consensus 94 ----------------------------------------------~~~----------~~~~~~~~~~~~v~~~~~~~~ 117 (317)
.+. .....+.+|...|.++....+
T Consensus 297 l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~ 376 (775)
T KOG0319|consen 297 LLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSS 376 (775)
T ss_pred EEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeeccc
Confidence 000 011234578888888885555
Q ss_pred CCCEEEEEcCCCEEEEEEcCCCc----eeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCce-----e--
Q 021121 118 RRDSFITSSWDDTVKLWTVDRPT----SVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST-----M-- 186 (317)
Q Consensus 118 ~~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~-- 186 (317)
|- +|++|+.|.++++|.++++. ++....+|.+.|.+++++..+...|++++.|+++++|++...+.. .
T Consensus 377 g~-llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~ 455 (775)
T KOG0319|consen 377 GD-LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTC 455 (775)
T ss_pred Cc-EEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehh
Confidence 64 99999999999999885442 345567899999999999888889999999999999999863211 1
Q ss_pred --eeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEE
Q 021121 187 --IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLW 264 (317)
Q Consensus 187 --~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vw 264 (317)
....|+..|++++++| +..+++||+.|++.++|++++.+ ....+.+|...|.++.|+|..+ +++|+|.|++|+||
T Consensus 456 ~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~-l~~vLsGH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW 532 (775)
T KOG0319|consen 456 RYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLR-LLGVLSGHTRGVWCVSFSKNDQ-LLATCSGDKTVKIW 532 (775)
T ss_pred hHHHHhhcccccceEecC-CCceEEecccccceeeecccCce-EEEEeeCCccceEEEEeccccc-eeEeccCCceEEEE
Confidence 2346899999999999 99999999999999999999655 5888999999999999999988 89999999999999
Q ss_pred ecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121 265 DFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 265 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
.+.+.. ++.++.+|...|..+.|-.+ +..|+|++.||.+++|++.+.
T Consensus 533 ~is~fS-ClkT~eGH~~aVlra~F~~~-~~qliS~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 533 SISTFS-CLKTFEGHTSAVLRASFIRN-GKQLISAGADGLIKLWNIKTN 579 (775)
T ss_pred Eeccce-eeeeecCccceeEeeeeeeC-CcEEEeccCCCcEEEEeccch
Confidence 999987 78999999999999999998 889999999999999999874
No 42
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-38 Score=241.71 Aligned_cols=246 Identities=25% Similarity=0.352 Sum_probs=226.8
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD 137 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 137 (317)
++..+|+.+-|+|+- .++++++.|++|++||..++ +....+++|...+.++.|+..|+ ++++++.|-.+++||.+
T Consensus 106 g~r~~vt~v~~hp~~-~~v~~as~d~tikv~D~~tg---~~e~~LrGHt~sv~di~~~a~Gk-~l~tcSsDl~~~LWd~~ 180 (406)
T KOG0295|consen 106 GHRSSVTRVIFHPSE-ALVVSASEDATIKVFDTETG---ELERSLRGHTDSVFDISFDASGK-YLATCSSDLSAKLWDFD 180 (406)
T ss_pred ccccceeeeeeccCc-eEEEEecCCceEEEEEccch---hhhhhhhccccceeEEEEecCcc-EEEecCCccchhheeHH
Confidence 678899999999986 68999999999999999887 67888999999999999999998 99999999999999998
Q ss_pred C-CceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCc
Q 021121 138 R-PTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKS 216 (317)
Q Consensus 138 ~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~ 216 (317)
+ .++++.+.+|+..|.++.|-|. ++++++++.|.+|+.|++.++-++.++.+|...+..++.+. ++.++++++.|.+
T Consensus 181 ~~~~c~ks~~gh~h~vS~V~f~P~-gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqt 258 (406)
T KOG0295|consen 181 TFFRCIKSLIGHEHGVSSVFFLPL-GDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQT 258 (406)
T ss_pred HHHHHHHHhcCcccceeeEEEEec-CCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC-CeeEEEecCCCce
Confidence 7 4677888899999999999999 79999999999999999999999999999999999999998 9999999999999
Q ss_pred EEEEEccCCCccEEEEecCCCceeEEEecCC--------------CCeeEEeeecCCeEEEEecccccceeeeeecccce
Q 021121 217 IKIWDVRNYRVPIAVLNGHGYAVRKVKFSPH--------------RRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEF 282 (317)
Q Consensus 217 i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~--------------~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 282 (317)
+++|-+.+.+ +...+..|+.+|-+++|.|. +..++.+++.|++|++||+.++. ++.++.+|...
T Consensus 259 l~vW~~~t~~-~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~-cL~tL~ghdnw 336 (406)
T KOG0295|consen 259 LRVWVVATKQ-CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM-CLFTLVGHDNW 336 (406)
T ss_pred EEEEEeccch-hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe-EEEEEecccce
Confidence 9999999865 47788899999999999873 22389999999999999999997 67899999999
Q ss_pred eEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121 283 AVGVDMSVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 283 v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
|.+++|+|. |++|+++.+|+++++||+...
T Consensus 337 Vr~~af~p~-Gkyi~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 337 VRGVAFSPG-GKYILSCADDKTLRVWDLKNL 366 (406)
T ss_pred eeeeEEcCC-CeEEEEEecCCcEEEEEeccc
Confidence 999999998 899999999999999999764
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.8e-38 Score=262.78 Aligned_cols=291 Identities=19% Similarity=0.306 Sum_probs=243.6
Q ss_pred cee-cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEc
Q 021121 3 VFK-TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVA 81 (317)
Q Consensus 3 ~~~-~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 81 (317)
.|+ ....|..++|+|. ..-++++-- +|.|++||..-.. .+.. ..+|.++|+.++|+|+.+ ++++|+.
T Consensus 4 kfEskSsRvKglsFHP~-rPwILtslH-------sG~IQlWDYRM~t-li~r--FdeHdGpVRgv~FH~~qp-lFVSGGD 71 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPK-RPWILTSLH-------SGVIQLWDYRMGT-LIDR--FDEHDGPVRGVDFHPTQP-LFVSGGD 71 (1202)
T ss_pred hhhcccccccceecCCC-CCEEEEeec-------Cceeeeehhhhhh-HHhh--hhccCCccceeeecCCCC-eEEecCC
Confidence 355 3468899999994 344444443 8999999987543 1111 227999999999999985 9999999
Q ss_pred CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCC
Q 021121 82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRH 161 (317)
Q Consensus 82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (317)
|-.|+||+.+.. +++.++.+|-..|..+.|++.-+ .++++|.|.+|+||+..+++++..+.+|...|.|..|+|.
T Consensus 72 DykIkVWnYk~r---rclftL~GHlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhpt- 146 (1202)
T KOG0292|consen 72 DYKIKVWNYKTR---RCLFTLLGHLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPT- 146 (1202)
T ss_pred ccEEEEEecccc---eehhhhccccceeEEeeccCCCc-eEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCc-
Confidence 999999999876 88899999999999999999988 9999999999999999999999999999999999999998
Q ss_pred CCeEEEEeCCCeEEEEeCCCCC-----------------------------ceeeeccCccceEEEEecCCCCcEEEEEe
Q 021121 162 SDVFCSASGDCTLRIWDVREMG-----------------------------STMIIPAHEFEILACDWNKYDDCLIASAS 212 (317)
Q Consensus 162 ~~~l~~~~~dg~i~i~d~~~~~-----------------------------~~~~~~~~~~~v~~i~~~~~~~~~l~~~~ 212 (317)
..++++++-|.+|++||+...+ ....+.+|...|+-++|+| .-.++++|+
T Consensus 147 EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~ 225 (1202)
T KOG0292|consen 147 EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGA 225 (1202)
T ss_pred cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC-CcceEEecC
Confidence 8899999999999999985211 1123568999999999999 889999999
Q ss_pred cCCcEEEEEccCCC-ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEec
Q 021121 213 VDKSIKIWDVRNYR-VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVL 291 (317)
Q Consensus 213 ~d~~i~v~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 291 (317)
.|..|++|.+...+ -.+.+..+|...|.++.|+|... ++++.++|++|+|||+.... .++.++...+.-..++.+|.
T Consensus 226 DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kRt-~v~tfrrendRFW~laahP~ 303 (1202)
T KOG0292|consen 226 DDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKRT-SVQTFRRENDRFWILAAHPE 303 (1202)
T ss_pred CcceeeEEEeccccceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEeccccc-ceeeeeccCCeEEEEEecCC
Confidence 99999999987543 12456789999999999999887 89999999999999998766 56777777788899999997
Q ss_pred cCCeEEEeecCCcEEEEecCCCCC
Q 021121 292 VEGLLASTGWDELVYVWQQGMDPR 315 (317)
Q Consensus 292 ~~~~l~s~~~dg~i~~w~~~~~~~ 315 (317)
.+++++|- |+-+.+|.++.++.
T Consensus 304 -lNLfAAgH-DsGm~VFkleRErp 325 (1202)
T KOG0292|consen 304 -LNLFAAGH-DSGMIVFKLERERP 325 (1202)
T ss_pred -cceeeeec-CCceEEEEEcccCc
Confidence 66666664 55577999986543
No 44
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.1e-39 Score=245.55 Aligned_cols=232 Identities=24% Similarity=0.465 Sum_probs=207.4
Q ss_pred CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC
Q 021121 59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR 138 (317)
Q Consensus 59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 138 (317)
...+|+|+.+.. ..+++|..|.+|+|||...- .+...+.+|.+.|.|+.|.. + .+++|+.|.+|++||+++
T Consensus 196 ~skgVYClQYDD---~kiVSGlrDnTikiWD~n~~---~c~~~L~GHtGSVLCLqyd~--r-viisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQYDD---EKIVSGLRDNTIKIWDKNSL---ECLKILTGHTGSVLCLQYDE--R-VIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEecc---hhhhcccccCceEEeccccH---HHHHhhhcCCCcEEeeeccc--e-EEEecCCCceEEEEeccC
Confidence 456899999873 37999999999999998755 78888999999999999973 3 899999999999999999
Q ss_pred CceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc---eeeeccCccceEEEEecCCCCcEEEEEecCC
Q 021121 139 PTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS---TMIIPAHEFEILACDWNKYDDCLIASASVDK 215 (317)
Q Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~ 215 (317)
++++.++-.|...|..+.|+ ..++++++.|.++.+||+..... .+.+.+|...|+.+.|+. +++++++.|.
T Consensus 267 ge~l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDR 340 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDR 340 (499)
T ss_pred CchhhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCc
Confidence 99999999999999999998 67899999999999999987643 345678999999999864 5999999999
Q ss_pred cEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCe
Q 021121 216 SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGL 295 (317)
Q Consensus 216 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 295 (317)
+|++|++.+.+ .+.++.+|...|.|+.+. ++ ++++|+.|.+|++||+..+. +++.+++|+.-|.++.|. .+.
T Consensus 341 TikvW~~st~e-fvRtl~gHkRGIAClQYr--~r-lvVSGSSDntIRlwdi~~G~-cLRvLeGHEeLvRciRFd---~kr 412 (499)
T KOG0281|consen 341 TIKVWSTSTCE-FVRTLNGHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIECGA-CLRVLEGHEELVRCIRFD---NKR 412 (499)
T ss_pred eEEEEecccee-eehhhhcccccceehhcc--Ce-EEEecCCCceEEEEeccccH-HHHHHhchHHhhhheeec---Cce
Confidence 99999999976 489999999999998874 55 89999999999999999987 678999999999999998 678
Q ss_pred EEEeecCCcEEEEecCCC
Q 021121 296 LASTGWDELVYVWQQGMD 313 (317)
Q Consensus 296 l~s~~~dg~i~~w~~~~~ 313 (317)
+++|+.||+|++||+...
T Consensus 413 IVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 413 IVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred eeeccccceEEEEecccc
Confidence 999999999999999763
No 45
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-37 Score=252.59 Aligned_cols=246 Identities=22% Similarity=0.372 Sum_probs=225.9
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD 137 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 137 (317)
.+...|.++.|+|..+ .++++-.+|.|.||+.++. ..++.++-...+|.+..|-+..+ .+++|+.|..|++|+.+
T Consensus 11 ~rSdRVKsVd~HPteP-w~la~LynG~V~IWnyetq---tmVksfeV~~~PvRa~kfiaRkn-Wiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEP-WILAALYNGDVQIWNYETQ---TMVKSFEVSEVPVRAAKFIARKN-WIVTGSDDMQIRVFNYN 85 (794)
T ss_pred ccCCceeeeecCCCCc-eEEEeeecCeeEEEecccc---eeeeeeeecccchhhheeeeccc-eEEEecCCceEEEEecc
Confidence 4778899999999975 8888899999999999876 77888888889999999988766 99999999999999999
Q ss_pred CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC-CceeeeccCccceEEEEecCCCCcEEEEEecCCc
Q 021121 138 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM-GSTMIIPAHEFEILACDWNKYDDCLIASASVDKS 216 (317)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~ 216 (317)
+++.++.+.+|.+-|.+++.+|. ..+++++++|-.|++||.+.. .+.+.+.+|...|.+++|+|.+.+.+++++-|++
T Consensus 86 t~ekV~~FeAH~DyIR~iavHPt-~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT 164 (794)
T KOG0276|consen 86 TGEKVKTFEAHSDYIRSIAVHPT-LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT 164 (794)
T ss_pred cceeeEEeeccccceeeeeecCC-CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence 99999999999999999999999 788889999999999999876 6778899999999999999999999999999999
Q ss_pred EEEEEccCCCccEEEEecCCCceeEEEecCCC-CeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCe
Q 021121 217 IKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHR-RNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGL 295 (317)
Q Consensus 217 i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 295 (317)
|+||.+.+.. +..++.+|...|+++.|-+.| +-+|++|+.|.+|+|||.++.. +++++.+|...|..+.|+|. -.+
T Consensus 165 VKVWslgs~~-~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~-CV~TLeGHt~Nvs~v~fhp~-lpi 241 (794)
T KOG0276|consen 165 VKVWSLGSPH-PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS-CVQTLEGHTNNVSFVFFHPE-LPI 241 (794)
T ss_pred EEEEEcCCCC-CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH-HHHHhhcccccceEEEecCC-CcE
Confidence 9999999865 688999999999999998865 2279999999999999999876 77999999999999999997 679
Q ss_pred EEEeecCCcEEEEecCC
Q 021121 296 LASTGWDELVYVWQQGM 312 (317)
Q Consensus 296 l~s~~~dg~i~~w~~~~ 312 (317)
++||+.||++|||+-.+
T Consensus 242 iisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 242 IISGSEDGTVRIWNSKT 258 (794)
T ss_pred EEEecCCccEEEecCcc
Confidence 99999999999999765
No 46
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.9e-37 Score=258.86 Aligned_cols=247 Identities=30% Similarity=0.488 Sum_probs=215.7
Q ss_pred CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEc-C
Q 021121 59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTV-D 137 (317)
Q Consensus 59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~-~ 137 (317)
+...|.++.|+++| ..+++++.++.+++|+...... .....+.+|...|.+++|+|++. ++++++.|++|++||+ .
T Consensus 158 ~~~sv~~~~fs~~g-~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDG-RALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKD 234 (456)
T ss_pred ccCceEEEEEcCCC-CeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc-EEEEecCCceEEEeeccC
Confidence 36789999999999 4799999999999999965421 25666688999999999999998 9999999999999999 5
Q ss_pred CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcE
Q 021121 138 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSI 217 (317)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i 217 (317)
.+..++.+++|...|++++|+|+ ++++++|+.|++|++||++++++...+.+|..+|.+++|++ ++++|++++.|+.|
T Consensus 235 ~~~~~~~l~gH~~~v~~~~f~p~-g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i 312 (456)
T KOG0266|consen 235 DGRNLKTLKGHSTYVTSVAFSPD-GNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTI 312 (456)
T ss_pred CCeEEEEecCCCCceEEEEecCC-CCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCCccE
Confidence 55889999999999999999999 59999999999999999999999999999999999999999 99999999999999
Q ss_pred EEEEccCCCc-cEEEEecCCC--ceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccce---eEeEEEEec
Q 021121 218 KIWDVRNYRV-PIAVLNGHGY--AVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEF---AVGVDMSVL 291 (317)
Q Consensus 218 ~v~d~~~~~~-~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~---v~~~~~~~~ 291 (317)
++||+.++.. +...+..+.. ++++++|+|++. +++++..|+.+++||+.... ....+.+|... +.+...++.
T Consensus 313 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~-~ll~~~~d~~~~~w~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 390 (456)
T KOG0266|consen 313 RVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGK-YLLSASLDRTLKLWDLRSGK-SVGTYTGHSNLVRCIFSPTLSTG 390 (456)
T ss_pred EEEECCCCceeeeecccCCCCCCceeEEEECCCCc-EEEEecCCCeEEEEEccCCc-ceeeecccCCcceeEecccccCC
Confidence 9999998763 2455555554 499999999999 69999999999999999887 55667777664 344444555
Q ss_pred cCCeEEEeecCCcEEEEecCCC
Q 021121 292 VEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 292 ~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
+.++++|+.|+.|++|++...
T Consensus 391 -~~~i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 391 -GKLIYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred -CCeEEEEeCCceEEEEeCCcc
Confidence 789999999999999999864
No 47
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-37 Score=249.60 Aligned_cols=286 Identities=24% Similarity=0.366 Sum_probs=245.1
Q ss_pred CceecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEc
Q 021121 2 PVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVA 81 (317)
Q Consensus 2 ~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 81 (317)
|.+...+...=++|+. .+.++++.+. .|++|+...+. ...+..++ .+.|+++.|+++| .+|++|..
T Consensus 172 P~l~dDfY~nlldWss--~n~laValg~--------~vylW~~~s~~--v~~l~~~~-~~~vtSv~ws~~G-~~LavG~~ 237 (484)
T KOG0305|consen 172 PGLQDDFYLNLLDWSS--ANVLAVALGQ--------SVYLWSASSGS--VTELCSFG-EELVTSVKWSPDG-SHLAVGTS 237 (484)
T ss_pred CcccccHhhhHhhccc--CCeEEEEecc--------eEEEEecCCCc--eEEeEecC-CCceEEEEECCCC-CEEEEeec
Confidence 3344444445588998 7888888765 89999988775 44444444 7899999999999 69999999
Q ss_pred CCeEEEEEeCCCCCCCCceeecc-CCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEE-eeccccceEEEEEec
Q 021121 82 DGSVKIYDTALPPTANPIRSLHE-HTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRT-FKEHAYCVYNATWNP 159 (317)
Q Consensus 82 dg~i~v~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~ 159 (317)
+|.|.|||.... +....+.. |...|-+++|+ +. .+.+|+.|+.|..+|++..+.... +.+|...|..+.|++
T Consensus 238 ~g~v~iwD~~~~---k~~~~~~~~h~~rvg~laW~--~~-~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 238 DGTVQIWDVKEQ---KKTRTLRGSHASRVGSLAWN--SS-VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP 311 (484)
T ss_pred CCeEEEEehhhc---cccccccCCcCceeEEEecc--Cc-eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC
Confidence 999999998766 66667777 99999999999 23 899999999999999998866555 888999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEe--cCCcEEEEEccCCCccEEEEecCCC
Q 021121 160 RHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASAS--VDKSIKIWDVRNYRVPIAVLNGHGY 237 (317)
Q Consensus 160 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~ 237 (317)
+ +.++++|+.|+.+.|||....+++..+..|...|.+++|+|....+||+|+ .|+.|++||..++.. +.... -..
T Consensus 312 d-~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~-i~~vd-tgs 388 (484)
T KOG0305|consen 312 D-GNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR-IDSVD-TGS 388 (484)
T ss_pred C-CCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE-ecccc-cCC
Confidence 9 999999999999999999888999999999999999999999999999975 689999999998764 44443 456
Q ss_pred ceeEEEecCCCCeeEEeee-cCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121 238 AVRKVKFSPHRRNLLASCS-YDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 238 ~v~~~~~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
.|.+|.|++..+.++.+-+ .++.|.||++.+.+ .+..+.+|...|..++++|+ +..+++|+.|.++++|++-.
T Consensus 389 QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~-~~~~l~gH~~RVl~la~SPd-g~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 389 QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK-LVAELLGHTSRVLYLALSPD-GETIVTGAADETLRFWNLFD 462 (484)
T ss_pred ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc-eeeeecCCcceeEEEEECCC-CCEEEEecccCcEEeccccC
Confidence 8999999999987665544 56789999999865 67889999999999999999 89999999999999999866
No 48
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.6e-37 Score=220.52 Aligned_cols=241 Identities=22% Similarity=0.322 Sum_probs=212.5
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD 137 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 137 (317)
.+.++|+.+.|+-+| ++.++++.|.+|++|+...+ ..++++.+|..+|..++.+.|+. .+++|+.|..+.+||++
T Consensus 15 ~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~rg---~liktYsghG~EVlD~~~s~Dns-kf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLRG---ALIKTYSGHGHEVLDAALSSDNS-KFASCGGDKAVQVWDVN 89 (307)
T ss_pred ccccceEEEEEccCC-CEEEEcCCCceEEeeccccc---ceeeeecCCCceeeecccccccc-ccccCCCCceEEEEEcc
Confidence 578899999999999 69999999999999998776 89999999999999999999887 89999999999999999
Q ss_pred CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC--CceeeeccCccceEEEEecCCCCcEEEEEecCC
Q 021121 138 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM--GSTMIIPAHEFEILACDWNKYDDCLIASASVDK 215 (317)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~ 215 (317)
+|+..+.+++|.+.|+.++|+.+ ...+++|+.|.++++||-++. ++++.+......|.++... +..|++|+.||
T Consensus 90 TGkv~Rr~rgH~aqVNtV~fNee-sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DG 165 (307)
T KOG0316|consen 90 TGKVDRRFRGHLAQVNTVRFNEE-SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDG 165 (307)
T ss_pred cCeeeeecccccceeeEEEecCc-ceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCC
Confidence 99999999999999999999988 899999999999999999865 6777887778889999875 46799999999
Q ss_pred cEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeE--EEEeccC
Q 021121 216 SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGV--DMSVLVE 293 (317)
Q Consensus 216 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ 293 (317)
+++.||+|.++. .... ...+|++++|+++++ ...+++.|+++++.|-.+++ ++..+.+|...-+.+ +++.. .
T Consensus 166 tvRtydiR~G~l-~sDy--~g~pit~vs~s~d~n-c~La~~l~stlrLlDk~tGk-lL~sYkGhkn~eykldc~l~qs-d 239 (307)
T KOG0316|consen 166 TVRTYDIRKGTL-SSDY--FGHPITSVSFSKDGN-CSLASSLDSTLRLLDKETGK-LLKSYKGHKNMEYKLDCCLNQS-D 239 (307)
T ss_pred cEEEEEeeccee-ehhh--cCCcceeEEecCCCC-EEEEeeccceeeecccchhH-HHHHhcccccceeeeeeeeccc-c
Confidence 999999999764 3333 345899999999998 68888999999999988887 778899997755544 45544 6
Q ss_pred CeEEEeecCCcEEEEecCCC
Q 021121 294 GLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 294 ~~l~s~~~dg~i~~w~~~~~ 313 (317)
..+++|+.||.|++||+...
T Consensus 240 thV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 240 THVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred eeEEeccCCceEEEEEeccc
Confidence 69999999999999999764
No 49
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-37 Score=261.26 Aligned_cols=246 Identities=23% Similarity=0.395 Sum_probs=224.0
Q ss_pred CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC
Q 021121 59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR 138 (317)
Q Consensus 59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 138 (317)
....|..++|+|..+ .++++-..|.|++||.+-+ ..+..+..|.++|..++|+|+++ ++++|+.|-.|++|+..+
T Consensus 8 kSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~---tli~rFdeHdGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMG---TLIDRFDEHDGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred ccccccceecCCCCC-EEEEeecCceeeeehhhhh---hHHhhhhccCCccceeeecCCCC-eEEecCCccEEEEEeccc
Confidence 456789999999974 9999999999999999876 78888999999999999999998 999999999999999999
Q ss_pred CceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEE
Q 021121 139 PTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIK 218 (317)
Q Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~ 218 (317)
.+++.++.+|-+.|..+.|++. -..++++++|.+|+||+.++.+++..+.+|...|.|..|+| ...++++++-|.+||
T Consensus 83 rrclftL~GHlDYVRt~~FHhe-yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVR 160 (1202)
T KOG0292|consen 83 RRCLFTLLGHLDYVRTVFFHHE-YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVR 160 (1202)
T ss_pred ceehhhhccccceeEEeeccCC-CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEecccceEE
Confidence 9999999999999999999998 78899999999999999999999999999999999999999 999999999999999
Q ss_pred EEEccCCCc----------------------------cEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121 219 IWDVRNYRV----------------------------PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED 270 (317)
Q Consensus 219 v~d~~~~~~----------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~ 270 (317)
|||+...+. ....+.+|...|+-++|+|.-+ ++++|+.|..|++|.+...+
T Consensus 161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetK 239 (1202)
T KOG0292|consen 161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETK 239 (1202)
T ss_pred EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEecccc
Confidence 999863221 1234678999999999999998 89999999999999987655
Q ss_pred -ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121 271 -ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 271 -~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
-.+.+..+|...|.++-|+|. .++++|.|.|++|++||+...
T Consensus 240 aWEvDtcrgH~nnVssvlfhp~-q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 240 AWEVDTCRGHYNNVSSVLFHPH-QDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred ceeehhhhcccCCcceEEecCc-cceeEecCCCccEEEEecccc
Confidence 234667899999999999998 889999999999999999764
No 50
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-36 Score=222.00 Aligned_cols=249 Identities=20% Similarity=0.282 Sum_probs=220.3
Q ss_pred eeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEE
Q 021121 54 LVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKL 133 (317)
Q Consensus 54 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i 133 (317)
+...+|..+++.+.|+.+|+ +|++++.|....+|--.++ +.+.++.+|.+.|+|+..+.+.+ .+++|+.|.++++
T Consensus 4 i~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nG---erlGty~GHtGavW~~Did~~s~-~liTGSAD~t~kL 78 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNG---ERLGTYDGHTGAVWCCDIDWDSK-HLITGSADQTAKL 78 (327)
T ss_pred cccccCccccceEEecCCCc-EEEEecCCCCceEEEecCC---ceeeeecCCCceEEEEEecCCcc-eeeeccccceeEE
Confidence 44558999999999999995 9999999999999998766 88999999999999999998887 9999999999999
Q ss_pred EEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeC-----CCeEEEEeCC-------CCCceeeeccCccceEEEEec
Q 021121 134 WTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASG-----DCTLRIWDVR-------EMGSTMIIPAHEFEILACDWN 201 (317)
Q Consensus 134 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~-------~~~~~~~~~~~~~~v~~i~~~ 201 (317)
||+++|+++..++ ...+|..+.|++. +++++.+.+ .+.|.++|++ ..++...+..+++.++.+.|.
T Consensus 79 WDv~tGk~la~~k-~~~~Vk~~~F~~~-gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 79 WDVETGKQLATWK-TNSPVKRVDFSFG-GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EEcCCCcEEEEee-cCCeeEEEeeccC-CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 9999999999987 5678999999998 676666543 4779999998 446677888888999999999
Q ss_pred CCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc-----------
Q 021121 202 KYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED----------- 270 (317)
Q Consensus 202 ~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~----------- 270 (317)
| .+..|++|.+||.|..||++++.+.+.....|...|+.++++|+.. ++++++.|.+-++||+.+.+
T Consensus 157 ~-l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~D~~tl~v~Kty~te~Pv 234 (327)
T KOG0643|consen 157 P-LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLVDVRTLEVLKTYTTERPV 234 (327)
T ss_pred c-cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc-eEEecccCccceeeeccceeeEEEeeecccc
Confidence 9 9999999999999999999998877788888999999999999998 79999999999999987532
Q ss_pred -------------------------------------------ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEE
Q 021121 271 -------------------------------------------ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYV 307 (317)
Q Consensus 271 -------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~ 307 (317)
+.+.+..+|-++|++++|+|+ ++..++|+.||.||+
T Consensus 235 N~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPd-GksYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 235 NTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPD-GKSYSSGGEDGYVRL 313 (327)
T ss_pred cceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCC-CcccccCCCCceEEE
Confidence 112456689999999999999 899999999999999
Q ss_pred EecCC
Q 021121 308 WQQGM 312 (317)
Q Consensus 308 w~~~~ 312 (317)
..++.
T Consensus 314 h~Fd~ 318 (327)
T KOG0643|consen 314 HHFDS 318 (327)
T ss_pred EEecc
Confidence 87654
No 51
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-35 Score=217.88 Aligned_cols=244 Identities=24% Similarity=0.428 Sum_probs=210.4
Q ss_pred ecCCCCeeEEEecCC-CCCeEEEEEcCCeEEEEEeCCCCCCCCceee-ccCCcceEEEEEecCCCCEEEEEcCCCEEEEE
Q 021121 57 FDTADGVYDLAWSES-HDSLLIAAVADGSVKIYDTALPPTANPIRSL-HEHTREVHSADYNPTRRDSFITSSWDDTVKLW 134 (317)
Q Consensus 57 ~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw 134 (317)
.+|.+.+..++|+|- | .+||+++.|..|++|+...+....+...+ .+|+..|.+++|+|.|+ +|++++.|.++.||
T Consensus 11 ~gh~~r~W~~awhp~~g-~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aSFD~t~~Iw 88 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKG-VILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASASFDATVVIW 88 (312)
T ss_pred cCCCCcEEEEEeccCCc-eEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-EEEEeeccceEEEe
Confidence 368889999999997 5 59999999999999998854334444333 37999999999999999 99999999999999
Q ss_pred EcCCC--ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC---CceeeeccCccceEEEEecCCCCcEEE
Q 021121 135 TVDRP--TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM---GSTMIIPAHEFEILACDWNKYDDCLIA 209 (317)
Q Consensus 135 d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~l~ 209 (317)
.-..+ +++..+.+|...|.+++|+++ +++|++++.|..|-+|..... ++...++.|...|..+.|+| ...+|+
T Consensus 89 ~k~~~efecv~~lEGHEnEVK~Vaws~s-G~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~ 166 (312)
T KOG0645|consen 89 KKEDGEFECVATLEGHENEVKCVAWSAS-GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLF 166 (312)
T ss_pred ecCCCceeEEeeeeccccceeEEEEcCC-CCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeE
Confidence 86644 678899999999999999999 999999999999999999855 45667889999999999999 999999
Q ss_pred EEecCCcEEEEEccCCC--ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEE
Q 021121 210 SASVDKSIKIWDVRNYR--VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVD 287 (317)
Q Consensus 210 ~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 287 (317)
+++.|.+|++|+-.... .+..++.+|...|.+++|+|.|. -|++++.|++++||...+. .-..|...++.+.
T Consensus 167 S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~-rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~ 240 (312)
T KOG0645|consen 167 SCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS-RLVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVP 240 (312)
T ss_pred EeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc-eEEEecCCcceEeeeeccC-----cchhcccceEeee
Confidence 99999999999876322 35788999999999999999998 4999999999999986632 2234678899999
Q ss_pred EEeccCCeEEEeecCCcEEEEecCCC
Q 021121 288 MSVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 288 ~~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
|. ...|++++.|+.|++|.-...
T Consensus 241 W~---~~~IaS~ggD~~i~lf~~s~~ 263 (312)
T KOG0645|consen 241 WD---NGVIASGGGDDAIRLFKESDS 263 (312)
T ss_pred ec---ccceEeccCCCEEEEEEecCC
Confidence 98 358999999999999988754
No 52
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=8.7e-36 Score=269.33 Aligned_cols=271 Identities=21% Similarity=0.357 Sum_probs=221.6
Q ss_pred CceEEEEecCCCCCcc--eeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCC-----CCCceeeccCCcc
Q 021121 36 NGRVHVLDLSPAAPAL--TELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPT-----ANPIRSLHEHTRE 108 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~-----~~~~~~~~~~~~~ 108 (317)
+|-+++|+........ ..-....|...|.+++|+|++ .++++|+.|+.|++|++..... ..+...+. +...
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg-~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~ 534 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDG-EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSK 534 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCc
Confidence 4567777766433110 001122478899999999998 5999999999999999753210 01222233 3568
Q ss_pred eEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee
Q 021121 109 VHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII 188 (317)
Q Consensus 109 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 188 (317)
+.+++|++....+|++++.||.|++||+.+++.+..+..|...|++++|+|.++.+|++|+.||.|++||++++..+..+
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI 614 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 99999998655599999999999999999999999999999999999999855889999999999999999998888777
Q ss_pred ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121 189 PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV 268 (317)
Q Consensus 189 ~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~ 268 (317)
..+ ..+.++.|++.++.++++|+.|+.|++||+++.+.++..+.+|...|.++.|. ++. +|++++.|++|++||++.
T Consensus 615 ~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~-~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 615 KTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS-TLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred ecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC-EEEEEECCCEEEEEeCCC
Confidence 644 57899999765899999999999999999998765677788999999999997 555 699999999999999975
Q ss_pred c-----cceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121 269 E-----DALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 269 ~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
. ...+..+.+|...+..++|+|+ +.+|++|+.|+.|++|+...
T Consensus 692 ~~~~~~~~~l~~~~gh~~~i~~v~~s~~-~~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 692 SISGINETPLHSFMGHTNVKNFVGLSVS-DGYIATGSETNEVFVYHKAF 739 (793)
T ss_pred CccccCCcceEEEcCCCCCeeEEEEcCC-CCEEEEEeCCCEEEEEECCC
Confidence 3 1356778899999999999998 78999999999999999754
No 53
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.8e-36 Score=247.10 Aligned_cols=284 Identities=19% Similarity=0.310 Sum_probs=246.1
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
|...|+++++|. +..++++++ .+.+.+|+..+.+ .+..+... -+.+..|.|-+ +++++|...|.+
T Consensus 372 HR~dVRsl~vS~--d~~~~~Sga-------~~SikiWn~~t~k----ciRTi~~~-y~l~~~Fvpgd-~~Iv~G~k~Gel 436 (888)
T KOG0306|consen 372 HRSDVRSLCVSS--DSILLASGA-------GESIKIWNRDTLK----CIRTITCG-YILASKFVPGD-RYIVLGTKNGEL 436 (888)
T ss_pred chhheeEEEeec--CceeeeecC-------CCcEEEEEccCcc----eeEEeccc-cEEEEEecCCC-ceEEEeccCCce
Confidence 678899999999 666666665 6799999998754 34444333 78899999976 799999999999
Q ss_pred EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC-----CceeE--Eee-----ccccceE
Q 021121 86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR-----PTSVR--TFK-----EHAYCVY 153 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~-----~~~~~--~~~-----~~~~~v~ 153 (317)
.+||+... ..+...+.|.+.|++++.+||+. .+++|+.|.+|++||..- +...+ .+. .-+..|.
T Consensus 437 ~vfdlaS~---~l~Eti~AHdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL 512 (888)
T KOG0306|consen 437 QVFDLASA---SLVETIRAHDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVL 512 (888)
T ss_pred EEEEeehh---hhhhhhhccccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEE
Confidence 99999876 66777789999999999999998 899999999999999742 21111 111 2356799
Q ss_pred EEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe
Q 021121 154 NATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN 233 (317)
Q Consensus 154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 233 (317)
|+.++|+ +.+++++--|.++++|-+.+.+....+.+|.-||.|+..+| ++++++||+.|..|++|-+.-+. +...+.
T Consensus 513 ~v~~Spd-gk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGD-CHKS~f 589 (888)
T KOG0306|consen 513 CVSVSPD-GKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGD-CHKSFF 589 (888)
T ss_pred EEEEcCC-CcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccch-hhhhhh
Confidence 9999999 99999999999999999999999999999999999999999 99999999999999999988766 478888
Q ss_pred cCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121 234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 234 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
+|...|.++.|.|... ++.+++.|+.|+-||-..-+ .++.+.+|...|++++.+|+ |.+++++|.|.+|++|....+
T Consensus 590 AHdDSvm~V~F~P~~~-~FFt~gKD~kvKqWDg~kFe-~iq~L~~H~~ev~cLav~~~-G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 590 AHDDSVMSVQFLPKTH-LFFTCGKDGKVKQWDGEKFE-EIQKLDGHHSEVWCLAVSPN-GSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred cccCceeEEEEcccce-eEEEecCcceEEeechhhhh-hheeeccchheeeeeEEcCC-CCeEEeccCCceeEeeeccCc
Confidence 9999999999999776 79999999999999987765 67899999999999999999 889999999999999998764
Q ss_pred C
Q 021121 314 P 314 (317)
Q Consensus 314 ~ 314 (317)
+
T Consensus 667 ~ 667 (888)
T KOG0306|consen 667 I 667 (888)
T ss_pred c
Confidence 3
No 54
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.3e-37 Score=232.83 Aligned_cols=287 Identities=17% Similarity=0.281 Sum_probs=248.7
Q ss_pred eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcc----ee-eeeecCCCCeeEEEecCCCCCeEEE
Q 021121 4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPAL----TE-LVAFDTADGVYDLAWSESHDSLLIA 78 (317)
Q Consensus 4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~----~~-~~~~~~~~~v~~~~~~~~~~~~l~~ 78 (317)
|.....+.|..||| ++.++++++. ||-|.+|++.++.... +. -...-+..+|.|+.|+.|. .++|+
T Consensus 210 Fg~KSh~EcA~FSP--DgqyLvsgSv------DGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs-EMlAs 280 (508)
T KOG0275|consen 210 FGQKSHVECARFSP--DGQYLVSGSV------DGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS-EMLAS 280 (508)
T ss_pred cccccchhheeeCC--CCceEeeccc------cceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH-HHhhc
Confidence 55667888999999 7999999987 9999999998765211 11 1112367889999999998 59999
Q ss_pred EEcCCeEEEEEeCCCCCCCCceeec-cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEE
Q 021121 79 AVADGSVKIYDTALPPTANPIRSLH-EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATW 157 (317)
Q Consensus 79 ~~~dg~i~v~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~ 157 (317)
|+.||.|++|.+.++ .+++.+. .|...|+|+.|+.|+. .+++++.|.++++.-+++|++++.+++|.+.|+...|
T Consensus 281 GsqDGkIKvWri~tG---~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f 356 (508)
T KOG0275|consen 281 GSQDGKIKVWRIETG---QCLRRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATF 356 (508)
T ss_pred cCcCCcEEEEEEecc---hHHHHhhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccchhHHHhcCccccccceEE
Confidence 999999999999987 7777776 8999999999999998 8999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc--CccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec-
Q 021121 158 NPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA--HEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG- 234 (317)
Q Consensus 158 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~- 234 (317)
.++ ++.+++++.||+|++|+..+.+++.+++. .+.+|+++-.-|.+...++++...+++++.++... .+..+..
T Consensus 357 t~d-G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ--vVrsfsSG 433 (508)
T KOG0275|consen 357 TDD-GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ--VVRSFSSG 433 (508)
T ss_pred cCC-CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce--EEeeeccC
Confidence 999 89999999999999999999999888764 45678999998988899999999999999998752 2444432
Q ss_pred --CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121 235 --HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309 (317)
Q Consensus 235 --~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~ 309 (317)
..+..-+.+.+|.|. ++++.+.|+.++.|.+.+++ +-..+.-|+..+.+++-+|. .++|++-+.||.+++|.
T Consensus 434 kREgGdFi~~~lSpkGe-wiYcigED~vlYCF~~~sG~-LE~tl~VhEkdvIGl~HHPH-qNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 434 KREGGDFINAILSPKGE-WIYCIGEDGVLYCFSVLSGK-LERTLPVHEKDVIGLTHHPH-QNLLASYSEDGLLKLWK 507 (508)
T ss_pred CccCCceEEEEecCCCc-EEEEEccCcEEEEEEeecCc-eeeeeecccccccccccCcc-cchhhhhcccchhhhcC
Confidence 234566788999999 79999999999999999987 66788899999999999998 89999999999999996
No 55
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=3.2e-36 Score=235.29 Aligned_cols=258 Identities=19% Similarity=0.395 Sum_probs=218.8
Q ss_pred eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcce-------eeeeecCCCCeeEEEecCCCCCeE
Q 021121 4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALT-------ELVAFDTADGVYDLAWSESHDSLL 76 (317)
Q Consensus 4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~l 76 (317)
+.|+..|..+.+-|+++..+++.+. .+.|+|||..+...... .+...+|...-+.++|++.....|
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~-------~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~L 193 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTS-------SGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTL 193 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCC-------CCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeE
Confidence 5688999999999974444333333 88999999976543222 234557777778899999888899
Q ss_pred EEEEcCCeEEEEEeCCCCC----CCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC--CCceeEEeecccc
Q 021121 77 IAAVADGSVKIYDTALPPT----ANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD--RPTSVRTFKEHAY 150 (317)
Q Consensus 77 ~~~~~dg~i~v~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~--~~~~~~~~~~~~~ 150 (317)
++++.|+.|++||+..... ..+...+.+|...|..++|++....+|++++.|+.+.|||++ +.++.+...+|.+
T Consensus 194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~ 273 (422)
T KOG0264|consen 194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA 273 (422)
T ss_pred eeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence 9999999999999986543 345567889999999999999888899999999999999999 5566777789999
Q ss_pred ceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC-CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCc--
Q 021121 151 CVYNATWNPRHSDVFCSASGDCTLRIWDVREM-GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV-- 227 (317)
Q Consensus 151 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-- 227 (317)
+++|++|+|.++.+||+|+.|++|.+||+|+. +++..+.+|+..|.++.|+|.....|++++.|+.+.+||+..-..
T Consensus 274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred ceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 99999999999999999999999999999987 467788999999999999998899999999999999999975322
Q ss_pred -----------cEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121 228 -----------PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV 268 (317)
Q Consensus 228 -----------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~ 268 (317)
++....+|...|..+.|+|+.+..+++.+.|+.+.||++..
T Consensus 354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 24566789999999999999998999999999999999763
No 56
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.5e-34 Score=232.46 Aligned_cols=244 Identities=30% Similarity=0.451 Sum_probs=217.0
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD 137 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 137 (317)
.|..+|.+++|+|++ .++++++.+|.+++|++... .....+..|...+..+.|+|+++ .+++++.+|.|++||+.
T Consensus 7 ~h~~~i~~~~~~~~~-~~l~~~~~~g~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 7 GHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETG---ELLRTLKGHTGPVRDVAASADGT-YLASGSSDKTIRLWDLE 81 (289)
T ss_pred ccCCCEEEEEEcCCC-CEEEEeecCcEEEEEEeeCC---CcEEEEecCCcceeEEEECCCCC-EEEEEcCCCeEEEEEcC
Confidence 688999999999997 59999999999999999865 46667778999999999999986 89999999999999999
Q ss_pred CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcE
Q 021121 138 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSI 217 (317)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i 217 (317)
+++....+..|...+.++.|+|+ +.++++++.+|.+++||+++++....+..|...+.+++|+| ++.++++++.++.|
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i 159 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTI 159 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcE
Confidence 98888888888889999999998 78888888899999999998888888888888999999999 78888888889999
Q ss_pred EEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEE
Q 021121 218 KIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLA 297 (317)
Q Consensus 218 ~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 297 (317)
++||++..+ +...+..|...+.++.|+|+++ .+++++.++.|++||++..+ ....+..|...+.+++|+|+ +.+++
T Consensus 160 ~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~-~~~~~ 235 (289)
T cd00200 160 KLWDLRTGK-CVATLTGHTGEVNSVAFSPDGE-KLLSSSSDGTIKLWDLSTGK-CLGTLRGHENGVNSVAFSPD-GYLLA 235 (289)
T ss_pred EEEEccccc-cceeEecCccccceEEECCCcC-EEEEecCCCcEEEEECCCCc-eecchhhcCCceEEEEEcCC-CcEEE
Confidence 999998765 4667778888999999999998 57777789999999998765 55667688889999999998 78888
Q ss_pred EeecCCcEEEEecCC
Q 021121 298 STGWDELVYVWQQGM 312 (317)
Q Consensus 298 s~~~dg~i~~w~~~~ 312 (317)
+++.||.|++|++..
T Consensus 236 ~~~~~~~i~i~~~~~ 250 (289)
T cd00200 236 SGSEDGTIRVWDLRT 250 (289)
T ss_pred EEcCCCcEEEEEcCC
Confidence 888899999999975
No 57
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.4e-36 Score=220.44 Aligned_cols=286 Identities=16% Similarity=0.286 Sum_probs=241.1
Q ss_pred ecCcceeEEEEecC-CCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC
Q 021121 5 KTPFNGYSVKFSPF-YESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG 83 (317)
Q Consensus 5 ~~~~~v~~~~~~p~-~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 83 (317)
.|..+|..++|||. .++.|+++.+. ||.-.+-+-+++.. +- ...+|++.|.....+.+. ...++++.|-
T Consensus 12 ghtrpvvdl~~s~itp~g~flisa~k------d~~pmlr~g~tgdw-ig--tfeghkgavw~~~l~~na-~~aasaaadf 81 (334)
T KOG0278|consen 12 GHTRPVVDLAFSPITPDGYFLISASK------DGKPMLRNGDTGDW-IG--TFEGHKGAVWSATLNKNA-TRAASAAADF 81 (334)
T ss_pred CCCcceeEEeccCCCCCceEEEEecc------CCCchhccCCCCCc-EE--eeeccCcceeeeecCchh-hhhhhhcccc
Confidence 37789999999983 46888888876 77777666555542 11 223799999999999875 6888999999
Q ss_pred eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc-eeEEeeccccceEEEEEecCCC
Q 021121 84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT-SVRTFKEHAYCVYNATWNPRHS 162 (317)
Q Consensus 84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~ 162 (317)
+-++||.-++ ..+..+. |+.-|.+++|+.|.. +|++|+.+..++|||++..+ +...+.+|.+.|..+.|... .
T Consensus 82 takvw~a~tg---delhsf~-hkhivk~~af~~ds~-~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~e-D 155 (334)
T KOG0278|consen 82 TAKVWDAVTG---DELHSFE-HKHIVKAVAFSQDSN-YLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHE-D 155 (334)
T ss_pred hhhhhhhhhh---hhhhhhh-hhheeeeEEecccch-hhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEecc-C
Confidence 9999998876 5555554 889999999999987 99999999999999998764 56678899999999999987 7
Q ss_pred CeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEE
Q 021121 163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKV 242 (317)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~ 242 (317)
+.+++++.|++||+||.++++.++++. ...+|+++.+++ ++++|.++ ..+.|.+||..+... ++..+ -...|.+.
T Consensus 156 ~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~-dG~ilTia-~gssV~Fwdaksf~~-lKs~k-~P~nV~SA 230 (334)
T KOG0278|consen 156 KCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQ-DGRILTIA-YGSSVKFWDAKSFGL-LKSYK-MPCNVESA 230 (334)
T ss_pred ceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeecc-CCCEEEEe-cCceeEEeccccccc-eeecc-Cccccccc
Confidence 778888999999999999999999887 567899999999 88877765 467899999998764 55544 34578999
Q ss_pred EecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121 243 KFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 243 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
.++|+.. ++++|++|..++.||..+++++-....+|.++|.++.|+|+ +...++|+.||+|++|.+...
T Consensus 231 SL~P~k~-~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPd-GE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 231 SLHPKKE-FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPD-GELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred cccCCCc-eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCC-CceeeccCCCceEEEEEecCC
Confidence 9999986 79999999999999999998665556899999999999999 889999999999999998764
No 58
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-35 Score=210.78 Aligned_cols=278 Identities=16% Similarity=0.225 Sum_probs=230.7
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
+..+|.++.|+- ++.++.+++. |.+|++|+...+. .++.. .+|...|..++.+.|+ ..+++|+.|..+
T Consensus 16 ~qgaV~avryN~--dGnY~ltcGs------drtvrLWNp~rg~-liktY--sghG~EVlD~~~s~Dn-skf~s~GgDk~v 83 (307)
T KOG0316|consen 16 AQGAVRAVRYNV--DGNYCLTCGS------DRTVRLWNPLRGA-LIKTY--SGHGHEVLDAALSSDN-SKFASCGGDKAV 83 (307)
T ss_pred cccceEEEEEcc--CCCEEEEcCC------CceEEeecccccc-eeeee--cCCCceeeeccccccc-cccccCCCCceE
Confidence 568999999999 6777777776 8999999987664 12222 2788899999999887 699999999999
Q ss_pred EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC--ceeEEeeccccceEEEEEecCCCC
Q 021121 86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP--TSVRTFKEHAYCVYNATWNPRHSD 163 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~ 163 (317)
.+||+.++ +..+.+.+|.+.|+.++|+.+.. .+++|+.|.++++||.++. ++++.+......|.++..+ +.
T Consensus 84 ~vwDV~TG---kv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~h 156 (307)
T KOG0316|consen 84 QVWDVNTG---KVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EH 156 (307)
T ss_pred EEEEcccC---eeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---cc
Confidence 99999988 88999999999999999999887 9999999999999999865 6788888888899999987 66
Q ss_pred eEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCce--eE
Q 021121 164 VFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAV--RK 241 (317)
Q Consensus 164 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v--~~ 241 (317)
.+++|+.||+++.||++.+.....+- ..+|+++.|++ +++..++++.|+++++.|-.+++. +...++|...- ..
T Consensus 157 eIvaGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~-d~nc~La~~l~stlrLlDk~tGkl-L~sYkGhkn~eykld 232 (307)
T KOG0316|consen 157 EIVAGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSK-DGNCSLASSLDSTLRLLDKETGKL-LKSYKGHKNMEYKLD 232 (307)
T ss_pred EEEeeccCCcEEEEEeecceeehhhc--CCcceeEEecC-CCCEEEEeeccceeeecccchhHH-HHHhcccccceeeee
Confidence 79999999999999999987665554 46799999999 999999999999999999999874 77888887543 34
Q ss_pred EEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccce-eEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEF-AVGVDMSVLVEGLLASTGWDELVYVWQQ 310 (317)
Q Consensus 242 ~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~~dg~i~~w~~ 310 (317)
.+++.... .+++|++||.+.+||+.... ++..+..+... +.+++++|. ...|+++.. +.+..|.-
T Consensus 233 c~l~qsdt-hV~sgSEDG~Vy~wdLvd~~-~~sk~~~~~~v~v~dl~~hp~-~~~f~~A~~-~~~~~~~~ 298 (307)
T KOG0316|consen 233 CCLNQSDT-HVFSGSEDGKVYFWDLVDET-QISKLSVVSTVIVTDLSCHPT-MDDFITATG-HGDLFWYQ 298 (307)
T ss_pred eeecccce-eEEeccCCceEEEEEeccce-eeeeeccCCceeEEeeecccC-ccceeEecC-Cceeceee
Confidence 56666655 69999999999999999876 56677777776 899999998 444555443 44556643
No 59
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=4.4e-34 Score=240.63 Aligned_cols=233 Identities=22% Similarity=0.331 Sum_probs=189.0
Q ss_pred eecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCC----CCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEE
Q 021121 56 AFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPT----ANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTV 131 (317)
Q Consensus 56 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v 131 (317)
..+|.+.|++++|+|.++.+|++|+.|++|++||+..... ..++..+.+|...|.+++|+|++.++|++++.|+.|
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV 150 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV 150 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence 3478999999999994336999999999999999975421 235667889999999999999876699999999999
Q ss_pred EEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccc-eEEEEecCCCCcEEEE
Q 021121 132 KLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFE-ILACDWNKYDDCLIAS 210 (317)
Q Consensus 132 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~i~~~~~~~~~l~~ 210 (317)
++||+++++....+..|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..|... ...+.|.+ ++..+++
T Consensus 151 rIWDl~tg~~~~~l~~h~~~V~sla~spd-G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~-~~~~ivt 228 (493)
T PTZ00421 151 NVWDVERGKAVEVIKCHSDQITSLEWNLD-GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK-RKDLIIT 228 (493)
T ss_pred EEEECCCCeEEEEEcCCCCceEEEEEECC-CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC-CCCeEEE
Confidence 99999999999899999999999999998 899999999999999999999988888888754 45678888 6666665
Q ss_pred Ee----cCCcEEEEEccCCCccEEEEecC-CCceeEEEecCCCCeeEEeee-cCCeEEEEecccccceeeeeecccceeE
Q 021121 211 AS----VDKSIKIWDVRNYRVPIAVLNGH-GYAVRKVKFSPHRRNLLASCS-YDMTVCLWDFMVEDALVGRYDHHTEFAV 284 (317)
Q Consensus 211 ~~----~d~~i~v~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~v~ 284 (317)
++ .|+.|++||+++...++.....+ ...+....|++++. +|++++ .|+.|++||+.+++........+..++.
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~-~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~ 307 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTN-LLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHK 307 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCC-EEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCc
Confidence 44 47899999999877666655433 34556677899998 566666 5999999999987743332233456788
Q ss_pred eEEEEec
Q 021121 285 GVDMSVL 291 (317)
Q Consensus 285 ~~~~~~~ 291 (317)
+++|.|.
T Consensus 308 g~~~~pk 314 (493)
T PTZ00421 308 GLCMMPK 314 (493)
T ss_pred ceEeccc
Confidence 8999885
No 60
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.3e-36 Score=247.99 Aligned_cols=294 Identities=22% Similarity=0.339 Sum_probs=242.0
Q ss_pred CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecC----CCCeeEEEecCCCCCeEEEEEcC
Q 021121 7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDT----ADGVYDLAWSESHDSLLIAAVAD 82 (317)
Q Consensus 7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~d 82 (317)
.....+++.+++ ..++++++. ..+.||.+++..........+.. .-.+..++|.....++||+++..
T Consensus 39 k~~~nAIs~nr~-~~qiv~AGr--------s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~n 109 (839)
T KOG0269|consen 39 KAKANAISVNRD-INQIVVAGR--------SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTN 109 (839)
T ss_pred ccccceEeecCC-cceeEEecc--------cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCC
Confidence 345567778885 456666654 37888888876543332222211 22456788987667899999999
Q ss_pred CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCC
Q 021121 83 GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS 162 (317)
Q Consensus 83 g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (317)
|.|.+||+......+.+..+..|...+++++|++..+++|++|+.||.|++||++..+....+.+....|..+.|+|..+
T Consensus 110 G~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~ 189 (839)
T KOG0269|consen 110 GVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYG 189 (839)
T ss_pred CcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCC
Confidence 99999999875445677788999999999999999999999999999999999999988888888889999999999989
Q ss_pred CeEEEEeCCCeEEEEeCCCC-CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeE
Q 021121 163 DVFCSASGDCTLRIWDVREM-GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241 (317)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~ 241 (317)
+.|+++.+.|.+++||+|.. +...++..|.++|.|+.|+| ++.+||+|+.|+.|+|||..+.+...........+|.+
T Consensus 190 ~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~r 268 (839)
T KOG0269|consen 190 NKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGR 268 (839)
T ss_pred ceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEeccCCCccceeEEeecceeee
Confidence 99999999999999999976 45667889999999999999 99999999999999999998655322222224568999
Q ss_pred EEecCCCCeeEEeee--cCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121 242 VKFSPHRRNLLASCS--YDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ 310 (317)
Q Consensus 242 ~~~~~~~~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~ 310 (317)
+.|-|..++.|++++ .|-.|+|||++..-.+...+..|...++.++|.......+.+++.||.|..-.+
T Consensus 269 VkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 269 VKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred eeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhh
Confidence 999999998888877 577899999999888888999999999999998744568999999998765443
No 61
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.1e-36 Score=239.45 Aligned_cols=250 Identities=22% Similarity=0.344 Sum_probs=217.7
Q ss_pred ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEc
Q 021121 57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTV 136 (317)
Q Consensus 57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~ 136 (317)
.+|..+|+++.|.|....+|++++.|+.|+||++-. ...+++++.+|..+|.+++|+++|. .+++++.|+.|++||+
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~--~~~~lrtf~gH~k~Vrd~~~s~~g~-~fLS~sfD~~lKlwDt 287 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD--DRRCLRTFKGHRKPVRDASFNNCGT-SFLSASFDRFLKLWDT 287 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEEec--CcceehhhhcchhhhhhhhccccCC-eeeeeecceeeeeecc
Confidence 379999999999994448999999999999999985 3588999999999999999999998 8999999999999999
Q ss_pred CCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCc
Q 021121 137 DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKS 216 (317)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~ 216 (317)
++|+++..+. ....++|+.|+|++.+++++|+.|+.|+.||+|+++.++.+..|-+.|..+.|-+ ++..+++.++|++
T Consensus 288 ETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~-~g~rFissSDdks 365 (503)
T KOG0282|consen 288 ETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVD-EGRRFISSSDDKS 365 (503)
T ss_pred ccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEcc-CCceEeeeccCcc
Confidence 9999999987 4567999999999779999999999999999999999999999999999999999 9999999999999
Q ss_pred EEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc--ceeeeeeccc--ceeEeEEEEecc
Q 021121 217 IKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED--ALVGRYDHHT--EFAVGVDMSVLV 292 (317)
Q Consensus 217 i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~--~~v~~~~~~~~~ 292 (317)
++||+.+.+-........+.....++..+|+++ ++++-+.|+.|.++.+...- .....+.+|. +.-..+.||||
T Consensus 366 ~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD- 443 (503)
T KOG0282|consen 366 VRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD- 443 (503)
T ss_pred EEEEEcCCCccchhhcchhhccCcceecCCCCC-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC-
Confidence 999999876532222333344677899999999 79999999999999875533 2234566775 45567899999
Q ss_pred CCeEEEeecCCcEEEEecCCC
Q 021121 293 EGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 293 ~~~l~s~~~dg~i~~w~~~~~ 313 (317)
+.+|++|+.||.+.+||..+-
T Consensus 444 G~~l~SGdsdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 444 GRTLCSGDSDGKVNFWDWKTT 464 (503)
T ss_pred CCeEEeecCCccEEEeechhh
Confidence 899999999999999998764
No 62
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-35 Score=234.26 Aligned_cols=246 Identities=20% Similarity=0.308 Sum_probs=215.7
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD 137 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 137 (317)
...+.|.+++|+|..+.-+|+.+. -.+.+|+.... ...+.+...+..+.+++|..||+ ++++|+..|.|++||+.
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~---~~~k~~srFk~~v~s~~fR~DG~-LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTR---SVRKTFSRFKDVVYSVDFRSDGR-LLAAGDESGHVKVFDMK 98 (487)
T ss_pred cccCcceeEecCCCCCCceEEecc-cEEEEEecchh---hhhhhHHhhccceeEEEeecCCe-EEEccCCcCcEEEeccc
Confidence 345689999999988777777664 46999998765 55555666788999999999999 99999999999999988
Q ss_pred CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcE
Q 021121 138 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSI 217 (317)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i 217 (317)
+...++.+.+|+.++..+.|+|+++.++++|++|+.+++||+.+......+.+|+..|.|.+|+|.++.++++|+.||.|
T Consensus 99 ~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~v 178 (487)
T KOG0310|consen 99 SRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKV 178 (487)
T ss_pred cHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceE
Confidence 77788899999999999999999899999999999999999998887668889999999999999888899999999999
Q ss_pred EEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEE
Q 021121 218 KIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLA 297 (317)
Q Consensus 218 ~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 297 (317)
++||++.....+..+ .|+.+|.++.+-|.|. ++++++ ...|+|||+.++...+..+..|...|+|+++..+ +..|+
T Consensus 179 rl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs-~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~-~~rLl 254 (487)
T KOG0310|consen 179 RLWDTRSLTSRVVEL-NHGCPVESVLALPSGS-LIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASD-STRLL 254 (487)
T ss_pred EEEEeccCCceeEEe-cCCCceeeEEEcCCCC-EEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecC-CceEe
Confidence 999999875444444 5899999999999998 688776 5679999999887777778889999999999998 78999
Q ss_pred EeecCCcEEEEecCC
Q 021121 298 STGWDELVYVWQQGM 312 (317)
Q Consensus 298 s~~~dg~i~~w~~~~ 312 (317)
++|-|+.+++||+..
T Consensus 255 S~sLD~~VKVfd~t~ 269 (487)
T KOG0310|consen 255 SGSLDRHVKVFDTTN 269 (487)
T ss_pred ecccccceEEEEccc
Confidence 999999999999643
No 63
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.6e-34 Score=243.65 Aligned_cols=277 Identities=22% Similarity=0.331 Sum_probs=238.3
Q ss_pred CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEE
Q 021121 7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVK 86 (317)
Q Consensus 7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 86 (317)
...+.+..|++ +.+..+.. +..|++|+..... .......+|.+.|.++++.. +..++++|+.|.+++
T Consensus 208 ~~~~~~~q~~~---~~~~~~s~-------~~tl~~~~~~~~~--~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~r 274 (537)
T KOG0274|consen 208 DHVVLCLQLHD---GFFKSGSD-------DSTLHLWDLNNGY--LILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTER 274 (537)
T ss_pred cchhhhheeec---CeEEecCC-------CceeEEeecccce--EEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEE
Confidence 45566777774 55555554 8899999998765 22222458999999999987 457999999999999
Q ss_pred EEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEE
Q 021121 87 IYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFC 166 (317)
Q Consensus 87 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 166 (317)
+||..++ .+...+.+|.+.|.++...+. .+++|+.|.+|++|+++++..+..+.+|.++|.++..+ +.+++
T Consensus 275 vWd~~sg---~C~~~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~lv 345 (537)
T KOG0274|consen 275 VWDCSTG---ECTHSLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLLV 345 (537)
T ss_pred eEecCCC---cEEEEecCCCceEEEEEccCc---eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEEE
Confidence 9998877 899999999999999988743 78889999999999999999999999999999999998 67999
Q ss_pred EEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecC
Q 021121 167 SASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSP 246 (317)
Q Consensus 167 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~ 246 (317)
+|+.|++|++||..+++++..+.+|...|.++.+.+ . +.+++|+.|++|++||+++...++..+.+|..-+..+.+.
T Consensus 346 sgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~- 422 (537)
T KOG0274|consen 346 SGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR- 422 (537)
T ss_pred EEecCceEEEEEhhhceeeeeecCCcceEEEEEecC-c-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc-
Confidence 999999999999999999999999999999998876 3 8999999999999999999745689999999988777764
Q ss_pred CCCeeEEeeecCCeEEEEecccccceeeeeec-ccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121 247 HRRNLLASCSYDMTVCLWDFMVEDALVGRYDH-HTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP 314 (317)
Q Consensus 247 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~ 314 (317)
++ +|++++.|++|++||..+++ +...+.+ |...|..+++. ...+++++.||.+++||+...+
T Consensus 423 -~~-~Lvs~~aD~~Ik~WD~~~~~-~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 423 -DN-FLVSSSADGTIKLWDAEEGE-CLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred -cc-eeEeccccccEEEeecccCc-eeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEecccCc
Confidence 44 79999999999999999987 5566776 66888888876 4678899999999999998764
No 64
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=5e-34 Score=208.25 Aligned_cols=284 Identities=20% Similarity=0.248 Sum_probs=239.8
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
+..++.+++|+. ++.-+++++. |+.+.+|++.... ........+|.+.|-.++|+|..+.++++++.|.+|
T Consensus 19 ~~~~v~Sv~wn~--~g~~lasgs~------dktv~v~n~e~~r-~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~i 89 (313)
T KOG1407|consen 19 HVQKVHSVAWNC--DGTKLASGSF------DKTVSVWNLERDR-FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTI 89 (313)
T ss_pred hhhcceEEEEcc--cCceeeeccc------CCceEEEEecchh-hhhhhcccCCCcchhhheeCCCCCcceEEecCCceE
Confidence 667899999999 6777777765 9999999998774 344555568888999999999888899999999999
Q ss_pred EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121 86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF 165 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 165 (317)
++||+... ++........+. .-+.|+|+|. ++++++.|..|...|.++.+.....+ ....+..+.|+-+ ++++
T Consensus 90 r~wd~r~~---k~~~~i~~~~en-i~i~wsp~g~-~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~-nd~F 162 (313)
T KOG1407|consen 90 RIWDIRSG---KCTARIETKGEN-INITWSPDGE-YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNS-NDLF 162 (313)
T ss_pred EEEEeccC---cEEEEeeccCcc-eEEEEcCCCC-EEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCC-CCEE
Confidence 99999877 666655544444 4578999998 99999999999999999887776655 5667889999965 7888
Q ss_pred EEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEec
Q 021121 166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFS 245 (317)
Q Consensus 166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~ 245 (317)
+.....|+|.|......+++..++.|.....||.|+| +|+++|+|+.|-.+.+||+...- +.+.+..+.-+|+.+.|+
T Consensus 163 flt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELi-C~R~isRldwpVRTlSFS 240 (313)
T KOG1407|consen 163 FLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELI-CERCISRLDWPVRTLSFS 240 (313)
T ss_pred EEecCCceEEEEeccccccccccccCCcceEEEEECC-CCceEeeccccceeeccChhHhh-hheeeccccCceEEEEec
Confidence 7777789999999999999999999999999999999 99999999999999999998765 477888899999999999
Q ss_pred CCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecC---------CcEEEEecC
Q 021121 246 PHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWD---------ELVYVWQQG 311 (317)
Q Consensus 246 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---------g~i~~w~~~ 311 (317)
.+|+ +||++++|..|-|=+++++..+. . ..+.++...++|+|. ..+||-++.| |.+++|-+.
T Consensus 241 ~dg~-~lASaSEDh~IDIA~vetGd~~~-e-I~~~~~t~tVAWHPk-~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 241 HDGR-MLASASEDHFIDIAEVETGDRVW-E-IPCEGPTFTVAWHPK-RPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred cCcc-eeeccCccceEEeEecccCCeEE-E-eeccCCceeEEecCC-CceeeEEecCCCCccccccceeEEecCC
Confidence 9999 79999999999999999998543 2 346788999999997 6677665543 677777654
No 65
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.9e-36 Score=228.12 Aligned_cols=283 Identities=18% Similarity=0.249 Sum_probs=231.5
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
|.+.|.|++=+|.....+ ++++. ||.|+|||+..... . .....|.+.|..|++.. ..+++++.|.+|
T Consensus 65 HrdGV~~lakhp~~ls~~-aSGs~------DG~VkiWnlsqR~~-~--~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtv 131 (433)
T KOG0268|consen 65 HRDGVSCLAKHPNKLSTV-ASGSC------DGEVKIWNLSQREC-I--RTFKAHEGLVRGICVTQ---TSFFTVGDDKTV 131 (433)
T ss_pred cccccchhhcCcchhhhh-hcccc------CceEEEEehhhhhh-h--heeecccCceeeEEecc---cceEEecCCcce
Confidence 778999999999422333 33333 99999999987652 1 22226888999999986 368888899999
Q ss_pred EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121 86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF 165 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 165 (317)
+.|.++.+ +..++.+ ...+..+.-+..+. .+++++. .|.|||.+...++..+.-....|.++.|+|....+|
T Consensus 132 K~wk~~~~----p~~tilg-~s~~~gIdh~~~~~-~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsIL 203 (433)
T KOG0268|consen 132 KQWKIDGP----PLHTILG-KSVYLGIDHHRKNS-VFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSIL 203 (433)
T ss_pred eeeeccCC----cceeeec-cccccccccccccc-cccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchhe
Confidence 99998753 5555543 45666666665555 7888885 599999999999999988888899999999988999
Q ss_pred EEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEec
Q 021121 166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFS 245 (317)
Q Consensus 166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~ 245 (317)
++|+.|+.|.+||+++..++..+. ....-+.|+|+| ....++++.+|..++.||++....++....+|.+.|.++.|+
T Consensus 204 as~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs 281 (433)
T KOG0268|consen 204 ASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS 281 (433)
T ss_pred eeeccCCceEEEecccCCccceee-eeccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccC
Confidence 999999999999999999888775 445668899999 999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121 246 PHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 246 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
|.|+. +++||.|.+|+||.++.+...--.....-..|.++.||.| .+++++||+|+.|++|.-...
T Consensus 282 ptG~E-fvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~D-skyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 282 PTGQE-FVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMD-SKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred CCcch-hccccccceEEEeecCCCcchhhhhHhhhheeeEEEEecc-ccEEEecCCCcceeeeecchh
Confidence 99995 9999999999999988765211111111246999999999 899999999999999987653
No 66
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.4e-34 Score=247.97 Aligned_cols=296 Identities=21% Similarity=0.291 Sum_probs=241.0
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCC--------cceee-eeecCCCCeeEEEecCCCCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAP--------ALTEL-VAFDTADGVYDLAWSESHDSLL 76 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~--------~~~~~-~~~~~~~~v~~~~~~~~~~~~l 76 (317)
+...|++++.+| ++..++++++. .||.++||+.+.-.. ....+ ....|.+.|+|+.|+||| .+|
T Consensus 12 ~~~~IfSIdv~p--dg~~~aTgGq~----~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG-~~l 84 (942)
T KOG0973|consen 12 NEKSIFSIDVHP--DGVKFATGGQV----LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG-SYL 84 (942)
T ss_pred CCeeEEEEEecC--CceeEecCCcc----ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCC-CeE
Confidence 346799999999 56666666632 288888999864221 01112 223789999999999999 699
Q ss_pred EEEEcCCeEEEEEeCCC---------------CCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce
Q 021121 77 IAAVADGSVKIYDTALP---------------PTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS 141 (317)
Q Consensus 77 ~~~~~dg~i~v~~~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 141 (317)
|+|++|+.|.||+.... +.++....+.+|...|..++|+|++. ++++++.|++|.+|+..+.+.
T Consensus 85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~~ 163 (942)
T KOG0973|consen 85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFEL 163 (942)
T ss_pred eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEcccccee
Confidence 99999999999998730 22345667889999999999999998 999999999999999999999
Q ss_pred eEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccC------ccceEEEEecCCCCcEEEEEec--
Q 021121 142 VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAH------EFEILACDWNKYDDCLIASASV-- 213 (317)
Q Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~v~~i~~~~~~~~~l~~~~~-- 213 (317)
+..+++|.+.|..+.|.|- +++|++-+.|++|++|++.+-...+.+..+ ...+..+.|+| +|.+|++...
T Consensus 164 ~~vl~~H~s~VKGvs~DP~-Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP-DG~~las~nA~n 241 (942)
T KOG0973|consen 164 LKVLRGHQSLVKGVSWDPI-GKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP-DGHHLASPNAVN 241 (942)
T ss_pred eeeeecccccccceEECCc-cCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC-CcCeecchhhcc
Confidence 9999999999999999999 999999999999999997765555555432 33578999999 9999998643
Q ss_pred --CCcEEEEEccCCCccEEEEecCCCceeEEEecCC--------C-------Ce-eEEeeecCCeEEEEecccccceeee
Q 021121 214 --DKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPH--------R-------RN-LLASCSYDMTVCLWDFMVEDALVGR 275 (317)
Q Consensus 214 --d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~--------~-------~~-~l~~~~~d~~i~vwd~~~~~~~~~~ 275 (317)
-..+.|.+-.+.+. -..+.+|..++.++.|+|. | .+ ++|+|+.|++|.||.....++++-.
T Consensus 242 ~~~~~~~IieR~tWk~-~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi 320 (942)
T KOG0973|consen 242 GGKSTIAIIERGTWKV-DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI 320 (942)
T ss_pred CCcceeEEEecCCcee-eeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh
Confidence 23688888766553 5678899999999999982 1 11 6899999999999999887766655
Q ss_pred eecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121 276 YDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 276 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
..-....|.+++|+|| |..|++++.||+|.+..++.+
T Consensus 321 ~~lf~~SI~DmsWspd-G~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 321 HNLFNKSIVDMSWSPD-GFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhcCceeeeeEcCC-CCeEEEEecCCeEEEEEcchH
Confidence 5666778999999999 889999999999999998764
No 67
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.3e-35 Score=243.73 Aligned_cols=248 Identities=19% Similarity=0.329 Sum_probs=204.6
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCC--------------------------------C------------
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTAL--------------------------------P------------ 93 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~--------------------------------~------------ 93 (317)
.|.+.|.++.|++|| ++||+|+.|+.|+||.+.. .
T Consensus 265 ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 588999999999999 6999999999999998876 0
Q ss_pred -------------CCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecC
Q 021121 94 -------------PTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR 160 (317)
Q Consensus 94 -------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (317)
-..+++..+.+|.+.|..+.|+.++ +|++++.|.+|++|++...++++.|. |..-|+|++|+|.
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPv 420 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPV 420 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEeccc
Confidence 0113455678899999999999875 89999999999999999999999987 8999999999999
Q ss_pred CCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe--cC---
Q 021121 161 HSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN--GH--- 235 (317)
Q Consensus 161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~--- 235 (317)
+.++|++|+-||+|+||++...+...- .....-|++++|.| +|+..++|+.+|.+++|+....+. ..... .|
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~-~~~~~I~~~~~K 497 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKVVDW-NDLRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKL-VSDFHIRLHNKK 497 (712)
T ss_pred CCCcEeecccccceEEeecCcCeeEee-hhhhhhheeEEecc-CCceEEEEEeccEEEEEEccCCeE-EEeeeEeeccCc
Confidence 999999999999999999987655443 33457899999999 899999999999999999987653 22211 11
Q ss_pred ---CCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccc--eeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121 236 ---GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE--FAVGVDMSVLVEGLLASTGWDELVYVWQQ 310 (317)
Q Consensus 236 ---~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~i~~w~~ 310 (317)
...|+.+.|.|....-+++.+.|..|+|+|.++.+ ++..+.++.. .-....|+.+ +++|++++.|..|++|++
T Consensus 498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~-lv~KfKG~~n~~SQ~~Asfs~D-gk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD-LVHKFKGFRNTSSQISASFSSD-GKHIVSASEDSWVYIWKN 575 (712)
T ss_pred cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh-hhhhhcccccCCcceeeeEccC-CCEEEEeecCceEEEEeC
Confidence 23799999998766546667789999999997765 5566665433 2345688888 899999999999999998
Q ss_pred CCCC
Q 021121 311 GMDP 314 (317)
Q Consensus 311 ~~~~ 314 (317)
...+
T Consensus 576 ~~~~ 579 (712)
T KOG0283|consen 576 DSFN 579 (712)
T ss_pred CCCc
Confidence 6544
No 68
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.6e-32 Score=196.95 Aligned_cols=293 Identities=19% Similarity=0.291 Sum_probs=230.8
Q ss_pred ceecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCC-----------CC-cceeeeeecCCCCeeEEEecC
Q 021121 3 VFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPA-----------AP-ALTELVAFDTADGVYDLAWSE 70 (317)
Q Consensus 3 ~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~-----------~~-~~~~~~~~~~~~~v~~~~~~~ 70 (317)
.++..+.|++++|+| .+.+.+.+++ ..+++|-....- .+ .........|.+.|.|.+|+|
T Consensus 28 ~l~dsqairav~fhp--~g~lyavgsn------skt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 28 ILEDSQAIRAVAFHP--AGGLYAVGSN------SKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred EecchhheeeEEecC--CCceEEeccC------CceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC
Confidence 355678899999999 4555554443 567776654321 01 111223336889999999999
Q ss_pred CCCCeEEEEEcCCeEEEEEeCCCCC--CCCceeeccCCcceEEEEEecC---CCCEEEEEc-CCCEEEEEEcCCCceeEE
Q 021121 71 SHDSLLIAAVADGSVKIYDTALPPT--ANPIRSLHEHTREVHSADYNPT---RRDSFITSS-WDDTVKLWTVDRPTSVRT 144 (317)
Q Consensus 71 ~~~~~l~~~~~dg~i~v~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~-~dg~v~iwd~~~~~~~~~ 144 (317)
.| .++++|++|.+|++..++.... ......+.-|.+.|..++|..+ +..+|++++ .|..|++-|..+++..+.
T Consensus 100 ~g-eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a 178 (350)
T KOG0641|consen 100 CG-ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA 178 (350)
T ss_pred cc-CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence 99 5999999999999987765421 1233456779999999999643 333666654 477888889999999999
Q ss_pred eeccccceEEEE-EecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc-------CccceEEEEecCCCCcEEEEEecCCc
Q 021121 145 FKEHAYCVYNAT-WNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA-------HEFEILACDWNKYDDCLIASASVDKS 216 (317)
Q Consensus 145 ~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~~l~~~~~d~~ 216 (317)
+.+|.+-|.++- |+ +.++++|+.|.+|++||++-...+..+.. ..+.|.+++..| .+++|++|..|..
T Consensus 179 ~sghtghilalyswn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~dss 254 (350)
T KOG0641|consen 179 LSGHTGHILALYSWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHADSS 254 (350)
T ss_pred ecCCcccEEEEEEec---CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-CcceeeeccCCCc
Confidence 999999888773 43 88999999999999999998777766531 235689999999 9999999999999
Q ss_pred EEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccc---cceeeeeecccceeEeEEEEeccC
Q 021121 217 IKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE---DALVGRYDHHTEFAVGVDMSVLVE 293 (317)
Q Consensus 217 i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~ 293 (317)
..+||++.++ +++.+..|...|+++.|+|... ++.+++.|..|++-|+... +..+.....|...+..+.|+|. +
T Consensus 255 c~lydirg~r-~iq~f~phsadir~vrfsp~a~-yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~-d 331 (350)
T KOG0641|consen 255 CMLYDIRGGR-MIQRFHPHSADIRCVRFSPGAH-YLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQ-D 331 (350)
T ss_pred eEEEEeeCCc-eeeeeCCCccceeEEEeCCCce-EEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCc-c
Confidence 9999999876 5899999999999999999876 7999999999999998753 2233455678888999999998 7
Q ss_pred CeEEEeecCCcEEEEecC
Q 021121 294 GLLASTGWDELVYVWQQG 311 (317)
Q Consensus 294 ~~l~s~~~dg~i~~w~~~ 311 (317)
-.+++.+.|.++.+|-++
T Consensus 332 ~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 332 FSFISSSADKTATLWALN 349 (350)
T ss_pred ceeeeccCcceEEEeccC
Confidence 789999999999999875
No 69
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=1.6e-32 Score=232.44 Aligned_cols=249 Identities=12% Similarity=0.176 Sum_probs=191.2
Q ss_pred CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCC-----CCCceeeccCCcceE
Q 021121 36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPT-----ANPIRSLHEHTREVH 110 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~-----~~~~~~~~~~~~~v~ 110 (317)
.+.|++|+..... ......+|...|.+++|+|+.+.+|++|+.||.|++||+..... ..++..+.+|...|.
T Consensus 53 ~gvI~L~~~~r~~---~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 53 IGAIRLENQMRKP---PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred eeEEEeeecCCCc---eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 6788999876542 12223378999999999997557999999999999999975421 123456788999999
Q ss_pred EEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc
Q 021121 111 SADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA 190 (317)
Q Consensus 111 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 190 (317)
+++|+|++..++++++.|+.|++||+++++....+. +...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+.+
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswspd-G~lLat~s~D~~IrIwD~Rsg~~i~tl~g 207 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIK-GNLLSGTCVGKHMHIIDPRKQEIASSFHI 207 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCC-CCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 999999987567899999999999999998777775 5678999999999 88999999999999999999999888988
Q ss_pred CccceEEE-----EecCCCCcEEEEEecCC----cEEEEEccCCCccEEEEec--CCCceeEEEecCCCCeeEEeeecCC
Q 021121 191 HEFEILAC-----DWNKYDDCLIASASVDK----SIKIWDVRNYRVPIAVLNG--HGYAVRKVKFSPHRRNLLASCSYDM 259 (317)
Q Consensus 191 ~~~~v~~i-----~~~~~~~~~l~~~~~d~----~i~v~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~ 259 (317)
|...+.+. .|++ ++.++++++.++ .|++||+++...++..... +.+.+......+++. ++++|+.|+
T Consensus 208 H~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~-l~lsGkGD~ 285 (568)
T PTZ00420 208 HDGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGL-IYLIGKGDG 285 (568)
T ss_pred ccCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCC-EEEEEECCC
Confidence 88764332 3457 778888877764 7999999976656665433 223333333344465 788999999
Q ss_pred eEEEEecccccceeeeeecccceeEeEEEEec
Q 021121 260 TVCLWDFMVEDALVGRYDHHTEFAVGVDMSVL 291 (317)
Q Consensus 260 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 291 (317)
.|++|++..+.........+..+..+++|.|.
T Consensus 286 tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 286 NCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred eEEEEEccCCcEEeecccccCCCccceEEccc
Confidence 99999998764211112225678889999996
No 70
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=5.7e-33 Score=233.96 Aligned_cols=247 Identities=18% Similarity=0.212 Sum_probs=189.4
Q ss_pred CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCC----------CCCCCceeeccCCcceEEEEEec-CCCCEEEEEcCCCE
Q 021121 62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALP----------PTANPIRSLHEHTREVHSADYNP-TRRDSFITSSWDDT 130 (317)
Q Consensus 62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~ 130 (317)
.|+....++++. .+++++.+.....|+...+ ........+.+|.+.|.+++|+| ++. +|++|+.|+.
T Consensus 22 ~i~~~~~~~d~~-~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~-~LaSgS~Dgt 99 (493)
T PTZ00421 22 NVTPSTALWDCS-NTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ-KLFTASEDGT 99 (493)
T ss_pred ccccccccCCCC-CcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC-EEEEEeCCCE
Confidence 344455555542 4455555555555553221 11111234678999999999999 555 9999999999
Q ss_pred EEEEEcCCC-------ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCC
Q 021121 131 VKLWTVDRP-------TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKY 203 (317)
Q Consensus 131 v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 203 (317)
|++||+.++ +.+..+.+|...|.+++|+|.+.++|++++.|+.|++||+++++....+..|...|.+++|+|
T Consensus 100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp- 178 (493)
T PTZ00421 100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL- 178 (493)
T ss_pred EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC-
Confidence 999999765 346678899999999999998668999999999999999999988888989999999999999
Q ss_pred CCcEEEEEecCCcEEEEEccCCCccEEEEecCCCc-eeEEEecCCCCeeEEee---ecCCeEEEEecccccceeeeeecc
Q 021121 204 DDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYA-VRKVKFSPHRRNLLASC---SYDMTVCLWDFMVEDALVGRYDHH 279 (317)
Q Consensus 204 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~---~~d~~i~vwd~~~~~~~~~~~~~~ 279 (317)
++.+|++++.|+.|++||+++++ .+..+.+|... +..+.|.+++..++.+| +.|+.|++||+++..........+
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~-~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d 257 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGT-IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD 257 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCc-EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC
Confidence 99999999999999999999876 46777788754 45788999887444333 247999999998766554444433
Q ss_pred -cceeEeEEEEeccCCeEEEee-cCCcEEEEecCCC
Q 021121 280 -TEFAVGVDMSVLVEGLLASTG-WDELVYVWQQGMD 313 (317)
Q Consensus 280 -~~~v~~~~~~~~~~~~l~s~~-~dg~i~~w~~~~~ 313 (317)
...+....|+++ +.+|++++ .|+.|++|++..+
T Consensus 258 ~~~~~~~~~~d~d-~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 258 QSSALFIPFFDED-TNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred CCCceEEEEEcCC-CCEEEEEEeCCCeEEEEEeeCC
Confidence 334555678888 67888777 5999999999764
No 71
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=5.4e-34 Score=213.20 Aligned_cols=292 Identities=18% Similarity=0.315 Sum_probs=236.1
Q ss_pred ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCC------------CC---cceeeeeecCCCCeeEEEec
Q 021121 5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPA------------AP---ALTELVAFDTADGVYDLAWS 69 (317)
Q Consensus 5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~------------~~---~~~~~~~~~~~~~v~~~~~~ 69 (317)
.|..++++.+||| ++.++++++. |-.|+|.|.+.. .. .......++|.+.|+++.|+
T Consensus 110 ~HK~~cR~aafs~--DG~lvATGsa------D~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 110 SHKSPCRAAAFSP--DGSLVATGSA------DASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH 181 (430)
T ss_pred ecccceeeeeeCC--CCcEEEccCC------cceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec
Confidence 3788999999999 7899998886 899999998721 00 11122345899999999999
Q ss_pred CCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEe---e
Q 021121 70 ESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTF---K 146 (317)
Q Consensus 70 ~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~---~ 146 (317)
|.. .+|++|+.|++|++||+......+..+.++ ...+|.++.|+|.|. +++.|.....+++||+++.++...- .
T Consensus 182 Pre-~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~QcfvsanPd~ 258 (430)
T KOG0640|consen 182 PRE-TILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQCFVSANPDD 258 (430)
T ss_pred chh-heEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCc-eEEEecCCCceeEEeccceeEeeecCccc
Confidence 986 799999999999999998653223333333 467999999999998 9999999999999999998776544 3
Q ss_pred ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec-cCc-cceEEEEecCCCCcEEEEEecCCcEEEEEccC
Q 021121 147 EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP-AHE-FEILACDWNKYDDCLIASASVDKSIKIWDVRN 224 (317)
Q Consensus 147 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~-~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~ 224 (317)
.|.+.|+++.+++. +++.++++.||.|++||--+.+++.++. .|. ..|.+..|.. +++++++.+.|..+++|.+.+
T Consensus 259 qht~ai~~V~Ys~t-~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk-n~kyiLsSG~DS~vkLWEi~t 336 (430)
T KOG0640|consen 259 QHTGAITQVRYSST-GSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK-NGKYILSSGKDSTVKLWEIST 336 (430)
T ss_pred ccccceeEEEecCC-ccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc-CCeEEeecCCcceeeeeeecC
Confidence 58889999999999 8999999999999999998888888775 343 4688999998 999999999999999999999
Q ss_pred CCccEEEEecCC-----CceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEe
Q 021121 225 YRVPIAVLNGHG-----YAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLAST 299 (317)
Q Consensus 225 ~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 299 (317)
++. +....+-+ .--+...|+....++|.---..+.+.-||.++.......--+|.+.+..+.-+|. +..+++|
T Consensus 337 ~R~-l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~-~p~FmTc 414 (430)
T KOG0640|consen 337 GRM-LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPV-EPAFMTC 414 (430)
T ss_pred Cce-EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCC-CCceeee
Confidence 874 65555431 1224556777777544444456779999999988666667799999999999998 7799999
Q ss_pred ecCCcEEEEecC
Q 021121 300 GWDELVYVWQQG 311 (317)
Q Consensus 300 ~~dg~i~~w~~~ 311 (317)
+.|..+|+|--.
T Consensus 415 sdD~raRFWyrr 426 (430)
T KOG0640|consen 415 SDDFRARFWYRR 426 (430)
T ss_pred cccceeeeeeec
Confidence 999999999754
No 72
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.9e-33 Score=206.25 Aligned_cols=276 Identities=19% Similarity=0.300 Sum_probs=216.4
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
..+.|.+++|||. ...++++++ +||+||+|+++..+. +.......|.++|.+++|+.+| ..+++|+.|+.+
T Consensus 26 P~DsIS~l~FSP~-~~~~~~A~S------WD~tVR~wevq~~g~-~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~ 96 (347)
T KOG0647|consen 26 PEDSISALAFSPQ-ADNLLAAGS------WDGTVRIWEVQNSGQ-LVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQA 96 (347)
T ss_pred cccchheeEeccc-cCceEEecc------cCCceEEEEEecCCc-ccchhhhccCCCeEEEEEccCC-ceEEeeccCCce
Confidence 4578999999995 455555555 599999999998642 3334445789999999999998 699999999999
Q ss_pred EEEEeCCCCCCCCceeeccCCcceEEEEEecCCC-CEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCe
Q 021121 86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRR-DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDV 164 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 164 (317)
++||+.++ ....+..|.++|.++.|-+... ..|++|+.|.+|+.||++...++.++. -.++++++..- ..+
T Consensus 97 k~wDL~S~----Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~---~pm 168 (347)
T KOG0647|consen 97 KLWDLASG----QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL---YPM 168 (347)
T ss_pred EEEEccCC----CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc---Cce
Confidence 99999875 5556778999999999976432 378999999999999999998888887 45668888765 558
Q ss_pred EEEEeCCCeEEEEeCCCCCceee--eccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCc-cEEEEecCC-----
Q 021121 165 FCSASGDCTLRIWDVREMGSTMI--IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV-PIAVLNGHG----- 236 (317)
Q Consensus 165 l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~----- 236 (317)
++++..+..|.+|+++++..... .....-.++|++..+ +....+.|+-+|.+.+..+..+.. .-..++.|.
T Consensus 169 ~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~ 247 (347)
T KOG0647|consen 169 AVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSV 247 (347)
T ss_pred eEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEe-cCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCC
Confidence 88899999999999987633221 122344688999888 777779999999999998876421 233455554
Q ss_pred ----CceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEE-EeecC
Q 021121 237 ----YAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLA-STGWD 302 (317)
Q Consensus 237 ----~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d 302 (317)
..|++|+|+|... .|++++.||++.+||-.... .+...+.|..+|++.+|+.+ |.+++ +.|.|
T Consensus 248 ~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkdar~-kLk~s~~~~qpItcc~fn~~-G~ifaYA~gYD 315 (347)
T KOG0647|consen 248 NDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKDART-KLKTSETHPQPITCCSFNRN-GSIFAYALGYD 315 (347)
T ss_pred CCceEEecceEeecccc-eEEEecCCceEEEecchhhh-hhhccCcCCCccceeEecCC-CCEEEEEeecc
Confidence 3688999999877 69999999999999977655 45677889999999999998 55544 44443
No 73
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.5e-33 Score=214.56 Aligned_cols=251 Identities=24% Similarity=0.394 Sum_probs=211.5
Q ss_pred ceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCC--CEEEEEcCC
Q 021121 51 LTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR--DSFITSSWD 128 (317)
Q Consensus 51 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~d 128 (317)
.+++..+.|...|.++.-. + ..+++|+.||.+++||.. ++....+.+|.++|.+++|..... ..|++++.|
T Consensus 96 P~pl~~~~hdDWVSsv~~~--~-~~IltgsYDg~~riWd~~----Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~D 168 (423)
T KOG0313|consen 96 PKPLQCFLHDDWVSSVKGA--S-KWILTGSYDGTSRIWDLK----GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMD 168 (423)
T ss_pred CCccccccchhhhhhhccc--C-ceEEEeecCCeeEEEecC----CceEEEEecCCcceeeeEEEecCCccceEEEecCC
Confidence 3455666788888888877 2 589999999999999965 367888899999999998854332 269999999
Q ss_pred CEEEEEEcCCCce----eEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCC------------------------
Q 021121 129 DTVKLWTVDRPTS----VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR------------------------ 180 (317)
Q Consensus 129 g~v~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~------------------------ 180 (317)
.++++|..+.++. ++..++|+..|.+++..++ +..+++|+.|..|.+|+..
T Consensus 169 qtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~s-gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~ 247 (423)
T KOG0313|consen 169 QTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSS-GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEG 247 (423)
T ss_pred ceEEEEEecCchhhhhHHhHhcccccceeEEEecCC-CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcc
Confidence 9999999887643 3344589999999999999 8999999999999999932
Q ss_pred -CCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCC
Q 021121 181 -EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDM 259 (317)
Q Consensus 181 -~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 259 (317)
++.++..+.+|..+|.++.|++ ...+.+++.|.+|+.||+.+++. ...+. .+..+.++.++|... +|++|+.|.
T Consensus 248 ~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~-~~~~~-~~ksl~~i~~~~~~~-Ll~~gssdr 322 (423)
T KOG0313|consen 248 GTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGL-KSTLT-TNKSLNCISYSPLSK-LLASGSSDR 322 (423)
T ss_pred cccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccc-eeeee-cCcceeEeecccccc-eeeecCCCC
Confidence 1235566789999999999996 66899999999999999999875 44444 345899999999887 899999999
Q ss_pred eEEEEeccccc--ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121 260 TVCLWDFMVED--ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP 314 (317)
Q Consensus 260 ~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~ 314 (317)
.|++||.+++. .+.+.+.+|...|.++.|+|.+..+|++++.|+++++||++...
T Consensus 323 ~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 323 HIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred ceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 99999998865 55678899999999999999988899999999999999998754
No 74
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=2.9e-33 Score=222.21 Aligned_cols=289 Identities=19% Similarity=0.319 Sum_probs=221.2
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeee--cCCCCeeEEEecCCCCCeEEEEEcCC
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAF--DTADGVYDLAWSESHDSLLIAAVADG 83 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg 83 (317)
+...|.++++.| .+.-+++++- |..|++||++.....++....+ .....|++++|++.++ .|++.+...
T Consensus 166 gtk~Vsal~~Dp--~GaR~~sGs~------Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~-~iLvvsg~a 236 (641)
T KOG0772|consen 166 GTKIVSALAVDP--SGARFVSGSL------DYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD-QILVVSGSA 236 (641)
T ss_pred CceEEEEeeecC--CCceeeeccc------cceEEEEecccccccchhhhccCcccccccceeeecCCCC-eEEEEecCc
Confidence 345788999999 5555555554 8899999998765433333222 2345799999999985 666666677
Q ss_pred eEEEEEeCCCCCCC---------CceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce-eEEee-----cc
Q 021121 84 SVKIYDTALPPTAN---------PIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-VRTFK-----EH 148 (317)
Q Consensus 84 ~i~v~~~~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~-----~~ 148 (317)
..+|+|-+.....+ .+...++|...++|.+|+|..+..+++++.||++++||++..+. ...++ +.
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 89999865431111 12234689999999999999998999999999999999987643 23332 23
Q ss_pred ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc--ee-eeccCcc--ceEEEEecCCCCcEEEEEecCCcEEEEEcc
Q 021121 149 AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS--TM-IIPAHEF--EILACDWNKYDDCLIASASVDKSIKIWDVR 223 (317)
Q Consensus 149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~-~~~~~~~--~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~ 223 (317)
.-+++.++|+|+ +++|++|..||.|.+|+.+.... .. .-..|.. .|+||.|++ ++++|++-+.|+++++||++
T Consensus 317 Rv~~tsC~~nrd-g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~-dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 317 RVPVTSCAWNRD-GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY-DGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred ccCceeeecCCC-cchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc-ccchhhhccCCCceeeeecc
Confidence 447899999999 88899999999999999865422 22 2245665 899999999 99999999999999999999
Q ss_pred CCCccEEEEecC--CCceeEEEecCCCCeeEEeeec------CCeEEEEecccccceeeeeecccceeEeEEEEeccCCe
Q 021121 224 NYRVPIAVLNGH--GYAVRKVKFSPHRRNLLASCSY------DMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGL 295 (317)
Q Consensus 224 ~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~------d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 295 (317)
+.+.++....+- ..+-+.++|||+.+ +|++|.. .|.+.+||..+.+ .+..+.-....|..+.|+|. =+.
T Consensus 395 q~kkpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~d-~v~ki~i~~aSvv~~~Whpk-LNQ 471 (641)
T KOG0772|consen 395 QFKKPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTLD-TVYKIDISTASVVRCLWHPK-LNQ 471 (641)
T ss_pred ccccchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEecccee-eEEEecCCCceEEEEeecch-hhh
Confidence 998887765543 34567899999998 7888763 5789999988877 45666666788999999998 566
Q ss_pred EEEeecCCcEEEE
Q 021121 296 LASTGWDELVYVW 308 (317)
Q Consensus 296 l~s~~~dg~i~~w 308 (317)
|..|+.||.+++|
T Consensus 472 i~~gsgdG~~~vy 484 (641)
T KOG0772|consen 472 IFAGSGDGTAHVY 484 (641)
T ss_pred eeeecCCCceEEE
Confidence 7777778988875
No 75
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.1e-33 Score=216.07 Aligned_cols=298 Identities=20% Similarity=0.261 Sum_probs=226.6
Q ss_pred EEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCC------CCCeEEEEEcCCeE
Q 021121 12 SVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSES------HDSLLIAAVADGSV 85 (317)
Q Consensus 12 ~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~l~~~~~dg~i 85 (317)
.+..-|. ++.++++-.+. ....+.+|=.+...+.+..-.-+-.+....|++|... -.+++|.|+.+..|
T Consensus 130 e~~V~ps-DnlIl~ar~ed----dvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~I 204 (463)
T KOG0270|consen 130 EEQVKPS-DNLILCARNED----DVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEI 204 (463)
T ss_pred cceeccC-CcEEEEeeccC----CceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCcee
Confidence 3445564 55666665431 0234444444443322222222223445577787532 12699999999999
Q ss_pred EEEEeCCCCCCCCcee------------------eccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeec
Q 021121 86 KIYDTALPPTANPIRS------------------LHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKE 147 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~~------------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 147 (317)
.|||+.-.....+... ..+|+..|..+.|+..-++.|++|+.|.+|++||+.++++...+..
T Consensus 205 eIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~ 284 (463)
T KOG0270|consen 205 EIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITH 284 (463)
T ss_pred EEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhh
Confidence 9999875422222221 2368889999999988888999999999999999999999999999
Q ss_pred cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCc
Q 021121 148 HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV 227 (317)
Q Consensus 148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 227 (317)
|.+.|.++.|+|..+..+++|+.|++|.+.|.|........-...+.|-.++|.|.....++++..||+++-+|+|+...
T Consensus 285 ~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~ 364 (463)
T KOG0270|consen 285 HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK 364 (463)
T ss_pred cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCC
Confidence 99999999999999999999999999999999964333333335678999999998899999999999999999999988
Q ss_pred cEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccce-eeeeecccceeEeEEEEeccCCeEEEeecCCcEE
Q 021121 228 PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL-VGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVY 306 (317)
Q Consensus 228 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~ 306 (317)
++..+..|..+|.++++++.-++++++++.|+.+++|++...... +....-.-+...++++.|+-...++.||..+.++
T Consensus 365 ~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~ 444 (463)
T KOG0270|consen 365 PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLR 444 (463)
T ss_pred ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEE
Confidence 999999999999999999999999999999999999998765521 1111111123567777887666899999999999
Q ss_pred EEecCCCC
Q 021121 307 VWQQGMDP 314 (317)
Q Consensus 307 ~w~~~~~~ 314 (317)
|||+....
T Consensus 445 vwd~~~~~ 452 (463)
T KOG0270|consen 445 VWDIFTNS 452 (463)
T ss_pred EeecccCh
Confidence 99997653
No 76
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.5e-32 Score=209.31 Aligned_cols=249 Identities=14% Similarity=0.215 Sum_probs=211.8
Q ss_pred eeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEE
Q 021121 54 LVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKL 133 (317)
Q Consensus 54 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i 133 (317)
.....|...|.+++.+|+. +++++|+.|..-.+|++.++ .....+.+|+..|+++.|+.+|. +|++|+.+|.|+|
T Consensus 58 ~tF~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~g---e~~~eltgHKDSVt~~~Fshdgt-lLATGdmsG~v~v 132 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDISTG---EFAGELTGHKDSVTCCSFSHDGT-LLATGDMSGKVLV 132 (399)
T ss_pred eehhhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccCC---cceeEecCCCCceEEEEEccCce-EEEecCCCccEEE
Confidence 3344799999999999965 79999999999999999887 67788899999999999999998 9999999999999
Q ss_pred EEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEec
Q 021121 134 WTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASV 213 (317)
Q Consensus 134 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~ 213 (317)
|...++.....+...-..+.=+.|+|. ..+|++|+.||.+.+|.+.++...+.+.+|..++++=.|.| +|+.++++..
T Consensus 133 ~~~stg~~~~~~~~e~~dieWl~WHp~-a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~ 210 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQEVEDIEWLKWHPR-AHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIP-DGKRILTGYD 210 (399)
T ss_pred EEcccCceEEEeecccCceEEEEeccc-ccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccC-CCceEEEEec
Confidence 999999888888766677888999997 99999999999999999999888889999999999999999 8999999999
Q ss_pred CCcEEEEEccCCCccEEEEe---------------------------------------------------cCCCceeEE
Q 021121 214 DKSIKIWDVRNYRVPIAVLN---------------------------------------------------GHGYAVRKV 242 (317)
Q Consensus 214 d~~i~v~d~~~~~~~~~~~~---------------------------------------------------~~~~~v~~~ 242 (317)
||+|++||..+... +..+. .+...+.++
T Consensus 211 dgti~~Wn~ktg~p-~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esv 289 (399)
T KOG0296|consen 211 DGTIIVWNPKTGQP-LHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESV 289 (399)
T ss_pred CceEEEEecCCCce-eEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhh
Confidence 99999999987653 33222 011112223
Q ss_pred E---ecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCCC
Q 021121 243 K---FSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPR 315 (317)
Q Consensus 243 ~---~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~ 315 (317)
. ++..-+ +.|+|+-||+|.|||+.... ++..-.|+.+|+.+.|.+ ..+|++++.+|.|+.||.++++.
T Consensus 290 e~~~~ss~lp-L~A~G~vdG~i~iyD~a~~~--~R~~c~he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l 360 (399)
T KOG0296|consen 290 ESIPSSSKLP-LAACGSVDGTIAIYDLAAST--LRHICEHEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQL 360 (399)
T ss_pred hhcccccccc-hhhcccccceEEEEecccch--hheeccCCCceEEEEEcC--cchheeeccCceEEeeeccccce
Confidence 3 333334 78899999999999998764 456677889999999998 47899999999999999988754
No 77
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=9.9e-32 Score=227.59 Aligned_cols=227 Identities=17% Similarity=0.277 Sum_probs=178.9
Q ss_pred EEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc--------eeEEeecccc
Q 021121 79 AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT--------SVRTFKEHAY 150 (317)
Q Consensus 79 ~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--------~~~~~~~~~~ 150 (317)
|+.++.|++|+.... ..+..+.+|.+.|.+++|+|+...+|++|+.||.|++||+.++. .+..+.+|..
T Consensus 50 GG~~gvI~L~~~~r~---~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRK---PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCC---ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 566789999997654 56778899999999999999854499999999999999997642 3346778999
Q ss_pred ceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEE
Q 021121 151 CVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIA 230 (317)
Q Consensus 151 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 230 (317)
.|.+++|+|++..++++++.|+.|++||+++++....+. +...|.+++|+| ++.+|++++.|+.|++||+++++. +.
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~-i~ 203 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEI-AS 203 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcE-EE
Confidence 999999999855667899999999999999988777665 567899999999 999999999999999999998764 67
Q ss_pred EEecCCCceeE-----EEecCCCCeeEEeeecCC----eEEEEecccccceeeeeec--ccceeEeEEEEeccCCeEEEe
Q 021121 231 VLNGHGYAVRK-----VKFSPHRRNLLASCSYDM----TVCLWDFMVEDALVGRYDH--HTEFAVGVDMSVLVEGLLAST 299 (317)
Q Consensus 231 ~~~~~~~~v~~-----~~~~~~~~~~l~~~~~d~----~i~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~ 299 (317)
.+.+|.+.+.. ..|++++. +|++++.|+ .|+|||+++...++..... +.+.+. -.+.++.+.++++|
T Consensus 204 tl~gH~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~-p~~D~~tg~l~lsG 281 (568)
T PTZ00420 204 SFHIHDGGKNTKNIWIDGLGGDDN-YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLI-PHYDESTGLIYLIG 281 (568)
T ss_pred EEecccCCceeEEEEeeeEcCCCC-EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceE-EeeeCCCCCEEEEE
Confidence 78888876533 23457877 577766664 7999999965444444332 223222 23445447789999
Q ss_pred ecCCcEEEEecCCC
Q 021121 300 GWDELVYVWQQGMD 313 (317)
Q Consensus 300 ~~dg~i~~w~~~~~ 313 (317)
+.|+.|++|++..+
T Consensus 282 kGD~tIr~~e~~~~ 295 (568)
T PTZ00420 282 KGDGNCRYYQHSLG 295 (568)
T ss_pred ECCCeEEEEEccCC
Confidence 99999999999654
No 78
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=5.4e-32 Score=210.68 Aligned_cols=281 Identities=17% Similarity=0.305 Sum_probs=230.4
Q ss_pred ceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEE
Q 021121 9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIY 88 (317)
Q Consensus 9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~ 88 (317)
.+.++...| ...+..+++. |..+.++|...... +.. ..+|...|+.+.|+|+. ..+++++.|..|+||
T Consensus 221 gi~ald~~~--s~~~ilTGG~------d~~av~~d~~s~q~-l~~--~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vw 288 (506)
T KOG0289|consen 221 GITALDIIP--SSSKILTGGE------DKTAVLFDKPSNQI-LAT--LKGHTKKITSVKFHKDL-DTVITASADEIIRVW 288 (506)
T ss_pred CeeEEeecC--CCCcceecCC------CCceEEEecchhhh-hhh--ccCcceEEEEEEeccch-hheeecCCcceEEee
Confidence 456677777 3334444443 88999999887651 222 23788899999999997 589999999999999
Q ss_pred EeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecc--ccceEEEEEecCCCCeEE
Q 021121 89 DTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEH--AYCVYNATWNPRHSDVFC 166 (317)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~ 166 (317)
..... ........|.++|+.+..+|.|. ||++++.||+..+.|++++..+...... .-.+++.+|+|| +.+|.
T Consensus 289 s~~~~---s~~~~~~~h~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpD-gLifg 363 (506)
T KOG0289|consen 289 SVPLS---SEPTSSRPHEEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPD-GLIFG 363 (506)
T ss_pred ccccc---cCccccccccccceeeeeccCCc-EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCC-ceEEe
Confidence 98765 45556778999999999999998 9999999999999999999888776542 245899999999 99999
Q ss_pred EEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe-cCCCceeEEEec
Q 021121 167 SASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN-GHGYAVRKVKFS 245 (317)
Q Consensus 167 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~v~~~~~~ 245 (317)
+|..||.|++||+.++.....+.+|.++|..+.|+. +|.+++++++|+.|++||+|+.+. ..++. .....+.++.|.
T Consensus 364 tgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n-~kt~~l~~~~~v~s~~fD 441 (506)
T KOG0289|consen 364 TGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKN-FKTIQLDEKKEVNSLSFD 441 (506)
T ss_pred ccCCCceEEEEEcCCccccccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEehhhcc-cceeeccccccceeEEEc
Confidence 999999999999999999999999999999999999 999999999999999999998774 33333 334579999999
Q ss_pred CCCCeeEEeeecCCeEEEEeccccc-ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121 246 PHRRNLLASCSYDMTVCLWDFMVED-ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ 310 (317)
Q Consensus 246 ~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~ 310 (317)
+.|. +|+.++.|=.|++++-.+.+ ..+..+..|.+..+++.|... ..+++++|.|..++++.+
T Consensus 442 ~SGt-~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~-aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 442 QSGT-YLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEH-AQYLASTSMDAILRLYAL 505 (506)
T ss_pred CCCC-eEEeecceeEEEEEecccccceeeehhhhcccccceeeeccc-ceEEeeccchhheEEeec
Confidence 9999 57777766666665533332 345667778888999999887 789999999999999865
No 79
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=8.5e-34 Score=219.28 Aligned_cols=280 Identities=19% Similarity=0.271 Sum_probs=229.5
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
|...+..+.|-+. .+.|+.++. |..|++|+.......+.. ...+..++|+.+.|.+++ +.+++++.|+.+
T Consensus 174 h~gev~~v~~l~~-sdtlatgg~-------Dr~Ik~W~v~~~k~~~~~-tLaGs~g~it~~d~d~~~-~~~iAas~d~~~ 243 (459)
T KOG0288|consen 174 HEGEVHDVEFLRN-SDTLATGGS-------DRIIKLWNVLGEKSELIS-TLAGSLGNITSIDFDSDN-KHVIAASNDKNL 243 (459)
T ss_pred cccccceeEEccC-cchhhhcch-------hhhhhhhhcccchhhhhh-hhhccCCCcceeeecCCC-ceEEeecCCCce
Confidence 5678899999993 366666665 889999999876521111 122567789999999998 688888899999
Q ss_pred EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121 86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF 165 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 165 (317)
++|++... ....++.+|...|+++.|..... .+++|+.|.+|+.||+....+.+++. ....+..|..+ ...+
T Consensus 244 r~Wnvd~~---r~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~---~~~~ 315 (459)
T KOG0288|consen 244 RLWNVDSL---RLRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS---ISDV 315 (459)
T ss_pred eeeeccch---hhhhhhcccccceeeehhhcccc-ceeeccccchhhhhhhhhhheecccc-ccccccceEec---ceee
Confidence 99999866 78888999999999999987765 59999999999999999988877765 34557777776 4568
Q ss_pred EEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecC----CCceeE
Q 021121 166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH----GYAVRK 241 (317)
Q Consensus 166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~----~~~v~~ 241 (317)
++|-.|++|++||.++..+....+.+. .|+++..++ ++..+.+++.|.++.+.|+++.+. ...+.+. ....+.
T Consensus 316 ~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI-~~~~sA~g~k~asDwtr 392 (459)
T KOG0288|consen 316 ISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEI-RQTFSAEGFKCASDWTR 392 (459)
T ss_pred eecccccceEEEeccCCceeeEeecCc-ceeeEeecc-CCeEEeeecCCCceeeeecccccE-EEEeeccccccccccce
Confidence 899999999999999999998888665 899999999 999999999999999999998663 4443321 234889
Q ss_pred EEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccc--eeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE--FAVGVDMSVLVEGLLASTGWDELVYVWQ 309 (317)
Q Consensus 242 ~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~i~~w~ 309 (317)
+.|||++. |+++|+.||.|+||++.+++ +...+..... .|++++|+|. +..|++++.++.+.+|.
T Consensus 393 vvfSpd~~-YvaAGS~dgsv~iW~v~tgK-lE~~l~~s~s~~aI~s~~W~~s-G~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 393 VVFSPDGS-YVAAGSADGSVYIWSVFTGK-LEKVLSLSTSNAAITSLSWNPS-GSGLLSADKQKAVTLWT 459 (459)
T ss_pred eEECCCCc-eeeeccCCCcEEEEEccCce-EEEEeccCCCCcceEEEEEcCC-CchhhcccCCcceEecC
Confidence 99999999 79999999999999999987 3344443333 6999999998 88999999999999994
No 80
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-31 Score=198.37 Aligned_cols=245 Identities=20% Similarity=0.326 Sum_probs=205.2
Q ss_pred CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcC--CCEEEEEEc
Q 021121 59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW--DDTVKLWTV 136 (317)
Q Consensus 59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~v~iwd~ 136 (317)
....|+++.|+++|. .+++++.|..+++||...+ +..+++..++-.+..++|..... .++.++. |.+|+..++
T Consensus 13 ~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g---~~~~ti~skkyG~~~~~Fth~~~-~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSG---KQVKTINSKKYGVDLACFTHHSN-TVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred CCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCC---ceeeEeecccccccEEEEecCCc-eEEEccCCCCCceEEEEe
Confidence 467899999999994 8888899999999999877 77778887888889999977665 5666665 889999999
Q ss_pred CCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCc
Q 021121 137 DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKS 216 (317)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~ 216 (317)
.+.+.++.+.+|...|++++.+|- ++.+++++.|++|++||+|..++...+.....+ .++|+| .|-++|++.....
T Consensus 88 ~dNkylRYF~GH~~~V~sL~~sP~-~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp-~GLifA~~~~~~~ 163 (311)
T KOG1446|consen 88 HDNKYLRYFPGHKKRVNSLSVSPK-DDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDP-EGLIFALANGSEL 163 (311)
T ss_pred ecCceEEEcCCCCceEEEEEecCC-CCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECC-CCcEEEEecCCCe
Confidence 999999999999999999999998 689999999999999999988777766544443 578999 9999999988889
Q ss_pred EEEEEccCC-CccEEEEecC---CCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeeccccee---EeEEEE
Q 021121 217 IKIWDVRNY-RVPIAVLNGH---GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFA---VGVDMS 289 (317)
Q Consensus 217 i~v~d~~~~-~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v---~~~~~~ 289 (317)
|++||+|+. +.|...+... ....+.+.|+|+|+. |+.+...+.+.+.|.-++. +...+..+...- ...+|+
T Consensus 164 IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~-iLlsT~~s~~~~lDAf~G~-~~~tfs~~~~~~~~~~~a~ft 241 (311)
T KOG1446|consen 164 IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS-ILLSTNASFIYLLDAFDGT-VKSTFSGYPNAGNLPLSATFT 241 (311)
T ss_pred EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE-EEEEeCCCcEEEEEccCCc-EeeeEeeccCCCCcceeEEEC
Confidence 999999986 4455555433 567899999999995 5566778899999998887 556666654432 577899
Q ss_pred eccCCeEEEeecCCcEEEEecCCCCC
Q 021121 290 VLVEGLLASTGWDELVYVWQQGMDPR 315 (317)
Q Consensus 290 ~~~~~~l~s~~~dg~i~~w~~~~~~~ 315 (317)
|+ ++++++|+.||+|.+|+++++.+
T Consensus 242 Pd-s~Fvl~gs~dg~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 242 PD-SKFVLSGSDDGTIHVWNLETGKK 266 (311)
T ss_pred CC-CcEEEEecCCCcEEEEEcCCCcE
Confidence 99 89999999999999999987654
No 81
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-30 Score=195.58 Aligned_cols=281 Identities=18% Similarity=0.268 Sum_probs=223.3
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEc--CC
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVA--DG 83 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg 83 (317)
....|.++.|++ ++.+++++++ |..++|||...+.. ...+. .++-++..++|.... +.++.++. |.
T Consensus 13 ~~~~i~sl~fs~--~G~~litss~------dDsl~LYd~~~g~~-~~ti~--skkyG~~~~~Fth~~-~~~i~sStk~d~ 80 (311)
T KOG1446|consen 13 TNGKINSLDFSD--DGLLLITSSE------DDSLRLYDSLSGKQ-VKTIN--SKKYGVDLACFTHHS-NTVIHSSTKEDD 80 (311)
T ss_pred CCCceeEEEecC--CCCEEEEecC------CCeEEEEEcCCCce-eeEee--cccccccEEEEecCC-ceEEEccCCCCC
Confidence 467899999999 6777777665 78999999988752 22222 455678888888765 45666665 78
Q ss_pred eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCC
Q 021121 84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSD 163 (317)
Q Consensus 84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 163 (317)
+|+..++... +.++.+.+|...|++++.+|-+. .+++++.|++|++||++..++...+.... -...+|.|. +-
T Consensus 81 tIryLsl~dN---kylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~AfDp~-GL 153 (311)
T KOG1446|consen 81 TIRYLSLHDN---KYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAFDPE-GL 153 (311)
T ss_pred ceEEEEeecC---ceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEecCC--CcceeECCC-Cc
Confidence 9999999877 89999999999999999999986 99999999999999999888777665333 345689998 88
Q ss_pred eEEEEeCCCeEEEEeCCCC--Cceeeec---cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCc
Q 021121 164 VFCSASGDCTLRIWDVREM--GSTMIIP---AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYA 238 (317)
Q Consensus 164 ~l~~~~~dg~i~i~d~~~~--~~~~~~~---~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 238 (317)
++|++.....|++||+|.. .+...+. ......+.+.|+| +|+.++.++..+.+++.|.-.+.. ...+..+...
T Consensus 154 ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~-~~tfs~~~~~ 231 (311)
T KOG1446|consen 154 IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTV-KSTFSGYPNA 231 (311)
T ss_pred EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcE-eeeEeeccCC
Confidence 9999888889999999975 3444443 3356789999999 999999999999999999998873 5666555432
Q ss_pred e---eEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeec-ccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121 239 V---RKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH-HTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 239 v---~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
- -..+|+|+++ ++++|+.||+|.+|+++++..+ ..+.+ +.+++.++.|+|. -.+++++ +..+.+|=...
T Consensus 232 ~~~~~~a~ftPds~-Fvl~gs~dg~i~vw~~~tg~~v-~~~~~~~~~~~~~~~fnP~-~~mf~sa--~s~l~fw~p~~ 304 (311)
T KOG1446|consen 232 GNLPLSATFTPDSK-FVLSGSDDGTIHVWNLETGKKV-AVLRGPNGGPVSCVRFNPR-YAMFVSA--SSNLVFWLPDE 304 (311)
T ss_pred CCcceeEEECCCCc-EEEEecCCCcEEEEEcCCCcEe-eEecCCCCCCccccccCCc-eeeeeec--CceEEEEeccc
Confidence 2 5788999999 7999999999999999999854 45555 7899999999996 4456655 46677776553
No 82
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.2e-31 Score=198.83 Aligned_cols=269 Identities=20% Similarity=0.310 Sum_probs=214.3
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
..+.|.++.|+|. .+.++++. +||.+++||..... ....+.|..++.+++|.++ ..+++|+.||.|
T Consensus 12 P~d~IS~v~f~~~-~~~LLvss-------WDgslrlYdv~~~~----l~~~~~~~~plL~c~F~d~--~~~~~G~~dg~v 77 (323)
T KOG1036|consen 12 PEDGISSVKFSPS-SSDLLVSS-------WDGSLRLYDVPANS----LKLKFKHGAPLLDCAFADE--STIVTGGLDGQV 77 (323)
T ss_pred ChhceeeEEEcCc-CCcEEEEe-------ccCcEEEEeccchh----hhhheecCCceeeeeccCC--ceEEEeccCceE
Confidence 3577999999985 55566655 39999999998764 3444578999999999985 589999999999
Q ss_pred EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121 86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF 165 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 165 (317)
+.+|+..+ ....+..|..+|.|+.+++... .+++|+.|++|++||.+.......+.. ...|.++... ++.|
T Consensus 78 r~~Dln~~----~~~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~---g~~L 148 (323)
T KOG1036|consen 78 RRYDLNTG----NEDQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS---GNRL 148 (323)
T ss_pred EEEEecCC----cceeeccCCCceEEEEeeccCC-eEEEcccCccEEEEecccccccccccc-CceEEEEecc---CCEE
Confidence 99999875 3445667999999999998766 899999999999999987655555553 4478998876 7789
Q ss_pred EEEeCCCeEEEEeCCCCCceeeec--cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCC---ccEEEEecCC----
Q 021121 166 CSASGDCTLRIWDVREMGSTMIIP--AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR---VPIAVLNGHG---- 236 (317)
Q Consensus 166 ~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~~~~~---- 236 (317)
++|+.+..+.+||+++.....+.. ..+-.++|++.-| ++.-+++++-||.|.+=.+.... .....++.|.
T Consensus 149 vVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~ 227 (323)
T KOG1036|consen 149 VVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEK 227 (323)
T ss_pred EEeecCceEEEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccC
Confidence 999999999999999886654332 3445789999999 88888889999998876655431 1233455553
Q ss_pred -----CceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeec
Q 021121 237 -----YAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGW 301 (317)
Q Consensus 237 -----~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 301 (317)
.+|++|+|+|-.. .|+||+.||.|.+||+.+.+.+ ..+......|..++|+.+ +..||.++.
T Consensus 228 ~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~~~rKrl-~q~~~~~~SI~slsfs~d-G~~LAia~s 294 (323)
T KOG1036|consen 228 DTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDLFNRKRL-KQLAKYETSISSLSFSMD-GSLLAIASS 294 (323)
T ss_pred CceEEEEeceeEeccccc-eEEecCCCceEEEccCcchhhh-hhccCCCCceEEEEeccC-CCeEEEEec
Confidence 3899999999877 6999999999999999988744 555555677999999999 788888773
No 83
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=5e-32 Score=197.82 Aligned_cols=247 Identities=19% Similarity=0.267 Sum_probs=213.4
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD 137 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 137 (317)
.|...+.+++|+-+| ..|++|+.|+++.+|+++.. .........+|.+.|-.++|.|..+..+++++.|..|++||++
T Consensus 18 ~~~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDG-TKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR 95 (313)
T ss_pred hhhhcceEEEEcccC-ceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence 677889999999998 69999999999999999865 2233345678999999999999988899999999999999999
Q ss_pred CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcE
Q 021121 138 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSI 217 (317)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i 217 (317)
.+++........+ -.-+.|+|+ +.++++++.|..|.+.|.++.+.....+ ....+..+.|+. ++++++.....|.|
T Consensus 96 ~~k~~~~i~~~~e-ni~i~wsp~-g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~-~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 96 SGKCTARIETKGE-NINITWSPD-GEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNN-SNDLFFLTNGLGCV 171 (313)
T ss_pred cCcEEEEeeccCc-ceEEEEcCC-CCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecC-CCCEEEEecCCceE
Confidence 9999988874444 456789999 8899999999999999999877666554 456688899996 78888777778999
Q ss_pred EEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEE
Q 021121 218 KIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLA 297 (317)
Q Consensus 218 ~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 297 (317)
.|......+ ++..+.+|.....|+.|+|+|+ ++|+|+.|-.+.+||+...- +.+.+..+.-+|+.++|+.+ +++||
T Consensus 172 ~ILsypsLk-pv~si~AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~ELi-C~R~isRldwpVRTlSFS~d-g~~lA 247 (313)
T KOG1407|consen 172 EILSYPSLK-PVQSIKAHPSNCICIEFDPDGR-YFATGSADALVSLWDVDELI-CERCISRLDWPVRTLSFSHD-GRMLA 247 (313)
T ss_pred EEEeccccc-cccccccCCcceEEEEECCCCc-eEeeccccceeeccChhHhh-hheeeccccCceEEEEeccC-cceee
Confidence 999999766 6999999999999999999999 69999999999999998764 56778888899999999999 89999
Q ss_pred EeecCCcEEEEecCCCC
Q 021121 298 STGWDELVYVWQQGMDP 314 (317)
Q Consensus 298 s~~~dg~i~~w~~~~~~ 314 (317)
+++.|..|-|=++.++.
T Consensus 248 SaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGD 264 (313)
T ss_pred ccCccceEEeEecccCC
Confidence 99999998776666554
No 84
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-31 Score=220.82 Aligned_cols=288 Identities=20% Similarity=0.308 Sum_probs=238.9
Q ss_pred ceecCcceeEEEEecCCCCe-EEEEEecccccccCceEEEEecCCCCCc------ceeeeeecCCCCeeEEEecCCCCCe
Q 021121 3 VFKTPFNGYSVKFSPFYESR-LAVATAQNFGILGNGRVHVLDLSPAAPA------LTELVAFDTADGVYDLAWSESHDSL 75 (317)
Q Consensus 3 ~~~~~~~v~~~~~~p~~~~~-~~~~~~~~~~~~~~g~i~i~~~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~ 75 (317)
++.....+.+++|-|.+... .++... +..+..|.++..... ...+...+|...|++++++.+. ..
T Consensus 316 ~ir~~~kiks~dv~~~~~~~~~lv~l~-------nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~-~~ 387 (888)
T KOG0306|consen 316 TIRTSAKIKSFDVTPSGGTENTLVLLA-------NNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS-IL 387 (888)
T ss_pred heechhheeEEEEEecCCcceeEEEee-------cCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc-ee
Confidence 35567788899999965443 333333 668999998763211 2234455899999999999875 35
Q ss_pred EEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEE
Q 021121 76 LIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNA 155 (317)
Q Consensus 76 l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~ 155 (317)
+++| ..+.+++|+.++. ++++++.. +.+.+..|-|.++ ++++|...|.+.+||+.+...+...++|.+.++++
T Consensus 388 ~~Sg-a~~SikiWn~~t~---kciRTi~~--~y~l~~~Fvpgd~-~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi 460 (888)
T KOG0306|consen 388 LASG-AGESIKIWNRDTL---KCIRTITC--GYILASKFVPGDR-YIVLGTKNGELQVFDLASASLVETIRAHDGAIWSI 460 (888)
T ss_pred eeec-CCCcEEEEEccCc---ceeEEecc--ccEEEEEecCCCc-eEEEeccCCceEEEEeehhhhhhhhhccccceeee
Confidence 5554 5678999998866 77777764 4888999999887 99999999999999999999999999999999999
Q ss_pred EEecCCCCeEEEEeCCCeEEEEeCCCC-----Cce--------eeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEc
Q 021121 156 TWNPRHSDVFCSASGDCTLRIWDVREM-----GST--------MIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDV 222 (317)
Q Consensus 156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~--------~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~ 222 (317)
+.+|+ +..+++|+.|.+|++||..-. ... +++ ..+..|.|+.+|| ++++|+++--|.+++||-+
T Consensus 461 ~~~pD-~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyfl 537 (888)
T KOG0306|consen 461 SLSPD-NKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFL 537 (888)
T ss_pred eecCC-CCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcC-CCcEEEEEeccCeEEEEEe
Confidence 99999 888999999999999997521 111 112 2456799999999 9999999999999999999
Q ss_pred cCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecC
Q 021121 223 RNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWD 302 (317)
Q Consensus 223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 302 (317)
.+.+. ...+-+|.-||.|+..+|+++ +++|||.|.+|++|-+.-+. +...+.+|...|.++.|.|. ..++.++|.|
T Consensus 538 DtlKF-flsLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdFGD-CHKS~fAHdDSvm~V~F~P~-~~~FFt~gKD 613 (888)
T KOG0306|consen 538 DTLKF-FLSLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDFGD-CHKSFFAHDDSVMSVQFLPK-THLFFTCGKD 613 (888)
T ss_pred cceee-eeeecccccceeEEeccCCcC-eEEeccCCCceEEeccccch-hhhhhhcccCceeEEEEccc-ceeEEEecCc
Confidence 98774 667889999999999999999 89999999999999998887 67889999999999999997 8899999999
Q ss_pred CcEEEEecCC
Q 021121 303 ELVYVWQQGM 312 (317)
Q Consensus 303 g~i~~w~~~~ 312 (317)
+.|+-||-..
T Consensus 614 ~kvKqWDg~k 623 (888)
T KOG0306|consen 614 GKVKQWDGEK 623 (888)
T ss_pred ceEEeechhh
Confidence 9999998643
No 85
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.9e-32 Score=211.44 Aligned_cols=287 Identities=21% Similarity=0.282 Sum_probs=230.1
Q ss_pred ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCc-------------ceeeee--ecCCCCeeEEEec
Q 021121 5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPA-------------LTELVA--FDTADGVYDLAWS 69 (317)
Q Consensus 5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~-------------~~~~~~--~~~~~~v~~~~~~ 69 (317)
.|..++.+++++| ++.+..+.+. +|.|.=|+...+... ..+... ..|...+.+++.+
T Consensus 140 ~H~~s~~~vals~--d~~~~fsask------~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS 211 (479)
T KOG0299|consen 140 KHQLSVTSVALSP--DDKRVFSASK------DGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVS 211 (479)
T ss_pred cccCcceEEEeec--cccceeecCC------CcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEc
Confidence 3778999999999 5666666665 889999988655421 001111 2577889999999
Q ss_pred CCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccc
Q 021121 70 ESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHA 149 (317)
Q Consensus 70 ~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 149 (317)
+|+ ++|++|+.|..|.||+.++. +.+..+.+|.+.|.+++|-.... .+++++.|+.|++|+++....+.++.+|.
T Consensus 212 ~Dg-kylatgg~d~~v~Iw~~~t~---ehv~~~~ghr~~V~~L~fr~gt~-~lys~s~Drsvkvw~~~~~s~vetlyGHq 286 (479)
T KOG0299|consen 212 SDG-KYLATGGRDRHVQIWDCDTL---EHVKVFKGHRGAVSSLAFRKGTS-ELYSASADRSVKVWSIDQLSYVETLYGHQ 286 (479)
T ss_pred CCC-cEEEecCCCceEEEecCccc---chhhcccccccceeeeeeecCcc-ceeeeecCCceEEEehhHhHHHHHHhCCc
Confidence 998 69999999999999999877 78888999999999999986554 89999999999999999999999999999
Q ss_pred cceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccE
Q 021121 150 YCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPI 229 (317)
Q Consensus 150 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 229 (317)
+.|.++.-... ...+.+|+.|+++++|++.. +....+.++...+-|++|- +...+++|+.+|.|.+|++.+.+. +
T Consensus 287 d~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~KKkp-l 361 (479)
T KOG0299|consen 287 DGVLGIDALSR-ERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIALWSLLKKKP-L 361 (479)
T ss_pred cceeeechhcc-cceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEe--cccceeeccCCceEEEeeecccCc-e
Confidence 99999998876 77777788999999999943 4445667788899999998 567899999999999999988653 4
Q ss_pred EE-EecC-----------CCceeEEEecCCCCeeEEeeecCCeEEEEeccccc---ceeeeeecccceeEeEEEEeccCC
Q 021121 230 AV-LNGH-----------GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED---ALVGRYDHHTEFAVGVDMSVLVEG 294 (317)
Q Consensus 230 ~~-~~~~-----------~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~ 294 (317)
.. -.+| +.+|++++..|... ++++|+.+|.|++|.+..+- .++..+. -.+.|++++|++++..
T Consensus 362 f~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ 439 (479)
T KOG0299|consen 362 FTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKR 439 (479)
T ss_pred eEeeccccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCE
Confidence 33 2233 23899999999887 89999999999999998874 3333333 5688999999999443
Q ss_pred eEEEeecCCcEEEEecC
Q 021121 295 LLASTGWDELVYVWQQG 311 (317)
Q Consensus 295 ~l~s~~~dg~i~~w~~~ 311 (317)
+++..|....+--|-..
T Consensus 440 ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 440 IVAGIGKEHRLGRWWCL 456 (479)
T ss_pred EEEecccccccceeeEe
Confidence 66666666666555543
No 86
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-31 Score=199.42 Aligned_cols=270 Identities=18% Similarity=0.275 Sum_probs=213.5
Q ss_pred eEEEEEecccccccCceEEEEecCCCC--------Ccceeeee-ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCC
Q 021121 22 RLAVATAQNFGILGNGRVHVLDLSPAA--------PALTELVA-FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTAL 92 (317)
Q Consensus 22 ~~~~~~~~~~~~~~~g~i~i~~~~~~~--------~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~ 92 (317)
+++++++ ...|.=+++.... +.+.++.. ..|...|++++.+ + .++++|+.|.+|+|||+..
T Consensus 3 ~iIvGtY-------E~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~-~~~aSGssDetI~IYDm~k 72 (362)
T KOG0294|consen 3 EIIVGTY-------EHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--G-PYVASGSSDETIHIYDMRK 72 (362)
T ss_pred eEEEeee-------eeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--c-eeEeccCCCCcEEEEeccc
Confidence 5667766 3466666665433 11222222 2688999999987 4 5999999999999999987
Q ss_pred CCCCCCceeeccCCcceEEEEEecCC-CCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCC
Q 021121 93 PPTANPIRSLHEHTREVHSADYNPTR-RDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGD 171 (317)
Q Consensus 93 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 171 (317)
. ..+..+-.|.+.|+++.|.+.. ...|++|+.||.|.+|+...-..+..+++|.+.|+.++.+|. +++.++.+.|
T Consensus 73 ~---~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS-~KLALsVg~D 148 (362)
T KOG0294|consen 73 R---KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPS-GKLALSVGGD 148 (362)
T ss_pred h---hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCC-CceEEEEcCC
Confidence 6 6777788899999999998764 237999999999999999999999999999999999999999 8999999999
Q ss_pred CeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCee
Q 021121 172 CTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNL 251 (317)
Q Consensus 172 g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 251 (317)
+.++.||+-+++.-...+ .......+.|+| .|.+++.+..+ .|-+|.+.+... ...+. ....+.++.|...+ .
T Consensus 149 ~~lr~WNLV~Gr~a~v~~-L~~~at~v~w~~-~Gd~F~v~~~~-~i~i~q~d~A~v-~~~i~-~~~r~l~~~~l~~~--~ 221 (362)
T KOG0294|consen 149 QVLRTWNLVRGRVAFVLN-LKNKATLVSWSP-QGDHFVVSGRN-KIDIYQLDNASV-FREIE-NPKRILCATFLDGS--E 221 (362)
T ss_pred ceeeeehhhcCccceeec-cCCcceeeEEcC-CCCEEEEEecc-EEEEEecccHhH-hhhhh-ccccceeeeecCCc--e
Confidence 999999999887665554 233345699999 88888887755 588999887543 22222 23456677776544 5
Q ss_pred EEeeecCCeEEEEecccccceeeeeecccceeEeEEEEec-cCCeEEEeecCCcEEEEecCCC
Q 021121 252 LASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVL-VEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 252 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
|++|+.|+.|.+||..+.. +...+.+|...|.++.+-.+ .+.+|+|+|.||.|+|||++.+
T Consensus 222 L~vG~d~~~i~~~D~ds~~-~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 222 LLVGGDNEWISLKDTDSDT-PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEEecCCceEEEeccCCCc-cceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 8899999999999998854 67889999999999985432 2569999999999999999886
No 87
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.5e-33 Score=203.57 Aligned_cols=243 Identities=19% Similarity=0.271 Sum_probs=207.4
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
|...|.+...+. +...+++... |=+-++||.-++. .+..+.|+.-|.+++|+.|. ++|++|+.+..+
T Consensus 58 hkgavw~~~l~~--na~~aasaaa------dftakvw~a~tgd----elhsf~hkhivk~~af~~ds-~~lltgg~ekll 124 (334)
T KOG0278|consen 58 HKGAVWSATLNK--NATRAASAAA------DFTAKVWDAVTGD----ELHSFEHKHIVKAVAFSQDS-NYLLTGGQEKLL 124 (334)
T ss_pred cCcceeeeecCc--hhhhhhhhcc------cchhhhhhhhhhh----hhhhhhhhheeeeEEecccc-hhhhccchHHHh
Confidence 677888888877 4555555554 6678899988765 46677899999999999997 699999999999
Q ss_pred EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121 86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF 165 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 165 (317)
+|||++.+ ..+...+.+|.+.|..+.|....+ .+++++.|++|++||.++++.++.+. .+.+|+++..+++ +.++
T Consensus 125 rvfdln~p--~App~E~~ghtg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~d-G~il 199 (334)
T KOG0278|consen 125 RVFDLNRP--KAPPKEISGHTGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQD-GRIL 199 (334)
T ss_pred hhhhccCC--CCCchhhcCCCCcceeEEEeccCc-eEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccC-CCEE
Confidence 99999865 356667889999999999988777 88888999999999999999999987 6778999999998 7766
Q ss_pred EEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEec
Q 021121 166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFS 245 (317)
Q Consensus 166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~ 245 (317)
+....+.|.+||..+...++.++ ....|.+...+| +...+++|++|..++.||..++.......++|.++|.|+.|+
T Consensus 200 -Tia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFS 276 (334)
T KOG0278|consen 200 -TIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFS 276 (334)
T ss_pred -EEecCceeEEeccccccceeecc-CccccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEEC
Confidence 55567889999999988888876 455688999999 779999999999999999999886333358999999999999
Q ss_pred CCCCeeEEeeecCCeEEEEeccccc
Q 021121 246 PHRRNLLASCSYDMTVCLWDFMVED 270 (317)
Q Consensus 246 ~~~~~~l~~~~~d~~i~vwd~~~~~ 270 (317)
|+|. +.++|+.||+|++|.+..++
T Consensus 277 PdGE-~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 277 PDGE-LYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred CCCc-eeeccCCCceEEEEEecCCC
Confidence 9999 79999999999999987655
No 88
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=100.00 E-value=2.3e-32 Score=216.66 Aligned_cols=289 Identities=16% Similarity=0.196 Sum_probs=241.7
Q ss_pred CceecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCC--cceeeeeecCCCCeeEEEecCCCCCeEEEE
Q 021121 2 PVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAP--ALTELVAFDTADGVYDLAWSESHDSLLIAA 79 (317)
Q Consensus 2 ~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 79 (317)
-++.|..-|.++..|. ..+.+.+++ .|.|+|||+..... ....+..+...+-|+++...||| +.|++|
T Consensus 414 ~tL~HGEvVcAvtIS~--~trhVyTgG-------kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdg-rtLivG 483 (705)
T KOG0639|consen 414 NTLAHGEVVCAVTISN--PTRHVYTGG-------KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDG-RTLIVG 483 (705)
T ss_pred hhhccCcEEEEEEecC--CcceeEecC-------CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCC-ceEEec
Confidence 3567888888999998 678888887 78999999976542 23344444566789999999999 588888
Q ss_pred EcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEec
Q 021121 80 VADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP 159 (317)
Q Consensus 80 ~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 159 (317)
+.-.++.|||+..+ .......+........+++.+||.+ ..+++..||.|.|||+.+...++.+++|.+.+.||..++
T Consensus 484 GeastlsiWDLAap-TprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~ 561 (705)
T KOG0639|consen 484 GEASTLSIWDLAAP-TPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK 561 (705)
T ss_pred cccceeeeeeccCC-CcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC
Confidence 88999999999875 2222333444456778899999998 889999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCce
Q 021121 160 RHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAV 239 (317)
Q Consensus 160 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v 239 (317)
+ +..|.+|+-|.+|+-||++++..+.... ..+.|.++.++| .+.+++.|-+++.+.+......+ ...+.-|.+.|
T Consensus 562 d-GtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP-~~dWlavGMens~vevlh~skp~--kyqlhlheScV 636 (705)
T KOG0639|consen 562 D-GTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSKPE--KYQLHLHESCV 636 (705)
T ss_pred C-CceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCC-CccceeeecccCcEEEEecCCcc--ceeecccccEE
Confidence 9 8889999999999999999988776654 567899999999 99999999999999998877654 45666799999
Q ss_pred eEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121 240 RKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG 311 (317)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~ 311 (317)
.++.|.+.|+ ++++.+.|+.+..|...-+..+.+.. ..+.|.++.++.+ +++++||+.|....+|.+.
T Consensus 637 LSlKFa~cGk-wfvStGkDnlLnawrtPyGasiFqsk--E~SsVlsCDIS~d-dkyIVTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 637 LSLKFAYCGK-WFVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDISFD-DKYIVTGSGDKKATVYEVI 704 (705)
T ss_pred EEEEecccCc-eeeecCchhhhhhccCccccceeecc--ccCcceeeeeccC-ceEEEecCCCcceEEEEEe
Confidence 9999999999 79999999999999988876554333 3567999999998 8999999999999998763
No 89
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.7e-31 Score=209.31 Aligned_cols=250 Identities=20% Similarity=0.350 Sum_probs=215.8
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCC--------------CCceee-ccCCcceEEEEEecCCCCEE
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTA--------------NPIRSL-HEHTREVHSADYNPTRRDSF 122 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~--------------~~~~~~-~~~~~~v~~~~~~~~~~~~l 122 (317)
.|.-++.+++++|++ .+.++++.+|+|.-|++.++... .+...- ..|...+.+++.++|++ +|
T Consensus 140 ~H~~s~~~vals~d~-~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-yl 217 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDD-KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-YL 217 (479)
T ss_pred cccCcceEEEeeccc-cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc-EE
Confidence 688899999999997 69999999999999998876422 111111 37889999999999999 99
Q ss_pred EEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecC
Q 021121 123 ITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNK 202 (317)
Q Consensus 123 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 202 (317)
++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.. .+.+++++.|..+++|+++....+.++.+|...|..+....
T Consensus 218 atgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g-t~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~ 296 (479)
T KOG0299|consen 218 ATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG-TSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALS 296 (479)
T ss_pred EecCCCceEEEecCcccchhhcccccccceeeeeeecC-ccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhc
Confidence 99999999999999999999999999999999999987 78888999999999999999999999999999999999887
Q ss_pred CCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecc---
Q 021121 203 YDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH--- 279 (317)
Q Consensus 203 ~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~--- 279 (317)
.++.+.+|+.|+++++|++.... ...+.++.+.+.|++|-.+. .+++|+.+|.|.+|++...+++......|
T Consensus 297 -reR~vtVGgrDrT~rlwKi~ees--qlifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~ 371 (479)
T KOG0299|consen 297 -RERCVTVGGRDRTVRLWKIPEES--QLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI 371 (479)
T ss_pred -ccceEEeccccceeEEEeccccc--eeeeeCCCCCeeeEEEeccc--ceeeccCCceEEEeeecccCceeEeecccccc
Confidence 78888888899999999996533 45677888899999998765 38999999999999998887554443333
Q ss_pred --------cceeEeEEEEeccCCeEEEeecCCcEEEEecCCCCCC
Q 021121 280 --------TEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPRA 316 (317)
Q Consensus 280 --------~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~ 316 (317)
...|++++..|. .+++++|+.+|.|++|.+..+-|+
T Consensus 372 ~~~~~~~~~~Witsla~i~~-sdL~asGS~~G~vrLW~i~~g~r~ 415 (479)
T KOG0299|consen 372 PELDPVNGNFWITSLAVIPG-SDLLASGSWSGCVRLWKIEDGLRA 415 (479)
T ss_pred CCccccccccceeeeEeccc-CceEEecCCCCceEEEEecCCccc
Confidence 237899999997 889999999999999999988654
No 90
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-31 Score=201.76 Aligned_cols=291 Identities=21% Similarity=0.323 Sum_probs=238.3
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
|.+.|..++-... ..++.+.+. |.+-+||.++.+.. .....+|.+.|++++|++.+ .++++++.|++-
T Consensus 147 HkDGiW~Vaa~~t--qpi~gtASA------DhTA~iWs~Esg~C---L~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~ta 214 (481)
T KOG0300|consen 147 HKDGIWHVAADST--QPICGTASA------DHTARIWSLESGAC---LATYTGHTGSVNSIKFHNSG-LLLLTASGDETA 214 (481)
T ss_pred cccceeeehhhcC--Ccceeeccc------ccceeEEeeccccc---eeeecccccceeeEEecccc-ceEEEccCCcch
Confidence 5666777766662 334444443 88999999998762 23334899999999999987 699999999999
Q ss_pred EEEEe------CCC-------------------------------CCCCCceeeccCCcceEEEEEecCCCCEEEEEcCC
Q 021121 86 KIYDT------ALP-------------------------------PTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD 128 (317)
Q Consensus 86 ~v~~~------~~~-------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 128 (317)
.||.. ... .-..++..+.+|.+.|.+..|...++ .+++++.|
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~-Q~vTaSWD 293 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ-QMVTASWD 293 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc-eeeeeecc
Confidence 99972 110 00124556788999999999998887 89999999
Q ss_pred CEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC-CceeeeccCccceEEEEecCCCCcE
Q 021121 129 DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM-GSTMIIPAHEFEILACDWNKYDDCL 207 (317)
Q Consensus 129 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~ 207 (317)
.+..+||+++++.+..+.+|....+.++-+|. .+++++.+.|.+.++||++.. ..+..+++|...|+++.|.. +..
T Consensus 294 RTAnlwDVEtge~v~~LtGHd~ELtHcstHpt-QrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~--dd~ 370 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNILTGHDSELTHCSTHPT-QRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT--DDR 370 (481)
T ss_pred ccceeeeeccCceeccccCcchhccccccCCc-ceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEec--CCc
Confidence 99999999999999999999999999999998 899999999999999999854 34567889999999999985 557
Q ss_pred EEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc---ceeeeeecccceeE
Q 021121 208 IASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED---ALVGRYDHHTEFAV 284 (317)
Q Consensus 208 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~---~~~~~~~~~~~~v~ 284 (317)
+++|+.|.+|++||+++.+.++.++.. .++++.++.+..++ +++.--.+..|++||+.... .+...-++|...|.
T Consensus 371 vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~-iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~ 448 (481)
T KOG0300|consen 371 VVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHP-IIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVT 448 (481)
T ss_pred eeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCc-eEEeccCCceEEEEecCCCccccCCcccccccceeee
Confidence 899999999999999999999988874 56899999998887 78888888999999998654 12234568999999
Q ss_pred eEEEEeccC-CeEEEeecCCcEEEEecCCCC
Q 021121 285 GVDMSVLVE-GLLASTGWDELVYVWQQGMDP 314 (317)
Q Consensus 285 ~~~~~~~~~-~~l~s~~~dg~i~~w~~~~~~ 314 (317)
+++|..+.. .-|+++|.|..+.-|+++.+.
T Consensus 449 c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 449 CCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred eeeccccCcccccccccccceeeeeEecccC
Confidence 999986421 368899999999999998753
No 91
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.3e-31 Score=196.25 Aligned_cols=248 Identities=19% Similarity=0.287 Sum_probs=197.9
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD 137 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 137 (317)
...+.|.+++|||....++++|+.||+||+|+++......+ +....|.++|.+++|+.+|. .+++|+.|+.+++||+.
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQAKLWDLA 102 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc-eEEeeccCCceEEEEcc
Confidence 35668999999997667888999999999999987433333 45667999999999999997 99999999999999999
Q ss_pred CCceeEEeeccccceEEEEEecCCCC--eEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCC
Q 021121 138 RPTSVRTFKEHAYCVYNATWNPRHSD--VFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDK 215 (317)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~ 215 (317)
+++ ...+..|.++|..+.|-+. .. .|++|+.|.+|+.||+|+..++.++. ....++++.. ...+++++..+.
T Consensus 103 S~Q-~~~v~~Hd~pvkt~~wv~~-~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv---~~pm~vVata~r 176 (347)
T KOG0647|consen 103 SGQ-VSQVAAHDAPVKTCHWVPG-MNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADV---LYPMAVVATAER 176 (347)
T ss_pred CCC-eeeeeecccceeEEEEecC-CCcceeEecccccceeecccCCCCeeeeee-ccceeeehhc---cCceeEEEecCC
Confidence 994 5567789999999999876 44 89999999999999999998888877 4456777654 345788888999
Q ss_pred cEEEEEccCCCccEEEE-ecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccc-eeeeeeccc---------ceeE
Q 021121 216 SIKIWDVRNYRVPIAVL-NGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDA-LVGRYDHHT---------EFAV 284 (317)
Q Consensus 216 ~i~v~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~---------~~v~ 284 (317)
.|.+|+++++....... ..-+-.++|++..++... .+.|+-+|.+.|..+..+.+ .-..++-|+ -.|+
T Consensus 177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~-~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVN 255 (347)
T KOG0647|consen 177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDG-FALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVN 255 (347)
T ss_pred cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCc-eEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEec
Confidence 99999998764322222 223456899999999884 68899999999998877521 122334443 2688
Q ss_pred eEEEEeccCCeEEEeecCCcEEEEecCCCCC
Q 021121 285 GVDMSVLVEGLLASTGWDELVYVWQQGMDPR 315 (317)
Q Consensus 285 ~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~ 315 (317)
+|+|+|. -..|+|+|.||+..+||-+...+
T Consensus 256 si~FhP~-hgtlvTaGsDGtf~FWDkdar~k 285 (347)
T KOG0647|consen 256 SIAFHPV-HGTLVTAGSDGTFSFWDKDARTK 285 (347)
T ss_pred ceEeecc-cceEEEecCCceEEEecchhhhh
Confidence 9999998 77999999999999999765443
No 92
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.7e-32 Score=195.07 Aligned_cols=254 Identities=23% Similarity=0.367 Sum_probs=205.7
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEe-cCCCCEEEEEcCCCEEEEEEc
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN-PTRRDSFITSSWDDTVKLWTV 136 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~v~iwd~ 136 (317)
.|.+.|.++...--| ..|++++.|++|+|+..+.......+..+.+|.++|+.++|. |.-..+|++++.||.|.||.-
T Consensus 9 ~H~D~IHda~lDyyg-krlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYG-KRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhHhhhhhhc-ceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 577778777766666 699999999999999999876668888999999999999995 433349999999999999998
Q ss_pred CCCc--eeEEeeccccceEEEEEecCC-CCeEEEEeCCCeEEEEeCCCC---CceeeeccCccceEEEEecCCC--C---
Q 021121 137 DRPT--SVRTFKEHAYCVYNATWNPRH-SDVFCSASGDCTLRIWDVREM---GSTMIIPAHEFEILACDWNKYD--D--- 205 (317)
Q Consensus 137 ~~~~--~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~i~~~~~~--~--- 205 (317)
++++ .......|...|++++|.|.+ +-+|++++.||.|.+.+.+.. ...+....|.-.+++++|.|.. +
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 8773 344556799999999999974 346888999999999998765 2334456799999999999841 2
Q ss_pred --------cEEEEEecCCcEEEEEccCCCcc-EEEEecCCCceeEEEecCCC---CeeEEeeecCCeEEEEecccccc--
Q 021121 206 --------CLIASASVDKSIKIWDVRNYRVP-IAVLNGHGYAVRKVKFSPHR---RNLLASCSYDMTVCLWDFMVEDA-- 271 (317)
Q Consensus 206 --------~~l~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~i~vwd~~~~~~-- 271 (317)
+.|++|+.|..|+||+..+.+-. -.++.+|...|+.++|.|.- +..|++++.||++.||-.+....
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW 247 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence 46999999999999999875422 23488999999999999964 34699999999999998764321
Q ss_pred eeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121 272 LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 272 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
....+......+..++||+. +++|+.++.|+.+.+|.-+.+
T Consensus 248 k~tll~~f~~~~w~vSWS~s-Gn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 248 KKTLLEEFPDVVWRVSWSLS-GNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred cccccccCCcceEEEEEecc-ccEEEEecCCcEEEEEEeCCC
Confidence 12233445678999999999 899999999999999987665
No 93
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.8e-32 Score=205.47 Aligned_cols=251 Identities=18% Similarity=0.281 Sum_probs=213.2
Q ss_pred eeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCc-----eeeccCCcceEEEEEecCCCCEEEEEcCCC
Q 021121 55 VAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPI-----RSLHEHTREVHSADYNPTRRDSFITSSWDD 129 (317)
Q Consensus 55 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 129 (317)
..++.+..+.|..|+||| .+|++|+.||.|.+|+..+++-.+.+ ..+.-+..+|.|+.|+.|.. ++++|+.||
T Consensus 208 IKFg~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqDG 285 (508)
T KOG0275|consen 208 IKFGQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQDG 285 (508)
T ss_pred eecccccchhheeeCCCC-ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-HhhccCcCC
Confidence 345677789999999999 69999999999999999877422222 23345788999999999988 999999999
Q ss_pred EEEEEEcCCCceeEEee-ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEE
Q 021121 130 TVKLWTVDRPTSVRTFK-EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLI 208 (317)
Q Consensus 130 ~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 208 (317)
.|++|.+++|.+++.+. +|...|+++.|+.+ +..+++++.|.++++.-+.+++.+..+.+|.+.|+...|.+ +|..+
T Consensus 286 kIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD-~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~i 363 (508)
T KOG0275|consen 286 KIKVWRIETGQCLRRFDRAHTKGVTCLSFSRD-NSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD-DGHHI 363 (508)
T ss_pred cEEEEEEecchHHHHhhhhhccCeeEEEEccC-cchhhcccccceEEEeccccchhHHHhcCccccccceEEcC-CCCeE
Confidence 99999999999999997 89999999999999 67777999999999999999999999999999999999999 99999
Q ss_pred EEEecCCcEEEEEccCCCccEEEEe--cCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeec---cccee
Q 021121 209 ASASVDKSIKIWDVRNYRVPIAVLN--GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH---HTEFA 283 (317)
Q Consensus 209 ~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~---~~~~v 283 (317)
++++.||+|++|+.++.++ +.+++ +...+|.++..-|.++..++.+...+++.|-++... +++.+.. ..+..
T Consensus 364 isaSsDgtvkvW~~KtteC-~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ--vVrsfsSGkREgGdF 440 (508)
T KOG0275|consen 364 ISASSDGTVKVWHGKTTEC-LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ--VVRSFSSGKREGGDF 440 (508)
T ss_pred EEecCCccEEEecCcchhh-hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce--EEeeeccCCccCCce
Confidence 9999999999999998664 66554 345689999999988777888999999999987643 4444432 23455
Q ss_pred EeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121 284 VGVDMSVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 284 ~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
.+.+.+|. +.+++..+.|+.++.|.+..+
T Consensus 441 i~~~lSpk-GewiYcigED~vlYCF~~~sG 469 (508)
T KOG0275|consen 441 INAILSPK-GEWIYCIGEDGVLYCFSVLSG 469 (508)
T ss_pred EEEEecCC-CcEEEEEccCcEEEEEEeecC
Confidence 66778998 889999999999999987654
No 94
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-31 Score=223.08 Aligned_cols=243 Identities=18% Similarity=0.288 Sum_probs=197.6
Q ss_pred ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCC----------------------------CC-------
Q 021121 5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPA----------------------------AP------- 49 (317)
Q Consensus 5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~----------------------------~~------- 49 (317)
.|...|.++.||+ +|+++|++++ ||.|+||.+... ..
T Consensus 265 ah~gaIw~mKFS~--DGKyLAsaGe------D~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 265 AHKGAIWAMKFSH--DGKYLASAGE------DGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred ccCCcEEEEEeCC--CCceeeecCC------CceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 4788999999999 7999999998 999999998660 00
Q ss_pred ----------c-----------ceeee-eecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCc
Q 021121 50 ----------A-----------LTELV-AFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTR 107 (317)
Q Consensus 50 ----------~-----------~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~ 107 (317)
. .+++. ..+|.+.|.++.|+.++ +|++++.|.+|++|++... .++..+. |..
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~---~CL~~F~-Hnd 410 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRK---ECLKVFS-HND 410 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCc---ceeeEEe-cCC
Confidence 0 00111 12688899999999874 9999999999999999866 6776665 999
Q ss_pred ceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceee
Q 021121 108 EVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMI 187 (317)
Q Consensus 108 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 187 (317)
-|+|++|+|...+++++|+-||.|+||++...+...-.. -..-|++++|.|+ |+..++|+.+|.+++|+.+..+....
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~Pd-Gk~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPD-GKGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccC-CceEEEEEeccEEEEEEccCCeEEEe
Confidence 999999999888899999999999999998776655444 4577999999999 99999999999999999987765544
Q ss_pred ec---------cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCC--ceeEEEecCCCCeeEEeee
Q 021121 188 IP---------AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGY--AVRKVKFSPHRRNLLASCS 256 (317)
Q Consensus 188 ~~---------~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~ 256 (317)
.. .+. .|+.+.+.|.+...+++.+.|..|||||.++.. ++..++++.. .=....|+.+|+ +|++++
T Consensus 489 ~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~-lv~KfKG~~n~~SQ~~Asfs~Dgk-~IVs~s 565 (712)
T KOG0283|consen 489 FHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD-LVHKFKGFRNTSSQISASFSSDGK-HIVSAS 565 (712)
T ss_pred eeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchh-hhhhhcccccCCcceeeeEccCCC-EEEEee
Confidence 32 123 799999999777777788899999999997744 4666665432 224678999999 699999
Q ss_pred cCCeEEEEec
Q 021121 257 YDMTVCLWDF 266 (317)
Q Consensus 257 ~d~~i~vwd~ 266 (317)
+|..|++|+.
T Consensus 566 eDs~VYiW~~ 575 (712)
T KOG0283|consen 566 EDSWVYIWKN 575 (712)
T ss_pred cCceEEEEeC
Confidence 9999999997
No 95
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=2.4e-31 Score=224.47 Aligned_cols=237 Identities=21% Similarity=0.336 Sum_probs=211.3
Q ss_pred CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCcee-eccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121 59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRS-LHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD 137 (317)
Q Consensus 59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 137 (317)
+...+.+..|. + ..+.+++.+.+|++|+...+ ..+.. +.+|.+.|+++++..- ...+++|+.|.++++||..
T Consensus 207 ~~~~~~~~q~~-~--~~~~~~s~~~tl~~~~~~~~---~~i~~~l~GH~g~V~~l~~~~~-~~~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 207 DDHVVLCLQLH-D--GFFKSGSDDSTLHLWDLNNG---YLILTRLVGHFGGVWGLAFPSG-GDKLVSGSTDKTERVWDCS 279 (537)
T ss_pred Ccchhhhheee-c--CeEEecCCCceeEEeecccc---eEEEeeccCCCCCceeEEEecC-CCEEEEEecCCcEEeEecC
Confidence 45678888888 3 48999999999999998765 55555 8999999999999874 4499999999999999999
Q ss_pred CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcE
Q 021121 138 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSI 217 (317)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i 217 (317)
++++...+.+|.+.+.++... +..+++|+.|.+|++|+++++..+..+.+|..+|+++..+ +.++++|+.|++|
T Consensus 280 sg~C~~~l~gh~stv~~~~~~---~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v 353 (537)
T KOG0274|consen 280 TGECTHSLQGHTSSVRCLTID---PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTV 353 (537)
T ss_pred CCcEEEEecCCCceEEEEEcc---CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEEEEEecCceE
Confidence 999999999999999999876 5578889999999999999999999999999999999985 6799999999999
Q ss_pred EEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEE
Q 021121 218 KIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLA 297 (317)
Q Consensus 218 ~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 297 (317)
++||+.+.+ ++..+.+|...|+++.+.+. . .+++|+.|++|++||+++...++..+.+|.+.+..+.+. +++|+
T Consensus 354 ~VW~~~~~~-cl~sl~gH~~~V~sl~~~~~-~-~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~---~~~Lv 427 (537)
T KOG0274|consen 354 KVWDPRTGK-CLKSLSGHTGRVYSLIVDSE-N-RLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR---DNFLV 427 (537)
T ss_pred EEEEhhhce-eeeeecCCcceEEEEEecCc-c-eEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc---cceeE
Confidence 999999866 59999999999999998775 4 699999999999999999844778999999999877776 67999
Q ss_pred EeecCCcEEEEecCCCC
Q 021121 298 STGWDELVYVWQQGMDP 314 (317)
Q Consensus 298 s~~~dg~i~~w~~~~~~ 314 (317)
+++.|+.|++||..+.+
T Consensus 428 s~~aD~~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 428 SSSADGTIKLWDAEEGE 444 (537)
T ss_pred eccccccEEEeecccCc
Confidence 99999999999998764
No 96
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-31 Score=206.06 Aligned_cols=248 Identities=20% Similarity=0.322 Sum_probs=207.5
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD 137 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 137 (317)
+|.+.|.-+.|+++| ++||+++.|.+..+|++......+...++.+|..+|.-+.|+||.+ ++++|+.|..+.+||+.
T Consensus 222 ~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr-yLlaCg~~e~~~lwDv~ 299 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR-YLLACGFDEVLSLWDVD 299 (519)
T ss_pred hCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC-eEEecCchHheeeccCC
Confidence 789999999999999 6999999999999999987766667788999999999999999998 99999999999999999
Q ss_pred CCceeEEeec-cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCc-cceEEEEecCCCCcEEEEEecCC
Q 021121 138 RPTSVRTFKE-HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHE-FEILACDWNKYDDCLIASASVDK 215 (317)
Q Consensus 138 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~~~~d~ 215 (317)
+|.....+.. +...+.+.+|.|| +..+++|+.|+.+..||+.. ..+...++.+ ..|.+++..+ +|+++++.+.|.
T Consensus 300 tgd~~~~y~~~~~~S~~sc~W~pD-g~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~ 376 (519)
T KOG0293|consen 300 TGDLRHLYPSGLGFSVSSCAWCPD-GFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITY-DGKYVLLVTVDK 376 (519)
T ss_pred cchhhhhcccCcCCCcceeEEccC-CceeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcC-CCcEEEEEeccc
Confidence 9988877753 3578999999999 88899999999999999874 3344444332 4589999999 999999999999
Q ss_pred cEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccc--eeEeEEEEeccC
Q 021121 216 SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE--FAVGVDMSVLVE 293 (317)
Q Consensus 216 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~ 293 (317)
.|++|+..+... ..... ...+|++++.|.+++ ++++.-.+..+++||++... +++.+.+|.. .+..-+|-..+.
T Consensus 377 ~i~l~~~e~~~d-r~lis-e~~~its~~iS~d~k-~~LvnL~~qei~LWDl~e~~-lv~kY~Ghkq~~fiIrSCFgg~~~ 452 (519)
T KOG0293|consen 377 KIRLYNREARVD-RGLIS-EEQPITSFSISKDGK-LALVNLQDQEIHLWDLEENK-LVRKYFGHKQGHFIIRSCFGGGND 452 (519)
T ss_pred ceeeechhhhhh-hcccc-ccCceeEEEEcCCCc-EEEEEcccCeeEEeecchhh-HHHHhhcccccceEEEeccCCCCc
Confidence 999999887432 32333 345899999999999 67777789999999999654 6778888865 344556765545
Q ss_pred CeEEEeecCCcEEEEecCCCC
Q 021121 294 GLLASTGWDELVYVWQQGMDP 314 (317)
Q Consensus 294 ~~l~s~~~dg~i~~w~~~~~~ 314 (317)
.++++|+.|+.|+||+...+.
T Consensus 453 ~fiaSGSED~kvyIWhr~sgk 473 (519)
T KOG0293|consen 453 KFIASGSEDSKVYIWHRISGK 473 (519)
T ss_pred ceEEecCCCceEEEEEccCCc
Confidence 799999999999999987653
No 97
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=8.1e-31 Score=216.15 Aligned_cols=288 Identities=16% Similarity=0.260 Sum_probs=226.6
Q ss_pred eEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCC----------CCCeEEEEE
Q 021121 11 YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSES----------HDSLLIAAV 80 (317)
Q Consensus 11 ~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~~l~~~~ 80 (317)
.++.|+|. ...+.+..+ |..++|||+..-+..-+....+-|...|+.+.--|- .+..+.+++
T Consensus 328 IA~~Fdet-~~klscVYn-------dhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCS 399 (1080)
T KOG1408|consen 328 IACQFDET-TDKLSCVYN-------DHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCS 399 (1080)
T ss_pred eEEEecCC-CceEEEEEc-------CceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEec
Confidence 46789985 445555544 889999999877654444455578888888876651 124689999
Q ss_pred cCCeEEEEEeCCCCCCCCc----------------------------------eeeccCCcceEEEEEecCCCCEEEEEc
Q 021121 81 ADGSVKIYDTALPPTANPI----------------------------------RSLHEHTREVHSADYNPTRRDSFITSS 126 (317)
Q Consensus 81 ~dg~i~v~~~~~~~~~~~~----------------------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~ 126 (317)
.|++|++|+++........ ...-...-.+.+++.+|+++ +|++|.
T Consensus 400 sD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq-hLAsGD 478 (1080)
T KOG1408|consen 400 SDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ-HLASGD 478 (1080)
T ss_pred CCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc-eecccC
Confidence 9999999999863111100 00011234689999999998 999999
Q ss_pred CCCEEEEEEcCCCceeEEeeccccceEEEEEecC--CCCeEEEEeCCCeEEEEeCCCC-CceeeeccCccc---------
Q 021121 127 WDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR--HSDVFCSASGDCTLRIWDVREM-GSTMIIPAHEFE--------- 194 (317)
Q Consensus 127 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~--------- 194 (317)
.-|.+++|++.+.+....+.+|...|.|+.|+.. +.++|++++.|..|++||.... .++.++.+|...
T Consensus 479 r~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~ 558 (1080)
T KOG1408|consen 479 RGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACN 558 (1080)
T ss_pred ccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeec
Confidence 9999999999999999999999999999999853 3468999999999999998632 222333333333
Q ss_pred ----------------------------------------eEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe-
Q 021121 195 ----------------------------------------ILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN- 233 (317)
Q Consensus 195 ----------------------------------------v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~- 233 (317)
++.++..| ..+++++++.|..|+|||+.++++ .+.++
T Consensus 559 gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQDrnirif~i~sgKq-~k~FKg 636 (1080)
T KOG1408|consen 559 GLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQDRNIRIFDIESGKQ-VKSFKG 636 (1080)
T ss_pred CCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-CcceEEEEecccceEEEeccccce-eeeecc
Confidence 45556666 777899999999999999999875 56665
Q ss_pred --cCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121 234 --GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG 311 (317)
Q Consensus 234 --~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~ 311 (317)
+|.+..-.+...|.|- |+++...|.++.++|+.+++ ++..+.+|...|+++.|.+| -+.|++.+.||.|.||.+.
T Consensus 637 s~~~eG~lIKv~lDPSgi-Y~atScsdktl~~~Df~sgE-cvA~m~GHsE~VTG~kF~nD-CkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 637 SRDHEGDLIKVILDPSGI-YLATSCSDKTLCFVDFVSGE-CVAQMTGHSEAVTGVKFLND-CKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred cccCCCceEEEEECCCcc-EEEEeecCCceEEEEeccch-hhhhhcCcchheeeeeeccc-chhheeecCCceEEEEECc
Confidence 4666778899999998 79999999999999999997 77899999999999999999 7899999999999999986
Q ss_pred C
Q 021121 312 M 312 (317)
Q Consensus 312 ~ 312 (317)
.
T Consensus 714 ~ 714 (1080)
T KOG1408|consen 714 L 714 (1080)
T ss_pred h
Confidence 4
No 98
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-31 Score=214.64 Aligned_cols=244 Identities=22% Similarity=0.374 Sum_probs=206.4
Q ss_pred CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEE
Q 021121 7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVK 86 (317)
Q Consensus 7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 86 (317)
...|+++.|+| ++.+++.+.. +|.|.|||...... ...+ ...|...|-+++|.. ..+.+|+.++.|.
T Consensus 217 ~~~vtSv~ws~--~G~~LavG~~------~g~v~iwD~~~~k~-~~~~-~~~h~~rvg~laW~~---~~lssGsr~~~I~ 283 (484)
T KOG0305|consen 217 EELVTSVKWSP--DGSHLAVGTS------DGTVQIWDVKEQKK-TRTL-RGSHASRVGSLAWNS---SVLSSGSRDGKIL 283 (484)
T ss_pred CCceEEEEECC--CCCEEEEeec------CCeEEEEehhhccc-cccc-cCCcCceeEEEeccC---ceEEEecCCCcEE
Confidence 67899999999 5666666665 99999999876652 1112 123889999999992 5899999999999
Q ss_pred EEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEE
Q 021121 87 IYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFC 166 (317)
Q Consensus 87 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 166 (317)
.+|+...+. ....+.+|...|..++|++++. ++++|+.|+.+.|||....++...+..|...|.+++|+|....+||
T Consensus 284 ~~dvR~~~~--~~~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLA 360 (484)
T KOG0305|consen 284 NHDVRISQH--VVSTLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLA 360 (484)
T ss_pred EEEEecchh--hhhhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceE
Confidence 999987622 2224889999999999999998 9999999999999999888999999999999999999999889999
Q ss_pred EEe--CCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEE--ecCCcEEEEEccCCCccEEEEecCCCceeEE
Q 021121 167 SAS--GDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASA--SVDKSIKIWDVRNYRVPIAVLNGHGYAVRKV 242 (317)
Q Consensus 167 ~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~ 242 (317)
+|+ .|+.|++||..+++.+..+. ....|.++.|++ ..+.|+++ ..++.|.||+..+.+ ++..+.+|...|..+
T Consensus 361 sGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk-~~kEi~sthG~s~n~i~lw~~ps~~-~~~~l~gH~~RVl~l 437 (484)
T KOG0305|consen 361 TGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSK-KYKELLSTHGYSENQITLWKYPSMK-LVAELLGHTSRVLYL 437 (484)
T ss_pred EcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcC-CCCEEEEecCCCCCcEEEEeccccc-eeeeecCCcceeEEE
Confidence 865 59999999999998888776 567899999999 55444443 356689999999866 488899999999999
Q ss_pred EecCCCCeeEEeeecCCeEEEEeccccc
Q 021121 243 KFSPHRRNLLASCSYDMTVCLWDFMVED 270 (317)
Q Consensus 243 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~ 270 (317)
+++|+|. .+++|+.|.++++|++-...
T Consensus 438 a~SPdg~-~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 438 ALSPDGE-TIVTGAADETLRFWNLFDER 464 (484)
T ss_pred EECCCCC-EEEEecccCcEEeccccCCC
Confidence 9999999 69999999999999987753
No 99
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=100.00 E-value=1.5e-30 Score=213.50 Aligned_cols=277 Identities=19% Similarity=0.277 Sum_probs=227.3
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeE-EEecCCCCCeEEEEEcCCe
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYD-LAWSESHDSLLIAAVADGS 84 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~ 84 (317)
|...|..+++.+ +. .+++++. ||++++|+-.... ........++.+-|.. ++|.+.....+++|+.|+.
T Consensus 13 H~~DVr~v~~~~--~~-~i~s~sR------d~t~~vw~~~~~~-~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 13 HKSDVRAVAVTD--GV-CIISGSR------DGTVKVWAKKGKQ-YLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred CccchheeEecC--Ce-EEeecCC------CCceeeeeccCcc-cccceecccCcceeeccceeccccCcceEeecccce
Confidence 677888888877 33 4455554 9999999875544 1222333356676766 8888644357999999999
Q ss_pred EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCe
Q 021121 85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDV 164 (317)
Q Consensus 85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 164 (317)
|.+|..... .++..+.+|+..|.++....++. +++||.|.++++|.. +++...+++|+..|+++...|. . .
T Consensus 83 i~v~~~~~~---~P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e-~-~ 153 (745)
T KOG0301|consen 83 IIVFKLSQA---EPLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPE-N-T 153 (745)
T ss_pred EEEEecCCC---CchhhhhccccceeeeecCCcCc--eEecccccceEEecc--hhhhcccCCcchheeeeeecCC-C-c
Confidence 999998766 89999999999999999877764 999999999999976 4566679999999999999997 4 7
Q ss_pred EEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEe
Q 021121 165 FCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKF 244 (317)
Q Consensus 165 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~ 244 (317)
+++|+.|.+|++|.- ++.++++.+|...|+.+++-+ +..+++++.||.|+.|++. ++ .+....+|..-|.++..
T Consensus 154 ~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~--~~~flScsNDg~Ir~w~~~-ge-~l~~~~ghtn~vYsis~ 227 (745)
T KOG0301|consen 154 YVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD--DSHFLSCSNDGSIRLWDLD-GE-VLLEMHGHTNFVYSISM 227 (745)
T ss_pred EEeccCcceeeeccC--CchhhhhccchhheeeeEEec--CCCeEeecCCceEEEEecc-Cc-eeeeeeccceEEEEEEe
Confidence 889999999999975 688899999999999999986 3468899999999999994 34 47888899999999997
Q ss_pred cCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121 245 SPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 245 ~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
.+++. +++++++|++++||+.. .+.+.+......|.++.+-++ .-+++|+.||.||||..+..
T Consensus 228 ~~~~~-~Ivs~gEDrtlriW~~~---e~~q~I~lPttsiWsa~~L~N--gDIvvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 228 ALSDG-LIVSTGEDRTLRIWKKD---ECVQVITLPTTSIWSAKVLLN--GDIVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred cCCCC-eEEEecCCceEEEeecC---ceEEEEecCccceEEEEEeeC--CCEEEeccCceEEEEEeccc
Confidence 77776 79999999999999976 466667666668999998886 35888889999999998754
No 100
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-32 Score=225.62 Aligned_cols=252 Identities=17% Similarity=0.212 Sum_probs=208.5
Q ss_pred CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceee-cc---CCcceEEEEEecCCCCEEEEEcCCCEEEEE
Q 021121 59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSL-HE---HTREVHSADYNPTRRDSFITSSWDDTVKLW 134 (317)
Q Consensus 59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~-~~---~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw 134 (317)
......+|..+++- ..++.++. ..+.+|.+............ .. -...+..+.|.....++|++++..|.|.+|
T Consensus 38 ~k~~~nAIs~nr~~-~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vW 115 (839)
T KOG0269|consen 38 LKAKANAISVNRDI-NQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVW 115 (839)
T ss_pred cccccceEeecCCc-ceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEE
Confidence 34556778888876 46666654 46888887754322222221 11 123456788987666799999999999999
Q ss_pred EcCC---CceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEE
Q 021121 135 TVDR---PTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASA 211 (317)
Q Consensus 135 d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~ 211 (317)
|+.. .+.+..+..|+..++++.|++..+++|++|+.||.|++||++..+...++.+....|+.+.|+|..++.++++
T Consensus 116 dlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~ 195 (839)
T KOG0269|consen 116 DLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASI 195 (839)
T ss_pred ecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEe
Confidence 9987 5666788899999999999999999999999999999999999999888888888999999999899999999
Q ss_pred ecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEec
Q 021121 212 SVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVL 291 (317)
Q Consensus 212 ~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 291 (317)
.+.|.+++||+|...++...+.+|.++|.++.|+|++. +|||||.|+.|+|||+.+.+...........+|..+.|-|.
T Consensus 196 ~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~-~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~ 274 (839)
T KOG0269|consen 196 HDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE-WLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPA 274 (839)
T ss_pred cCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc-eeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccC
Confidence 99999999999999988999999999999999999776 89999999999999998766333333344678999999999
Q ss_pred cCCeEEEee--cCCcEEEEecCCC
Q 021121 292 VEGLLASTG--WDELVYVWQQGMD 313 (317)
Q Consensus 292 ~~~~l~s~~--~dg~i~~w~~~~~ 313 (317)
....|++++ .|-.|+|||+..+
T Consensus 275 ~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 275 RSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred ccchhhhhhccccceEEEEeeccc
Confidence 777898887 5889999999764
No 101
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9.6e-30 Score=182.65 Aligned_cols=256 Identities=21% Similarity=0.287 Sum_probs=207.5
Q ss_pred cceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCC---------CCC---CceeeccCCcceEEEEEecC
Q 021121 50 ALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPP---------TAN---PIRSLHEHTREVHSADYNPT 117 (317)
Q Consensus 50 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~---------~~~---~~~~~~~~~~~v~~~~~~~~ 117 (317)
.+..+..+.....|.+++|+|.| .+.++|++..+.+|.....-. ... ..+.-+.|++.|.|.+|+|.
T Consensus 22 ~f~~i~~l~dsqairav~fhp~g-~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 22 HFEAINILEDSQAIRAVAFHPAG-GLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred ceEEEEEecchhheeeEEecCCC-ceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence 45566666778899999999998 599999999999887543210 001 11223468999999999999
Q ss_pred CCCEEEEEcCCCEEEEEEcCCCce-----eEEeeccccceEEEEEecC---CCCeEEEEe-CCCeEEEEeCCCCCceeee
Q 021121 118 RRDSFITSSWDDTVKLWTVDRPTS-----VRTFKEHAYCVYNATWNPR---HSDVFCSAS-GDCTLRIWDVREMGSTMII 188 (317)
Q Consensus 118 ~~~~l~~~~~dg~v~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~---~~~~l~~~~-~dg~i~i~d~~~~~~~~~~ 188 (317)
|. ++++|+.|.+|++..++...+ -..+..|.+.|..++|..+ ++.++++++ .|..|++-|...++....+
T Consensus 101 ge-liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~ 179 (350)
T KOG0641|consen 101 GE-LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL 179 (350)
T ss_pred cC-eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence 98 999999999999987765432 2356778999999999754 345666654 5788999999999999999
Q ss_pred ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec--C-----CCceeEEEecCCCCeeEEeeecCCeE
Q 021121 189 PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG--H-----GYAVRKVKFSPHRRNLLASCSYDMTV 261 (317)
Q Consensus 189 ~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~-----~~~v~~~~~~~~~~~~l~~~~~d~~i 261 (317)
.+|.+.|.++-- .++-++++|+.|.+|++||++-... +..+.. | .+.|.+++..|.|+ +|++|-.|...
T Consensus 180 sghtghilalys--wn~~m~~sgsqdktirfwdlrv~~~-v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~~dssc 255 (350)
T KOG0641|consen 180 SGHTGHILALYS--WNGAMFASGSQDKTIRFWDLRVNSC-VNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGHADSSC 255 (350)
T ss_pred cCCcccEEEEEE--ecCcEEEccCCCceEEEEeeeccce-eeeccCcccCCCcccceeEEEEECCCcc-eeeeccCCCce
Confidence 999999887642 2678999999999999999997653 444321 1 36799999999999 89999999999
Q ss_pred EEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121 262 CLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 262 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
.+||++.++ .++.+..|...|.++.|+|. ..++++++.|..|++-|+..+
T Consensus 256 ~lydirg~r-~iq~f~phsadir~vrfsp~-a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 256 MLYDIRGGR-MIQRFHPHSADIRCVRFSPG-AHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred EEEEeeCCc-eeeeeCCCccceeEEEeCCC-ceEEEEecccceEEEeecccc
Confidence 999999886 77899999999999999997 789999999999999998754
No 102
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-31 Score=217.19 Aligned_cols=285 Identities=18% Similarity=0.235 Sum_probs=233.9
Q ss_pred EEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcce---eeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEE
Q 021121 12 SVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALT---ELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIY 88 (317)
Q Consensus 12 ~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~ 88 (317)
++..++. .++++.+++. ||.|++|+......... ......|...|+.+....++ +.|++++.|-+|++|
T Consensus 29 ~Lq~da~-~~ryLfTgGR------Dg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W 100 (735)
T KOG0308|consen 29 ALQLDAP-NGRYLFTGGR------DGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG-KTLISASSDTTVKVW 100 (735)
T ss_pred hccccCC-CCceEEecCC------CceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC-CceEEecCCceEEEe
Confidence 4555553 5666777775 99999999976543211 12223688899999999887 589999999999999
Q ss_pred EeCCCCCCCCceeeccCCcceEEEEE-ecCCCCEEEEEcCCCEEEEEEcCCCce--eE--------Eee-ccccceEEEE
Q 021121 89 DTALPPTANPIRSLHEHTREVHSADY-NPTRRDSFITSSWDDTVKLWTVDRPTS--VR--------TFK-EHAYCVYNAT 156 (317)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~~~dg~v~iwd~~~~~~--~~--------~~~-~~~~~v~~~~ 156 (317)
+..... ..+..++..|...|.|+++ .++.. ++++|+.|+.|.+||++++.. +. .+. ++...|++++
T Consensus 101 ~~~~~~-~~c~stir~H~DYVkcla~~ak~~~-lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA 178 (735)
T KOG0308|consen 101 NAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE-LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA 178 (735)
T ss_pred ecccCc-chhHhhhhcccchheeeeecccCce-eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence 988653 4567778899999999999 56655 999999999999999997722 22 222 6778999999
Q ss_pred EecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCC
Q 021121 157 WNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHG 236 (317)
Q Consensus 157 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 236 (317)
-++. +.++++|+..+.+++||.++.+.+..+.+|...|..+..++ +|..+++++.||+|++||+...+ ++.++..|.
T Consensus 179 ~N~t-~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQr-Cl~T~~vH~ 255 (735)
T KOG0308|consen 179 MNQT-GTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQR-CLATYIVHK 255 (735)
T ss_pred cCCc-ceEEEecCcccceEEeccccccceeeeeccccceEEEEEcC-CCCeEeecCCCceEEeeeccccc-eeeeEEecc
Confidence 9998 78999999999999999999999999999999999999999 99999999999999999999865 588899999
Q ss_pred CceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121 237 YAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 237 ~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
..|+++..+|+-. .+++|+.||.|..=|+++..... .+.....+|..+..+.. ++-+-+++.|+.|+-|....
T Consensus 256 e~VWaL~~~~sf~-~vYsG~rd~~i~~Tdl~n~~~~t-lick~daPv~~l~~~~~-~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 256 EGVWALQSSPSFT-HVYSGGRDGNIYRTDLRNPAKST-LICKEDAPVLKLHLHEH-DNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred CceEEEeeCCCcc-eEEecCCCCcEEecccCCchhhe-EeecCCCchhhhhhccc-cCCceeeeccccceecCCcc
Confidence 9999999999988 69999999999999999865333 33334567888887765 45557778899999998764
No 103
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-32 Score=235.48 Aligned_cols=303 Identities=19% Similarity=0.371 Sum_probs=245.2
Q ss_pred eeEEEEecCCCCeEEEEEec-cc--ccccCceEEEEecCCCCC--cceeeeeecCCCCeeEEEecCCCCC---eEEEEEc
Q 021121 10 GYSVKFSPFYESRLAVATAQ-NF--GILGNGRVHVLDLSPAAP--ALTELVAFDTADGVYDLAWSESHDS---LLIAAVA 81 (317)
Q Consensus 10 v~~~~~~p~~~~~~~~~~~~-~~--~~~~~g~i~i~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~---~l~~~~~ 81 (317)
--.++|+|.....+++++.. .+ ....+..+.||.++.... .++....+.....-+.++|.+.+.. +|+.|..
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeecccc
Confidence 34578999642233333221 11 112356777777764433 2456666677788999999987754 5999999
Q ss_pred CCeEEEEEeCC---CCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee--ccccceEEEE
Q 021121 82 DGSVKIYDTAL---PPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK--EHAYCVYNAT 156 (317)
Q Consensus 82 dg~i~v~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~ 156 (317)
||.|.+||... +.....+.....|.+.|..+.|++.+.++|++|+.||.|.|||++..+.-.... ...+.|.+++
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS 168 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence 99999999875 334456677789999999999999998899999999999999998765444442 2467899999
Q ss_pred EecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCcc--ceEEEEecCCCCcEEEEEecCC---cEEEEEccCCCccEEE
Q 021121 157 WNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEF--EILACDWNKYDDCLIASASVDK---SIKIWDVRNYRVPIAV 231 (317)
Q Consensus 157 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~~i~~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~ 231 (317)
|+....++|++++.+|.+.|||+|..+++..+..+.. .+..++|+|.....++++++|. .|.+||+|....+++.
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~ 248 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI 248 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh
Confidence 9998888999999999999999999888877765543 4778999997777888888765 5999999998889999
Q ss_pred EecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121 232 LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG 311 (317)
Q Consensus 232 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~ 311 (317)
+.+|...|.++.|++.+.++|++++.|+.|.+|+.++++ ++..+......+..+.|+|....++++++.||.|.|+.+.
T Consensus 249 ~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE-vl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 249 LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE-VLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce-EeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence 999999999999999997799999999999999999987 6677777788999999999877799999999999999986
Q ss_pred CC
Q 021121 312 MD 313 (317)
Q Consensus 312 ~~ 313 (317)
..
T Consensus 328 ~~ 329 (1049)
T KOG0307|consen 328 GT 329 (1049)
T ss_pred cC
Confidence 53
No 104
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.98 E-value=3.2e-30 Score=200.87 Aligned_cols=239 Identities=21% Similarity=0.338 Sum_probs=209.4
Q ss_pred CCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc
Q 021121 61 DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT 140 (317)
Q Consensus 61 ~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 140 (317)
.++.++...|.. ..+++|+.|..+.++|.... ..+..+++|...|+.+.++|+.. .+++++.|..|++|......
T Consensus 220 pgi~ald~~~s~-~~ilTGG~d~~av~~d~~s~---q~l~~~~Gh~kki~~v~~~~~~~-~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSS-SKILTGGEDKTAVLFDKPSN---QILATLKGHTKKITSVKFHKDLD-TVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCC-CcceecCCCCceEEEecchh---hhhhhccCcceEEEEEEeccchh-heeecCCcceEEeecccccc
Confidence 468888888874 68999999999999998766 78889999999999999999987 89999999999999998888
Q ss_pred eeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc--CccceEEEEecCCCCcEEEEEecCCcEE
Q 021121 141 SVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA--HEFEILACDWNKYDDCLIASASVDKSIK 218 (317)
Q Consensus 141 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~l~~~~~d~~i~ 218 (317)
.......|..+|+.+..+|. +.+|++++.||+..+.|++++..+..... ..-.+++.+|+| +|.+|.+|..|+.++
T Consensus 295 ~~~~~~~h~~~V~~ls~h~t-geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vk 372 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHPT-GEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVK 372 (506)
T ss_pred CccccccccccceeeeeccC-CcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEE
Confidence 77888899999999999999 89999999999999999999988877654 234589999999 999999999999999
Q ss_pred EEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEE
Q 021121 219 IWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLAS 298 (317)
Q Consensus 219 v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 298 (317)
+||+.++. .+..+.+|.++|..++|+.+|- +|+++.+|+.|++||++..+............+.+++|.+. +.+|+.
T Consensus 373 iwdlks~~-~~a~Fpght~~vk~i~FsENGY-~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~S-Gt~L~~ 449 (506)
T KOG0289|consen 373 IWDLKSQT-NVAKFPGHTGPVKAISFSENGY-WLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQS-GTYLGI 449 (506)
T ss_pred EEEcCCcc-ccccCCCCCCceeEEEeccCce-EEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCC-CCeEEe
Confidence 99999877 5889999999999999998885 89999999999999999887433222233347999999998 889999
Q ss_pred eecCCcEEEEe
Q 021121 299 TGWDELVYVWQ 309 (317)
Q Consensus 299 ~~~dg~i~~w~ 309 (317)
+|.|=.|++++
T Consensus 450 ~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 450 AGSDLQVYICK 460 (506)
T ss_pred ecceeEEEEEe
Confidence 98777777666
No 105
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.98 E-value=3.7e-30 Score=201.72 Aligned_cols=295 Identities=17% Similarity=0.231 Sum_probs=221.8
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcce-eeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALT-ELVAFDTADGVYDLAWSESHDSLLIAAVADGS 84 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 84 (317)
+..+|++++|+|..+..+++++.. -|.|-+||+...++... ......|..+|.+|.|+|.+...+++.+.||+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK------~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDK------GGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cccceEEEEecccCcceEEEEccC------CCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 568899999999877688888876 89999999953333232 33334788999999999988889999999999
Q ss_pred EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce-eEEeeccccceEEEEEecCCCC
Q 021121 85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-VRTFKEHAYCVYNATWNPRHSD 163 (317)
Q Consensus 85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~ 163 (317)
|++-|++.. ..+.+..+......+..+.|+.+.. .++.+..=|...+||++++.. ...+..|...|.+++++|..+.
T Consensus 259 iR~~D~~~~-i~e~v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 259 IRLQDFEGN-ISEEVLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPW 336 (498)
T ss_pred eeeeeecch-hhHHHhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCch
Confidence 999999865 2333333444556777888988877 677777777999999998754 6667778889999999999899
Q ss_pred eEEEEeCCCeEEEEeCCCCCce----eeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEcc---CCCccEEEEecCC
Q 021121 164 VFCSASGDCTLRIWDVREMGST----MIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR---NYRVPIAVLNGHG 236 (317)
Q Consensus 164 ~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~---~~~~~~~~~~~~~ 236 (317)
++++++.|++++|||+|+.... .....|...|.+..|+|.++. |++.+.|..|+|||.. ....+...+. |+
T Consensus 337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn 414 (498)
T KOG4328|consen 337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIP-HN 414 (498)
T ss_pred heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceee-cc
Confidence 9999999999999999975332 334469999999999995555 8899999999999984 2223333332 32
Q ss_pred C------ceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeE-EEEeccCCeEEEeecCCcEEEEe
Q 021121 237 Y------AVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGV-DMSVLVEGLLASTGWDELVYVWQ 309 (317)
Q Consensus 237 ~------~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~s~~~dg~i~~w~ 309 (317)
. ......|.|+.. ++++|-.-..|-|+|-..++.+..........|.++ .|+|-+..+++.++..|.|+||-
T Consensus 415 ~~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 415 NRTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred CcccccccchhheeCCCcc-EEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 1 234578999877 899999888999999777653333233333355554 88998333555556788999886
Q ss_pred cC
Q 021121 310 QG 311 (317)
Q Consensus 310 ~~ 311 (317)
-.
T Consensus 494 ~k 495 (498)
T KOG4328|consen 494 NK 495 (498)
T ss_pred cC
Confidence 43
No 106
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=5.1e-31 Score=214.79 Aligned_cols=249 Identities=22% Similarity=0.316 Sum_probs=212.5
Q ss_pred CCCCee---EEEecCCCCCeEEEEEcCCeEEEEEeCCCCCC---CCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEE
Q 021121 59 TADGVY---DLAWSESHDSLLIAAVADGSVKIYDTALPPTA---NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVK 132 (317)
Q Consensus 59 ~~~~v~---~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~ 132 (317)
+...+. .+..+..+.++|++|+.||.|++|++...... .....++.|..-|+.+....+++ .|++++.|-+|+
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~-tlIS~SsDtTVK 98 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK-TLISASSDTTVK 98 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC-ceEEecCCceEE
Confidence 344455 55666555578999999999999998765321 23667889999999999998887 899999999999
Q ss_pred EEEcCCC--ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc--e--------eeec-cCccceEEEE
Q 021121 133 LWTVDRP--TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS--T--------MIIP-AHEFEILACD 199 (317)
Q Consensus 133 iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~--------~~~~-~~~~~v~~i~ 199 (317)
+|+...+ -++..+..|...|.|++.-..+..++++|+-|+.|.+||++++.. + ..+. ++..+|++++
T Consensus 99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA 178 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA 178 (735)
T ss_pred EeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence 9999877 577888899999999999444488999999999999999997722 2 1222 6778899999
Q ss_pred ecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecc
Q 021121 200 WNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH 279 (317)
Q Consensus 200 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 279 (317)
.++ .+..+++|+..+.+++||.++.+. +..+.+|...|..+..+++|.. +++++.||+|++||+...+ ++.++..|
T Consensus 179 ~N~-t~t~ivsGgtek~lr~wDprt~~k-imkLrGHTdNVr~ll~~dDGt~-~ls~sSDgtIrlWdLgqQr-Cl~T~~vH 254 (735)
T KOG0308|consen 179 MNQ-TGTIIVSGGTEKDLRLWDPRTCKK-IMKLRGHTDNVRVLLVNDDGTR-LLSASSDGTIRLWDLGQQR-CLATYIVH 254 (735)
T ss_pred cCC-cceEEEecCcccceEEeccccccc-eeeeeccccceEEEEEcCCCCe-EeecCCCceEEeeeccccc-eeeeEEec
Confidence 999 899999999999999999999775 7788899999999999999995 8899999999999999876 66789999
Q ss_pred cceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121 280 TEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 280 ~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
...|.++..+|+ =..+++|+.||.|..=|+...
T Consensus 255 ~e~VWaL~~~~s-f~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 255 KEGVWALQSSPS-FTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred cCceEEEeeCCC-cceEEecCCCCcEEecccCCc
Confidence 999999999987 789999999999999888764
No 107
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.98 E-value=2.6e-30 Score=198.00 Aligned_cols=253 Identities=25% Similarity=0.459 Sum_probs=203.2
Q ss_pred eeecCCCCeeEEEecCCCC-CeEEEEEcCCeEEEEEeCCC-------------CCCCCceeeccCCcceEEEEEecCCCC
Q 021121 55 VAFDTADGVYDLAWSESHD-SLLIAAVADGSVKIYDTALP-------------PTANPIRSLHEHTREVHSADYNPTRRD 120 (317)
Q Consensus 55 ~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~v~~~~~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~~~ 120 (317)
....|.+.++.+.-.+.++ .+.++=+..|.|+||++... ...+++.++.+|...=+.++|+|-...
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 3446777888888777643 45555677899999998642 234677788899999999999996544
Q ss_pred EEEEEcCCCEEEEEEcCCCce---eEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCC--ceeeeccCccce
Q 021121 121 SFITSSWDDTVKLWTVDRPTS---VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMG--STMIIPAHEFEI 195 (317)
Q Consensus 121 ~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v 195 (317)
.+++|.--+.|++|...++.- ...+.+|+..|..++|+|....+|++|+.||+|+|||+|.+. .....+.|.+.|
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDV 305 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDV 305 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCce
Confidence 689998889999999988642 224557999999999999999999999999999999999873 233447899999
Q ss_pred EEEEecCCCCcEEEEEecCCcEEEEEccCCC--ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccc--
Q 021121 196 LACDWNKYDDCLIASASVDKSIKIWDVRNYR--VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDA-- 271 (317)
Q Consensus 196 ~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~-- 271 (317)
+.|.|+. ...+|++|+.||+++|||+|+.+ .++..++-|..+|+++.|+|.....|++++.|..|.+||+.....
T Consensus 306 NVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~e 384 (440)
T KOG0302|consen 306 NVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEE 384 (440)
T ss_pred eeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChh
Confidence 9999998 66699999999999999999754 578899999999999999998877899999999999999864321
Q ss_pred -------------eeeeeecc--cceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121 272 -------------LVGRYDHH--TEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309 (317)
Q Consensus 272 -------------~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~ 309 (317)
+.+.+.-| ...+..+.|+++...+|++.+.|| +.||.
T Consensus 385 e~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 385 EIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred hhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 11222333 346888999999888999999999 45554
No 108
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.98 E-value=1.9e-30 Score=206.27 Aligned_cols=255 Identities=24% Similarity=0.317 Sum_probs=198.9
Q ss_pred eeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCC-CCceee-ccCCcceEEEEEecCCCCEEEEEcCCCE
Q 021121 53 ELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTA-NPIRSL-HEHTREVHSADYNPTRRDSFITSSWDDT 130 (317)
Q Consensus 53 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~-~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 130 (317)
++...+|...|.++++.|.| ..|++|+.|..|++||+...... ...+.+ ......|.++.|++.+. .|++.+....
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~G-aR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~-~iLvvsg~aq 237 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSG-ARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD-QILVVSGSAQ 237 (641)
T ss_pred eEeccCCceEEEEeeecCCC-ceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCC-eEEEEecCcc
Confidence 34444677889999999998 69999999999999999754211 112222 23456899999999998 6777777889
Q ss_pred EEEEEcCCCceeEE------------eeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCce-eeec-----cCc
Q 021121 131 VKLWTVDRPTSVRT------------FKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST-MIIP-----AHE 192 (317)
Q Consensus 131 v~iwd~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~-----~~~ 192 (317)
.+++|-...+.... -++|...++|.+|+|.....+++++.||++++||+.+.+.. ..++ +..
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 99999764433322 25788999999999998999999999999999999876432 2332 334
Q ss_pred cceEEEEecCCCCcEEEEEecCCcEEEEEccCCCc--cEEEEecCCC--ceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121 193 FEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV--PIAVLNGHGY--AVRKVKFSPHRRNLLASCSYDMTVCLWDFMV 268 (317)
Q Consensus 193 ~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~ 268 (317)
-++++++|+| ++++||+|..||.|.+|+.++... ....-.+|.. .|+||.||++|+ +|++-+.|+++++||++.
T Consensus 318 v~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 318 VPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN-YLLSRGFDDTLKVWDLRQ 395 (641)
T ss_pred cCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc-hhhhccCCCceeeeeccc
Confidence 5689999999 999999999999999999865432 2334456766 899999999999 699999999999999999
Q ss_pred ccceeeeeecc--cceeEeEEEEeccCCeEEEeec------CCcEEEEecCC
Q 021121 269 EDALVGRYDHH--TEFAVGVDMSVLVEGLLASTGW------DELVYVWQQGM 312 (317)
Q Consensus 269 ~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~------dg~i~~w~~~~ 312 (317)
.++++....+- ..+-+.++|||+ .++|++|.. .|.+.+||..+
T Consensus 396 ~kkpL~~~tgL~t~~~~tdc~FSPd-~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 396 FKKPLNVRTGLPTPFPGTDCCFSPD-DKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred cccchhhhcCCCccCCCCccccCCC-ceEEEecccccCCCCCceEEEEeccc
Confidence 88666555543 335678999999 889999873 57788888654
No 109
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2.5e-30 Score=194.45 Aligned_cols=245 Identities=23% Similarity=0.349 Sum_probs=217.4
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEc-
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTV- 136 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~- 136 (317)
+|+.+|..++-.... .++.+++.|.+.+||.++.+ .++..+.+|.+.|++++|++.+. ++++++.|++-.||..
T Consensus 146 GHkDGiW~Vaa~~tq-pi~gtASADhTA~iWs~Esg---~CL~~Y~GH~GSVNsikfh~s~~-L~lTaSGD~taHIW~~a 220 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQ-PICGTASADHTARIWSLESG---ACLATYTGHTGSVNSIKFHNSGL-LLLTASGDETAHIWKAA 220 (481)
T ss_pred ccccceeeehhhcCC-cceeecccccceeEEeeccc---cceeeecccccceeeEEeccccc-eEEEccCCcchHHHHHh
Confidence 799999999987654 59999999999999999887 89999999999999999999987 9999999999999962
Q ss_pred -----CC------------------------------C----ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEE
Q 021121 137 -----DR------------------------------P----TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIW 177 (317)
Q Consensus 137 -----~~------------------------------~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~ 177 (317)
.. + .++..+.+|.+.|.+..|... ++.+++++.|.+..+|
T Consensus 221 v~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g-g~Q~vTaSWDRTAnlw 299 (481)
T KOG0300|consen 221 VNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG-GQQMVTASWDRTANLW 299 (481)
T ss_pred hcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC-cceeeeeeccccceee
Confidence 10 0 134466788999999999987 8889999999999999
Q ss_pred eCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeec
Q 021121 178 DVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSY 257 (317)
Q Consensus 178 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 257 (317)
|+++++.+..+.+|+...+.++-+| ..+++++.+.|.+.++||++..-..+..+.+|...|+++.|..+.+ +++|+.
T Consensus 300 DVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~--vVSgSD 376 (481)
T KOG0300|consen 300 DVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR--VVSGSD 376 (481)
T ss_pred eeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc--eeecCC
Confidence 9999999999999999999999999 9999999999999999999976667888999999999999998875 899999
Q ss_pred CCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121 258 DMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 258 d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
|.+|++||+++-...+..+.. .++++.++.+.. ..+|+.--.+..|++||++..
T Consensus 377 DrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g-~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 377 DRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKG-HPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred CceEEEeeeccccCcceeeec-CCccceeEeecC-CceEEeccCCceEEEEecCCC
Confidence 999999999998877777664 567899999875 568888888899999999864
No 110
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6e-29 Score=186.86 Aligned_cols=288 Identities=14% Similarity=0.208 Sum_probs=217.1
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcc-eeeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPAL-TELVAFDTADGVYDLAWSESHDSLLIAAVADGS 84 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 84 (317)
|...|++++|+. +++.+++... |+.|++|++..-...- +.+...-.-+..+.+.|.||-..+++..-...+
T Consensus 85 H~~~vt~~~FsS--dGK~lat~~~------Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 85 HKKEVTDVAFSS--DGKKLATISG------DRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred cCCceeeeEEcC--CCceeEEEeC------CceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCE
Confidence 778999999999 6777777665 9999999997643211 111111112246789999998777777777889
Q ss_pred EEEEEeCCCCCCCCc---------eeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEE
Q 021121 85 VKIYDTALPPTANPI---------RSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNA 155 (317)
Q Consensus 85 i~v~~~~~~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~ 155 (317)
+++|.+...+.+... ..-+.|.-.+..+-....+. ++++++.|..|.+|+++ |+.+..+......-+..
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a 234 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA 234 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence 999988754332211 11234666777777776666 99999999999999998 88888888777778889
Q ss_pred EEecCCCCeEEEEeCCCeEEEEeCCC---C-----CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCC--
Q 021121 156 TWNPRHSDVFCSASGDCTLRIWDVRE---M-----GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNY-- 225 (317)
Q Consensus 156 ~~~~~~~~~l~~~~~dg~i~i~d~~~---~-----~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~-- 225 (317)
+.+|+ ++++++++..--|++|.+-- + .....+++|...|..++|+| +...+++.+.||++++||..-.
T Consensus 235 avSP~-GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSkDG~wriwdtdVrY~ 312 (420)
T KOG2096|consen 235 AVSPD-GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDTDVRYE 312 (420)
T ss_pred eeCCC-CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-CcceeEEEecCCcEEEeeccceEe
Confidence 99999 99999999999999998632 2 34567889999999999999 9999999999999999997521
Q ss_pred --Ccc--EEE----EecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEE
Q 021121 226 --RVP--IAV----LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLA 297 (317)
Q Consensus 226 --~~~--~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 297 (317)
+.+ +.. +....+....+.++|.++ .|+. +....++++..++++..-..-+.|+..|.+++|+++ +++++
T Consensus 313 ~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~-~lA~-s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~-g~~~a 389 (420)
T KOG2096|consen 313 AGQDPKILKEGSAPLHAAGSEPVRLELSPSGD-SLAV-SFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSD-GKYIA 389 (420)
T ss_pred cCCCchHhhcCCcchhhcCCCceEEEeCCCCc-EEEe-ecCCceEEEEcccCccchhHHHhhcCceeeEEecCC-CcEEe
Confidence 111 111 111223334899999998 4554 446679999999987554555679999999999999 88999
Q ss_pred EeecCCcEEEEe
Q 021121 298 STGWDELVYVWQ 309 (317)
Q Consensus 298 s~~~dg~i~~w~ 309 (317)
++| |..+++..
T Consensus 390 tcG-dr~vrv~~ 400 (420)
T KOG2096|consen 390 TCG-DRYVRVIR 400 (420)
T ss_pred eec-ceeeeeec
Confidence 987 77788876
No 111
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.1e-29 Score=199.57 Aligned_cols=264 Identities=17% Similarity=0.229 Sum_probs=214.0
Q ss_pred CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEe
Q 021121 36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN 115 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 115 (317)
...|.+|.+.+..... ...--+++|.+++-+|.| .+|+.|+..|.+++|.+.++ ..+..+..|-..|+|+.|+
T Consensus 60 rp~l~vw~i~k~~~~~---q~~v~Pg~v~al~s~n~G-~~l~ag~i~g~lYlWelssG---~LL~v~~aHYQ~ITcL~fs 132 (476)
T KOG0646|consen 60 RPLLHVWEILKKDQVV---QYIVLPGPVHALASSNLG-YFLLAGTISGNLYLWELSSG---ILLNVLSAHYQSITCLKFS 132 (476)
T ss_pred CccccccccCchhhhh---hhcccccceeeeecCCCc-eEEEeecccCcEEEEEeccc---cHHHHHHhhccceeEEEEe
Confidence 4578888887654222 233467889999999998 68888889999999999988 8888889999999999999
Q ss_pred cCCCCEEEEEcCCCEEEEEEcC---------CCceeEEeeccccceEEEEEecC-CCCeEEEEeCCCeEEEEeCCCCCce
Q 021121 116 PTRRDSFITSSWDDTVKLWTVD---------RPTSVRTFKEHAYCVYNATWNPR-HSDVFCSASGDCTLRIWDVREMGST 185 (317)
Q Consensus 116 ~~~~~~l~~~~~dg~v~iwd~~---------~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~ 185 (317)
.|+. +|++|+.||.|.+|.+. +.++...+..|.-+|+++...+. -...+++++.|.++++||+..+..+
T Consensus 133 ~dgs-~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL 211 (476)
T KOG0646|consen 133 DDGS-HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL 211 (476)
T ss_pred CCCc-EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee
Confidence 9998 99999999999999873 34677888999999999998765 2457899999999999999999888
Q ss_pred eeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCC---------------ccEEEEecCCC--ceeEEEecCCC
Q 021121 186 MIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR---------------VPIAVLNGHGY--AVRKVKFSPHR 248 (317)
Q Consensus 186 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~---------------~~~~~~~~~~~--~v~~~~~~~~~ 248 (317)
.++. ....+.+++.+| .+..+.+|+.+|.|.+.++.+.. .....+.+|.. +|+|++.+-||
T Consensus 212 lti~-fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg 289 (476)
T KOG0646|consen 212 LTIT-FPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG 289 (476)
T ss_pred EEEe-cCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc
Confidence 8876 567899999999 89999999999999998876433 12345667877 99999999999
Q ss_pred CeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121 249 RNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG 311 (317)
Q Consensus 249 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~ 311 (317)
. +|++|+.||.+.|||+.+.+ +++++....++|+.+.+.|-....+..-...-.+-.|++.
T Consensus 290 t-lLlSGd~dg~VcvWdi~S~Q-~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk 350 (476)
T KOG0646|consen 290 T-LLLSGDEDGKVCVWDIYSKQ-CIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLK 350 (476)
T ss_pred c-EEEeeCCCCCEEEEecchHH-HHHHHhhhccccceeEeeccccceecccccCccCCchHhh
Confidence 8 89999999999999999876 5666665778999999966522333333333444444443
No 112
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.9e-29 Score=196.23 Aligned_cols=288 Identities=13% Similarity=0.158 Sum_probs=225.2
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCC-cceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAP-ALTELVAFDTADGVYDLAWSESHDSLLIAAVADGS 84 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 84 (317)
....|+++.|+| ...++..++. ||.++||.++.... .++.+. -...+|.+.+|.|+|...+++++....
T Consensus 212 s~~~I~sv~FHp--~~plllvaG~------d~~lrifqvDGk~N~~lqS~~--l~~fPi~~a~f~p~G~~~i~~s~rrky 281 (514)
T KOG2055|consen 212 SHGGITSVQFHP--TAPLLLVAGL------DGTLRIFQVDGKVNPKLQSIH--LEKFPIQKAEFAPNGHSVIFTSGRRKY 281 (514)
T ss_pred CcCCceEEEecC--CCceEEEecC------CCcEEEEEecCccChhheeee--eccCccceeeecCCCceEEEecccceE
Confidence 346899999999 4555555554 99999999986543 233333 245679999999999769999999999
Q ss_pred EEEEEeCCCCCCCCceeeccC-CcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCC
Q 021121 85 VKIYDTALPPTANPIRSLHEH-TREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSD 163 (317)
Q Consensus 85 i~v~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 163 (317)
.+.||+.+.+ ...+....++ ...+.....+++++ +|+..+..|.|.+....+++.+..++ ..+.|..++|+.+ +.
T Consensus 282 ~ysyDle~ak-~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSd-sk 357 (514)
T KOG2055|consen 282 LYSYDLETAK-VTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSD-SK 357 (514)
T ss_pred EEEeeccccc-cccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecC-Cc
Confidence 9999998752 2233333333 34677788899998 99999999999999999999999887 5678999999988 78
Q ss_pred eEEEEeCCCeEEEEeCCCCCceeeeccCcc-ceEEEEecCCCCcEEEEEecCCcEEEEEccCC-----CccEEEEecCCC
Q 021121 164 VFCSASGDCTLRIWDVREMGSTMIIPAHEF-EILACDWNKYDDCLIASASVDKSIKIWDVRNY-----RVPIAVLNGHGY 237 (317)
Q Consensus 164 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~-----~~~~~~~~~~~~ 237 (317)
.|++++.+|.|.+||+++..++..+..... .-++++.++ ++.++|+|+..|.|.|||..+. ..|+..+..-..
T Consensus 358 ~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt 436 (514)
T KOG2055|consen 358 ELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTT 436 (514)
T ss_pred EEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecC-CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhe
Confidence 888888999999999999988888763322 235677788 8999999999999999996532 235666666677
Q ss_pred ceeEEEecCCCCeeEEeeec--CCeEEEEecccccceeeeeec---ccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121 238 AVRKVKFSPHRRNLLASCSY--DMTVCLWDFMVEDALVGRYDH---HTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG 311 (317)
Q Consensus 238 ~v~~~~~~~~~~~~l~~~~~--d~~i~vwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~ 311 (317)
.|++++|+|+.+ +|+.+|. ...+++--+.+.. +...+.. .-+.|++|+|+|. +.++|.|..+|.+.+|.+.
T Consensus 437 ~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~T-VFsNfP~~n~~vg~vtc~aFSP~-sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 437 AITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSCT-VFSNFPTSNTKVGHVTCMAFSPN-SGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeeeCcchh-hhhhhhhccccceEEEecccee-eeccCCCCCCcccceEEEEecCC-CceEEeecCCCceeeEeec
Confidence 899999999998 7877764 5678888777654 2222222 2346899999998 7899999999999999985
No 113
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.97 E-value=3.8e-29 Score=185.46 Aligned_cols=287 Identities=24% Similarity=0.386 Sum_probs=227.2
Q ss_pred CCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC-------CeEEEEEeCC
Q 021121 20 ESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD-------GSVKIYDTAL 92 (317)
Q Consensus 20 ~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~v~~~~~ 92 (317)
.-.|++++.... .++.|.+.++++.+..+.....+.+.+.|..++-+|..+.+|+++..+ ..+.||.+..
T Consensus 26 ~icFlvgTnslK---~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe 102 (370)
T KOG1007|consen 26 HICFLVGTNSLK---EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPE 102 (370)
T ss_pred ceEEEEeccccC---CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEeccc
Confidence 345666665322 378999999998877676666778899999999999988888888663 2478999876
Q ss_pred CCCC------CCceeec-cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce-eEEee-----ccccceEEEEEec
Q 021121 93 PPTA------NPIRSLH-EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-VRTFK-----EHAYCVYNATWNP 159 (317)
Q Consensus 93 ~~~~------~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~-----~~~~~v~~~~~~~ 159 (317)
+... +.+..+. .+-+.|.|+.|.|++. .+++-. |..|.+|+++++.. ...+. .+....++-+|+|
T Consensus 103 ~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~-klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~Wsp 180 (370)
T KOG1007|consen 103 PLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD-KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSP 180 (370)
T ss_pred ccCccccchhhHhhcCCHHHhCceeeEEEcCCCC-eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCC
Confidence 4222 2333343 4556999999999887 666665 88999999988755 33332 2455678889999
Q ss_pred C-CCCeEEEEeCCCeEEEEeCCCCCceeeec-cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCC
Q 021121 160 R-HSDVFCSASGDCTLRIWDVREMGSTMIIP-AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGY 237 (317)
Q Consensus 160 ~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 237 (317)
. +++.+ ....|+++..||+|+.+....+. .|...+..+.|+|....+|++|+.||.|++||.|+.+.++..+.+|..
T Consensus 181 HHdgnqv-~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH 259 (370)
T KOG1007|consen 181 HHDGNQV-ATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH 259 (370)
T ss_pred CCccceE-EEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce
Confidence 3 45555 45568999999999987766654 677889999999977889999999999999999999999999999999
Q ss_pred ceeEEEecCCCCeeEEeeecCCeEEEEeccccc----------------------------ceeeeeecccceeEeEEEE
Q 021121 238 AVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED----------------------------ALVGRYDHHTEFAVGVDMS 289 (317)
Q Consensus 238 ~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~----------------------------~~~~~~~~~~~~v~~~~~~ 289 (317)
.|+++.|+|....++.+|+.|..|.+|...+-. ..+.++..|+..|++++|+
T Consensus 260 WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWS 339 (370)
T KOG1007|consen 260 WVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWS 339 (370)
T ss_pred EEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeec
Confidence 999999999988899999999999999754310 2235778899999999999
Q ss_pred eccCCeEEEeecCCcEEEEecCC
Q 021121 290 VLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 290 ~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
...+-++|+-+.||.+.|=++..
T Consensus 340 sadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 340 SADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred cCCCeeEEEeccCceEEeecCCh
Confidence 87677999999999998876653
No 114
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.97 E-value=5.6e-29 Score=184.72 Aligned_cols=298 Identities=22% Similarity=0.321 Sum_probs=231.4
Q ss_pred ceecCcceeEEEEec--CCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCC----CCeE
Q 021121 3 VFKTPFNGYSVKFSP--FYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESH----DSLL 76 (317)
Q Consensus 3 ~~~~~~~v~~~~~~p--~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l 76 (317)
.|+.+.+++++.|+. +...++++++-.. -..++|.|..++.....+.....++|.-+++.+.|.|+. +.+|
T Consensus 40 ~Y~ap~~lya~~Ws~~~~~~~rla~gS~~E---e~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlL 116 (364)
T KOG0290|consen 40 TYNAPWPLYAMNWSVRPDKKFRLAVGSFIE---EYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLL 116 (364)
T ss_pred EecCCCceeeeccccCCCcceeEEEeeecc---ccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchh
Confidence 467888999999994 3345566554321 125789999988776666666778999999999999975 2356
Q ss_pred EEEEcCCeEEEEEeCCCCCC-CCcee-----eccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc---eeEEeec
Q 021121 77 IAAVADGSVKIYDTALPPTA-NPIRS-----LHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT---SVRTFKE 147 (317)
Q Consensus 77 ~~~~~dg~i~v~~~~~~~~~-~~~~~-----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~ 147 (317)
|+.+ ..+++|.+...+.. .+... -..+.+++++..|+.-..+++.+++-|-+..|||++++. ....+-+
T Consensus 117 ATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA 194 (364)
T KOG0290|consen 117 ATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA 194 (364)
T ss_pred hccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe
Confidence 6553 46999998753211 11111 224678999999998888899999999999999999873 3556778
Q ss_pred cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc---CccceEEEEecCCCCcEEEEEecC-CcEEEEEcc
Q 021121 148 HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA---HEFEILACDWNKYDDCLIASASVD-KSIKIWDVR 223 (317)
Q Consensus 148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~i~~~~~~~~~l~~~~~d-~~i~v~d~~ 223 (317)
|..+|..++|...+.++|++.+.||.+|+||+|..+....+.. ...+...++|++.+.+++|+-..| ..|.+.|+|
T Consensus 195 HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR 274 (364)
T KOG0290|consen 195 HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR 274 (364)
T ss_pred cCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec
Confidence 9999999999998788999999999999999998766554432 245788999999899999987666 469999999
Q ss_pred CCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccc-----eeeeeecccceeEeEEEEeccCCeEEE
Q 021121 224 NYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDA-----LVGRYDHHTEFAVGVDMSVLVEGLLAS 298 (317)
Q Consensus 224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~s 298 (317)
.+..++..+.+|.+.|+.++|.|.....|++++.|..+.+||+.+... ++..+. -++.|+.+.|++..+..++.
T Consensus 275 ~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai 353 (364)
T KOG0290|consen 275 VPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAI 353 (364)
T ss_pred CCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEE
Confidence 999999999999999999999999888899999999999999976431 122222 35679999999876778877
Q ss_pred eecCCcEEE
Q 021121 299 TGWDELVYV 307 (317)
Q Consensus 299 ~~~dg~i~~ 307 (317)
+.. .++.+
T Consensus 354 ~~~-kklei 361 (364)
T KOG0290|consen 354 CFG-KKLEI 361 (364)
T ss_pred Eec-CeeeE
Confidence 753 44443
No 115
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=6.2e-31 Score=200.50 Aligned_cols=242 Identities=20% Similarity=0.276 Sum_probs=208.0
Q ss_pred ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEc
Q 021121 57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTV 136 (317)
Q Consensus 57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~ 136 (317)
.+|.++|.|++=+|..-..+++|+.||.|++||+... .+...++.|.+.|..+++.. . .+++++.|.+|+.|-+
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR---~~~~~f~AH~G~V~Gi~v~~--~-~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR---ECIRTFKAHEGLVRGICVTQ--T-SFFTVGDDKTVKQWKI 136 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhh---hhhheeecccCceeeEEecc--c-ceEEecCCcceeeeec
Confidence 3799999999999986678999999999999999865 78889999999999999986 2 6899999999999998
Q ss_pred CCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCc
Q 021121 137 DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKS 216 (317)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~ 216 (317)
+. ...+++.+ .+.+..+.-+.. .+.+++++. .|.|||.+...++..+.-....+.++.|+|....+|++++.|+.
T Consensus 137 ~~-~p~~tilg-~s~~~gIdh~~~-~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 137 DG-PPLHTILG-KSVYLGIDHHRK-NSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred cC-Ccceeeec-cccccccccccc-cccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence 75 46666653 455777776665 778888876 48999999989999988777789999999988889999999999
Q ss_pred EEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeE
Q 021121 217 IKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLL 296 (317)
Q Consensus 217 i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 296 (317)
|.+||++.... +.... ....-+.|+|+|.+- .+++|++|..+..||++..+..+....+|.+.|.+++|+|. |+-+
T Consensus 212 IvLyD~R~~~P-l~KVi-~~mRTN~IswnPeaf-nF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfspt-G~Ef 287 (433)
T KOG0268|consen 212 IVLYDLRQASP-LKKVI-LTMRTNTICWNPEAF-NFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPT-GQEF 287 (433)
T ss_pred eEEEecccCCc-cceee-eeccccceecCcccc-ceeeccccccceehhhhhhcccchhhcccceeEEEeccCCC-cchh
Confidence 99999999764 54433 223457899999665 58899999999999999999899999999999999999999 8899
Q ss_pred EEeecCCcEEEEecCCC
Q 021121 297 ASTGWDELVYVWQQGMD 313 (317)
Q Consensus 297 ~s~~~dg~i~~w~~~~~ 313 (317)
++||.|.+|+||..+..
T Consensus 288 vsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 288 VSGSYDKSIRIFPVNHG 304 (433)
T ss_pred ccccccceEEEeecCCC
Confidence 99999999999998764
No 116
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=7.1e-29 Score=185.50 Aligned_cols=243 Identities=19% Similarity=0.277 Sum_probs=192.4
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD 137 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 137 (317)
.....|..+.|+|.+ ..|++++.||++++|++... .. ...-.|..++.+++|.++. .+++|+-||.|+.+|++
T Consensus 11 pP~d~IS~v~f~~~~-~~LLvssWDgslrlYdv~~~---~l-~~~~~~~~plL~c~F~d~~--~~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSS-SDLLVSSWDGSLRLYDVPAN---SL-KLKFKHGAPLLDCAFADES--TIVTGGLDGQVRRYDLN 83 (323)
T ss_pred CChhceeeEEEcCcC-CcEEEEeccCcEEEEeccch---hh-hhheecCCceeeeeccCCc--eEEEeccCceEEEEEec
Confidence 345789999999887 57777889999999998764 22 2233589999999999864 69999999999999999
Q ss_pred CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcE
Q 021121 138 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSI 217 (317)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i 217 (317)
+++.. .+..|..++.++.+++. ...+++|+.|++|++||.+.......+. ....|.++.. .++.|++|+.+..+
T Consensus 84 ~~~~~-~igth~~~i~ci~~~~~-~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v---~g~~LvVg~~~r~v 157 (323)
T KOG1036|consen 84 TGNED-QIGTHDEGIRCIEYSYE-VGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV---SGNRLVVGTSDRKV 157 (323)
T ss_pred CCcce-eeccCCCceEEEEeecc-CCeEEEcccCccEEEEeccccccccccc-cCceEEEEec---cCCEEEEeecCceE
Confidence 87654 44569999999999987 7788899999999999999755555554 3347888876 56788888999999
Q ss_pred EEEEccCCCccEEEE-ecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc---ceeeeeeccc---------ceeE
Q 021121 218 KIWDVRNYRVPIAVL-NGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED---ALVGRYDHHT---------EFAV 284 (317)
Q Consensus 218 ~v~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~---~~~~~~~~~~---------~~v~ 284 (317)
.+||+|+...+.+.. ..-+..++++++.|++.. +++++-||.|.+=.+...+ .....+.-|. -+|+
T Consensus 158 ~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eG-y~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVN 236 (323)
T KOG1036|consen 158 LIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEG-YVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVN 236 (323)
T ss_pred EEEEcccccchhhhccccceeEEEEEEEecCCCc-eEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEec
Confidence 999999987655332 234568999999998774 7788999998876555442 1222344443 3799
Q ss_pred eEEEEeccCCeEEEeecCCcEEEEecCCCCC
Q 021121 285 GVDMSVLVEGLLASTGWDELVYVWQQGMDPR 315 (317)
Q Consensus 285 ~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~ 315 (317)
+|+|+|- -+.|+|||.||.|.+||+...+|
T Consensus 237 ai~Fhp~-~~tfaTgGsDG~V~~Wd~~~rKr 266 (323)
T KOG1036|consen 237 AIAFHPI-HGTFATGGSDGIVNIWDLFNRKR 266 (323)
T ss_pred eeEeccc-cceEEecCCCceEEEccCcchhh
Confidence 9999998 78999999999999999987654
No 117
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.97 E-value=2.5e-29 Score=192.67 Aligned_cols=253 Identities=25% Similarity=0.430 Sum_probs=197.7
Q ss_pred eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCC------------Ccceeeeee-cCCCCeeEEEecC
Q 021121 4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAA------------PALTELVAF-DTADGVYDLAWSE 70 (317)
Q Consensus 4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~------------~~~~~~~~~-~~~~~v~~~~~~~ 70 (317)
..+...+..+.-++.++..++++-++ .|+|+||++...- ....++..+ .|...=+.++|||
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse------~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp 221 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSE------NGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSP 221 (440)
T ss_pred cccccccceeeecccCCcceeeeecc------cCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccc
Confidence 44666777777788656666676665 8999999986421 112233333 5777889999999
Q ss_pred CCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC---ceeEEeec
Q 021121 71 SHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP---TSVRTFKE 147 (317)
Q Consensus 71 ~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~ 147 (317)
-....|++|..-+.|++|...++.=..-...+.+|...|..++|+|.....|++|+-||+|+|||++.+ .++. .+.
T Consensus 222 ~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kA 300 (440)
T KOG0302|consen 222 IKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKA 300 (440)
T ss_pred ccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eec
Confidence 554578999888899999988752222334466799999999999998889999999999999999988 3333 378
Q ss_pred cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC---CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccC
Q 021121 148 HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM---GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRN 224 (317)
Q Consensus 148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~ 224 (317)
|.+.|+.|.|+.. ..+|++|+.||+++|||+|+- +++..++-|..+|+++.|+|.+...|++++.|..|.+||+.-
T Consensus 301 h~sDVNVISWnr~-~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 301 HNSDVNVISWNRR-EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred cCCceeeEEccCC-cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 9999999999998 559999999999999999864 567788999999999999998899999999999999999863
Q ss_pred CC---------------ccEEEEecC--CCceeEEEecCCCCeeEEeeecCCeEEEEe
Q 021121 225 YR---------------VPIAVLNGH--GYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265 (317)
Q Consensus 225 ~~---------------~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd 265 (317)
.. .|.+.+-.| +..+..+.|+++-+.++++.+.|| +.||.
T Consensus 380 E~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 380 EADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred cCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 21 122222234 346888999998888899999898 55553
No 118
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=6.4e-28 Score=191.57 Aligned_cols=281 Identities=15% Similarity=0.217 Sum_probs=219.4
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeee--cCCCCeeEEEecCCCCCeEEEEEcCC
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAF--DTADGVYDLAWSESHDSLLIAAVADG 83 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg 83 (317)
.+..|....|+|. +..++++.+ .|.+.+|++..+.. .+....+ ..+.-|.|++|.++|+ +++|..+|
T Consensus 199 sne~v~~a~FHPt-d~nliit~G-------k~H~~Fw~~~~~~l-~k~~~~fek~ekk~Vl~v~F~engd--viTgDS~G 267 (626)
T KOG2106|consen 199 SNEVVFLATFHPT-DPNLIITCG-------KGHLYFWTLRGGSL-VKRQGIFEKREKKFVLCVTFLENGD--VITGDSGG 267 (626)
T ss_pred ccceEEEEEeccC-CCcEEEEeC-------CceEEEEEccCCce-EEEeeccccccceEEEEEEEcCCCC--EEeecCCc
Confidence 3456788999998 455566665 68999999887652 2222222 2346799999999984 89999999
Q ss_pred eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc-----------------------
Q 021121 84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT----------------------- 140 (317)
Q Consensus 84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~----------------------- 140 (317)
.|.||+.... +..+....|.+.|.+++...+|. |++|+.|..|..||-.-.+
T Consensus 268 ~i~Iw~~~~~---~~~k~~~aH~ggv~~L~~lr~Gt--llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di 342 (626)
T KOG2106|consen 268 NILIWSKGTN---RISKQVHAHDGGVFSLCMLRDGT--LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDI 342 (626)
T ss_pred eEEEEeCCCc---eEEeEeeecCCceEEEEEecCcc--EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcE
Confidence 9999997544 44444458999999999999985 7889999999999832100
Q ss_pred -----------------eeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCC
Q 021121 141 -----------------SVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKY 203 (317)
Q Consensus 141 -----------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 203 (317)
......+|......++.+|+ .+.+++++.|+.+++|+ ..++..... ...+..|+.|+|
T Consensus 343 ~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps-~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp- 417 (626)
T KOG2106|consen 343 LVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPS-KNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP- 417 (626)
T ss_pred EEeeccceEEEeeecCCceEEEEecccceeeEEcCCC-hhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-
Confidence 00112357778899999999 88899999999999999 444444443 566889999999
Q ss_pred CCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeee-cccce
Q 021121 204 DDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYD-HHTEF 282 (317)
Q Consensus 204 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~ 282 (317)
.+ .++.|...|...+.|.++ +..+..... +.++++++|+|+|. +||.|+.|+.|.||.+........... .+..+
T Consensus 418 sg-~va~Gt~~G~w~V~d~e~-~~lv~~~~d-~~~ls~v~ysp~G~-~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ 493 (626)
T KOG2106|consen 418 SG-VVAVGTATGRWFVLDTET-QDLVTIHTD-NEQLSVVRYSPDGA-FLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSP 493 (626)
T ss_pred cc-eEEEeeccceEEEEeccc-ceeEEEEec-CCceEEEEEcCCCC-EEEEecCCCeEEEEEECCCCcEEEEeeeecCce
Confidence 77 999999999999999998 434555554 88999999999999 799999999999999987764444433 34479
Q ss_pred eEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121 283 AVGVDMSVLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 283 v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
|+.+.|++| +++|.+-+.|-.|..|.-..
T Consensus 494 ithLDwS~D-s~~~~~~S~d~eiLyW~~~~ 522 (626)
T KOG2106|consen 494 ITHLDWSSD-SQFLVSNSGDYEILYWKPSE 522 (626)
T ss_pred eEEeeecCC-CceEEeccCceEEEEEcccc
Confidence 999999999 89999999999999995443
No 119
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=3.7e-30 Score=192.77 Aligned_cols=249 Identities=19% Similarity=0.322 Sum_probs=203.8
Q ss_pred eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC
Q 021121 4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG 83 (317)
Q Consensus 4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 83 (317)
|+|-++|.++.|+| ...++++++. |+.|++||+.+... .+....+....+|.++.|+|.|+ +|++|....
T Consensus 169 YDH~devn~l~FHP--re~ILiS~sr------D~tvKlFDfsK~sa-KrA~K~~qd~~~vrsiSfHPsGe-fllvgTdHp 238 (430)
T KOG0640|consen 169 YDHVDEVNDLDFHP--RETILISGSR------DNTVKLFDFSKTSA-KRAFKVFQDTEPVRSISFHPSGE-FLLVGTDHP 238 (430)
T ss_pred hhccCcccceeecc--hhheEEeccC------CCeEEEEecccHHH-HHHHHHhhccceeeeEeecCCCc-eEEEecCCC
Confidence 56889999999999 7888888886 99999999987552 23344456677899999999995 999999999
Q ss_pred eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee-cc-ccceEEEEEecCC
Q 021121 84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK-EH-AYCVYNATWNPRH 161 (317)
Q Consensus 84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~-~~~v~~~~~~~~~ 161 (317)
.+++||+++-+.......-..|.+.|+++.+++.++ +.++++.||.|++||--+++++.++. .| ...|.+..|..+
T Consensus 239 ~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn- 316 (430)
T KOG0640|consen 239 TLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKN- 316 (430)
T ss_pred ceeEEeccceeEeeecCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccC-
Confidence 999999987643333334457999999999999998 99999999999999999999988875 34 457999999998
Q ss_pred CCeEEEEeCCCeEEEEeCCCCCceeeeccCc-----cceEEEEecCCCCcEEEEEe-cCCcEEEEEccCCCccEEEEecC
Q 021121 162 SDVFCSASGDCTLRIWDVREMGSTMIIPAHE-----FEILACDWNKYDDCLIASAS-VDKSIKIWDVRNYRVPIAVLNGH 235 (317)
Q Consensus 162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~i~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~ 235 (317)
++++++.+.|..+++|.+.+++.+..+.+.. .--+...|+. .+.+++.-. ..+.+.-||.|+.......-.+|
T Consensus 317 ~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNh-tEdyVl~pDEas~slcsWdaRtadr~~l~slgH 395 (430)
T KOG0640|consen 317 GKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNH-TEDYVLFPDEASNSLCSWDARTADRVALLSLGH 395 (430)
T ss_pred CeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcC-ccceEEccccccCceeeccccchhhhhhcccCC
Confidence 9999999999999999999999998886431 1123445665 555555443 45679999999987645556689
Q ss_pred CCceeEEEecCCCCeeEEeeecCCeEEEEec
Q 021121 236 GYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266 (317)
Q Consensus 236 ~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~ 266 (317)
++.++.+.-+|.++ .+++++.|..+++|--
T Consensus 396 n~a~R~i~HSP~~p-~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 396 NGAVRWIVHSPVEP-AFMTCSDDFRARFWYR 425 (430)
T ss_pred CCCceEEEeCCCCC-ceeeecccceeeeeee
Confidence 99999999999999 6999999999999964
No 120
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.6e-28 Score=183.06 Aligned_cols=239 Identities=17% Similarity=0.289 Sum_probs=192.6
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCC-CCeEEEEEcCCe
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESH-DSLLIAAVADGS 84 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~ 84 (317)
|..++++++.+- .++++++. |-+|+|||+..... + -....|.+.|+++.|.+.- .+.|++|+.||.
T Consensus 42 H~~sitavAVs~----~~~aSGss------DetI~IYDm~k~~q-l--g~ll~HagsitaL~F~~~~S~shLlS~sdDG~ 108 (362)
T KOG0294|consen 42 HAGSITALAVSG----PYVASGSS------DETIHIYDMRKRKQ-L--GILLSHAGSITALKFYPPLSKSHLLSGSDDGH 108 (362)
T ss_pred cccceeEEEecc----eeEeccCC------CCcEEEEeccchhh-h--cceeccccceEEEEecCCcchhheeeecCCCc
Confidence 667888888754 67777776 88999999987652 2 2233789999999999863 237999999999
Q ss_pred EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCe
Q 021121 85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDV 164 (317)
Q Consensus 85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 164 (317)
|.+|+... +..+..+++|.+.|+.++.+|.++ +.++.+.|+.++.||+-+|+.-..++- ....+.+.|+|. +.+
T Consensus 109 i~iw~~~~---W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~-Gd~ 182 (362)
T KOG0294|consen 109 IIIWRVGS---WELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQ-GDH 182 (362)
T ss_pred EEEEEcCC---eEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCC-CCE
Confidence 99999864 488899999999999999999998 888999999999999999877666553 233455999999 777
Q ss_pred EEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEe
Q 021121 165 FCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKF 244 (317)
Q Consensus 165 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~ 244 (317)
++.++.+ .|-+|.+.+.+....+. ....+.++.|. ++..+++|..|+.|.+||... ..+...+.+|...|..+.+
T Consensus 183 F~v~~~~-~i~i~q~d~A~v~~~i~-~~~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK~i~~ 257 (362)
T KOG0294|consen 183 FVVSGRN-KIDIYQLDNASVFREIE-NPKRILCATFL--DGSELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVKDIAS 257 (362)
T ss_pred EEEEecc-EEEEEecccHhHhhhhh-ccccceeeeec--CCceEEEecCCceEEEeccCC-CccceeeecchhheeeeEE
Confidence 7777665 58899988766555544 23456777776 678899999999999999988 4468899999999999984
Q ss_pred --cCCCCeeEEeeecCCeEEEEecccc
Q 021121 245 --SPHRRNLLASCSYDMTVCLWDFMVE 269 (317)
Q Consensus 245 --~~~~~~~l~~~~~d~~i~vwd~~~~ 269 (317)
.|++. +|++++.||.|+|||++..
T Consensus 258 ~~~~~~~-~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 258 YTNPEHE-YLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EecCCce-EEEEeccCceEEEEEcccc
Confidence 34454 8999999999999999876
No 121
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.97 E-value=6.1e-29 Score=202.38 Aligned_cols=291 Identities=20% Similarity=0.318 Sum_probs=214.9
Q ss_pred eeEEEEecCCC-CeEEEEEecccccccCceEEEEecCCCCCcce---eeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 10 GYSVKFSPFYE-SRLAVATAQNFGILGNGRVHVLDLSPAAPALT---ELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 10 v~~~~~~p~~~-~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
.++..|++... ..+++.+.+ +|.|.++|.......++ ......|...|.++.|.| ++..|++++.|.++
T Consensus 52 Pf~~sFs~~~n~eHiLavadE------~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~ 124 (720)
T KOG0321|consen 52 PFADSFSAAPNKEHILAVADE------DGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTI 124 (720)
T ss_pred CccccccCCCCccceEEEecC------CCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCcee
Confidence 35678887543 334444444 99999999876543211 223336999999999999 77899999999999
Q ss_pred EEEEeCCCCCCCCce--eeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc-----------------------
Q 021121 86 KIYDTALPPTANPIR--SLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT----------------------- 140 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~----------------------- 140 (317)
++||++.. .... .+.+|...|.+++|.|..+..|++|+.||.|.|||++...
T Consensus 125 r~Wdvk~s---~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpsk 201 (720)
T KOG0321|consen 125 RPWDVKTS---RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSK 201 (720)
T ss_pred eeeeeccc---eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCc
Confidence 99999875 4433 3789999999999999999999999999999999986432
Q ss_pred ----eeEEeeccccceEE---EEEecCCCCeEEEEeC-CCeEEEEeCCCCCcee--------eeccC---ccceEEEEec
Q 021121 141 ----SVRTFKEHAYCVYN---ATWNPRHSDVFCSASG-DCTLRIWDVREMGSTM--------IIPAH---EFEILACDWN 201 (317)
Q Consensus 141 ----~~~~~~~~~~~v~~---~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~--------~~~~~---~~~v~~i~~~ 201 (317)
.+.....+...|.+ +.+..| ...|++++. |+.|++||++...... .+..+ ...+.++..+
T Consensus 202 p~~kr~~k~kA~s~ti~ssvTvv~fkD-e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lD 280 (720)
T KOG0321|consen 202 PLKKRIRKWKAASNTIFSSVTVVLFKD-ESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILD 280 (720)
T ss_pred hhhccccccccccCceeeeeEEEEEec-cceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEec
Confidence 01111233333444 444445 677888777 9999999999753322 12222 2346777777
Q ss_pred CCCCcEEEEEecCCcEEEEEccCCCc-cEEEEecCCC--ceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeec
Q 021121 202 KYDDCLIASASVDKSIKIWDVRNYRV-PIAVLNGHGY--AVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH 278 (317)
Q Consensus 202 ~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~ 278 (317)
. .|.+|.+.+.|+.|+.|+++.... ++..+.++.. .-..-..+|++. ++++|+.|....+|.+.+.+.....+.+
T Consensus 281 s-sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~-~l~SgSsd~~ayiw~vs~~e~~~~~l~G 358 (720)
T KOG0321|consen 281 S-SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC-SLLSGSSDEQAYIWVVSSPEAPPALLLG 358 (720)
T ss_pred C-CCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc-eEeccCCCcceeeeeecCccCChhhhhC
Confidence 7 677777777799999999987643 3333433321 111234688998 6999999999999999999878888999
Q ss_pred ccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121 279 HTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 279 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
|...|++++|.|..-.-+++++.|-.+++|++..+
T Consensus 359 ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 359 HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred cceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 99999999999975667899999999999999543
No 122
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.97 E-value=2.9e-27 Score=191.92 Aligned_cols=263 Identities=12% Similarity=0.113 Sum_probs=188.0
Q ss_pred CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEe
Q 021121 36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN 115 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 115 (317)
++.|++||+.+.. .+..+.....+..++|+|++..++++++.++.|++||...+ +....+..+. .+..++|+
T Consensus 10 d~~v~~~d~~t~~----~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~-~~~~~~~~ 81 (300)
T TIGR03866 10 DNTISVIDTATLE----VTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATG---EVIGTLPSGP-DPELFALH 81 (300)
T ss_pred CCEEEEEECCCCc----eEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCC---cEEEeccCCC-CccEEEEC
Confidence 8999999997654 22233344557889999998544567778899999998765 3444444433 35678999
Q ss_pred cCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCC-eEEEEeCCCCCceeeeccCccc
Q 021121 116 PTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDC-TLRIWDVREMGSTMIIPAHEFE 194 (317)
Q Consensus 116 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~ 194 (317)
|+++.++++++.++.+++||+++.+.+..+.. ...+.+++|+|+ +.+++++..++ .+.+||.++++....... ...
T Consensus 82 ~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~d-g~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~ 158 (300)
T TIGR03866 82 PNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPD-GKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQR 158 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCC-CCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCC
Confidence 99883445556789999999998877776653 344788999998 78888877765 567789988766554432 334
Q ss_pred eEEEEecCCCCcEEE-EEecCCcEEEEEccCCCccEEEEecCC-------CceeEEEecCCCCeeEEeeecCCeEEEEec
Q 021121 195 ILACDWNKYDDCLIA-SASVDKSIKIWDVRNYRVPIAVLNGHG-------YAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266 (317)
Q Consensus 195 v~~i~~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~ 266 (317)
..+++|+| +++.++ ++..++.|++||+++.+. +..+..+. .....++|+|+++.++++.+.++.+.+||.
T Consensus 159 ~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~ 236 (300)
T TIGR03866 159 PRFAEFTA-DGKELWVSSEIGGTVSVIDVATRKV-IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDA 236 (300)
T ss_pred ccEEEECC-CCCEEEEEcCCCCEEEEEEcCccee-eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEEC
Confidence 57899999 777765 445689999999998653 33332111 123468899999964555566778999999
Q ss_pred ccccceeeeeecccceeEeEEEEeccCCeEEEe-ecCCcEEEEecCCCC
Q 021121 267 MVEDALVGRYDHHTEFAVGVDMSVLVEGLLAST-GWDELVYVWQQGMDP 314 (317)
Q Consensus 267 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~dg~i~~w~~~~~~ 314 (317)
++.+ +.... .+...+.+++|+|+ +++|+++ +.+|.|++||+....
T Consensus 237 ~~~~-~~~~~-~~~~~~~~~~~~~~-g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 237 KTYE-VLDYL-LVGQRVWQLAFTPD-EKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred CCCc-EEEEE-EeCCCcceEEECCC-CCEEEEEcCCCCeEEEEECCCCc
Confidence 8765 33333 23456899999999 6677665 579999999998754
No 123
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.3e-28 Score=180.66 Aligned_cols=206 Identities=16% Similarity=0.212 Sum_probs=188.4
Q ss_pred eeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCC
Q 021121 101 SLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180 (317)
Q Consensus 101 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 180 (317)
.+++|..+++.+.++.+|. +|++++.|....+|-..+|+.+.++.+|.+.|+++..+-+ ...+++|+.|.++++||..
T Consensus 5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~-s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWD-SKHLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCC-cceeeeccccceeEEEEcC
Confidence 3678999999999999998 9999999999999999899999999999999999999988 8899999999999999999
Q ss_pred CCCceeeeccCccceEEEEecCCCCcEEEEEecC-----CcEEEEEccCC------CccEEEEecCCCceeEEEecCCCC
Q 021121 181 EMGSTMIIPAHEFEILACDWNKYDDCLIASASVD-----KSIKIWDVRNY------RVPIAVLNGHGYAVRKVKFSPHRR 249 (317)
Q Consensus 181 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----~~i~v~d~~~~------~~~~~~~~~~~~~v~~~~~~~~~~ 249 (317)
+++.+..++ ...+|..+.|++ ++++++....+ +.|.++|++.. +.|...+..+.+.++.+.|.|.++
T Consensus 83 tGk~la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 83 TGKQLATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE 160 (327)
T ss_pred CCcEEEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence 999999987 567899999999 88888877643 57999999842 346777888889999999999999
Q ss_pred eeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121 250 NLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 250 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
+|++|..||.|.+||+++++..+...+.|...|+.|+++++ ..++++++.|.+-++||+.+
T Consensus 161 -~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d-~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 161 -TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRD-RTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred -EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCC-cceEEecccCccceeeeccc
Confidence 79999999999999999998888899999999999999999 89999999999999999875
No 124
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=5.5e-31 Score=217.02 Aligned_cols=247 Identities=24% Similarity=0.375 Sum_probs=217.8
Q ss_pred CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEe
Q 021121 36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN 115 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 115 (317)
.-.+++|+..... .|...+.++..-..+ ..+++|+.|..+.+|.+... ..+..+.+|..+|.++.|+
T Consensus 13 ~t~Lr~~~~~~~~---------~hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~kp---~~i~S~~~hespIeSl~f~ 79 (825)
T KOG0267|consen 13 ATKLRVWDTREFV---------AHSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGKP---NAITSLTGHESPIESLTFD 79 (825)
T ss_pred eeccccccchhhh---------hhhhhhceeeeeccc-eeeccCCCceeeccccccCC---chhheeeccCCcceeeecC
Confidence 5577788766432 466778888775554 68999999999999998765 6666789999999999999
Q ss_pred cCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccce
Q 021121 116 PTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEI 195 (317)
Q Consensus 116 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 195 (317)
+... +|++|+.+|+|++||+++.+.++++.+|...+.++.|+|. +.+++.|+.|+.+.+||.+...+...+.+|...+
T Consensus 80 ~~E~-LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~-~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv 157 (825)
T KOG0267|consen 80 TSER-LLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPY-GEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVV 157 (825)
T ss_pred cchh-hhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccc-eEEeccccccccceehhhhccCceeeecCCccee
Confidence 9987 9999999999999999999999999999999999999999 8899999999999999999999999999999999
Q ss_pred EEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeee
Q 021121 196 LACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGR 275 (317)
Q Consensus 196 ~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 275 (317)
..++|+| +|.+++.+++|..+++||...++. ...+..|...+..+.|+|..- ++++|+.|+++++||+++-+ ++..
T Consensus 158 ~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~-~~ef~~~e~~v~sle~hp~e~-Lla~Gs~d~tv~f~dletfe-~I~s 233 (825)
T KOG0267|consen 158 DVLRLSP-DGRWVASGGEDNTVKIWDLTAGKL-SKEFKSHEGKVQSLEFHPLEV-LLAPGSSDRTVRFWDLETFE-VISS 233 (825)
T ss_pred EEEeecC-CCceeeccCCcceeeeeccccccc-ccccccccccccccccCchhh-hhccCCCCceeeeeccceeE-Eeec
Confidence 9999999 999999999999999999998764 788899999999999999876 89999999999999999876 5666
Q ss_pred eecccceeEeEEEEeccCCeEEEeecC
Q 021121 276 YDHHTEFAVGVDMSVLVEGLLASTGWD 302 (317)
Q Consensus 276 ~~~~~~~v~~~~~~~~~~~~l~s~~~d 302 (317)
.......|.+..|+|+ +..+++|...
T Consensus 234 ~~~~~~~v~~~~fn~~-~~~~~~G~q~ 259 (825)
T KOG0267|consen 234 GKPETDGVRSLAFNPD-GKIVLSGEQI 259 (825)
T ss_pred cCCccCCceeeeecCC-ceeeecCchh
Confidence 6666888999999998 6777776544
No 125
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.2e-29 Score=193.24 Aligned_cols=255 Identities=20% Similarity=0.308 Sum_probs=201.4
Q ss_pred eEEEEecC-----CCCeEEEEEecccccccCceEEEEecCCCCCcceee------------------eeecCCCCeeEEE
Q 021121 11 YSVKFSPF-----YESRLAVATAQNFGILGNGRVHVLDLSPAAPALTEL------------------VAFDTADGVYDLA 67 (317)
Q Consensus 11 ~~~~~~p~-----~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~------------------~~~~~~~~v~~~~ 67 (317)
.|++|... ..+.+++.+.. +..|.|||+.-....+..+ ...+|...|.+++
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtm------dp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls 250 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTM------DPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALS 250 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEecc------CceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHH
Confidence 45555442 23445555544 7799999997433211111 1125778889999
Q ss_pred ecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeec
Q 021121 68 WSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKE 147 (317)
Q Consensus 68 ~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 147 (317)
|+..-.+.||+|+.|.+|.+||+.++ ++...+..|...|.++.|+|.....|++|+.|++|.+.|.+........-.
T Consensus 251 ~n~~~~nVLaSgsaD~TV~lWD~~~g---~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk 327 (463)
T KOG0270|consen 251 WNRNFRNVLASGSADKTVKLWDVDTG---KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK 327 (463)
T ss_pred hccccceeEEecCCCceEEEEEcCCC---CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE
Confidence 99887789999999999999999987 788888889999999999999888999999999999999985433332223
Q ss_pred cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC-CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCC
Q 021121 148 HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM-GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR 226 (317)
Q Consensus 148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 226 (317)
..+.|..++|.|.....+++++.||.|+-+|+|+. +++.+++.|..+|.++++++....++++++.|+.+++|++....
T Consensus 328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence 56789999999998899999999999999999987 88999999999999999999889999999999999999987644
Q ss_pred ccEEE-EecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceee
Q 021121 227 VPIAV-LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVG 274 (317)
Q Consensus 227 ~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 274 (317)
..... ..-.-+...|.++.|+-..+++.|+..+.++|||+.+.....+
T Consensus 408 ~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 408 PKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRK 456 (463)
T ss_pred CcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHH
Confidence 21111 1111124678888898887899999999999999988764443
No 126
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=5.7e-30 Score=198.21 Aligned_cols=244 Identities=20% Similarity=0.265 Sum_probs=204.7
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD 137 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 137 (317)
.|.+.+..+.|-++. ..|++|+.|..|++|+.... ......++.+..++|+.+.|.+++. .+++++.|+.+++|++.
T Consensus 173 ~h~gev~~v~~l~~s-dtlatgg~Dr~Ik~W~v~~~-k~~~~~tLaGs~g~it~~d~d~~~~-~~iAas~d~~~r~Wnvd 249 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNS-DTLATGGSDRIIKLWNVLGE-KSELISTLAGSLGNITSIDFDSDNK-HVIAASNDKNLRLWNVD 249 (459)
T ss_pred ccccccceeEEccCc-chhhhcchhhhhhhhhcccc-hhhhhhhhhccCCCcceeeecCCCc-eEEeecCCCceeeeecc
Confidence 478889999999986 48999999999999998765 3456777888889999999999998 88899999999999999
Q ss_pred CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcE
Q 021121 138 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSI 217 (317)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i 217 (317)
..+...++.+|++.|+++.|... ...+++|+.|.+|++||+....+..++- ..+.+..|+.+ ...+++|..|++|
T Consensus 250 ~~r~~~TLsGHtdkVt~ak~~~~-~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~---~~~~~SgH~Dkkv 324 (459)
T KOG0288|consen 250 SLRLRHTLSGHTDKVTAAKFKLS-HSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS---ISDVISGHFDKKV 324 (459)
T ss_pred chhhhhhhcccccceeeehhhcc-ccceeeccccchhhhhhhhhhheecccc-ccccccceEec---ceeeeecccccce
Confidence 99999999999999999999987 4448899999999999999877766654 33445666654 4578999999999
Q ss_pred EEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecc----cceeEeEEEEeccC
Q 021121 218 KIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH----TEFAVGVDMSVLVE 293 (317)
Q Consensus 218 ~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~ 293 (317)
++||.+.... ......++ .|+++..++++.. |.+++.|.++.+.|+++.+ +...+... ....+.+.|||+ +
T Consensus 325 RfwD~Rs~~~-~~sv~~gg-~vtSl~ls~~g~~-lLsssRDdtl~viDlRt~e-I~~~~sA~g~k~asDwtrvvfSpd-~ 399 (459)
T KOG0288|consen 325 RFWDIRSADK-TRSVPLGG-RVTSLDLSMDGLE-LLSSSRDDTLKVIDLRTKE-IRQTFSAEGFKCASDWTRVVFSPD-G 399 (459)
T ss_pred EEEeccCCce-eeEeecCc-ceeeEeeccCCeE-EeeecCCCceeeeeccccc-EEEEeeccccccccccceeEECCC-C
Confidence 9999998764 66666555 8999999999996 6666999999999999876 33333321 234889999999 8
Q ss_pred CeEEEeecCCcEEEEecCCCC
Q 021121 294 GLLASTGWDELVYVWQQGMDP 314 (317)
Q Consensus 294 ~~l~s~~~dg~i~~w~~~~~~ 314 (317)
.++++||.||.|+||++.+++
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgK 420 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGK 420 (459)
T ss_pred ceeeeccCCCcEEEEEccCce
Confidence 999999999999999998753
No 127
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.6e-27 Score=201.63 Aligned_cols=267 Identities=12% Similarity=0.230 Sum_probs=212.6
Q ss_pred eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC
Q 021121 4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG 83 (317)
Q Consensus 4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 83 (317)
+.|...-+.++|.| ++.++++++. ||.|++|+..........+. .+...|.+++-. + ..|++|+.++
T Consensus 10 yaht~G~t~i~~d~--~gefi~tcgs------dg~ir~~~~~sd~e~P~ti~--~~g~~v~~ia~~--s-~~f~~~s~~~ 76 (933)
T KOG1274|consen 10 YAHTGGLTLICYDP--DGEFICTCGS------DGDIRKWKTNSDEEEPETID--ISGELVSSIACY--S-NHFLTGSEQN 76 (933)
T ss_pred hhccCceEEEEEcC--CCCEEEEecC------CCceEEeecCCcccCCchhh--ccCceeEEEeec--c-cceEEeeccc
Confidence 55777788999999 6778888886 99999999876632222222 156667777655 3 4899999999
Q ss_pred eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCC
Q 021121 84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSD 163 (317)
Q Consensus 84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 163 (317)
+|.+|.+..+ ..-..+....-++.+++|+.+|. +++.|+.|-.|++.++.+....+.+++|.++|.++.|+|. ++
T Consensus 77 tv~~y~fps~---~~~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~-~~ 151 (933)
T KOG1274|consen 77 TVLRYKFPSG---EEDTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPK-GN 151 (933)
T ss_pred eEEEeeCCCC---CccceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCC-CC
Confidence 9999999877 33333444567899999999998 9999999999999999999999999999999999999999 99
Q ss_pred eEEEEeCCCeEEEEeCCCCCceeeeccC--------ccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec-
Q 021121 164 VFCSASGDCTLRIWDVREMGSTMIIPAH--------EFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG- 234 (317)
Q Consensus 164 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~- 234 (317)
+|++.+-||.|++||++++....++.+- ...+..++|+| ++..++....|+.|++|+.............
T Consensus 152 fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~ 230 (933)
T KOG1274|consen 152 FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL 230 (933)
T ss_pred EEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCCceeheeecccc
Confidence 9999999999999999998776665421 34567899999 6666666777999999999887753333222
Q ss_pred CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeE
Q 021121 235 HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLL 296 (317)
Q Consensus 235 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 296 (317)
+...+..++|+|+|+ |||+++.||.|.|||+.+-+. ......|.+++|.|+ .+.+
T Consensus 231 ~ss~~~~~~wsPnG~-YiAAs~~~g~I~vWnv~t~~~-----~~~~~~Vc~~aw~p~-~n~i 285 (933)
T KOG1274|consen 231 SSSKFSDLQWSPNGK-YIAASTLDGQILVWNVDTHER-----HEFKRAVCCEAWKPN-ANAI 285 (933)
T ss_pred cccceEEEEEcCCCc-EEeeeccCCcEEEEecccchh-----ccccceeEEEecCCC-CCee
Confidence 344589999999999 799999999999999987331 233567999999998 4433
No 128
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=1.4e-28 Score=202.04 Aligned_cols=238 Identities=21% Similarity=0.369 Sum_probs=203.9
Q ss_pred ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEE-EEEecCCCCEEEEEcCCCEEEEEE
Q 021121 57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHS-ADYNPTRRDSFITSSWDDTVKLWT 135 (317)
Q Consensus 57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~v~iwd 135 (317)
.+|...|..++..+. ..+++++.||++++|+-..+ .......+.+|.+-|.. +++.+..+..+++|+.|.+|.+|.
T Consensus 11 ~gH~~DVr~v~~~~~--~~i~s~sRd~t~~vw~~~~~-~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~ 87 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDG--VCIISGSRDGTVKVWAKKGK-QYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFK 87 (745)
T ss_pred ccCccchheeEecCC--eEEeecCCCCceeeeeccCc-ccccceecccCcceeeccceeccccCcceEeecccceEEEEe
Confidence 378889999998865 38999999999999996543 34444567778888877 888764444699999999999999
Q ss_pred cCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCC
Q 021121 136 VDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDK 215 (317)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~ 215 (317)
..+..++..+++|+..|.++....+ +. +++|+.|.++++|-.. +....+++|...|.++..-| ++ .+++|+.|.
T Consensus 88 ~~~~~P~~~LkgH~snVC~ls~~~~-~~-~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~-e~-~~vTgsaDK 161 (745)
T KOG0301|consen 88 LSQAEPLYTLKGHKSNVCSLSIGED-GT-LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLP-EN-TYVTGSADK 161 (745)
T ss_pred cCCCCchhhhhccccceeeeecCCc-Cc-eEecccccceEEecch--hhhcccCCcchheeeeeecC-CC-cEEeccCcc
Confidence 9999999999999999999997765 44 8899999999999754 55666899999999999998 55 899999999
Q ss_pred cEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCe
Q 021121 216 SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGL 295 (317)
Q Consensus 216 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 295 (317)
+|++|.- ...+.++.+|...|+.+++-|++. +++++.||.|++|++ +++ ++.++.+|...|++++..++ +..
T Consensus 162 tIklWk~---~~~l~tf~gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~-~ge-~l~~~~ghtn~vYsis~~~~-~~~ 233 (745)
T KOG0301|consen 162 TIKLWKG---GTLLKTFSGHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDL-DGE-VLLEMHGHTNFVYSISMALS-DGL 233 (745)
T ss_pred eeeeccC---CchhhhhccchhheeeeEEecCCC--eEeecCCceEEEEec-cCc-eeeeeeccceEEEEEEecCC-CCe
Confidence 9999975 335889999999999999999875 889999999999998 454 67899999999999996666 789
Q ss_pred EEEeecCCcEEEEecC
Q 021121 296 LASTGWDELVYVWQQG 311 (317)
Q Consensus 296 l~s~~~dg~i~~w~~~ 311 (317)
++++|.|++++||+..
T Consensus 234 Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 234 IVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEEecCCceEEEeecC
Confidence 9999999999999976
No 129
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=9.9e-28 Score=200.83 Aligned_cols=290 Identities=20% Similarity=0.249 Sum_probs=228.9
Q ss_pred CceecC-cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEE
Q 021121 2 PVFKTP-FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAV 80 (317)
Q Consensus 2 ~~~~~~-~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 80 (317)
.+|+++ .+|++++|.-|+...+ +++.. .|.+-+||++... +.....-.|.+.|....|.|.. ..+++++
T Consensus 238 ~sFk~d~g~VtslSFrtDG~p~l-as~~~------~G~m~~wDLe~kk--l~~v~~nah~~sv~~~~fl~~e-pVl~ta~ 307 (910)
T KOG1539|consen 238 MSFKQDWGRVTSLSFRTDGNPLL-ASGRS------NGDMAFWDLEKKK--LINVTRNAHYGSVTGATFLPGE-PVLVTAG 307 (910)
T ss_pred EEEEccccceeEEEeccCCCeeE-EeccC------CceEEEEEcCCCe--eeeeeeccccCCcccceecCCC-ceEeecc
Confidence 467886 8999999999644443 33332 7999999998775 3333333577788888888865 5888888
Q ss_pred cCCeEEEEEeCCCC-----------------------------------------------------C------------
Q 021121 81 ADGSVKIYDTALPP-----------------------------------------------------T------------ 95 (317)
Q Consensus 81 ~dg~i~v~~~~~~~-----------------------------------------------------~------------ 95 (317)
.|+.+++|-.+.+. .
T Consensus 308 ~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~ 387 (910)
T KOG1539|consen 308 ADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNV 387 (910)
T ss_pred CCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccc
Confidence 88888877555210 0
Q ss_pred -------CCCc--------------------------------------ee-----eccCCcceEEEEEecCCCCEEEEE
Q 021121 96 -------ANPI--------------------------------------RS-----LHEHTREVHSADYNPTRRDSFITS 125 (317)
Q Consensus 96 -------~~~~--------------------------------------~~-----~~~~~~~v~~~~~~~~~~~~l~~~ 125 (317)
..++ .. ++.....+++++.++-|+ +.+.|
T Consensus 388 ~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN-F~~IG 466 (910)
T KOG1539|consen 388 FSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN-FVFIG 466 (910)
T ss_pred cchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc-eEEEe
Confidence 0000 00 011225678888888887 88999
Q ss_pred cCCCEEEEEEcCCCceeEEe---eccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecC
Q 021121 126 SWDDTVKLWTVDRPTSVRTF---KEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNK 202 (317)
Q Consensus 126 ~~dg~v~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 202 (317)
...|.|-+|++++|-....+ ..|.++|+.++.... ++.+++++.+|.+.+||..+...+..+. ....+.++..+.
T Consensus 467 ~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~-n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr 544 (910)
T KOG1539|consen 467 YSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGT-NRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHR 544 (910)
T ss_pred ccCCeEEEEEcccCeeecccccCccccCceeEEEecCC-CceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeee
Confidence 99999999999999888887 579999999999887 7889999999999999999887777665 456788888888
Q ss_pred CCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccce
Q 021121 203 YDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEF 282 (317)
Q Consensus 203 ~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 282 (317)
...+++.+..|-.|+++|..+.+ .++.+.+|...|+.++|||+|+ +|++++.|++|++||+.++. ++-.+ .-..+
T Consensus 545 -~s~l~a~~~ddf~I~vvD~~t~k-vvR~f~gh~nritd~~FS~Dgr-WlisasmD~tIr~wDlpt~~-lID~~-~vd~~ 619 (910)
T KOG1539|consen 545 -VSDLLAIALDDFSIRVVDVVTRK-VVREFWGHGNRITDMTFSPDGR-WLISASMDSTIRTWDLPTGT-LIDGL-LVDSP 619 (910)
T ss_pred -hhhhhhhhcCceeEEEEEchhhh-hhHHhhccccceeeeEeCCCCc-EEEEeecCCcEEEEeccCcc-eeeeE-ecCCc
Confidence 78889999999999999999865 4888999999999999999999 79999999999999999987 33333 23577
Q ss_pred eEeEEEEeccCCeEEEeecC-CcEEEEec
Q 021121 283 AVGVDMSVLVEGLLASTGWD-ELVYVWQQ 310 (317)
Q Consensus 283 v~~~~~~~~~~~~l~s~~~d-g~i~~w~~ 310 (317)
.+.+.|+|+ +++|||...| .-|++|--
T Consensus 620 ~~sls~SPn-gD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 620 CTSLSFSPN-GDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred ceeeEECCC-CCEEEEEEecCceEEEEEc
Confidence 899999999 8999999988 67999963
No 130
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.9e-27 Score=177.84 Aligned_cols=253 Identities=23% Similarity=0.342 Sum_probs=196.4
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCC-CCCCCceeeccCCcceEEEEEe-cCCCCEEEEEcCCCEEEEEE
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALP-PTANPIRSLHEHTREVHSADYN-PTRRDSFITSSWDDTVKLWT 135 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~-~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~v~iwd 135 (317)
+|..-|.++.|.+.| +.+|+|+.|++|+|||...+ .........+.|.+.|..+.|. |.-.+.+++++.|+++.||.
T Consensus 11 ~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred CCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 677889999999998 69999999999999996543 3445566778999999999995 44344999999999999997
Q ss_pred cCCC---------ceeEEeeccccceEEEEEecCC-CCeEEEEeCCCeEEEEeCCCCCcee------eec-------cCc
Q 021121 136 VDRP---------TSVRTFKEHAYCVYNATWNPRH-SDVFCSASGDCTLRIWDVREMGSTM------IIP-------AHE 192 (317)
Q Consensus 136 ~~~~---------~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~------~~~-------~~~ 192 (317)
-... ....++....+.|+.+.|.|.. +-.+++++.||.+|||+.-..-.+. .+. .+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 5211 1233555667889999999963 4578899999999999876432221 122 355
Q ss_pred cceEEEEecCC--CCcEEEEEecC-----CcEEEEEccCCC---ccEEEEecCCCceeEEEecCCCC---eeEEeeecCC
Q 021121 193 FEILACDWNKY--DDCLIASASVD-----KSIKIWDVRNYR---VPIAVLNGHGYAVRKVKFSPHRR---NLLASCSYDM 259 (317)
Q Consensus 193 ~~v~~i~~~~~--~~~~l~~~~~d-----~~i~v~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~d~ 259 (317)
.+..|+.|+|. ...+|+.|+.+ +.++||...... ..+..+.+|..+|+.++|.|+-. ++||+++.||
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 67789999873 35678888766 478888776543 12455778999999999999642 3799999999
Q ss_pred eEEEEeccccc-------------------ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121 260 TVCLWDFMVED-------------------ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 260 ~i~vwd~~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
|+||.+.... ..+..+.+|.+.|..+.|+-. +..|++.|.||.||+|+....
T Consensus 250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt-GtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT-GTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee-eeEEeecCCCceeeehhhhhh
Confidence 9999987411 345678899999999999998 889999999999999987643
No 131
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.4e-28 Score=178.32 Aligned_cols=253 Identities=20% Similarity=0.275 Sum_probs=198.4
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecC--CCCCeEEEEEcCC
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSE--SHDSLLIAAVADG 83 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg 83 (317)
|.+.|..+...-. ..+++.+++ |+.|+|+...+..+........+|.++|..++|.. .| .+||+++.||
T Consensus 10 H~D~IHda~lDyy-gkrlATcsS-------D~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDg 80 (299)
T KOG1332|consen 10 HEDMIHDAQLDYY-GKRLATCSS-------DGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFG-TILASCSYDG 80 (299)
T ss_pred hhhhhhHhhhhhh-cceeeeecC-------CccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccC-cEeeEeecCc
Confidence 5566666665552 345555544 99999999988775333444458999999999975 56 6999999999
Q ss_pred eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCC-CEEEEEcCCCEEEEEEcCCC---ceeEEeeccccceEEEEEec
Q 021121 84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR-DSFITSSWDDTVKLWTVDRP---TSVRTFKEHAYCVYNATWNP 159 (317)
Q Consensus 84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~ 159 (317)
.|.||.-..+ ..........|...|++++|.|.+- ..|++++.||.|.+.+.++. ...+....|.-.|++++|.|
T Consensus 81 kVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswap 159 (299)
T KOG1332|consen 81 KVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAP 159 (299)
T ss_pred eEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecC
Confidence 9999997765 6666667788999999999998742 37889999999999998765 23344567899999999998
Q ss_pred CC-------------CCeEEEEeCCCeEEEEeCCCC--CceeeeccCccceEEEEecCCC---CcEEEEEecCCcEEEEE
Q 021121 160 RH-------------SDVFCSASGDCTLRIWDVREM--GSTMIIPAHEFEILACDWNKYD---DCLIASASVDKSIKIWD 221 (317)
Q Consensus 160 ~~-------------~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~i~~~~~~---~~~l~~~~~d~~i~v~d 221 (317)
.. .+.|++|+.|..|+||+..++ +....+.+|...|+.++|.|.. ...|+++++||++.||.
T Consensus 160 a~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 160 ASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred cCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 51 146999999999999999875 3345588999999999999943 35899999999999998
Q ss_pred ccCCCc--cEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccc
Q 021121 222 VRNYRV--PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE 269 (317)
Q Consensus 222 ~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~ 269 (317)
.+.... ....+......+..+.||+.|. +|+.++.|+.+.+|.-...
T Consensus 240 ~~~e~e~wk~tll~~f~~~~w~vSWS~sGn-~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 240 KDEEYEPWKKTLLEEFPDVVWRVSWSLSGN-ILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred ecCccCcccccccccCCcceEEEEEecccc-EEEEecCCcEEEEEEeCCC
Confidence 774322 2233455677899999999998 8999999999999975443
No 132
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=1.2e-27 Score=200.38 Aligned_cols=288 Identities=19% Similarity=0.229 Sum_probs=229.7
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCC-CCeeEEEecCCCCCeEEEEEcCCe
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTA-DGVYDLAWSESHDSLLIAAVADGS 84 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~ 84 (317)
+...|+++.=+|. -+.++++.. +|+|.++++..++ .+..+.+. +.|+.++|..||..++++|+..|.
T Consensus 201 ~~s~IT~ieqsPa-LDVVaiG~~-------~G~ViifNlK~dk----il~sFk~d~g~VtslSFrtDG~p~las~~~~G~ 268 (910)
T KOG1539|consen 201 FFSRITAIEQSPA-LDVVAIGLE-------NGTVIIFNLKFDK----ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGD 268 (910)
T ss_pred cccceeEeccCCc-ceEEEEecc-------CceEEEEEcccCc----EEEEEEccccceeEEEeccCCCeeEEeccCCce
Confidence 4578999999994 345555554 9999999999876 45566675 899999999999999999999999
Q ss_pred EEEEEeCCCCCCCCceee-ccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC----ceeEEeeccccceEEEEEec
Q 021121 85 VKIYDTALPPTANPIRSL-HEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP----TSVRTFKEHAYCVYNATWNP 159 (317)
Q Consensus 85 i~v~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~ 159 (317)
+.+||++.. +.+... ..|.+.|....|.|..+ .+++++.|..+++|-.+++ +.++.-.+|..+..++.|.-
T Consensus 269 m~~wDLe~k---kl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~ 344 (910)
T KOG1539|consen 269 MAFWDLEKK---KLINVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYG 344 (910)
T ss_pred EEEEEcCCC---eeeeeeeccccCCcccceecCCCc-eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeec
Confidence 999999865 444444 47889999999999877 9999999999998866644 44555568999999999986
Q ss_pred CCCCeEEEEeCCCeEEEEeCCC----------------------------------------------------------
Q 021121 160 RHSDVFCSASGDCTLRIWDVRE---------------------------------------------------------- 181 (317)
Q Consensus 160 ~~~~~l~~~~~dg~i~i~d~~~---------------------------------------------------------- 181 (317)
..+..+.+++.|++++.+++..
T Consensus 345 ~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~ 424 (910)
T KOG1539|consen 345 SQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSA 424 (910)
T ss_pred cCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceE
Confidence 5578888888888777776531
Q ss_pred -------CCc-eeeec-----cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEE---ecCCCceeEEEec
Q 021121 182 -------MGS-TMIIP-----AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVL---NGHGYAVRKVKFS 245 (317)
Q Consensus 182 -------~~~-~~~~~-----~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~v~~~~~~ 245 (317)
... ...+. .....+++++.++ .|++.+.|...|.|-+|+++++-. ...+ ..|..+|+.++..
T Consensus 425 ~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~-r~sf~~~~ah~~~V~gla~D 502 (910)
T KOG1539|consen 425 YTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIH-RKSFGDSPAHKGEVTGLAVD 502 (910)
T ss_pred EEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCee-ecccccCccccCceeEEEec
Confidence 000 00000 1124578888998 899999999999999999998754 4444 5799999999999
Q ss_pred CCCCeeEEeeecCCeEEEEeccccc----------------------------------------ceeeeeecccceeEe
Q 021121 246 PHRRNLLASCSYDMTVCLWDFMVED----------------------------------------ALVGRYDHHTEFAVG 285 (317)
Q Consensus 246 ~~~~~~l~~~~~d~~i~vwd~~~~~----------------------------------------~~~~~~~~~~~~v~~ 285 (317)
..++ ++++++.+|.+++||..... .+++.+.+|...|++
T Consensus 503 ~~n~-~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd 581 (910)
T KOG1539|consen 503 GTNR-LLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITD 581 (910)
T ss_pred CCCc-eEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceee
Confidence 8887 79999999999999987532 233566789999999
Q ss_pred EEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121 286 VDMSVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 286 ~~~~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
++|||+ ++.|++++.|++|++||+.+.
T Consensus 582 ~~FS~D-grWlisasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 582 MTFSPD-GRWLISASMDSTIRTWDLPTG 608 (910)
T ss_pred eEeCCC-CcEEEEeecCCcEEEEeccCc
Confidence 999999 899999999999999999875
No 133
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=4.7e-28 Score=196.01 Aligned_cols=285 Identities=18% Similarity=0.207 Sum_probs=230.0
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
|.+.|.+++..| .+..+++++. ||+|+||.+.++. .+......+.|.|++|+|.+...+++......+
T Consensus 399 Htg~Vr~iSvdp--~G~wlasGsd------DGtvriWEi~TgR----cvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~ 466 (733)
T KOG0650|consen 399 HTGLVRSISVDP--SGEWLASGSD------DGTVRIWEIATGR----CVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECV 466 (733)
T ss_pred cCCeEEEEEecC--CcceeeecCC------CCcEEEEEeecce----EEEEEeecceeEEEEecCCCCceeEEEEecCce
Confidence 788999999999 8999999987 9999999999875 455556777899999999876655555555555
Q ss_pred EEEEeCCCC----------------------------------CCCCceeeccCCcceEEEEEecCCCCEEEEEcCC---
Q 021121 86 KIYDTALPP----------------------------------TANPIRSLHEHTREVHSADYNPTRRDSFITSSWD--- 128 (317)
Q Consensus 86 ~v~~~~~~~----------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--- 128 (317)
.|.+..-+. ...-++....|..+|..+.|+..|. +|++...+
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD-YlatV~~~~~~ 545 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD-YLATVMPDSGN 545 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc-eEEEeccCCCc
Confidence 555433220 0001123345788999999999998 88887653
Q ss_pred CEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEE
Q 021121 129 DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLI 208 (317)
Q Consensus 129 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 208 (317)
..|.|.++.......-|+...+.|.++.|+|. ..+|++++ ...|++||+...+.+..+......|.+++.+| .|..|
T Consensus 546 ~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs-~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnl 622 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPS-KPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNL 622 (733)
T ss_pred ceEEEEecccccccCchhhcCCceeEEEecCC-CceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeE
Confidence 57999999887766677667788999999998 56665655 45799999998888888777778899999999 89999
Q ss_pred EEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccc------cc--ceeeeeeccc
Q 021121 209 ASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV------ED--ALVGRYDHHT 280 (317)
Q Consensus 209 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~------~~--~~~~~~~~~~ 280 (317)
+.|+.|+.+..||+.-...+.+.+.-|...+++++|++.-+ ++++|+.||++.|+--.- .- .++..+.+|.
T Consensus 623 i~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~ 701 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE 701 (733)
T ss_pred EEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce
Confidence 99999999999999988888999999999999999999988 899999999999884221 11 3456777887
Q ss_pred ce----eEeEEEEeccCCeEEEeecCCcEEEE
Q 021121 281 EF----AVGVDMSVLVEGLLASTGWDELVYVW 308 (317)
Q Consensus 281 ~~----v~~~~~~~~~~~~l~s~~~dg~i~~w 308 (317)
.. |....|+|. .-.|+++|.||+|++|
T Consensus 702 ~~~~~gVLd~~wHP~-qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 702 KTNDLGVLDTIWHPR-QPWLFSAGADGTIRLF 732 (733)
T ss_pred eecccceEeecccCC-CceEEecCCCceEEee
Confidence 65 889999998 7899999999999998
No 134
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=6.9e-27 Score=185.73 Aligned_cols=288 Identities=15% Similarity=0.176 Sum_probs=224.6
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
....|.+++||+.+.+.++++.... .+..+.+||.+.+.. ..++. ..++.|....|+|.+++++++.+ .|.+
T Consensus 153 f~~GV~~vaFsk~~~G~~l~~vD~s----~~h~lSVWdWqk~~~-~~~vk--~sne~v~~a~FHPtd~nliit~G-k~H~ 224 (626)
T KOG2106|consen 153 FDRGVTCVAFSKINGGSLLCAVDDS----NPHMLSVWDWQKKAK-LGPVK--TSNEVVFLATFHPTDPNLIITCG-KGHL 224 (626)
T ss_pred ccccceeeeecccCCCceEEEecCC----Cccccchhhchhhhc-cCcce--eccceEEEEEeccCCCcEEEEeC-CceE
Confidence 3457899999998888888887632 256789999987652 22232 35677999999999988888876 5789
Q ss_pred EEEEeCCCCCCCCceeeccC-CcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCe
Q 021121 86 KIYDTALPPTANPIRSLHEH-TREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDV 164 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 164 (317)
..|+.+.+.-.+....++.+ +..|.|++|.++|. +++|..+|.|.||+..+.+..+....|.+.|.+++...+ +.+
T Consensus 225 ~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd--viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~-Gtl 301 (626)
T KOG2106|consen 225 YFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD--VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRD-GTL 301 (626)
T ss_pred EEEEccCCceEEEeeccccccceEEEEEEEcCCCC--EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecC-ccE
Confidence 99998876433334444433 46799999999986 999999999999999888877777799999999999987 655
Q ss_pred EEEEeCCCeEEEEeCCCCC-----------ce-----------------------------eeeccCccceEEEEecCCC
Q 021121 165 FCSASGDCTLRIWDVREMG-----------ST-----------------------------MIIPAHEFEILACDWNKYD 204 (317)
Q Consensus 165 l~~~~~dg~i~i~d~~~~~-----------~~-----------------------------~~~~~~~~~v~~i~~~~~~ 204 (317)
+ +|+.|..|..||-.-.+ .+ ....+|......++.+| +
T Consensus 302 l-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s 379 (626)
T KOG2106|consen 302 L-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-S 379 (626)
T ss_pred e-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-C
Confidence 5 69999999999932100 00 11124566678888999 8
Q ss_pred CcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeE
Q 021121 205 DCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAV 284 (317)
Q Consensus 205 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~ 284 (317)
.+++++++.|+.+++|+ ..+ +.... .-..++.++.|+|.| .++.|...|...+.|.++.. ++..... ..+++
T Consensus 380 ~~q~~T~gqdk~v~lW~--~~k-~~wt~-~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~-lv~~~~d-~~~ls 451 (626)
T KOG2106|consen 380 KNQLLTCGQDKHVRLWN--DHK-LEWTK-IIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQD-LVTIHTD-NEQLS 451 (626)
T ss_pred hhheeeccCcceEEEcc--CCc-eeEEE-EecCceeEeeccCcc--eEEEeeccceEEEEecccce-eEEEEec-CCceE
Confidence 88999999999999999 223 23332 245678999999999 59999999999999999854 4444444 88999
Q ss_pred eEEEEeccCCeEEEeecCCcEEEEecCCCCC
Q 021121 285 GVDMSVLVEGLLASTGWDELVYVWQQGMDPR 315 (317)
Q Consensus 285 ~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~ 315 (317)
.++|+|+ +.+||.|+.|+.|++|.++.+.+
T Consensus 452 ~v~ysp~-G~~lAvgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 452 VVRYSPD-GAFLAVGSHDNHIYIYRVSANGR 481 (626)
T ss_pred EEEEcCC-CCEEEEecCCCeEEEEEECCCCc
Confidence 9999999 89999999999999999988765
No 135
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=1.1e-27 Score=178.37 Aligned_cols=290 Identities=18% Similarity=0.276 Sum_probs=224.2
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCC------ccee------eeeecCCCCeeEEEecCCCC
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAP------ALTE------LVAFDTADGVYDLAWSESHD 73 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~------~~~~------~~~~~~~~~v~~~~~~~~~~ 73 (317)
|...|.+++..|. .++++++++. ||.|.+||++.... ..+. ...-.|+-.|..+.|-|-+.
T Consensus 42 HgGsvNsL~id~t-egrymlSGga------dgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt 114 (397)
T KOG4283|consen 42 HGGSVNSLQIDLT-EGRYMLSGGA------DGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT 114 (397)
T ss_pred CCCccceeeeccc-cceEEeecCC------CccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC
Confidence 6788999999997 7788888776 99999999986541 0111 11224677899999999776
Q ss_pred CeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCC--CCEEEEEcCCCEEEEEEcCCCceeEEeeccccc
Q 021121 74 SLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTR--RDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYC 151 (317)
Q Consensus 74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 151 (317)
.++.+++.|.+++|||..+- +....++ -.+.|.+-+++|-. ..++++|..+-.|++.|+.+|...+.+.+|...
T Consensus 115 GmFtssSFDhtlKVWDtnTl---Q~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~ 190 (397)
T KOG4283|consen 115 GMFTSSSFDHTLKVWDTNTL---QEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG 190 (397)
T ss_pred ceeecccccceEEEeecccc---eeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc
Confidence 79999999999999998765 3433443 46778888888753 237888888999999999999999999999999
Q ss_pred eEEEEEecCCCCeEEEEeCCCeEEEEeCCCC-Cceee--------------eccCccceEEEEecCCCCcEEEEEecCCc
Q 021121 152 VYNATWNPRHSDVFCSASGDCTLRIWDVREM-GSTMI--------------IPAHEFEILACDWNKYDDCLIASASVDKS 216 (317)
Q Consensus 152 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~--------------~~~~~~~v~~i~~~~~~~~~l~~~~~d~~ 216 (317)
|.++.|+|...-.|++|+.||.|++||++.- .+... -..|.+.++.++|.. ++.++++++.|..
T Consensus 191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS-d~~~l~~~gtd~r 269 (397)
T KOG4283|consen 191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS-DARYLASCGTDDR 269 (397)
T ss_pred eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc-cchhhhhccCccc
Confidence 9999999998889999999999999999854 22221 235777899999998 9999999999999
Q ss_pred EEEEEccCCCccEEEEe--cCCCce---eEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEec
Q 021121 217 IKIWDVRNYRVPIAVLN--GHGYAV---RKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVL 291 (317)
Q Consensus 217 i~v~d~~~~~~~~~~~~--~~~~~v---~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 291 (317)
+++|+..+++..+..+- .|+..+ ..+. +-+.. .++---.++.+.++++-.++ .+..+..|...|.+..+-|+
T Consensus 270 ~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~-vfv~~p~~~~lall~~~sgs-~ir~l~~h~k~i~c~~~~~~ 346 (397)
T KOG4283|consen 270 IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSD-VFVLFPNDGSLALLNLLEGS-FVRRLSTHLKRINCAAYRPD 346 (397)
T ss_pred eEEeecccCcccccccccccccccccceEEEe-ecccc-eEEEEecCCeEEEEEccCce-EEEeeecccceeeEEeecCc
Confidence 99999988765333321 122111 1122 22223 34444456889999998887 67888999888999999988
Q ss_pred cCCeEEEeecCCcEEEEecC
Q 021121 292 VEGLLASTGWDELVYVWQQG 311 (317)
Q Consensus 292 ~~~~l~s~~~dg~i~~w~~~ 311 (317)
=+.+.+|..|+.+..|-..
T Consensus 347 -fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 347 -FEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred -hhhhhccccCCcccccccc
Confidence 6789999999999999874
No 136
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=7.1e-28 Score=207.20 Aligned_cols=251 Identities=21% Similarity=0.341 Sum_probs=206.0
Q ss_pred ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCC--CC------------cc-eeeeeecCCCCeeEEEec
Q 021121 5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPA--AP------------AL-TELVAFDTADGVYDLAWS 69 (317)
Q Consensus 5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~--~~------------~~-~~~~~~~~~~~v~~~~~~ 69 (317)
+|...|.|+.|+| ++..++++++ |+.|.||+.... .. .. ......+|...|..++|+
T Consensus 67 ~h~~sv~CVR~S~--dG~~lAsGSD------D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 67 DHDGSVNCVRFSP--DGSYLASGSD------DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS 138 (942)
T ss_pred cccCceeEEEECC--CCCeEeeccC------cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence 4788999999999 7888998887 889999998831 10 11 122334799999999999
Q ss_pred CCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecc-
Q 021121 70 ESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEH- 148 (317)
Q Consensus 70 ~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~- 148 (317)
|++ .+|++++.|++|.+|+..+. +.+..+.+|.+.|..+.|.|-|+ +|++-+.|++|++|++.+-...+.+..+
T Consensus 139 p~~-~~lvS~s~DnsViiwn~~tF---~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf 213 (942)
T KOG0973|consen 139 PDD-SLLVSVSLDNSVIIWNAKTF---ELLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPF 213 (942)
T ss_pred CCc-cEEEEecccceEEEEccccc---eeeeeeecccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccch
Confidence 987 69999999999999998765 88889999999999999999999 9999999999999998776666665543
Q ss_pred -----ccceEEEEEecCCCCeEEEEe----CCCeEEEEeCCCCCceeeeccCccceEEEEecCC----C--------C--
Q 021121 149 -----AYCVYNATWNPRHSDVFCSAS----GDCTLRIWDVREMGSTMIIPAHEFEILACDWNKY----D--------D-- 205 (317)
Q Consensus 149 -----~~~v~~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~----~--------~-- 205 (317)
...+..+.|+|| +++|++.- ...++.|.+-.+.+.-..+-+|..++.+++|+|. . .
T Consensus 214 ~~~~~~T~f~RlSWSPD-G~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~ 292 (942)
T KOG0973|consen 214 EESPLTTFFLRLSWSPD-GHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNC 292 (942)
T ss_pred hhCCCcceeeecccCCC-cCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCc
Confidence 335789999999 88888753 2346888887777778888999999999999983 1 1
Q ss_pred --cEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121 206 --CLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED 270 (317)
Q Consensus 206 --~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~ 270 (317)
..+|+|+.|++|.||.....+..+....-.+..|..++|+|+|- .|+++|.||+|.+..++..+
T Consensus 293 ~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~-~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 293 YYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGF-SLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred ceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCC-eEEEEecCCeEEEEEcchHH
Confidence 17899999999999999776644444444567899999999998 58889999999999987643
No 137
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=9.2e-27 Score=190.93 Aligned_cols=284 Identities=19% Similarity=0.250 Sum_probs=227.8
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
.+.+|.+++|+.. .+.++++-. +|.|.||++...- ..+.....+....|.+++|++.+ .|++.+.+|.|
T Consensus 24 ~Ps~I~slA~s~k-S~~lAvsRt-------~g~IEiwN~~~~w-~~~~vi~g~~drsIE~L~W~e~~--RLFS~g~sg~i 92 (691)
T KOG2048|consen 24 KPSEIVSLAYSHK-SNQLAVSRT-------DGNIEIWNLSNNW-FLEPVIHGPEDRSIESLAWAEGG--RLFSSGLSGSI 92 (691)
T ss_pred eccceEEEEEecc-CCceeeecc-------CCcEEEEccCCCc-eeeEEEecCCCCceeeEEEccCC--eEEeecCCceE
Confidence 4688999999995 455555544 9999999998753 23333333667789999999654 78888899999
Q ss_pred EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeE--EeeccccceEEEEEecCCCC
Q 021121 86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVR--TFKEHAYCVYNATWNPRHSD 163 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~ 163 (317)
.-||+.+. ++........+.|++++.+|.+. .++.|+.||.+..++...++... .+...++++.++.|+|+ +.
T Consensus 93 ~EwDl~~l---k~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~-~~ 167 (691)
T KOG2048|consen 93 TEWDLHTL---KQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPT-GT 167 (691)
T ss_pred EEEecccC---ceeEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCC-cc
Confidence 99999876 77778888899999999999987 89999999988888887765443 34456789999999999 88
Q ss_pred eEEEEeCCCeEEEEeCCCCCceeeec--------cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecC
Q 021121 164 VFCSASGDCTLRIWDVREMGSTMIIP--------AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH 235 (317)
Q Consensus 164 ~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 235 (317)
.+++|+.||.|++||...+..+.... ....-|.++.+- ....|++|...|+|.+||...+.. ++.+..|
T Consensus 168 ~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~gTL-iqS~~~h 244 (691)
T KOG2048|consen 168 KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFGTL-IQSHSCH 244 (691)
T ss_pred EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccCcch-hhhhhhh
Confidence 89999999999999999887666221 122336777776 455899999999999999998774 7888899
Q ss_pred CCceeEEEecCCCCeeEEeeecCCeEEEEecccccc---eeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121 236 GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDA---LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 236 ~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
.+.|.+++..+++. .+++++.|+.|.-|...+.+. .......|...|.+++..+ ..+++||.|..+.+=....
T Consensus 245 ~adVl~Lav~~~~d-~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~---~~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 245 DADVLALAVADNED-RVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE---NALISGGRDFTLAICSSRE 320 (691)
T ss_pred hcceeEEEEcCCCC-eEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec---ceEEecceeeEEEEccccc
Confidence 99999999999988 588899999988888776643 3445667888899999985 4899999999988766554
No 138
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.96 E-value=5.9e-28 Score=182.13 Aligned_cols=290 Identities=17% Similarity=0.268 Sum_probs=218.2
Q ss_pred ecCcceeEEEEec----CCCCeEEEEEecccccccCceEEEEecCCCC--CcceeeeeecCCCCeeEEEecCC---CCCe
Q 021121 5 KTPFNGYSVKFSP----FYESRLAVATAQNFGILGNGRVHVLDLSPAA--PALTELVAFDTADGVYDLAWSES---HDSL 75 (317)
Q Consensus 5 ~~~~~v~~~~~~p----~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~---~~~~ 75 (317)
++..+++.++|++ +..+.++.++ ..++.+|+..... ..++.....++.+....++|+-+ ++-+
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG--------~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~ 107 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVG--------GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPF 107 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeC--------CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCee
Confidence 3668899999996 2234444444 3488899887655 22333333357788888999753 3458
Q ss_pred EEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee---ccccce
Q 021121 76 LIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK---EHAYCV 152 (317)
Q Consensus 76 l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~~v 152 (317)
+|+|+.-|.|+|.|+... +....+.+|...|+.+.+.|+..+++++++.|..|++|++++..++..+. +|.+.|
T Consensus 108 la~~G~~GvIrVid~~~~---~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeV 184 (385)
T KOG1034|consen 108 LAAGGYLGVIRVIDVVSG---QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEV 184 (385)
T ss_pred EEeecceeEEEEEecchh---hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcE
Confidence 999999999999999876 77888999999999999999999999999999999999999999988874 689999
Q ss_pred EEEEEecCCCCeEEEEeCCCeEEEEeCCCCCcee----------------------------eeccCccceEEEEecCCC
Q 021121 153 YNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM----------------------------IIPAHEFEILACDWNKYD 204 (317)
Q Consensus 153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----------------------------~~~~~~~~v~~i~~~~~~ 204 (317)
.++.|+++ +..+++++.|.+|++|++...+... +-.-|...|-|+.|-
T Consensus 185 LSvD~~~~-gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--- 260 (385)
T KOG1034|consen 185 LSVDFSLD-GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--- 260 (385)
T ss_pred EEEEEcCC-CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---
Confidence 99999999 7899999999999999998321100 011245556666653
Q ss_pred CcEEEEEecCCcEEEEEccCCCcc-------------EEEEecCCCceeE--EEecCCCCeeEEeeecCCeEEEEecccc
Q 021121 205 DCLIASASVDKSIKIWDVRNYRVP-------------IAVLNGHGYAVRK--VKFSPHRRNLLASCSYDMTVCLWDFMVE 269 (317)
Q Consensus 205 ~~~l~~~~~d~~i~v~d~~~~~~~-------------~~~~~~~~~~v~~--~~~~~~~~~~l~~~~~d~~i~vwd~~~~ 269 (317)
++++++-+-++.|..|.....+.. +..+.-....|+- .+|.|-++ +|+.|...|.|.+||++..
T Consensus 261 gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gnq~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 261 GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGNQSGKVYVWDLDNN 339 (385)
T ss_pred hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhhccCCCcEEEEECCCC
Confidence 578888888999999987322211 1222223334444 45567777 7999999999999999988
Q ss_pred cceeee-ee--cccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121 270 DALVGR-YD--HHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG 311 (317)
Q Consensus 270 ~~~~~~-~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~ 311 (317)
++.... +. .....|...+|+.+ +.+|+...+|+.|.-||.-
T Consensus 340 ep~~~ttl~~s~~~~tVRQ~sfS~d-gs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 340 EPPKCTTLTHSKSGSTVRQTSFSRD-GSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCccCceEEeccccceeeeeeeccc-CcEEEEEeCCCcEEEEEee
Confidence 753222 22 22457999999999 8899999999999999863
No 139
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.4e-27 Score=186.41 Aligned_cols=265 Identities=14% Similarity=0.182 Sum_probs=204.8
Q ss_pred CceEEEEecCCCCCcceeeeeecCCCCeeEEE-ecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEE
Q 021121 36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLA-WSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADY 114 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (317)
...+.+||+.++....+-.... ...-.++. ..+ +..+++-.....+.+|.+.... ......--.++|.+++-
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~--~a~~~sl~~l~~--~yllsaq~~rp~l~vw~i~k~~---~~~q~~v~Pg~v~al~s 89 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSY--LAQAASLTALNN--EYLLSAQLKRPLLHVWEILKKD---QVVQYIVLPGPVHALAS 89 (476)
T ss_pred CcceeEEecCCCceeEEecCcc--cccchhhhhhch--hheeeecccCccccccccCchh---hhhhhcccccceeeeec
Confidence 4569999999876322221110 11111111 222 2344444455689999987542 22223335788999999
Q ss_pred ecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCC---------CCCce
Q 021121 115 NPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR---------EMGST 185 (317)
Q Consensus 115 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~---------~~~~~ 185 (317)
+|.|. +++.|+-.|.|++|.+.+|..+..+.+|-..|+++.|+.+ +.+|++|+.||.|.+|++. +.++.
T Consensus 90 ~n~G~-~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~d-gs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~ 167 (476)
T KOG0646|consen 90 SNLGY-FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDD-GSHIITGSKDGAVLVWLLTDLVSADNDHSVKPL 167 (476)
T ss_pred CCCce-EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCC-CcEEEecCCCccEEEEEEEeecccccCCCccce
Confidence 99997 8888879999999999999999999999999999999998 8999999999999999874 34677
Q ss_pred eeeccCccceEEEEecCC-CCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEE
Q 021121 186 MIIPAHEFEILACDWNKY-DDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLW 264 (317)
Q Consensus 186 ~~~~~~~~~v~~i~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vw 264 (317)
..+..|.-+|+.+...+. ....+++++.|.++++||+..+.. +..+. ....+.+++.+|..+ .++.|+.+|.|.+.
T Consensus 168 ~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L-Llti~-fp~si~av~lDpae~-~~yiGt~~G~I~~~ 244 (476)
T KOG0646|consen 168 HIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL-LLTIT-FPSSIKAVALDPAER-VVYIGTEEGKIFQN 244 (476)
T ss_pred eeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee-eEEEe-cCCcceeEEEccccc-EEEecCCcceEEee
Confidence 888899999999988763 356899999999999999998764 33333 456899999999998 69999999999988
Q ss_pred eccccc---------------ceeeeeecccc--eeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121 265 DFMVED---------------ALVGRYDHHTE--FAVGVDMSVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 265 d~~~~~---------------~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
++.... .....+.+|.. .|++++.+.| +.+|++|+.||.++|||+...
T Consensus 245 ~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D-gtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 245 LLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD-GTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred ehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC-ccEEEeeCCCCCEEEEecchH
Confidence 775432 23455668877 9999999999 899999999999999998764
No 140
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=3e-27 Score=176.04 Aligned_cols=252 Identities=19% Similarity=0.304 Sum_probs=196.1
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCC---------C---ceeeccCCcceEEEEEecCCCCEEEEE
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTAN---------P---IRSLHEHTREVHSADYNPTRRDSFITS 125 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~---------~---~~~~~~~~~~v~~~~~~~~~~~~l~~~ 125 (317)
.|.+.|+++...+....++++|+.||.|.+||++.....+ + ...-.+|+-.|.++.|.|-...++.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 5889999999999777899999999999999998753211 1 112246888999999999877799999
Q ss_pred cCCCEEEEEEcCCCceeEEeeccccceEEEEEecCC--CCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCC
Q 021121 126 SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRH--SDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKY 203 (317)
Q Consensus 126 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 203 (317)
+.|.++++||.++.+....++ .++.|++-+++|-. ..++++|..+-.|++.|+.++.....+.+|...|.++.|+|.
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred cccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 999999999999988888776 56779998998852 247888899999999999999999999999999999999998
Q ss_pred CCcEEEEEecCCcEEEEEccCCCccEEE--------------EecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccc
Q 021121 204 DDCLIASASVDKSIKIWDVRNYRVPIAV--------------LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE 269 (317)
Q Consensus 204 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~--------------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~ 269 (317)
.+-.|++|+.||.|++||++...-+... -..|.+.|..++|+.++. ++++.+.|..+++|+..++
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~-~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR-YLASCGTDDRIRVWNMESG 278 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch-hhhhccCccceEEeecccC
Confidence 8888999999999999999865322222 345778899999999999 5888899999999999887
Q ss_pred cceeeeee-------cccc-eeEe-----EEEEeccCC-eEEEeecCCcEEEEecC
Q 021121 270 DALVGRYD-------HHTE-FAVG-----VDMSVLVEG-LLASTGWDELVYVWQQG 311 (317)
Q Consensus 270 ~~~~~~~~-------~~~~-~v~~-----~~~~~~~~~-~l~s~~~dg~i~~w~~~ 311 (317)
+.....+. .|.+ .+.+ +.+-|.++. .|++......|+.|+..
T Consensus 279 ~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h 334 (397)
T KOG4283|consen 279 RNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH 334 (397)
T ss_pred cccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecc
Confidence 62222111 0100 1111 223344222 56666667778888876
No 141
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.96 E-value=6.3e-28 Score=191.37 Aligned_cols=272 Identities=16% Similarity=0.210 Sum_probs=207.7
Q ss_pred eEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecC
Q 021121 38 RVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPT 117 (317)
Q Consensus 38 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 117 (317)
.+++||......... ........++..+.|+......++..+.|..+++|.-... ..+....-......-.|++....
T Consensus 13 ~~kl~D~s~~~~~~~-~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~-~~~Vp~~~k~~gd~~~Cv~~~s~ 90 (673)
T KOG4378|consen 13 KTKLSDFSDLETKSE-YVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK-TPEVPRVRKLTGDNAFCVACASQ 90 (673)
T ss_pred ceEEeecccccCccc-cccCCCCCcceeeeccccceEEEeecCCceeEEEecccCC-CCccceeeccccchHHHHhhhhc
Confidence 899999987653222 2222334459999999865222333345778888874432 11111111111223344444444
Q ss_pred CCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccC-ccceE
Q 021121 118 RRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAH-EFEIL 196 (317)
Q Consensus 118 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~ 196 (317)
.. ++++|+..+.|+|||++...+.+.++.|...|+++.++-. ..+|++++..|.|.+..+.++.....+... ...++
T Consensus 91 S~-y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~-DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvR 168 (673)
T KOG4378|consen 91 SL-YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNT-DEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVR 168 (673)
T ss_pred ce-eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCC-cceeEEeccCCcEEEEecccCccccceecCCCCeEE
Confidence 44 9999999999999999987788889999999999999987 889999999999999999988777676644 34567
Q ss_pred EEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeee
Q 021121 197 ACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRY 276 (317)
Q Consensus 197 ~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 276 (317)
-+.|+|....+|.+++.+|.|.+||+............|..+...++|+|.+..+|++.+.|..|.+||.+... ....+
T Consensus 169 ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~-s~~~l 247 (673)
T KOG4378|consen 169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA-STDRL 247 (673)
T ss_pred EeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc-cccee
Confidence 89999977788889999999999999987765666778999999999999999899999999999999998765 33333
Q ss_pred ecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCCCC
Q 021121 277 DHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPRA 316 (317)
Q Consensus 277 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~ 316 (317)
. ...+...++|+++ +.+|++|...|.|..||++..+..
T Consensus 248 ~-y~~Plstvaf~~~-G~~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 248 T-YSHPLSTVAFSEC-GTYLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred e-ecCCcceeeecCC-ceEEEeecCCceEEEEecccCCCC
Confidence 3 2457899999999 899999999999999999986543
No 142
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.9e-27 Score=176.91 Aligned_cols=247 Identities=19% Similarity=0.284 Sum_probs=195.5
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD 137 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 137 (317)
++.. -.|+.|++-| .+||+|+.+|.|.|||+.+. ..-+.+.+|..+|++++|+++|+ .|++++.|..|.+||+.
T Consensus 22 d~~~-a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T~---~iar~lsaH~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~ 95 (405)
T KOG1273|consen 22 DNPL-AECCQFSRWG-DYLAVGCANGRVVIYDFDTF---RIARMLSAHVRPITSLCWSRDGR-KLLTSSRDWSIKLWDLL 95 (405)
T ss_pred cCCc-cceEEeccCc-ceeeeeccCCcEEEEEcccc---chhhhhhccccceeEEEecCCCC-EeeeecCCceeEEEecc
Confidence 4444 7899999998 69999999999999999876 66777889999999999999998 99999999999999999
Q ss_pred CCceeEEeeccccceEEEEEecC----------------------------------------------CCCeEEEEeCC
Q 021121 138 RPTSVRTFKEHAYCVYNATWNPR----------------------------------------------HSDVFCSASGD 171 (317)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~----------------------------------------------~~~~l~~~~~d 171 (317)
.|.+++.++ ..++|+...|+|. .++++++|...
T Consensus 96 ~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsK 174 (405)
T KOG1273|consen 96 KGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSK 174 (405)
T ss_pred CCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCc
Confidence 998777664 3344444444332 27889999999
Q ss_pred CeEEEEeCCCCCceeeeccCc-cceEEEEecCCCCcEEEEEecCCcEEEEEccCCCcc--------EEEEe--cCCCcee
Q 021121 172 CTLRIWDVREMGSTMIIPAHE-FEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVP--------IAVLN--GHGYAVR 240 (317)
Q Consensus 172 g~i~i~d~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--------~~~~~--~~~~~v~ 240 (317)
|.+.++|..+.+++..++-.. ..|.++.++. .+..|+.-+.|..||.|+++....+ .+.+. -...+-.
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk 253 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWK 253 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEec-cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhh
Confidence 999999999998888877555 6789999998 9999999999999999998742111 01111 0123446
Q ss_pred EEEecCCCCeeEEeeecCCeEEEEecccccceeeeeeccc-ceeEeEEEEeccCCeEEEeecCCcEEEEecCCCCC
Q 021121 241 KVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHT-EFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPR 315 (317)
Q Consensus 241 ~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~ 315 (317)
+++|+.+|.+++++......++||.-..+. +++.+.+.. .....+.|+|- ...+++- ..|.+++|.....+.
T Consensus 254 ~ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs-LVKILhG~kgE~l~DV~whp~-rp~i~si-~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 254 KCCFSGDGEYVCAGSARAHALYIWEKSIGS-LVKILHGTKGEELLDVNWHPV-RPIIASI-ASGVVYIWAVVQVEN 326 (405)
T ss_pred heeecCCccEEEeccccceeEEEEecCCcc-eeeeecCCchhheeecccccc-eeeeeec-cCCceEEEEeecccc
Confidence 889999999655555566789999988776 778888877 67889999997 4556665 789999999876554
No 143
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.96 E-value=2.4e-27 Score=188.07 Aligned_cols=268 Identities=20% Similarity=0.257 Sum_probs=215.9
Q ss_pred cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEE
Q 021121 8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKI 87 (317)
Q Consensus 8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 87 (317)
-.+.++.|+. .+.++++... +|..+++|.-....+....+... ....-.|++..... .++++|+..+.|+|
T Consensus 35 pg~~s~~w~~--~n~lvvas~~-----gdk~~~~~~K~g~~~~Vp~~~k~-~gd~~~Cv~~~s~S-~y~~sgG~~~~Vki 105 (673)
T KOG4378|consen 35 PGDFSFNWQR--RNFLVVASMA-----GDKVMRIKEKDGKTPEVPRVRKL-TGDNAFCVACASQS-LYEISGGQSGCVKI 105 (673)
T ss_pred Ccceeeeccc--cceEEEeecC-----CceeEEEecccCCCCccceeecc-ccchHHHHhhhhcc-eeeeccCcCceeee
Confidence 3478899998 4435544433 38899999866553323333222 22233444444444 69999999999999
Q ss_pred EEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecccc-ceEEEEEecCCCCeEE
Q 021121 88 YDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAY-CVYNATWNPRHSDVFC 166 (317)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~ 166 (317)
||++.. ...+.+++|...|+++.++.... +|++++..|.|.|..+.++.....+....+ .|.-+.|+|....+|.
T Consensus 106 wdl~~k---l~hr~lkdh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~ 181 (673)
T KOG4378|consen 106 WDLRAK---LIHRFLKDHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLS 181 (673)
T ss_pred hhhHHH---HHhhhccCCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeE
Confidence 999854 66677889999999999998877 999999999999999999988878875534 4568999998778899
Q ss_pred EEeCCCeEEEEeCCCCCceeee-ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEec
Q 021121 167 SASGDCTLRIWDVREMGSTMII-PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFS 245 (317)
Q Consensus 167 ~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~ 245 (317)
+++.+|.|.+||+....++..+ ..|..+...|+|+|.++.+|++.+.|..|.+||.+..+. ...+. ...+...++|+
T Consensus 182 ~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s-~~~l~-y~~Plstvaf~ 259 (673)
T KOG4378|consen 182 IASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS-TDRLT-YSHPLSTVAFS 259 (673)
T ss_pred eeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc-cceee-ecCCcceeeec
Confidence 9999999999999988777654 578999999999998899999999999999999997543 33333 34588999999
Q ss_pred CCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEec
Q 021121 246 PHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVL 291 (317)
Q Consensus 246 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 291 (317)
++|. +|++|...|.|..||++..+.++.....|...|++++|-|.
T Consensus 260 ~~G~-~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 260 ECGT-YLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred CCce-EEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence 9998 79999999999999999999899999999999999999986
No 144
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.7e-28 Score=212.04 Aligned_cols=260 Identities=18% Similarity=0.338 Sum_probs=212.6
Q ss_pred ceecCcceeEEEEecCCCCe--EEEEEecccccccCceEEEEecCCC--CCcceee-eeecCCCCeeEEEecCCCCCeEE
Q 021121 3 VFKTPFNGYSVKFSPFYESR--LAVATAQNFGILGNGRVHVLDLSPA--APALTEL-VAFDTADGVYDLAWSESHDSLLI 77 (317)
Q Consensus 3 ~~~~~~~v~~~~~~p~~~~~--~~~~~~~~~~~~~~g~i~i~~~~~~--~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~ 77 (317)
++.....-+.++|.+..++. +++++.+ ||.|.+||...- +.....+ ....|.+.|..+.|++..+++||
T Consensus 60 s~~s~~rF~kL~W~~~g~~~~GlIaGG~e------dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLA 133 (1049)
T KOG0307|consen 60 SLQSSNRFNKLAWGSYGSHSHGLIAGGLE------DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLA 133 (1049)
T ss_pred cccccccceeeeecccCCCccceeecccc------CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceee
Confidence 34556677899999965443 5666665 999999998762 2222222 22369999999999999878999
Q ss_pred EEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecccc--ceEEE
Q 021121 78 AAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAY--CVYNA 155 (317)
Q Consensus 78 ~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~v~~~ 155 (317)
+|+.||.|.|||+.+.+...... -....+.|.+++|+..-.+.|++++.+|.+.|||++..+.+..+..+.. .+..+
T Consensus 134 SGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l 212 (1049)
T KOG0307|consen 134 SGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVL 212 (1049)
T ss_pred ccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeee
Confidence 99999999999998753222211 2335688999999988877999999999999999999888877765544 47899
Q ss_pred EEecCCCCeEEEEeCCC---eEEEEeCCCC-CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEE
Q 021121 156 TWNPRHSDVFCSASGDC---TLRIWDVREM-GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAV 231 (317)
Q Consensus 156 ~~~~~~~~~l~~~~~dg---~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 231 (317)
+|+|++...+++++.|. .|.+||+|.- .+++.+.+|...|.++.|++.|..++++++.|+.|.+|+.++++. +..
T Consensus 213 ~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv-l~~ 291 (1049)
T KOG0307|consen 213 AWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV-LGE 291 (1049)
T ss_pred eeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE-eee
Confidence 99999888888888765 4999999875 566777899999999999998889999999999999999999775 777
Q ss_pred EecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121 232 LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED 270 (317)
Q Consensus 232 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~ 270 (317)
+.....++..+.|+|....++++++.||.|.|+.+....
T Consensus 292 ~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 292 LPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 777888999999999999889999999999999987654
No 145
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=1.2e-26 Score=190.72 Aligned_cols=293 Identities=23% Similarity=0.328 Sum_probs=230.8
Q ss_pred ecCcceeEEEEecCCCC-eEEEEEecccccccCceEEEEecCCCCCcceeeeee----cCCCCeeEEEecCCCCCeEEEE
Q 021121 5 KTPFNGYSVKFSPFYES-RLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAF----DTADGVYDLAWSESHDSLLIAA 79 (317)
Q Consensus 5 ~~~~~v~~~~~~p~~~~-~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~ 79 (317)
.|.+-|+++.|+| .+ .++.++. |.++.+|.-.+........... +...+-...-|+|++ +.+++-
T Consensus 265 GHeDWV~sv~W~p--~~~~LLSASa-------DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~-~~ii~~ 334 (764)
T KOG1063|consen 265 GHEDWVYSVWWHP--EGLDLLSASA-------DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS-NVIIAH 334 (764)
T ss_pred CcccceEEEEEcc--chhhheeccc-------CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC-CEEEEe
Confidence 4788999999999 56 4555544 8899999987664333333333 234468889999998 588888
Q ss_pred EcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc----eeEEeeccccceEEE
Q 021121 80 VADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT----SVRTFKEHAYCVYNA 155 (317)
Q Consensus 80 ~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~~ 155 (317)
+..|-.++|..+............+|...|.+++|.|.|. +|++.+.|-+-++|-.-..+ .+..-+.|...++|+
T Consensus 335 g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~ 413 (764)
T KOG1063|consen 335 GRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCL 413 (764)
T ss_pred cccCcEEEEeccCccceeeccccccccccceeeeecCCCC-EEEEeccccceeeecccccccceeeecccccccccceee
Confidence 8899999999554444455666789999999999999999 99999999999998755221 122224577889999
Q ss_pred EEecCCCCeEEEEeCCCeEEEEeCCC-------------------------------------------CC---------
Q 021121 156 TWNPRHSDVFCSASGDCTLRIWDVRE-------------------------------------------MG--------- 183 (317)
Q Consensus 156 ~~~~~~~~~l~~~~~dg~i~i~d~~~-------------------------------------------~~--------- 183 (317)
++-+. ...+++|.+...+|+|+... +.
T Consensus 414 ~~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~ 492 (764)
T KOG1063|consen 414 SFVNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETP 492 (764)
T ss_pred ehccC-CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecc
Confidence 99986 67888999999999998640 00
Q ss_pred ------------------------ceeeeccCccceEEEEecCCCCcEEEEEecCC-----cEEEEEccCCCccEEEEec
Q 021121 184 ------------------------STMIIPAHEFEILACDWNKYDDCLIASASVDK-----SIKIWDVRNYRVPIAVLNG 234 (317)
Q Consensus 184 ------------------------~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~~~~~~ 234 (317)
.+..+.+|...|.+++.+| +++++|+++... .|++|+..+..+ ...+.+
T Consensus 493 ~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~-~~~L~~ 570 (764)
T KOG1063|consen 493 LAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQ-VQELEG 570 (764)
T ss_pred cccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhh-hheecc
Confidence 0112236778899999999 999999998654 599999988765 668899
Q ss_pred CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccce---eeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121 235 HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL---VGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG 311 (317)
Q Consensus 235 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~ 311 (317)
|.-.|+.++|||+++ +|++.+.|.++.+|........ ......|..-|.+..|+|+ +.+++|+|.|.+|++|...
T Consensus 571 HsLTVT~l~FSpdg~-~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pd-e~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 571 HSLTVTRLAFSPDGR-YLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPD-EKYFATASRDKKVKVWEEP 648 (764)
T ss_pred cceEEEEEEECCCCc-EEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcc-cceeEEecCCceEEEEecc
Confidence 999999999999999 7999999999999997654322 2336789999999999999 7889999999999999987
Q ss_pred CC
Q 021121 312 MD 313 (317)
Q Consensus 312 ~~ 313 (317)
..
T Consensus 649 ~~ 650 (764)
T KOG1063|consen 649 DL 650 (764)
T ss_pred Cc
Confidence 65
No 146
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.96 E-value=1.1e-26 Score=172.69 Aligned_cols=262 Identities=20% Similarity=0.322 Sum_probs=206.6
Q ss_pred ceeeeeecCCCCeeEEEec--CCCCCeEEEEEc----CCeEEEEEeCCCCCCCCce-eeccCCcceEEEEEecCCC----
Q 021121 51 LTELVAFDTADGVYDLAWS--ESHDSLLIAAVA----DGSVKIYDTALPPTANPIR-SLHEHTREVHSADYNPTRR---- 119 (317)
Q Consensus 51 ~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~----dg~i~v~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~---- 119 (317)
.+++..+..+-.+.++.|+ |+....|+.|+. .+.|.|..+... ..+.+. .-..|.-+++.+.|.|+..
T Consensus 35 ~~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~-s~e~~~~a~fd~~YP~tK~~wiPd~~g~~p 113 (364)
T KOG0290|consen 35 RKEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDED-SGELVEDANFDHPYPVTKLMWIPDSKGVYP 113 (364)
T ss_pred cceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccC-CCceeccCCCCCCCCccceEecCCccccCc
Confidence 4456667777889999999 444568888875 467888877643 222221 1236889999999999863
Q ss_pred CEEEEEcCCCEEEEEEcCCCcee----EE-----eeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc---eee
Q 021121 120 DSFITSSWDDTVKLWTVDRPTSV----RT-----FKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS---TMI 187 (317)
Q Consensus 120 ~~l~~~~~dg~v~iwd~~~~~~~----~~-----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~ 187 (317)
.+|++++ ..+++|.+...+.. .. -..+..+++++.|+.-+.+++.+++-|-+..|||++++.. ..+
T Consensus 114 dlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ 191 (364)
T KOG0290|consen 114 DLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ 191 (364)
T ss_pred chhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE
Confidence 3566554 48999998742111 11 1245678999999998899999999999999999998733 567
Q ss_pred eccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec--CCCceeEEEecCCCCeeEEeeecC-CeEEEE
Q 021121 188 IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG--HGYAVRKVKFSPHRRNLLASCSYD-MTVCLW 264 (317)
Q Consensus 188 ~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d-~~i~vw 264 (317)
+..|..+|..++|.....+.+++.+.||.+|+||+|..+......+. ...+...++|++...+++|+-..| ..|.|.
T Consensus 192 LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iL 271 (364)
T KOG0290|consen 192 LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVIL 271 (364)
T ss_pred EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEE
Confidence 77899999999999866789999999999999999987643223322 246788999999998888886655 469999
Q ss_pred ecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCCC
Q 021121 265 DFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPR 315 (317)
Q Consensus 265 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~ 315 (317)
|++.....+.++++|.+.|++++|.|.....|+|+|.|..+.+||+...++
T Consensus 272 DiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 272 DIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred EecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 999999899999999999999999999888999999999999999988765
No 147
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=4.9e-28 Score=192.31 Aligned_cols=252 Identities=18% Similarity=0.301 Sum_probs=211.3
Q ss_pred eeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeecc--CCcceEEEEEecCCCCEEEEEcCCC
Q 021121 52 TELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHE--HTREVHSADYNPTRRDSFITSSWDD 129 (317)
Q Consensus 52 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg 129 (317)
+.+..+.|.+-|.++..+... +.+.+|+. |.|+|||+.......++..+.. ....|.++...|||+ .|++|+.-.
T Consensus 411 rq~~tL~HGEvVcAvtIS~~t-rhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr-tLivGGeas 487 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPT-RHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR-TLIVGGEAS 487 (705)
T ss_pred HhhhhhccCcEEEEEEecCCc-ceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc-eEEeccccc
Confidence 345556788889999999776 68888875 6799999987766666666654 356799999999998 899999999
Q ss_pred EEEEEEcCCCceeE--EeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcE
Q 021121 130 TVKLWTVDRPTSVR--TFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCL 207 (317)
Q Consensus 130 ~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 207 (317)
++.|||+....... .+....-...+++.+|| .++.+++..||.|.|||+++...++.+++|...+.||.+++ +|..
T Consensus 488 tlsiWDLAapTprikaeltssapaCyALa~spD-akvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~-dGtk 565 (705)
T KOG0639|consen 488 TLSIWDLAAPTPRIKAELTSSAPACYALAISPD-AKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK-DGTK 565 (705)
T ss_pred eeeeeeccCCCcchhhhcCCcchhhhhhhcCCc-cceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC-CCce
Confidence 99999998765433 33333346788999999 88999999999999999999999999999999999999999 9999
Q ss_pred EEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEE
Q 021121 208 IASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVD 287 (317)
Q Consensus 208 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 287 (317)
|.+|+-|.++|.||++.++++. .. ...+.|.++.++|++. +|+.|-.++.+.|......+ ...+..|++.|.++.
T Consensus 566 lWTGGlDntvRcWDlregrqlq-qh-dF~SQIfSLg~cP~~d-WlavGMens~vevlh~skp~--kyqlhlheScVLSlK 640 (705)
T KOG0639|consen 566 LWTGGLDNTVRCWDLREGRQLQ-QH-DFSSQIFSLGYCPTGD-WLAVGMENSNVEVLHTSKPE--KYQLHLHESCVLSLK 640 (705)
T ss_pred eecCCCccceeehhhhhhhhhh-hh-hhhhhheecccCCCcc-ceeeecccCcEEEEecCCcc--ceeecccccEEEEEE
Confidence 9999999999999999987532 22 2456899999999999 79999999998888766544 456778999999999
Q ss_pred EEeccCCeEEEeecCCcEEEEecCCCC
Q 021121 288 MSVLVEGLLASTGWDELVYVWQQGMDP 314 (317)
Q Consensus 288 ~~~~~~~~l~s~~~dg~i~~w~~~~~~ 314 (317)
|.+. ++++++.|.|+.+..|....+.
T Consensus 641 Fa~c-GkwfvStGkDnlLnawrtPyGa 666 (705)
T KOG0639|consen 641 FAYC-GKWFVSTGKDNLLNAWRTPYGA 666 (705)
T ss_pred eccc-CceeeecCchhhhhhccCcccc
Confidence 9999 8999999999999999986653
No 148
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4.6e-26 Score=186.88 Aligned_cols=244 Identities=18% Similarity=0.294 Sum_probs=204.5
Q ss_pred CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeecc-CCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121 59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHE-HTREVHSADYNPTRRDSFITSSWDDTVKLWTVD 137 (317)
Q Consensus 59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 137 (317)
.+.+|.++||+.+. +.||.+-.+|.|.+|++... +.....+.+ ....|.+++|++.+ .|++.+.+|.|.-||+.
T Consensus 24 ~Ps~I~slA~s~kS-~~lAvsRt~g~IEiwN~~~~--w~~~~vi~g~~drsIE~L~W~e~~--RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKS-NQLAVSRTDGNIEIWNLSNN--WFLEPVIHGPEDRSIESLAWAEGG--RLFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccC-CceeeeccCCcEEEEccCCC--ceeeEEEecCCCCceeeEEEccCC--eEEeecCCceEEEEecc
Confidence 34579999999987 68999999999999999864 344444444 35689999999665 58999999999999999
Q ss_pred CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCce--eeeccCccceEEEEecCCCCcEEEEEecCC
Q 021121 138 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST--MIIPAHEFEILACDWNKYDDCLIASASVDK 215 (317)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~ 215 (317)
++++...+....+.|++++.+|. +..++.|++||.+..++...++.. ..+...++.+.++.|+| ++..+++|+.||
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~-~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg 176 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPE-NTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDG 176 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCc-cceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCc
Confidence 99999999999999999999998 788999999998888887766443 34455678899999999 999999999999
Q ss_pred cEEEEEccCCCccEEEE-------e-cCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEE
Q 021121 216 SIKIWDVRNYRVPIAVL-------N-GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVD 287 (317)
Q Consensus 216 ~i~v~d~~~~~~~~~~~-------~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 287 (317)
.|++||..++.. +... . ....-|+++.|-.++ .|++|..-|+|++||...+. +.+.+..|.+.|.+++
T Consensus 177 ~Iriwd~~~~~t-~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gT-LiqS~~~h~adVl~La 252 (691)
T KOG2048|consen 177 VIRIWDVKSGQT-LHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGT-LIQSHSCHDADVLALA 252 (691)
T ss_pred eEEEEEcCCCce-EEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcc-hhhhhhhhhcceeEEE
Confidence 999999998764 3311 1 133467888888776 59999999999999998876 7788899999999999
Q ss_pred EEeccCCeEEEeecCCcEEEEecCCCC
Q 021121 288 MSVLVEGLLASTGWDELVYVWQQGMDP 314 (317)
Q Consensus 288 ~~~~~~~~l~s~~~dg~i~~w~~~~~~ 314 (317)
..++ ++++.++|.|+.|..+...+..
T Consensus 253 v~~~-~d~vfsaGvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 253 VADN-EDRVFSAGVDPKIIQYSLTTNK 278 (691)
T ss_pred EcCC-CCeEEEccCCCceEEEEecCCc
Confidence 9998 7899999999999999887653
No 149
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.96 E-value=5e-27 Score=184.28 Aligned_cols=254 Identities=19% Similarity=0.265 Sum_probs=201.3
Q ss_pred cCCCCeeEEEecCCCC-CeEEEEEcCCeEEEEEeCC-CCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEE
Q 021121 58 DTADGVYDLAWSESHD-SLLIAAVADGSVKIYDTAL-PPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWT 135 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~v~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd 135 (317)
-+.+.|++++|+|..+ +++++|...|.|-+||+.. .+....+..+..|..+|.++.|+|.+...+++.+.||+|+.-|
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D 263 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD 263 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee
Confidence 3678899999999876 7899999999999999952 2234456667889999999999999888999999999999999
Q ss_pred cCCCceeE--EeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc-eeeeccCccceEEEEecCCCCcEEEEEe
Q 021121 136 VDRPTSVR--TFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS-TMIIPAHEFEILACDWNKYDDCLIASAS 212 (317)
Q Consensus 136 ~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l~~~~ 212 (317)
++...... .+......+.++.|+.. ...++.+..=|.+.+||+++.+. ...+..|+..|.+++++|....++++++
T Consensus 264 ~~~~i~e~v~s~~~d~~~fs~~d~~~e-~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s 342 (498)
T KOG4328|consen 264 FEGNISEEVLSLDTDNIWFSSLDFSAE-SRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATAS 342 (498)
T ss_pred ecchhhHHHhhcCccceeeeeccccCC-CccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecc
Confidence 98774333 33335566888889888 55566777777999999998765 5566678889999999999999999999
Q ss_pred cCCcEEEEEccCCCc---cEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecc---cccceeeeeec-cc----c
Q 021121 213 VDKSIKIWDVRNYRV---PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFM---VEDALVGRYDH-HT----E 281 (317)
Q Consensus 213 ~d~~i~v~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~---~~~~~~~~~~~-~~----~ 281 (317)
.|++.+|||+|.... |......|...|.+..|||.+.. |++.+.|..|+|||.. ...++...+.. +. -
T Consensus 343 ~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rwl 421 (498)
T KOG4328|consen 343 LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWL 421 (498)
T ss_pred cCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccc
Confidence 999999999997542 33445579999999999999996 8899999999999984 22222222221 11 1
Q ss_pred eeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121 282 FAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP 314 (317)
Q Consensus 282 ~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~ 314 (317)
......|.|+ ..++++|-.-..|-|+|-..++
T Consensus 422 T~fKA~W~P~-~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 422 TPFKAAWDPD-YNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred cchhheeCCC-ccEEEEeccCcceeEEcCCCCE
Confidence 2445689998 8899999999999999876654
No 150
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.3e-26 Score=193.68 Aligned_cols=245 Identities=14% Similarity=0.233 Sum_probs=202.9
Q ss_pred ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEc
Q 021121 57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTV 136 (317)
Q Consensus 57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~ 136 (317)
+.|..+.+.++|.|+|+ .|++++.||.|++|+..... +.-..+..+...|.+++... . +|++|+.+++|.+|.+
T Consensus 10 yaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~--e~P~ti~~~g~~v~~ia~~s--~-~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDE--EEPETIDISGELVSSIACYS--N-HFLTGSEQNTVLRYKF 83 (933)
T ss_pred hhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcc--cCCchhhccCceeEEEeecc--c-ceEEeeccceEEEeeC
Confidence 46888899999999995 99999999999999977652 11112222778888887653 3 8999999999999999
Q ss_pred CCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCc
Q 021121 137 DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKS 216 (317)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~ 216 (317)
.+++.-..+....-++.+++++.+ +++++.|+.|-.|++.++.+......+.+|+.+|.++.++| .+++||+.+-||.
T Consensus 84 ps~~~~~iL~Rftlp~r~~~v~g~-g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~ 161 (933)
T KOG1274|consen 84 PSGEEDTILARFTLPIRDLAVSGS-GKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGK 161 (933)
T ss_pred CCCCccceeeeeeccceEEEEecC-CcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC-CCCEEEEEecCce
Confidence 998877667777888999999998 89999999999999999999999999999999999999999 9999999999999
Q ss_pred EEEEEccCCCccEEEEec--------CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeee-eecccceeEeEE
Q 021121 217 IKIWDVRNYRVPIAVLNG--------HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGR-YDHHTEFAVGVD 287 (317)
Q Consensus 217 i~v~d~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~-~~~~~~~v~~~~ 287 (317)
|++||+.++.. ..++.+ ....+..++|+|++.. ++..+.|+.|++|+..+.+..... ...+...+..++
T Consensus 162 v~iw~~~~~~~-~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~-la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~ 239 (933)
T KOG1274|consen 162 VQIWDLQDGIL-SKTLTGVDKDNEFILSRICTRLAWHPKGGT-LAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQ 239 (933)
T ss_pred EEEEEcccchh-hhhcccCCccccccccceeeeeeecCCCCe-EEeeccCCeEEEEccCCceeheeecccccccceEEEE
Confidence 99999997653 333221 1456788999999885 666677999999998887743322 223444599999
Q ss_pred EEeccCCeEEEeecCCcEEEEecCC
Q 021121 288 MSVLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 288 ~~~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
|+|. |.+||+++.||.|.|||+++
T Consensus 240 wsPn-G~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 240 WSPN-GKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EcCC-CcEEeeeccCCcEEEEeccc
Confidence 9999 89999999999999999984
No 151
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.96 E-value=1e-25 Score=189.18 Aligned_cols=303 Identities=17% Similarity=0.164 Sum_probs=226.1
Q ss_pred cCcceeEEEEecCCCC--eEEEEEeccccc----------ccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCC
Q 021121 6 TPFNGYSVKFSPFYES--RLAVATAQNFGI----------LGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHD 73 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~--~~~~~~~~~~~~----------~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 73 (317)
....++.+.|+|+... .+.++....+.. ..++.+.+|++.... .+...+.....|.+++|+|..+
T Consensus 179 ~~~~~~~~~w~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~vW~~~~p~---~Pe~~~~~~s~v~~~~f~p~~p 255 (555)
T KOG1587|consen 179 PKRQVTDESWHPTGSVLIAVSVAYSELDFDRYAFNKPLLSEPDGVLLVWSLKNPN---TPELVLESPSEVTCLKFCPFDP 255 (555)
T ss_pred hhcceeeeeeccCCCcceEEEEeecccccccccccccccccCCceEEEEecCCCC---CceEEEecCCceeEEEeccCCc
Confidence 4456788899996442 233333332211 124579999998763 2334446788999999999999
Q ss_pred CeEEEEEcCCeEEEEEeCCCCC--CCCc-eeeccCCcceEEEEEecCCC-CEEEEEcCCCEEEEEEcCCCcee------E
Q 021121 74 SLLIAAVADGSVKIYDTALPPT--ANPI-RSLHEHTREVHSADYNPTRR-DSFITSSWDDTVKLWTVDRPTSV------R 143 (317)
Q Consensus 74 ~~l~~~~~dg~i~v~~~~~~~~--~~~~-~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~------~ 143 (317)
++++.|..+|.|.+||+..... ...+ .....|..+++.+.|..+-. .-+++++.||.|..|+++.-... .
T Consensus 256 ~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~ 335 (555)
T KOG1587|consen 256 NLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLE 335 (555)
T ss_pred ceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccc
Confidence 9999999999999999987633 1112 22346899999999965432 25899999999999988653221 0
Q ss_pred Eee------ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCC--------ceeeeccCccceEEEEecCCCCcEEE
Q 021121 144 TFK------EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMG--------STMIIPAHEFEILACDWNKYDDCLIA 209 (317)
Q Consensus 144 ~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~v~~i~~~~~~~~~l~ 209 (317)
... .....++++.|.+.+.+.+++|+++|.|..-+-...+ ....+..|.++|+++.++|.....++
T Consensus 336 ~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fl 415 (555)
T KOG1587|consen 336 SKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFL 415 (555)
T ss_pred cccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceee
Confidence 111 1234689999999999999999999999874433221 12345568899999999997777777
Q ss_pred EEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc-ceeeeeecccceeEeEEE
Q 021121 210 SASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED-ALVGRYDHHTEFAVGVDM 288 (317)
Q Consensus 210 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~ 288 (317)
+++ |.++++|.......|+..+..+...+++++|||....+++++..||.+.+||+.... .++.....+....+.+.|
T Consensus 416 s~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~ 494 (555)
T KOG1587|consen 416 SVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRW 494 (555)
T ss_pred eec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeec
Confidence 776 999999998855667888888888899999999999899999999999999987654 334444444667778888
Q ss_pred EeccCCeEEEeecCCcEEEEecCCC
Q 021121 289 SVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 289 ~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
++. +..|+.|...|.+++|++...
T Consensus 495 s~~-g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 495 SPN-GKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred CCC-CcEEEEecCCCcEEEEEcCch
Confidence 887 889999999999999999653
No 152
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.95 E-value=6.5e-27 Score=191.07 Aligned_cols=120 Identities=27% Similarity=0.454 Sum_probs=106.2
Q ss_pred eEEEEecCCCCcEEEEEecCCcEEEEEccCCC------ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121 195 ILACDWNKYDDCLIASASVDKSIKIWDVRNYR------VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV 268 (317)
Q Consensus 195 v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~ 268 (317)
|+.+.|+|.+...|+++++||.|++|.+.... .+-..+..|...|+++.|+|-...+|++++.|.+|++||+.+
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 56777888888999999999999999987543 345678889999999999998777999999999999999999
Q ss_pred ccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCCCC
Q 021121 269 EDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPRA 316 (317)
Q Consensus 269 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~ 316 (317)
.. ....+.+|.+.|.+++|||+ ++.+++.+.||+|++|+-...+..
T Consensus 710 ~~-~~~~l~gHtdqIf~~AWSpd-Gr~~AtVcKDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 710 AK-LYSRLVGHTDQIFGIAWSPD-GRRIATVCKDGTLRVYEPRSREQP 755 (1012)
T ss_pred hh-hhheeccCcCceeEEEECCC-CcceeeeecCceEEEeCCCCCCCc
Confidence 87 56789999999999999999 899999999999999998776543
No 153
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.8e-25 Score=166.33 Aligned_cols=253 Identities=17% Similarity=0.310 Sum_probs=190.3
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeee-cCCCCeeEEEecC-CCCCeEEEEEcCC
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAF-DTADGVYDLAWSE-SHDSLLIAAVADG 83 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~~l~~~~~dg 83 (317)
|.+-|.++.|.+ -|+-+++++. |++|.|||.+............ .|.+.|..+.|.+ .-...+|+++.|+
T Consensus 12 h~DlihdVs~D~--~GRRmAtCSs------Dq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr 83 (361)
T KOG2445|consen 12 HKDLIHDVSFDF--YGRRMATCSS------DQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDR 83 (361)
T ss_pred Ccceeeeeeecc--cCceeeeccC------CCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCC
Confidence 567799999999 4555666664 9999999986665545444433 5889999999965 3336999999999
Q ss_pred eEEEEEeCCC------CCCCCceeeccCCcceEEEEEecCCC-CEEEEEcCCCEEEEEEcCCCceeE------Eee----
Q 021121 84 SVKIYDTALP------PTANPIRSLHEHTREVHSADYNPTRR-DSFITSSWDDTVKLWTVDRPTSVR------TFK---- 146 (317)
Q Consensus 84 ~i~v~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~------~~~---- 146 (317)
++.||.=... .......++....+.|+.++|.|... ..+++++.||.++||+.-..-.+. .++
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 9999985321 12234456677889999999998632 278999999999999876543222 222
Q ss_pred ---ccccceEEEEEecC--CCCeEEEEeCC-----CeEEEEeCCCCC----ceeeeccCccceEEEEecCCCC---cEEE
Q 021121 147 ---EHAYCVYNATWNPR--HSDVFCSASGD-----CTLRIWDVREMG----STMIIPAHEFEILACDWNKYDD---CLIA 209 (317)
Q Consensus 147 ---~~~~~v~~~~~~~~--~~~~l~~~~~d-----g~i~i~d~~~~~----~~~~~~~~~~~v~~i~~~~~~~---~~l~ 209 (317)
.+..+..|+.|+|. ...+|++|+.+ +.+.||...... .+..+.+|..+|+.++|.|.-+ .+||
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence 35567889999974 24578888766 478888765442 3446678999999999999544 5799
Q ss_pred EEecCCcEEEEEccCCC-------------------ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121 210 SASVDKSIKIWDVRNYR-------------------VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV 268 (317)
Q Consensus 210 ~~~~d~~i~v~d~~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~ 268 (317)
+++.|| |+||.++... ..+..+..|++.|..+.|+-.|. +|++.+.||.|++|...-
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt-iLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT-ILSSTGDDGCVRLWKANY 319 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee-EEeecCCCceeeehhhhh
Confidence 999999 9999997421 12344678999999999999998 799999999999997543
No 154
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=2.3e-28 Score=201.64 Aligned_cols=222 Identities=24% Similarity=0.450 Sum_probs=197.4
Q ss_pred eEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEE
Q 021121 75 LLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYN 154 (317)
Q Consensus 75 ~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 154 (317)
.+......-.+++|+.+ .+..|...+.++..-..++ .+++|+.|-.+-+|.+.....+..+.+|..+|.+
T Consensus 6 ~~m~~~~~t~Lr~~~~~---------~~~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeS 75 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTR---------EFVAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITSLTGHESPIES 75 (825)
T ss_pred ccceeeeeeccccccch---------hhhhhhhhhceeeeeccce-eeccCCCceeeccccccCCchhheeeccCCccee
Confidence 33444445557777754 2346888888888865555 8999999999999999888888889999999999
Q ss_pred EEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec
Q 021121 155 ATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG 234 (317)
Q Consensus 155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 234 (317)
+.|++. ..++++|+.+|+|++||+...+.++.+.+|...+.++.|+| -+.+.+.|+.|..+++||.+... +...+.+
T Consensus 76 l~f~~~-E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~G-c~~~~~s 152 (825)
T KOG0267|consen 76 LTFDTS-ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKG-CSHTYKS 152 (825)
T ss_pred eecCcc-hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeecc-ceEEeccccccccceehhhhccC-ceeeecC
Confidence 999998 88999999999999999999999999999999999999999 88899999999999999999755 5888889
Q ss_pred CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121 235 HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 235 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
|...|..+.|+|+|+ +++.+++|..++|||...++ +...+..|++.+..+.|+|. +-++++||.|+++++||+++
T Consensus 153 ~~~vv~~l~lsP~Gr-~v~~g~ed~tvki~d~~agk-~~~ef~~~e~~v~sle~hp~-e~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 153 HTRVVDVLRLSPDGR-WVASGGEDNTVKIWDLTAGK-LSKEFKSHEGKVQSLEFHPL-EVLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred CcceeEEEeecCCCc-eeeccCCcceeeeecccccc-cccccccccccccccccCch-hhhhccCCCCceeeeeccce
Confidence 999999999999999 79999999999999998886 77899999999999999998 78999999999999999984
No 155
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=1.4e-24 Score=176.22 Aligned_cols=261 Identities=15% Similarity=0.134 Sum_probs=180.1
Q ss_pred ecCcceeEEEEecCCCCe-EEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC
Q 021121 5 KTPFNGYSVKFSPFYESR-LAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG 83 (317)
Q Consensus 5 ~~~~~v~~~~~~p~~~~~-~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 83 (317)
.....+.+++|+|+ +. +++++.. ++.|++||...... ...+.....+..++|+|+++.+++++..++
T Consensus 28 ~~~~~~~~l~~~~d--g~~l~~~~~~------~~~v~~~d~~~~~~----~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 95 (300)
T TIGR03866 28 PVGQRPRGITLSKD--GKLLYVCASD------SDTIQVIDLATGEV----IGTLPSGPDPELFALHPNGKILYIANEDDN 95 (300)
T ss_pred ECCCCCCceEECCC--CCEEEEEECC------CCeEEEEECCCCcE----EEeccCCCCccEEEECCCCCEEEEEcCCCC
Confidence 33455778999994 44 4344443 78999999886542 222223334678899999854445556789
Q ss_pred eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCC-EEEEEEcCCCceeEEeeccccceEEEEEecCCC
Q 021121 84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD-TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS 162 (317)
Q Consensus 84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (317)
.+++||+... ..+..+. +...+.+++|+|++. ++++++.++ .+.+||.++++...... ....+..++|+|+ +
T Consensus 96 ~l~~~d~~~~---~~~~~~~-~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~d-g 168 (300)
T TIGR03866 96 LVTVIDIETR---KVLAEIP-VGVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTAD-G 168 (300)
T ss_pred eEEEEECCCC---eEEeEee-CCCCcceEEECCCCC-EEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCC-C
Confidence 9999999764 3444443 234568899999998 777777664 57788998877665544 2345678999999 6
Q ss_pred CeE-EEEeCCCeEEEEeCCCCCceeeeccCc-------cceEEEEecCCCCcEEEE-EecCCcEEEEEccCCCccEEEEe
Q 021121 163 DVF-CSASGDCTLRIWDVREMGSTMIIPAHE-------FEILACDWNKYDDCLIAS-ASVDKSIKIWDVRNYRVPIAVLN 233 (317)
Q Consensus 163 ~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~v~~i~~~~~~~~~l~~-~~~d~~i~v~d~~~~~~~~~~~~ 233 (317)
..+ +++..++.|++||+++++.+..+..+. .....++|+| +++.+++ .+.++.+.+||.++.+. ....
T Consensus 169 ~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~~~~~~-~~~~- 245 (300)
T TIGR03866 169 KELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDAKTYEV-LDYL- 245 (300)
T ss_pred CEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCeEEEEECCCCcE-EEEE-
Confidence 655 455569999999999887666553211 1234688999 7776444 45567899999987653 3333
Q ss_pred cCCCceeEEEecCCCCeeEEe-eecCCeEEEEecccccceeeeeecccceeEeEEEEe
Q 021121 234 GHGYAVRKVKFSPHRRNLLAS-CSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSV 290 (317)
Q Consensus 234 ~~~~~v~~~~~~~~~~~~l~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 290 (317)
.+...+.+++|+|+++. |++ .+.++.|++||+++++ ++..+... ...++++++|
T Consensus 246 ~~~~~~~~~~~~~~g~~-l~~~~~~~~~i~v~d~~~~~-~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 246 LVGQRVWQLAFTPDEKY-LLTTNGVSNDVSVIDVAALK-VIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EeCCCcceEEECCCCCE-EEEEcCCCCeEEEEECCCCc-EEEEEEcc-cccceeEeCC
Confidence 24457899999999995 555 4578999999999876 45555543 4558888764
No 156
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.95 E-value=1.4e-25 Score=173.69 Aligned_cols=294 Identities=17% Similarity=0.202 Sum_probs=221.9
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcc-----eeeee-ecCCCCeeEEEecCCCCCeEEEE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPAL-----TELVA-FDTADGVYDLAWSESHDSLLIAA 79 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~-----~~~~~-~~~~~~v~~~~~~~~~~~~l~~~ 79 (317)
...+++++.|.+...++++.+++ |..|++|.++...+.- ..+.. ..|...|+++.|+|+| .+||+|
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~-------D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g-elLASg 83 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGG-------DKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG-ELLASG 83 (434)
T ss_pred CCCceEEEEeccCcccceecccC-------ccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc-Ceeeec
Confidence 56789999999965555555554 8899999997654322 11111 2688999999999999 499999
Q ss_pred EcCCeEEEEEeC--------C-----CCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee
Q 021121 80 VADGSVKIYDTA--------L-----PPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK 146 (317)
Q Consensus 80 ~~dg~i~v~~~~--------~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 146 (317)
+.+|.|.+|... + .+.+.....+.+|...|..++|+|++. ++++++.|..+++||+..|+....+.
T Consensus 84 ~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~l~~~~~ 162 (434)
T KOG1009|consen 84 GDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAGQLLAILD 162 (434)
T ss_pred CCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEeccceeEeecc
Confidence 999999999876 2 112334456778999999999999998 99999999999999999999999999
Q ss_pred ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec-----------------------cCccceEEEEecCC
Q 021121 147 EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP-----------------------AHEFEILACDWNKY 203 (317)
Q Consensus 147 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----------------------~~~~~v~~i~~~~~ 203 (317)
.|...+..++|.|. .+++++-+.|...+.+++...+.+.... ....-...++|+|
T Consensus 163 dh~~yvqgvawDpl-~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTP- 240 (434)
T KOG1009|consen 163 DHEHYVQGVAWDPL-NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTP- 240 (434)
T ss_pred ccccccceeecchh-hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCC-
Confidence 99999999999998 8889888888877777765432221111 0112246678999
Q ss_pred CCcEEEEEec---------CCcEEEEEccCCCccEEEEecCCCceeEEEecCC-----------------CCeeEEeeec
Q 021121 204 DDCLIASASV---------DKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPH-----------------RRNLLASCSY 257 (317)
Q Consensus 204 ~~~~l~~~~~---------d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------~~~~l~~~~~ 257 (317)
++.++++... -+..++|+-...++|...+.....+...+.|+|- .+..++.+ .
T Consensus 241 dG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA-t 319 (434)
T KOG1009|consen 241 DGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA-T 319 (434)
T ss_pred CCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEe-e
Confidence 8988887642 1245677766666677777766666666666651 12134444 4
Q ss_pred CCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121 258 DMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 258 d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
.+.+.+||.++.+++...-.-|-..|++++|+++ +..|+..+.||...+-.++.
T Consensus 320 ~~svyvydtq~~~P~~~v~nihy~~iTDiaws~d-g~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 320 KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDD-GSVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred cceEEEeccccccceEEEeeeeeeeecceeecCC-CcEEEEeccCCceEEEEEcc
Confidence 5679999999988776667778999999999999 88999999999887765544
No 157
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=2.3e-25 Score=183.33 Aligned_cols=290 Identities=17% Similarity=0.284 Sum_probs=224.5
Q ss_pred eeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEE
Q 021121 10 GYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYD 89 (317)
Q Consensus 10 v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~ 89 (317)
-+...|+| ++.++++.+. .|..++|.......-.......+|...|.+++|.|.|+ +|++.+.|-+-|++-
T Consensus 319 F~g~lw~~--n~~~ii~~g~------~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGe-flLsvs~DQTTRlFa 389 (764)
T KOG1063|consen 319 FWGGLWSP--NSNVIIAHGR------TGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFA 389 (764)
T ss_pred eeeEEEcC--CCCEEEEecc------cCcEEEEeccCccceeeccccccccccceeeeecCCCC-EEEEeccccceeeec
Confidence 56788999 4556666554 89999999443332222333348999999999999995 888999999999987
Q ss_pred eC-CCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC------------------------------
Q 021121 90 TA-LPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR------------------------------ 138 (317)
Q Consensus 90 ~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~------------------------------ 138 (317)
-- .......+..-+-|.-..+|+++-+.. ..+++|.....+++|+...
T Consensus 390 ~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLG 468 (764)
T KOG1063|consen 390 RWGRQQEWHEIARPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALG 468 (764)
T ss_pred ccccccceeeecccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccccccc
Confidence 54 222234444556788899999998753 3799999999999997631
Q ss_pred -------------Cc---------------------------------eeEEeeccccceEEEEEecCCCCeEEEEeCCC
Q 021121 139 -------------PT---------------------------------SVRTFKEHAYCVYNATWNPRHSDVFCSASGDC 172 (317)
Q Consensus 139 -------------~~---------------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 172 (317)
|. .++++.+|...|++++.+|+ ++++++++...
T Consensus 469 LSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~-gnliASaCKS~ 547 (764)
T KOG1063|consen 469 LSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPT-GNLIASACKSS 547 (764)
T ss_pred ccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCC-CCEEeehhhhC
Confidence 00 01123468889999999999 99999987653
Q ss_pred -----eEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCcc---EEEEecCCCceeEEEe
Q 021121 173 -----TLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVP---IAVLNGHGYAVRKVKF 244 (317)
Q Consensus 173 -----~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---~~~~~~~~~~v~~~~~ 244 (317)
.|++|+..+-.....+..|.-.|+.++|+| ++++|++.+.|.++.+|........ ....+.|..-|+.+.|
T Consensus 548 ~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW 626 (764)
T KOG1063|consen 548 LKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSW 626 (764)
T ss_pred CccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEccc
Confidence 499999998888888999999999999999 9999999999999999988654322 2336789999999999
Q ss_pred cCCCCeeEEeeecCCeEEEEecccc--cceee-eeecccceeEeEEEEeccC----CeEEEeecCCcEEEEecCC
Q 021121 245 SPHRRNLLASCSYDMTVCLWDFMVE--DALVG-RYDHHTEFAVGVDMSVLVE----GLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 245 ~~~~~~~l~~~~~d~~i~vwd~~~~--~~~~~-~~~~~~~~v~~~~~~~~~~----~~l~s~~~dg~i~~w~~~~ 312 (317)
+|++. +++|+|.|.+|++|..... +...+ ....+..+|+.+++.|-.. ..++.|-..|.|.+|+...
T Consensus 627 ~pde~-~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~ 700 (764)
T KOG1063|consen 627 SPDEK-YFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKR 700 (764)
T ss_pred Ccccc-eeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEeccc
Confidence 99998 5999999999999998776 32222 3446788999999987522 2677788999999999763
No 158
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.95 E-value=2.7e-25 Score=167.58 Aligned_cols=274 Identities=18% Similarity=0.300 Sum_probs=211.2
Q ss_pred eEEEEecCCCCeEEEEEecccccccCceEEEEecCCCC-------C---cceeeeeecCCCCeeEEEec-------CCCC
Q 021121 11 YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAA-------P---ALTELVAFDTADGVYDLAWS-------ESHD 73 (317)
Q Consensus 11 ~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~-------~---~~~~~~~~~~~~~v~~~~~~-------~~~~ 73 (317)
..+.|+| ++.-+.+... |..+.+|++.... + .......+.....|...+|- |+.
T Consensus 53 kgckWSP--DGSciL~~se------dn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t- 123 (406)
T KOG2919|consen 53 KGCKWSP--DGSCILSLSE------DNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST- 123 (406)
T ss_pred ccceeCC--CCceEEeecc------cCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcc-
Confidence 4688999 5666666655 8899999986431 1 12233334566778888886 454
Q ss_pred CeEEEEEcCCeEEEEEeCCCCCCCCceeec--cCCc---ceEEEEEecCCCCEEEEEcCCCEEEEEEc-CCCceeEE---
Q 021121 74 SLLIAAVADGSVKIYDTALPPTANPIRSLH--EHTR---EVHSADYNPTRRDSFITSSWDDTVKLWTV-DRPTSVRT--- 144 (317)
Q Consensus 74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~--~~~~---~v~~~~~~~~~~~~l~~~~~dg~v~iwd~-~~~~~~~~--- 144 (317)
.++++.+.+.-|++||.-++ +....+. .|.. ...+++|+|||. .|++|. ...|+++|+ +.|.....
T Consensus 124 ~l~a~ssr~~PIh~wdaftG---~lraSy~~ydh~de~taAhsL~Fs~DGe-qlfaGy-krcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 124 NLFAVSSRDQPIHLWDAFTG---KLRASYRAYDHQDEYTAAHSLQFSPDGE-QLFAGY-KRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred ceeeeccccCceeeeecccc---ccccchhhhhhHHhhhhheeEEecCCCC-eEeecc-cceEEEeeccCCCCCCcchhh
Confidence 68999999999999999877 3333333 2333 456899999998 666655 689999999 44422111
Q ss_pred ----eeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEec-CCcEEE
Q 021121 145 ----FKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASV-DKSIKI 219 (317)
Q Consensus 145 ----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-d~~i~v 219 (317)
-.+..+.+.+++|+|.+..+++.++....+-||.-..+.++..+-+|.+.|+.+.|.+ +++.|.+|.. |..|..
T Consensus 199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~ 277 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE-DGNKLFSGARKDDKILC 277 (406)
T ss_pred hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc-CcCeecccccCCCeEEE
Confidence 1234678999999999888999999999999999888899999999999999999999 8888888875 668999
Q ss_pred EEccCCCccEEEEecCCC-ceeEEEe--cCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeE
Q 021121 220 WDVRNYRVPIAVLNGHGY-AVRKVKF--SPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLL 296 (317)
Q Consensus 220 ~d~~~~~~~~~~~~~~~~-~v~~~~~--~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 296 (317)
||+|..+.++..+..|.. .-..|.| .|+++ +|++|+.||.|++||+......+..+..+...++.++++|. -.++
T Consensus 278 WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~-mpil 355 (406)
T KOG2919|consen 278 WDIRYSRDPVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPI-MPIL 355 (406)
T ss_pred EeehhccchhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCCCCCcccccccccccccceecCcc-ccee
Confidence 999998888888777755 3344444 67888 79999999999999999855566788889999999999997 5677
Q ss_pred EEeec
Q 021121 297 ASTGW 301 (317)
Q Consensus 297 ~s~~~ 301 (317)
++++.
T Consensus 356 atssG 360 (406)
T KOG2919|consen 356 ATSSG 360 (406)
T ss_pred eeccC
Confidence 77763
No 159
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=2.8e-25 Score=183.73 Aligned_cols=248 Identities=20% Similarity=0.311 Sum_probs=203.9
Q ss_pred eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCC--CCCeEEEEEc
Q 021121 4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSES--HDSLLIAAVA 81 (317)
Q Consensus 4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~ 81 (317)
++....+++++.|| +++.++++.. -|+++||++..-.. ......|...|.|+.|+.. +.++||+++.
T Consensus 456 ~d~r~G~R~~~vSp--~gqhLAsGDr------~GnlrVy~Lq~l~~---~~~~eAHesEilcLeyS~p~~~~kLLASasr 524 (1080)
T KOG1408|consen 456 CDSRFGFRALAVSP--DGQHLASGDR------GGNLRVYDLQELEY---TCFMEAHESEILCLEYSFPVLTNKLLASASR 524 (1080)
T ss_pred cCcccceEEEEECC--CcceecccCc------cCceEEEEehhhhh---hhheecccceeEEEeecCchhhhHhhhhccC
Confidence 45667899999999 7999999886 89999999987652 1222368999999999853 3468999999
Q ss_pred CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCC-CCEEEEEcCCCEEEEEEcCCCceeEEee-----ccccceEEE
Q 021121 82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTR-RDSFITSSWDDTVKLWTVDRPTSVRTFK-----EHAYCVYNA 155 (317)
Q Consensus 82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~-----~~~~~v~~~ 155 (317)
|..|.|||+.. ...++.++.+|...|+++.|...| +..+++++.|..|.+--.+.......+. .....++.+
T Consensus 525 dRlIHV~Dv~r--ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm 602 (1080)
T KOG1408|consen 525 DRLIHVYDVKR--NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDM 602 (1080)
T ss_pred CceEEEEeccc--ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEe
Confidence 99999999874 467788899999999999997766 3378899999877543322111111121 124568999
Q ss_pred EEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc---CccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEE
Q 021121 156 TWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA---HEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVL 232 (317)
Q Consensus 156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 232 (317)
+..|. .+++++++.|..|+|||+++++..+.+++ |++....+...| .+.++++...|.++.++|..+++. +...
T Consensus 603 ~Vdp~-~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEc-vA~m 679 (1080)
T KOG1408|consen 603 AVDPT-SKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGEC-VAQM 679 (1080)
T ss_pred eeCCC-cceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchh-hhhh
Confidence 99998 89999999999999999999999999874 556678899999 999999999999999999999874 8888
Q ss_pred ecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121 233 NGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV 268 (317)
Q Consensus 233 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~ 268 (317)
.+|...|+.+.|.+|.++ |++.+.||.|.||.+..
T Consensus 680 ~GHsE~VTG~kF~nDCkH-lISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 680 TGHSEAVTGVKFLNDCKH-LISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cCcchheeeeeecccchh-heeecCCceEEEEECch
Confidence 999999999999999995 88899999999999864
No 160
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.94 E-value=3.1e-24 Score=159.57 Aligned_cols=256 Identities=17% Similarity=0.284 Sum_probs=191.5
Q ss_pred ecCcceeEEEEecCCCCeEEEEEecccc-cccCceEEEEecCCCCCc-----ceeeeee--cCCCCeeEEEecCCCCCeE
Q 021121 5 KTPFNGYSVKFSPFYESRLAVATAQNFG-ILGNGRVHVLDLSPAAPA-----LTELVAF--DTADGVYDLAWSESHDSLL 76 (317)
Q Consensus 5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~-~~~~g~i~i~~~~~~~~~-----~~~~~~~--~~~~~v~~~~~~~~~~~~l 76 (317)
.+...|..++-+|. +.+++++...... ...--..-||.+.+.... +..+..+ .+-+.|.|+.|.|++. .+
T Consensus 61 h~agEvw~las~P~-d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~-kl 138 (370)
T KOG1007|consen 61 HHAGEVWDLASSPF-DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD-KL 138 (370)
T ss_pred cCCcceehhhcCCC-CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC-ee
Confidence 36688999999997 4455555443211 111135789999765432 2333333 2445899999999885 55
Q ss_pred EEEEcCCeEEEEEeCCCCCCCCceee-----ccCCcceEEEEEec--CCCCEEEEEcCCCEEEEEEcCCCceeEEee-cc
Q 021121 77 IAAVADGSVKIYDTALPPTANPIRSL-----HEHTREVHSADYNP--TRRDSFITSSWDDTVKLWTVDRPTSVRTFK-EH 148 (317)
Q Consensus 77 ~~~~~dg~i~v~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~--~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~ 148 (317)
++-. |..|.+|++...... ...+ ..+....++-+|+| ++. .+++. .|+++..||+++.++...+. +|
T Consensus 139 asm~-dn~i~l~~l~ess~~--vaev~ss~s~e~~~~ftsg~WspHHdgn-qv~tt-~d~tl~~~D~RT~~~~~sI~dAH 213 (370)
T KOG1007|consen 139 ASMD-DNNIVLWSLDESSKI--VAEVLSSESAEMRHSFTSGAWSPHHDGN-QVATT-SDSTLQFWDLRTMKKNNSIEDAH 213 (370)
T ss_pred EEec-cCceEEEEcccCcch--heeecccccccccceecccccCCCCccc-eEEEe-CCCcEEEEEccchhhhcchhhhh
Confidence 5443 888999999876331 2111 23566788889998 343 55554 48999999999887766654 68
Q ss_pred ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC-CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCC-
Q 021121 149 AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM-GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR- 226 (317)
Q Consensus 149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~- 226 (317)
...|..+.|+|+...+|++|+.||.|++||.|.. .++..+.+|...+.++.|+|...+++++|+.|..|.+|....-.
T Consensus 214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSS 293 (370)
T KOG1007|consen 214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSS 293 (370)
T ss_pred cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccc
Confidence 8889999999997889999999999999999875 56788899999999999999889999999999999999654211
Q ss_pred ---------------------------ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecc
Q 021121 227 ---------------------------VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFM 267 (317)
Q Consensus 227 ---------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~ 267 (317)
-.+.++..|...|++++|+.-.+.++|+-+.||.+.|=.+.
T Consensus 294 E~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 294 EQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 02345677999999999999999889999999999886654
No 161
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4e-24 Score=168.30 Aligned_cols=245 Identities=12% Similarity=0.144 Sum_probs=198.7
Q ss_pred CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC
Q 021121 59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR 138 (317)
Q Consensus 59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 138 (317)
..++|+++.|+|.. .+|++++.|+++++|.++.. ....+..+.-...+|.+.+|.|+|...+++++....++.||+.+
T Consensus 212 s~~~I~sv~FHp~~-plllvaG~d~~lrifqvDGk-~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 212 SHGGITSVQFHPTA-PLLLVAGLDGTLRIFQVDGK-VNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred CcCCceEEEecCCC-ceEEEecCCCcEEEEEecCc-cChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence 45689999999987 59999999999999999854 34456666666889999999999987899999999999999998
Q ss_pred CceeEE--eecc-ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCC
Q 021121 139 PTSVRT--FKEH-AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDK 215 (317)
Q Consensus 139 ~~~~~~--~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~ 215 (317)
.+..+. ..++ ...+.....+|+ +++|+..+..|.|.+....+++.+..++ .++.+..+.|+. +++.|++++.+|
T Consensus 290 ak~~k~~~~~g~e~~~~e~FeVShd-~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~G 366 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSMERFEVSHD-SNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTG 366 (514)
T ss_pred cccccccCCCCcccchhheeEecCC-CCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCc
Confidence 765432 2233 235778888998 8899999999999999999999998887 567899999998 889999989999
Q ss_pred cEEEEEccCCCccEEEEecCC-CceeEEEecCCCCeeEEeeecCCeEEEEeccccc-----ceeeeeecccceeEeEEEE
Q 021121 216 SIKIWDVRNYRVPIAVLNGHG-YAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED-----ALVGRYDHHTEFAVGVDMS 289 (317)
Q Consensus 216 ~i~v~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~-----~~~~~~~~~~~~v~~~~~~ 289 (317)
.|.+||++.... +..+.... -.-++++.++++. +||+|+..|.|.|||..+.. .++..+..-...|++|+|+
T Consensus 367 eV~v~nl~~~~~-~~rf~D~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn 444 (514)
T KOG2055|consen 367 EVYVWNLRQNSC-LHRFVDDGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFN 444 (514)
T ss_pred eEEEEecCCcce-EEEEeecCccceeeeeecCCCc-eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeC
Confidence 999999998754 55554322 2346788889998 79999999999999965422 3556666677889999999
Q ss_pred eccCCeEEEee--cCCcEEEEecC
Q 021121 290 VLVEGLLASTG--WDELVYVWQQG 311 (317)
Q Consensus 290 ~~~~~~l~s~~--~dg~i~~w~~~ 311 (317)
|+ .++||.++ .+..+|+-.+.
T Consensus 445 ~d-~qiLAiaS~~~knalrLVHvP 467 (514)
T KOG2055|consen 445 HD-AQILAIASRVKKNALRLVHVP 467 (514)
T ss_pred cc-hhhhhhhhhccccceEEEecc
Confidence 99 78887776 46778776654
No 162
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.93 E-value=9.2e-24 Score=163.30 Aligned_cols=253 Identities=19% Similarity=0.309 Sum_probs=192.2
Q ss_pred CceEEEEecCCCCCcceee-eeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCC----CCCCceeeccCCcceE
Q 021121 36 NGRVHVLDLSPAAPALTEL-VAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPP----TANPIRSLHEHTREVH 110 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~----~~~~~~~~~~~~~~v~ 110 (317)
.|...+.-+.+.+..-... ..-+|.++|..++|+|.++..+|+|+.|.+|.||.+.... ..+++..+.+|...|-
T Consensus 56 Ggaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg 135 (472)
T KOG0303|consen 56 GGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVG 135 (472)
T ss_pred CcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEE
Confidence 4456665555433211111 1127999999999999988999999999999999987642 2356778899999999
Q ss_pred EEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc
Q 021121 111 SADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA 190 (317)
Q Consensus 111 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 190 (317)
-++|+|...+.|++++.|..|.+||+.+++.+..+. |...|+++.|+.+ +.++++.+.|..|+|||.++++.+..-.+
T Consensus 136 ~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~d-Gs~l~TtckDKkvRv~dpr~~~~v~e~~~ 213 (472)
T KOG0303|consen 136 LVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRD-GSLLCTTCKDKKVRVIDPRRGTVVSEGVA 213 (472)
T ss_pred EEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccC-CceeeeecccceeEEEcCCCCcEeeeccc
Confidence 999999998899999999999999999999988888 9999999999998 89999999999999999999998887766
Q ss_pred Cccc-eEEEEecCCCCcEEEEEe---cCCcEEEEEccCCCccEEEEe-cCCCceeEEEecCCCCeeEEeeecCCeEEEEe
Q 021121 191 HEFE-ILACDWNKYDDCLIASAS---VDKSIKIWDVRNYRVPIAVLN-GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265 (317)
Q Consensus 191 ~~~~-v~~i~~~~~~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd 265 (317)
|.+. ...+.|-. ++.++.+|- .+..+-+||..+.+.++.... .....|.---|.|+..-+.++|-.|+.|+-|.
T Consensus 214 heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 214 HEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred ccCCCcceeEEec-cCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEE
Confidence 7643 34455665 777555543 456899999988877654432 23345555567788775566777999999999
Q ss_pred cccccceeeeeecc--cceeEeEEEEec
Q 021121 266 FMVEDALVGRYDHH--TEFAVGVDMSVL 291 (317)
Q Consensus 266 ~~~~~~~~~~~~~~--~~~v~~~~~~~~ 291 (317)
+....+.+..+... ..+-.+|.|-|.
T Consensus 293 it~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 293 ITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred ecCCCceeEEecccccCCcccccccccc
Confidence 98876444443322 234455666654
No 163
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=4.7e-24 Score=174.17 Aligned_cols=253 Identities=18% Similarity=0.332 Sum_probs=184.0
Q ss_pred ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121 5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGS 84 (317)
Q Consensus 5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 84 (317)
.|...|+.+.|-| .+.+|+.+.+ |.++++||++...-. ..-..++|...|.+++|.|.++..|++|+.||.
T Consensus 98 aH~nAifDl~wap-ge~~lVsasG-------DsT~r~Wdvk~s~l~-G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ 168 (720)
T KOG0321|consen 98 AHKNAIFDLKWAP-GESLLVSASG-------DSTIRPWDVKTSRLV-GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGE 168 (720)
T ss_pred cccceeEeeccCC-CceeEEEccC-------Cceeeeeeeccceee-cceeecccccccchhhhccCCCcceeeccCCCc
Confidence 3778899999999 3555555554 889999999877622 122345899999999999999999999999999
Q ss_pred EEEEEeCCCCC---------------C--CC-------ceeeccCCcceEE---EEEecCCCCEEEEEcC-CCEEEEEEc
Q 021121 85 VKIYDTALPPT---------------A--NP-------IRSLHEHTREVHS---ADYNPTRRDSFITSSW-DDTVKLWTV 136 (317)
Q Consensus 85 i~v~~~~~~~~---------------~--~~-------~~~~~~~~~~v~~---~~~~~~~~~~l~~~~~-dg~v~iwd~ 136 (317)
|.|||+..... . .+ ......+...|.+ +-+..|.. .|++++. |+.|+|||+
T Consensus 169 illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDL 247 (720)
T KOG0321|consen 169 ILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDL 247 (720)
T ss_pred EEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEee
Confidence 99999875410 0 01 1111234444444 44555555 7888887 999999999
Q ss_pred CCCceeEE--------eecc---ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCC--ceeeeccCccc--eEEEEec
Q 021121 137 DRPTSVRT--------FKEH---AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMG--STMIIPAHEFE--ILACDWN 201 (317)
Q Consensus 137 ~~~~~~~~--------~~~~---~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~--v~~i~~~ 201 (317)
+....... +..| ...+.++..... +.++.+.+.|+.|++|++.+.. ++..+.++... -..-..+
T Consensus 248 Rk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss-Gt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lS 326 (720)
T KOG0321|consen 248 RKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS-GTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELS 326 (720)
T ss_pred cccccccccCCCcccCccCcccceeeeEEEEecCC-CCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecC
Confidence 87643322 2222 335777777777 5555555569999999998653 33333333221 1223457
Q ss_pred CCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccc
Q 021121 202 KYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE 269 (317)
Q Consensus 202 ~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~ 269 (317)
| ++.++++|+.|...++|.+.+.+.+...+.+|...|++++|.|....=++++++|..+++|++..+
T Consensus 327 p-d~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 327 P-DDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred C-CCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 7 999999999999999999999998899999999999999998865444788899999999998654
No 164
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.93 E-value=1.2e-23 Score=158.72 Aligned_cols=244 Identities=18% Similarity=0.260 Sum_probs=185.0
Q ss_pred CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCC---------CCceeec-cCCcceEEEEEe-------cCCCCEEEE
Q 021121 62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTA---------NPIRSLH-EHTREVHSADYN-------PTRRDSFIT 124 (317)
Q Consensus 62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~---------~~~~~~~-~~~~~v~~~~~~-------~~~~~~l~~ 124 (317)
-...+.|+||| ..|++-+.|..+++|++....-. +....++ .....|...+|. |+.. ++++
T Consensus 51 f~kgckWSPDG-SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~-l~a~ 128 (406)
T KOG2919|consen 51 FLKGCKWSPDG-SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN-LFAV 128 (406)
T ss_pred hhccceeCCCC-ceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccc-eeee
Confidence 35678999999 68999999999999998643100 0111111 235678888885 4444 8999
Q ss_pred EcCCCEEEEEEcCCCceeEEeec--ccc---ceEEEEEecCCCCeEEEEeCCCeEEEEeC-CCCCceee---e----ccC
Q 021121 125 SSWDDTVKLWTVDRPTSVRTFKE--HAY---CVYNATWNPRHSDVFCSASGDCTLRIWDV-REMGSTMI---I----PAH 191 (317)
Q Consensus 125 ~~~dg~v~iwd~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~---~----~~~ 191 (317)
.+.+.-|++||.-+|+....+.+ |.. ...+++|+|+ +..|++ +....|++||+ |.+..-.. + .+.
T Consensus 129 ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~D-Geqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPD-GEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred ccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCC-CCeEee-cccceEEEeeccCCCCCCcchhhhhcccccc
Confidence 99999999999999988777654 322 3578999999 666654 56779999999 44432111 1 123
Q ss_pred ccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeee-cCCeEEEEeccccc
Q 021121 192 EFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCS-YDMTVCLWDFMVED 270 (317)
Q Consensus 192 ~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~vwd~~~~~ 270 (317)
.+-+.+++|+|.+...++.|+....+-+|.-... .++..+-+|.+.|+.++|.++|.+ |++|+ .|-.|..||++...
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~llggh~gGvThL~~~edGn~-lfsGaRk~dkIl~WDiR~~~ 284 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCEDGNK-LFSGARKDDKILCWDIRYSR 284 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCCC-CceeeecccCCCeeeEEeccCcCe-ecccccCCCeEEEEeehhcc
Confidence 5568899999988889999999999888887664 468888899999999999999996 65665 57889999999988
Q ss_pred ceeeeeecccc-eeEeEEE--EeccCCeEEEeecCCcEEEEecCC
Q 021121 271 ALVGRYDHHTE-FAVGVDM--SVLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 271 ~~~~~~~~~~~-~v~~~~~--~~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
.++..+..|.. .-..|.| .|+ +++|++|+.||.|++||+..
T Consensus 285 ~pv~~L~rhv~~TNQRI~FDld~~-~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 285 DPVYALERHVGDTNQRILFDLDPK-GEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred chhhhhhhhccCccceEEEecCCC-CceeeccCCCccEEEEecCC
Confidence 77777777765 4445555 466 67999999999999999986
No 165
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7.1e-24 Score=159.76 Aligned_cols=207 Identities=17% Similarity=0.294 Sum_probs=163.0
Q ss_pred ceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce-----eEEeeccccceEEEEEecCCCCeEEEEeCCCe
Q 021121 99 IRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-----VRTFKEHAYCVYNATWNPRHSDVFCSASGDCT 173 (317)
Q Consensus 99 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 173 (317)
+..+++|...|++++|+.+|+ .|++++.|+.|++|+++.-.. ++. .-.-+-.+.+.|.|+-..+++++-...+
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhhccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCE
Confidence 346789999999999999999 999999999999999976321 111 1122357899999996667777777888
Q ss_pred EEEEeCCCCC---cee---------eeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeE
Q 021121 174 LRIWDVREMG---STM---------IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241 (317)
Q Consensus 174 i~i~d~~~~~---~~~---------~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~ 241 (317)
+++|.+...+ ... .-+.|...+..+-... ++.+|++++.|..|.+|+++ ++ .+..+......-+.
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq-~L~~idtnq~~n~~ 233 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQ-LLQSIDTNQSSNYD 233 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cc-eeeeeccccccccc
Confidence 9999875432 111 1123555666777766 88999999999999999999 44 47777766667788
Q ss_pred EEecCCCCeeEEeeecCCeEEEEeccccc-------ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121 242 VKFSPHRRNLLASCSYDMTVCLWDFMVED-------ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 242 ~~~~~~~~~~l~~~~~d~~i~vwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
.+.||+|+ ++++++..--|++|++--++ ..+..+.+|...|..++|+++ ...+++.+.||+.++||.+-
T Consensus 234 aavSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~-S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 234 AAVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS-STRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred eeeCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC-cceeEEEecCCcEEEeeccc
Confidence 99999999 79999988889999864332 234578899999999999998 88999999999999999864
No 166
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.3e-23 Score=158.29 Aligned_cols=275 Identities=17% Similarity=0.243 Sum_probs=191.3
Q ss_pred CeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCC-CCCeEEEEEcCCeEEEEEeCCCCCCCCc
Q 021121 21 SRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSES-HDSLLIAAVADGSVKIYDTALPPTANPI 99 (317)
Q Consensus 21 ~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~v~~~~~~~~~~~~ 99 (317)
..++++.+ +|.|++||..+.+ .+.... .++..++.++|... ++..+.+++.||+|++||++...+ ...
T Consensus 41 ~~vav~lS-------ngsv~lyd~~tg~-~l~~fk--~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e-~a~ 109 (376)
T KOG1188|consen 41 TAVAVSLS-------NGSVRLYDKGTGQ-LLEEFK--GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE-SAR 109 (376)
T ss_pred eeEEEEec-------CCeEEEEeccchh-hhheec--CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh-hhh
Confidence 34666666 8999999998854 233333 57777888998764 567899999999999999987632 233
Q ss_pred eeeccCC-cceEEEEEecCCCCEEEEEc----CCCEEEEEEcCCCce-eEEe-eccccceEEEEEecCCCCeEEEEeCCC
Q 021121 100 RSLHEHT-REVHSADYNPTRRDSFITSS----WDDTVKLWTVDRPTS-VRTF-KEHAYCVYNATWNPRHSDVFCSASGDC 172 (317)
Q Consensus 100 ~~~~~~~-~~v~~~~~~~~~~~~l~~~~----~dg~v~iwd~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg 172 (317)
.....+. .+..|++.+-.++ .+++|. .+-.|.+||++..+. +..+ ..|...|++++|+|.++++|++|+.||
T Consensus 110 ~~~~~~~~~~f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG 188 (376)
T KOG1188|consen 110 ISWTQQSGTPFICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDG 188 (376)
T ss_pred eeccCCCCCcceEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccc
Confidence 3344444 5667777665555 677664 367899999998766 5444 468999999999999999999999999
Q ss_pred eEEEEeCCCCC---ceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecC------------CC
Q 021121 173 TLRIWDVREMG---STMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH------------GY 237 (317)
Q Consensus 173 ~i~i~d~~~~~---~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~------------~~ 237 (317)
.|.+||+.... .+...-.+...|.++.|....-+.|.+-+...+..+|+++.+.. ...+... ..
T Consensus 189 LvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~-~~~~~~~~~~~~d~r~~~~~d 267 (376)
T KOG1188|consen 189 LVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE-ETWLENPDVSADDLRKEDNCD 267 (376)
T ss_pred eEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh-hhcccCccchhhhHHhhhhhh
Confidence 99999997652 23333347778999999973435688888899999999987663 2222111 01
Q ss_pred ceeEEEecCCCCeeEEeeec-CCeEEEEeccc---cc--ceeeeee-cccceeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121 238 AVRKVKFSPHRRNLLASCSY-DMTVCLWDFMV---ED--ALVGRYD-HHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ 310 (317)
Q Consensus 238 ~v~~~~~~~~~~~~l~~~~~-d~~i~vwd~~~---~~--~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~ 310 (317)
.+-. +.+|.+..+++.++. -+...++-+.. +. .....+. +|..-|+++.|... +.++.|||.||.+.+|..
T Consensus 268 Y~I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~-~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 268 YVIN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVK-NDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred heee-cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcc-cceeeccCCCceEEEEec
Confidence 1111 123433334444443 55555554432 21 2223444 47788899999876 789999999999999995
No 167
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=8e-23 Score=158.39 Aligned_cols=293 Identities=15% Similarity=0.207 Sum_probs=223.0
Q ss_pred eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCC----CCcceeeeeecCCCCeeEEEecCCCCCeEEEE
Q 021121 4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPA----APALTELVAFDTADGVYDLAWSESHDSLLIAA 79 (317)
Q Consensus 4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 79 (317)
..|...|.++.||. +++++++++. |-++++|++... .++...+....|...|.|++|.... ..+.+|
T Consensus 53 ~~H~GCiNAlqFS~--N~~~L~SGGD------D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N-~~~~SG 123 (609)
T KOG4227|consen 53 REHTGCINALQFSH--NDRFLASGGD------DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN-RFLYSG 123 (609)
T ss_pred hhhccccceeeecc--CCeEEeecCC------cceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC-eeEecC
Confidence 34778899999999 6999999987 889999998642 2223334444677899999999765 799999
Q ss_pred EcCCeEEEEEeCCCCCCCCceeec--cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc-eeE--EeeccccceEE
Q 021121 80 VADGSVKIYDTALPPTANPIRSLH--EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT-SVR--TFKEHAYCVYN 154 (317)
Q Consensus 80 ~~dg~i~v~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~--~~~~~~~~v~~ 154 (317)
..+++|..-|+++. +.+..+. ...+.|+.+..+|..+ .|++.+.++.|.+||.+..+ ... ...........
T Consensus 124 ~~~~~VI~HDiEt~---qsi~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t 199 (609)
T KOG4227|consen 124 ERWGTVIKHDIETK---QSIYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYT 199 (609)
T ss_pred CCcceeEeeecccc---eeeeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceeeecCCCcccee
Confidence 99999999999875 3333332 3456999999999966 99999999999999998765 221 22234556889
Q ss_pred EEEecCCCCeEEEEeCCCeEEEEeCCCCCc-ee------eeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCc
Q 021121 155 ATWNPRHSDVFCSASGDCTLRIWDVREMGS-TM------IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV 227 (317)
Q Consensus 155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~------~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 227 (317)
+.|+|..+.+|++.+..+-+-+||.+.... +. .++.....-.++.|+| +|+.+++--....-.+||+-+.++
T Consensus 200 ~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~-~G~Q~msiRR~~~P~~~D~~S~R~ 278 (609)
T KOG4227|consen 200 AEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP-SGNQFMSIRRGKCPLYFDFISQRC 278 (609)
T ss_pred eeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC-CCCeehhhhccCCCEEeeeecccc
Confidence 999999899999999999999999986532 11 1122222346788999 888888776666677899988776
Q ss_pred cEEEEecCC-------CceeEEEecCCCCeeEEeeecCCeEEEEeccccc----------------------ceeeeeec
Q 021121 228 PIAVLNGHG-------YAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED----------------------ALVGRYDH 278 (317)
Q Consensus 228 ~~~~~~~~~-------~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~----------------------~~~~~~~~ 278 (317)
++..+. |+ ..+.+++|..+.. +++|+.+-.|++|.+.... ..+..+.+
T Consensus 279 ~V~k~D-~N~~GY~N~~T~KS~~F~~D~~--v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrG 355 (609)
T KOG4227|consen 279 FVLKSD-HNPNGYCNIKTIKSMTFIDDYT--VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRG 355 (609)
T ss_pred eeEecc-CCCCcceeeeeeeeeeeeccee--eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEec
Confidence 665554 22 3577888986654 9999999999999875311 12356789
Q ss_pred ccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121 279 HTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP 314 (317)
Q Consensus 279 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~ 314 (317)
|.+.++.+.|+|. ..+|++.|-...+++|.-...|
T Consensus 356 HRSv~NQVRF~~H-~~~l~SSGVE~~~KlWS~~r~P 390 (609)
T KOG4227|consen 356 HRSVPNQVRFSQH-NNLLVSSGVENSFKLWSDHRLP 390 (609)
T ss_pred ccccccceeecCC-cceEeccchhhheeccccccCC
Confidence 9999999999998 7899999999999999765443
No 168
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.92 E-value=5.1e-21 Score=162.64 Aligned_cols=294 Identities=28% Similarity=0.437 Sum_probs=223.2
Q ss_pred eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEe-cCCCCCeEEEEEc-
Q 021121 4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAW-SESHDSLLIAAVA- 81 (317)
Q Consensus 4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~~~- 81 (317)
..+...+.++.|.+ .+..+...+. ++.+.+|+..........+.. .+...+..+.+ ++++...++..+.
T Consensus 62 ~~~~~~i~~~~~~~--~~~~~~~~~~------d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (466)
T COG2319 62 RGHEDSITSIAFSP--DGELLLSGSS------DGTIKLWDLDNGEKLIKSLEG-LHDSSVSKLALSSPDGNSILLASSSL 132 (466)
T ss_pred eeccceEEEEEECC--CCcEEEEecC------CCcEEEEEcCCCceeEEEEec-cCCCceeeEEEECCCcceEEeccCCC
Confidence 34678899999999 5665555553 899999999876411222221 11136777777 7777434555444
Q ss_pred CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcC-CCEEEEEEcCCCceeEEeeccccceEEEEEecC
Q 021121 82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW-DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR 160 (317)
Q Consensus 82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (317)
++.+.+|+... .......+..|...|..++|+|++. .+++++. |+.+++|++..+..+..+..|...+.+++|+|+
T Consensus 133 d~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 209 (466)
T COG2319 133 DGTVKLWDLST--PGKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPD 209 (466)
T ss_pred CccEEEEEecC--CCeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCC
Confidence 89999999875 1256677888999999999999998 7888875 999999999998888888889999999999988
Q ss_pred CCC-eEEEEeCCCeEEEEeCCCCCcee-eeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCc
Q 021121 161 HSD-VFCSASGDCTLRIWDVREMGSTM-IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYA 238 (317)
Q Consensus 161 ~~~-~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 238 (317)
+. ++++++.|+.+++||.+.+.... .+..|.... ...|+| ++..+++++.|+.+++|+.+...........|...
T Consensus 210 -~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 286 (466)
T COG2319 210 -GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS 286 (466)
T ss_pred -cceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEEecCCcc
Confidence 54 56556999999999988777766 577777664 338998 77888899999999999999766434444678899
Q ss_pred eeEEEecCCCCeeEEeeecCCeEEEEecccccceeeee-ecccceeEeEEEEeccCCeEEEe-ecCCcEEEEecCCCC
Q 021121 239 VRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRY-DHHTEFAVGVDMSVLVEGLLAST-GWDELVYVWQQGMDP 314 (317)
Q Consensus 239 v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~-~~dg~i~~w~~~~~~ 314 (317)
+.++.|+|++. .+++++.|+.+++||..+........ ..|...+..+.| +..+..++.+ ..|+.+.+|++....
T Consensus 287 v~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 287 VLSVAFSPDGK-LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEEEECCCCC-EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCc
Confidence 99999999777 46668888889999888776332222 377778999999 5322455555 688999999987654
No 169
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.92 E-value=2.6e-23 Score=157.18 Aligned_cols=252 Identities=17% Similarity=0.307 Sum_probs=194.2
Q ss_pred cCCCCeeEEEecC----CCCCeEEEEEcCCeEEEEEeCCCCCCCCceeec--cCCcceEEEEEecC---CCCEEEEEcCC
Q 021121 58 DTADGVYDLAWSE----SHDSLLIAAVADGSVKIYDTALPPTANPIRSLH--EHTREVHSADYNPT---RRDSFITSSWD 128 (317)
Q Consensus 58 ~~~~~v~~~~~~~----~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~---~~~~l~~~~~d 128 (317)
+|..+|..++|++ +.+..+++.+. ..+.+|+.........+..+. .|.+....++|+-+ +..++++++.-
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~ 114 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYL 114 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecce
Confidence 6788999999985 33346666654 579999987653223333322 46778888888643 34489999999
Q ss_pred CEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee---ccCccceEEEEecCCCC
Q 021121 129 DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII---PAHEFEILACDWNKYDD 205 (317)
Q Consensus 129 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~i~~~~~~~ 205 (317)
|.|+|.|+.+++....+.+|...|+.+.+.|+.++++++++.|..|++|++++..++..+ .+|...|.++.|++ ++
T Consensus 115 GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~g 193 (385)
T KOG1034|consen 115 GVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DG 193 (385)
T ss_pred eEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC-CC
Confidence 999999999999999999999999999999998999999999999999999999988876 47899999999999 99
Q ss_pred cEEEEEecCCcEEEEEccCCCc--------------------------cE-EEEecCCCceeEEEecCCCCeeEEeeecC
Q 021121 206 CLIASASVDKSIKIWDVRNYRV--------------------------PI-AVLNGHGYAVRKVKFSPHRRNLLASCSYD 258 (317)
Q Consensus 206 ~~l~~~~~d~~i~v~d~~~~~~--------------------------~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 258 (317)
.+|++++.|.+|++|++...+. +. .+-..|...|.|+.|- |. ++++-+-+
T Consensus 194 d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd-~ilSksce 270 (385)
T KOG1034|consen 194 DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GD-FILSKSCE 270 (385)
T ss_pred CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hh-heeecccC
Confidence 9999999999999999973210 00 1223466777788885 44 78888889
Q ss_pred CeEEEEeccccc-------------ceeeeeecccceeEeEEEE--eccCCeEEEeecCCcEEEEecCCCCC
Q 021121 259 MTVCLWDFMVED-------------ALVGRYDHHTEFAVGVDMS--VLVEGLLASTGWDELVYVWQQGMDPR 315 (317)
Q Consensus 259 ~~i~vwd~~~~~-------------~~~~~~~~~~~~v~~~~~~--~~~~~~l~s~~~dg~i~~w~~~~~~~ 315 (317)
+.|..|....-+ .++.++.-....|.-+.|. |. .++||.|...|.|.+||++..+.
T Consensus 271 naI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~-~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 271 NAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW-QKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred ceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH-HHHHhhccCCCcEEEEECCCCCC
Confidence 999999872211 2233444444556666554 54 56999999999999999987543
No 170
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.92 E-value=1.7e-22 Score=169.86 Aligned_cols=256 Identities=22% Similarity=0.313 Sum_probs=195.8
Q ss_pred eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCc-ce--eeeeecCCCCeeEEEecCCCC-CeEEEE
Q 021121 4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPA-LT--ELVAFDTADGVYDLAWSESHD-SLLIAA 79 (317)
Q Consensus 4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~-~~--~~~~~~~~~~v~~~~~~~~~~-~~l~~~ 79 (317)
|+.+..|+++.|+|..+..++.+.. +|.|.+||+...... .. ......|..+++.+.|..+-. .-++++
T Consensus 239 ~~~~s~v~~~~f~p~~p~ll~gG~y-------~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ 311 (555)
T KOG1587|consen 239 LESPSEVTCLKFCPFDPNLLAGGCY-------NGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSL 311 (555)
T ss_pred EecCCceeEEEeccCCcceEEeecc-------CceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEE
Confidence 5678899999999985555555554 999999999876642 12 222336889999999976421 358888
Q ss_pred EcCCeEEEEEeCCCCCCCCceee---c------cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc--------ee
Q 021121 80 VADGSVKIYDTALPPTANPIRSL---H------EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT--------SV 142 (317)
Q Consensus 80 ~~dg~i~v~~~~~~~~~~~~~~~---~------~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--------~~ 142 (317)
+.||.|..|+++.-........+ . .....+++++|.+...+.++.|+.+|.|.--+-...+ ..
T Consensus 312 ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~ 391 (555)
T KOG1587|consen 312 SSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGH 391 (555)
T ss_pred ecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccc
Confidence 99999999987754221111111 1 1234688999999888899999999999874333221 12
Q ss_pred EEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCC-CCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEE
Q 021121 143 RTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR-EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWD 221 (317)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d 221 (317)
..+..|.++|+++.++|-....+.+++ |.++++|... ...++..+..+...+++++|||.....++++..||.|.+||
T Consensus 392 ~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWD 470 (555)
T KOG1587|consen 392 STFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWD 470 (555)
T ss_pred ccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhh
Confidence 345568899999999999677777776 9999999988 66777788778888999999998888999999999999999
Q ss_pred ccCCC-ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121 222 VRNYR-VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV 268 (317)
Q Consensus 222 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~ 268 (317)
+.... .|+.....+....+.+.|++.|+ +|++|...|.+.+|++..
T Consensus 471 Ll~~~~~Pv~s~~~~~~~l~~~~~s~~g~-~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 471 LLQDDEEPVLSQKVCSPALTRVRWSPNGK-LLAVGDANGTTHILKLSE 517 (555)
T ss_pred hhccccCCcccccccccccceeecCCCCc-EEEEecCCCcEEEEEcCc
Confidence 97643 45666655667788899999898 799999999999999864
No 171
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=2.2e-22 Score=173.26 Aligned_cols=291 Identities=18% Similarity=0.247 Sum_probs=207.7
Q ss_pred cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeee----cCCCCeeEEEecC-CCCCeEEEEEcC
Q 021121 8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAF----DTADGVYDLAWSE-SHDSLLIAAVAD 82 (317)
Q Consensus 8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~-~~~~~l~~~~~d 82 (317)
.+...+.|+|. ...++++.. .-.|++||.+.... +..+ .....|+.+.+-. ++..++++|+.|
T Consensus 1065 ~~pk~~~~hpf-~p~i~~ad~-------r~~i~vwd~e~~~~----l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~d 1132 (1387)
T KOG1517|consen 1065 QPPKTLKFHPF-EPQIAAADD-------RERIRVWDWEKGRL----LNGFDNGAFPDTRVSDLELINEQDDALLLTASSD 1132 (1387)
T ss_pred CCCceeeecCC-CceeEEcCC-------cceEEEEecccCce----eccccCCCCCCCccceeeeecccchhheeeeccC
Confidence 35677889996 555566554 45999999987652 3322 2345788998764 345689999999
Q ss_pred CeEEEEEeCCC--CCCCCceeec-------cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeec-cccce
Q 021121 83 GSVKIYDTALP--PTANPIRSLH-------EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKE-HAYCV 152 (317)
Q Consensus 83 g~i~v~~~~~~--~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v 152 (317)
|.|+||+--.. +..+.+.... +..+.-.-+.|..... +|++++.-..|+|||....+....+.. ....+
T Consensus 1133 GvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~v 1211 (1387)
T KOG1517|consen 1133 GVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLV 1211 (1387)
T ss_pred ceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccceeEeecccCCCccc
Confidence 99999974432 1222222211 1122224467887766 666666688999999998877776653 44568
Q ss_pred EEEEEecCCCCeEEEEeCCCeEEEEeCCCCC---ceeeeccCccc--eEEEEecCCCCcEEEEEecCCcEEEEEccCC-C
Q 021121 153 YNATWNPRHSDVFCSASGDCTLRIWDVREMG---STMIIPAHEFE--ILACDWNKYDDCLIASASVDKSIKIWDVRNY-R 226 (317)
Q Consensus 153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~--v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~-~ 226 (317)
+++.-+-.+++++++|..||.|++||.|... .+...+.|... |..+.+.+..-..|++|+.+|.|++||+|.. .
T Consensus 1212 TaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~ 1291 (1387)
T KOG1517|consen 1212 TALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK 1291 (1387)
T ss_pred eeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc
Confidence 8888777778999999999999999998653 35566677776 9999998833346999999999999999983 3
Q ss_pred ccEEEEecC---CCceeEEEecCCCCeeEEeeecCCeEEEEeccccccee-----eeeecccceeEeEEEEeccCCeEEE
Q 021121 227 VPIAVLNGH---GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALV-----GRYDHHTEFAVGVDMSVLVEGLLAS 298 (317)
Q Consensus 227 ~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~s 298 (317)
........| ++..+++..++..+ ++|+|+. +.|+||++.....-. ..+....+.+.+++|+|. .-++++
T Consensus 1292 e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~-~~llAa 1368 (1387)
T KOG1517|consen 1292 ETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPH-RLLLAA 1368 (1387)
T ss_pred cccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecch-hHhhhh
Confidence 222233333 23589999999998 7999987 999999987644111 111122356799999997 678899
Q ss_pred eecCCcEEEEecCCCC
Q 021121 299 TGWDELVYVWQQGMDP 314 (317)
Q Consensus 299 ~~~dg~i~~w~~~~~~ 314 (317)
|..|..|.||......
T Consensus 1369 G~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1369 GSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ccCCceEEEeecCCcC
Confidence 9999999999876543
No 172
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=7.6e-23 Score=166.14 Aligned_cols=244 Identities=18% Similarity=0.226 Sum_probs=196.2
Q ss_pred eecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEE
Q 021121 56 AFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWT 135 (317)
Q Consensus 56 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd 135 (317)
..+|.+.|.++...|.| ..|++|+.||+|+||.+.++ .++.... ..+.|.|++|+|.+...++++.....+.+.+
T Consensus 396 yrGHtg~Vr~iSvdp~G-~wlasGsdDGtvriWEi~Tg---Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSG-EWLASGSDDGTVRIWEIATG---RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred EeccCCeEEEEEecCCc-ceeeecCCCCcEEEEEeecc---eEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 34799999999999988 59999999999999999987 7777665 3669999999998876565555555565555
Q ss_pred cCCCc-------------------------------------eeEEeeccccceEEEEEecCCCCeEEEEeCC---CeEE
Q 021121 136 VDRPT-------------------------------------SVRTFKEHAYCVYNATWNPRHSDVFCSASGD---CTLR 175 (317)
Q Consensus 136 ~~~~~-------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~ 175 (317)
..-|. -++..-.|...|..+.|+.. |.+|++...+ ..|.
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk-GDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK-GDYLATVMPDSGNKSVL 549 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC-CceEEEeccCCCcceEE
Confidence 42210 01122246778999999998 8888886553 4689
Q ss_pred EEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEee
Q 021121 176 IWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASC 255 (317)
Q Consensus 176 i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 255 (317)
|+++...+....+....+.+.++.|+| ...+|++++ ...|++||+.... .+..+......|..++.+|.|.+ |+.|
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaT-q~~vRiYdL~kqe-lvKkL~tg~kwiS~msihp~GDn-li~g 625 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVAT-QRSVRIYDLSKQE-LVKKLLTGSKWISSMSIHPNGDN-LILG 625 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecC-CCceEEEEe-ccceEEEehhHHH-HHHHHhcCCeeeeeeeecCCCCe-EEEe
Confidence 999987776667766778899999999 666777766 4679999998844 46666666779999999999997 7889
Q ss_pred ecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121 256 SYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ 310 (317)
Q Consensus 256 ~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~ 310 (317)
+.|+.+..+|+.-...+.+.+..|...+++++|++. -.++++|+.||.+.|+.-
T Consensus 626 s~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~r-yPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 626 SYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKR-YPLFASGSDDGTVIVFHG 679 (733)
T ss_pred cCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccc-cceeeeecCCCcEEEEee
Confidence 999999999999888888999999999999999987 669999999999999853
No 173
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=1.1e-22 Score=167.63 Aligned_cols=274 Identities=15% Similarity=0.206 Sum_probs=207.2
Q ss_pred cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEE
Q 021121 8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKI 87 (317)
Q Consensus 8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 87 (317)
..|+.++|-|++...+++++ .++.+||.+.+. .++++. +|++.|+|++|+.+| ..+++|+.|..|.+
T Consensus 13 hci~d~afkPDGsqL~lAAg---------~rlliyD~ndG~-llqtLK--gHKDtVycVAys~dG-krFASG~aDK~VI~ 79 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAAG---------SRLLVYDTSDGT-LLQPLK--GHKDTVYCVAYAKDG-KRFASGSADKSVII 79 (1081)
T ss_pred cchheeEECCCCceEEEecC---------CEEEEEeCCCcc-cccccc--cccceEEEEEEccCC-ceeccCCCceeEEE
Confidence 47899999998544444443 389999999876 344444 799999999999999 59999999999999
Q ss_pred EEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEE
Q 021121 88 YDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCS 167 (317)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 167 (317)
|.-+.. -+.. -.|...|.|+.|+|-.. .+++++-. ..-+|..+.... .+.+ ....+.+.+|..+ +++++.
T Consensus 80 W~~klE----G~Lk-YSH~D~IQCMsFNP~~h-~LasCsLs-dFglWS~~qK~V-~K~k-ss~R~~~CsWtnD-Gqylal 149 (1081)
T KOG1538|consen 80 WTSKLE----GILK-YSHNDAIQCMSFNPITH-QLASCSLS-DFGLWSPEQKSV-SKHK-SSSRIICCSWTND-GQYLAL 149 (1081)
T ss_pred eccccc----ceee-eccCCeeeEeecCchHH-Hhhhcchh-hccccChhhhhH-Hhhh-hheeEEEeeecCC-CcEEEE
Confidence 995432 1111 35999999999999876 78888753 567787664332 2222 3567899999998 999999
Q ss_pred EeCCCeEEEEeCCCCCceeeec---cCccceEEEEecCCCC----cEEEEEecCCcEEEEEccCCCccEEEEecCCCcee
Q 021121 168 ASGDCTLRIWDVREMGSTMIIP---AHEFEILACDWNKYDD----CLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVR 240 (317)
Q Consensus 168 ~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~i~~~~~~~----~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~ 240 (317)
|-.+|+|.+-+- ++++...+. +.+++|.+++|+|..+ ..+++.....++.+|.+.... +..-+.-+-...
T Consensus 150 G~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~--Igk~r~L~FdP~ 226 (1081)
T KOG1538|consen 150 GMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ--IGKDRALNFDPC 226 (1081)
T ss_pred eccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee--ecccccCCCCch
Confidence 999999998864 344444443 4678899999999533 467777888888888776422 332223333456
Q ss_pred EEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121 241 KVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG 311 (317)
Q Consensus 241 ~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~ 311 (317)
|+.+.|+|. ++..|+.|+.+++|-- .+- .+.+.......|..++..|+ ++.++.|..||+|..|++-
T Consensus 227 CisYf~NGE-y~LiGGsdk~L~~fTR-~Gv-rLGTvg~~D~WIWtV~~~PN-sQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 227 CISYFTNGE-YILLGGSDKQLSLFTR-DGV-RLGTVGEQDSWIWTVQAKPN-SQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred hheeccCCc-EEEEccCCCceEEEee-cCe-EEeeccccceeEEEEEEccC-CceEEEEEccCeeehhhhH
Confidence 899999999 6778888999999863 332 45666667789999999998 8999999999999998874
No 174
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.91 E-value=1.1e-20 Score=154.94 Aligned_cols=267 Identities=12% Similarity=0.168 Sum_probs=173.7
Q ss_pred CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEE-EcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEE
Q 021121 36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAA-VADGSVKIYDTALPPTANPIRSLHEHTREVHSADY 114 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (317)
++.|.+|++.... .+..+......+....++++|+++ +|+++ ..++.|.+|+++............ .......+++
T Consensus 11 ~~~I~~~~~~~~g-~l~~~~~~~~~~~~~~l~~spd~~-~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~ 87 (330)
T PRK11028 11 SQQIHVWNLNHEG-ALTLLQVVDVPGQVQPMVISPDKR-HLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHIST 87 (330)
T ss_pred CCCEEEEEECCCC-ceeeeeEEecCCCCccEEECCCCC-EEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEE
Confidence 8899999996432 344555555667788899999985 55544 557889999997321112222221 2335678999
Q ss_pred ecCCCCEEEEE-cCCCEEEEEEcCCCc----eeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCcee---
Q 021121 115 NPTRRDSFITS-SWDDTVKLWTVDRPT----SVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM--- 186 (317)
Q Consensus 115 ~~~~~~~l~~~-~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--- 186 (317)
+|+++ +++++ ..++.|.+|++++.. .+..+. +...+..++++|++..++++...++.|.+||+++...+.
T Consensus 88 ~~~g~-~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~ 165 (330)
T PRK11028 88 DHQGR-FLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE 165 (330)
T ss_pred CCCCC-EEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC
Confidence 99998 55554 458999999997432 222222 223467889999944444566677999999998643221
Q ss_pred ----eeccCccceEEEEecCCCCcEEEEEec-CCcEEEEEccCC--C-ccEEEEecC------CCceeEEEecCCCCeeE
Q 021121 187 ----IIPAHEFEILACDWNKYDDCLIASASV-DKSIKIWDVRNY--R-VPIAVLNGH------GYAVRKVKFSPHRRNLL 252 (317)
Q Consensus 187 ----~~~~~~~~v~~i~~~~~~~~~l~~~~~-d~~i~v~d~~~~--~-~~~~~~~~~------~~~v~~~~~~~~~~~~l 252 (317)
... .......++|+| ++++++++.+ ++.|.+||+... + ..+..+..+ ......+.++|+++. +
T Consensus 166 ~~~~~~~-~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~-l 242 (330)
T PRK11028 166 PAEVTTV-EGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH-L 242 (330)
T ss_pred CCceecC-CCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE-E
Confidence 111 233467899999 8888877765 899999999742 2 112222211 112346899999995 5
Q ss_pred Eee-ecCCeEEEEecccccce---eeeeecccceeEeEEEEeccCCeEEEee-cCCcEEEEecCC
Q 021121 253 ASC-SYDMTVCLWDFMVEDAL---VGRYDHHTEFAVGVDMSVLVEGLLASTG-WDELVYVWQQGM 312 (317)
Q Consensus 253 ~~~-~~d~~i~vwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~~w~~~~ 312 (317)
+++ ..++.|.+|++...... ...... ......+.++|+ +++|+++. .++.|.+|+++.
T Consensus 243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~d-g~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 243 YACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHS-GKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCC-CCEEEEEEccCCcEEEEEEcC
Confidence 555 45789999998654321 222221 124568899999 66666555 589999999864
No 175
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.1e-21 Score=139.30 Aligned_cols=277 Identities=14% Similarity=0.182 Sum_probs=196.0
Q ss_pred cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCC-------CCcceeeeeecCCCCeeEEEecCCCCCeEEEEE
Q 021121 8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPA-------APALTELVAFDTADGVYDLAWSESHDSLLIAAV 80 (317)
Q Consensus 8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 80 (317)
..|++-+|+| .++++++++. +|.|-++.++.- ..+...+....|.++|+.++|.. .+|++|+
T Consensus 11 ~tvf~qa~sp--~~~~l~agn~------~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g 79 (325)
T KOG0649|consen 11 NTVFAQAISP--SKQYLFAGNL------FGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG 79 (325)
T ss_pred HHHHHHhhCC--cceEEEEecC------CCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeecc
Confidence 3567778999 7888888886 899999998632 11233344457999999999993 3666665
Q ss_pred cCCeEEEEEeCCCCCC---CCceee--c-----cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecccc
Q 021121 81 ADGSVKIYDTALPPTA---NPIRSL--H-----EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAY 150 (317)
Q Consensus 81 ~dg~i~v~~~~~~~~~---~~~~~~--~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 150 (317)
||.|+=|......+. +++... . ..-..|+++...|..+ -++.++.|+.++-||+++|+..+.+++|++
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en-Si~~AgGD~~~y~~dlE~G~i~r~~rGHtD 157 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN-SILFAGGDGVIYQVDLEDGRIQREYRGHTD 157 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC-cEEEecCCeEEEEEEecCCEEEEEEcCCcc
Confidence 599999987654221 111111 1 1234688999998877 455555799999999999999999999999
Q ss_pred ceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCc----------cceEEEEecCCCCcEEEEEecCCcEEEE
Q 021121 151 CVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHE----------FEILACDWNKYDDCLIASASVDKSIKIW 220 (317)
Q Consensus 151 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------~~v~~i~~~~~~~~~l~~~~~d~~i~v~ 220 (317)
.+.++.--.. ...+++|++||++++||.++++.+..+...+ ..|.+++. +...+++|+ ...+.+|
T Consensus 158 YvH~vv~R~~-~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGg-Gp~lslw 232 (325)
T KOG0649|consen 158 YVHSVVGRNA-NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGG-GPKLSLW 232 (325)
T ss_pred eeeeeeeccc-CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCceEEecC-CCceeEE
Confidence 9999998554 4456699999999999999998887765322 23556664 445677665 5679999
Q ss_pred EccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEee
Q 021121 221 DVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTG 300 (317)
Q Consensus 221 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 300 (317)
.++..+. ...+. -..++..+.|..+ .+++++..+.+.-|.+..- +...........++..|+...-++|-.+|
T Consensus 233 hLrsse~-t~vfp-ipa~v~~v~F~~d---~vl~~G~g~~v~~~~l~Gv--l~a~ip~~s~~c~s~s~~~~p~k~~s~ag 305 (325)
T KOG0649|consen 233 HLRSSES-TCVFP-IPARVHLVDFVDD---CVLIGGEGNHVQSYTLNGV--LQANIPVESTACYSASWQTSPIKFISIAG 305 (325)
T ss_pred eccCCCc-eEEEe-cccceeEeeeecc---eEEEeccccceeeeeeccE--EEEeccCCccceeeecccCCceEEEEecc
Confidence 9998763 55544 4557888888754 4777777788998987532 32333333344666677655345677778
Q ss_pred cCCcEEEEe
Q 021121 301 WDELVYVWQ 309 (317)
Q Consensus 301 ~dg~i~~w~ 309 (317)
..+.+.++.
T Consensus 306 ~s~~~~i~~ 314 (325)
T KOG0649|consen 306 FSNKLHILK 314 (325)
T ss_pred cceeeeeee
Confidence 888887763
No 176
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.8e-22 Score=151.02 Aligned_cols=197 Identities=10% Similarity=0.172 Sum_probs=163.7
Q ss_pred eEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee
Q 021121 109 VHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII 188 (317)
Q Consensus 109 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 188 (317)
..|+.|++.|. +|++|+.||.|.|||+.+...-+.+.+|..+|.+++|+++ ++.|++++.|..|.+||+..+.++..+
T Consensus 26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~d-gr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRD-GRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcc-eeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCC-CCEeeeecCCceeEEEeccCCCceeEE
Confidence 78999999998 9999999999999999999988899999999999999999 899999999999999999999988888
Q ss_pred ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec---CCCceeEEEecCCCCeeEEeeecCCeEEEEe
Q 021121 189 PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG---HGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265 (317)
Q Consensus 189 ~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd 265 (317)
. ..++|..+.|+|.+.+..++.-.+..-.+-++..+...+..... -+..-.+..|.+.|+ ++++|..-|.+.++|
T Consensus 104 r-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~-yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 104 R-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK-YIITGTSKGKLLVYD 181 (405)
T ss_pred E-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC-EEEEecCcceEEEEe
Confidence 7 78899999999977777777766766677776653321111111 111223446888898 799999999999999
Q ss_pred cccccceeeeeeccc-ceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121 266 FMVEDALVGRYDHHT-EFAVGVDMSVLVEGLLASTGWDELVYVWQQG 311 (317)
Q Consensus 266 ~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~ 311 (317)
..+.+ ++..++-.. ..|..+.++.. +..|+.-+.|+.||.|++.
T Consensus 182 a~t~e-~vas~rits~~~IK~I~~s~~-g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 182 AETLE-CVASFRITSVQAIKQIIVSRK-GRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred cchhe-eeeeeeechheeeeEEEEecc-CcEEEEecCCceEEEEehh
Confidence 99986 556666555 78999999988 8899999999999999986
No 177
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.90 E-value=9e-23 Score=149.95 Aligned_cols=242 Identities=14% Similarity=0.212 Sum_probs=185.8
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeec-cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEc
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLH-EHTREVHSADYNPTRRDSFITSSWDDTVKLWTV 136 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~ 136 (317)
+|.+.|+++.|..++ +|.+|...|.|.+|++.+. .....+. .+...|+.+.--|++ .+.+-+.|+.+.+|++
T Consensus 12 p~~~~v~s~~fqa~~--rL~sg~~~G~V~~w~lqt~---r~~~~~r~~g~~~it~lq~~p~d--~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANE--RLMSGLSVGIVKMWVLQTE---RDLPLIRLFGRLFITNLQSIPND--SLDTQGRDPLLILWTI 84 (323)
T ss_pred cccchheehhhccch--hhhcccccceEEEEEeecC---ccchhhhhhccceeeceeecCCc--chhhcCCCceEEEEEc
Confidence 788899999999875 6999999999999999876 5555566 567889999988875 4889999999999998
Q ss_pred CCCceeE--------------Ee---------------------------------------eccccceEEEEEecCCC-
Q 021121 137 DRPTSVR--------------TF---------------------------------------KEHAYCVYNATWNPRHS- 162 (317)
Q Consensus 137 ~~~~~~~--------------~~---------------------------------------~~~~~~v~~~~~~~~~~- 162 (317)
..+..+. .+ ....+.+.+..+....+
T Consensus 85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s 164 (323)
T KOG0322|consen 85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS 164 (323)
T ss_pred cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence 6521110 00 01123455555433322
Q ss_pred -CeEEEEeCCCeEEEEeCCCCCce----------eeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCC--ccE
Q 021121 163 -DVFCSASGDCTLRIWDVREMGST----------MIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR--VPI 229 (317)
Q Consensus 163 -~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~ 229 (317)
-++++|.++|.+.+||+.++..+ .....|..++.++.+.+ .-..=++|+.+..+..|++.... .++
T Consensus 165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~Sl~~s~gslq~ 243 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMYSLNHSTGSLQI 243 (323)
T ss_pred eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccccceeeeeccccCcccc
Confidence 25678889999999999987333 33346888999999988 55555677778889999887542 111
Q ss_pred -EEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEE
Q 021121 230 -AVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 308 (317)
Q Consensus 230 -~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w 308 (317)
..+.-.+..|..+..-||++ ++|+++.|+.|+||..++.. ++..+..|.+.|++++|+|+ ..++|+++.|++|.+|
T Consensus 244 ~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl~-pLAVLkyHsagvn~vAfspd-~~lmAaaskD~rISLW 320 (323)
T KOG0322|consen 244 RKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTLN-PLAVLKYHSAGVNAVAFSPD-CELMAAASKDARISLW 320 (323)
T ss_pred cceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccCC-chhhhhhhhcceeEEEeCCC-CchhhhccCCceEEee
Confidence 12222344688999999999 89999999999999999987 56889999999999999998 7899999999999999
Q ss_pred ec
Q 021121 309 QQ 310 (317)
Q Consensus 309 ~~ 310 (317)
++
T Consensus 321 kL 322 (323)
T KOG0322|consen 321 KL 322 (323)
T ss_pred ec
Confidence 86
No 178
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.90 E-value=8.2e-22 Score=152.62 Aligned_cols=212 Identities=19% Similarity=0.273 Sum_probs=171.6
Q ss_pred CCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC-------ceeEEeeccccceEEEEEecCCCCeEEEEe
Q 021121 97 NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP-------TSVRTFKEHAYCVYNATWNPRHSDVFCSAS 169 (317)
Q Consensus 97 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 169 (317)
.....+.+|.++|..++|+|.+.+.+++|+.|.+|.||.+..+ +.+..+.+|...|.-++|+|...+.|++++
T Consensus 72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence 3444567999999999999998889999999999999998664 456778899999999999999899999999
Q ss_pred CCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCC-ceeEEEecCCC
Q 021121 170 GDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGY-AVRKVKFSPHR 248 (317)
Q Consensus 170 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~ 248 (317)
.|.+|.+||+.+++.+..+. |...|.++.|+. +|.++++.+.|..|+|||.++++. +..-.+|.+ .-..+.|-.++
T Consensus 152 ~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~-v~e~~~heG~k~~Raifl~~g 228 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITLD-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTV-VSEGVAHEGAKPARAIFLASG 228 (472)
T ss_pred CCceEEEEeccCCceeeecC-CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcE-eeecccccCCCcceeEEeccC
Confidence 99999999999999988887 999999999998 999999999999999999999774 555566654 34567788788
Q ss_pred CeeEEeee---cCCeEEEEeccccccee--eeeecccceeEeEEEEeccCCeEEEee-cCCcEEEEecCCCC
Q 021121 249 RNLLASCS---YDMTVCLWDFMVEDALV--GRYDHHTEFAVGVDMSVLVEGLLASTG-WDELVYVWQQGMDP 314 (317)
Q Consensus 249 ~~~l~~~~---~d~~i~vwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~~w~~~~~~ 314 (317)
. ++.+|- .+..+.+||..+.++.+ ..++. +..|.---+.++ .++++.+| .|+.||.|.+..++
T Consensus 229 ~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~d-t~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 229 K-IFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPD-TSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred c-eeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCC-CCEEEEEecCCcceEEEEecCCC
Confidence 7 555543 56789999988766443 23333 334554456777 55555544 79999999998765
No 179
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=4e-21 Score=150.04 Aligned_cols=197 Identities=18% Similarity=0.224 Sum_probs=158.8
Q ss_pred EEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec
Q 021121 110 HSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP 189 (317)
Q Consensus 110 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 189 (317)
.+++|+.+|. .+++++.||++++|+..+...+.....|...|.++.|+|+ ++.|++-+.| ..+||+.+++..+....
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~d-gk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPD-GKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCC-CcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 6799999988 9999999999999998888888788889999999999999 8999999999 89999999996665544
Q ss_pred c--CccceEEEEecCCCC-----cEEEEEecCCcEEEEEccCCCc----cEEEEecCCCceeEEEecCCCCeeEEeeecC
Q 021121 190 A--HEFEILACDWNKYDD-----CLIASASVDKSIKIWDVRNYRV----PIAVLNGHGYAVRKVKFSPHRRNLLASCSYD 258 (317)
Q Consensus 190 ~--~~~~v~~i~~~~~~~-----~~l~~~~~d~~i~v~d~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 258 (317)
. .+.....+.|+. ++ .+++.....+.|+.||+..... +..........|++++.+++|+ +++.|+.|
T Consensus 225 ~~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk-f~AlGT~d 302 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK-FLALGTMD 302 (398)
T ss_pred Ccccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc-EEEEeccC
Confidence 2 222356677776 54 2333333445677777654432 2222223345799999999999 89999999
Q ss_pred CeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121 259 MTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 259 ~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
|.|.|++..+-+......+.|...|+.+.|+|+ .+++++.+.|....+..+..
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pd-sr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPD-SRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCC-cCcccccccCCceeEEEEee
Confidence 999999999988777778899999999999999 88999999999999988865
No 180
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1e-22 Score=164.21 Aligned_cols=251 Identities=17% Similarity=0.217 Sum_probs=189.8
Q ss_pred eeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCC-----CCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCC
Q 021121 55 VAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALP-----PTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD 129 (317)
Q Consensus 55 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 129 (317)
....|...|+.++|+|.. ..|++++.||.+.+|++... ...+++.++.+|.++|.|++..+.+. .+++|+-||
T Consensus 289 tl~s~~d~ir~l~~~~se-p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~-~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSE-PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE-HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCC-CeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce-EEEeeccCc
Confidence 334678899999999986 59999999999999999331 23467788999999999999999988 999999999
Q ss_pred EEEEEEcCCC----------ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc--CccceEE
Q 021121 130 TVKLWTVDRP----------TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA--HEFEILA 197 (317)
Q Consensus 130 ~v~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~ 197 (317)
+|+.|++... .....+.+|.+.++.+++++. ...|++++.||+++.|+.....+ ..+.. ......+
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~-~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST-KDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeeccc-ccceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 9999966421 234467789999999999998 77889999999999999876655 33321 2233456
Q ss_pred EEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec-------CCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121 198 CDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG-------HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED 270 (317)
Q Consensus 198 i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~ 270 (317)
+.+-.......++...-+.-.++++..... +..+.. ....+..+.++|.+. +.+++..|+.|+++|..+++
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~-~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSD-LLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNKTGK 522 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhh-eeeccccCCCcccccCccceEEecCCCC-eeEecccCCceecccccccc
Confidence 666542223333333233333333333221 222211 123577889999997 89999999999999999887
Q ss_pred ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121 271 ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 271 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
++.....|...++++++.|+ +-+|++++.||.+++|++..+
T Consensus 523 -~l~s~~a~~~svtslai~~n-g~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 523 -ILHSMVAHKDSVTSLAIDPN-GPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred -cchheeeccceecceeecCC-CceEEeecCCceeehhhccch
Confidence 67788899999999999998 789999999999999998653
No 181
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.89 E-value=1.9e-21 Score=159.49 Aligned_cols=254 Identities=16% Similarity=0.269 Sum_probs=189.2
Q ss_pred CceEEEEecCCCCCcc-eeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCC----CCCceeeccCCcceE
Q 021121 36 NGRVHVLDLSPAAPAL-TELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPT----ANPIRSLHEHTREVH 110 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~----~~~~~~~~~~~~~v~ 110 (317)
.|.|-||+++..+... ..+..+.....|+++.|.|.++..|++++.||.|++|.+..+.. ..+...+..|...|+
T Consensus 602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~ 681 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT 681 (1012)
T ss_pred CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE
Confidence 6899999998765322 23333445678999999998888999999999999999987532 245566788999999
Q ss_pred EEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCcee-eec
Q 021121 111 SADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM-IIP 189 (317)
Q Consensus 111 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~ 189 (317)
++.|+|-..+.|++++.|-+|++||+.+++....+.+|.+.|..++|+|+ ++.+++.+.||+|++|+.++++... .-+
T Consensus 682 slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpd-Gr~~AtVcKDg~~rVy~Prs~e~pv~Eg~ 760 (1012)
T KOG1445|consen 682 SLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPD-GRRIATVCKDGTLRVYEPRSREQPVYEGK 760 (1012)
T ss_pred EEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCC-CcceeeeecCceEEEeCCCCCCCccccCC
Confidence 99999988789999999999999999999999999999999999999999 9999999999999999998775432 211
Q ss_pred cC-ccceEEEEecCCCCcEEEEEecCC----cEEEEEccCCC-ccEEEEecC-CCceeEEEecCCCCeeEEeeecCCeEE
Q 021121 190 AH-EFEILACDWNKYDDCLIASASVDK----SIKIWDVRNYR-VPIAVLNGH-GYAVRKVKFSPHRRNLLASCSYDMTVC 262 (317)
Q Consensus 190 ~~-~~~v~~i~~~~~~~~~l~~~~~d~----~i~v~d~~~~~-~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~ 262 (317)
+. ...--.|.|.- +++++++.+.|. .|.+||.++.. .++....-. .-.+.--.+.+|...++++|-.|..|.
T Consensus 761 gpvgtRgARi~wac-dgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~ 839 (1012)
T KOG1445|consen 761 GPVGTRGARILWAC-DGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVN 839 (1012)
T ss_pred CCccCcceeEEEEe-cCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEE
Confidence 11 11223466665 888888877664 58889887654 223322111 111112235567776889999999999
Q ss_pred EEecccccceeeeeeccccee--EeEEEEec
Q 021121 263 LWDFMVEDALVGRYDHHTEFA--VGVDMSVL 291 (317)
Q Consensus 263 vwd~~~~~~~~~~~~~~~~~v--~~~~~~~~ 291 (317)
+|++-..++.+..+..|..++ .+++|.+.
T Consensus 840 ~yEv~~esPy~lpl~~f~sp~~hqGl~fl~K 870 (1012)
T KOG1445|consen 840 MYEVIYESPYLLPLAPFMSPVGHQGLAFLQK 870 (1012)
T ss_pred EEEecCCCceeeecccccCCCcccceeeecc
Confidence 999987775555555544332 45666664
No 182
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.89 E-value=3.6e-19 Score=151.33 Aligned_cols=285 Identities=26% Similarity=0.439 Sum_probs=211.8
Q ss_pred ceeEEEE-ecCCCCe-EEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEc-CCeE
Q 021121 9 NGYSVKF-SPFYESR-LAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVA-DGSV 85 (317)
Q Consensus 9 ~v~~~~~-~p~~~~~-~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i 85 (317)
.+..+.+ +++ .. +++.... .++.+.+|+..... ........|...|..++|+|++. .++.++. ++.+
T Consensus 111 ~~~~~~~~~~~--~~~~~~~~~~-----~d~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~ 180 (466)
T COG2319 111 SVSKLALSSPD--GNSILLASSS-----LDGTVKLWDLSTPG--KLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTI 180 (466)
T ss_pred ceeeEEEECCC--cceEEeccCC-----CCccEEEEEecCCC--eEEEEEecCcccEEEEEECCCCC-EEEecCCCCCce
Confidence 4566666 563 33 4444332 28899999998721 22333447888999999999985 7777775 9999
Q ss_pred EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeE-EeeccccceEEEEEecCCCCe
Q 021121 86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVR-TFKEHAYCVYNATWNPRHSDV 164 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ 164 (317)
++|+.... ..+..+..|...|.+++|+|++...+++++.|+.|++||...+.... .+..|.... ...|+|+ +..
T Consensus 181 ~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~ 255 (466)
T COG2319 181 KLWDLRTG---KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPD-GSL 255 (466)
T ss_pred EEEEcCCC---ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCC-CCE
Confidence 99999864 67777778999999999999887345555999999999988777777 577777765 4489998 588
Q ss_pred EEEEeCCCeEEEEeCCCCCc-eeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEE-ecCCCceeEE
Q 021121 165 FCSASGDCTLRIWDVREMGS-TMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVL-NGHGYAVRKV 242 (317)
Q Consensus 165 l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~v~~~ 242 (317)
+++++.|+.+++|+.+.... ...+..|...+.++.|.| ++..+++++.|+.+.+||.+......... ..|...+..+
T Consensus 256 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (466)
T COG2319 256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSL 334 (466)
T ss_pred EEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEE
Confidence 88999999999999987765 444456788999999999 77788888889889999988766422222 3677789999
Q ss_pred EecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEE-eecCCcEEEEecCCC
Q 021121 243 KFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLAS-TGWDELVYVWQQGMD 313 (317)
Q Consensus 243 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~~~dg~i~~w~~~~~ 313 (317)
.|.+++..+...+..|+.+.+|+..... ........ ..+..+.+.+ . ..+.. +..++.+.+|+....
T Consensus 335 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~ 402 (466)
T COG2319 335 SFSPDGSLLVSGGSDDGTIRLWDLRTGK-PLKTLEGH-SNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTG 402 (466)
T ss_pred EECCCCCEEEEeecCCCcEEeeecCCCc-eeEEecCC-ceEEEEEECC-C-CCEEEEecCCCceEEEecccC
Confidence 9943324344444678999999988876 22222222 2288889988 6 55555 889999999998764
No 183
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.1e-20 Score=137.53 Aligned_cols=234 Identities=14% Similarity=0.170 Sum_probs=174.1
Q ss_pred CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCC-------CCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEE
Q 021121 62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALP-------PTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLW 134 (317)
Q Consensus 62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw 134 (317)
.|.+-+|+|.+ ++|++|..+|.|.+..++.- +...++...++|.++|+.++|.. . +|++|+ ||.|+-|
T Consensus 12 tvf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~-~Lls~g-dG~V~gw 86 (325)
T KOG0649|consen 12 TVFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--D-FLLSGG-DGLVYGW 86 (325)
T ss_pred HHHHHhhCCcc-eEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--h-heeecc-CceEEEe
Confidence 46677899987 69999999999999998653 12234455689999999999993 2 677777 5999999
Q ss_pred EcCCCce------eEEe--ecc-----ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEec
Q 021121 135 TVDRPTS------VRTF--KEH-----AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWN 201 (317)
Q Consensus 135 d~~~~~~------~~~~--~~~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~ 201 (317)
..++... +... ..+ -..|+++...|..+. ++.++.|+.++-||+++++..+.+++|...+.++.--
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R 165 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGR 165 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeec
Confidence 8765322 1111 111 235899999999444 4456689999999999999999999999999999885
Q ss_pred CCCCcEEEEEecCCcEEEEEccCCCccEEEEec---------C-CCceeEEEecCCCCeeEEeeecCCeEEEEecccccc
Q 021121 202 KYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG---------H-GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDA 271 (317)
Q Consensus 202 ~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---------~-~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~ 271 (317)
. ....+++|++||++|+||.++.+. +..+.. | ...|.+++-+. . +|++|+ ...+.+|.+++.+.
T Consensus 166 ~-~~~qilsG~EDGtvRvWd~kt~k~-v~~ie~yk~~~~lRp~~g~wigala~~e--d-WlvCGg-Gp~lslwhLrsse~ 239 (325)
T KOG0649|consen 166 N-ANGQILSGAEDGTVRVWDTKTQKH-VSMIEPYKNPNLLRPDWGKWIGALAVNE--D-WLVCGG-GPKLSLWHLRSSES 239 (325)
T ss_pred c-cCcceeecCCCccEEEEeccccce-eEEeccccChhhcCcccCceeEEEeccC--c-eEEecC-CCceeEEeccCCCc
Confidence 5 566789999999999999999774 444332 2 23566666544 3 677765 56799999998873
Q ss_pred eeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121 272 LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 272 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
...+ .-..++..+.|. ++.++++|..+.+.-|.++.
T Consensus 240 -t~vf-pipa~v~~v~F~---~d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 240 -TCVF-PIPARVHLVDFV---DDCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred -eEEE-ecccceeEeeee---cceEEEeccccceeeeeecc
Confidence 3333 335667888887 45788888888888888764
No 184
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.89 E-value=7.9e-21 Score=143.47 Aligned_cols=243 Identities=19% Similarity=0.262 Sum_probs=191.4
Q ss_pred CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC
Q 021121 59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR 138 (317)
Q Consensus 59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 138 (317)
..++|+|.+|++|. ..+|++.....|.||.....+..+...++..|...|++++|+|..+ .|++++.|..-++|....
T Consensus 9 ~~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn-rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCC-ceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC-ceeEccCCCCccccccCC
Confidence 45689999999997 6999999999999999987756888999999999999999999987 899999999999999843
Q ss_pred C---ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCce----eeeccCccceEEEEecCCCCcEEEEE
Q 021121 139 P---TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST----MIIPAHEFEILACDWNKYDDCLIASA 211 (317)
Q Consensus 139 ~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~v~~i~~~~~~~~~l~~~ 211 (317)
+ ++...+..++...+++.|+|. .+.|++|+....|.+|-++....- ..-+.+.+.|.+++|+| ++-++++|
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~-enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPK-ENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCc-CceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-Ccceeccc
Confidence 3 344556668889999999999 899999999999999988764322 23345678899999999 99999999
Q ss_pred ecCCcEEEEEccCC-------------C----ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceee
Q 021121 212 SVDKSIKIWDVRNY-------------R----VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVG 274 (317)
Q Consensus 212 ~~d~~i~v~d~~~~-------------~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 274 (317)
+.|+..+||..--. + +.+.......+.+..+.|+|+|. .|+-.+.|..+.+-|.....+.+.
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds~v~~~da~~p~~~v~ 243 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDSTVSFVDAAGPSERVQ 243 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCCceEEeecCCCchhcc
Confidence 99999999975210 0 11222334567899999999999 588889999999999877654444
Q ss_pred eeecccceeEeEEEEeccCCeEEEeecCCcEEEE
Q 021121 275 RYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 308 (317)
Q Consensus 275 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w 308 (317)
......-+..++.|-. +..++.++.|..=.++
T Consensus 244 ~~~~~~lP~ls~~~is--e~~vv~ag~~c~P~lf 275 (361)
T KOG1523|consen 244 SVATAQLPLLSVSWIS--ENSVVAAGYDCGPVLF 275 (361)
T ss_pred chhhccCCceeeEeec--CCceeecCCCCCceEE
Confidence 4444446777888865 3456666666433333
No 185
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=8.8e-20 Score=154.61 Aligned_cols=287 Identities=13% Similarity=0.164 Sum_probs=203.3
Q ss_pred eeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcc-eeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEE
Q 021121 10 GYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPAL-TELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIY 88 (317)
Q Consensus 10 v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~ 88 (317)
..++.+++ .+.+....- +-.+.+|+........ ..-....|.-.+++.+++|.+ +++|+|..||.|.+|
T Consensus 163 ~~~I~~~~--~ge~~~i~~-------~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw 232 (792)
T KOG1963|consen 163 PKSIVDNN--SGEFKGIVH-------MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNE-RYLAAGDSDGRILVW 232 (792)
T ss_pred CccEEEcC--CceEEEEEE-------eeeEEEEEecccceeeccchhhhhhcccceeEEecccc-ceEEEeccCCcEEEE
Confidence 34677777 555555444 4588899887643111 111122466668999999998 699999999999999
Q ss_pred EeCC-CCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEE
Q 021121 89 DTAL-PPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCS 167 (317)
Q Consensus 89 ~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 167 (317)
.--. .........++-|..+|.++.|+++|. +|++|+..|.+.+|.+++++ .+-+..-.++|..+.++|+ +.+.+.
T Consensus 233 ~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~-~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~d-s~~~sl 309 (792)
T KOG1963|consen 233 RDFGSSDDSETCTLLHWHHDEVNSLSFSSDGA-YLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPD-SDLYSL 309 (792)
T ss_pred eccccccccccceEEEecccccceeEEecCCc-eEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCC-CCeEEE
Confidence 7443 234455667788999999999999999 99999999999999999988 4556667889999999999 888888
Q ss_pred EeCCCeEEEEeCCCCCceeeeccC-----------ccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCcc--------
Q 021121 168 ASGDCTLRIWDVREMGSTMIIPAH-----------EFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVP-------- 228 (317)
Q Consensus 168 ~~~dg~i~i~d~~~~~~~~~~~~~-----------~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-------- 228 (317)
...|..|.+....+.+....+.+. ..-.+.++++| ..+.++-.+..|.|.+||+.+.+..
T Consensus 310 ~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~ 388 (792)
T KOG1963|consen 310 VLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDE 388 (792)
T ss_pred EecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEee
Confidence 889999999987665544433321 22345677777 5566666667777777776532210
Q ss_pred -----------------------------------------------------------EEEEecCCCceeEEEecCC-C
Q 021121 229 -----------------------------------------------------------IAVLNGHGYAVRKVKFSPH-R 248 (317)
Q Consensus 229 -----------------------------------------------------------~~~~~~~~~~v~~~~~~~~-~ 248 (317)
.....+|...+...++.+. .
T Consensus 389 n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~r 468 (792)
T KOG1963|consen 389 NYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTR 468 (792)
T ss_pred cccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcc
Confidence 0011245544444444433 3
Q ss_pred CeeEEeeecCCeEEEEeccccc---------ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121 249 RNLLASCSYDMTVCLWDFMVED---------ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 249 ~~~l~~~~~d~~i~vwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
...+++++.||.+++|-+...+ .+...-..|..+++.++|+.| | .+++.+.|+.|.+||..+
T Consensus 469 s~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d-G-slla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 469 SVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQD-G-SLLAVSFDDTITIWDYDT 539 (792)
T ss_pred cceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCC-C-cEEEEecCCEEEEecCCC
Confidence 3268899999999999984433 122222247889999999997 4 677777899999999987
No 186
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.89 E-value=4.8e-21 Score=154.05 Aligned_cols=207 Identities=20% Similarity=0.302 Sum_probs=165.6
Q ss_pred CeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceE
Q 021121 74 SLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVY 153 (317)
Q Consensus 74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 153 (317)
..++.++.||.+.+.+- ..+.......|.+.+.+-.|+|+|. -|++++.||.|++|.- +|-...++.....+|.
T Consensus 76 d~~~i~s~DGkf~il~k----~~rVE~sv~AH~~A~~~gRW~~dGt-gLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~ 149 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK----SARVERSISAHAAAISSGRWSPDGA-GLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIR 149 (737)
T ss_pred ceEEEEcCCceEEEecc----cchhhhhhhhhhhhhhhcccCCCCc-eeeeecCCceEEEEec-cchHHHHHhhcCceeE
Confidence 47888899999999873 3366677889999999999999998 8999999999999984 4544445555678899
Q ss_pred EEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe
Q 021121 154 NATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN 233 (317)
Q Consensus 154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 233 (317)
|++|.|+..+.+++.+ +.+.+=-+.....+...+.|++-|.++.|++ ..+++++|++|-..++||.... ++..-.
T Consensus 150 c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~--~Lf~S~ 224 (737)
T KOG1524|consen 150 CARWAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQGA--NLFTSA 224 (737)
T ss_pred EEEECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccCc--ccccCC
Confidence 9999999666666544 5666666666667778889999999999999 8999999999999999997653 466777
Q ss_pred cCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEE
Q 021121 234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYV 307 (317)
Q Consensus 234 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~ 307 (317)
.|..+|++++|.|+ + +++.++. ++.++ -....+.|..++||+| +..++.|...|.+.+
T Consensus 225 ~~ey~ITSva~npd-~-~~~v~S~-nt~R~------------~~p~~GSifnlsWS~D-GTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 225 AEEYAITSVAFNPE-K-DYLLWSY-NTARF------------SSPRVGSIFNLSWSAD-GTQATCGTSTGQLIV 282 (737)
T ss_pred hhccceeeeeeccc-c-ceeeeee-eeeee------------cCCCccceEEEEEcCC-CceeeccccCceEEE
Confidence 89999999999999 4 5666653 34441 1223567999999999 788888888887754
No 187
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=6.5e-21 Score=147.92 Aligned_cols=255 Identities=14% Similarity=0.157 Sum_probs=196.5
Q ss_pred eecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCC---CCCCCceeec-cCCcceEEEEEecCCCCEEEEEcCCCEE
Q 021121 56 AFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALP---PTANPIRSLH-EHTREVHSADYNPTRRDSFITSSWDDTV 131 (317)
Q Consensus 56 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~---~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v 131 (317)
..+|.+.|+++.|+.++ .+|++|+.|..+++|+++.. +..+++.... .|.+.|.|++|...+. .+++|..+++|
T Consensus 52 ~~~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~-~~~SG~~~~~V 129 (609)
T KOG4227|consen 52 VREHTGCINALQFSHND-RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR-FLYSGERWGTV 129 (609)
T ss_pred hhhhccccceeeeccCC-eEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe-eEecCCCccee
Confidence 34789999999999997 69999999999999998642 2234554433 4668999999998776 99999999999
Q ss_pred EEEEcCCCceeEEeec--cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCC-ce--eeeccCccceEEEEecCCCCc
Q 021121 132 KLWTVDRPTSVRTFKE--HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMG-ST--MIIPAHEFEILACDWNKYDDC 206 (317)
Q Consensus 132 ~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~--~~~~~~~~~v~~i~~~~~~~~ 206 (317)
...|+++.+.+..+.. ..+.|+.+..+|. .+.|++.+.++.|.+||.+... +. ...........++.|+|....
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence 9999999988877753 2358999999999 8999999999999999998764 22 222334556789999998899
Q ss_pred EEEEEecCCcEEEEEccCCCccEEEEec---C---CCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeeccc
Q 021121 207 LIASASVDKSIKIWDVRNYRVPIAVLNG---H---GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHT 280 (317)
Q Consensus 207 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 280 (317)
+|++.+..+-+.+||.+....++....+ - ...-.++.|+|.|.. |.+--....-.+||+-+....+.......
T Consensus 209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q-~msiRR~~~P~~~D~~S~R~~V~k~D~N~ 287 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQ-FMSIRRGKCPLYFDFISQRCFVLKSDHNP 287 (609)
T ss_pred eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCe-ehhhhccCCCEEeeeecccceeEeccCCC
Confidence 9999999999999999987665543221 1 122357889999996 55555555567789888765555544222
Q ss_pred ------ceeEeEEEEeccCCeEEEeecCCcEEEEecCCCCCC
Q 021121 281 ------EFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPRA 316 (317)
Q Consensus 281 ------~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~ 316 (317)
..+.+++|..+ ..+++|+.+=.|++|.+...+.+
T Consensus 288 ~GY~N~~T~KS~~F~~D--~~v~tGSD~~~i~~WklP~~~ds 327 (609)
T KOG4227|consen 288 NGYCNIKTIKSMTFIDD--YTVATGSDHWGIHIWKLPRANDS 327 (609)
T ss_pred Ccceeeeeeeeeeeecc--eeeeccCcccceEEEecCCCccc
Confidence 25677888764 56999999999999999876653
No 188
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.89 E-value=1.7e-20 Score=141.68 Aligned_cols=231 Identities=12% Similarity=0.120 Sum_probs=176.9
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
...+|+|.+|+++ ...++++.. +..|.||.......-...-....|...|+.+.|+|.. +.|++++.|..-
T Consensus 9 ~~~pitchAwn~d-rt~iAv~~~-------~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drna 79 (361)
T KOG1523|consen 9 LLEPITCHAWNSD-RTQIAVSPN-------NHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNA 79 (361)
T ss_pred ccCceeeeeecCC-CceEEeccC-------CceEEEEEecCCCCceeceehhhhCcceeEEeecCCC-CceeEccCCCCc
Confidence 3578999999995 444555444 6799999988766322222333789999999999997 589999999999
Q ss_pred EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeE----EeeccccceEEEEEecCC
Q 021121 86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVR----TFKEHAYCVYNATWNPRH 161 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~ 161 (317)
++|....+...++...+..+...++++.|+|..+ .|++|+....|.||-++....-. .-+.+.+.|+++.|+|+
T Consensus 80 yVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn- 157 (361)
T KOG1523|consen 80 YVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN- 157 (361)
T ss_pred cccccCCCCeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC-
Confidence 9999976677888888888999999999999987 99999999999999887543221 22346778999999998
Q ss_pred CCeEEEEeCCCeEEEEeCC-----CC-------------CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEcc
Q 021121 162 SDVFCSASGDCTLRIWDVR-----EM-------------GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR 223 (317)
Q Consensus 162 ~~~l~~~~~dg~i~i~d~~-----~~-------------~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~ 223 (317)
+-++++|+.|+..++|..- .. +....+....+.+..+.|+| +++.|+-.+.|..+.+-|..
T Consensus 158 nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~-sG~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 158 NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP-SGNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC-CCCEeeEecCCCceEEeecC
Confidence 8899999999999999642 11 11222224456799999999 99999999999999999988
Q ss_pred CCCccEEEEecCCCceeEEEecCCC
Q 021121 224 NYRVPIAVLNGHGYAVRKVKFSPHR 248 (317)
Q Consensus 224 ~~~~~~~~~~~~~~~v~~~~~~~~~ 248 (317)
...+.+.......-+..++.|-.+.
T Consensus 237 ~p~~~v~~~~~~~lP~ls~~~ise~ 261 (361)
T KOG1523|consen 237 GPSERVQSVATAQLPLLSVSWISEN 261 (361)
T ss_pred CCchhccchhhccCCceeeEeecCC
Confidence 7764444443333566777775543
No 189
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.8e-21 Score=147.02 Aligned_cols=193 Identities=20% Similarity=0.233 Sum_probs=158.5
Q ss_pred EEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecC-CCCeEEEEeCCCeEEEEeCCCCCceee--eccCc-cceE
Q 021121 121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR-HSDVFCSASGDCTLRIWDVREMGSTMI--IPAHE-FEIL 196 (317)
Q Consensus 121 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~-~~v~ 196 (317)
.++++...|.|++||..+++.+..+++++..++.+.|... .++.+.+|+.||+|++||+|....... ...+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 6888888999999999999999999999999999999874 578899999999999999998754433 33343 4677
Q ss_pred EEEecCCCCcEEEEEec----CCcEEEEEccCCCccEE-EEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc-
Q 021121 197 ACDWNKYDDCLIASASV----DKSIKIWDVRNYRVPIA-VLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED- 270 (317)
Q Consensus 197 ~i~~~~~~~~~l~~~~~----d~~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~- 270 (317)
+++..- .++++++|++ +-.+.+||.|+.++++. ....|...|++++|+|..+++|++|+.||.|.+||+....
T Consensus 122 ~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 122 CLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred EeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 787765 7778888763 55799999999887444 4567999999999999999999999999999999987653
Q ss_pred -ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121 271 -ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP 314 (317)
Q Consensus 271 -~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~ 314 (317)
..+.....|...|..+.|...+-+.|.+-+..+...+|+++...
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 22334446777899999998744578888999999999998653
No 190
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.88 E-value=1.2e-19 Score=139.60 Aligned_cols=236 Identities=16% Similarity=0.205 Sum_probs=177.9
Q ss_pred CCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCC--CEEEEEEcCC
Q 021121 61 DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD--DTVKLWTVDR 138 (317)
Q Consensus 61 ~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~v~iwd~~~ 138 (317)
..+..+.|+.+. ..|..|+.|| .++|+.+.. ............|..+-|+.. +++..+.+ ..+++++++.
T Consensus 6 ~ti~~~~~Nqd~-~~lsvGs~~G-yk~~~~~~~---~k~~~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk 77 (391)
T KOG2110|consen 6 PTINFIGFNQDS-TLLSVGSKDG-YKIFSCSPF---EKCFSKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKK 77 (391)
T ss_pred cceeeeeeccce-eEEEccCCCc-eeEEecCch---HHhhcccCCCeEEEEeecccc---eeEEEecCCCceEEEEEccc
Confidence 456777798886 6888999988 788887643 222222233456777778743 55544433 4599999998
Q ss_pred CceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc---CccceEEEEecCCCCcEEEEEe--c
Q 021121 139 PTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA---HEFEILACDWNKYDDCLIASAS--V 213 (317)
Q Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~i~~~~~~~~~l~~~~--~ 213 (317)
+..+..+. ...+|.++.++. +.|+++-.+. |+|||+++++.+.++.. +...+.++..++ .+.+++.-+ .
T Consensus 78 ~~~ICe~~-fpt~IL~VrmNr---~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t 151 (391)
T KOG2110|consen 78 KTTICEIF-FPTSILAVRMNR---KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTT 151 (391)
T ss_pred CceEEEEe-cCCceEEEEEcc---ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCC-CCceEEecCCCC
Confidence 88888776 567799999984 4566665554 99999999999887753 344455555555 555776532 4
Q ss_pred CCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCe-EEEEecccccceeeeeecc-cceeEeEEEEec
Q 021121 214 DKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMT-VCLWDFMVEDALVGRYDHH-TEFAVGVDMSVL 291 (317)
Q Consensus 214 d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~ 291 (317)
.|.|.+||..+.+ ++..+..|.+++.+++|+++|. +||+++..|+ |||+.+.+++.+...-++- ...|.+++|+|+
T Consensus 152 ~GdV~l~d~~nl~-~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 152 SGDVVLFDTINLQ-PVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD 229 (391)
T ss_pred CceEEEEEcccce-eeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence 5889999999866 5888999999999999999999 8999999887 8999999988544333332 346899999999
Q ss_pred cCCeEEEeecCCcEEEEecCCC
Q 021121 292 VEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 292 ~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
+.+|++.|..++|++|+++..
T Consensus 230 -s~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 230 -SQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred -CCeEEEecCCCeEEEEEeccc
Confidence 889999999999999999764
No 191
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.88 E-value=4e-20 Score=138.13 Aligned_cols=298 Identities=19% Similarity=0.248 Sum_probs=209.3
Q ss_pred ceeEEEEecCCCCeEEEEEeccccc-----ccCceEEEEecCCCCC-cceeeeeecCCCCeeEEEecC---CCCCeEEEE
Q 021121 9 NGYSVKFSPFYESRLAVATAQNFGI-----LGNGRVHVLDLSPAAP-ALTELVAFDTADGVYDLAWSE---SHDSLLIAA 79 (317)
Q Consensus 9 ~v~~~~~~p~~~~~~~~~~~~~~~~-----~~~g~i~i~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~ 79 (317)
++.+++-.+ +.+++++...-.. ...|++.+|++...+. .+..++..+ ...+..|.|.. ++...++-+
T Consensus 16 ~~C~l~~~~---~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~d-ts~~~dm~w~~~~~~g~~~l~~a 91 (339)
T KOG0280|consen 16 PICCLCHTR---NVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTD-TSTEFDMLWRIRETDGDFNLLDA 91 (339)
T ss_pred Ccccccccc---ceEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeec-ccccceeeeeeccCCccceeeec
Confidence 344444444 4666666543111 2578999999987652 123334333 34678888873 343467778
Q ss_pred EcCCeEEEEEeCCCCCCCCceeeccCCc---ceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce--eEEeeccccceEE
Q 021121 80 VADGSVKIYDTALPPTANPIRSLHEHTR---EVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS--VRTFKEHAYCVYN 154 (317)
Q Consensus 80 ~~dg~i~v~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~ 154 (317)
...|.|.++..........+..+..-.- ...++.|++.+. .++++..+|.+.+-+...... .+.++.|..+.+.
T Consensus 92 ~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~-~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wt 170 (339)
T KOG0280|consen 92 HARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGT-KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWT 170 (339)
T ss_pred cccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCc-eEEEEcCCCcEEEEecceeeeeecccccccceeeee
Confidence 8899999999775432222222222221 345788998887 788888899999766655543 3478899999999
Q ss_pred EEEecCCCCeEEEEeCCCeEEEEeCCCC-Cceee-eccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEE
Q 021121 155 ATWNPRHSDVFCSASGDCTLRIWDVREM-GSTMI-IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVL 232 (317)
Q Consensus 155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~-~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 232 (317)
..|+..+++++.+|++|+.+..||+|.. +.+.. .+.|...|.+|.-+|..+.++++|+.|..|++||.|+..+|+..-
T Consensus 171 a~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~ 250 (339)
T KOG0280|consen 171 AKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA 250 (339)
T ss_pred eecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC
Confidence 9999998999999999999999999943 33332 456888999999999889999999999999999999877766554
Q ss_pred ecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc-c---eeeeeecccceeEeEEEEeccCCeEEEee-cCCcEE-
Q 021121 233 NGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED-A---LVGRYDHHTEFAVGVDMSVLVEGLLASTG-WDELVY- 306 (317)
Q Consensus 233 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~-~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~- 306 (317)
. -.+.|+.+.++|.-...+..+..-+-.+|-+..... + .......|.+-.++-.|... ...|+|++ .|+.++
T Consensus 251 ~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~-~~~lATCsFYDk~~~~ 328 (339)
T KOG0280|consen 251 K-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK-DSFLATCSFYDKKIRQ 328 (339)
T ss_pred c-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccc-cceeeeeeccccceee
Confidence 3 347899999999654434444444447888776654 1 34556678888888888654 56888876 688756
Q ss_pred EEecCCC
Q 021121 307 VWQQGMD 313 (317)
Q Consensus 307 ~w~~~~~ 313 (317)
+|-.-++
T Consensus 329 ~Wl~~t~ 335 (339)
T KOG0280|consen 329 LWLHITG 335 (339)
T ss_pred eeeeccC
Confidence 8865443
No 192
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.88 E-value=4.6e-19 Score=145.46 Aligned_cols=252 Identities=12% Similarity=0.146 Sum_probs=160.9
Q ss_pred ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121 5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGS 84 (317)
Q Consensus 5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 84 (317)
+....+..++++| +++++.++.. .++.|.+|+++... .+..............++|+|+++.++++...++.
T Consensus 32 ~~~~~~~~l~~sp--d~~~lyv~~~-----~~~~i~~~~~~~~g-~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~ 103 (330)
T PRK11028 32 DVPGQVQPMVISP--DKRHLYVGVR-----PEFRVLSYRIADDG-ALTFAAESPLPGSPTHISTDHQGRFLFSASYNANC 103 (330)
T ss_pred ecCCCCccEEECC--CCCEEEEEEC-----CCCcEEEEEECCCC-ceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCe
Confidence 3445677899999 4555444332 17899999997432 23333333344467789999998544444445899
Q ss_pred EEEEEeCCCCCC-CCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEE-----ee-ccccceEEEEE
Q 021121 85 VKIYDTALPPTA-NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRT-----FK-EHAYCVYNATW 157 (317)
Q Consensus 85 i~v~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~-----~~-~~~~~v~~~~~ 157 (317)
|.+|+++..... .....+. +.....+++++|+++.++++...++.|.+||+++...+.. .. .....+..++|
T Consensus 104 v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~ 182 (330)
T PRK11028 104 VSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVF 182 (330)
T ss_pred EEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEE
Confidence 999999743211 2222222 2345677889999984556667789999999986432211 11 12344678999
Q ss_pred ecCCCCeEEEEeC-CCeEEEEeCCCC--C--ceeeeccC------ccceEEEEecCCCCcEEEEEec-CCcEEEEEccCC
Q 021121 158 NPRHSDVFCSASG-DCTLRIWDVREM--G--STMIIPAH------EFEILACDWNKYDDCLIASASV-DKSIKIWDVRNY 225 (317)
Q Consensus 158 ~~~~~~~l~~~~~-dg~i~i~d~~~~--~--~~~~~~~~------~~~v~~i~~~~~~~~~l~~~~~-d~~i~v~d~~~~ 225 (317)
+|+ +++++++.. ++.|.+||++.. + ....+... ......+.++| ++++++++.. ++.|.+|++...
T Consensus 183 ~pd-g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 183 HPN-QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred CCC-CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEecCCCCeEEEEEEeCC
Confidence 999 677766655 899999999742 2 22222211 11234688999 8888888754 689999999654
Q ss_pred CccEE---EEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121 226 RVPIA---VLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV 268 (317)
Q Consensus 226 ~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~ 268 (317)
..... .... ......+.++|++++++++...+++|.+|++..
T Consensus 261 ~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 261 GSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 32121 1111 234568999999996555555689999998753
No 193
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=2.2e-21 Score=156.57 Aligned_cols=259 Identities=18% Similarity=0.190 Sum_probs=187.1
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCC----Ccceeee-eecCCCCeeEEEecCCCCCeEEEEE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAA----PALTELV-AFDTADGVYDLAWSESHDSLLIAAV 80 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~----~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~ 80 (317)
|.+.+++++|+|. ...++.+.. +|.|.+|+++... ..+.++. ...|.++|.|++..+++ ..+++|+
T Consensus 293 ~~d~ir~l~~~~s-ep~lit~se-------d~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~-~~~ysgg 363 (577)
T KOG0642|consen 293 HDDCIRALAFHPS-EPVLITASE-------DGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNG-EHCYSGG 363 (577)
T ss_pred chhhhhhhhcCCC-CCeEEEecc-------ccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCc-eEEEeec
Confidence 5677889999995 344444443 8999999994321 2233343 34799999999999998 5999999
Q ss_pred cCCeEEEEEeCCCCC-------CCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeec--cccc
Q 021121 81 ADGSVKIYDTALPPT-------ANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKE--HAYC 151 (317)
Q Consensus 81 ~dg~i~v~~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~ 151 (317)
.||+|+.|++..... ......+.+|.+.|+.+++++... .|++++.||+++.|+...... ..+.. ..+.
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY 441 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc-ceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence 999999997763211 123446779999999999998876 799999999999999876655 33332 2234
Q ss_pred eEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc-------CccceEEEEecCCCCcEEEEEecCCcEEEEEccC
Q 021121 152 VYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA-------HEFEILACDWNKYDDCLIASASVDKSIKIWDVRN 224 (317)
Q Consensus 152 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~ 224 (317)
..++.+-.....+.++...-+.--++++........+.. ....+.-+.++| ...+.+++.+|+.|+++|..+
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccc
Confidence 566666554334444444444444444444433333321 123467888999 889999999999999999998
Q ss_pred CCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecc
Q 021121 225 YRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH 279 (317)
Q Consensus 225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 279 (317)
+. ++.....|...++++++.|+|. +|++++.|+.+++|.+.... ++.....|
T Consensus 521 ~~-~l~s~~a~~~svtslai~~ng~-~l~s~s~d~sv~l~kld~k~-~~~es~~~ 572 (577)
T KOG0642|consen 521 GK-ILHSMVAHKDSVTSLAIDPNGP-YLMSGSHDGSVRLWKLDVKT-CVLESTAH 572 (577)
T ss_pred cc-cchheeeccceecceeecCCCc-eEEeecCCceeehhhccchh-eeeccccc
Confidence 76 4778888999999999999999 69999999999999987654 33343334
No 194
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.87 E-value=4.6e-21 Score=141.02 Aligned_cols=244 Identities=19% Similarity=0.219 Sum_probs=178.6
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
+...++++.|-. ++++..+.. .|-|.+|+++...... .....+...|+.+.--|++ .+.+-+.|+.+
T Consensus 13 ~~~~v~s~~fqa--~~rL~sg~~-------~G~V~~w~lqt~r~~~--~~r~~g~~~it~lq~~p~d--~l~tqgRd~~L 79 (323)
T KOG0322|consen 13 HSSSVTSVLFQA--NERLMSGLS-------VGIVKMWVLQTERDLP--LIRLFGRLFITNLQSIPND--SLDTQGRDPLL 79 (323)
T ss_pred ccchheehhhcc--chhhhcccc-------cceEEEEEeecCccch--hhhhhccceeeceeecCCc--chhhcCCCceE
Confidence 556778888887 566555554 8999999999876321 2222466788999888874 67888899999
Q ss_pred EEEEeCCC---------------------CCCCCc---eee--------------------------ccCCcceEEEEEe
Q 021121 86 KIYDTALP---------------------PTANPI---RSL--------------------------HEHTREVHSADYN 115 (317)
Q Consensus 86 ~v~~~~~~---------------------~~~~~~---~~~--------------------------~~~~~~v~~~~~~ 115 (317)
.+|++... .+.+.. ..+ ....+.+.|..+.
T Consensus 80 ~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 80 ILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred EEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 99988652 000000 000 0112345555542
Q ss_pred cC-C-CCEEEEEcCCCEEEEEEcCCCcee----------EEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCC
Q 021121 116 PT-R-RDSFITSSWDDTVKLWTVDRPTSV----------RTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMG 183 (317)
Q Consensus 116 ~~-~-~~~l~~~~~dg~v~iwd~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 183 (317)
.+ + ..++++|-.+|.+.+||+.++..+ .....|..+|.++.+.+. .+.=++|+.+..+..|+++...
T Consensus 160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~-~~rGisgga~dkl~~~Sl~~s~ 238 (323)
T KOG0322|consen 160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS-CDRGISGGADDKLVMYSLNHST 238 (323)
T ss_pred ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh-hcCCcCCCccccceeeeecccc
Confidence 22 2 226778889999999999987333 334468899999999987 5556688888889999887542
Q ss_pred c----eeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCC
Q 021121 184 S----TMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDM 259 (317)
Q Consensus 184 ~----~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 259 (317)
. ...+......+..+.+-| +++.+|+++.|+.||||..++.+ ++..+..|...|++++|+|+.. ++|+++.|+
T Consensus 239 gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~-pLAVLkyHsagvn~vAfspd~~-lmAaaskD~ 315 (323)
T KOG0322|consen 239 GSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLN-PLAVLKYHSAGVNAVAFSPDCE-LMAAASKDA 315 (323)
T ss_pred CcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCC-chhhhhhhhcceeEEEeCCCCc-hhhhccCCc
Confidence 1 112222344678889999 99999999999999999999976 6899999999999999999977 899999999
Q ss_pred eEEEEec
Q 021121 260 TVCLWDF 266 (317)
Q Consensus 260 ~i~vwd~ 266 (317)
.|.+|++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9999986
No 195
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=5.2e-20 Score=143.16 Aligned_cols=250 Identities=21% Similarity=0.319 Sum_probs=186.1
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCC------CceeeccCCcceEEEEEecCCCCEEEEEcCCCEE
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTAN------PIRSLHEHTREVHSADYNPTRRDSFITSSWDDTV 131 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v 131 (317)
....++..+.|.+++.+.+++|+.|..|++|.+....... ....+..|...|+++.|+|+|. ++++|+.+|.|
T Consensus 11 H~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~v 89 (434)
T KOG1009|consen 11 HDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE-LLASGGDGGEV 89 (434)
T ss_pred cCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC-eeeecCCCceE
Confidence 4567899999999886699999999999999987654332 2345678999999999999998 99999999999
Q ss_pred EEEEcC--------C--------CceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccce
Q 021121 132 KLWTVD--------R--------PTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEI 195 (317)
Q Consensus 132 ~iwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 195 (317)
.+|-.. + ....+.+.+|...+..++|+|+ ++.+++++.|..+++||+..+.....+..|...+
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d-~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yv 168 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD-SNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYV 168 (434)
T ss_pred EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC-CceeeeeeccceEEEEEeccceeEeecccccccc
Confidence 999765 2 1223456678999999999999 8999999999999999999999999999999999
Q ss_pred EEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe-------------------cCC----CceeEEEecCCCCeeE
Q 021121 196 LACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN-------------------GHG----YAVRKVKFSPHRRNLL 252 (317)
Q Consensus 196 ~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-------------------~~~----~~v~~~~~~~~~~~~l 252 (317)
..++|.| -.+++++-+.|...+.+++...+. ..... -|. .-...++|+|+|. +|
T Consensus 169 qgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~-~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~-ll 245 (434)
T KOG1009|consen 169 QGVAWDP-LNQYVASKSSDRHPEGFSAKLKQV-IKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS-LL 245 (434)
T ss_pred ceeecch-hhhhhhhhccCcccceeeeeeeee-eeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc-EE
Confidence 9999999 889999999888777777654221 11000 011 2346789999998 67
Q ss_pred Eeeec----C-----CeEEEEecccccceeeeeecccceeEeEEEEecc----------------CCeEEEeecCCcEEE
Q 021121 253 ASCSY----D-----MTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLV----------------EGLLASTGWDELVYV 307 (317)
Q Consensus 253 ~~~~~----d-----~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~----------------~~~l~s~~~dg~i~~ 307 (317)
++.+. . +..++|+-...+.+...+.....+...+.|+|-- -+++++......|++
T Consensus 246 vtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyv 325 (434)
T KOG1009|consen 246 VTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYV 325 (434)
T ss_pred EcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEE
Confidence 65531 1 2234555444444555566666666666666630 113333334567899
Q ss_pred EecCC
Q 021121 308 WQQGM 312 (317)
Q Consensus 308 w~~~~ 312 (317)
||...
T Consensus 326 ydtq~ 330 (434)
T KOG1009|consen 326 YDTQT 330 (434)
T ss_pred ecccc
Confidence 99875
No 196
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.4e-20 Score=149.58 Aligned_cols=296 Identities=18% Similarity=0.251 Sum_probs=226.5
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCC-CCCeEEEEEcCCe
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSES-HDSLLIAAVADGS 84 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~ 84 (317)
|...|..+.|+. .+.++++++. |..|.+||.....+.+... .+|...|...+|-|. +..-+++++.||.
T Consensus 141 H~GcVntV~FN~--~Gd~l~SgSD------D~~vv~WdW~~~~~~l~f~--SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 141 HKGCVNTVHFNQ--RGDVLASGSD------DLQVVVWDWVSGSPKLSFE--SGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred CCCccceeeecc--cCceeeccCc------cceEEeehhhccCcccccc--cccccchhhhhccCCCCCcCceeccccCc
Confidence 788999999999 7888888887 8899999999877433322 278888888889885 4467999999999
Q ss_pred EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee---cccc---ceEEEEEe
Q 021121 85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK---EHAY---CVYNATWN 158 (317)
Q Consensus 85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~---~v~~~~~~ 158 (317)
|++=.+...+..+....+..|.++|..++.-|+.+.-|.+++.|+.+.-+|++.+.....+. .+.. ....++..
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 99988776544444556678999999999999999899999999999999998875433332 2233 57889999
Q ss_pred cCCCCeEEEEeCCCeEEEEeCCCCCc------eeeec------cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCC
Q 021121 159 PRHSDVFCSASGDCTLRIWDVREMGS------TMIIP------AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR 226 (317)
Q Consensus 159 ~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~------~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 226 (317)
|.+.+.+++++.|-.+++||.+.-.. +..+. .....|++++|+. ++.-+.++..|-.|++|....+.
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh-~~sElLaSYnDe~IYLF~~~~~~ 369 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSH-DGSELLASYNDEDIYLFNKSMGD 369 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecC-CccceeeeecccceEEecccccc
Confidence 99888999999999999999875322 12221 2234589999997 66666666778889999543221
Q ss_pred c-----------cEE-EEecCC--CceeEEEec-CCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEec
Q 021121 227 V-----------PIA-VLNGHG--YAVRKVKFS-PHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVL 291 (317)
Q Consensus 227 ~-----------~~~-~~~~~~--~~v~~~~~~-~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 291 (317)
- .+. .+++|. ..|..+-|- |... |+++|+.-|.|.||+-.+++ +++.+.+-..-|+|+.=+|.
T Consensus 370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE-yVvSGSDCGhIFiW~K~t~e-ii~~MegDr~VVNCLEpHP~ 447 (559)
T KOG1334|consen 370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE-YVVSGSDCGHIFIWDKKTGE-IIRFMEGDRHVVNCLEPHPH 447 (559)
T ss_pred CCCCCCCcchhhccchhhcccccccccceeeeccCccc-eEEecCccceEEEEecchhH-HHHHhhcccceEeccCCCCC
Confidence 1 112 256664 357777764 4555 89999999999999987776 67777777778999998887
Q ss_pred cCCeEEEeecCCcEEEEecCCCCC
Q 021121 292 VEGLLASTGWDELVYVWQQGMDPR 315 (317)
Q Consensus 292 ~~~~l~s~~~dg~i~~w~~~~~~~ 315 (317)
--+||++|-|.-|+||.-.+..+
T Consensus 448 -~PvLAsSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 448 -LPVLASSGIDHDVKIWTPLTAER 470 (559)
T ss_pred -CchhhccCCccceeeecCCcccc
Confidence 66999999999999998755444
No 197
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=7.7e-19 Score=148.99 Aligned_cols=291 Identities=16% Similarity=0.175 Sum_probs=194.6
Q ss_pred ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCC-CCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC
Q 021121 5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSP-AAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG 83 (317)
Q Consensus 5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 83 (317)
.|...+++.++|| .+++++++.. ||+|.+|.--. ...........=|...|.+++|+++| .+|++|+.+|
T Consensus 203 ~Htf~~t~~~~sp--n~~~~Aa~d~------dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~ 273 (792)
T KOG1963|consen 203 HHTFNITCVALSP--NERYLAAGDS------DGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREG 273 (792)
T ss_pred hhcccceeEEecc--ccceEEEecc------CCcEEEEeccccccccccceEEEecccccceeEEecCC-ceEeecccce
Confidence 4566689999999 7888888876 99999998654 22223333333477799999999999 5999999999
Q ss_pred eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeec-----------cccce
Q 021121 84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKE-----------HAYCV 152 (317)
Q Consensus 84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----------~~~~v 152 (317)
.+.+|.+.+++ ..-+..-.++|..+.++||+. +.+....|..|.+....+.+....+.+ ..+-.
T Consensus 274 VLv~Wq~~T~~----kqfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~ 348 (792)
T KOG1963|consen 274 VLVLWQLETGK----KQFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLT 348 (792)
T ss_pred EEEEEeecCCC----cccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccc
Confidence 99999998762 333455678999999999998 777778899999998765544333322 23446
Q ss_pred EEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee--------------------------------------------
Q 021121 153 YNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII-------------------------------------------- 188 (317)
Q Consensus 153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------------------------------------------- 188 (317)
+.++++|. .+.++-.+..|.|.+||+.+.+.+..+
T Consensus 349 t~~~idpr-~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~ 427 (792)
T KOG1963|consen 349 TGVSIDPR-TNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFD 427 (792)
T ss_pred eeEEEcCC-CCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccC
Confidence 67788886 666777788888888887543222111
Q ss_pred ------------------------ccCccceEEEEec-CCCCcEEEEEecCCcEEEEEccCCCc---------cEEEEec
Q 021121 189 ------------------------PAHEFEILACDWN-KYDDCLIASASVDKSIKIWDVRNYRV---------PIAVLNG 234 (317)
Q Consensus 189 ------------------------~~~~~~v~~i~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~---------~~~~~~~ 234 (317)
.+|+..+...++. +.....+++++.||.+++|-+...+. +...-.-
T Consensus 428 ~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy 507 (792)
T KOG1963|consen 428 GEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY 507 (792)
T ss_pred ceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc
Confidence 1233333333333 32333788999999999998843221 1222223
Q ss_pred CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEecc-CCeEEEeecCCcEEEEecCC
Q 021121 235 HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLV-EGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 235 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~~w~~~~ 312 (317)
|..+++.++|+.||. +++.+.|++|.+||..+...+.........++..+.+.... ....+.....+.+.+|++-.
T Consensus 508 ~k~~i~a~~fs~dGs--lla~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~ 584 (792)
T KOG1963|consen 508 HKTPITALCFSQDGS--LLAVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLS 584 (792)
T ss_pred ccCcccchhhcCCCc--EEEEecCCEEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEehHhhhh
Confidence 788999999999997 55567799999999988443433333333444444443321 11233333456777887643
No 198
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.85 E-value=5.8e-21 Score=160.91 Aligned_cols=241 Identities=20% Similarity=0.339 Sum_probs=188.7
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD 137 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 137 (317)
+|.+.|+|+.|...| .++++|+.|..++||..++. .++....+|.+.|+.++.+.... ++++++.|..|++|.+.
T Consensus 188 gH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~---~~lAs~rGhs~ditdlavs~~n~-~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETA---RCLASCRGHSGDITDLAVSSNNT-MIAAASNDKVIRVWRLP 262 (1113)
T ss_pred hhhhheeeeeecccc-ceEeecCccceeeeeeccch---hhhccCCCCccccchhccchhhh-hhhhcccCceEEEEecC
Confidence 688899999999998 79999999999999998766 88889999999999999998776 89999999999999999
Q ss_pred CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee----c-cCcc-------------------
Q 021121 138 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII----P-AHEF------------------- 193 (317)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~-~~~~------------------- 193 (317)
++.++..+.+|++.|++++|+|- . +.+.||++++||.+- .+.... . ....
T Consensus 263 ~~~pvsvLrghtgavtaiafsP~-~----sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSPR-A----SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred CCchHHHHhccccceeeeccCcc-c----cCCCCCceEeccccc-cccccCCCCCCcccccceeeeeccccccccccccC
Confidence 99999999999999999999997 3 788999999999871 111000 0 0000
Q ss_pred -------ceEEEEecCCCC-----------cEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEee
Q 021121 194 -------EILACDWNKYDD-----------CLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASC 255 (317)
Q Consensus 194 -------~v~~i~~~~~~~-----------~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 255 (317)
.+.+++|.. .. .+.+++-.+-.+.+|++.++.. .+.+.+|...+..+.++|.+..+..++
T Consensus 337 d~ea~n~e~~~l~~~~-~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l-~H~l~ghsd~~yvLd~Hpfn~ri~msa 414 (1113)
T KOG0644|consen 337 DGEARNHEFEQLAWRS-NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL-LHNLMGHSDEVYVLDVHPFNPRIAMSA 414 (1113)
T ss_pred CcccccchhhHhhhhc-cceEEEeccccccccceeeeeeeEeeeeecccchh-hhhhcccccceeeeeecCCCcHhhhhc
Confidence 111222222 22 2223333445577788877653 677778999999999999998778899
Q ss_pred ecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121 256 SYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 256 ~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
+.||...|||+-.+.+......+| +.+..-.||++ +..++....-|.++|......
T Consensus 415 g~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqd-gts~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 415 GYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQD-GTSIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred cCCCceEeeecccCCcceeeeccc-ceeeccccCCC-CceEecCCCCCceEEeccCCC
Confidence 999999999998887555555564 55777899999 778888888898988876543
No 199
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.1e-20 Score=149.88 Aligned_cols=216 Identities=19% Similarity=0.198 Sum_probs=166.3
Q ss_pred CceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee-ccccceEEEEEecCC-CCeEEEEeCCCeEE
Q 021121 98 PIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK-EHAYCVYNATWNPRH-SDVFCSASGDCTLR 175 (317)
Q Consensus 98 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~ 175 (317)
....+.+|.+.|+|+.|+.+|. +|++|+.|-.+.|||.-..+.+..+. +|...|.++.|-|.. ..++++|..|..|+
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhhccccceecceeecCCCC-EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 3446789999999999999998 99999999999999998888777664 799999999999963 45788899999999
Q ss_pred EEeCCC----------CCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec---------CC
Q 021121 176 IWDVRE----------MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG---------HG 236 (317)
Q Consensus 176 i~d~~~----------~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---------~~ 236 (317)
+||+.. .+....+..|...|..++..|...+.+.++++||+|+-+|++....+...... .-
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 999984 23445566788889999999956699999999999999999975432222111 11
Q ss_pred CceeEEEecCCCCeeEEeeecCCeEEEEeccccc-----------c------eeeee-eccc-----------ceeEeEE
Q 021121 237 YAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED-----------A------LVGRY-DHHT-----------EFAVGVD 287 (317)
Q Consensus 237 ~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~-----------~------~~~~~-~~~~-----------~~v~~~~ 287 (317)
-...++..+|..+++|+.|+.|-..++||.+... + ++..+ .+|- ..++-+.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 3467899999999999999999999999943211 0 11111 1121 1367789
Q ss_pred EEeccCCeEEEeecCCcEEEEecCCCCC
Q 021121 288 MSVLVEGLLASTGWDELVYVWQQGMDPR 315 (317)
Q Consensus 288 ~~~~~~~~l~s~~~dg~i~~w~~~~~~~ 315 (317)
|+|+|..+|++-+.+ .|+++|++.++.
T Consensus 281 fnpNGtElLvs~~gE-hVYlfdvn~~~~ 307 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGE-HVYLFDVNEDKS 307 (758)
T ss_pred ECCCCcEEEEeeCCe-EEEEEeecCCCC
Confidence 999966777777654 599999987654
No 200
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=5.8e-19 Score=152.56 Aligned_cols=246 Identities=15% Similarity=0.177 Sum_probs=178.6
Q ss_pred CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeecc---CCcceEEEEEec-CCCCEEEEEcCCCEEEEEEcC
Q 021121 62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHE---HTREVHSADYNP-TRRDSFITSSWDDTVKLWTVD 137 (317)
Q Consensus 62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~-~~~~~l~~~~~dg~v~iwd~~ 137 (317)
.-..+.|+|-.+ .++++...-.|++||.+.+ +.+..+.. ....|+.+.+-. +...++++|+.||.|+||+--
T Consensus 1066 ~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~---~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP-QIAAADDRERIRVWDWEKG---RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred CCceeeecCCCc-eeEEcCCcceEEEEecccC---ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 456788999874 8888877788999999876 44444443 346788888743 334489999999999999643
Q ss_pred CC-----ceeEEee-------ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec-cCccceEEEEecCCC
Q 021121 138 RP-----TSVRTFK-------EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP-AHEFEILACDWNKYD 204 (317)
Q Consensus 138 ~~-----~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~i~~~~~~ 204 (317)
.. +.+..+. +..+.-.-+.|....+ .|+++++-..|+|||.........+. +.+..++++.-+...
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC
Confidence 22 2222221 1112224567887744 45555668899999998776666554 334557777766556
Q ss_pred CcEEEEEecCCcEEEEEccCCCc--cEEEEecCCCc--eeEEEecCCCCeeEEeeecCCeEEEEecccc-cceeeeeecc
Q 021121 205 DCLIASASVDKSIKIWDVRNYRV--PIAVLNGHGYA--VRKVKFSPHRRNLLASCSYDMTVCLWDFMVE-DALVGRYDHH 279 (317)
Q Consensus 205 ~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~ 279 (317)
++.+++|..||.|++||.|.... .+...+.|+.. |..+.+.+.|-.-|++|+.||.|++||++.. .........|
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~ 1300 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH 1300 (1387)
T ss_pred CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec
Confidence 89999999999999999997643 56777788877 9999999877545999999999999999984 2222233333
Q ss_pred c--c-eeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121 280 T--E-FAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP 314 (317)
Q Consensus 280 ~--~-~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~ 314 (317)
. + ..+++..+++ ..++|+|+. +.|+||++..++
T Consensus 1301 ~~yGs~lTal~VH~h-apiiAsGs~-q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHEH-APIIASGSA-QLIKIYSLSGEQ 1336 (1387)
T ss_pred cccCccceeeeeccC-CCeeeecCc-ceEEEEecChhh
Confidence 2 3 5899999998 789999988 999999997654
No 201
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=6.1e-18 Score=130.14 Aligned_cols=287 Identities=17% Similarity=0.187 Sum_probs=186.5
Q ss_pred CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEE
Q 021121 7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVK 86 (317)
Q Consensus 7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 86 (317)
+..+..++|+++ -..+++++. |-.|++|+-+... ...........|+|++|-|.+...|+.|+..| |.
T Consensus 98 ~~dlr~~aWhqH-~~~fava~n-------ddvVriy~ksst~---pt~Lks~sQrnvtclawRPlsaselavgCr~g-Ic 165 (445)
T KOG2139|consen 98 EIDLRGVAWHQH-IIAFAVATN-------DDVVRIYDKSSTC---PTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-IC 165 (445)
T ss_pred hcceeeEeechh-hhhhhhhcc-------CcEEEEeccCCCC---CceecchhhcceeEEEeccCCcceeeeeecce-eE
Confidence 345678999994 556666665 7799999977633 22222245667999999999888999999877 99
Q ss_pred EEEeCCCCCCCC-----------ceeeccCCcceEEEEEecCCCCEEEEEc-CCCEEEEEEcCCCceeEEeeccccceEE
Q 021121 87 IYDTALPPTANP-----------IRSLHEHTREVHSADYNPTRRDSFITSS-WDDTVKLWTVDRPTSVRTFKEHAYCVYN 154 (317)
Q Consensus 87 v~~~~~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 154 (317)
+|..+....... +....+| .+|+++.|++||. .+++++ .|..|.|||+.++..+.......+.+.-
T Consensus 166 iW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~sl 243 (445)
T KOG2139|consen 166 IWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSL 243 (445)
T ss_pred EEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCcccccccCCCceee
Confidence 998765321111 1122344 6899999999998 777765 4678999999998877655445667899
Q ss_pred EEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccE-----
Q 021121 155 ATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPI----- 229 (317)
Q Consensus 155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~----- 229 (317)
+.|+|+ +..+.+++-|+..++|+..+...........+.|...+|+| .|..|+.... |.-++|.+.-..++.
T Consensus 244 LkwSPd-gd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWsp-cGsfLLf~~s-gsp~lysl~f~~~~~~~~~~ 320 (445)
T KOG2139|consen 244 LKWSPD-GDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSP-CGSFLLFACS-GSPRLYSLTFDGEDSVFLRP 320 (445)
T ss_pred EEEcCC-CCEEEEecccceeeeehhcccceecceeccCCceeeeeecC-CCCEEEEEEc-CCceEEEEeecCCCccccCc
Confidence 999999 88888999999999996554433233333445899999999 6665544432 334455443211100
Q ss_pred ---------EEE------ec---CCCceeEEEecCCCCeeEEeeecCC--------eEEEEecccccceeeeeec--ccc
Q 021121 230 ---------AVL------NG---HGYAVRKVKFSPHRRNLLASCSYDM--------TVCLWDFMVEDALVGRYDH--HTE 281 (317)
Q Consensus 230 ---------~~~------~~---~~~~v~~~~~~~~~~~~l~~~~~d~--------~i~vwd~~~~~~~~~~~~~--~~~ 281 (317)
..+ .+ -.+.+.+++|.|.|. +|++.-..+ .|.+||.+..-.....+-+ ...
T Consensus 321 ~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe-yLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge 399 (445)
T KOG2139|consen 321 QSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE-YLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGE 399 (445)
T ss_pred ccceeeeeeccchhhhhhcCcccccCccceeeECCCCC-EEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCC
Confidence 000 01 145788999999999 576655433 3667777654322111111 111
Q ss_pred eeEeEEEEecc--CCeEEEeecCCcEEEEecC
Q 021121 282 FAVGVDMSVLV--EGLLASTGWDELVYVWQQG 311 (317)
Q Consensus 282 ~v~~~~~~~~~--~~~l~s~~~dg~i~~w~~~ 311 (317)
....++|+|.. +.+|..+=..|.+.-|++.
T Consensus 400 ~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 400 YPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred CCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 24456666642 3355556567888877764
No 202
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.85 E-value=4.9e-19 Score=149.70 Aligned_cols=236 Identities=12% Similarity=0.139 Sum_probs=157.2
Q ss_pred CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC---CeEEEEEeCCCCCCCCceeeccCCcceEEE
Q 021121 36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD---GSVKIYDTALPPTANPIRSLHEHTREVHSA 112 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (317)
+..|.+||.+... ...+ ..+...+...+|+|+|+ .|+..+.+ ..|.+||+..+. ...+..+.+| ...+
T Consensus 183 ~~~i~i~d~dg~~--~~~l--t~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~-~~~l~~~~g~---~~~~ 253 (429)
T PRK01742 183 PYEVRVADYDGFN--QFIV--NRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGA-RKVVASFRGH---NGAP 253 (429)
T ss_pred eEEEEEECCCCCC--ceEe--ccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCc-eEEEecCCCc---cCce
Confidence 4689999987654 2222 25667899999999995 66665543 369999987641 1223333333 3468
Q ss_pred EEecCCCCEEEE-EcCCCEEEEE--EcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCC-ceeee
Q 021121 113 DYNPTRRDSFIT-SSWDDTVKLW--TVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMG-STMII 188 (317)
Q Consensus 113 ~~~~~~~~~l~~-~~~dg~v~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~ 188 (317)
+|+|+|+ .|+. .+.+|.+.|| |+.+++ ...+..+...+....|+|++..+++++..+|...+|+++... ....+
T Consensus 254 ~wSPDG~-~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 254 AFSPDGS-RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred eECCCCC-EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 9999998 5555 4567865555 665554 345555666788999999943445455567888888875432 22222
Q ss_pred ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121 189 PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV 268 (317)
Q Consensus 189 ~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~ 268 (317)
.+.. .+..|+| +++.++..+.++ +.+||+.+++. ..+... .....+.|+|+++ +|+.++.++.+.+|++.+
T Consensus 332 -~~~~--~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g~~--~~lt~~-~~~~~~~~sPdG~-~i~~~s~~g~~~~l~~~~ 402 (429)
T PRK01742 332 -GGRG--YSAQISA-DGKTLVMINGDN-VVKQDLTSGST--EVLSST-FLDESPSISPNGI-MIIYSSTQGLGKVLQLVS 402 (429)
T ss_pred -cCCC--CCccCCC-CCCEEEEEcCCC-EEEEECCCCCe--EEecCC-CCCCCceECCCCC-EEEEEEcCCCceEEEEEE
Confidence 3333 4678999 888888877655 66699987653 222222 1335688999999 688788888888887643
Q ss_pred -ccceeeeeecccceeEeEEEEec
Q 021121 269 -EDALVGRYDHHTEFAVGVDMSVL 291 (317)
Q Consensus 269 -~~~~~~~~~~~~~~v~~~~~~~~ 291 (317)
.......+..|.+.+...+|+|-
T Consensus 403 ~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 403 ADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCceEEccCCCCCCCCcccCCC
Confidence 22356677778888899999984
No 203
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=1.6e-19 Score=149.12 Aligned_cols=233 Identities=17% Similarity=0.325 Sum_probs=175.9
Q ss_pred CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce
Q 021121 62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS 141 (317)
Q Consensus 62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 141 (317)
.|..++|-|||..+++++ +..+.+||...+ ..+.++++|+..|+|++|+.+|+ .+++|+.|..|.+|..+-..
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG---~llqtLKgHKDtVycVAys~dGk-rFASG~aDK~VI~W~~klEG- 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDG---TLLQPLKGHKDTVYCVAYAKDGK-RFASGSADKSVIIWTSKLEG- 86 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCc---ccccccccccceEEEEEEccCCc-eeccCCCceeEEEecccccc-
Confidence 799999999996444444 457999999877 78889999999999999999999 99999999999999864322
Q ss_pred eEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEE
Q 021121 142 VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWD 221 (317)
Q Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d 221 (317)
+.++ .|.+.|.|+.|+|- .+.+++++-. ..-+|...+... ...+ ....+.+++|.. +|++++.|..+|+|.+-+
T Consensus 87 ~LkY-SH~D~IQCMsFNP~-~h~LasCsLs-dFglWS~~qK~V-~K~k-ss~R~~~CsWtn-DGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 87 ILKY-SHNDAIQCMSFNPI-THQLASCSLS-DFGLWSPEQKSV-SKHK-SSSRIICCSWTN-DGQYLALGMFNGTISIRN 160 (1081)
T ss_pred eeee-ccCCeeeEeecCch-HHHhhhcchh-hccccChhhhhH-Hhhh-hheeEEEeeecC-CCcEEEEeccCceEEeec
Confidence 2233 48899999999998 7888887754 467888765332 2222 345688999998 999999999999999986
Q ss_pred ccCCCccEEE--EecCCCceeEEEecCCCC----eeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCe
Q 021121 222 VRNYRVPIAV--LNGHGYAVRKVKFSPHRR----NLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGL 295 (317)
Q Consensus 222 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~----~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 295 (317)
..... .... ..+.+++|.+++|+|... ..++......++.++.+.... +..-+.-+-...++++.++ +.+
T Consensus 161 k~gEe-k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~--Igk~r~L~FdP~CisYf~N-GEy 236 (1081)
T KOG1538|consen 161 KNGEE-KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ--IGKDRALNFDPCCISYFTN-GEY 236 (1081)
T ss_pred CCCCc-ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee--ecccccCCCCchhheeccC-CcE
Confidence 54322 2222 234678999999999642 267778888888888775432 2222222334567888888 889
Q ss_pred EEEeecCCcEEEEecC
Q 021121 296 LASTGWDELVYVWQQG 311 (317)
Q Consensus 296 l~s~~~dg~i~~w~~~ 311 (317)
++.||.|+.+.+|.-+
T Consensus 237 ~LiGGsdk~L~~fTR~ 252 (1081)
T KOG1538|consen 237 ILLGGSDKQLSLFTRD 252 (1081)
T ss_pred EEEccCCCceEEEeec
Confidence 9999999999888643
No 204
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.84 E-value=2.1e-19 Score=144.71 Aligned_cols=208 Identities=15% Similarity=0.265 Sum_probs=160.4
Q ss_pred CCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCc
Q 021121 20 ESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPI 99 (317)
Q Consensus 20 ~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~ 99 (317)
.+.|+++++ ||++.|.+-...- +.....|.+.+.+-.|+|+| .-|++++.||.|++|.-.. ...
T Consensus 75 ~d~~~i~s~-------DGkf~il~k~~rV----E~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrsG----MLR 138 (737)
T KOG1524|consen 75 SDTLLICSN-------DGRFVILNKSARV----ERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRSG----MLR 138 (737)
T ss_pred cceEEEEcC-------CceEEEecccchh----hhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEeccc----hHH
Confidence 345555555 8999988754432 12223688999999999999 5889999999999999442 344
Q ss_pred eeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeC
Q 021121 100 RSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV 179 (317)
Q Consensus 100 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~ 179 (317)
.++.....+|.|++|.|+.+..+++.+ +.+.|=.+.....+...+.|.+-|.++.|++. .+++++|++|-..++||-
T Consensus 139 Stl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~-s~lI~sgGED~kfKvWD~ 215 (737)
T KOG1524|consen 139 STVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQ-SNIIASGGEDFRFKIWDA 215 (737)
T ss_pred HHHhhcCceeEEEEECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCcc-ccceeecCCceeEEeecc
Confidence 455567889999999999986666655 56666666666777788999999999999999 899999999999999996
Q ss_pred CCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCC
Q 021121 180 REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDM 259 (317)
Q Consensus 180 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 259 (317)
. +..+..-..|+.+|++++|+| + ..++.++. .+++ ......+.|..++||+||.. +++|...|
T Consensus 216 ~-G~~Lf~S~~~ey~ITSva~np-d-~~~~v~S~-nt~R------------~~~p~~GSifnlsWS~DGTQ-~a~gt~~G 278 (737)
T KOG1524|consen 216 Q-GANLFTSAAEEYAITSVAFNP-E-KDYLLWSY-NTAR------------FSSPRVGSIFNLSWSADGTQ-ATCGTSTG 278 (737)
T ss_pred c-CcccccCChhccceeeeeecc-c-cceeeeee-eeee------------ecCCCccceEEEEEcCCCce-eeccccCc
Confidence 5 667777778999999999999 6 56665553 2333 22234568999999999995 88888888
Q ss_pred eEEE
Q 021121 260 TVCL 263 (317)
Q Consensus 260 ~i~v 263 (317)
.+.+
T Consensus 279 ~v~~ 282 (737)
T KOG1524|consen 279 QLIV 282 (737)
T ss_pred eEEE
Confidence 7654
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=8.4e-20 Score=142.74 Aligned_cols=198 Identities=19% Similarity=0.232 Sum_probs=155.1
Q ss_pred eEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeE
Q 021121 64 YDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVR 143 (317)
Q Consensus 64 ~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 143 (317)
.+++|+.+| ..+++|+.||.+|+|+.... ..+.....|.+.|.++.|+||++ .|++-+.| ..+||+.+++..+.
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~---~t~l~e~~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSM---LTILEEIAHHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNTGAALA 221 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcc---hhhhhhHhhcCccccceeCCCCc-EEEEecCC-ceEEEEeccCchhh
Confidence 678999997 69999999999999998765 66667778999999999999998 89999999 99999999996666
Q ss_pred Eee--ccccceEEEEEecCC---C-CeEEEEeCCCeEEEEeCCCCCc-----eeeeccCccceEEEEecCCCCcEEEEEe
Q 021121 144 TFK--EHAYCVYNATWNPRH---S-DVFCSASGDCTLRIWDVREMGS-----TMIIPAHEFEILACDWNKYDDCLIASAS 212 (317)
Q Consensus 144 ~~~--~~~~~v~~~~~~~~~---~-~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~v~~i~~~~~~~~~l~~~~ 212 (317)
... ........+.|+.++ . .+++.....+.|+.||+...+. ..+.......|.+++.++ +|++++.|+
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT 300 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGT 300 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEec
Confidence 554 223456677787762 1 2333334456677776643321 111122334699999999 999999999
Q ss_pred cCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccc
Q 021121 213 VDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE 269 (317)
Q Consensus 213 ~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~ 269 (317)
.||.|.+++..+.+.....-+.|...|+.+.|+|+.+ ++++.+.|..+.|..+.-.
T Consensus 301 ~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr-~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 301 MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSR-YLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcC-cccccccCCceeEEEEeec
Confidence 9999999999988765566678999999999999998 5888888999888877653
No 206
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.84 E-value=1.1e-17 Score=128.94 Aligned_cols=197 Identities=15% Similarity=0.219 Sum_probs=149.7
Q ss_pred eeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEE
Q 021121 10 GYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYD 89 (317)
Q Consensus 10 v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~ 89 (317)
|.-+-|+. ..+++.+-.. ...++++++.+.. .+.....+..|.++.++.+ .|+++-.+ .|.|||
T Consensus 49 IvEmLFSS---SLvaiV~~~q-----pr~Lkv~~~Kk~~----~ICe~~fpt~IL~VrmNr~---RLvV~Lee-~IyIyd 112 (391)
T KOG2110|consen 49 IVEMLFSS---SLVAIVSIKQ-----PRKLKVVHFKKKT----TICEIFFPTSILAVRMNRK---RLVVCLEE-SIYIYD 112 (391)
T ss_pred EEEeeccc---ceeEEEecCC-----CceEEEEEcccCc----eEEEEecCCceEEEEEccc---eEEEEEcc-cEEEEe
Confidence 44455665 3444444331 3568888887654 4555567788999999964 45555554 499999
Q ss_pred eCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEE--cCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEE
Q 021121 90 TALPPTANPIRSLHEHTREVHSADYNPTRRDSFITS--SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCS 167 (317)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~--~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 167 (317)
++..+-...+.....+...+.++.+++.+. +++-= ...|.|.+||+.+-+....+..|++++-+++|+++ |.++|+
T Consensus 113 I~~MklLhTI~t~~~n~~gl~AlS~n~~n~-ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~-G~llAT 190 (391)
T KOG2110|consen 113 IKDMKLLHTIETTPPNPKGLCALSPNNANC-YLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPD-GTLLAT 190 (391)
T ss_pred cccceeehhhhccCCCccceEeeccCCCCc-eEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCC-CCEEEE
Confidence 998733333333444566677777776655 55532 34689999999999999999999999999999999 999999
Q ss_pred EeCCCe-EEEEeCCCCCceeeeccCc--cceEEEEecCCCCcEEEEEecCCcEEEEEccCC
Q 021121 168 ASGDCT-LRIWDVREMGSTMIIPAHE--FEILACDWNKYDDCLIASASVDKSIKIWDVRNY 225 (317)
Q Consensus 168 ~~~dg~-i~i~d~~~~~~~~~~~~~~--~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~ 225 (317)
+++.|+ ||++.+.+++.+..++... ..|.+++|+| ++++|++.+..++|++|.+...
T Consensus 191 ASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~-ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 191 ASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP-DSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred eccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC-CCCeEEEecCCCeEEEEEeccc
Confidence 999998 7999999999988887433 3588999999 9999999999999999998764
No 207
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.84 E-value=2.2e-20 Score=147.61 Aligned_cols=269 Identities=17% Similarity=0.248 Sum_probs=209.7
Q ss_pred CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEE
Q 021121 7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVK 86 (317)
Q Consensus 7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 86 (317)
.+..+.+.++. +++.++.++. .|.|-.+|..+.. ....+.-.+.|.++.|-.+. .++|++- ...+.
T Consensus 129 eFGPY~~~ytr--nGrhlllgGr------KGHlAa~Dw~t~~----L~~Ei~v~Etv~Dv~~LHne-q~~AVAQ-K~y~y 194 (545)
T KOG1272|consen 129 EFGPYHLDYTR--NGRHLLLGGR------KGHLAAFDWVTKK----LHFEINVMETVRDVTFLHNE-QFFAVAQ-KKYVY 194 (545)
T ss_pred ccCCeeeeecC--CccEEEecCC------ccceeeeecccce----eeeeeehhhhhhhhhhhcch-HHHHhhh-hceEE
Confidence 34567788888 6777777775 8999999998765 33444667789999999875 5777764 56799
Q ss_pred EEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEE
Q 021121 87 IYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFC 166 (317)
Q Consensus 87 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 166 (317)
|||-. +..+..++. ...|..+.|.|--- +|++++..|.++.-|+.+|+.+..+....+.+..++-+|. ...+-
T Consensus 195 vYD~~----GtElHClk~-~~~v~rLeFLPyHf-LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~-NaVih 267 (545)
T KOG1272|consen 195 VYDNN----GTELHCLKR-HIRVARLEFLPYHF-LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPY-NAVIH 267 (545)
T ss_pred EecCC----CcEEeehhh-cCchhhhcccchhh-eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCc-cceEE
Confidence 99943 345555554 35788999999865 8889999999999999999999999888899999999998 78888
Q ss_pred EEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecC
Q 021121 167 SASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSP 246 (317)
Q Consensus 167 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~ 246 (317)
+|...|+|.+|.....+++..+..|.++|.++++.+ +|++++|.+.|..++|||+|+..++..... ..+...+++|.
T Consensus 268 ~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~a~~ls~Sq 344 (545)
T KOG1272|consen 268 LGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRT--PHPASNLSLSQ 344 (545)
T ss_pred EcCCCceEEecCCCCcchHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeeccccccceeec--CCCcccccccc
Confidence 999999999999999999999999999999999999 999999999999999999999876444444 34677899987
Q ss_pred CCCeeEEeeecCCeEEEEecccc-c-ceeeeeecc--cceeEeEEEEeccCCeEEEeecCC
Q 021121 247 HRRNLLASCSYDMTVCLWDFMVE-D-ALVGRYDHH--TEFAVGVDMSVLVEGLLASTGWDE 303 (317)
Q Consensus 247 ~~~~~l~~~~~d~~i~vwd~~~~-~-~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~dg 303 (317)
.| +||. +....+.||.=... . .....+-.| .++|.++.|.|- ++.|-.|-..|
T Consensus 345 kg--lLA~-~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~-EDvLGIGH~~G 401 (545)
T KOG1272|consen 345 KG--LLAL-SYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPY-EDVLGIGHAGG 401 (545)
T ss_pred cc--ceee-ecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccH-HHeeeccccCC
Confidence 76 4554 45567999952211 1 111111122 358999999997 66666665554
No 208
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.84 E-value=6.9e-19 Score=141.70 Aligned_cols=205 Identities=16% Similarity=0.199 Sum_probs=150.2
Q ss_pred eEEEEecCCCCCcceeeeee-cCCCCeeEEEec-----CCCCCeEEEEEcCCeEEEEEeCCCCCCCCce-eeccCCcceE
Q 021121 38 RVHVLDLSPAAPALTELVAF-DTADGVYDLAWS-----ESHDSLLIAAVADGSVKIYDTALPPTANPIR-SLHEHTREVH 110 (317)
Q Consensus 38 ~i~i~~~~~~~~~~~~~~~~-~~~~~v~~~~~~-----~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~~~~~v~ 110 (317)
.+++|++.........+... -......|=+|+ |.+ .-++.|-..|.|++.|....+..+... .....+..|+
T Consensus 145 ~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g-~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT 223 (636)
T KOG2394|consen 145 ELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKG-LDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVT 223 (636)
T ss_pred eEEEEEccCcchhccchhhhcccCCCCceecccccccCCCC-cceEEeeccCceEEecchhhHHHHhhhhcccccccceE
Confidence 78999987433212222111 111223334442 344 467788888999999876431111111 1112357899
Q ss_pred EEEEecCCCCEEEEEcCCCEEEEEEcCCC----------------------------ceeEEeeccccceEEEEEecCCC
Q 021121 111 SADYNPTRRDSFITSSWDDTVKLWTVDRP----------------------------TSVRTFKEHAYCVYNATWNPRHS 162 (317)
Q Consensus 111 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~----------------------------~~~~~~~~~~~~v~~~~~~~~~~ 162 (317)
|+.|-|.+...++++-.+|.+++||.+-. .++..+.-.++.|+.++|+|| +
T Consensus 224 ~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D-G 302 (636)
T KOG2394|consen 224 CIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPD-G 302 (636)
T ss_pred EEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCC-C
Confidence 99999988888999999999999976321 111122223457899999997 9
Q ss_pred CeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEE
Q 021121 163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKV 242 (317)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~ 242 (317)
++|++.+.||.++|||..+.+.+..++..-+...|++|+| |+++|++|++|..|.||.+...+ .+..-.+|+++|..+
T Consensus 303 ~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erR-VVARGqGHkSWVs~V 380 (636)
T KOG2394|consen 303 KYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERR-VVARGQGHKSWVSVV 380 (636)
T ss_pred ceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccce-EEEeccccccceeeE
Confidence 9999999999999999999888888877778899999999 99999999999999999998865 478888999999999
Q ss_pred EecC
Q 021121 243 KFSP 246 (317)
Q Consensus 243 ~~~~ 246 (317)
+|.|
T Consensus 381 aFDp 384 (636)
T KOG2394|consen 381 AFDP 384 (636)
T ss_pred eecc
Confidence 9997
No 209
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=1.6e-18 Score=134.48 Aligned_cols=270 Identities=14% Similarity=0.150 Sum_probs=198.6
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceee----eeecCCCCeeEEEecCCCCCeEEEEEc
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTEL----VAFDTADGVYDLAWSESHDSLLIAAVA 81 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~ 81 (317)
....+.+++|.-++...++.+.+. +-.+..+.+....- ...+ ........|..++.. + ..|++|-.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~------~~~~~~~~~~E~~~-~s~~~~~~~~~l~~~~I~gl~~~-d--g~Litc~~ 123 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSA------DDDLPKFVIEEFEI-SSSLDDAKTVSLGTKSIKGLKLA-D--GTLITCVS 123 (412)
T ss_pred hhhhhhhheeecCCceeEeecccc------CcccccccccCCcc-ccccccccccccccccccchhhc-C--CEEEEEec
Confidence 345677888887777777777743 55666666655431 1111 122345567777665 2 37888889
Q ss_pred CCeEEEEEeCCCCC-CCCceeeccCCcceEEEEEecCCCCEEEEEcCC--CEEEEEEcCCCceeEEeecc---------c
Q 021121 82 DGSVKIYDTALPPT-ANPIRSLHEHTREVHSADYNPTRRDSFITSSWD--DTVKLWTVDRPTSVRTFKEH---------A 149 (317)
Q Consensus 82 dg~i~v~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~v~iwd~~~~~~~~~~~~~---------~ 149 (317)
+|.+++|..+.+.. ..++..+..+ ..+..+.-.+..+.++++|+.. ..+.+||++..+.+..-+.. .
T Consensus 124 sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVP 202 (412)
T KOG3881|consen 124 SGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVP 202 (412)
T ss_pred CCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceee
Confidence 99999999885431 1233333333 5566777777777788889998 89999999988655543321 2
Q ss_pred cceEEEEEecC-CCCeEEEEeCCCeEEEEeCCCC-CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCc
Q 021121 150 YCVYNATWNPR-HSDVFCSASGDCTLRIWDVREM-GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV 227 (317)
Q Consensus 150 ~~v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 227 (317)
-.++++.|.+. ....|++++.-+.+++||.+.+ +++..+.-.+.++.++...| +++++++|..-+.+..||++.++.
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl 281 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKL 281 (412)
T ss_pred eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCcee
Confidence 35678888764 2567999999999999999876 56778887889999999999 999999999999999999999887
Q ss_pred cEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEe
Q 021121 228 PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSV 290 (317)
Q Consensus 228 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 290 (317)
....+.+..+.|+++..+|.++ ++++++-|..++|+|+.+.+.+...+- ...++.+-+.+
T Consensus 282 ~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~ktrkll~kvYv--Ks~lt~il~~~ 341 (412)
T KOG3881|consen 282 LGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKTRKLLHKVYV--KSRLTFILLRD 341 (412)
T ss_pred eccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeecccchhhhhhhh--hccccEEEecC
Confidence 6666888999999999999998 899999999999999999663333222 33456666644
No 210
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=1e-18 Score=135.48 Aligned_cols=250 Identities=12% Similarity=0.165 Sum_probs=195.1
Q ss_pred ecCCCCeeEEEecCCCCCeEEEEE-cCCeEEEEEeCCCCCCCC---ceeeccCCcceEEEEEecCCCCEEEEEcCCCEEE
Q 021121 57 FDTADGVYDLAWSESHDSLLIAAV-ADGSVKIYDTALPPTANP---IRSLHEHTREVHSADYNPTRRDSFITSSWDDTVK 132 (317)
Q Consensus 57 ~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~v~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~ 132 (317)
.+....|..++|..+++.-++.+. .+..+..+.+........ .........+|..++... + .|++|-.+|.+.
T Consensus 52 ~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d-g--~Litc~~sG~l~ 128 (412)
T KOG3881|consen 52 VDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD-G--TLITCVSSGNLQ 128 (412)
T ss_pred cchhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC-C--EEEEEecCCcEE
Confidence 345567889999877765555555 666777777665421111 112334466777776652 2 688999999999
Q ss_pred EEEcCCCc----eeEEeeccccceEEEEEecCCCCeEEEEeCC--CeEEEEeCCCCCceeeeccC---------ccceEE
Q 021121 133 LWTVDRPT----SVRTFKEHAYCVYNATWNPRHSDVFCSASGD--CTLRIWDVREMGSTMIIPAH---------EFEILA 197 (317)
Q Consensus 133 iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~---------~~~v~~ 197 (317)
+|..+.+. .+..+..+ ..+..+.-++..+.++++|+.. ..+.+||+++.+++..-+.- .-.++.
T Consensus 129 ~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 129 VRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred EEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 99988442 33344433 4577888888878888889999 89999999988655443321 123678
Q ss_pred EEecCCC--CcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeee
Q 021121 198 CDWNKYD--DCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGR 275 (317)
Q Consensus 198 i~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 275 (317)
+.|-+ . ...|++++.-+.+++||.+.++.|+..+.-...+++++...|.+. ++++|..-+.+..||.+.++.....
T Consensus 208 i~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~ 285 (412)
T KOG3881|consen 208 IRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGN-FIYTGNTKGQLAKFDLRGGKLLGCG 285 (412)
T ss_pred ceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCc-EEEEecccchhheecccCceeeccc
Confidence 88887 5 789999999999999999999999999988889999999999998 7999999999999999999866666
Q ss_pred eecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121 276 YDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 276 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
+.+-.+.|+++..+|. ..+++++|-|+.|||+|+.+.
T Consensus 286 ~kg~tGsirsih~hp~-~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 286 LKGITGSIRSIHCHPT-HPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred cCCccCCcceEEEcCC-CceEEeeccceeEEEeecccc
Confidence 8899999999999997 789999999999999999873
No 211
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.83 E-value=2.3e-17 Score=124.90 Aligned_cols=239 Identities=11% Similarity=0.114 Sum_probs=166.3
Q ss_pred eeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCC------CEEEEEEc
Q 021121 63 VYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD------DTVKLWTV 136 (317)
Q Consensus 63 v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~iwd~ 136 (317)
...++|+.|. ..+++|..+| .+||+.+.-+...... +....-.+..+-|-. +.+.++|+.+ ..|.|||=
T Consensus 8 ~lsvs~NQD~-ScFava~~~G-friyn~~P~ke~~~r~-~~~~G~~~veMLfR~--N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 8 TLSVSFNQDH-SCFAVATDTG-FRIYNCDPFKESASRQ-FIDGGFKIVEMLFRS--NYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred eeEEEEccCC-ceEEEEecCc-eEEEecCchhhhhhhc-cccCchhhhhHhhhh--ceEEEecCCCCCCCCCceEEEEec
Confidence 4559999886 6899998887 9999987431111111 111112333344432 2134444443 57999996
Q ss_pred CCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCC-CCCceeeeccCccceEEEEecCCC-CcEEEE-Eec
Q 021121 137 DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR-EMGSTMIIPAHEFEILACDWNKYD-DCLIAS-ASV 213 (317)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~~-~~~ 213 (317)
....++.++. ...+|.++.+.++ .+++. .++.|++|... +.+.++.+.....|---++..|.. ..+||. |-.
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~---riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k 157 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRD---RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFK 157 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCC---eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCc
Confidence 6667777775 6788999999865 44444 46789999987 456666655333222233334423 334443 345
Q ss_pred CCcEEEEEccCCCc-cEEEEecCCCceeEEEecCCCCeeEEeeecCCe-EEEEecccccceeeeee-c-ccceeEeEEEE
Q 021121 214 DKSIKIWDVRNYRV-PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMT-VCLWDFMVEDALVGRYD-H-HTEFAVGVDMS 289 (317)
Q Consensus 214 d~~i~v~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i~vwd~~~~~~~~~~~~-~-~~~~v~~~~~~ 289 (317)
-|.|+|-|+...+. +...+.+|.+.|.|++.+.+|. ++||+|..|+ |||||..+++.+ .+++ + ....|++|+||
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l-~E~RRG~d~A~iy~iaFS 235 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLL-QELRRGVDRADIYCIAFS 235 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEe-eeeecCCchheEEEEEeC
Confidence 68999999987654 3577889999999999999998 8999999998 899999998744 4443 2 24579999999
Q ss_pred eccCCeEEEeecCCcEEEEecCCCC
Q 021121 290 VLVEGLLASTGWDELVYVWQQGMDP 314 (317)
Q Consensus 290 ~~~~~~l~s~~~dg~i~~w~~~~~~ 314 (317)
|+ ..+|+.+|+.|+|+|+.+...+
T Consensus 236 p~-~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 236 PN-SSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred CC-ccEEEEEcCCCeEEEEEeecCC
Confidence 99 8999999999999999997643
No 212
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.83 E-value=8.3e-18 Score=147.50 Aligned_cols=295 Identities=14% Similarity=0.156 Sum_probs=200.0
Q ss_pred eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCc---ceeeeeec-CCCCeeEEEecCCCCCeEEEE
Q 021121 4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPA---LTELVAFD-TADGVYDLAWSESHDSLLIAA 79 (317)
Q Consensus 4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~---~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~ 79 (317)
.+|...+..++.++. .+.++++++. ||+|++|+..+-... ......+. ....+.++.+.+.+ ..+|++
T Consensus 1045 ~Ehs~~v~k~a~s~~-~~s~FvsgS~------DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-~~~Av~ 1116 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSE-HTSLFVSGSD------DGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-DQFAVS 1116 (1431)
T ss_pred hhccccccceeecCC-CCceEEEecC------CceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-CeEEEE
Confidence 346777778888884 3366666665 999999999754322 22333333 67789999999988 589999
Q ss_pred EcCCeEEEEEeCCCCCCCC----ceeeccC-Ccce-EEEEEecCCCC-EEEEEcCCCEEEEEEcCCCceeEEee--cccc
Q 021121 80 VADGSVKIYDTALPPTANP----IRSLHEH-TREV-HSADYNPTRRD-SFITSSWDDTVKLWTVDRPTSVRTFK--EHAY 150 (317)
Q Consensus 80 ~~dg~i~v~~~~~~~~~~~----~~~~~~~-~~~v-~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~ 150 (317)
+.||.|++.+++.-...+. ......+ .+.+ ..-+|...... .++.+..-+.|..||++.......++ ...+
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 9999999999876211111 1111111 2333 33445433333 78888888999999998876555443 3457
Q ss_pred ceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec-cCccceEEEEecCCCC--cEEEEEe--cCCcEEEEEccCC
Q 021121 151 CVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP-AHEFEILACDWNKYDD--CLIASAS--VDKSIKIWDVRNY 225 (317)
Q Consensus 151 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~i~~~~~~~--~~l~~~~--~d~~i~v~d~~~~ 225 (317)
.|++++.+|. ++.++.|+..|.+.+||+|-+.++.... ++..+++.+..+|..+ ...++++ ..+.|.+|++.++
T Consensus 1197 ~vTSi~idp~-~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1197 LVTSIVIDPW-CNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred ceeEEEecCC-ceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 7999999998 8899999999999999999888777654 3456788887777433 4444444 4678999999987
Q ss_pred CccEEEEecC-------------------CCceeEEEecCCCCeeEEeeecCCeEEEEecccccce--------------
Q 021121 226 RVPIAVLNGH-------------------GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL-------------- 272 (317)
Q Consensus 226 ~~~~~~~~~~-------------------~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~-------------- 272 (317)
.. ...+... .-......+...+. ++.+|+.|..|+.||....+..
T Consensus 1276 ~~-~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~-~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~ 1353 (1431)
T KOG1240|consen 1276 LR-QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNG-FLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTN 1353 (1431)
T ss_pred cc-eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCc-eeeecCCccceeeccCCCcccccccccCcccccccc
Confidence 53 2222211 11111223332333 7999999999999997542210
Q ss_pred --------------e---------------------------eeeecccceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121 273 --------------V---------------------------GRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309 (317)
Q Consensus 273 --------------~---------------------------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~ 309 (317)
+ ..-..|..+|++|++......+|++++.||.|++|.
T Consensus 1354 ~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1354 SESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred chhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 0 001246778999998877556999999999999995
No 213
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2e-19 Score=145.31 Aligned_cols=214 Identities=21% Similarity=0.291 Sum_probs=163.3
Q ss_pred ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceee-ccCCcceEEEEEecCC-CCEEEEEcCCCEEEEE
Q 021121 57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSL-HEHTREVHSADYNPTR-RDSFITSSWDDTVKLW 134 (317)
Q Consensus 57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iw 134 (317)
.+|.+.|+|++|+.+| .+|++|+.|-.+.|||.-.. +++..+ .+|...|.++.|-|.. ..++++|..|..|+++
T Consensus 47 ~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~---KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEY---KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred ccccceecceeecCCC-CEEeecCCcceEEeecchhc---ceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 3899999999999999 59999999999999998643 444443 4899999999998853 3378899999999999
Q ss_pred EcCCC----------ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCce----------eeeccCccc
Q 021121 135 TVDRP----------TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST----------MIIPAHEFE 194 (317)
Q Consensus 135 d~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~~~~ 194 (317)
|+... +....+..|...|..++-.|++++.+.++++||+++-+|++....- ..+...--.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 99842 3445567889999999999998899999999999999999974211 111122234
Q ss_pred eEEEEecCCCCcEEEEEecCCcEEEEEccCCCc-----------------cEEEE-ecCC-----------CceeEEEec
Q 021121 195 ILACDWNKYDDCLIASASVDKSIKIWDVRNYRV-----------------PIAVL-NGHG-----------YAVRKVKFS 245 (317)
Q Consensus 195 v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-----------------~~~~~-~~~~-----------~~v~~~~~~ 245 (317)
..|+..+|.+..+|++|+.|-..++||.+.... ++..+ .+|- ..++-+.|+
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn 282 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN 282 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence 678999998899999999999999999542110 11111 1121 125678899
Q ss_pred CCCCeeEEeeecCCeEEEEecccccceeee
Q 021121 246 PHRRNLLASCSYDMTVCLWDFMVEDALVGR 275 (317)
Q Consensus 246 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 275 (317)
|+|..+|++-+.+ .|+++|+...+.+...
T Consensus 283 pNGtElLvs~~gE-hVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 283 PNGTELLVSWGGE-HVYLFDVNEDKSPTPY 311 (758)
T ss_pred CCCcEEEEeeCCe-EEEEEeecCCCCceee
Confidence 9999878776644 6999999887755443
No 214
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.82 E-value=5.8e-18 Score=128.79 Aligned_cols=277 Identities=16% Similarity=0.232 Sum_probs=188.9
Q ss_pred EEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeC
Q 021121 12 SVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTA 91 (317)
Q Consensus 12 ~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~ 91 (317)
-++||| +++++++.. +-++.|-|..+-+ ..+.+.--..|..+.|..+...+|.....++.|.+|++.
T Consensus 13 ~c~fSp--~g~yiAs~~-------~yrlviRd~~tlq----~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~ 79 (447)
T KOG4497|consen 13 FCSFSP--CGNYIASLS-------RYRLVIRDSETLQ----LHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLV 79 (447)
T ss_pred ceeECC--CCCeeeeee-------eeEEEEeccchhh----HHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEee
Confidence 368999 788888887 4478887766533 333333345688899999887778888889999999997
Q ss_pred CCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCC
Q 021121 92 LPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGD 171 (317)
Q Consensus 92 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 171 (317)
.. +-...+.....++.+++|+|+|+++|.+...+-.|.+|.+.+.+... ++..+..+..++|+|+ +++.+.++.-
T Consensus 80 Qp---ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~d-g~f~ai~sRr 154 (447)
T KOG4497|consen 80 QP---EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPD-GQFCAILSRR 154 (447)
T ss_pred cc---eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCC-Cceeeeeecc
Confidence 65 55566677788999999999998889999999999999998765543 3334556788888888 6665544331
Q ss_pred ------------------------------------CeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCC
Q 021121 172 ------------------------------------CTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDK 215 (317)
Q Consensus 172 ------------------------------------g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~ 215 (317)
..+.+||.--.-.+..+ .-.-.+..++|+| .++++++|+.|+
T Consensus 155 DCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY-e~~lG~k~v~wsP-~~qflavGsyD~ 232 (447)
T KOG4497|consen 155 DCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWSP-CNQFLAVGSYDQ 232 (447)
T ss_pred cHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee-eeccceeEEEecc-ccceEEeeccch
Confidence 22334442111111111 1234688899999 999999999999
Q ss_pred cEEEEEccCCCc---------------------------------------------------------c--EEEEe---
Q 021121 216 SIKIWDVRNYRV---------------------------------------------------------P--IAVLN--- 233 (317)
Q Consensus 216 ~i~v~d~~~~~~---------------------------------------------------------~--~~~~~--- 233 (317)
.+|+.+--+.+. + +..++
T Consensus 233 ~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~t 312 (447)
T KOG4497|consen 233 MLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPT 312 (447)
T ss_pred hhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCC
Confidence 998865421110 0 00111
Q ss_pred ---cCCCceeEEEecCCCCeeEEeeecC--CeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEE
Q 021121 234 ---GHGYAVRKVKFSPHRRNLLASCSYD--MTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 308 (317)
Q Consensus 234 ---~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w 308 (317)
.....+.-++|++|.. ++++-... +.+-+||++..+ +... -....+|....|.|. ...|+.+.....+++|
T Consensus 313 D~pnPk~g~g~lafs~Ds~-y~aTrnd~~PnalW~Wdlq~l~-l~av-LiQk~piraf~WdP~-~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 313 DFPNPKCGAGKLAFSCDST-YAATRNDKYPNALWLWDLQNLK-LHAV-LIQKHPIRAFEWDPG-RPRLVVCTGKSRLYFW 388 (447)
T ss_pred CCCCcccccceeeecCCce-EEeeecCCCCceEEEEechhhh-hhhh-hhhccceeEEEeCCC-CceEEEEcCCceEEEE
Confidence 1123566799999987 57765422 568999998876 2222 233567999999998 4455555556679999
Q ss_pred ecCC
Q 021121 309 QQGM 312 (317)
Q Consensus 309 ~~~~ 312 (317)
....
T Consensus 389 ~psg 392 (447)
T KOG4497|consen 389 APSG 392 (447)
T ss_pred cCCC
Confidence 8764
No 215
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.82 E-value=5.6e-20 Score=145.41 Aligned_cols=230 Identities=17% Similarity=0.204 Sum_probs=187.5
Q ss_pred CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce
Q 021121 62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS 141 (317)
Q Consensus 62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 141 (317)
+-..+.++.+| ..|+.|+..|.|..+|..+. .....+. -...|.++.|..+.. +++++ ....++|||- .|..
T Consensus 131 GPY~~~ytrnG-rhlllgGrKGHlAa~Dw~t~---~L~~Ei~-v~Etv~Dv~~LHneq-~~AVA-QK~y~yvYD~-~GtE 202 (545)
T KOG1272|consen 131 GPYHLDYTRNG-RHLLLGGRKGHLAAFDWVTK---KLHFEIN-VMETVRDVTFLHNEQ-FFAVA-QKKYVYVYDN-NGTE 202 (545)
T ss_pred CCeeeeecCCc-cEEEecCCccceeeeecccc---eeeeeee-hhhhhhhhhhhcchH-HHHhh-hhceEEEecC-CCcE
Confidence 56778999998 58888999999999999876 4444433 367889999987765 55554 5689999995 4777
Q ss_pred eEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEE
Q 021121 142 VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWD 221 (317)
Q Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d 221 (317)
++.++.+ ..|..+.|.|. .-+|++++..|.++.-|+..++.+..+..-.+.+..++-+| -...+-+|...|+|.+|.
T Consensus 203 lHClk~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWS 279 (545)
T KOG1272|consen 203 LHCLKRH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWS 279 (545)
T ss_pred Eeehhhc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecC
Confidence 7777754 55999999998 78899999999999999999999999988888899999999 777899999999999999
Q ss_pred ccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeec
Q 021121 222 VRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGW 301 (317)
Q Consensus 222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 301 (317)
.... .++..+..|.++|.++++.++|. +++|.+.|..++|||++.-..+..... ..+...+++|.. -+++.|.
T Consensus 280 P~sk-ePLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~a~~ls~Sqk---glLA~~~ 352 (545)
T KOG1272|consen 280 PNSK-EPLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNFYQLHTYRT--PHPASNLSLSQK---GLLALSY 352 (545)
T ss_pred CCCc-chHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeeccccccceeec--CCCccccccccc---cceeeec
Confidence 8874 46888888999999999999998 799999999999999998874443333 345677888853 3445556
Q ss_pred CCcEEEEe
Q 021121 302 DELVYVWQ 309 (317)
Q Consensus 302 dg~i~~w~ 309 (317)
...|.+|.
T Consensus 353 G~~v~iw~ 360 (545)
T KOG1272|consen 353 GDHVQIWK 360 (545)
T ss_pred CCeeeeeh
Confidence 66789996
No 216
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=3.1e-16 Score=118.79 Aligned_cols=279 Identities=16% Similarity=0.223 Sum_probs=180.7
Q ss_pred ceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC------
Q 021121 9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD------ 82 (317)
Q Consensus 9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------ 82 (317)
...+++|+.+ ..-++++.. .-.+||+.++-..... ....+..-.+..|-|-. +.+.++|+.+
T Consensus 7 ~~lsvs~NQD-~ScFava~~--------~Gfriyn~~P~ke~~~-r~~~~~G~~~veMLfR~--N~laLVGGg~~pky~p 74 (346)
T KOG2111|consen 7 KTLSVSFNQD-HSCFAVATD--------TGFRIYNCDPFKESAS-RQFIDGGFKIVEMLFRS--NYLALVGGGSRPKYPP 74 (346)
T ss_pred ceeEEEEccC-CceEEEEec--------CceEEEecCchhhhhh-hccccCchhhhhHhhhh--ceEEEecCCCCCCCCC
Confidence 4556999996 566676664 4789999987432111 11111112233333332 2344455443
Q ss_pred CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC-CCceeEEeeccccceEEEEEecCC
Q 021121 83 GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD-RPTSVRTFKEHAYCVYNATWNPRH 161 (317)
Q Consensus 83 g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~ 161 (317)
..|.|||=. ...++..+. ...+|.++.+.++ .+++.- ++.|.+|... +.+.++.+.....+=--++..|..
T Consensus 75 NkviIWDD~---k~~~i~el~-f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~ 146 (346)
T KOG2111|consen 75 NKVIIWDDL---KERCIIELS-FNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS 146 (346)
T ss_pred ceEEEEecc---cCcEEEEEE-eccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCC
Confidence 479999932 224554444 5789999999975 455555 5799999987 456666554322221123334432
Q ss_pred CC-eEEE-EeCCCeEEEEeCCCCCc--eeeeccCccceEEEEecCCCCcEEEEEecCCc-EEEEEccCCCccEEEEe-c-
Q 021121 162 SD-VFCS-ASGDCTLRIWDVREMGS--TMIIPAHEFEILACDWNKYDDCLIASASVDKS-IKIWDVRNYRVPIAVLN-G- 234 (317)
Q Consensus 162 ~~-~l~~-~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~~-~- 234 (317)
.. +|+. |-.-|.|++-|+...+. ...+..|.+.|.|++.+. +|.++|+++..|+ |||||..+++. +..++ +
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~-l~E~RRG~ 224 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTL-LQELRRGV 224 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcE-eeeeecCC
Confidence 33 3333 45679999999987655 577889999999999998 9999999999997 89999999875 55443 3
Q ss_pred CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceee-----------------------eeecccceeEeEEEEec
Q 021121 235 HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVG-----------------------RYDHHTEFAVGVDMSVL 291 (317)
Q Consensus 235 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~-----------------------~~~~~~~~v~~~~~~~~ 291 (317)
....|.+++|||+.. +|+++|+-|+++||.++....... .+.-..+...-++|..+
T Consensus 225 d~A~iy~iaFSp~~s-~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~ 303 (346)
T KOG2111|consen 225 DRADIYCIAFSPNSS-WLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSE 303 (346)
T ss_pred chheEEEEEeCCCcc-EEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCC
Confidence 346799999999998 799999999999998876331111 11112334445566654
Q ss_pred cCCeEEEeecCCcEEEEecC
Q 021121 292 VEGLLASTGWDELVYVWQQG 311 (317)
Q Consensus 292 ~~~~l~s~~~dg~i~~w~~~ 311 (317)
.+.++..+.||.-+=+.+.
T Consensus 304 -~nsvi~i~~Dgsy~k~~f~ 322 (346)
T KOG2111|consen 304 -TNTVIAICADGSYYKFKFD 322 (346)
T ss_pred -CCeEEEEEeCCcEEEEEec
Confidence 3566666677866554443
No 217
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=4.9e-17 Score=132.24 Aligned_cols=283 Identities=14% Similarity=0.188 Sum_probs=195.1
Q ss_pred ceecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEE-ecCCCCCeEEEEEc
Q 021121 3 VFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLA-WSESHDSLLIAAVA 81 (317)
Q Consensus 3 ~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~~~~ 81 (317)
-|+++..-+.|..+| +++++.+++.. --.|++||+..-.. +.-. .....+..+. .+-|- ..++.-..
T Consensus 47 dfe~p~ast~ik~s~--DGqY~lAtG~Y-----KP~ikvydlanLSL--KFER--hlDae~V~feiLsDD~-SK~v~L~~ 114 (703)
T KOG2321|consen 47 DFEMPTASTRIKVSP--DGQYLLATGTY-----KPQIKVYDLANLSL--KFER--HLDAEVVDFEILSDDY-SKSVFLQN 114 (703)
T ss_pred hcCCccccceeEecC--CCcEEEEeccc-----CCceEEEEccccee--eeee--cccccceeEEEeccch-hhheEeec
Confidence 366778888999999 56666666543 56899999987542 1111 2233333333 34332 34555556
Q ss_pred CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCC
Q 021121 82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRH 161 (317)
Q Consensus 82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (317)
|.+|.+-..-. .... +. -...-..++++.-...+++.| ....|+-++++.|..+..+....+.++++..++-
T Consensus 115 DR~IefHak~G----~hy~-~R-IP~~GRDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~- 186 (703)
T KOG2321|consen 115 DRTIEFHAKYG----RHYR-TR-IPKFGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEE- 186 (703)
T ss_pred CceeeehhhcC----eeee-ee-cCcCCccccccCCCccEEEee-cCcceEEEEccccccccccccccccceeeeecCc-
Confidence 77776543211 1110 00 112234456654444344444 4568999999999999999888899999999998
Q ss_pred CCeEEEEeCCCeEEEEeCCCCCceeeecc------Cc-----cceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEE
Q 021121 162 SDVFCSASGDCTLRIWDVREMGSTMIIPA------HE-----FEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIA 230 (317)
Q Consensus 162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~-----~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 230 (317)
..+|++|+.+|.|..||.+.......+.. +. ..|+++.|+. ++-.+++|+.+|.+.+||++..+..+.
T Consensus 187 hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~ 265 (703)
T KOG2321|consen 187 HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLV 265 (703)
T ss_pred cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceee
Confidence 78999999999999999998766555432 22 2389999997 799999999999999999999775444
Q ss_pred EEecCCCceeEEEecCCCC-eeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121 231 VLNGHGYAVRKVKFSPHRR-NLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309 (317)
Q Consensus 231 ~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~ 309 (317)
.-.+..-+|..+.|.+.+. .-+++ .....++|||-.+++. ...+... ..+..+|+-|+ ..+++++-.++.+..|=
T Consensus 266 kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~-~asiEpt-~~lND~C~~p~-sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 266 KDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKP-MASIEPT-SDLNDFCFVPG-SGMFFTANESSKMHTYY 341 (703)
T ss_pred cccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCc-eeecccc-CCcCceeeecC-CceEEEecCCCcceeEE
Confidence 4445567899999987632 23544 3467899999998874 4455543 44999999998 77888988887766654
Q ss_pred c
Q 021121 310 Q 310 (317)
Q Consensus 310 ~ 310 (317)
+
T Consensus 342 i 342 (703)
T KOG2321|consen 342 I 342 (703)
T ss_pred c
Confidence 4
No 218
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.79 E-value=5.3e-17 Score=142.58 Aligned_cols=256 Identities=16% Similarity=0.194 Sum_probs=175.8
Q ss_pred eecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCC----CCceeeccCCcceEEEEEecCCCCEEEEEcCCCEE
Q 021121 56 AFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTA----NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTV 131 (317)
Q Consensus 56 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v 131 (317)
...|...+..++.++....++++|+.||+|++|+...-... ....++.....++.++...+.+. .+|.++.||.|
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~-~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD-QFAVSTKDGSV 1122 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC-eEEEEcCCCeE
Confidence 34688888899988876579999999999999998753211 22233444567888999888887 89999999999
Q ss_pred EEEEcCCCc-------eeEEeecc-ccce-EEEEEecCCCC-eEEEEeCCCeEEEEeCCCCCceeeec--cCccceEEEE
Q 021121 132 KLWTVDRPT-------SVRTFKEH-AYCV-YNATWNPRHSD-VFCSASGDCTLRIWDVREMGSTMIIP--AHEFEILACD 199 (317)
Q Consensus 132 ~iwd~~~~~-------~~~~~~~~-~~~v-~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~i~ 199 (317)
.+.+++... +.+....+ .+.+ ..-++...... .++.+..-+.|..||++.......++ ...+.|++++
T Consensus 1123 ~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~ 1202 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIV 1202 (1431)
T ss_pred EEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEE
Confidence 999987621 11111111 2223 33344444344 78888899999999999876655443 3446799999
Q ss_pred ecCCCCcEEEEEecCCcEEEEEccCCCccEEE-EecCCCceeEEEecCCCC--eeEEee-e-cCCeEEEEecccccceee
Q 021121 200 WNKYDDCLIASASVDKSIKIWDVRNYRVPIAV-LNGHGYAVRKVKFSPHRR--NLLASC-S-YDMTVCLWDFMVEDALVG 274 (317)
Q Consensus 200 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~--~~l~~~-~-~d~~i~vwd~~~~~~~~~ 274 (317)
.+| .++++++|+..|.+.+||+|=.. ++.. ..++..+++.+..+|..+ ...+++ + ..+.|.+|++.++.....
T Consensus 1203 idp-~~~WlviGts~G~l~lWDLRF~~-~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~v 1280 (1431)
T KOG1240|consen 1203 IDP-WCNWLVIGTSRGQLVLWDLRFRV-PILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTV 1280 (1431)
T ss_pred ecC-CceEEEEecCCceEEEEEeecCc-eeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEE
Confidence 999 88999999999999999999654 3443 335567888888877544 344444 4 567899999988752211
Q ss_pred eeec------------------ccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCCC
Q 021121 275 RYDH------------------HTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPR 315 (317)
Q Consensus 275 ~~~~------------------~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~ 315 (317)
.... +........+ ++.+..+++|+.|+.|+.||.....+
T Consensus 1281 l~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~-~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1281 LWASDGAPILSYALPSNDARKPDSLAGISCGV-CEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred EEcCCCCcchhhhcccccCCCCCcccceeeec-ccCCceeeecCCccceeeccCCCccc
Confidence 1111 1111111222 22356899999999999999876543
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=5.7e-17 Score=124.86 Aligned_cols=228 Identities=19% Similarity=0.257 Sum_probs=158.9
Q ss_pred CCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeec-cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC
Q 021121 61 DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLH-EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP 139 (317)
Q Consensus 61 ~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 139 (317)
-.+..++|++.- ..++++..|-.|++|+-+. .....++ .....|+|++|-|.+...|+.|+. +-|.+|.....
T Consensus 99 ~dlr~~aWhqH~-~~fava~nddvVriy~kss----t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~t 172 (445)
T KOG2139|consen 99 IDLRGVAWHQHI-IAFAVATNDDVVRIYDKSS----TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRT 172 (445)
T ss_pred cceeeEeechhh-hhhhhhccCcEEEEeccCC----CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcc
Confidence 357889999864 6788999999999999654 2333333 345689999999998878888885 56999976532
Q ss_pred ----ce----------eEEeeccccceEEEEEecCCCCeEEEEe-CCCeEEEEeCCCCCceeeeccCccceEEEEecCCC
Q 021121 140 ----TS----------VRTFKEHAYCVYNATWNPRHSDVFCSAS-GDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYD 204 (317)
Q Consensus 140 ----~~----------~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 204 (317)
.. +....+| .+|++++|+++ +..+++++ .+..|.+||..++..+.......+.+.-+.|+| +
T Consensus 173 ln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~d-gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-d 249 (445)
T KOG2139|consen 173 LNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNED-GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-D 249 (445)
T ss_pred cccccccccccccchhheeCCCC-ceeeEEEEcCC-CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-C
Confidence 11 1112233 67999999999 66666655 577899999998876655544556788999999 9
Q ss_pred CcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccce------------
Q 021121 205 DCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL------------ 272 (317)
Q Consensus 205 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~------------ 272 (317)
+.+|+++.-|+..++|..........-.. ..+.|...+|+|+|+.+|++.+..-. +|.+.-.++.
T Consensus 250 gd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~--lysl~f~~~~~~~~~~~~~k~~ 326 (445)
T KOG2139|consen 250 GDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPR--LYSLTFDGEDSVFLRPQSIKRV 326 (445)
T ss_pred CCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCce--EEEEeecCCCccccCcccceee
Confidence 99999999999999996544332222223 33489999999999988877765544 4443221100
Q ss_pred --ee------eeec---ccceeEeEEEEeccCCeEEEeec
Q 021121 273 --VG------RYDH---HTEFAVGVDMSVLVEGLLASTGW 301 (317)
Q Consensus 273 --~~------~~~~---~~~~v~~~~~~~~~~~~l~s~~~ 301 (317)
+. ...+ -.+.+.+++|.|. +.+|++.-.
T Consensus 327 lliaDL~e~ti~ag~~l~cgeaq~lawDps-GeyLav~fK 365 (445)
T KOG2139|consen 327 LLIADLQEVTICAGQRLCCGEAQCLAWDPS-GEYLAVIFK 365 (445)
T ss_pred eeeccchhhhhhcCcccccCccceeeECCC-CCEEEEEEc
Confidence 00 0001 1356889999999 777777543
No 220
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.79 E-value=1.4e-19 Score=152.68 Aligned_cols=208 Identities=20% Similarity=0.404 Sum_probs=164.2
Q ss_pred CceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEE
Q 021121 98 PIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIW 177 (317)
Q Consensus 98 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~ 177 (317)
.+..+.+|...|+|+.|...|. ++++|+.|..++||.+++..++...++|.+.++.++.+.. ..++++++.|..|++|
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~-n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN-NTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhccCCCCccccchhccchh-hhhhhhcccCceEEEE
Confidence 3445678999999999999998 9999999999999999999999999999999999999987 7889999999999999
Q ss_pred eCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEcc-CCCc----c--------EEEE----------e-
Q 021121 178 DVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR-NYRV----P--------IAVL----------N- 233 (317)
Q Consensus 178 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~-~~~~----~--------~~~~----------~- 233 (317)
.+..+.++..+.+|.+.|++++|+| . .+.+.||++++||.+ .... + ...+ .
T Consensus 260 rl~~~~pvsvLrghtgavtaiafsP-~----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGHTGAVTAIAFSP-R----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred ecCCCchHHHHhccccceeeeccCc-c----ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence 9999999999999999999999999 3 377889999999988 1110 0 0000 0
Q ss_pred -----cCCCceeEEEecCCCC----------eeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEE
Q 021121 234 -----GHGYAVRKVKFSPHRR----------NLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLAS 298 (317)
Q Consensus 234 -----~~~~~v~~~~~~~~~~----------~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 298 (317)
.....+..++|....- .+.+++-.+-.+++|++.++. +...+.+|...+..+.++|-+.....+
T Consensus 335 s~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~-l~H~l~ghsd~~yvLd~Hpfn~ri~ms 413 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ-LLHNLMGHSDEVYVLDVHPFNPRIAMS 413 (1113)
T ss_pred cCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccch-hhhhhcccccceeeeeecCCCcHhhhh
Confidence 0001112222222221 123333345568889988876 567788999999999999987778889
Q ss_pred eecCCcEEEEecCCC
Q 021121 299 TGWDELVYVWQQGMD 313 (317)
Q Consensus 299 ~~~dg~i~~w~~~~~ 313 (317)
++.||...|||+-..
T Consensus 414 ag~dgst~iwdi~eg 428 (1113)
T KOG0644|consen 414 AGYDGSTIIWDIWEG 428 (1113)
T ss_pred ccCCCceEeeecccC
Confidence 999999999998654
No 221
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=4.5e-17 Score=137.82 Aligned_cols=222 Identities=17% Similarity=0.155 Sum_probs=145.7
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
+...+.+.+|||+ ..+++.+.... ++..|++||+..+. ...+.. ..+....++|+|||..++++...+|.+
T Consensus 202 ~~~~v~~p~wSPD-G~~la~~s~~~----~~~~i~i~dl~tg~--~~~l~~--~~g~~~~~~wSPDG~~La~~~~~~g~~ 272 (429)
T PRK01742 202 SSQPLMSPAWSPD-GSKLAYVSFEN----KKSQLVVHDLRSGA--RKVVAS--FRGHNGAPAFSPDGSRLAFASSKDGVL 272 (429)
T ss_pred CCCccccceEcCC-CCEEEEEEecC----CCcEEEEEeCCCCc--eEEEec--CCCccCceeECCCCCEEEEEEecCCcE
Confidence 4557889999995 33444443321 13579999997654 222222 223345789999995344444568877
Q ss_pred EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc-eeEEeeccccceEEEEEecCCCCe
Q 021121 86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT-SVRTFKEHAYCVYNATWNPRHSDV 164 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~ 164 (317)
.||.++... .....+..+...+....|+|+|+.+++++..+|...+|+++... ....+ .+.. ....|+|+ ++.
T Consensus 273 ~Iy~~d~~~--~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpD-G~~ 346 (429)
T PRK01742 273 NIYVMGANG--GTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISAD-GKT 346 (429)
T ss_pred EEEEEECCC--CCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCC-CCE
Confidence 777554321 23344556677788999999998455566667888888775432 22222 3333 45789999 777
Q ss_pred EEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEcc--CCCccEEEEecCCCceeEE
Q 021121 165 FCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR--NYRVPIAVLNGHGYAVRKV 242 (317)
Q Consensus 165 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~--~~~~~~~~~~~~~~~v~~~ 242 (317)
++..+.++ +.+||+.+++........ ...++.|+| ++++|+.++.++.+.+|++. +++ ....+..|.+.+...
T Consensus 347 ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~-~~~~l~~~~g~~~~p 421 (429)
T PRK01742 347 LVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISP-NGIMIIYSSTQGLGKVLQLVSADGR-FKARLPGSDGQVKFP 421 (429)
T ss_pred EEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECC-CCCEEEEEEcCCCceEEEEEECCCC-ceEEccCCCCCCCCc
Confidence 77776655 566999887654322222 235678999 99999999999988888764 333 466777788888999
Q ss_pred EecCC
Q 021121 243 KFSPH 247 (317)
Q Consensus 243 ~~~~~ 247 (317)
+|+|-
T Consensus 422 ~wsp~ 426 (429)
T PRK01742 422 AWSPY 426 (429)
T ss_pred ccCCC
Confidence 99985
No 222
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=2.4e-16 Score=133.66 Aligned_cols=236 Identities=14% Similarity=0.070 Sum_probs=151.4
Q ss_pred ceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEc---CCeEEEEEeCCCCCCCCceeeccCCcceEEEE
Q 021121 37 GRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVA---DGSVKIYDTALPPTANPIRSLHEHTREVHSAD 113 (317)
Q Consensus 37 g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (317)
..|.+||..... ...+ ..+...+...+|+|+++ .|+..+. ...|.+|++..+ .. ..+....+...+..
T Consensus 184 ~~l~i~D~~g~~--~~~l--t~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g---~~-~~l~~~~g~~~~~~ 254 (433)
T PRK04922 184 YALQVADSDGYN--PQTI--LRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATG---QR-ELVASFRGINGAPS 254 (433)
T ss_pred EEEEEECCCCCC--ceEe--ecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCC---CE-EEeccCCCCccCce
Confidence 468899886543 2222 24667799999999985 6665553 346999998764 21 22333344556789
Q ss_pred EecCCCCEEEEEcCCC--EEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEe-CCCe--EEEEeCCCCCceeee
Q 021121 114 YNPTRRDSFITSSWDD--TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSAS-GDCT--LRIWDVREMGSTMII 188 (317)
Q Consensus 114 ~~~~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~~~~~~~~ 188 (317)
|+|+|+.++++.+.+| .|++||+.+++.. .+..+.......+|+|+ ++.++.++ .+|. |+++|+.+++.. .+
T Consensus 255 ~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spD-G~~l~f~sd~~g~~~iy~~dl~~g~~~-~l 331 (433)
T PRK04922 255 FSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPD-GKSIYFTSDRGGRPQIYRVAASGGSAE-RL 331 (433)
T ss_pred ECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCC-CCEEEEEECCCCCceEEEEECCCCCeE-Ee
Confidence 9999985555666555 6999999887643 44445555677899999 66555544 4554 677777665533 23
Q ss_pred ccCccceEEEEecCCCCcEEEEEecCC---cEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecC--CeEEE
Q 021121 189 PAHEFEILACDWNKYDDCLIASASVDK---SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYD--MTVCL 263 (317)
Q Consensus 189 ~~~~~~v~~i~~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~v 263 (317)
..........+|+| +++.++..+.++ .|.+||+.+++. ..+. +........|+|+|+.++++.... +.|.+
T Consensus 332 t~~g~~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~g~~--~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~ 407 (433)
T PRK04922 332 TFQGNYNARASVSP-DGKKIAMVHGSGGQYRIAVMDLSTGSV--RTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAA 407 (433)
T ss_pred ecCCCCccCEEECC-CCCEEEEEECCCCceeEEEEECCCCCe--EECC-CCCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence 22333445789999 888887765443 599999977653 3333 333455779999999645444433 34777
Q ss_pred EecccccceeeeeecccceeEeEEEEe
Q 021121 264 WDFMVEDALVGRYDHHTEFAVGVDMSV 290 (317)
Q Consensus 264 wd~~~~~~~~~~~~~~~~~v~~~~~~~ 290 (317)
+++... ....+..+.+.+...+|+|
T Consensus 408 ~~~~g~--~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 408 VSTDGR--VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred EECCCC--ceEEcccCCCCCCCCccCC
Confidence 776443 3445555556677788876
No 223
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.77 E-value=1.5e-17 Score=134.07 Aligned_cols=163 Identities=18% Similarity=0.331 Sum_probs=131.2
Q ss_pred CceEEEEecCCCCCcceee---eeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCC------------------
Q 021121 36 NGRVHVLDLSPAAPALTEL---VAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPP------------------ 94 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~------------------ 94 (317)
.|.|++.|..... ...+ ...-.+..|+|++|-|-++.+++++-.+|.+.+||.....
T Consensus 194 tGqvq~idp~~~~--~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i 271 (636)
T KOG2394|consen 194 TGQVQLIDPINFE--VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAI 271 (636)
T ss_pred cCceEEecchhhH--HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEE
Confidence 6788888865522 1111 1112346899999999888899999999999999764320
Q ss_pred -------CCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEE
Q 021121 95 -------TANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCS 167 (317)
Q Consensus 95 -------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 167 (317)
...++..+.--.+.|..++|+|||+ +||+.+.||.++|||..+.+.+..++..-+...|++|+|| ++++++
T Consensus 272 ~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPD-GKyIvt 349 (636)
T KOG2394|consen 272 LTSKSKKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPD-GKYIVT 349 (636)
T ss_pred eeeeccccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCC-ccEEEe
Confidence 0012222222345789999999998 9999999999999999998888888777788999999999 999999
Q ss_pred EeCCCeEEEEeCCCCCceeeeccCccceEEEEecC
Q 021121 168 ASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNK 202 (317)
Q Consensus 168 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 202 (317)
|++|-.|.||.+...+.+..-++|++.|..++|+|
T Consensus 350 GGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 350 GGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 99999999999999999999999999999999997
No 224
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.77 E-value=2.1e-14 Score=118.10 Aligned_cols=274 Identities=14% Similarity=0.132 Sum_probs=176.8
Q ss_pred CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEc----CCeEEEEEeCCC-CCCCCceeeccCCcceE
Q 021121 36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVA----DGSVKIYDTALP-PTANPIRSLHEHTREVH 110 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~v~~~~~~-~~~~~~~~~~~~~~~v~ 110 (317)
.+.|++|+++.....+..+...........++++|++ .+|.+... +|.|..|++... .....+...........
T Consensus 12 ~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~-~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~ 90 (345)
T PF10282_consen 12 GGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDG-RRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC 90 (345)
T ss_dssp STEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTS-SEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE
T ss_pred CCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCC-CEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE
Confidence 3799999997666667666665566677889999998 57777665 579999998864 23334444443445566
Q ss_pred EEEEecCCCCEEEEEcCCCEEEEEEcCCC-ceeEE---ee----------ccccceEEEEEecCCCCeEEE-EeCCCeEE
Q 021121 111 SADYNPTRRDSFITSSWDDTVKLWTVDRP-TSVRT---FK----------EHAYCVYNATWNPRHSDVFCS-ASGDCTLR 175 (317)
Q Consensus 111 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~---~~----------~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~ 175 (317)
.++++|+++.++++...+|.|.++++... ..... +. .......++.++|+ ++++++ .-....|.
T Consensus 91 ~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd-g~~v~v~dlG~D~v~ 169 (345)
T PF10282_consen 91 HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD-GRFVYVPDLGADRVY 169 (345)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT-SSEEEEEETTTTEEE
T ss_pred EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCC-CCEEEEEecCCCEEE
Confidence 79999999844444456999999999874 22221 11 11245789999999 555544 44456899
Q ss_pred EEeCCCCCc-ee---ee-ccCccceEEEEecCCCCcEEE-EEecCCcEEEEEccCCCccE---EEEecC------CCcee
Q 021121 176 IWDVREMGS-TM---II-PAHEFEILACDWNKYDDCLIA-SASVDKSIKIWDVRNYRVPI---AVLNGH------GYAVR 240 (317)
Q Consensus 176 i~d~~~~~~-~~---~~-~~~~~~v~~i~~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~---~~~~~~------~~~v~ 240 (317)
+|++..... +. .+ .......+.++|+| +++++. +...++.|.+|++....-.+ ...... .....
T Consensus 170 ~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 248 (345)
T PF10282_consen 170 VYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPA 248 (345)
T ss_dssp EEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEE
T ss_pred EEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCce
Confidence 999977652 21 12 13445678999999 766654 45567789999998322112 112111 12567
Q ss_pred EEEecCCCCeeEEeeecCCeEEEEecccc--c-ceeeeeecccceeEeEEEEeccCCeEEEe-ecCCcEEEEecCCC
Q 021121 241 KVKFSPHRRNLLASCSYDMTVCLWDFMVE--D-ALVGRYDHHTEFAVGVDMSVLVEGLLAST-GWDELVYVWQQGMD 313 (317)
Q Consensus 241 ~~~~~~~~~~~l~~~~~d~~i~vwd~~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~dg~i~~w~~~~~ 313 (317)
.|+++|++++++++.-..+.|.+|++... . ..+..........+.++++|+ +++|+++ ..++.|.+|+++..
T Consensus 249 ~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~-g~~l~Va~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 249 EIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPD-GRYLYVANQDSNTVSVFDIDPD 324 (345)
T ss_dssp EEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TT-SSEEEEEETTTTEEEEEEEETT
T ss_pred eEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCC-CCEEEEEecCCCeEEEEEEeCC
Confidence 89999999976666667889999999432 2 222333333445789999999 5665555 47889999998643
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=1.6e-15 Score=128.15 Aligned_cols=235 Identities=13% Similarity=0.068 Sum_probs=151.2
Q ss_pred ceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEE---cCCeEEEEEeCCCCCCCCceeeccCCcceEEEE
Q 021121 37 GRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAV---ADGSVKIYDTALPPTANPIRSLHEHTREVHSAD 113 (317)
Q Consensus 37 g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (317)
..|.++|.+..+ .+.+. .+...+...+|+|||+ .|+..+ .+..|.+|++..++ .+.+..+ .+.+....
T Consensus 179 ~~l~~~d~dg~~--~~~lt--~~~~~~~~p~wSPDG~-~la~~s~~~g~~~i~i~dl~~G~-~~~l~~~---~~~~~~~~ 249 (429)
T PRK03629 179 YELRVSDYDGYN--QFVVH--RSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGA-VRQVASF---PRHNGAPA 249 (429)
T ss_pred eeEEEEcCCCCC--CEEee--cCCCceeeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCC-eEEccCC---CCCcCCeE
Confidence 378888887654 22232 4566899999999995 555433 23568889987541 1222222 33345689
Q ss_pred EecCCCCEEEEEcCCC--EEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeC-CCe--EEEEeCCCCCceeee
Q 021121 114 YNPTRRDSFITSSWDD--TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASG-DCT--LRIWDVREMGSTMII 188 (317)
Q Consensus 114 ~~~~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~ 188 (317)
|+|+|+.++++.+.+| .|.+||+++++..+ +..+...+....|+|+ ++.|+..+. ++. |+++|+.+++. ..+
T Consensus 250 ~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPD-G~~I~f~s~~~g~~~Iy~~d~~~g~~-~~l 326 (429)
T PRK03629 250 FSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPD-SQNLAYTSDQAGRPQVYKVNINGGAP-QRI 326 (429)
T ss_pred ECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCC-CCEEEEEeCCCCCceEEEEECCCCCe-EEe
Confidence 9999984444545555 58999998876544 3334456788999999 666655554 444 55557665543 333
Q ss_pred ccCccceEEEEecCCCCcEEEEEecC---CcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCe---EE
Q 021121 189 PAHEFEILACDWNKYDDCLIASASVD---KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMT---VC 262 (317)
Q Consensus 189 ~~~~~~v~~i~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~---i~ 262 (317)
...........|+| +++.++..+.+ ..|.+||+.+++ ...+... .......|+|+|+. |+.++.++. +.
T Consensus 327 t~~~~~~~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g~--~~~Lt~~-~~~~~p~~SpDG~~-i~~~s~~~~~~~l~ 401 (429)
T PRK03629 327 TWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGG--VQVLTDT-FLDETPSIAPNGTM-VIYSSSQGMGSVLN 401 (429)
T ss_pred ecCCCCccCEEECC-CCCEEEEEEccCCCceEEEEECCCCC--eEEeCCC-CCCCCceECCCCCE-EEEEEcCCCceEEE
Confidence 33344456789999 88888776543 358889988765 3333322 23456789999995 666665553 66
Q ss_pred EEecccccceeeeeecccceeEeEEEEe
Q 021121 263 LWDFMVEDALVGRYDHHTEFAVGVDMSV 290 (317)
Q Consensus 263 vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 290 (317)
++++... ....+..|.+.+...+|+|
T Consensus 402 ~~~~~G~--~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 402 LVSTDGR--FKARLPATDGQVKFPAWSP 427 (429)
T ss_pred EEECCCC--CeEECccCCCCcCCcccCC
Confidence 6776433 3455667778888999987
No 226
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=5.1e-16 Score=131.24 Aligned_cols=237 Identities=13% Similarity=0.109 Sum_probs=146.8
Q ss_pred ceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEc-C--CeEEEEEeCCCCCCCCceeeccCCcceEEEE
Q 021121 37 GRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVA-D--GSVKIYDTALPPTANPIRSLHEHTREVHSAD 113 (317)
Q Consensus 37 g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d--g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (317)
..|.++|.+... ...+ ..+...+.+.+|+|+|. .|+..+. + ..|.+||+..+ +. ..+....+.+....
T Consensus 176 ~~L~~~D~dG~~--~~~l--~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g---~~-~~l~~~~g~~~~~~ 246 (427)
T PRK02889 176 YQLQISDADGQN--AQSA--LSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATG---RR-RVVANFKGSNSAPA 246 (427)
T ss_pred cEEEEECCCCCC--ceEe--ccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCC---CE-EEeecCCCCccceE
Confidence 467777764433 2222 25667889999999985 6665543 2 45999998765 22 22333345566889
Q ss_pred EecCCCCEEEEEcCCCEEEEEE--cCCCceeEEeeccccceEEEEEecCCCCeEE-EEeCCCeEEEEeC--CCCCceeee
Q 021121 114 YNPTRRDSFITSSWDDTVKLWT--VDRPTSVRTFKEHAYCVYNATWNPRHSDVFC-SASGDCTLRIWDV--REMGSTMII 188 (317)
Q Consensus 114 ~~~~~~~~l~~~~~dg~v~iwd--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~d~--~~~~~~~~~ 188 (317)
|+|+|+.++++.+.+|...+|. +.++. ...+..+........|+|+ ++.++ ++..+|...+|.+ .+++. ..+
T Consensus 247 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpD-G~~l~f~s~~~g~~~Iy~~~~~~g~~-~~l 323 (427)
T PRK02889 247 WSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPD-GRSIYFTSDRGGAPQIYRMPASGGAA-QRV 323 (427)
T ss_pred ECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCC-CCEEEEEecCCCCcEEEEEECCCCce-EEE
Confidence 9999984555677788766665 44443 4455545555677899999 55555 4444566666654 44432 222
Q ss_pred ccCccceEEEEecCCCCcEEEEEecCC---cEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCe--EEE
Q 021121 189 PAHEFEILACDWNKYDDCLIASASVDK---SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMT--VCL 263 (317)
Q Consensus 189 ~~~~~~v~~i~~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--i~v 263 (317)
...........|+| +++.++..+.++ .|.+||+.+++. ..+... .......|+|+++.++++....|. +.+
T Consensus 324 t~~g~~~~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~g~~--~~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~ 399 (427)
T PRK02889 324 TFTGSYNTSPRISP-DGKLLAYISRVGGAFKLYVQDLATGQV--TALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAA 399 (427)
T ss_pred ecCCCCcCceEECC-CCCEEEEEEccCCcEEEEEEECCCCCe--EEccCC-CCccCceECCCCCEEEEEEecCCCEEEEE
Confidence 22223345678999 898888776554 599999987653 333322 234678999999965555544444 444
Q ss_pred EecccccceeeeeecccceeEeEEEEec
Q 021121 264 WDFMVEDALVGRYDHHTEFAVGVDMSVL 291 (317)
Q Consensus 264 wd~~~~~~~~~~~~~~~~~v~~~~~~~~ 291 (317)
.++. + .....+..+.+.+...+|+|-
T Consensus 400 ~~~~-g-~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 400 VSSD-G-RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EECC-C-CceEEeecCCCCCCCCccCCC
Confidence 4553 2 234455556667788888873
No 227
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.76 E-value=2.1e-15 Score=115.09 Aligned_cols=275 Identities=13% Similarity=0.188 Sum_probs=180.4
Q ss_pred cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEE
Q 021121 8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKI 87 (317)
Q Consensus 8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 87 (317)
+.|.-+.|..+ .-.++++... ++.|.+|++...+- ... .-....++..++|+|+|..+|.+...+-+|.+
T Consensus 49 dki~yieW~ad-s~~ilC~~yk------~~~vqvwsl~Qpew--~ck-Ideg~agls~~~WSPdgrhiL~tseF~lriTV 118 (447)
T KOG4497|consen 49 DKIVYIEWKAD-SCHILCVAYK------DPKVQVWSLVQPEW--YCK-IDEGQAGLSSISWSPDGRHILLTSEFDLRITV 118 (447)
T ss_pred HHhhheeeecc-ceeeeeeeec------cceEEEEEeeccee--EEE-eccCCCcceeeeECCCcceEeeeecceeEEEE
Confidence 44566888885 3344444454 89999999986652 111 11466789999999999889999999999999
Q ss_pred EEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcC-C-----------------------------------CEE
Q 021121 88 YDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW-D-----------------------------------DTV 131 (317)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d-----------------------------------g~v 131 (317)
|.+.+. ....++-.+..+..++|+|+|+ +.+.++. | ..+
T Consensus 119 WSL~t~----~~~~~~~pK~~~kg~~f~~dg~-f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~l 193 (447)
T KOG4497|consen 119 WSLNTQ----KGYLLPHPKTNVKGYAFHPDGQ-FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWL 193 (447)
T ss_pred EEeccc----eeEEecccccCceeEEECCCCc-eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEE
Confidence 999864 2222333345567888999887 5444432 1 234
Q ss_pred EEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc---------------------------
Q 021121 132 KLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS--------------------------- 184 (317)
Q Consensus 132 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------------------------- 184 (317)
.+||---.-.+..+. ..-.+..++|+|. ++++++|+.|+.+|+.+--+-+.
T Consensus 194 aVwd~~Leykv~aYe-~~lG~k~v~wsP~-~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~q 271 (447)
T KOG4497|consen 194 AVWDNVLEYKVYAYE-RGLGLKFVEWSPC-NQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQ 271 (447)
T ss_pred EEecchhhheeeeee-eccceeEEEeccc-cceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhh
Confidence 444422111111221 2245889999998 89999999999998865321000
Q ss_pred ---------------------------------eee------eccCccceEEEEecCCCCcEEEEEecC--CcEEEEEcc
Q 021121 185 ---------------------------------TMI------IPAHEFEILACDWNKYDDCLIASASVD--KSIKIWDVR 223 (317)
Q Consensus 185 ---------------------------------~~~------~~~~~~~v~~i~~~~~~~~~l~~~~~d--~~i~v~d~~ 223 (317)
+.. +......+.-++|++ +..++++-... +.+-+||++
T Consensus 272 l~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~~PnalW~Wdlq 350 (447)
T KOG4497|consen 272 LLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRNDKYPNALWLWDLQ 350 (447)
T ss_pred hcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-CceEEeeecCCCCceEEEEech
Confidence 000 011122466789999 88888876432 468999999
Q ss_pred CCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCC
Q 021121 224 NYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDE 303 (317)
Q Consensus 224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 303 (317)
..+ +........+|....|+|...+ |+.+.....+.+|...... .+ ......-.|..++|.-. +..++-.+.|.
T Consensus 351 ~l~--l~avLiQk~piraf~WdP~~pr-L~vctg~srLY~W~psg~~-~V-~vP~~GF~i~~l~W~~~-g~~i~l~~kDa 424 (447)
T KOG4497|consen 351 NLK--LHAVLIQKHPIRAFEWDPGRPR-LVVCTGKSRLYFWAPSGPR-VV-GVPKKGFNIQKLQWLQP-GEFIVLCGKDA 424 (447)
T ss_pred hhh--hhhhhhhccceeEEEeCCCCce-EEEEcCCceEEEEcCCCce-EE-ecCCCCceeeeEEecCC-CcEEEEEcCCc
Confidence 865 3333345668999999999986 4444445669999876543 22 22333467999999988 77888888886
Q ss_pred cEE
Q 021121 304 LVY 306 (317)
Q Consensus 304 ~i~ 306 (317)
...
T Consensus 425 fc~ 427 (447)
T KOG4497|consen 425 FCV 427 (447)
T ss_pred eEE
Confidence 443
No 228
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.76 E-value=2.2e-14 Score=117.86 Aligned_cols=276 Identities=14% Similarity=0.096 Sum_probs=166.1
Q ss_pred CCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCe-eEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCC
Q 021121 20 ESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGV-YDLAWSESHDSLLIAAVADGSVKIYDTALPPTANP 98 (317)
Q Consensus 20 ~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~ 98 (317)
.+.++++... +|.|.+.|..+.+ .+..+.....+ ..+.|+||+ +++++.+.||.|.++|+.+. +.
T Consensus 5 ~~l~~V~~~~------~~~v~viD~~t~~----~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~---~~ 70 (369)
T PF02239_consen 5 GNLFYVVERG------SGSVAVIDGATNK----VVARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATG---KV 70 (369)
T ss_dssp GGEEEEEEGG------GTEEEEEETTT-S----EEEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSS---SE
T ss_pred ccEEEEEecC------CCEEEEEECCCCe----EEEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCcc---cE
Confidence 3455555554 8999999988754 34444443344 457899998 57888889999999999876 56
Q ss_pred ceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecc-------ccceEEEEEecCCCCeEEEEeCC
Q 021121 99 IRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEH-------AYCVYNATWNPRHSDVFCSASGD 171 (317)
Q Consensus 99 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~~d 171 (317)
+..+.. .....+++++++|+..+++...++.+.++|.++.+.++.+... ..++..+..+|....++++.-+.
T Consensus 71 v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~ 149 (369)
T PF02239_consen 71 VATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT 149 (369)
T ss_dssp EEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT
T ss_pred EEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccC
Confidence 666654 4456889999999944445557899999999999998887532 34677888888833344445556
Q ss_pred CeEEEEeCCCCCcee-eeccCccceEEEEecCCCCcEEEEE-ecCCcEEEEEccCCCcc---------------------
Q 021121 172 CTLRIWDVREMGSTM-IIPAHEFEILACDWNKYDDCLIASA-SVDKSIKIWDVRNYRVP--------------------- 228 (317)
Q Consensus 172 g~i~i~d~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~--------------------- 228 (317)
+.|.+.|....+.+. .............|+| ++++++++ ..+..|.++|.++.+..
T Consensus 150 ~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~ 228 (369)
T PF02239_consen 150 GEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPG 228 (369)
T ss_dssp TEEEEEETTTSSCEEEEEEE--TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETT
T ss_pred CeEEEEEeccccccceeeecccccccccccCc-ccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCC
Confidence 889898987765443 2222344567889999 88776554 45567778877654321
Q ss_pred ---------------------------------EEEEecCCCceeEEEecCCCCeeEEee----ecCCeEEEEecccccc
Q 021121 229 ---------------------------------IAVLNGHGYAVRKVKFSPHRRNLLASC----SYDMTVCLWDFMVEDA 271 (317)
Q Consensus 229 ---------------------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~----~~d~~i~vwd~~~~~~ 271 (317)
+..+.....+ .-+.-+|++++ +.+. ...+.|.++|.++.+
T Consensus 229 ~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~-vwvd~~~~~~~~~v~viD~~tl~- 305 (369)
T PF02239_consen 229 FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRY-VWVDTFLNPDADTVQVIDKKTLK- 305 (369)
T ss_dssp TEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SE-EEEE-TT-SSHT-EEEEECCGTE-
T ss_pred cceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCcc-EEeeccCCCCCceEEEEECcCcc-
Confidence 1111111222 34667899985 5544 556899999999886
Q ss_pred eeeeeec-ccceeEeEEEEeccCCeEEEeecCC-cEEEEecCCCC
Q 021121 272 LVGRYDH-HTEFAVGVDMSVLVEGLLASTGWDE-LVYVWQQGMDP 314 (317)
Q Consensus 272 ~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg-~i~~w~~~~~~ 314 (317)
....+.. ....+..+.|++++....+|.-.++ .|.+||..+-+
T Consensus 306 ~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 306 VVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLK 350 (369)
T ss_dssp EEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred eeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcE
Confidence 3344432 2335899999999554555544444 89999987643
No 229
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.75 E-value=3.9e-16 Score=119.55 Aligned_cols=250 Identities=17% Similarity=0.311 Sum_probs=176.3
Q ss_pred CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCC--------------cceeeeeecCCCCeeEEEecCCC
Q 021121 7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAP--------------ALTELVAFDTADGVYDLAWSESH 72 (317)
Q Consensus 7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~ 72 (317)
.+-+.++.|.. .|.+++++.. +|+|.+|.-..... .+.-+......+.|..+.|.+++
T Consensus 25 adiis~vef~~--~Ge~LatGdk------gGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~ 96 (433)
T KOG1354|consen 25 ADIISAVEFDH--YGERLATGDK------GGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDG 96 (433)
T ss_pred hcceeeEEeec--ccceEeecCC------CCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCC
Confidence 45678899998 6777787775 89999998765432 11111222345679999999875
Q ss_pred C-CeEEEEEcCCeEEEEEeCCCCCCC--------------------------------Ccee-eccCCcceEEEEEecCC
Q 021121 73 D-SLLIAAVADGSVKIYDTALPPTAN--------------------------------PIRS-LHEHTREVHSADYNPTR 118 (317)
Q Consensus 73 ~-~~l~~~~~dg~i~v~~~~~~~~~~--------------------------------~~~~-~~~~~~~v~~~~~~~~~ 118 (317)
+ ..++..+.|.+|++|.+......+ +.+. -..|.--|+++.++.|+
T Consensus 97 n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~ 176 (433)
T KOG1354|consen 97 NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK 176 (433)
T ss_pred CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc
Confidence 3 456777889999999987542111 0011 13577789999999998
Q ss_pred CCEEEEEcCCCEEEEEEcCCCceeEE---eec-----cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCce----e
Q 021121 119 RDSFITSSWDDTVKLWTVDRPTSVRT---FKE-----HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST----M 186 (317)
Q Consensus 119 ~~~l~~~~~dg~v~iwd~~~~~~~~~---~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~ 186 (317)
. .++++. |=.|.+|+++-...... ++. -..-|++..|+|...++++-.+..|+|++.|+|....- .
T Consensus 177 E-t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 177 E-TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred c-eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh
Confidence 7 666655 78999999875432222 222 23458899999998999999999999999999953211 1
Q ss_pred ee------------ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCC---------------ce
Q 021121 187 II------------PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGY---------------AV 239 (317)
Q Consensus 187 ~~------------~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~---------------~v 239 (317)
.+ ..--..|..+.|++ +|+++++-. --+|++||+.....++.+..-|.. .-
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~-sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdK 332 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSH-SGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDK 332 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEcc-CCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhe
Confidence 11 11123578899999 999998754 368999999877777887776642 12
Q ss_pred eEEEecCCCCeeEEeeecCCeEEEEecccc
Q 021121 240 RKVKFSPHRRNLLASCSYDMTVCLWDFMVE 269 (317)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~ 269 (317)
..++|+-++. .++||+..+.+++++...+
T Consensus 333 Fec~~sg~~~-~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 333 FECSWSGNDS-YVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred eEEEEcCCcc-eEecccccceEEEecCCCC
Confidence 4678998888 6999999999999995443
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=4.2e-15 Score=126.27 Aligned_cols=235 Identities=13% Similarity=0.104 Sum_probs=153.1
Q ss_pred ceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEc---CCeEEEEEeCCCCCCCCceeeccCCcceEEEE
Q 021121 37 GRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVA---DGSVKIYDTALPPTANPIRSLHEHTREVHSAD 113 (317)
Q Consensus 37 g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (317)
..|.++|.+... .+.+. .+...+...+|+|||+ .|+..+. +..|.+||+..+ . ...+..+.+.+....
T Consensus 182 ~~l~~~d~dg~~--~~~lt--~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g---~-~~~l~~~~g~~~~~~ 252 (435)
T PRK05137 182 KRLAIMDQDGAN--VRYLT--DGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETG---Q-RELVGNFPGMTFAPR 252 (435)
T ss_pred eEEEEECCCCCC--cEEEe--cCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCC---c-EEEeecCCCcccCcE
Confidence 378888876543 22232 5677899999999985 5555543 468999998765 2 233445566778899
Q ss_pred EecCCCCEEEEEcCCCE--EEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEe-CCC--eEEEEeCCCCCceeee
Q 021121 114 YNPTRRDSFITSSWDDT--VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSAS-GDC--TLRIWDVREMGSTMII 188 (317)
Q Consensus 114 ~~~~~~~~l~~~~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~ 188 (317)
|+|+|+.++++.+.++. |.+||+++++. ..+..+........|+|+ ++.++..+ .+| .|+++|+..++. ..+
T Consensus 253 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spD-G~~i~f~s~~~g~~~Iy~~d~~g~~~-~~l 329 (435)
T PRK05137 253 FSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPD-GSQIVFESDRSGSPQLYVMNADGSNP-RRI 329 (435)
T ss_pred ECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCC-CCEEEEEECCCCCCeEEEEECCCCCe-EEe
Confidence 99999855566666654 77779887755 445555566778999999 66555554 333 688889876544 334
Q ss_pred ccCccceEEEEecCCCCcEEEEEecC---CcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecC-----Ce
Q 021121 189 PAHEFEILACDWNKYDDCLIASASVD---KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYD-----MT 260 (317)
Q Consensus 189 ~~~~~~v~~i~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~ 260 (317)
......+....|+| +++.|+....+ ..|.+||+.... ...+. ....+....|+|+|+.++++.... ..
T Consensus 330 t~~~~~~~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d~~~~~--~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~ 405 (435)
T PRK05137 330 SFGGGRYSTPVWSP-RGDLIAFTKQGGGQFSIGVMKPDGSG--ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPK 405 (435)
T ss_pred ecCCCcccCeEECC-CCCEEEEEEcCCCceEEEEEECCCCc--eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcce
Confidence 33445566788999 88888776543 358888875543 23332 223467889999999655544433 25
Q ss_pred EEEEecccccceeeeeecccceeEeEEEEe
Q 021121 261 VCLWDFMVEDALVGRYDHHTEFAVGVDMSV 290 (317)
Q Consensus 261 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 290 (317)
+.++|+..+.. ..+. ..+.+...+|+|
T Consensus 406 L~~~dl~g~~~--~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 406 LYTVDLTGRNE--REVP-TPGDASDPAWSP 432 (435)
T ss_pred EEEEECCCCce--EEcc-CCCCccCcccCC
Confidence 77778765542 2333 234466677776
No 231
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=4e-16 Score=127.05 Aligned_cols=247 Identities=14% Similarity=0.146 Sum_probs=176.9
Q ss_pred eeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccC-CcceEE-EEEecCCCCEEEEEcCCCE
Q 021121 53 ELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEH-TREVHS-ADYNPTRRDSFITSSWDDT 130 (317)
Q Consensus 53 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~-~~~v~~-~~~~~~~~~~l~~~~~dg~ 130 (317)
.++.++++..-+.|..+|||..++++|...-.|++||+..- ...+..| .+.+.. .-.+.|-. .++--..|.+
T Consensus 44 LiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanL-----SLKFERhlDae~V~feiLsDD~S-K~v~L~~DR~ 117 (703)
T KOG2321|consen 44 LIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANL-----SLKFERHLDAEVVDFEILSDDYS-KSVFLQNDRT 117 (703)
T ss_pred HHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccc-----eeeeeecccccceeEEEeccchh-hheEeecCce
Confidence 34456788889999999999999999999999999999753 2223323 233333 33344433 4555556777
Q ss_pred EEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEE
Q 021121 131 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIAS 210 (317)
Q Consensus 131 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~ 210 (317)
|.+...- |.. ..++ -...-..++++.-...++ .++....|+-+++++|.-+..+......++++..++ ...+|++
T Consensus 118 IefHak~-G~h-y~~R-IP~~GRDm~y~~~scDly-~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~ 192 (703)
T KOG2321|consen 118 IEFHAKY-GRH-YRTR-IPKFGRDMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLAC 192 (703)
T ss_pred eeehhhc-Cee-eeee-cCcCCccccccCCCccEE-EeecCcceEEEEccccccccccccccccceeeeecC-ccceEEe
Confidence 7664322 211 1111 122345566665535555 445556799999999999998888888999999999 8889999
Q ss_pred EecCCcEEEEEccCCCccEEEEe------cCCC-----ceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecc
Q 021121 211 ASVDKSIKIWDVRNYRVPIAVLN------GHGY-----AVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH 279 (317)
Q Consensus 211 ~~~d~~i~v~d~~~~~~~~~~~~------~~~~-----~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 279 (317)
|+.+|.+..||.+.... +..+. .|.+ .|+++.|+.+|- -+++|..+|.+.|||+++.++++..-.+.
T Consensus 193 Gt~~g~VEfwDpR~ksr-v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~~pl~~kdh~~ 270 (703)
T KOG2321|consen 193 GTEDGVVEFWDPRDKSR-VGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRASKPLLVKDHGY 270 (703)
T ss_pred cccCceEEEecchhhhh-heeeecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccCCceeecccCC
Confidence 99999999999998553 33332 2332 499999998887 49999999999999999998777666666
Q ss_pred cceeEeEEEEeccCC-eEEEeecCCcEEEEecCCC
Q 021121 280 TEFAVGVDMSVLVEG-LLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 280 ~~~v~~~~~~~~~~~-~l~s~~~dg~i~~w~~~~~ 313 (317)
..+|..+.|.+.++. .++|. ....++|||-.++
T Consensus 271 e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G 304 (703)
T KOG2321|consen 271 ELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTG 304 (703)
T ss_pred ccceeeecccccCCCceEEec-chHHhhhcccccC
Confidence 779999999776333 45554 5678999997664
No 232
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=2.5e-16 Score=131.88 Aligned_cols=298 Identities=17% Similarity=0.255 Sum_probs=214.4
Q ss_pred eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCC-CeEEEEEcC
Q 021121 4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHD-SLLIAAVAD 82 (317)
Q Consensus 4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d 82 (317)
++....+.++..+|.+.+..+++.. -+++.|+.....+..-+.. -.+-.|-...|+|... .+-++....
T Consensus 21 l~v~~~~~a~si~p~grdi~lAsr~---------gl~i~dld~p~~ppr~l~h-~tpw~vad~qws~h~a~~~wiVsts~ 90 (1081)
T KOG0309|consen 21 LKVDGGFNAVSINPSGRDIVLASRQ---------GLYIIDLDDPFTPPRWLHH-ITPWQVADVQWSPHPAKPYWIVSTSN 90 (1081)
T ss_pred EEecCcccceeeccccchhhhhhhc---------CeEEEeccCCCCCceeeec-cCcchhcceecccCCCCceeEEecCc
Confidence 4456677788899964444443322 5778888765433333321 2233577888987532 244444455
Q ss_pred CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc-eeEEeeccccceEEEEEecCC
Q 021121 83 GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT-SVRTFKEHAYCVYNATWNPRH 161 (317)
Q Consensus 83 g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~ 161 (317)
..-.+|++...........+.+|...|+.+.|+|..+..+++++-|..+..||+++.. .+..+..-...-..+.|+..+
T Consensus 91 qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~ 170 (1081)
T KOG0309|consen 91 QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKD 170 (1081)
T ss_pred chhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccC
Confidence 5677999987655556667789999999999999999899999999999999998864 334444444557889999886
Q ss_pred CCeEEEEeCCCeEEEEeCCCC-CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCcee
Q 021121 162 SDVFCSASGDCTLRIWDVREM-GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVR 240 (317)
Q Consensus 162 ~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~ 240 (317)
++.+ +.+....|++||++.+ .++..+++|...++.++|.......+.+++.|++++.||..+...........+.+|.
T Consensus 171 p~vl-asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw 249 (1081)
T KOG0309|consen 171 PNVL-ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIW 249 (1081)
T ss_pred cchh-hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcce
Confidence 6666 4566778999999987 5677888899999999998867778999999999999999876544444445667888
Q ss_pred EEEecCCCCeeEEeeecC-CeEEE---------EecccccceeeeeecccceeEeEEEEecc---------CCeEEEeec
Q 021121 241 KVKFSPHRRNLLASCSYD-MTVCL---------WDFMVEDALVGRYDHHTEFAVGVDMSVLV---------EGLLASTGW 301 (317)
Q Consensus 241 ~~~~~~~~~~~l~~~~~d-~~i~v---------wd~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~~l~s~~~ 301 (317)
.-++.|-|+.+++.-... ..+.+ |+..+....+..+.+|...|....|-..+ +-.|+|-+.
T Consensus 250 ~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSk 329 (1081)
T KOG0309|consen 250 RGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSK 329 (1081)
T ss_pred eccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeec
Confidence 888888776544332221 23333 44444556788999999988877775431 127999999
Q ss_pred CCcEEEEecCC
Q 021121 302 DELVYVWQQGM 312 (317)
Q Consensus 302 dg~i~~w~~~~ 312 (317)
|..+++|.++.
T Consensus 330 D~~lrlWpI~~ 340 (1081)
T KOG0309|consen 330 DQTLRLWPIDS 340 (1081)
T ss_pred CCceEeeeccH
Confidence 99999999865
No 233
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=2.4e-14 Score=120.98 Aligned_cols=216 Identities=8% Similarity=0.033 Sum_probs=138.2
Q ss_pred eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEc---CCCEEEEEEcCCCceeEEeeccccceEEEEEecC
Q 021121 84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSS---WDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR 160 (317)
Q Consensus 84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (317)
.|.++|.+.. ....+..+...+...+|+|+|+ .|+..+ .+..|.+|++.+++... +....+......|+|+
T Consensus 180 ~l~~~d~dg~----~~~~lt~~~~~~~~p~wSPDG~-~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPD 253 (429)
T PRK03629 180 ELRVSDYDGY----NQFVVHRSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPD 253 (429)
T ss_pred eEEEEcCCCC----CCEEeecCCCceeeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCC
Confidence 6888887643 2233445667899999999998 555432 34579999998875433 2223344567899999
Q ss_pred CCCeEEEEeCCC--eEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecC-Cc--EEEEEccCCCccEEEEecC
Q 021121 161 HSDVFCSASGDC--TLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVD-KS--IKIWDVRNYRVPIAVLNGH 235 (317)
Q Consensus 161 ~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-~~--i~v~d~~~~~~~~~~~~~~ 235 (317)
+..++++.+.+| .|++||+++++... +..+...+....|+| +++.|+..+.+ +. |+++|+.++. ...+..+
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~--~~~lt~~ 329 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGA--PQRITWE 329 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCC--eEEeecC
Confidence 444444445555 58999998776543 333445678899999 88877766653 44 4445665543 3344444
Q ss_pred CCceeEEEecCCCCeeEEeeecC--CeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCc---EEEEec
Q 021121 236 GYAVRKVKFSPHRRNLLASCSYD--MTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDEL---VYVWQQ 310 (317)
Q Consensus 236 ~~~v~~~~~~~~~~~~l~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~---i~~w~~ 310 (317)
........|+|+|+.+++++..+ ..|.+||+.+++.. .+... .......|+|+ +..|+.++.++. +.++++
T Consensus 330 ~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~--~Lt~~-~~~~~p~~SpD-G~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 330 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ--VLTDT-FLDETPSIAPN-GTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE--EeCCC-CCCCCceECCC-CCEEEEEEcCCCceEEEEEEC
Confidence 44566789999999544444333 35888998877522 22221 22346789999 777777776653 677777
Q ss_pred CCC
Q 021121 311 GMD 313 (317)
Q Consensus 311 ~~~ 313 (317)
+..
T Consensus 406 ~G~ 408 (429)
T PRK03629 406 DGR 408 (429)
T ss_pred CCC
Confidence 543
No 234
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=2.9e-14 Score=121.19 Aligned_cols=216 Identities=11% Similarity=0.047 Sum_probs=142.1
Q ss_pred eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEc---CCCEEEEEEcCCCceeEEeeccccceEEEEEecC
Q 021121 84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSS---WDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR 160 (317)
Q Consensus 84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (317)
.|.++|.+. .....+..|...+.+..|+|+|+ .|+..+ .+..|.+||+.+++.. .+..+.+.+...+|+|+
T Consensus 183 ~l~~~d~dg----~~~~~lt~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPD 256 (435)
T PRK05137 183 RLAIMDQDG----ANVRYLTDGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPD 256 (435)
T ss_pred EEEEECCCC----CCcEEEecCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCC
Confidence 677777643 34445667788999999999998 565544 3468999999887653 44445667788999999
Q ss_pred CCCeEEEEeCCCe--EEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEec-CC--cEEEEEccCCCccEEEEecC
Q 021121 161 HSDVFCSASGDCT--LRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASV-DK--SIKIWDVRNYRVPIAVLNGH 235 (317)
Q Consensus 161 ~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~ 235 (317)
+..++++.+.++. |++||+.+++. ..+..+........|+| +++.++..+. ++ .|+++|+.... ...+..+
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~--~~~lt~~ 332 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSN--PRRISFG 332 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCC--eEEeecC
Confidence 4445556666655 77789887654 44554555567789999 8887776663 33 58888876644 3344434
Q ss_pred CCceeEEEecCCCCeeEEeeecC--CeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEE-eecC-----CcEEE
Q 021121 236 GYAVRKVKFSPHRRNLLASCSYD--MTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLAS-TGWD-----ELVYV 307 (317)
Q Consensus 236 ~~~v~~~~~~~~~~~~l~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~~~d-----g~i~~ 307 (317)
...+....|+|+|+.++++.... ..|.+||+..+.. ..+.. ...+....|+|+ ++.|+. .... ..|++
T Consensus 333 ~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~--~~lt~-~~~~~~p~~spD-G~~i~~~~~~~~~~~~~~L~~ 408 (435)
T PRK05137 333 GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE--RILTS-GFLVEGPTWAPN-GRVIMFFRQTPGSGGAPKLYT 408 (435)
T ss_pred CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce--EeccC-CCCCCCCeECCC-CCEEEEEEccCCCCCcceEEE
Confidence 45567789999999544433222 3588888765442 22221 234678899999 565544 4333 25777
Q ss_pred EecCCC
Q 021121 308 WQQGMD 313 (317)
Q Consensus 308 w~~~~~ 313 (317)
.+++..
T Consensus 409 ~dl~g~ 414 (435)
T PRK05137 409 VDLTGR 414 (435)
T ss_pred EECCCC
Confidence 777553
No 235
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.70 E-value=5.1e-15 Score=110.78 Aligned_cols=152 Identities=22% Similarity=0.428 Sum_probs=110.1
Q ss_pred eEEEecCCCCCeEEEEEc---------CCeEEEEEeCCCCCCCCceeecc-CCcceEEEEEecCCCCEE-EEEcCCCEEE
Q 021121 64 YDLAWSESHDSLLIAAVA---------DGSVKIYDTALPPTANPIRSLHE-HTREVHSADYNPTRRDSF-ITSSWDDTVK 132 (317)
Q Consensus 64 ~~~~~~~~~~~~l~~~~~---------dg~i~v~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l-~~~~~dg~v~ 132 (317)
..+.|+|+|+.+++.... -|...+|.++..+ .+...+.- ..++|.+++|+|++..++ +.|..++.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~--~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN--IPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC--CccceeeccCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 457899999755555541 2457777775432 23333332 345799999999998432 2345678999
Q ss_pred EEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeC---CCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEE
Q 021121 133 LWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASG---DCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIA 209 (317)
Q Consensus 133 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~ 209 (317)
+||++ ++.+..+. ...++.+.|+|+ ++++++++. .|.|.+||.++.+.+.... | ..+..++|+| +|++++
T Consensus 87 lyd~~-~~~i~~~~--~~~~n~i~wsP~-G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsP-dGr~~~ 159 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG--TQPRNTISWSPD-GRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSP-DGRYLA 159 (194)
T ss_pred EEcCc-ccEeEeec--CCCceEEEECCC-CCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcC-CCCEEE
Confidence 99997 66666654 567889999999 888888764 4679999999877776654 3 3478999999 999999
Q ss_pred EEec------CCcEEEEEccC
Q 021121 210 SASV------DKSIKIWDVRN 224 (317)
Q Consensus 210 ~~~~------d~~i~v~d~~~ 224 (317)
++.. |..++||+...
T Consensus 160 ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEEeccceeccccEEEEEecC
Confidence 9874 67889999864
No 236
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.69 E-value=1.6e-14 Score=110.86 Aligned_cols=244 Identities=14% Similarity=0.213 Sum_probs=172.6
Q ss_pred cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEE
Q 021121 8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKI 87 (317)
Q Consensus 8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 87 (317)
+.+++...-|.+++.+-++ . |.+++||--.+.......+ ....+.+++++.+.++. ..|++|-..|++.-
T Consensus 25 d~vn~~~l~~~e~gv~~~s--~------drtvrv~lkrds~q~wpsI-~~~mP~~~~~~~y~~e~-~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 25 DDVNAAILIPKEEGVISVS--E------DRTVRVWLKRDSGQYWPSI-YHYMPSPCSAMEYVSES-RRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhhheeccCCCCeEEcc--c------cceeeeEEeccccccCchh-hhhCCCCceEeeeeccc-eEEEEEEecceEEE
Confidence 4455555555434433332 2 7799999765544322222 22456789999999987 69999999999999
Q ss_pred EEeCCC-CCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEE
Q 021121 88 YDTALP-PTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFC 166 (317)
Q Consensus 88 ~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 166 (317)
+.+... +.....+....|...+..+-|+.... .+++.+.|..+.---.+.+..+..+. .....+++.+.- .+..
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~---~~~f 169 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDA---LYAF 169 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceE-eeccCCCCceee---EEEE
Confidence 987643 12244556678999999999987766 88999988877655555554443332 111112222211 1344
Q ss_pred EEeCCCeEEEEeC--CCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEe
Q 021121 167 SASGDCTLRIWDV--REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKF 244 (317)
Q Consensus 167 ~~~~dg~i~i~d~--~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~ 244 (317)
.|...|.|....+ ....++..+.+|...+.++.|.| ...++.+|..|..+.+||+...+.....+.+|...|..+..
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~ 248 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSY 248 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhh
Confidence 5555666655444 34467778899999999999999 89999999999999999998877667778899999999998
Q ss_pred cCCCCeeEEeeecCCeEEEEeccc
Q 021121 245 SPHRRNLLASCSYDMTVCLWDFMV 268 (317)
Q Consensus 245 ~~~~~~~l~~~~~d~~i~vwd~~~ 268 (317)
.+--+ .+++++.||.|.+||+..
T Consensus 249 ~~~t~-~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 249 AQHTR-QLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhe-eeeeccCCCeEEEEeccc
Confidence 88777 588999999999999863
No 237
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=4.7e-16 Score=124.18 Aligned_cols=256 Identities=16% Similarity=0.226 Sum_probs=191.0
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
|...|..-.|-|..+.+-+++.+. ||.+++=.+...+..........|.++|..++.-|+.++-|.+++.|+.+
T Consensus 184 H~~NvfQaKFiP~s~d~ti~~~s~------dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v 257 (559)
T KOG1334|consen 184 HCNNVFQAKFIPFSGDRTIVTSSR------DGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVV 257 (559)
T ss_pred cccchhhhhccCCCCCcCceeccc------cCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccce
Confidence 556677778999877888888776 99999998877664343455558999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCceeeccCCc---ceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce------eEEee------cccc
Q 021121 86 KIYDTALPPTANPIRSLHEHTR---EVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS------VRTFK------EHAY 150 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~------~~~~~------~~~~ 150 (317)
.-+|+..............+.. ...+++..|...+.+++++.|-.+++||.+.-.. +.++. ...-
T Consensus 258 ~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v 337 (559)
T KOG1334|consen 258 FHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPV 337 (559)
T ss_pred eeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcc
Confidence 9999987633333333333333 5678899999888999999999999999764321 12221 2234
Q ss_pred ceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCC------------cee-eeccCccc--eEEEEecCCCCcEEEEEecCC
Q 021121 151 CVYNATWNPRHSDVFCSASGDCTLRIWDVREMG------------STM-IIPAHEFE--ILACDWNKYDDCLIASASVDK 215 (317)
Q Consensus 151 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------~~~-~~~~~~~~--v~~i~~~~~~~~~l~~~~~d~ 215 (317)
.|++++|+.+++.++ ++..|-.|+++.-..+. .+. .+++|... |..+-|--....++++|+.-|
T Consensus 338 ~ITgl~Ysh~~sElL-aSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCG 416 (559)
T KOG1334|consen 338 NITGLVYSHDGSELL-ASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCG 416 (559)
T ss_pred cceeEEecCCcccee-eeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccc
Confidence 699999998855555 56667788998543221 112 25666543 666665432789999999999
Q ss_pred cEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121 216 SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED 270 (317)
Q Consensus 216 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~ 270 (317)
.|.+|+-.+.+. +..+.+....|+||.-+|.-+ +||+.+-|..|+||-..+.+
T Consensus 417 hIFiW~K~t~ei-i~~MegDr~VVNCLEpHP~~P-vLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 417 HIFIWDKKTGEI-IRFMEGDRHVVNCLEPHPHLP-VLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred eEEEEecchhHH-HHHhhcccceEeccCCCCCCc-hhhccCCccceeeecCCccc
Confidence 999999888664 666777666999999999998 89999999999999875443
No 238
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=3.5e-14 Score=120.55 Aligned_cols=216 Identities=9% Similarity=0.031 Sum_probs=138.9
Q ss_pred CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcC---CCEEEEEEcCCCceeEEeeccccceEEEEEec
Q 021121 83 GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW---DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP 159 (317)
Q Consensus 83 g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 159 (317)
..|.+||... .....+..+...+.+..|+|+++ .|+..+. +..|.+||+.+++... +....+...+..|+|
T Consensus 184 ~~l~i~D~~g----~~~~~lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~Sp 257 (433)
T PRK04922 184 YALQVADSDG----YNPQTILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSP 257 (433)
T ss_pred EEEEEECCCC----CCceEeecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECC
Confidence 3588888753 23344556677899999999998 6665553 3479999998876543 333444556789999
Q ss_pred CCCCeEEEEeCCC--eEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEec-CCc--EEEEEccCCCccEEEEec
Q 021121 160 RHSDVFCSASGDC--TLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASV-DKS--IKIWDVRNYRVPIAVLNG 234 (317)
Q Consensus 160 ~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-d~~--i~v~d~~~~~~~~~~~~~ 234 (317)
++..++++.+.+| .|++||+.+++. ..+..+.......+|+| +++.|+..+. ++. |+++|+.+++ ...+..
T Consensus 258 DG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~--~~~lt~ 333 (433)
T PRK04922 258 DGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGS--AERLTF 333 (433)
T ss_pred CCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCC--eEEeec
Confidence 9444555666665 599999987764 34444544556789999 8887776653 444 6666766544 233333
Q ss_pred CCCceeEEEecCCCCeeEEeeecCC--eEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeec-C--CcEEEEe
Q 021121 235 HGYAVRKVKFSPHRRNLLASCSYDM--TVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGW-D--ELVYVWQ 309 (317)
Q Consensus 235 ~~~~v~~~~~~~~~~~~l~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d--g~i~~w~ 309 (317)
+.......+|+|+|+.++++...++ .|.+||+.+++.. .+. +........|+|+ +++|+..+. . +.|.+++
T Consensus 334 ~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~--~Lt-~~~~~~~p~~spd-G~~i~~~s~~~g~~~L~~~~ 409 (433)
T PRK04922 334 QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR--TLT-PGSLDESPSFAPN-GSMVLYATREGGRGVLAAVS 409 (433)
T ss_pred CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE--ECC-CCCCCCCceECCC-CCEEEEEEecCCceEEEEEE
Confidence 3334557899999995444333332 6999999876532 222 2223556799999 665554443 2 3567777
Q ss_pred cCC
Q 021121 310 QGM 312 (317)
Q Consensus 310 ~~~ 312 (317)
++.
T Consensus 410 ~~g 412 (433)
T PRK04922 410 TDG 412 (433)
T ss_pred CCC
Confidence 654
No 239
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=1e-13 Score=117.95 Aligned_cols=236 Identities=8% Similarity=0.025 Sum_probs=143.7
Q ss_pred eEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEc-C--CeEEEEEeCCCCCCCCceeeccCCcceEEEEE
Q 021121 38 RVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVA-D--GSVKIYDTALPPTANPIRSLHEHTREVHSADY 114 (317)
Q Consensus 38 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d--g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (317)
.|.++|.+... .+.+ ..+...+...+|+|+|+ .|+..+. + ..|.+|++..++ . ..+....+.+....|
T Consensus 180 ~l~~~d~~g~~--~~~l--~~~~~~~~~p~wSpDG~-~la~~s~~~~~~~l~~~~l~~g~---~-~~l~~~~g~~~~~~~ 250 (430)
T PRK00178 180 TLQRSDYDGAR--AVTL--LQSREPILSPRWSPDGK-RIAYVSFEQKRPRIFVQNLDTGR---R-EQITNFEGLNGAPAW 250 (430)
T ss_pred EEEEECCCCCC--ceEE--ecCCCceeeeeECCCCC-EEEEEEcCCCCCEEEEEECCCCC---E-EEccCCCCCcCCeEE
Confidence 57777776543 2222 25567789999999995 5555443 3 368888987652 1 222223344556899
Q ss_pred ecCCCCEEEEEcCCC--EEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCC--eEEEEeCCCCCceeeecc
Q 021121 115 NPTRRDSFITSSWDD--TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDC--TLRIWDVREMGSTMIIPA 190 (317)
Q Consensus 115 ~~~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~ 190 (317)
+|+|+.++++.+.+| .|.++|+.+++.. .+..+........|+|++..++++...+| .|+++|+.+++... +..
T Consensus 251 SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~ 328 (430)
T PRK00178 251 SPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTF 328 (430)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eec
Confidence 999984445665555 6888899887643 34445555677899999444444444444 57777887765433 221
Q ss_pred CccceEEEEecCCCCcEEEEEecC-C--cEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCe--EEEEe
Q 021121 191 HEFEILACDWNKYDDCLIASASVD-K--SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMT--VCLWD 265 (317)
Q Consensus 191 ~~~~v~~i~~~~~~~~~l~~~~~d-~--~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--i~vwd 265 (317)
.........|+| +++.++....+ + .|.++|+.+++. ..+.. ........|+|+|+.++++...++. +.+.+
T Consensus 329 ~~~~~~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~tg~~--~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~ 404 (430)
T PRK00178 329 VGNYNARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQRGSV--RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVS 404 (430)
T ss_pred CCCCccceEECC-CCCEEEEEEccCCceEEEEEECCCCCE--EEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence 222334578999 88888776643 3 488889887653 33322 2223356899999965555554443 55666
Q ss_pred cccccceeeeeecccceeEeEEEEe
Q 021121 266 FMVEDALVGRYDHHTEFAVGVDMSV 290 (317)
Q Consensus 266 ~~~~~~~~~~~~~~~~~v~~~~~~~ 290 (317)
+... ....+..+.+.+...+|+|
T Consensus 405 ~~g~--~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 405 INGR--VRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred CCCC--ceEECcCCCCCcCCCccCC
Confidence 6433 2234444455677778876
No 240
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=6.1e-14 Score=118.68 Aligned_cols=208 Identities=12% Similarity=0.039 Sum_probs=127.7
Q ss_pred eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcC---CCEEEEEEcCCCceeEEeeccccceEEEEEecC
Q 021121 84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW---DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR 160 (317)
Q Consensus 84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (317)
.|.++|.+. .....+..+...+.+.+|+|+|+ .|+..+. ...|.+||+.+++... +....+.....+|+|+
T Consensus 177 ~L~~~D~dG----~~~~~l~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPD 250 (427)
T PRK02889 177 QLQISDADG----QNAQSALSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPD 250 (427)
T ss_pred EEEEECCCC----CCceEeccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCC
Confidence 455555432 33334456778899999999998 5655443 2469999999886543 3334455678999999
Q ss_pred CCCeEEEEeCCCeEEEEe--CCCCCceeeeccCccceEEEEecCCCCcEEEEEec-CCcEEEEEccCCCccEEEEecCCC
Q 021121 161 HSDVFCSASGDCTLRIWD--VREMGSTMIIPAHEFEILACDWNKYDDCLIASASV-DKSIKIWDVRNYRVPIAVLNGHGY 237 (317)
Q Consensus 161 ~~~~l~~~~~dg~i~i~d--~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~ 237 (317)
+..++++.+.+|...+|. +..+. ...+..+........|+| +++.++..+. ++...+|.+.........+.....
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~ 328 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGS 328 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCC
Confidence 444445677787766655 44433 444544554556788999 8887776553 456666655422111222222233
Q ss_pred ceeEEEecCCCCeeEEeeecCC---eEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEee-cCCc
Q 021121 238 AVRKVKFSPHRRNLLASCSYDM---TVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTG-WDEL 304 (317)
Q Consensus 238 ~v~~~~~~~~~~~~l~~~~~d~---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~ 304 (317)
......|+|+|+. |+..+.++ .|.+||+.+++.. .+... .......|+|+ ++.|+..+ ..|.
T Consensus 329 ~~~~~~~SpDG~~-Ia~~s~~~g~~~I~v~d~~~g~~~--~lt~~-~~~~~p~~spd-g~~l~~~~~~~g~ 394 (427)
T PRK02889 329 YNTSPRISPDGKL-LAYISRVGGAFKLYVQDLATGQVT--ALTDT-TRDESPSFAPN-GRYILYATQQGGR 394 (427)
T ss_pred CcCceEECCCCCE-EEEEEccCCcEEEEEEECCCCCeE--EccCC-CCccCceECCC-CCEEEEEEecCCC
Confidence 3456889999995 55544443 6999999877522 22222 23467899999 55554444 4444
No 241
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.68 E-value=2.5e-12 Score=105.82 Aligned_cols=256 Identities=17% Similarity=0.203 Sum_probs=161.4
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeec-CCCCeeEEEecCCCCCeEEEEE-cCC
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFD-TADGVYDLAWSESHDSLLIAAV-ADG 83 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~-~dg 83 (317)
.......++++| ++.++.+..+.. ...|.|..|++......+..+.... .......++++|++. +|+++. .+|
T Consensus 35 ~~~~Ps~l~~~~--~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~-~l~vany~~g 109 (345)
T PF10282_consen 35 EGENPSWLAVSP--DGRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGR-FLYVANYGGG 109 (345)
T ss_dssp ESSSECCEEE-T--TSSEEEEEETTS--STTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSS-EEEEEETTTT
T ss_pred CCCCCceEEEEe--CCCEEEEEEccc--cCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCC-EEEEEEccCC
Confidence 345566788999 556666655411 1268999999988744455555544 455667899999985 555554 589
Q ss_pred eEEEEEeCCCCCCCCce-ee----------ccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc--eeE--Eee-c
Q 021121 84 SVKIYDTALPPTANPIR-SL----------HEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT--SVR--TFK-E 147 (317)
Q Consensus 84 ~i~v~~~~~~~~~~~~~-~~----------~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~--~~~-~ 147 (317)
.|.++++.......... .. ........++.++|+++.++++.-....|.+|+++... ... .+. .
T Consensus 110 ~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~ 189 (345)
T PF10282_consen 110 SVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVP 189 (345)
T ss_dssp EEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECS
T ss_pred eEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccc
Confidence 99999998642221111 11 11235578899999998444445556689999998765 211 222 2
Q ss_pred cccceEEEEEecCCCCeEEEEeCCCeEEEEeCC--CCC--ceeeecc------CccceEEEEecCCCCcEEEEEe-cCCc
Q 021121 148 HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR--EMG--STMIIPA------HEFEILACDWNKYDDCLIASAS-VDKS 216 (317)
Q Consensus 148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~--~~~~~~~------~~~~v~~i~~~~~~~~~l~~~~-~d~~ 216 (317)
.......+.|+|++..+.++.-.++.|.++++. +++ .+..+.. .......++++| ++++|.++. ..+.
T Consensus 190 ~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyvsnr~~~s 268 (345)
T PF10282_consen 190 PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-DGRFLYVSNRGSNS 268 (345)
T ss_dssp TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-TSSEEEEEECTTTE
T ss_pred cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec-CCCEEEEEeccCCE
Confidence 345689999999944445556668889999988 332 1222211 112567899999 888776655 5678
Q ss_pred EEEEEccCC--Cc-cEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecc
Q 021121 217 IKIWDVRNY--RV-PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFM 267 (317)
Q Consensus 217 i~v~d~~~~--~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~ 267 (317)
|.+|++... +. .+..........+.++++|+|+.++++...++.|.+|++.
T Consensus 269 I~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 269 ISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 999999432 21 1223333345579999999999655555678899999875
No 242
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.67 E-value=2.5e-14 Score=109.80 Aligned_cols=249 Identities=19% Similarity=0.296 Sum_probs=173.8
Q ss_pred CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCC--CCCceeeccCC------------cceEEEEEecCCC-CEEE
Q 021121 59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPT--ANPIRSLHEHT------------REVHSADYNPTRR-DSFI 123 (317)
Q Consensus 59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~--~~~~~~~~~~~------------~~v~~~~~~~~~~-~~l~ 123 (317)
...-|.++.|...| .+|++|..+|.|.++.-..... ......++.|. ..|..+.|.++++ ..++
T Consensus 24 eadiis~vef~~~G-e~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 24 EADIISAVEFDHYG-ERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hhcceeeEEeeccc-ceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 44568999999999 5999999999999997554321 11222333333 4688999987653 3677
Q ss_pred EEcCCCEEEEEEcCCCceeE-----------------------------------Ee-eccccceEEEEEecCCCCeEEE
Q 021121 124 TSSWDDTVKLWTVDRPTSVR-----------------------------------TF-KEHAYCVYNATWNPRHSDVFCS 167 (317)
Q Consensus 124 ~~~~dg~v~iwd~~~~~~~~-----------------------------------~~-~~~~~~v~~~~~~~~~~~~l~~ 167 (317)
..+.|.+|++|.+....... .+ .+|..-|+++.++.+ ...+++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD-~Et~lS 181 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD-KETFLS 181 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc-cceEee
Confidence 77889999999875421100 01 257778999999988 666655
Q ss_pred EeCCCeEEEEeCCCCCcee---eeccC-----ccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEE--------
Q 021121 168 ASGDCTLRIWDVREMGSTM---IIPAH-----EFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAV-------- 231 (317)
Q Consensus 168 ~~~dg~i~i~d~~~~~~~~---~~~~~-----~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-------- 231 (317)
+ .|=.|.+|+++-..... .++++ ..-|++..|+|...++++..+..|+|++.|+|....+...
T Consensus 182 A-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 182 A-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred c-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 4 57789999987543322 22222 2348899999988899999999999999999954321111
Q ss_pred -------EecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccc------------ee---EeEEEE
Q 021121 232 -------LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE------------FA---VGVDMS 289 (317)
Q Consensus 232 -------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~------------~v---~~~~~~ 289 (317)
+..--..|..+.|+++|+ ++++-+ --+|++||+.....++..+.-|.. .| ..++|+
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGr-yilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s 338 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGR-YILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS 338 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCc-EEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc
Confidence 111124688999999999 576543 368999999665555566655531 22 457888
Q ss_pred eccCCeEEEeecCCcEEEEecCCC
Q 021121 290 VLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 290 ~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
.+ +.+++||+....++++++..+
T Consensus 339 g~-~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 339 GN-DSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred CC-cceEecccccceEEEecCCCC
Confidence 77 779999999999999996544
No 243
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.66 E-value=1.2e-14 Score=126.12 Aligned_cols=193 Identities=17% Similarity=0.216 Sum_probs=154.0
Q ss_pred EEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccc----eEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceee
Q 021121 112 ADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYC----VYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMI 187 (317)
Q Consensus 112 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 187 (317)
..+.-+.. .++.++.+..+.+||...+....+....... ..-+.++++ .-++++|+.-+.|.+|+....+....
T Consensus 93 ~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~-~~~i~~gsv~~~iivW~~~~dn~p~~ 170 (967)
T KOG0974|consen 93 AKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAE-ELYIASGSVFGEIIVWKPHEDNKPIR 170 (967)
T ss_pred cchhhhcc-eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCc-EEEEEeccccccEEEEeccccCCcce
Confidence 34444445 6778888899999999988776666543321 122334555 66888999999999999985555556
Q ss_pred eccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecc
Q 021121 188 IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFM 267 (317)
Q Consensus 188 ~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~ 267 (317)
+.+|++.+.++.++. ++.++++.++|.++|+|++.+.+......-+|...|..++|.|+ .+++++.|-+.++|+..
T Consensus 171 l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~ 246 (967)
T KOG0974|consen 171 LKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVN 246 (967)
T ss_pred ecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEEEEEecc
Confidence 889999999999998 99999999999999999999988755567789999999999998 49999999999999765
Q ss_pred cccceeeeeeccc-ceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121 268 VEDALVGRYDHHT-EFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 268 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
..+ +..+..|. ..|..++..+. ...++|++.|+.+++|++...
T Consensus 247 ~~~--l~~y~~h~g~~iw~~~~~~~-~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 247 GTQ--LEVYDEHSGKGIWKIAVPIG-VIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred cce--ehhhhhhhhcceeEEEEcCC-ceEEEeeccCcchhhhhhhcc
Confidence 433 34666664 46888888886 779999999999999998753
No 244
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.66 E-value=7.5e-14 Score=114.34 Aligned_cols=192 Identities=17% Similarity=0.222 Sum_probs=156.0
Q ss_pred CCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEe------c-------------CCCCEEEEEcCCCEEE
Q 021121 72 HDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN------P-------------TRRDSFITSSWDDTVK 132 (317)
Q Consensus 72 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~-------------~~~~~l~~~~~dg~v~ 132 (317)
+..++|....||.+++|+...+...........-.+..++..|. | .+...++-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 34689999999999999998763222222222234455555553 1 1223688888999999
Q ss_pred EEEcCCCceeEEee--ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEE
Q 021121 133 LWTVDRPTSVRTFK--EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIAS 210 (317)
Q Consensus 133 iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~ 210 (317)
+|++..++....+. .|.++|.++.++.+ -..|.+++.|+.+..|+.......+........+.+++.+| ++..+++
T Consensus 84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~-~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~-D~~~l~~ 161 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHYGNVNEILDAQR-LGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISP-DGKILLT 161 (541)
T ss_pred EEEecCCeEEEEEecCCCCCcceeeecccc-cCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcC-CCCEEEe
Confidence 99999998887775 68899999999987 88999999999999999999999999998888899999999 8999998
Q ss_pred EecCCcEEEEEccCCCccEEEEecCCCceeEEEecCC-----CCeeEEeeecCCeEEEEeccc
Q 021121 211 ASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPH-----RRNLLASCSYDMTVCLWDFMV 268 (317)
Q Consensus 211 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~~~d~~i~vwd~~~ 268 (317)
++ +.|++||+++.+ .+..+.+|.++|+++.|--. |.++|.+...+..+.+|-+..
T Consensus 162 as--~~ik~~~~~~ke-vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKE-VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc--ceEEEEEccCce-EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 86 689999999966 48999999999999999877 777777777778888887765
No 245
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.66 E-value=1.5e-13 Score=116.88 Aligned_cols=235 Identities=14% Similarity=0.105 Sum_probs=145.0
Q ss_pred CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC---CeEEEEEeCCCCCCCCceeeccCCcceEEE
Q 021121 36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD---GSVKIYDTALPPTANPIRSLHEHTREVHSA 112 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (317)
...|.++|.+... .+.+ ..+...+...+|+|++. .|+....+ ..|.+|++..+ . ...+..+.+.+.++
T Consensus 169 ~~~l~~~d~~g~~--~~~l--~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g---~-~~~~~~~~~~~~~~ 239 (417)
T TIGR02800 169 RYELQVADYDGAN--PQTI--TRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATG---Q-REKVASFPGMNGAP 239 (417)
T ss_pred cceEEEEcCCCCC--CEEe--ecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCC---C-EEEeecCCCCccce
Confidence 3467888775443 2222 24556788999999995 66655543 47999998764 2 22233455667778
Q ss_pred EEecCCCCEEEEEcCCC--EEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEe-CCC--eEEEEeCCCCCceee
Q 021121 113 DYNPTRRDSFITSSWDD--TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSAS-GDC--TLRIWDVREMGSTMI 187 (317)
Q Consensus 113 ~~~~~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~ 187 (317)
+|+|+++.++++.+.++ .|++||+.+++.. .+..+........|+|+ ++.++..+ .++ .|+++|+.+++. ..
T Consensus 240 ~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~d-g~~l~~~s~~~g~~~iy~~d~~~~~~-~~ 316 (417)
T TIGR02800 240 AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPD-GKSIAFTSDRGGSPQIYMMDADGGEV-RR 316 (417)
T ss_pred EECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCC-CCEEEEEECCCCCceEEEEECCCCCE-EE
Confidence 99999984555555554 5888998876543 34344444557789998 66555444 333 588888876654 33
Q ss_pred eccCccceEEEEecCCCCcEEEEEecCC---cEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCC--eEE
Q 021121 188 IPAHEFEILACDWNKYDDCLIASASVDK---SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDM--TVC 262 (317)
Q Consensus 188 ~~~~~~~v~~i~~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~ 262 (317)
+..+........|+| ++++++.+..++ .|.+||+.+.. ...+... .......|+|+++.++++...++ .+.
T Consensus 317 l~~~~~~~~~~~~sp-dg~~i~~~~~~~~~~~i~~~d~~~~~--~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~ 392 (417)
T TIGR02800 317 LTFRGGYNASPSWSP-DGDLIAFVHREGGGFNIAVMDLDGGG--ERVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLG 392 (417)
T ss_pred eecCCCCccCeEECC-CCCEEEEEEccCCceEEEEEeCCCCC--eEEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEE
Confidence 433455667889999 888888887765 78899987743 3333322 23456789999996444444443 344
Q ss_pred EEecccccceeeeeecccceeEeEEE
Q 021121 263 LWDFMVEDALVGRYDHHTEFAVGVDM 288 (317)
Q Consensus 263 vwd~~~~~~~~~~~~~~~~~v~~~~~ 288 (317)
+.+.... ....+..+.+.+..++|
T Consensus 393 ~~~~~g~--~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 393 LVSTDGR--FRARLPLGNGDVREPAW 416 (417)
T ss_pred EEECCCc--eeeECCCCCCCcCCCCC
Confidence 5453322 22333333444444444
No 246
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.66 E-value=5.1e-13 Score=109.85 Aligned_cols=189 Identities=15% Similarity=0.146 Sum_probs=130.6
Q ss_pred eE-EEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceE
Q 021121 75 LL-IAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVY 153 (317)
Q Consensus 75 ~l-~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 153 (317)
++ ++-..++.|.+.|..+. +.+..+......-..+.|+||++ ++++++.||.|.++|+.+.+.+.+++... ...
T Consensus 7 l~~V~~~~~~~v~viD~~t~---~~~~~i~~~~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~ 81 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATN---KVVARIPTGGAPHAGLKFSPDGR-YLYVANRDGTVSVIDLATGKVVATIKVGG-NPR 81 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT----SEEEEEE-STTEEEEEE-TT-SS-EEEEEETTSEEEEEETTSSSEEEEEE-SS-EEE
T ss_pred EEEEEecCCCEEEEEECCCC---eEEEEEcCCCCceeEEEecCCCC-EEEEEcCCCeEEEEECCcccEEEEEecCC-Ccc
Confidence 44 45556899999998765 66677765444445578999998 78888899999999999999999988544 478
Q ss_pred EEEEecCCCCeEEE-EeCCCeEEEEeCCCCCceeeeccC-------ccceEEEEecCCCCc-EEEEEecCCcEEEEEccC
Q 021121 154 NATWNPRHSDVFCS-ASGDCTLRIWDVREMGSTMIIPAH-------EFEILACDWNKYDDC-LIASASVDKSIKIWDVRN 224 (317)
Q Consensus 154 ~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~-~l~~~~~d~~i~v~d~~~ 224 (317)
+++++++ ++++++ ....+.+.++|.++.+++..+... ...+..+..+| ... ++++.-+.+.|.+.|...
T Consensus 82 ~i~~s~D-G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 82 GIAVSPD-GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEE--T-TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTT
T ss_pred eEEEcCC-CCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEecc
Confidence 8999999 665554 557899999999999988877543 33567788888 555 555555558898889887
Q ss_pred CCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121 225 YRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED 270 (317)
Q Consensus 225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~ 270 (317)
.+.................|+|++++++++...++.|.++|..+.+
T Consensus 160 ~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k 205 (369)
T PF02239_consen 160 PKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK 205 (369)
T ss_dssp SSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred ccccceeeecccccccccccCcccceeeecccccceeEEEeeccce
Confidence 6543333433455677899999999767766777889999987764
No 247
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.66 E-value=3.9e-14 Score=106.47 Aligned_cols=230 Identities=17% Similarity=0.191 Sum_probs=158.2
Q ss_pred CceEEEEecCCCCCc--ceeeeeecCCC-CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEE
Q 021121 36 NGRVHVLDLSPAAPA--LTELVAFDTAD-GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSA 112 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~--~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (317)
+|.|.+|........ +..+....... .-.++.|++.+ ..++++..+|.+.+-+.... ..+.....+.|.-+++..
T Consensus 94 ~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~-~le~vq~wk~He~E~Wta 171 (339)
T KOG0280|consen 94 RGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSG-TKIFVSDSRGSISGVYETEM-VLEKVQTWKVHEFEAWTA 171 (339)
T ss_pred cceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccC-ceEEEEcCCCcEEEEeccee-eeeecccccccceeeeee
Confidence 789999987654321 11121111111 24577888887 57888888999985554332 334455788999999999
Q ss_pred EEecCCCCEEEEEcCCCEEEEEEcCC-CceeEE-eeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC-Cceeeec
Q 021121 113 DYNPTRRDSFITSSWDDTVKLWTVDR-PTSVRT-FKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM-GSTMIIP 189 (317)
Q Consensus 113 ~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~ 189 (317)
.|+...++++++|+.|+.+..||++. ++.+.. .+.|...|.+|.-+|..+.++++|+.|-.|++||.|+. +++.. .
T Consensus 172 ~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~-~ 250 (339)
T KOG0280|consen 172 KFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK-A 250 (339)
T ss_pred ecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc-C
Confidence 99988888999999999999999983 333333 45688889999999988999999999999999999965 44443 3
Q ss_pred cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCcc----EEEEecCCCceeEEEecCCCCeeEEeee-cCCeEE-E
Q 021121 190 AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVP----IAVLNGHGYAVRKVKFSPHRRNLLASCS-YDMTVC-L 263 (317)
Q Consensus 190 ~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~-v 263 (317)
...+.|..+.++|.....++.+..-.-.+|-+....... ......|.+-+..-.|..... +|++++ .|+.++ +
T Consensus 251 ~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~-~lATCsFYDk~~~~~ 329 (339)
T KOG0280|consen 251 KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDS-FLATCSFYDKKIRQL 329 (339)
T ss_pred ccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccc-eeeeeeccccceeee
Confidence 355889999999955444444444445777777654322 233456666666666754433 688765 556544 6
Q ss_pred Eecccc
Q 021121 264 WDFMVE 269 (317)
Q Consensus 264 wd~~~~ 269 (317)
|-.-++
T Consensus 330 Wl~~t~ 335 (339)
T KOG0280|consen 330 WLHITG 335 (339)
T ss_pred eeeccC
Confidence 654443
No 248
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.66 E-value=3.4e-14 Score=106.36 Aligned_cols=151 Identities=17% Similarity=0.291 Sum_probs=101.6
Q ss_pred EEEEEecCCCCeEEEEeC---------CCeEEEEeCCCC-Cceeeecc-CccceEEEEecCCCCcEEEEE--ecCCcEEE
Q 021121 153 YNATWNPRHSDVFCSASG---------DCTLRIWDVREM-GSTMIIPA-HEFEILACDWNKYDDCLIASA--SVDKSIKI 219 (317)
Q Consensus 153 ~~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~-~~~~~~~~-~~~~v~~i~~~~~~~~~l~~~--~~d~~i~v 219 (317)
..+.|+|++..+++.... -|...+|.++.. .+...+.. ...+|.+++|+| +++.+++. ..+..|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence 457788884444444431 233555555332 33333332 345799999999 77776544 45679999
Q ss_pred EEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeec---CCeEEEEecccccceeeeeecccceeEeEEEEeccCCeE
Q 021121 220 WDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSY---DMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLL 296 (317)
Q Consensus 220 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 296 (317)
||++. + ++..+. ...+..+.|+|+|+ +|++++. .|.|.+||+++.+ .+.... | ..++.++|+|+ +++|
T Consensus 88 yd~~~-~-~i~~~~--~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~~~-~i~~~~-~-~~~t~~~WsPd-Gr~~ 158 (194)
T PF08662_consen 88 YDVKG-K-KIFSFG--TQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRKKK-KISTFE-H-SDATDVEWSPD-GRYL 158 (194)
T ss_pred EcCcc-c-EeEeec--CCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCCCE-Eeeccc-c-CcEEEEEEcCC-CCEE
Confidence 99972 3 344443 45778999999999 5666653 4679999999765 334433 3 34789999999 7888
Q ss_pred EEeec------CCcEEEEecCCC
Q 021121 297 ASTGW------DELVYVWQQGMD 313 (317)
Q Consensus 297 ~s~~~------dg~i~~w~~~~~ 313 (317)
+++.. |+.++||++...
T Consensus 159 ~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 159 ATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEEEeccceeccccEEEEEecCe
Confidence 87763 788999998754
No 249
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=2.9e-13 Score=114.97 Aligned_cols=237 Identities=11% Similarity=0.110 Sum_probs=141.8
Q ss_pred eEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC--eEEEEEeCCCCCCCCceeeccCCcceEEEEEe
Q 021121 38 RVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG--SVKIYDTALPPTANPIRSLHEHTREVHSADYN 115 (317)
Q Consensus 38 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 115 (317)
.|.++|.+..+ .+.+ ......+....|+|||..++.+...++ .|.+||+..++ ...+..+ .+......|+
T Consensus 199 ~l~i~d~dG~~--~~~l--~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~-~~~lt~~---~g~~~~~~wS 270 (448)
T PRK04792 199 QLMIADYDGYN--EQML--LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV-REKVTSF---PGINGAPRFS 270 (448)
T ss_pred EEEEEeCCCCC--ceEe--ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC-eEEecCC---CCCcCCeeEC
Confidence 67777766544 2222 245667889999999964444443344 57777876541 1122222 2334468999
Q ss_pred cCCCCEEEEEcCCCE--EEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCC--eEEEEeCCCCCceeeeccC
Q 021121 116 PTRRDSFITSSWDDT--VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDC--TLRIWDVREMGSTMIIPAH 191 (317)
Q Consensus 116 ~~~~~~l~~~~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~ 191 (317)
|+|+.++++.+.+|. |.++|+++++. ..+..+........|+|++..++++...++ .|+++|+.+++... +...
T Consensus 271 PDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~ 348 (448)
T PRK04792 271 PDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFE 348 (448)
T ss_pred CCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecC
Confidence 999855556666664 77888887654 344445555678899999444444444444 46677877665433 2212
Q ss_pred ccceEEEEecCCCCcEEEEEec-CC--cEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCe--EEEEec
Q 021121 192 EFEILACDWNKYDDCLIASASV-DK--SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMT--VCLWDF 266 (317)
Q Consensus 192 ~~~v~~i~~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--i~vwd~ 266 (317)
.......+|+| +++.++..+. ++ .|.++|+.+++ ...+.... ......|+|+++.++++...++. +.+++.
T Consensus 349 g~~~~~~~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~g~--~~~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 349 GEQNLGGSITP-DGRSMIMVNRTNGKFNIARQDLETGA--MQVLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred CCCCcCeeECC-CCCEEEEEEecCCceEEEEEECCCCC--eEEccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 22234578999 8877776654 34 45667777654 23333221 22345899999976666655554 666665
Q ss_pred ccccceeeeeecccceeEeEEEEe
Q 021121 267 MVEDALVGRYDHHTEFAVGVDMSV 290 (317)
Q Consensus 267 ~~~~~~~~~~~~~~~~v~~~~~~~ 290 (317)
. ++ ....+..+.+.+...+|+|
T Consensus 425 ~-G~-~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 425 D-GR-FKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred C-CC-ceEECcCCCCCcCCCccCC
Confidence 3 32 3445555556677888887
No 250
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=5.8e-13 Score=112.27 Aligned_cols=241 Identities=13% Similarity=0.133 Sum_probs=141.9
Q ss_pred ceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCC--eEEEEEcCC--eEEEEEeCCCCCCCCceeeccCCcceEEE
Q 021121 37 GRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDS--LLIAAVADG--SVKIYDTALPPTANPIRSLHEHTREVHSA 112 (317)
Q Consensus 37 g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg--~i~v~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (317)
+.|.+.|.+..+ ...+. ........-+|+|||.. ++++...+| .|.+.++..+ ....+ ....+.....
T Consensus 165 ~~l~~~d~dG~~--~~~lt--~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g-~~~~l---t~~~g~~~~p 236 (428)
T PRK01029 165 GELWSVDYDGQN--LRPLT--QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP-AGKKI---LALQGNQLMP 236 (428)
T ss_pred ceEEEEcCCCCC--ceEcc--cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCC-CceEe---ecCCCCccce
Confidence 467777766554 23332 23445667799999864 333554454 4666666644 22222 2234445568
Q ss_pred EEecCCCCEEEEEcCCC----EEEEEEcCCC---ceeEEeeccccceEEEEEecCCCCeEE-EEeCCCeEEEE--eCCC-
Q 021121 113 DYNPTRRDSFITSSWDD----TVKLWTVDRP---TSVRTFKEHAYCVYNATWNPRHSDVFC-SASGDCTLRIW--DVRE- 181 (317)
Q Consensus 113 ~~~~~~~~~l~~~~~dg----~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~--d~~~- 181 (317)
.|+|||+.++++...+| .+..|++..+ +...............+|+|+ ++.|+ +...+|...+| ++..
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPD-G~~Laf~s~~~g~~~ly~~~~~~~ 315 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPD-GTRLVFVSNKDGRPRIYIMQIDPE 315 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCC-CCEEEEEECCCCCceEEEEECccc
Confidence 99999984555543333 3445776653 222222222234467899999 55444 44456654555 4432
Q ss_pred CCceeeeccCccceEEEEecCCCCcEEEEEecC---CcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeec-
Q 021121 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVD---KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSY- 257 (317)
Q Consensus 182 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~- 257 (317)
+.....+......+....|+| +++.|+..+.+ ..|.+||+.+++. ..+......+....|+|+++.+++++..
T Consensus 316 g~~~~~lt~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~g~~--~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~ 392 (428)
T PRK01029 316 GQSPRLLTKKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLATGRD--YQLTTSPENKESPSWAIDSLHLVYSAGNS 392 (428)
T ss_pred ccceEEeccCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCCCCe--EEccCCCCCccceEECCCCCEEEEEECCC
Confidence 233444444445667889999 88888766543 3699999987653 3343333456789999999965555543
Q ss_pred -CCeEEEEecccccceeeeeecccceeEeEEEEec
Q 021121 258 -DMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVL 291 (317)
Q Consensus 258 -d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 291 (317)
...|.++|+..++. ..+....+.+...+|+|-
T Consensus 393 g~~~L~~vdl~~g~~--~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 393 NESELYLISLITKKT--RKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred CCceEEEEECCCCCE--EEeecCCCcccCceecCC
Confidence 34688888877652 223333445667788874
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.62 E-value=1.8e-13 Score=112.21 Aligned_cols=189 Identities=15% Similarity=0.172 Sum_probs=153.1
Q ss_pred CCCEEEEEcCCCEEEEEEcCCCceeEEeec---cccceEEEEEe------c-------------CCCCeEEEEeCCCeEE
Q 021121 118 RRDSFITSSWDDTVKLWTVDRPTSVRTFKE---HAYCVYNATWN------P-------------RHSDVFCSASGDCTLR 175 (317)
Q Consensus 118 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~------~-------------~~~~~l~~~~~dg~i~ 175 (317)
+..+++....||.+++||...++....+.. -.+..++..|. | .+..+++-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 334899999999999999999887776642 12334444442 2 1356788899999999
Q ss_pred EEeCCCCCceeeec--cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEE
Q 021121 176 IWDVREMGSTMIIP--AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLA 253 (317)
Q Consensus 176 i~d~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 253 (317)
+|+...++....+. .|.+.|.++.++. +-..|.+++.|+.+..|+..... ........+..+.+++.+||+. +++
T Consensus 84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~-~~~~~~~~~~~~~sl~is~D~~-~l~ 160 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKV-IIRIWKEQKPLVSSLCISPDGK-ILL 160 (541)
T ss_pred EEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccce-eeeeeccCCCccceEEEcCCCC-EEE
Confidence 99999988777665 6888999999998 88899999999999999998855 4677777888899999999998 687
Q ss_pred eeecCCeEEEEecccccceeeeeecccceeEeEEEEec-----cCCeEEEeecCCcEEEEecCC
Q 021121 254 SCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVL-----VEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 254 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~s~~~dg~i~~w~~~~ 312 (317)
+++ +.|++||+++.+ ++..+.+|.++|.+++|... +..+|.+...+..+.+|-+..
T Consensus 161 ~as--~~ik~~~~~~ke-vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKE-VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ecc--ceEEEEEccCce-EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 775 679999999987 78899999999999999876 344666666788889998876
No 252
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=2.2e-12 Score=105.31 Aligned_cols=275 Identities=13% Similarity=0.209 Sum_probs=168.5
Q ss_pred CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEE-----Ec
Q 021121 7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAA-----VA 81 (317)
Q Consensus 7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-----~~ 81 (317)
..++...++|+ ++++.+... +..+.|++..... .+.+.... .++++.|+|-+ .+|.+= ..
T Consensus 34 ~~~~~v~~~S~--~G~lfA~~~-------~~~v~i~~~~~~~----~~lt~~~~-~~~~L~fSP~g-~yL~T~e~~~i~~ 98 (566)
T KOG2315|consen 34 SRPCNVFAYSN--NGRLFAYSD-------NQVVKVFEIATLK----VVLCVELK-KTYDLLFSPKG-NYLLTWEPWAIYG 98 (566)
T ss_pred CCcceeEEEcC--CCcEEEEEc-------CCeEEEEEccCCc----EEEEeccc-eeeeeeecccc-ccccccccccccc
Confidence 34456788888 677777665 6699999988765 22222333 79999999988 466541 11
Q ss_pred -----CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEE
Q 021121 82 -----DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNAT 156 (317)
Q Consensus 82 -----dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~ 156 (317)
.-.+.+|++++. .....+......-++..|+.|.. +++=-..+.+.+|++.+.+.+.. +-|...++.+.
T Consensus 99 ~~~~~~pn~~v~~vet~---~~~s~~q~k~Q~~W~~qfs~dEs--l~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~ 172 (566)
T KOG2315|consen 99 PKNASNPNVLVYNVETG---VQRSQIQKKMQNGWVPQFSIDES--LAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLS 172 (566)
T ss_pred CCCCCCCceeeeeeccc---eehhheehhhhcCcccccccchh--hhhhhhcceEEEEecCCccceee-eeeccceeeEE
Confidence 234779998863 33333332222226788888765 33333456788888765322111 11233344444
Q ss_pred Eec----------------------------------------------------CCCCeEEEEeC-----------CCe
Q 021121 157 WNP----------------------------------------------------RHSDVFCSASG-----------DCT 173 (317)
Q Consensus 157 ~~~----------------------------------------------------~~~~~l~~~~~-----------dg~ 173 (317)
++| .+..+|+.++. +.+
T Consensus 173 lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~ 252 (566)
T KOG2315|consen 173 LSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQT 252 (566)
T ss_pred ecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccce
Confidence 444 32223322221 123
Q ss_pred EEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEE--EecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCee
Q 021121 174 LRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIAS--ASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNL 251 (317)
Q Consensus 174 i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 251 (317)
+++++++..+....+ ...++|.++.|+| +++.+++ |-.--.+.+||++.. ++..+. .++=+++-|+|.|+.
T Consensus 253 Lyll~t~g~s~~V~L-~k~GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr~~--~v~df~--egpRN~~~fnp~g~i- 325 (566)
T KOG2315|consen 253 LYLLATQGESVSVPL-LKEGPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLRGK--PVFDFP--EGPRNTAFFNPHGNI- 325 (566)
T ss_pred EEEEEecCceEEEec-CCCCCceEEEECC-CCCEEEEEEecccceEEEEcCCCC--EeEeCC--CCCccceEECCCCCE-
Confidence 455554422222222 2467899999999 7765554 445568999999852 344443 456688999999994
Q ss_pred EEeeec---CCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeec------CCcEEEEecCCC
Q 021121 252 LASCSY---DMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGW------DELVYVWQQGMD 313 (317)
Q Consensus 252 l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~------dg~i~~w~~~~~ 313 (317)
|+.++. -|.|.|||+.+.+ ++..+.... -+-+.|+|+ +.+++|+.. |+.++||+....
T Consensus 326 i~lAGFGNL~G~mEvwDv~n~K-~i~~~~a~~--tt~~eW~Pd-Ge~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 326 ILLAGFGNLPGDMEVWDVPNRK-LIAKFKAAN--TTVFEWSPD-GEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred EEEeecCCCCCceEEEeccchh-hccccccCC--ceEEEEcCC-CcEEEEEeccccEEecCCeEEEEecCc
Confidence 555543 4789999999855 555655433 456799999 778877763 788999998653
No 253
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=2.1e-11 Score=94.91 Aligned_cols=272 Identities=11% Similarity=0.111 Sum_probs=180.8
Q ss_pred CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEc---CCeEEEEEeCCC-CCCCCceeeccCCcceEE
Q 021121 36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVA---DGSVKIYDTALP-PTANPIRSLHEHTREVHS 111 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~v~~~~~~-~~~~~~~~~~~~~~~v~~ 111 (317)
+.-|++|++++....+.........+.++-|+|+|+. +.|.++.. +|.|..|.++.. .....+........+-+-
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~-~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQ-RHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCC-CEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 5689999999666566666666788889999999997 46666654 478889988753 122222222222334478
Q ss_pred EEEecCCCCEEEEE-cCCCEEEEEEcCC-CceeE--Eeeccccc----------eEEEEEecCCCCeEEEEeC-CCeEEE
Q 021121 112 ADYNPTRRDSFITS-SWDDTVKLWTVDR-PTSVR--TFKEHAYC----------VYNATWNPRHSDVFCSASG-DCTLRI 176 (317)
Q Consensus 112 ~~~~~~~~~~l~~~-~~dg~v~iwd~~~-~~~~~--~~~~~~~~----------v~~~~~~~~~~~~l~~~~~-dg~i~i 176 (317)
++++++++ +++++ -..|.|.++-+++ |.... ....|.+. +....+.|+ ++++++... .-.|.+
T Consensus 94 vsvd~~g~-~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~-~~~l~v~DLG~Dri~~ 171 (346)
T COG2706 94 VSVDEDGR-FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPD-GRYLVVPDLGTDRIFL 171 (346)
T ss_pred EEECCCCC-EEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCC-CCEEEEeecCCceEEE
Confidence 99999998 66655 4568999999865 32211 12224433 888999999 777766543 346999
Q ss_pred EeCCCCCceeeec---cCccceEEEEecCCCCcEEEEEe-cCCcEEEEEccCCCccEEEEec---------CCCceeEEE
Q 021121 177 WDVREMGSTMIIP---AHEFEILACDWNKYDDCLIASAS-VDKSIKIWDVRNYRVPIAVLNG---------HGYAVRKVK 243 (317)
Q Consensus 177 ~d~~~~~~~~~~~---~~~~~v~~i~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~---------~~~~v~~~~ 243 (317)
|++..++....-. ......+.|.|+| ++++..... -+++|-+|........+..++. .......|.
T Consensus 172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh 250 (346)
T COG2706 172 YDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH 250 (346)
T ss_pred EEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence 9999765432211 3445678999999 887766554 5889999998874322333322 134567899
Q ss_pred ecCCCCeeEEeee-cCCeEEEEecccccc---eeeeeecccceeEeEEEEeccCCeEEEee-cCCcEEEEecCCC
Q 021121 244 FSPHRRNLLASCS-YDMTVCLWDFMVEDA---LVGRYDHHTEFAVGVDMSVLVEGLLASTG-WDELVYVWQQGMD 313 (317)
Q Consensus 244 ~~~~~~~~l~~~~-~d~~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~~w~~~~~ 313 (317)
.+|+|+ +|.++. ....|.+|.+..... .......+....+...+++. +++|++++ .+..|.+|.++..
T Consensus 251 is~dGr-FLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~-g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 251 ISPDGR-FLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPS-GRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred ECCCCC-EEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCC-CCEEEEEccCCCcEEEEEEcCC
Confidence 999999 455544 345788887765532 22333334445788999998 66666665 4567999988764
No 254
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.60 E-value=2.3e-12 Score=109.51 Aligned_cols=214 Identities=11% Similarity=0.059 Sum_probs=136.3
Q ss_pred eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCC---CEEEEEEcCCCceeEEeeccccceEEEEEecC
Q 021121 84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD---DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR 160 (317)
Q Consensus 84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (317)
.|.++|... .....+..+...+....|+|+++ .++.+..+ ..|++||+.+++... +..+...+.+++|+|+
T Consensus 171 ~l~~~d~~g----~~~~~l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spD 244 (417)
T TIGR02800 171 ELQVADYDG----ANPQTITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPD 244 (417)
T ss_pred eEEEEcCCC----CCCEEeecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCC
Confidence 567777643 23344455667788999999998 66655433 479999998876543 3335556778999999
Q ss_pred CCCeEEEEeCCC--eEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEec-CC--cEEEEEccCCCccEEEEecC
Q 021121 161 HSDVFCSASGDC--TLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASV-DK--SIKIWDVRNYRVPIAVLNGH 235 (317)
Q Consensus 161 ~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~ 235 (317)
+..++++.+.++ .|++||+.+++. ..+..+........|+| +++.|+..+. ++ .|+++|+.+.+ ...+..+
T Consensus 245 g~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~--~~~l~~~ 320 (417)
T TIGR02800 245 GSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGE--VRRLTFR 320 (417)
T ss_pred CCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCC--EEEeecC
Confidence 444555555544 588899887654 33333444455778999 8887766554 33 57778877654 3444445
Q ss_pred CCceeEEEecCCCCeeEEeeecCC---eEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecC-C--cEEEEe
Q 021121 236 GYAVRKVKFSPHRRNLLASCSYDM---TVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWD-E--LVYVWQ 309 (317)
Q Consensus 236 ~~~v~~~~~~~~~~~~l~~~~~d~---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g--~i~~w~ 309 (317)
........|+|+++. ++.++.++ .|.+||+.++.. ..+... .......|+|+ ++.|+..+.+ + .+++.+
T Consensus 321 ~~~~~~~~~spdg~~-i~~~~~~~~~~~i~~~d~~~~~~--~~l~~~-~~~~~p~~spd-g~~l~~~~~~~~~~~l~~~~ 395 (417)
T TIGR02800 321 GGYNASPSWSPDGDL-IAFVHREGGGFNIAVMDLDGGGE--RVLTDT-GLDESPSFAPN-GRMILYATTRGGRGVLGLVS 395 (417)
T ss_pred CCCccCeEECCCCCE-EEEEEccCCceEEEEEeCCCCCe--EEccCC-CCCCCceECCC-CCEEEEEEeCCCcEEEEEEE
Confidence 556778899999984 66555554 788889877542 222222 22455689999 5555555443 2 455555
Q ss_pred cCC
Q 021121 310 QGM 312 (317)
Q Consensus 310 ~~~ 312 (317)
.+.
T Consensus 396 ~~g 398 (417)
T TIGR02800 396 TDG 398 (417)
T ss_pred CCC
Confidence 443
No 255
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=1.5e-12 Score=106.22 Aligned_cols=255 Identities=17% Similarity=0.231 Sum_probs=166.6
Q ss_pred eEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCC-CeEEE-----EEcCCe
Q 021121 11 YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHD-SLLIA-----AVADGS 84 (317)
Q Consensus 11 ~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~-----~~~dg~ 84 (317)
.+.+|++ +..+++-.. .+.+++|++......... -|...|+.+.++|-++ ..+|+ ++.-+.
T Consensus 129 W~~qfs~--dEsl~arlv-------~nev~f~~~~~f~~~~~k----l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~ 195 (566)
T KOG2315|consen 129 WVPQFSI--DESLAARLV-------SNEVQFYDLGSFKTIQHK----LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPAS 195 (566)
T ss_pred ccccccc--chhhhhhhh-------cceEEEEecCCccceeee----eeccceeeEEecCCCCCceEEEEccCCCCCCcE
Confidence 4678888 444444433 568999999875432222 2567899999998743 33443 344578
Q ss_pred EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCC-----------CEEEEEEcCCCceeEEeeccccceE
Q 021121 85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD-----------DTVKLWTVDRPTSVRTFKEHAYCVY 153 (317)
Q Consensus 85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----------g~v~iwd~~~~~~~~~~~~~~~~v~ 153 (317)
|+||.+........+..-.-....=..+.|++-|..+|+.++.| .++++.+++.....-.+. ..++|.
T Consensus 196 vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVh 274 (566)
T KOG2315|consen 196 VRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVH 274 (566)
T ss_pred EEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCce
Confidence 99999874322222222111233445688998887666655432 468888887434443443 578999
Q ss_pred EEEEecCCCCeEEE--EeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecC---CcEEEEEccCCCcc
Q 021121 154 NATWNPRHSDVFCS--ASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVD---KSIKIWDVRNYRVP 228 (317)
Q Consensus 154 ~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~ 228 (317)
++.|+|+ +.-+++ |-.-.++.+||++ +.++..+ .+++-+++-|+| .+++++.++.+ |.+-+||..+.+ .
T Consensus 275 dv~W~~s-~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K-~ 348 (566)
T KOG2315|consen 275 DVTWSPS-GREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRK-L 348 (566)
T ss_pred EEEECCC-CCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchh-h
Confidence 9999999 544443 4456789999987 4555555 356678999999 89998888765 689999999854 4
Q ss_pred EEEEecCCCceeEEEecCCCCeeEEeee------cCCeEEEEecccccceeeeeecccceeEeEEEEec
Q 021121 229 IAVLNGHGYAVRKVKFSPHRRNLLASCS------YDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVL 291 (317)
Q Consensus 229 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 291 (317)
+..+.... -+-+.|+|+|++ ++|+. -|+.++||+..... +..... ......+.|-|-
T Consensus 349 i~~~~a~~--tt~~eW~PdGe~-flTATTaPRlrvdNg~KiwhytG~~-l~~~~f--~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 349 IAKFKAAN--TTVFEWSPDGEY-FLTATTAPRLRVDNGIKIWHYTGSL-LHEKMF--KSELLQVEWRPF 411 (566)
T ss_pred ccccccCC--ceEEEEcCCCcE-EEEEeccccEEecCCeEEEEecCce-eehhhh--hHhHhheeeeec
Confidence 66666544 356899999995 65555 37889999976432 211111 114677788765
No 256
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.56 E-value=4.1e-11 Score=109.16 Aligned_cols=290 Identities=14% Similarity=0.202 Sum_probs=184.2
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCC--CCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSP--AAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG 83 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 83 (317)
....|.++.|-++ ...++++.. +|.|.+...+. .......+. .-..+|.+++||||.+ +|+..+.++
T Consensus 74 ~~~~ivs~~yl~d-~~~l~~~~~-------~Gdi~~~~~~~~~~~~~~E~VG--~vd~GI~a~~WSPD~E-lla~vT~~~ 142 (928)
T PF04762_consen 74 PNDKIVSFQYLAD-SESLCIALA-------SGDIILVREDPDPDEDEIEIVG--SVDSGILAASWSPDEE-LLALVTGEG 142 (928)
T ss_pred CCCcEEEEEeccC-CCcEEEEEC-------CceEEEEEccCCCCCceeEEEE--EEcCcEEEEEECCCcC-EEEEEeCCC
Confidence 3467889999996 445555555 78898883322 221233333 4567899999999985 888888888
Q ss_pred eEEEEEeCCC------------CCC--------CCceeecc------------------------CCcceEEEEEecCCC
Q 021121 84 SVKIYDTALP------------PTA--------NPIRSLHE------------------------HTREVHSADYNPTRR 119 (317)
Q Consensus 84 ~i~v~~~~~~------------~~~--------~~~~~~~~------------------------~~~~v~~~~~~~~~~ 119 (317)
++.+..-.-. +.. +....+++ +...-..++|..||.
T Consensus 143 ~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~ 222 (928)
T PF04762_consen 143 NLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGE 222 (928)
T ss_pred EEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCc
Confidence 8877642211 000 00001100 233456789999998
Q ss_pred CEEEEEcC---C---CEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeC---CCeEEEEeCCCCCceee---
Q 021121 120 DSFITSSW---D---DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASG---DCTLRIWDVREMGSTMI--- 187 (317)
Q Consensus 120 ~~l~~~~~---d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~--- 187 (317)
++++.+- . ..++||+-+ |........-.+--.+++|.|. ++++++.-. ...|.+|.-+ |-.-..
T Consensus 223 -yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPs-G~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l 298 (928)
T PF04762_consen 223 -YFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPS-GNLIASSQRLPDRHDVVFFERN-GLRHGEFTL 298 (928)
T ss_pred -EEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCC-CCEEEEEEEcCCCcEEEEEecC-CcEeeeEec
Confidence 8877653 2 579999965 5554444444444567899999 888887654 3457777733 322222
Q ss_pred -eccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEE-Ee-cCCCceeEEEecCCCCeeEEeeecCCeEEEE
Q 021121 188 -IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAV-LN-GHGYAVRKVKFSPHRRNLLASCSYDMTVCLW 264 (317)
Q Consensus 188 -~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vw 264 (317)
+......+..+.|++ ++..||....|. |.+|-..+..-.++. +. .....+..+.|+|.....|.....+|.+..+
T Consensus 299 ~~~~~~~~v~~l~Wn~-ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~ 376 (928)
T PF04762_consen 299 RFDPEEEKVIELAWNS-DSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIY 376 (928)
T ss_pred CCCCCCceeeEEEECC-CCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEE
Confidence 223456799999999 999999987655 999998875422222 22 1233455699999877667767666666555
Q ss_pred ecc----ccc-------ceeee-----------------------eecccceeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121 265 DFM----VED-------ALVGR-----------------------YDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ 310 (317)
Q Consensus 265 d~~----~~~-------~~~~~-----------------------~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~ 310 (317)
++. .+. ..+.. .-....+|.+++|+++ ...+++-..||.|.+|..
T Consensus 377 ~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~-~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 377 DFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPS-NSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred EEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCC-CCeEEEEECCCCEEEEEe
Confidence 432 110 00100 1112467999999998 556888889999999997
Q ss_pred CCC
Q 021121 311 GMD 313 (317)
Q Consensus 311 ~~~ 313 (317)
...
T Consensus 456 ~~~ 458 (928)
T PF04762_consen 456 DLK 458 (928)
T ss_pred cCC
Confidence 654
No 257
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=7e-12 Score=106.82 Aligned_cols=215 Identities=13% Similarity=0.082 Sum_probs=130.9
Q ss_pred eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEc-CC--CEEEEEEcCCCceeEEeeccccceEEEEEecC
Q 021121 84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSS-WD--DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR 160 (317)
Q Consensus 84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (317)
.|.++|.+.. ....+..+...+....|+|+|+ .|+..+ .+ ..|.+||+.+++... +....+......|+|+
T Consensus 180 ~l~~~d~~g~----~~~~l~~~~~~~~~p~wSpDG~-~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpD 253 (430)
T PRK00178 180 TLQRSDYDGA----RAVTLLQSREPILSPRWSPDGK-RIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPD 253 (430)
T ss_pred EEEEECCCCC----CceEEecCCCceeeeeECCCCC-EEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCC
Confidence 3666666532 2344445677889999999998 555443 32 469999998876543 3333444567899999
Q ss_pred CCCeEEEEeCCC--eEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEec-CC--cEEEEEccCCCccEEEEecC
Q 021121 161 HSDVFCSASGDC--TLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASV-DK--SIKIWDVRNYRVPIAVLNGH 235 (317)
Q Consensus 161 ~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~ 235 (317)
+..++++...+| .|+++|+.+++.. .+..+........|+| +++.++..+. ++ .|+++|+.+++. ..+...
T Consensus 254 G~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~--~~lt~~ 329 (430)
T PRK00178 254 GSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRA--ERVTFV 329 (430)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCE--EEeecC
Confidence 444444555555 5888899876543 3444455566788999 7776665553 33 577778766542 222222
Q ss_pred CCceeEEEecCCCCeeEEeeecCC--eEEEEecccccceeeeeecccceeEeEEEEeccCCeEE-EeecCC--cEEEEec
Q 021121 236 GYAVRKVKFSPHRRNLLASCSYDM--TVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLA-STGWDE--LVYVWQQ 310 (317)
Q Consensus 236 ~~~v~~~~~~~~~~~~l~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~dg--~i~~w~~ 310 (317)
........|+|+++.++++...++ .|.++|+.+++.. .+.. ........|+|+ ++.++ +...+| .|.++++
T Consensus 330 ~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~--~lt~-~~~~~~p~~spd-g~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 330 GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR--ILTD-TSLDESPSVAPN-GTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE--EccC-CCCCCCceECCC-CCEEEEEEecCCceEEEEEEC
Confidence 223346789999996444443343 5788898876532 2221 122335689999 55554 444444 4556665
Q ss_pred CC
Q 021121 311 GM 312 (317)
Q Consensus 311 ~~ 312 (317)
+.
T Consensus 406 ~g 407 (430)
T PRK00178 406 NG 407 (430)
T ss_pred CC
Confidence 44
No 258
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.55 E-value=8.5e-13 Score=101.51 Aligned_cols=246 Identities=17% Similarity=0.173 Sum_probs=179.1
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD 137 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 137 (317)
++.+.+++...-|.. .-+++.+.|.+++||--....+.-+- ....-..+++++.+.++.. .|+.|-..|++.-+.+.
T Consensus 22 G~~d~vn~~~l~~~e-~gv~~~s~drtvrv~lkrds~q~wps-I~~~mP~~~~~~~y~~e~~-~L~vg~~ngtvtefs~s 98 (404)
T KOG1409|consen 22 GSQDDVNAAILIPKE-EGVISVSEDRTVRVWLKRDSGQYWPS-IYHYMPSPCSAMEYVSESR-RLYVGQDNGTVTEFALS 98 (404)
T ss_pred CchhhhhhheeccCC-CCeEEccccceeeeEEeccccccCch-hhhhCCCCceEeeeeccce-EEEEEEecceEEEEEhh
Confidence 566677777777765 47889999999999964432221111 1123467889999999877 89999999999988654
Q ss_pred ----CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEec
Q 021121 138 ----RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASV 213 (317)
Q Consensus 138 ----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~ 213 (317)
.....+.+..|..++..+-|+-. ...+++.+.|..+.---.+.+..+-.+. ......++.+.- .+...|..
T Consensus 99 edfnkm~~~r~~~~h~~~v~~~if~~~-~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~---~~~fvGd~ 173 (404)
T KOG1409|consen 99 EDFNKMTFLKDYLAHQARVSAIVFSLT-HEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDA---LYAFVGDH 173 (404)
T ss_pred hhhhhcchhhhhhhhhcceeeEEecCC-ceeEEEeccccceEEEeeccCCcccceE-eeccCCCCceee---EEEEeccc
Confidence 34556677789999999999987 7888899988877554444443332221 111112222221 14455555
Q ss_pred CCcEEEEEccCC-CccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEecc
Q 021121 214 DKSIKIWDVRNY-RVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLV 292 (317)
Q Consensus 214 d~~i~v~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 292 (317)
.|.|..-.+... -.++..+.+|...+++++|.|..+ +|.+|..|..+.+||+...+.....+.+|...|..++..+.
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~- 251 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQH- 251 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc-EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhh-
Confidence 666665554432 235778899999999999999887 89999999999999998887777888999999999988776
Q ss_pred CCeEEEeecCCcEEEEecCCC
Q 021121 293 EGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 293 ~~~l~s~~~dg~i~~w~~~~~ 313 (317)
-..+.+++.||.|.+|+++-.
T Consensus 252 t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 252 TRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred heeeeeccCCCeEEEEeccce
Confidence 779999999999999999753
No 259
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=7.3e-12 Score=105.67 Aligned_cols=228 Identities=10% Similarity=0.100 Sum_probs=132.6
Q ss_pred cceeEEEEecCCCCe-EEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC---
Q 021121 8 FNGYSVKFSPFYESR-LAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG--- 83 (317)
Q Consensus 8 ~~v~~~~~~p~~~~~-~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--- 83 (317)
....+-+|||++... ++...... +...|++.++..+. ...+. ...+.....+|+|||..++++...+|
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~----g~~~I~~~~l~~g~--~~~lt--~~~g~~~~p~wSPDG~~Laf~s~~~g~~d 256 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKL----GVPKIFLGSLENPA--GKKIL--ALQGNQLMPTFSPRKKLLAFISDRYGNPD 256 (428)
T ss_pred CCcccceEccCCCceEEEEEEccC----CCceEEEEECCCCC--ceEee--cCCCCccceEECCCCCEEEEEECCCCCcc
Confidence 345567899964332 22233321 13467888887654 23333 23445567899999964444443333
Q ss_pred -eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEE--EcCC-CceeEEeeccccceEEEEEec
Q 021121 84 -SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLW--TVDR-PTSVRTFKEHAYCVYNATWNP 159 (317)
Q Consensus 84 -~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw--d~~~-~~~~~~~~~~~~~v~~~~~~~ 159 (317)
.+..|++..+...........+.+......|+|||+.++++...+|...+| ++.. +.....+......+....|+|
T Consensus 257 i~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP 336 (428)
T PRK01029 257 LFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP 336 (428)
T ss_pred eeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECC
Confidence 344466654311222222323333446789999998444455556655555 4432 233444444455677889999
Q ss_pred CCCCeEEEEeC-C--CeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEec---CCcEEEEEccCCCccEEEEe
Q 021121 160 RHSDVFCSASG-D--CTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASV---DKSIKIWDVRNYRVPIAVLN 233 (317)
Q Consensus 160 ~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~ 233 (317)
+ ++.|+..+. + ..|.+||+.+++... +......+....|+| +++.|+.... ...|+++|+...+ ...+.
T Consensus 337 D-G~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSp-DG~~L~f~~~~~g~~~L~~vdl~~g~--~~~Lt 411 (428)
T PRK01029 337 D-GKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAI-DSLHLVYSAGNSNESELYLISLITKK--TRKIV 411 (428)
T ss_pred C-CCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCC--EEEee
Confidence 9 665555443 3 469999998876543 332334567899999 8877765432 3468888987654 23333
Q ss_pred cCCCceeEEEecCCC
Q 021121 234 GHGYAVRKVKFSPHR 248 (317)
Q Consensus 234 ~~~~~v~~~~~~~~~ 248 (317)
...+.+...+|+|..
T Consensus 412 ~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 412 IGSGEKRFPSWGAFP 426 (428)
T ss_pred cCCCcccCceecCCC
Confidence 344556778888754
No 260
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.53 E-value=1.2e-13 Score=116.27 Aligned_cols=251 Identities=19% Similarity=0.317 Sum_probs=181.5
Q ss_pred cceeEEEEecCCC-CeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEE
Q 021121 8 FNGYSVKFSPFYE-SRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVK 86 (317)
Q Consensus 8 ~~v~~~~~~p~~~-~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 86 (317)
-.|-.+.|+|+.. ...+++.+ ...-.+|++........++...+|..+|+.+.|+|+.+..+++++.|..+.
T Consensus 68 w~vad~qws~h~a~~~wiVsts-------~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh 140 (1081)
T KOG0309|consen 68 WQVADVQWSPHPAKPYWIVSTS-------NQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVH 140 (1081)
T ss_pred chhcceecccCCCCceeEEecC-------cchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccce
Confidence 4456788998653 44555555 557889999887766777788899999999999999989999999999999
Q ss_pred EEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC-ceeEEeeccccceEEEEEecCCCCeE
Q 021121 87 IYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP-TSVRTFKEHAYCVYNATWNPRHSDVF 165 (317)
Q Consensus 87 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l 165 (317)
.||++.. ..++.....-......++|+-..+ .+++.+....|.+||.+.+ .++..+++|...++.++|+..-...+
T Consensus 141 ~wd~rSp--~~p~ys~~~w~s~asqVkwnyk~p-~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~ 217 (1081)
T KOG0309|consen 141 AWDMRSP--HRPFYSTSSWRSAASQVKWNYKDP-NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEI 217 (1081)
T ss_pred eeeccCC--CcceeeeecccccCceeeecccCc-chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhh
Confidence 9999865 244555554556677899987777 4556666778999999876 56778888999999999987656678
Q ss_pred EEEeCCCeEEEEeCCCCCcee-eeccCccceEEEEecCCCCcEEEE----------EecCCcEEEEEccCCCccEEEEec
Q 021121 166 CSASGDCTLRIWDVREMGSTM-IIPAHEFEILACDWNKYDDCLIAS----------ASVDKSIKIWDVRNYRVPIAVLNG 234 (317)
Q Consensus 166 ~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~~----------~~~d~~i~v~d~~~~~~~~~~~~~ 234 (317)
.+++.||+|+.||........ .......++..-++-|....+++- --.+..-..|+..+...++..+.+
T Consensus 218 ~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G 297 (1081)
T KOG0309|consen 218 MSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG 297 (1081)
T ss_pred cccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecC
Confidence 899999999999987542211 112234455555555532222211 111223344555566678999999
Q ss_pred CCCceeEEEecCCC---------CeeEEeeecCCeEEEEeccc
Q 021121 235 HGYAVRKVKFSPHR---------RNLLASCSYDMTVCLWDFMV 268 (317)
Q Consensus 235 ~~~~v~~~~~~~~~---------~~~l~~~~~d~~i~vwd~~~ 268 (317)
|...|....|-..+ ..-|++-+.|..+++|-+.+
T Consensus 298 H~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 298 HDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 99988777664322 23589999999999998765
No 261
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=8.8e-12 Score=101.86 Aligned_cols=279 Identities=13% Similarity=0.185 Sum_probs=167.0
Q ss_pred eeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC-------
Q 021121 10 GYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD------- 82 (317)
Q Consensus 10 v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------- 82 (317)
-+-+.||| .|.++++... .-|.+|- +..+..+..+.|+ .|.-+.|||.. ++|++=+..
T Consensus 213 etyv~wSP--~GTYL~t~Hk-------~GI~lWG----G~~f~r~~RF~Hp-~Vq~idfSP~E-kYLVT~s~~p~~~~~~ 277 (698)
T KOG2314|consen 213 ETYVRWSP--KGTYLVTFHK-------QGIALWG----GESFDRIQRFYHP-GVQFIDFSPNE-KYLVTYSPEPIIVEED 277 (698)
T ss_pred eeeEEecC--CceEEEEEec-------cceeeec----CccHHHHHhccCC-CceeeecCCcc-ceEEEecCCccccCcc
Confidence 35689999 7999998874 3688994 3345567777776 58899999986 688886532
Q ss_pred ----CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEe
Q 021121 83 ----GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWN 158 (317)
Q Consensus 83 ----g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~ 158 (317)
..+.|||+.++........+......-.-+.||.|++ ++|--.. ..|.||+..+...+..-.-.-..|....|+
T Consensus 278 d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdK-y~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~Fsws 355 (698)
T KOG2314|consen 278 DNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDK-YFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWS 355 (698)
T ss_pred cCCCceEEEEEccccchhcceeccCCCccccceEEeccCCc-eeEEecc-ceEEEEecCceeeecccccCCccccCcccC
Confidence 5799999998833222222222222233468999988 7776665 578888865432221111112234444555
Q ss_pred cCCCCeEE-----------------------------------------------EE----------eCCCeEEEEeCCC
Q 021121 159 PRHSDVFC-----------------------------------------------SA----------SGDCTLRIWDVRE 181 (317)
Q Consensus 159 ~~~~~~l~-----------------------------------------------~~----------~~dg~i~i~d~~~ 181 (317)
|. +++|| .- +.-..+.|+.++.
T Consensus 356 P~-~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrire 434 (698)
T KOG2314|consen 356 PT-SNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIRE 434 (698)
T ss_pred CC-cceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeec
Confidence 54 33333 11 0011233333333
Q ss_pred CCceeeeccCccceEEEEecCCCCcEEEEEec---CCcEEEEEccC-CCcc--EEEEecCCCceeEEEecCCCCeeEEee
Q 021121 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASV---DKSIKIWDVRN-YRVP--IAVLNGHGYAVRKVKFSPHRRNLLASC 255 (317)
Q Consensus 182 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~---d~~i~v~d~~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~ 255 (317)
.......-.....|...+|-| .|+.+++-+. ..++.+|-+++ ...+ +..+. ....+.+.|+|.|+ +++.+
T Consensus 435 KdIpve~velke~vi~FaWEP-~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~-fvvva 510 (698)
T KOG2314|consen 435 KDIPVEVVELKESVIAFAWEP-HGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGR-FVVVA 510 (698)
T ss_pred cCCCceeeecchheeeeeecc-CCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCc-EEEEE
Confidence 322222223455688899999 6666655443 24688888873 2221 22232 24578899999999 55544
Q ss_pred e---cCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeec------CCcEEEEecCC
Q 021121 256 S---YDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGW------DELVYVWQQGM 312 (317)
Q Consensus 256 ~---~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~------dg~i~~w~~~~ 312 (317)
. ..|.+.++|+............| ...+.+.|.|. |+++++++. |.--++|++..
T Consensus 511 ~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPt-GRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 511 ALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPT-GRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred EecccccceEEEecchhhhhhccCccc-cccccceECCC-CCEEEEeeehhhhccccceEEEEeec
Confidence 3 57889999987533222222233 34678999999 889998875 44456776643
No 262
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=6.7e-10 Score=86.64 Aligned_cols=257 Identities=16% Similarity=0.184 Sum_probs=167.9
Q ss_pred ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCC-CCeeEEEecCCCCCeEEEE-EcC
Q 021121 5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTA-DGVYDLAWSESHDSLLIAA-VAD 82 (317)
Q Consensus 5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~-~~d 82 (317)
.....++-|+|+| +.+.+.+.... ...|.|--|.++.....+..+...... .+-..++.+++++ +++++ ...
T Consensus 37 ~~~~nptyl~~~~--~~~~LY~v~~~---~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~-~vf~AnY~~ 110 (346)
T COG2706 37 AELGNPTYLAVNP--DQRHLYVVNEP---GEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGR-FVFVANYHS 110 (346)
T ss_pred cccCCCceEEECC--CCCEEEEEEec---CCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCC-EEEEEEccC
Confidence 3456677899999 56555555431 016889999998764445544443322 2348899999985 55555 456
Q ss_pred CeEEEEEeCCCCCCCCceeeccCCcc----------eEEEEEecCCCCEEEEEc-CCCEEEEEEcCCCceeEEee---cc
Q 021121 83 GSVKIYDTALPPTANPIRSLHEHTRE----------VHSADYNPTRRDSFITSS-WDDTVKLWTVDRPTSVRTFK---EH 148 (317)
Q Consensus 83 g~i~v~~~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~---~~ 148 (317)
|.|.++.+..............|.+. +....+.|+++ +|++.+ ..-.|.+|++..++....-. ..
T Consensus 111 g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~-~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~ 189 (346)
T COG2706 111 GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR-YLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP 189 (346)
T ss_pred ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC-EEEEeecCCceEEEEEcccCccccccccccCC
Confidence 89999999765333333333345544 88899999998 666553 34589999999775433211 34
Q ss_pred ccceEEEEEecCCCCeEEEE-eCCCeEEEEeCCCC-Cceeeec---------cCccceEEEEecCCCCcEEEEEecC-Cc
Q 021121 149 AYCVYNATWNPRHSDVFCSA-SGDCTLRIWDVREM-GSTMIIP---------AHEFEILACDWNKYDDCLIASASVD-KS 216 (317)
Q Consensus 149 ~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~-~~~~~~~---------~~~~~v~~i~~~~~~~~~l~~~~~d-~~ 216 (317)
......|.|+|+ +++.... --+++|.+|..... .....++ ........|..+| ++++|.++... ..
T Consensus 190 G~GPRHi~FHpn-~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-dGrFLYasNRg~ds 267 (346)
T COG2706 190 GAGPRHIVFHPN-GKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-DGRFLYASNRGHDS 267 (346)
T ss_pred CCCcceEEEcCC-CcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-CCCEEEEecCCCCe
Confidence 556899999999 6766554 45899999998763 2222221 1234567889999 99998887532 36
Q ss_pred EEEEEccCCCccEEE---EecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121 217 IKIWDVRNYRVPIAV---LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED 270 (317)
Q Consensus 217 i~v~d~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~ 270 (317)
|.+|.+......+.. ...+....+...|+|.++.++++.-.+..|.+|......
T Consensus 268 I~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 268 IAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred EEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 888877654332332 233445578999999999555555455679999866543
No 263
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.52 E-value=1.2e-13 Score=126.07 Aligned_cols=224 Identities=14% Similarity=0.278 Sum_probs=163.7
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeec-cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEc
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLH-EHTREVHSADYNPTRRDSFITSSWDDTVKLWTV 136 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~ 136 (317)
.+-..|.++.=+|..+ +.++|+.||.|++|....+ ..+..+. .-...|+.+.|+.+|+ .+..+..||.+.+|.+
T Consensus 2206 ~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~---~~v~~~rt~g~s~vtr~~f~~qGn-k~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHG---QQVVCFRTAGNSRVTRSRFNHQGN-KFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred cccCceeeecCCCCCc-eEEecCCCceEEEEeccCC---CeEEEeeccCcchhhhhhhcccCC-ceeeeccCCceeeccc
Confidence 3455688888899874 8889999999999998766 3443333 2348899999999998 8888999999999998
Q ss_pred CCCceeEEeeccccceEEEEEecCCCCeEEEEe---CCCeEEEEeCCCCCc-eeeeccCccceEEEEecCCCCcEEEEEe
Q 021121 137 DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSAS---GDCTLRIWDVREMGS-TMIIPAHEFEILACDWNKYDDCLIASAS 212 (317)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l~~~~ 212 (317)
. .+.....+.|......+.|-. ..+++++ .++.+.+||..-... -..-..|...++++++-| ..++|++|+
T Consensus 2281 ~-pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P-~~qllisgg 2355 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAP-KHQLLISGG 2355 (2439)
T ss_pred C-CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcC-cceEEEecC
Confidence 7 667777888999899999984 5666654 578899999753321 112267999999999999 999999999
Q ss_pred cCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeec-c--cc--eeEeEE
Q 021121 213 VDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH-H--TE--FAVGVD 287 (317)
Q Consensus 213 ~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~--~~--~v~~~~ 287 (317)
.+|.|++||++..+. .+.++. +. .. .++++|+..|.|+||++.... ++..+.. | .+ ...++.
T Consensus 2356 r~G~v~l~D~rqrql-~h~~~~---------~~-~~-~~f~~~ss~g~ikIw~~s~~~-ll~~~p~e~ak~gfFr~~g~Q 2422 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQL-RHTFQA---------LD-TR-EYFVTGSSEGNIKIWRLSEFG-LLHTFPSEHAKQGFFRNIGMQ 2422 (2439)
T ss_pred CcCcEEEeehHHHHH-HHHhhh---------hh-hh-heeeccCcccceEEEEccccc-hhhcCchhhcccchhhhcCce
Confidence 999999999997543 444332 43 33 379999999999999998764 3333221 1 11 122233
Q ss_pred EEeccCCeEEEeecCCc
Q 021121 288 MSVLVEGLLASTGWDEL 304 (317)
Q Consensus 288 ~~~~~~~~l~s~~~dg~ 304 (317)
..-+-.+.|.+++.||+
T Consensus 2423 ~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2423 INVGQCNRIFSCGADGT 2439 (2439)
T ss_pred eeeccCceEEEecCCCC
Confidence 32222457888888874
No 264
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.52 E-value=1.8e-11 Score=91.38 Aligned_cols=266 Identities=13% Similarity=0.033 Sum_probs=169.7
Q ss_pred CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCC----CCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEE
Q 021121 36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSES----HDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHS 111 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~ 111 (317)
.-.+.+|++-+......++. ..+.|-|- ...+|+.|+..|...+|...+.+ ........|...|+-
T Consensus 51 t~sv~i~~~y~N~~~iv~~y--------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~--~h~~~cd~snn~v~~ 120 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFY--------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTND--GHLYQCDVSNNDVTL 120 (344)
T ss_pred eeeeEeccccCCchhhEEee--------ecccccchHhhccccEEEeccccceeeeecccCcc--cceeeecccccchhh
Confidence 44677888765542222221 33455541 12489999999999999987542 222222334443332
Q ss_pred EEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc-e-e-ee
Q 021121 112 ADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS-T-M-II 188 (317)
Q Consensus 112 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~-~-~~ 188 (317)
+.=.-+....+..++.|.++++.+++.+..........-.+.+++++++ +.++++.++...|..|.+..... + . ..
T Consensus 121 ~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd-~~~~~~Vgds~~Vf~y~id~~sey~~~~~~ 199 (344)
T KOG4532|consen 121 VKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSND-PSWGSSVGDSRRVFRYAIDDESEYIENIYE 199 (344)
T ss_pred hhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCC-CceEEEecCCCcceEEEeCCccceeeeeEe
Confidence 2222222335777888889999888765443333222234889999999 89999999999999999876432 2 2 22
Q ss_pred ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEE----EecCCCceeEEEecCCCCe-eEEeeecCCeEEE
Q 021121 189 PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAV----LNGHGYAVRKVKFSPHRRN-LLASCSYDMTVCL 263 (317)
Q Consensus 189 ~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~v 263 (317)
......-.+..|+. ....+|++..||++.|||+|....+... ...|++.++.+.|++.|.. +|...-.-+.+.+
T Consensus 200 a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv 278 (344)
T KOG4532|consen 200 APTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHV 278 (344)
T ss_pred cccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEE
Confidence 23334456788998 8889999999999999999987765443 3458899999999986642 4554555678999
Q ss_pred Eecccccceeee------eeccc-ceeEeEEEEeccCCeEEEeecCCcEEEEecCCCCC
Q 021121 264 WDFMVEDALVGR------YDHHT-EFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPR 315 (317)
Q Consensus 264 wd~~~~~~~~~~------~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~ 315 (317)
.|+++....... ...|. ..|.+-.|+.+ +..+.+.+.+. +.-|++....|
T Consensus 279 ~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~-n~s~~v~~e~~-~ae~ni~srsR 335 (344)
T KOG4532|consen 279 VDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNE-NESNDVKNELQ-GAEYNILSRSR 335 (344)
T ss_pred EEcccCceeeEEecCccccccccccccccccccCC-Ccccccccchh-hheeeccccce
Confidence 999987632211 11232 34888888877 44444444332 45566655433
No 265
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=2.7e-11 Score=103.07 Aligned_cols=216 Identities=11% Similarity=0.034 Sum_probs=129.1
Q ss_pred eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEE-cCC--CEEEEEEcCCCceeEEeeccccceEEEEEecC
Q 021121 84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITS-SWD--DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR 160 (317)
Q Consensus 84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (317)
.+.++|.+.. ....+..+...+.+..|+|+|+ .|+.. ..+ ..|.+||+.+++... +....+.....+|+|+
T Consensus 199 ~l~i~d~dG~----~~~~l~~~~~~~~~p~wSPDG~-~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPD 272 (448)
T PRK04792 199 QLMIADYDGY----NEQMLLRSPEPLMSPAWSPDGR-KLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPD 272 (448)
T ss_pred EEEEEeCCCC----CceEeecCCCcccCceECCCCC-EEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCC
Confidence 5666665432 2234445677888999999998 55544 333 368899998876532 2222334457899999
Q ss_pred CCCeEEEEeCCCe--EEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEec-CC--cEEEEEccCCCccEEEEecC
Q 021121 161 HSDVFCSASGDCT--LRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASV-DK--SIKIWDVRNYRVPIAVLNGH 235 (317)
Q Consensus 161 ~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~ 235 (317)
+..++++.+.+|. |+++|+.+++. ..+..+........|+| +++.++..+. ++ .|+++|+.+++. ..+...
T Consensus 273 G~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~--~~Lt~~ 348 (448)
T PRK04792 273 GKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKV--SRLTFE 348 (448)
T ss_pred CCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCE--EEEecC
Confidence 4445555666665 88888877654 34444445567789999 7877765543 33 466667766542 333222
Q ss_pred CCceeEEEecCCCCeeEEeeecCCe--EEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCc--EEEEecC
Q 021121 236 GYAVRKVKFSPHRRNLLASCSYDMT--VCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDEL--VYVWQQG 311 (317)
Q Consensus 236 ~~~v~~~~~~~~~~~~l~~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--i~~w~~~ 311 (317)
.......+|+|+|+.++++...++. |.++|+.+++. ..+... .......|+|++..++++...+|. +++++.+
T Consensus 349 g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~--~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 349 GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM--QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe--EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 2233467899999965555544554 55567766642 222221 122345899994444555555554 5666654
Q ss_pred C
Q 021121 312 M 312 (317)
Q Consensus 312 ~ 312 (317)
.
T Consensus 426 G 426 (448)
T PRK04792 426 G 426 (448)
T ss_pred C
Confidence 4
No 266
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.52 E-value=2.4e-10 Score=92.20 Aligned_cols=260 Identities=12% Similarity=0.060 Sum_probs=153.4
Q ss_pred ceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEE---------cCCeEEEEEeCCCCCCCCceeeccC--
Q 021121 37 GRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAV---------ADGSVKIYDTALPPTANPIRSLHEH-- 105 (317)
Q Consensus 37 g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---------~dg~i~v~~~~~~~~~~~~~~~~~~-- 105 (317)
++|.+.|....+ .+........-..+ ++|++..+.++.+ .+..|.+||..+. +....+..-
T Consensus 27 ~~v~ViD~~~~~----v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~---~~~~~i~~p~~ 98 (352)
T TIGR02658 27 TQVYTIDGEAGR----VLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH---LPIADIELPEG 98 (352)
T ss_pred ceEEEEECCCCE----EEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC---cEEeEEccCCC
Confidence 799999998754 22323332233344 9999865555556 5889999999876 444444321
Q ss_pred -----CcceEEEEEecCCCCEEEEEc-C-CCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEe
Q 021121 106 -----TREVHSADYNPTRRDSFITSS-W-DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD 178 (317)
Q Consensus 106 -----~~~v~~~~~~~~~~~~l~~~~-~-dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d 178 (317)
...-..++++|+|+ +++... . +..|.+.|+.+++.+.++.-.. ...-...++. ..+ +-+.||......
T Consensus 99 p~~~~~~~~~~~~ls~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~-~~~--~~~~Dg~~~~v~ 173 (352)
T TIGR02658 99 PRFLVGTYPWMTSLTPDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAND-TFF--MHCRDGSLAKVG 173 (352)
T ss_pred chhhccCccceEEECCCCC-EEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCC-ccE--EEeecCceEEEE
Confidence 22334789999998 566544 3 7999999999999988876422 2222222221 222 223344444433
Q ss_pred CCCCCcee-----eeccCccce-EEEEecCCCCcEEEEEecCCcEEEEEccCCC----ccEEEEec-------CCCceeE
Q 021121 179 VREMGSTM-----IIPAHEFEI-LACDWNKYDDCLIASASVDKSIKIWDVRNYR----VPIAVLNG-------HGYAVRK 241 (317)
Q Consensus 179 ~~~~~~~~-----~~~~~~~~v-~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~----~~~~~~~~-------~~~~v~~ 241 (317)
+.+..... .+.....++ ..-.+.+.++.++.+..+ |.|.+.|+.... .+...+.. ..+...-
T Consensus 174 ~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ 252 (352)
T TIGR02658 174 YGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ 252 (352)
T ss_pred ecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCccee
Confidence 32211111 111100010 000334436777766665 999999965432 11222111 2334455
Q ss_pred EEecCCCCeeEEee---------ecCCeEEEEecccccceeeeeecccceeEeEEEEeccCC-eEEEee-cCCcEEEEec
Q 021121 242 VKFSPHRRNLLASC---------SYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEG-LLASTG-WDELVYVWQQ 310 (317)
Q Consensus 242 ~~~~~~~~~~l~~~---------~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~-~dg~i~~w~~ 310 (317)
++++|+++++++.. ...+.|.++|..+.+.. ..+.- ...+..++++|+ ++ +|++.. .++.|.+.|.
T Consensus 253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi-~~i~v-G~~~~~iavS~D-gkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL-RKIEL-GHEIDSINVSQD-AKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE-EEEeC-CCceeeEEECCC-CCeEEEEeCCCCCcEEEEEC
Confidence 99999999655433 12257999999988743 44332 346889999999 55 666554 6889999998
Q ss_pred CCC
Q 021121 311 GMD 313 (317)
Q Consensus 311 ~~~ 313 (317)
.+.
T Consensus 330 ~t~ 332 (352)
T TIGR02658 330 ETG 332 (352)
T ss_pred cCC
Confidence 765
No 267
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.51 E-value=4.8e-13 Score=99.08 Aligned_cols=240 Identities=13% Similarity=0.165 Sum_probs=147.6
Q ss_pred eeEEEecCCCCCeEEEEEcCCeEEEEEeCCC---------CCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEE
Q 021121 63 VYDLAWSESHDSLLIAAVADGSVKIYDTALP---------PTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKL 133 (317)
Q Consensus 63 v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i 133 (317)
++.+.+.-+ ..|+++..++.+..+..... ....+...+..|.++-.+-+.+-.+. -++++..||.+.+
T Consensus 39 ~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t-~V~~~~~dg~~~v 115 (319)
T KOG4714|consen 39 LSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDN-RVCIGYADGSLAV 115 (319)
T ss_pred EEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCC-ceEecCCCceEEE
Confidence 667777754 47777777766555543221 11123333333444333333333333 6999999999999
Q ss_pred EEcCCCcee-EEeeccccceEEEEEecCCCCeEEEEe-----CCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcE
Q 021121 134 WTVDRPTSV-RTFKEHAYCVYNATWNPRHSDVFCSAS-----GDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCL 207 (317)
Q Consensus 134 wd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 207 (317)
++.+.-..+ .+.......-.+.+.... ++.+.++. .-+..+.|+++..+....-......+.+++-+|...++
T Consensus 116 ~s~~~~~~~~~~i~~~~~~~as~~~~~~-~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~ 194 (319)
T KOG4714|consen 116 FSTDKDLALMSRIPSIHSGSASRKICRH-GNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHL 194 (319)
T ss_pred EechHHHhhhhhcccccccccccceeec-ccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccE
Confidence 987652111 111111111112222222 33333321 23346677776554433322233449999999977888
Q ss_pred EEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc-----------------
Q 021121 208 IASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED----------------- 270 (317)
Q Consensus 208 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~----------------- 270 (317)
+++|+.||.+.+||.++...+...+..|+.+++.+-|+|..+.-|+++++||.+--||..+.-
T Consensus 195 v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD 274 (319)
T KOG4714|consen 195 VCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGD 274 (319)
T ss_pred EEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCccccccccccCC
Confidence 999999999999999998888888999999999999999887779999999999999977421
Q ss_pred cee------eeeecccceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121 271 ALV------GRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309 (317)
Q Consensus 271 ~~~------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~ 309 (317)
+.. ..+......|+++... +..|++|+.-+.|++++
T Consensus 275 ~v~s~i~i~~ll~~~~~SinsfDV~---g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 275 PVKSRIEITSLLPSRSLSINSFDVL---GPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cccceEeeeccccccceeeeeeecc---CceEEeccccceEEEec
Confidence 000 0011112234444443 56899999889998875
No 268
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.51 E-value=1.5e-12 Score=113.43 Aligned_cols=183 Identities=15% Similarity=0.227 Sum_probs=143.7
Q ss_pred CeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcce--E---EEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecc
Q 021121 74 SLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREV--H---SADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEH 148 (317)
Q Consensus 74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v--~---~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 148 (317)
..++.++.+..+.+||.... ....... +.... . -+.++++.- ++++|+--+.|.+|+....+.-..+.+|
T Consensus 100 k~i~l~~~~ns~~i~d~~~~---~~~~~i~-~~er~~l~~~~~~g~s~~~~-~i~~gsv~~~iivW~~~~dn~p~~l~GH 174 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNS---SVLSKIQ-SDERCTLYSSLIIGDSAEEL-YIASGSVFGEIIVWKPHEDNKPIRLKGH 174 (967)
T ss_pred ceEEEEEcCceEEEEecccC---ceehhcC-CCceEEEEeEEEEeccCcEE-EEEeccccccEEEEeccccCCcceeccc
Confidence 57788888889999998754 3333222 22221 1 122344433 8899999999999999855444468899
Q ss_pred ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCcee-eeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCc
Q 021121 149 AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM-IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV 227 (317)
Q Consensus 149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 227 (317)
.+.+.++.|+-+ +.++++.++|.++++|++.+.+... ..-+|...+..+.+.| . .++++++|-+.++|+.....
T Consensus 175 eG~iF~i~~s~d-g~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--~i~t~gedctcrvW~~~~~~- 249 (967)
T KOG0974|consen 175 EGSIFSIVTSLD-GRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--RIITVGEDCTCRVWGVNGTQ- 249 (967)
T ss_pred CCceEEEEEccC-CcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--eeEEeccceEEEEEecccce-
Confidence 999999999998 9999999999999999999987766 5567999999999998 5 89999999999999766533
Q ss_pred cEEEEecCC-CceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121 228 PIAVLNGHG-YAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV 268 (317)
Q Consensus 228 ~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~ 268 (317)
+..+.+|. ..++.++..+... +++|++.|+.+++|++..
T Consensus 250 -l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 250 -LEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred -ehhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhc
Confidence 44666664 5789999988876 799999999999999765
No 269
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.51 E-value=1.8e-13 Score=124.99 Aligned_cols=190 Identities=17% Similarity=0.303 Sum_probs=152.6
Q ss_pred CCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee-ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCC
Q 021121 105 HTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK-EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMG 183 (317)
Q Consensus 105 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 183 (317)
+-..|.++.=+|... +.++|+.||.|++|....++.+..++ .....++.+.|+.+ |+.+..+..||.+.+|... .+
T Consensus 2207 ~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~q-Gnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQ-GNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred ccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhccc-CCceeeeccCCceeecccC-Cc
Confidence 445677777788877 89999999999999998888877765 23478999999998 7888889999999999987 66
Q ss_pred ceeeeccCccceEEEEecCCCCcEEEEEe---cCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCe
Q 021121 184 STMIIPAHEFEILACDWNKYDDCLIASAS---VDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMT 260 (317)
Q Consensus 184 ~~~~~~~~~~~v~~i~~~~~~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 260 (317)
+....+.|......+.|-. ..+++++ .++.+.+||.......-.....|.+.++++++.|..+ +|++|+.+|.
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q-llisggr~G~ 2359 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ-LLISGGRKGE 2359 (2439)
T ss_pred ceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce-EEEecCCcCc
Confidence 7777888888888888864 4566654 5678999997654332333478999999999999988 8999999999
Q ss_pred EEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121 261 VCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 261 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
|++||++..+ +.+.++. +. . ..++++|+..|.++||++...
T Consensus 2360 v~l~D~rqrq-l~h~~~~---------~~-~-~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2360 VCLFDIRQRQ-LRHTFQA---------LD-T-REYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred EEEeehHHHH-HHHHhhh---------hh-h-hheeeccCcccceEEEEcccc
Confidence 9999998765 4333332 33 2 679999999999999999864
No 270
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.51 E-value=1.1e-10 Score=108.39 Aligned_cols=242 Identities=15% Similarity=0.220 Sum_probs=156.4
Q ss_pred eEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeec------------CCCCeeEEEecCCCCCeEEE
Q 021121 11 YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFD------------TADGVYDLAWSESHDSLLIA 78 (317)
Q Consensus 11 ~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~l~~ 78 (317)
..+++++. ++.+.++-.. +++|+++|..... .......+ .-.....+++.++++.+.++
T Consensus 571 ~gvavd~~-~g~lyVaDs~------n~rI~v~d~~G~~--i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVa 641 (1057)
T PLN02919 571 GKLAIDLL-NNRLFISDSN------HNRIVVTDLDGNF--IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVA 641 (1057)
T ss_pred ceEEEECC-CCeEEEEECC------CCeEEEEeCCCCE--EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEE
Confidence 35778774 4555555543 7899999976431 11111100 11235788999887434444
Q ss_pred EEcCCeEEEEEeCCCCCCCCceeecc----------C-------CcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce
Q 021121 79 AVADGSVKIYDTALPPTANPIRSLHE----------H-------TREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS 141 (317)
Q Consensus 79 ~~~dg~i~v~~~~~~~~~~~~~~~~~----------~-------~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 141 (317)
-..++.|+++|+.++ .+..+.+ . -..-..++++|++..++++.+.++.|++||..++..
T Consensus 642 Dt~n~~Ir~id~~~~----~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v 717 (1057)
T PLN02919 642 DTENHALREIDFVNE----TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT 717 (1057)
T ss_pred eCCCceEEEEecCCC----EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE
Confidence 445678999987653 1211110 0 112357899996554778888889999999877643
Q ss_pred eEEeec---------------cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec-------------cC--
Q 021121 142 VRTFKE---------------HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP-------------AH-- 191 (317)
Q Consensus 142 ~~~~~~---------------~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------~~-- 191 (317)
. .+.+ .-.....++++|++..++++-+.++.|++||+.++....... ..
T Consensus 718 ~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG 796 (1057)
T PLN02919 718 R-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG 796 (1057)
T ss_pred E-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence 2 2111 112457799999944477777788999999998764321110 00
Q ss_pred ------ccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecC--------------CCceeEEEecCCCCee
Q 021121 192 ------EFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH--------------GYAVRKVKFSPHRRNL 251 (317)
Q Consensus 192 ------~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~~ 251 (317)
-.....+++++ +++++++-..++.|++||..+.. +..+.+. -.....++++++|+ +
T Consensus 797 ~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~--v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-l 872 (1057)
T PLN02919 797 VGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKR--VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-L 872 (1057)
T ss_pred chhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCe--EEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-E
Confidence 01235788998 88899998999999999987654 2222221 12467899999997 7
Q ss_pred EEeeecCCeEEEEeccccc
Q 021121 252 LASCSYDMTVCLWDFMVED 270 (317)
Q Consensus 252 l~~~~~d~~i~vwd~~~~~ 270 (317)
+++-+.++.|++||+.+++
T Consensus 873 yVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 873 FVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEECCCCEEEEEECCCCc
Confidence 8888889999999998865
No 271
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.49 E-value=2.8e-12 Score=97.67 Aligned_cols=247 Identities=17% Similarity=0.309 Sum_probs=171.6
Q ss_pred CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCC--CCCCceeeccCC------------cceEEEEEecC-CCCEEE
Q 021121 59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPP--TANPIRSLHEHT------------REVHSADYNPT-RRDSFI 123 (317)
Q Consensus 59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~--~~~~~~~~~~~~------------~~v~~~~~~~~-~~~~l~ 123 (317)
....|+++.|...| .++++|...|+|.+|.-+... ..+....+++|. ..|..+.|..+ +...++
T Consensus 25 ead~ItaVefd~tg-~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDETG-LYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEecccc-ceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 45679999999988 699999999999999865431 122333455554 45788888644 455788
Q ss_pred EEcCCCEEEEEEcCCCc------------------------------------------eeEEe-eccccceEEEEEecC
Q 021121 124 TSSWDDTVKLWTVDRPT------------------------------------------SVRTF-KEHAYCVYNATWNPR 160 (317)
Q Consensus 124 ~~~~dg~v~iwd~~~~~------------------------------------------~~~~~-~~~~~~v~~~~~~~~ 160 (317)
..+.|.+|++|.+.... +.+.+ ..|..-++++.|+.+
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 88889999999875320 00011 346667889999987
Q ss_pred CCCeEEEEeCCCeEEEEeCCCCCce---eeeccCc-----cceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEE--
Q 021121 161 HSDVFCSASGDCTLRIWDVREMGST---MIIPAHE-----FEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIA-- 230 (317)
Q Consensus 161 ~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~-----~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-- 230 (317)
...+++ ..|-.|.+|++.-.... ..+++|. .-|++..|+|...+.+...+..|.|++-|+|....+..
T Consensus 184 -~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 184 -KETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred -hheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence 565544 46778999998754332 2233333 34889999997788888889999999999995432111
Q ss_pred -------------EEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeeccc------------cee--
Q 021121 231 -------------VLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHT------------EFA-- 283 (317)
Q Consensus 231 -------------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~------------~~v-- 283 (317)
.+.+-...|..+.|+|+|+ ++++-+ --++++||++..+.++.+..-|. ..|
T Consensus 262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngr-yIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifd 339 (460)
T COG5170 262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGR-YILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFD 339 (460)
T ss_pred hhhhhccCcccchhHHHHhhhhcceEEcCCCc-EEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceee
Confidence 1112235788999999998 576554 46899999998877776665442 223
Q ss_pred -EeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121 284 -VGVDMSVLVEGLLASTGWDELVYVWQQG 311 (317)
Q Consensus 284 -~~~~~~~~~~~~l~s~~~dg~i~~w~~~ 311 (317)
..+.|+.+ ...+++|+..+..-+|-..
T Consensus 340 kFeisfSgd-~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 340 KFEISFSGD-DKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eEEEEecCC-cccccccccccceeeeccc
Confidence 35778887 7789999988887777643
No 272
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=2.9e-11 Score=101.92 Aligned_cols=285 Identities=15% Similarity=0.165 Sum_probs=191.5
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcce------------eeeeecCCCCeeEEEecCCCC
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALT------------ELVAFDTADGVYDLAWSESHD 73 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~ 73 (317)
.+....|++|+.. .+.+++++. ||.+++..+........ .....+|++.|.-+.|+.+.
T Consensus 13 nnvkL~c~~WNke-~gyIAcgG~-------dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~- 83 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKE-SGYIACGGA-------DGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN- 83 (1189)
T ss_pred CCceEEEEEEccc-CCeEEeccc-------cceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-
Confidence 4556789999993 455555554 99999999875432111 11223789999999999876
Q ss_pred CeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeE-Eeeccccce
Q 021121 74 SLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVR-TFKEHAYCV 152 (317)
Q Consensus 74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~v 152 (317)
..|-+...+|.|.+|-+-.+ .+-....-...++.|.+++|+.+|. .+.....||.|.+=.++..+... .++ ....
T Consensus 84 QKLTtSDt~GlIiVWmlykg-sW~EEMiNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l 159 (1189)
T KOG2041|consen 84 QKLTTSDTSGLIIVWMLYKG-SWCEEMINNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGNRIWGKELK--GQLL 159 (1189)
T ss_pred ccccccCCCceEEEEeeecc-cHHHHHhhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccceecchhcc--hhec
Confidence 58889999999999998765 2222222234567899999999998 89999999999887776443221 122 2224
Q ss_pred EEEEEecCCCCeEEEEeCCCeEEEEeCCCCC-----cee--e----eccCccceEEEEec-------CCCCcEEEEEecC
Q 021121 153 YNATWNPRHSDVFCSASGDCTLRIWDVREMG-----STM--I----IPAHEFEILACDWN-------KYDDCLIASASVD 214 (317)
Q Consensus 153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~--~----~~~~~~~v~~i~~~-------~~~~~~l~~~~~d 214 (317)
..+.|+++ ...++.+-..|.+.+||.+..- ... . +......+..+.|. |.+...++++-.+
T Consensus 160 ~hv~ws~D-~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~n 238 (1189)
T KOG2041|consen 160 AHVLWSED-LEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYAN 238 (1189)
T ss_pred cceeeccc-HHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcC
Confidence 57889999 6777778888999999976421 101 1 11112235555553 2267789999999
Q ss_pred CcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCC---------eEEEEecccccceeeeeecccceeEe
Q 021121 215 KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDM---------TVCLWDFMVEDALVGRYDHHTEFAVG 285 (317)
Q Consensus 215 ~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~---------~i~vwd~~~~~~~~~~~~~~~~~v~~ 285 (317)
|.+.+-.-.+...|+..-.+ -.+..+.|+++|. +|+.++.+. .|.+|..- + ..+..++-....|++
T Consensus 239 Gr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~-vLAvcG~~~da~~~~d~n~v~Fysp~-G-~i~gtlkvpg~~It~ 313 (1189)
T KOG2041|consen 239 GRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGA-VLAVCGNDSDADEPTDSNKVHFYSPY-G-HIVGTLKVPGSCITG 313 (1189)
T ss_pred ceehhhhhcCCCCCeEEecc--cEeecceecCCCc-EEEEccCcccccCccccceEEEeccc-h-hheEEEecCCceeee
Confidence 99998876665555554443 5788999999998 788877542 45555432 2 356677777888999
Q ss_pred EEEEeccCCeEEEeecCCcEEEEecC
Q 021121 286 VDMSVLVEGLLASTGWDELVYVWQQG 311 (317)
Q Consensus 286 ~~~~~~~~~~l~s~~~dg~i~~w~~~ 311 (317)
++|-.. +-.++.+ .|+.|++=+++
T Consensus 314 lsWEg~-gLriA~A-vdsfiyfanIR 337 (1189)
T KOG2041|consen 314 LSWEGT-GLRIAIA-VDSFIYFANIR 337 (1189)
T ss_pred eEEcCC-ceEEEEE-ecceEEEEeec
Confidence 999864 3333333 46666655544
No 273
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.48 E-value=1.2e-10 Score=107.97 Aligned_cols=240 Identities=12% Similarity=0.136 Sum_probs=158.8
Q ss_pred eEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeecc--------------CCcceEEEEEecCCCCEEEEEcCCC
Q 021121 64 YDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHE--------------HTREVHSADYNPTRRDSFITSSWDD 129 (317)
Q Consensus 64 ~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~~l~~~~~dg 129 (317)
..+++++.+..++++-..++.|+++|.... .+..+.. +-.....+++.+++..++++-...+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~----~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~ 646 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN----FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENH 646 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC----EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCc
Confidence 357888765457777778889999997532 2211111 1123578899988763344445567
Q ss_pred EEEEEEcCCCceeEEeecc-----------------ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc--
Q 021121 130 TVKLWTVDRPTSVRTFKEH-----------------AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA-- 190 (317)
Q Consensus 130 ~v~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-- 190 (317)
.|+++|+.++. +..+.+. -.....++++|+++.++++.+.++.|++||..++... .+.+
T Consensus 647 ~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G 724 (1057)
T PLN02919 647 ALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDG 724 (1057)
T ss_pred eEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCC
Confidence 89999987654 3333110 1235689999965788888888999999998765432 1111
Q ss_pred -------------CccceEEEEecCCCCc-EEEEEecCCcEEEEEccCCCccEEE------------EecC--------C
Q 021121 191 -------------HEFEILACDWNKYDDC-LIASASVDKSIKIWDVRNYRVPIAV------------LNGH--------G 236 (317)
Q Consensus 191 -------------~~~~v~~i~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~------------~~~~--------~ 236 (317)
.-.....++++| +++ ++++-..++.|++||+.++...... +... -
T Consensus 725 ~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l 803 (1057)
T PLN02919 725 YERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL 803 (1057)
T ss_pred ccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence 012346799999 665 6667677899999998865421110 0000 1
Q ss_pred CceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeec--------------ccceeEeEEEEeccCCeEEEeecC
Q 021121 237 YAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH--------------HTEFAVGVDMSVLVEGLLASTGWD 302 (317)
Q Consensus 237 ~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~~l~s~~~d 302 (317)
.....++++++|. ++++-..++.|++||..++. +. .+.+ .-....+++++++ ++++++-+.+
T Consensus 804 ~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~-v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~d-G~lyVaDt~N 879 (1057)
T PLN02919 804 QHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKR-VT-TLAGTGKAGFKDGKALKAQLSEPAGLALGEN-GRLFVADTNN 879 (1057)
T ss_pred cCCceeeEeCCCc-EEEEECCCCEEEEEECCCCe-EE-EEeccCCcCCCCCcccccccCCceEEEEeCC-CCEEEEECCC
Confidence 1235899999998 78888889999999987764 21 2221 1124678999998 6788888899
Q ss_pred CcEEEEecCCCC
Q 021121 303 ELVYVWQQGMDP 314 (317)
Q Consensus 303 g~i~~w~~~~~~ 314 (317)
+.|++||+.+..
T Consensus 880 n~Irvid~~~~~ 891 (1057)
T PLN02919 880 SLIRYLDLNKGE 891 (1057)
T ss_pred CEEEEEECCCCc
Confidence 999999998753
No 274
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.48 E-value=3.5e-10 Score=103.23 Aligned_cols=291 Identities=14% Similarity=0.123 Sum_probs=182.7
Q ss_pred cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeec------CCCCeeEEEecCCCCCeEEEEEc
Q 021121 8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFD------TADGVYDLAWSESHDSLLIAAVA 81 (317)
Q Consensus 8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~ 81 (317)
..+...+|.+..+..+++.+... .+..|.+-...... ....+..++ ....|.++.|.++. ..++.+..
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~----~~~~i~~~~~~~~~-~~~~l~s~~~~~~~~~~~~ivs~~yl~d~-~~l~~~~~ 95 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNE----IDYVIELDRFSQDG-SVEVLASWDAPLPDDPNDKIVSFQYLADS-ESLCIALA 95 (928)
T ss_pred cccceEEEecCCCeEEEEECCCC----cceEEEEEeeccCC-ceeEEEeccccCCcCCCCcEEEEEeccCC-CcEEEEEC
Confidence 45777888887555555554331 01344554444333 123333332 34689999999997 57888889
Q ss_pred CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC---------------C--------
Q 021121 82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD---------------R-------- 138 (317)
Q Consensus 82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~---------------~-------- 138 (317)
+|.|.+...+.......+.....-...|.+++||||+. +++..+.++++.+.+-. .
T Consensus 96 ~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~E-lla~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGW 174 (928)
T PF04762_consen 96 SGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEE-LLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGW 174 (928)
T ss_pred CceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcC-EEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeecc
Confidence 99999993332222233334444577999999999998 88888888888887431 0
Q ss_pred CceeEEeec------------------------cccceEEEEEecCCCCeEEEEeC---C---CeEEEEeCCCCCceeee
Q 021121 139 PTSVRTFKE------------------------HAYCVYNATWNPRHSDVFCSASG---D---CTLRIWDVREMGSTMII 188 (317)
Q Consensus 139 ~~~~~~~~~------------------------~~~~v~~~~~~~~~~~~l~~~~~---d---g~i~i~d~~~~~~~~~~ 188 (317)
|+....|++ ....-..++|-.| +.++++.+. . ..+++|+-+ |.....-
T Consensus 175 GkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGD-G~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS 252 (928)
T PF04762_consen 175 GKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGD-GEYFAVSSVEPETGSRRVIRVYSRE-GELQSTS 252 (928)
T ss_pred CcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCC-CcEEEEEEEEcCCCceeEEEEECCC-ceEEecc
Confidence 011011110 1224567889998 889888764 3 479999954 5443333
Q ss_pred ccCccceEEEEecCCCCcEEEEEec---CCcEEEEEccCCCccEEEEe--cCCCceeEEEecCCCCeeEEeeecCCeEEE
Q 021121 189 PAHEFEILACDWNKYDDCLIASASV---DKSIKIWDVRNYRVPIAVLN--GHGYAVRKVKFSPHRRNLLASCSYDMTVCL 263 (317)
Q Consensus 189 ~~~~~~v~~i~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~~i~v 263 (317)
..-.+--.+++|.| .|++||+.-. ...|.+|.-+..+.--..+. .....|..+.|++++. +||..-.|. |.+
T Consensus 253 E~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqL 329 (928)
T PF04762_consen 253 EPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQL 329 (928)
T ss_pred ccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceE
Confidence 33333345789999 9999998764 34577777554332222222 3456899999999998 788776555 999
Q ss_pred Eecccccc-eeeeee-cccceeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121 264 WDFMVEDA-LVGRYD-HHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ 310 (317)
Q Consensus 264 wd~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~ 310 (317)
|-..+-.- +.+.+. .....+..+.|+|.....|.....+|.+..+++
T Consensus 330 Wt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 330 WTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred EEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 98877551 122222 122335559999986667777777677766554
No 275
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.46 E-value=3.2e-10 Score=91.98 Aligned_cols=282 Identities=15% Similarity=0.156 Sum_probs=181.4
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC--
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG-- 83 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-- 83 (317)
...++..++||| .+.++++... -.|.+|.-.... .+..+.|+ .|..+.|+|.+ ++|.+=+..+
T Consensus 31 ~~~p~~~~~~SP--~G~~l~~~~~-------~~V~~~~g~~~~----~l~~~~~~-~V~~~~fSP~~-kYL~tw~~~pi~ 95 (561)
T COG5354 31 ENWPVAYVSESP--LGTYLFSEHA-------AGVECWGGPSKA----KLVRFRHP-DVKYLDFSPNE-KYLVTWSREPII 95 (561)
T ss_pred cCcchhheeecC--cchheehhhc-------cceEEccccchh----heeeeecC-CceecccCccc-ceeeeeccCCcc
Confidence 456788899999 7887777653 378899876544 33444444 58899999987 6888755433
Q ss_pred -------------eEEEEEeCCCC---------C---CCCcee---------------eccC---------------Ccc
Q 021121 84 -------------SVKIYDTALPP---------T---ANPIRS---------------LHEH---------------TRE 108 (317)
Q Consensus 84 -------------~i~v~~~~~~~---------~---~~~~~~---------------~~~~---------------~~~ 108 (317)
.+.+||...+. + ..++.. +.-| ...
T Consensus 96 ~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~g 175 (561)
T COG5354 96 EPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVG 175 (561)
T ss_pred ChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccc
Confidence 48899987751 0 000000 0001 134
Q ss_pred eEEEEEecCCCC-EEEE-----EcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEE-----------eCC
Q 021121 109 VHSADYNPTRRD-SFIT-----SSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSA-----------SGD 171 (317)
Q Consensus 109 v~~~~~~~~~~~-~l~~-----~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-----------~~d 171 (317)
|....|+|.+++ .|+. .+.++.+++|.+..+..+..-.-.+..-..+.|++. ++.++.- -..
T Consensus 176 i~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~-g~~ll~l~~t~~ksnKsyfge 254 (561)
T COG5354 176 ILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVL-GKYLLVLVMTHTKSNKSYFGE 254 (561)
T ss_pred eeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecC-CceEEEEEEEeeecccceecc
Confidence 667778877432 2332 356788899988866665544433444466788888 4544321 123
Q ss_pred CeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEE--ecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCC
Q 021121 172 CTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASA--SVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRR 249 (317)
Q Consensus 172 g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 249 (317)
..+++++++........ ...++|...+|.| .++.+++. -.+..+.++|++.. ....+ ....=+.+.|+|.++
T Consensus 255 snLyl~~~~e~~i~V~~-~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~--Pe~~rNT~~fsp~~r 328 (561)
T COG5354 255 SNLYLLRITERSIPVEK-DLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFDLRGN--LRFYF--PEQKRNTIFFSPHER 328 (561)
T ss_pred ceEEEEeecccccceec-cccccceeeeecc-cCCceeEEecccccceeecccccc--eEEec--CCcccccccccCccc
Confidence 56888988744333332 5678999999999 55555443 47788999999874 12222 233456788999999
Q ss_pred eeEEeeec---CCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEee------cCCcEEEEecCCC
Q 021121 250 NLLASCSY---DMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTG------WDELVYVWQQGMD 313 (317)
Q Consensus 250 ~~l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------~dg~i~~w~~~~~ 313 (317)
+ ++.++. .|.+.+||......++..+.+.. ..-+.|+|+ ++++.+.. .|..+.+||+...
T Consensus 329 ~-il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd-~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 329 Y-ILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPD-GQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred E-EEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCC-ceEEEecCCCcccccCcceEEEEecCc
Confidence 5 555443 47799999887765555555543 345689999 67665543 4889999998753
No 276
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=3e-11 Score=102.65 Aligned_cols=286 Identities=15% Similarity=0.123 Sum_probs=190.4
Q ss_pred ceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCC-----------CCCeEE
Q 021121 9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSES-----------HDSLLI 77 (317)
Q Consensus 9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~~l~ 77 (317)
.-.++.|+| .|.++.++.. .|.+.|...-+ .++.+. .|...|+.+.|.|. ...+||
T Consensus 17 N~~A~Dw~~--~GLiAygshs--------lV~VVDs~s~q-~iqsie--~h~s~V~~VrWap~~~p~~llS~~~~~lliA 83 (1062)
T KOG1912|consen 17 NRNAADWSP--SGLIAYGSHS--------LVSVVDSRSLQ-LIQSIE--LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIA 83 (1062)
T ss_pred cccccccCc--cceEEEecCc--------eEEEEehhhhh-hhhccc--cCccceeEEEeccCCCchhccCccccceeEE
Confidence 345789999 7888888754 78888865543 122222 47788999999873 123677
Q ss_pred EEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecC---CCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEE
Q 021121 78 AAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPT---RRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYN 154 (317)
Q Consensus 78 ~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 154 (317)
++...|.|.+||.... ..+..++.|..++..++|-+. .++.|++-....++.+|+..+|+...+.........|
T Consensus 84 saD~~GrIil~d~~~~---s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~ 160 (1062)
T KOG1912|consen 84 SADISGRIILVDFVLA---SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSC 160 (1062)
T ss_pred eccccCcEEEEEehhh---hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceee
Confidence 7888899999999876 666778888999999999653 3357777777889999999999999888877777888
Q ss_pred EEEecCCCCeEEEEeCCCeEEEEeCCCCCc------eeee-ccCcc-------------------------ceEEEEecC
Q 021121 155 ATWNPRHSDVFCSASGDCTLRIWDVREMGS------TMII-PAHEF-------------------------EILACDWNK 202 (317)
Q Consensus 155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~-~~~~~-------------------------~v~~i~~~~ 202 (317)
+.+.|-+...+..-+..|.+.+.+.-..+. ...+ ..|.. ....++|+|
T Consensus 161 f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p 240 (1062)
T KOG1912|consen 161 FRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSP 240 (1062)
T ss_pred eeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcCh
Confidence 999998888888888889888877532111 1111 11111 012356788
Q ss_pred CCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCe-eEEeeecCCeEEEEecccccceee-------
Q 021121 203 YDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRN-LLASCSYDMTVCLWDFMVEDALVG------- 274 (317)
Q Consensus 203 ~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~------- 274 (317)
.-.+. +.......+.++|++-.. ++....-..+.+.-+.+-|+.++ .|++.-.||.+.+|-.+.......
T Consensus 241 ~~rn~-lfi~~prellv~dle~~~-~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~ 318 (1062)
T KOG1912|consen 241 HWRNI-LFITFPRELLVFDLEYEC-CLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLS 318 (1062)
T ss_pred hhhce-EEEEeccceEEEcchhhc-eeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhc
Confidence 43444 444567789999998744 46665555555666777776533 788999999999997554211110
Q ss_pred --------eeec-ccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121 275 --------RYDH-HTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 275 --------~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
.+.. .+..+......|..+..++.--.+|.+.+|.+..
T Consensus 319 ~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~ 365 (1062)
T KOG1912|consen 319 MDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSN 365 (1062)
T ss_pred cccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhc
Confidence 0000 1112233344454344444444577788888874
No 277
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=8e-10 Score=92.85 Aligned_cols=214 Identities=7% Similarity=0.027 Sum_probs=126.5
Q ss_pred eEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC---CeEEEEEeCCCCCCCCceeeccCCcceEEEEE
Q 021121 38 RVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD---GSVKIYDTALPPTANPIRSLHEHTREVHSADY 114 (317)
Q Consensus 38 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (317)
.|.+-|.+..+ .+.+. .. +....-.|+|+|+..++..+.+ ..|.++|+.++ +. ..+....+......|
T Consensus 170 ~l~~~d~dg~~--~~~~~--~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg---~~-~~lt~~~g~~~~~~~ 240 (419)
T PRK04043 170 NIVLADYTLTY--QKVIV--KG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTG---KK-EKIASSQGMLVVSDV 240 (419)
T ss_pred eEEEECCCCCc--eeEEc--cC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCC---cE-EEEecCCCcEEeeEE
Confidence 55555554443 22222 22 3677899999996545543333 46778887654 22 222234555667789
Q ss_pred ecCCCCEEEEEcCC--CEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCC--eEEEEeCCCCCceeeecc
Q 021121 115 NPTRRDSFITSSWD--DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDC--TLRIWDVREMGSTMIIPA 190 (317)
Q Consensus 115 ~~~~~~~l~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~ 190 (317)
+|||+.++++.+.+ ..|.++|+.+++. ..+..+........|+|++..++++....+ .|++.|+.+++..+....
T Consensus 241 SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~ 319 (419)
T PRK04043 241 SKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH 319 (419)
T ss_pred CCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC
Confidence 99998565665544 5688888877754 344433333445689999444555544444 588888877665333221
Q ss_pred CccceEEEEecCCCCcEEEEEecC---------CcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCe-
Q 021121 191 HEFEILACDWNKYDDCLIASASVD---------KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMT- 260 (317)
Q Consensus 191 ~~~~v~~i~~~~~~~~~l~~~~~d---------~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~- 260 (317)
.. ....|+| +++.++..... ..|.+.|+.++. ...+.... ......|+|+|+.++++....+.
T Consensus 320 -g~--~~~~~SP-DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~--~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~ 392 (419)
T PRK04043 320 -GK--NNSSVST-YKNYIVYSSRETNNEFGKNTFNLYLISTNSDY--IRRLTANG-VNQFPRFSSDGGSIMFIKYLGNQS 392 (419)
T ss_pred -CC--cCceECC-CCCEEEEEEcCCCcccCCCCcEEEEEECCCCC--eEECCCCC-CcCCeEECCCCCEEEEEEccCCcE
Confidence 11 1248999 88877766543 267888887764 34443332 33468899999965555444343
Q ss_pred -EEEEeccc
Q 021121 261 -VCLWDFMV 268 (317)
Q Consensus 261 -i~vwd~~~ 268 (317)
+.+.++..
T Consensus 393 ~L~~~~l~g 401 (419)
T PRK04043 393 ALGIIRLNY 401 (419)
T ss_pred EEEEEecCC
Confidence 55555544
No 278
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.40 E-value=1.5e-11 Score=93.69 Aligned_cols=249 Identities=17% Similarity=0.317 Sum_probs=170.1
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCC--------------cceeeeeecCCCCeeEEEecCC
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAP--------------ALTELVAFDTADGVYDLAWSES 71 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~ 71 (317)
....|+++.|.- .+.+++++.. .|+|.+|.-+.... .+.-+...+..+.|..+.|..+
T Consensus 25 ead~ItaVefd~--tg~YlatGDk------gGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~ 96 (460)
T COG5170 25 EADKITAVEFDE--TGLYLATGDK------GGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDD 96 (460)
T ss_pred ccceeeEEEecc--ccceEeecCC------CceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecC
Confidence 446788999988 6788888765 69999998765431 1111122234567899999764
Q ss_pred -CCCeEEEEEcCCeEEEEEeCCCC-----------------CC----------------------CCceee-ccCCcceE
Q 021121 72 -HDSLLIAAVADGSVKIYDTALPP-----------------TA----------------------NPIRSL-HEHTREVH 110 (317)
Q Consensus 72 -~~~~l~~~~~dg~i~v~~~~~~~-----------------~~----------------------~~~~~~-~~~~~~v~ 110 (317)
+...++..+.|.+|++|.+.... .+ .+.+.+ ..|.--+.
T Consensus 97 t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiN 176 (460)
T COG5170 97 TGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHIN 176 (460)
T ss_pred CCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEee
Confidence 44567777889999999876430 00 001111 35777788
Q ss_pred EEEEecCCCCEEEEEcCCCEEEEEEcCCCcee---EEeecc-----ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC
Q 021121 111 SADYNPTRRDSFITSSWDDTVKLWTVDRPTSV---RTFKEH-----AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM 182 (317)
Q Consensus 111 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~---~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 182 (317)
++.|+.+.. .++++. |=.|.+|+++-.... ..++.| ..-|++..|+|...+++.-.+..|.|++-|+|+.
T Consensus 177 SiS~NsD~e-t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~ 254 (460)
T COG5170 177 SISFNSDKE-TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQS 254 (460)
T ss_pred eeeecCchh-eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhh
Confidence 999998876 666654 789999998754222 222323 3458899999998888888999999999999953
Q ss_pred Cc------eee----------eccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCC----------
Q 021121 183 GS------TMI----------IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHG---------- 236 (317)
Q Consensus 183 ~~------~~~----------~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~---------- 236 (317)
.. +.. +......|..+.|++ +++++++-. --++++||.+..+.|+.+..-|.
T Consensus 255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~-ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~Y 332 (460)
T COG5170 255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSD-NGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVY 332 (460)
T ss_pred hhccCchhhhhhccCcccchhHHHHhhhhcceEEcC-CCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhh
Confidence 21 111 112234578899999 898888765 35899999999888888876553
Q ss_pred --Cce---eEEEecCCCCeeEEeeecCCeEEEEecc
Q 021121 237 --YAV---RKVKFSPHRRNLLASCSYDMTVCLWDFM 267 (317)
Q Consensus 237 --~~v---~~~~~~~~~~~~l~~~~~d~~i~vwd~~ 267 (317)
..| ..+.|+-+.++ +.+|+..+..-+|-+.
T Consensus 333 EnDaifdkFeisfSgd~~~-v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 333 ENDAIFDKFEISFSGDDKH-VLSGSYSNNFGIYPTD 367 (460)
T ss_pred hccceeeeEEEEecCCccc-ccccccccceeeeccc
Confidence 122 35778888874 7888887777777643
No 279
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.39 E-value=3.8e-09 Score=85.39 Aligned_cols=163 Identities=11% Similarity=0.132 Sum_probs=123.9
Q ss_pred CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC-eEEEEEeCCCCCCCCceeeccCCcceEEEEE
Q 021121 36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG-SVKIYDTALPPTANPIRSLHEHTREVHSADY 114 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (317)
.|+..|.+....- ....++...|.-..+.-+++ -++.|..|| .+-|+|...+ ....+...-+.|.++..
T Consensus 340 RGkaFi~~~~~~~-----~iqv~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~----e~kr~e~~lg~I~av~v 409 (668)
T COG4946 340 RGKAFIMRPWDGY-----SIQVGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGG----EVKRIEKDLGNIEAVKV 409 (668)
T ss_pred cCcEEEECCCCCe-----eEEcCCCCceEEEEEccCCc-ceEEeccCCceEEEEecCCc----eEEEeeCCccceEEEEE
Confidence 6788888765543 33346788899989988875 888899998 8999998765 44555666789999999
Q ss_pred ecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCC----eEEEEeCCCCCceeeecc
Q 021121 115 NPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDC----TLRIWDVREMGSTMIIPA 190 (317)
Q Consensus 115 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~ 190 (317)
+++|+ .++.+.....+.+.|++++.....-+...+-|+.+.|+|+ +..++-+-.+| .|+++|+..++....-.
T Consensus 410 s~dGK-~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~n-sr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT- 486 (668)
T COG4946 410 SPDGK-KVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPN-SRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT- 486 (668)
T ss_pred cCCCc-EEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCC-ceeEEEecCcceeeeeEEEEecCCCeEEEecC-
Confidence 99998 8999998999999999999876655666788999999998 88888766554 58999998876544332
Q ss_pred CccceEEEEecCCCCcEEEEEe
Q 021121 191 HEFEILACDWNKYDDCLIASAS 212 (317)
Q Consensus 191 ~~~~v~~i~~~~~~~~~l~~~~ 212 (317)
....=.+-+|.| ++++|.--+
T Consensus 487 ~ta~DfsPaFD~-d~ryLYfLs 507 (668)
T COG4946 487 PTAYDFSPAFDP-DGRYLYFLS 507 (668)
T ss_pred CcccccCcccCC-CCcEEEEEe
Confidence 333335667777 777665443
No 280
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=2.8e-11 Score=102.07 Aligned_cols=236 Identities=14% Similarity=0.165 Sum_probs=166.5
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCC------------CCCceeeccCCcceEEEEEecCCCCEEEEE
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPT------------ANPIRSLHEHTREVHSADYNPTRRDSFITS 125 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 125 (317)
+......|++|+... .++++|+.||.+++..+.+... ...-.++.+|++.|.-+.|+.+.+ .|-+.
T Consensus 12 PnnvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-KLTtS 89 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-KLTTS 89 (1189)
T ss_pred CCCceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-ccccc
Confidence 445568899999986 6999999999999998876421 112245789999999999998876 89999
Q ss_pred cCCCEEEEEEcCCCceeEEe--eccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCC
Q 021121 126 SWDDTVKLWTVDRPTSVRTF--KEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKY 203 (317)
Q Consensus 126 ~~dg~v~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 203 (317)
..+|.|.+|-+-.+.-...+ ...++-|.+++|+.+ +..++....||.|.+=.+...+ +.--.-.......+.|++
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~d-G~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~- 166 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLD-GTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSE- 166 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCC-CcEEEEEEccCCEEEEeeccce-ecchhcchheccceeecc-
Confidence 99999999998777543332 234667999999998 8888888899988876665332 111111112244788999
Q ss_pred CCcEEEEEecCCcEEEEEccCCCc------cEEE----EecCCCceeEEEec--------CCCCeeEEeeecCCeEEEEe
Q 021121 204 DDCLIASASVDKSIKIWDVRNYRV------PIAV----LNGHGYAVRKVKFS--------PHRRNLLASCSYDMTVCLWD 265 (317)
Q Consensus 204 ~~~~l~~~~~d~~i~v~d~~~~~~------~~~~----~~~~~~~v~~~~~~--------~~~~~~l~~~~~d~~i~vwd 265 (317)
+...++.+-..|.+.+||.+..-. +... +......|..+.|. |+.+ .|+.+-.+|.+.|-.
T Consensus 167 D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~nGr~QiMR 245 (1189)
T KOG2041|consen 167 DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYANGRMQIMR 245 (1189)
T ss_pred cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEEcCceehhhh
Confidence 888888888899999999764211 1111 11122235556653 4666 688888899988876
Q ss_pred cccccceeeeeecccceeEeEEEEeccCCeEEEeecC
Q 021121 266 FMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWD 302 (317)
Q Consensus 266 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 302 (317)
-.+...++-. ...-.+.++.|+++ +..|+.+|.|
T Consensus 246 ~eND~~Pvv~--dtgm~~vgakWnh~-G~vLAvcG~~ 279 (1189)
T KOG2041|consen 246 SENDPEPVVV--DTGMKIVGAKWNHN-GAVLAVCGND 279 (1189)
T ss_pred hcCCCCCeEE--ecccEeecceecCC-CcEEEEccCc
Confidence 5554433322 23367899999999 8899998864
No 281
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.37 E-value=3.2e-12 Score=94.82 Aligned_cols=200 Identities=14% Similarity=0.109 Sum_probs=125.8
Q ss_pred eEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce------------eEEeeccccceEEEEEecCCCCeEEEEeCCCeEEE
Q 021121 109 VHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS------------VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRI 176 (317)
Q Consensus 109 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 176 (317)
+..+.+..+. .|+++..++.+..+...++.+ .+.+..+.++-.+-+.+-. ++-+++++.||.+.+
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~-~t~V~~~~~dg~~~v 115 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMT-DNRVCIGYADGSLAV 115 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCccccccc-CCceEecCCCceEEE
Confidence 5555555432 566766666665554433322 2222223222222222222 567889999999999
Q ss_pred EeCCCCCcee-eeccCccceEEEEecCCCCcEEEEEe-----cCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCe
Q 021121 177 WDVREMGSTM-IIPAHEFEILACDWNKYDDCLIASAS-----VDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRN 250 (317)
Q Consensus 177 ~d~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~~~~-----~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 250 (317)
++.+....+. .+......-.+..+.. .++.+.++. .-+..+.|+++..+........- ..|++++-+|..++
T Consensus 116 ~s~~~~~~~~~~i~~~~~~~as~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~-~~v~~l~~hp~qq~ 193 (319)
T KOG4714|consen 116 FSTDKDLALMSRIPSIHSGSASRKICR-HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL-DAVTALCSHPAQQH 193 (319)
T ss_pred EechHHHhhhhhcccccccccccceee-cccEEecCCcceEeeccceeeeccccccccccccccc-ccchhhhCCccccc
Confidence 9987521111 1111111111122222 333443332 12345666666543322222222 34999999999988
Q ss_pred eEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121 251 LLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 251 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
++++|+.||.+.+||.++...+...+..|+.++..+-|+|.++..|+++++||.+..||-++.
T Consensus 194 ~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~ 256 (319)
T KOG4714|consen 194 LVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTT 256 (319)
T ss_pred EEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCc
Confidence 999999999999999999887888899999999999999998899999999999999998753
No 282
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.37 E-value=4.9e-09 Score=87.94 Aligned_cols=245 Identities=11% Similarity=0.021 Sum_probs=143.3
Q ss_pred CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcce-----E
Q 021121 36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREV-----H 110 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v-----~ 110 (317)
+|.++.+|..+++...+ ......+.+.... .+ ..++.+..+|.+..+|.+++ +.+.......... .
T Consensus 114 ~g~l~ald~~tG~~~W~----~~~~~~~~~~p~v-~~-~~v~v~~~~g~l~a~d~~tG---~~~W~~~~~~~~~~~~~~~ 184 (377)
T TIGR03300 114 KGEVIALDAEDGKELWR----AKLSSEVLSPPLV-AN-GLVVVRTNDGRLTALDAATG---ERLWTYSRVTPALTLRGSA 184 (377)
T ss_pred CCEEEEEECCCCcEeee----eccCceeecCCEE-EC-CEEEEECCCCeEEEEEcCCC---ceeeEEccCCCceeecCCC
Confidence 67788887766542111 1112222211111 12 36677778999999998876 3333332211111 1
Q ss_pred EEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecccc----c------e-EEEEEecCCCCeEEEEeCCCeEEEEeC
Q 021121 111 SADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAY----C------V-YNATWNPRHSDVFCSASGDCTLRIWDV 179 (317)
Q Consensus 111 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~----~------v-~~~~~~~~~~~~l~~~~~dg~i~i~d~ 179 (317)
+.... + . .++.+..+|.+..+|+++++.+........ . + ....+ . +..+++++.+|.++.+|.
T Consensus 185 sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~-~~~vy~~~~~g~l~a~d~ 258 (377)
T TIGR03300 185 SPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--D-GGQVYAVSYQGRVAALDL 258 (377)
T ss_pred CCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--E-CCEEEEEEcCCEEEEEEC
Confidence 11122 2 3 677888899999999999987654331100 0 0 01111 1 456778888999999999
Q ss_pred CCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec-CCCceeEEEecCCCCeeEEeeecC
Q 021121 180 REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG-HGYAVRKVKFSPHRRNLLASCSYD 258 (317)
Q Consensus 180 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d 258 (317)
++++.+...... ....... .+..+++++.+|.+..+|..+++. +..... ......+... .+. .+++++.+
T Consensus 259 ~tG~~~W~~~~~--~~~~p~~---~~~~vyv~~~~G~l~~~d~~tG~~-~W~~~~~~~~~~ssp~i--~g~-~l~~~~~~ 329 (377)
T TIGR03300 259 RSGRVLWKRDAS--SYQGPAV---DDNRLYVTDADGVVVALDRRSGSE-LWKNDELKYRQLTAPAV--VGG-YLVVGDFE 329 (377)
T ss_pred CCCcEEEeeccC--CccCceE---eCCEEEEECCCCeEEEEECCCCcE-EEccccccCCccccCEE--ECC-EEEEEeCC
Confidence 998876655421 1112222 345677778899999999988764 333211 1112222222 244 58888999
Q ss_pred CeEEEEecccccceeeeeecccceeE-eEEEEeccCCeEEEeecCCcEEEE
Q 021121 259 MTVCLWDFMVEDALVGRYDHHTEFAV-GVDMSVLVEGLLASTGWDELVYVW 308 (317)
Q Consensus 259 ~~i~vwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~dg~i~~w 308 (317)
|.+.++|..+++ .+..+..+...+. ...+. ++.|+.++.||.|+.|
T Consensus 330 G~l~~~d~~tG~-~~~~~~~~~~~~~~sp~~~---~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 330 GYLHWLSREDGS-FVARLKTDGSGIASPPVVV---GDGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEECCCCC-EEEEEEcCCCccccCCEEE---CCEEEEEeCCceEEEe
Confidence 999999998887 4455555543332 33333 3468888899999876
No 283
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=4e-10 Score=96.00 Aligned_cols=246 Identities=15% Similarity=0.158 Sum_probs=182.8
Q ss_pred CCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCC-----------CCEEEEEcCCC
Q 021121 61 DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTR-----------RDSFITSSWDD 129 (317)
Q Consensus 61 ~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~l~~~~~dg 129 (317)
..-.++.|+|.| ++|-|+. ..|.+-|...- +.+..+..|+..|+.+.|.|.. ..+++++.-.|
T Consensus 16 sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~---q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 16 SNRNAADWSPSG--LIAYGSH-SLVSVVDSRSL---QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred ccccccccCccc--eEEEecC-ceEEEEehhhh---hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 336778999987 7888875 46888887654 7788888999999999997632 23677888899
Q ss_pred EEEEEEcCCCceeEEeeccccceEEEEEecC---CCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCc
Q 021121 130 TVKLWTVDRPTSVRTFKEHAYCVYNATWNPR---HSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDC 206 (317)
Q Consensus 130 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 206 (317)
.|.+||...+..+..+..+..++..++|-+. ...++++-.....+.+|+..+|+.............|+.+.|.+.+
T Consensus 90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r 169 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR 169 (1062)
T ss_pred cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence 9999999999888899999999999999774 2256777777889999999999988887766667788999999888
Q ss_pred EEEEEecCCcEEEEEccCCCc------cEEEEecCCC-------------------------ceeEEEecCCCCeeEEee
Q 021121 207 LIASASVDKSIKIWDVRNYRV------PIAVLNGHGY-------------------------AVRKVKFSPHRRNLLASC 255 (317)
Q Consensus 207 ~l~~~~~d~~i~v~d~~~~~~------~~~~~~~~~~-------------------------~v~~~~~~~~~~~~l~~~ 255 (317)
.+..-+..|.+.+-+.-.... ..+....|.. ....++|+|.-++.++.
T Consensus 170 h~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi- 248 (1062)
T KOG1912|consen 170 HFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFI- 248 (1062)
T ss_pred eEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEE-
Confidence 888877788777776532221 1111112211 11245778887764443
Q ss_pred ecCCeEEEEecccccceeeeeecccceeEeEEEEeccC-CeEEEeecCCcEEEEecCCCC
Q 021121 256 SYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVE-GLLASTGWDELVYVWQQGMDP 314 (317)
Q Consensus 256 ~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~dg~i~~w~~~~~~ 314 (317)
.....+.++|++-.. .+....-..+.+.-+.+-|+.. +.|+..-.||.+.+|-....+
T Consensus 249 ~~prellv~dle~~~-~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~ 307 (1062)
T KOG1912|consen 249 TFPRELLVFDLEYEC-CLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEP 307 (1062)
T ss_pred EeccceEEEcchhhc-eeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccC
Confidence 346679999988765 4555555566677788888733 378888999999999877644
No 284
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.34 E-value=4.1e-10 Score=88.74 Aligned_cols=165 Identities=17% Similarity=0.201 Sum_probs=113.3
Q ss_pred EEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeC
Q 021121 12 SVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTA 91 (317)
Q Consensus 12 ~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~ 91 (317)
.+..+| .+++++.+.. +....++++....+..+......-...-+++.|..+. .....+..-|.+.-+|+-
T Consensus 67 ~~~~s~--~~~llAv~~~------~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~ 137 (390)
T KOG3914|consen 67 LVLTSD--SGRLVAVATS------SKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIRED-TSVLVADKAGDVYSFDIL 137 (390)
T ss_pred ccccCC--CceEEEEEeC------CCceEEEEEecCCCcceeeeEeecccCcceeeeeecc-ceEEEEeecCCceeeeee
Confidence 345566 5666666653 5566677766554323344444444455566666554 344444444444444443
Q ss_pred CCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee-ccccceEEEEEecCCCCeEEEEeC
Q 021121 92 LPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK-EHAYCVYNATWNPRHSDVFCSASG 170 (317)
Q Consensus 92 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~ 170 (317)
.... ......-+|-+.++.++|+||++ +++++..|..|++-.......+..+- +|+.-|..++.-++ ..|++++.
T Consensus 138 s~~~-~~~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~--~~LlS~sG 213 (390)
T KOG3914|consen 138 SADS-GRCEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN--YLLLSGSG 213 (390)
T ss_pred cccc-cCcchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC--ceeeecCC
Confidence 3211 23344568999999999999997 99999999999998877665555554 69999999999875 56889999
Q ss_pred CCeEEEEeCCCCCceeeec
Q 021121 171 DCTLRIWDVREMGSTMIIP 189 (317)
Q Consensus 171 dg~i~i~d~~~~~~~~~~~ 189 (317)
|++|++||+++++.+..+.
T Consensus 214 D~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CCcEEEEecccCCcccccc
Confidence 9999999999998886653
No 285
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.31 E-value=8.5e-09 Score=78.28 Aligned_cols=235 Identities=13% Similarity=0.205 Sum_probs=131.2
Q ss_pred EEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeee--eecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEe
Q 021121 13 VKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELV--AFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDT 90 (317)
Q Consensus 13 ~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~ 90 (317)
++.++ +|++++... |..|.|=..+++-....... ..+....-+.++|+||+ .+||.+...|+|++||+
T Consensus 3 ~~~~~--~Gk~lAi~q-------d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl 72 (282)
T PF15492_consen 3 LALSS--DGKLLAILQ-------DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDC-TLLAYAESTGTIRVFDL 72 (282)
T ss_pred eeecC--CCcEEEEEe-------ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCC-cEEEEEcCCCeEEEEec
Confidence 34455 788888877 66777766554322111111 11333456789999998 69999999999999998
Q ss_pred CCCCCC--CCceeec-cCCcceEEEEEecCC-----CCEEEEEcCCCEEEEEEcCCC-----ceeEEee---ccccceEE
Q 021121 91 ALPPTA--NPIRSLH-EHTREVHSADYNPTR-----RDSFITSSWDDTVKLWTVDRP-----TSVRTFK---EHAYCVYN 154 (317)
Q Consensus 91 ~~~~~~--~~~~~~~-~~~~~v~~~~~~~~~-----~~~l~~~~~dg~v~iwd~~~~-----~~~~~~~---~~~~~v~~ 154 (317)
....-. .+..... .-...|..+.|.+-. ...|++-..+|.++-|-+..+ +....+. .+...|.+
T Consensus 73 ~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~ 152 (282)
T PF15492_consen 73 MGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINS 152 (282)
T ss_pred ccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeE
Confidence 743100 0111111 124567777775432 225777777888888876432 2222322 23568999
Q ss_pred EEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEE-EEEecCC------cEEEEEccCCCc
Q 021121 155 ATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLI-ASASVDK------SIKIWDVRNYRV 227 (317)
Q Consensus 155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~~~~~d~------~i~v~d~~~~~~ 227 (317)
+.++|. .++|++|+.... +.+. -+.....+++=..-.....+. ++..+|+ +-.+|.+-+.+.
T Consensus 153 ~vy~p~-h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~ 221 (282)
T PF15492_consen 153 AVYHPK-HRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKF 221 (282)
T ss_pred EEEcCC-CCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceee
Confidence 999998 566666654322 0000 001111222222111011111 1111111 112333222111
Q ss_pred cEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121 228 PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED 270 (317)
Q Consensus 228 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~ 270 (317)
..........|..|..||+|. +|++...+|.|.+|++.+.+
T Consensus 222 -fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 222 -FSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred -eeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcch
Confidence 111122456899999999999 89999999999999998765
No 286
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.31 E-value=1.6e-08 Score=81.90 Aligned_cols=220 Identities=10% Similarity=0.081 Sum_probs=125.4
Q ss_pred CceEEEEecCCCCCcceeeeeecC--------CCCeeEEEecCCCCCeEEEEE-c-CCeEEEEEeCCCCCCCCceeeccC
Q 021121 36 NGRVHVLDLSPAAPALTELVAFDT--------ADGVYDLAWSESHDSLLIAAV-A-DGSVKIYDTALPPTANPIRSLHEH 105 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~l~~~~-~-dg~i~v~~~~~~~~~~~~~~~~~~ 105 (317)
+..|.+||..+... +..... ......++++|+|. +|++.. . +..|.+.|+... +.+..+.-
T Consensus 76 ~d~V~v~D~~t~~~----~~~i~~p~~p~~~~~~~~~~~~ls~dgk-~l~V~n~~p~~~V~VvD~~~~---kvv~ei~v- 146 (352)
T TIGR02658 76 TDYVEVIDPQTHLP----IADIELPEGPRFLVGTYPWMTSLTPDNK-TLLFYQFSPSPAVGVVDLEGK---AFVRMMDV- 146 (352)
T ss_pred CCEEEEEECccCcE----EeEEccCCCchhhccCccceEEECCCCC-EEEEecCCCCCEEEEEECCCC---cEEEEEeC-
Confidence 67999999988652 222222 22334789999984 666554 4 789999999876 44444432
Q ss_pred CcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeE-----Eeec-----cccceEEEEEecCCCCeEEEEeCCCeEE
Q 021121 106 TREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVR-----TFKE-----HAYCVYNATWNPRHSDVFCSASGDCTLR 175 (317)
Q Consensus 106 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~-----~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 175 (317)
.....-...+++. ..+-+.||......+.+..... .+.. ...+ .|.+.++..+.+... |.|.
T Consensus 147 p~~~~vy~t~e~~---~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~ 218 (352)
T TIGR02658 147 PDCYHIFPTANDT---FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIF 218 (352)
T ss_pred CCCcEEEEecCCc---cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEE
Confidence 1111112222211 1122334444443332211111 1111 0112 445633666666555 9999
Q ss_pred EEeCCCCC-----ceeeecc-------CccceEEEEecCCCCcEEEEEe----------cCCcEEEEEccCCCccEEEEe
Q 021121 176 IWDVREMG-----STMIIPA-------HEFEILACDWNKYDDCLIASAS----------VDKSIKIWDVRNYRVPIAVLN 233 (317)
Q Consensus 176 i~d~~~~~-----~~~~~~~-------~~~~v~~i~~~~~~~~~l~~~~----------~d~~i~v~d~~~~~~~~~~~~ 233 (317)
+.|+...+ ....+.. ......-++++| +++.+.+.. ..+.|.++|..+.+. +..+.
T Consensus 219 ~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv-i~~i~ 296 (352)
T TIGR02658 219 QIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR-LRKIE 296 (352)
T ss_pred EEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCccccccCCCCEEEEEECCCCeE-EEEEe
Confidence 99965432 2222211 122234499999 666666532 124799999998764 44444
Q ss_pred cCCCceeEEEecCCCC-eeEEeeecCCeEEEEecccccceeeee
Q 021121 234 GHGYAVRKVKFSPHRR-NLLASCSYDMTVCLWDFMVEDALVGRY 276 (317)
Q Consensus 234 ~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~ 276 (317)
. ...+..++++|+++ .++++...++.|.++|..+.+ .+...
T Consensus 297 v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k-~i~~i 338 (352)
T TIGR02658 297 L-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK-ELSSV 338 (352)
T ss_pred C-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe-EEeee
Confidence 2 34788999999999 544455578889999999887 33444
No 287
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.30 E-value=2.1e-08 Score=84.15 Aligned_cols=254 Identities=12% Similarity=0.066 Sum_probs=147.0
Q ss_pred CceEEEEecCCCCCcceeeeeecCCCCee-EEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEE
Q 021121 36 NGRVHVLDLSPAAPALTELVAFDTADGVY-DLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADY 114 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (317)
+|.|.-+|..+++...+. .....+. .... ++ ..+++++.+|.+..+|..++ +.+..... ...+.+...
T Consensus 74 ~g~v~a~d~~tG~~~W~~----~~~~~~~~~p~v--~~-~~v~v~~~~g~l~ald~~tG---~~~W~~~~-~~~~~~~p~ 142 (377)
T TIGR03300 74 DGTVVALDAETGKRLWRV----DLDERLSGGVGA--DG-GLVFVGTEKGEVIALDAEDG---KELWRAKL-SSEVLSPPL 142 (377)
T ss_pred CCeEEEEEccCCcEeeee----cCCCCcccceEE--cC-CEEEEEcCCCEEEEEECCCC---cEeeeecc-CceeecCCE
Confidence 788998988766532211 1111211 1122 33 47778888999999998766 33333322 122221111
Q ss_pred ecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceE-----EEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec
Q 021121 115 NPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVY-----NATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP 189 (317)
Q Consensus 115 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 189 (317)
.. +. .++.++.+|.+..||.++++.+.++........ +.... +..++.+..+|.+..+|.++++.+....
T Consensus 143 v~-~~-~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~---~~~v~~~~~~g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 143 VA-NG-LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA---DGGVLVGFAGGKLVALDLQTGQPLWEQR 217 (377)
T ss_pred EE-CC-EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE---CCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 11 23 677788899999999999988777654322111 11111 2467788889999999999987665432
Q ss_pred cCc----cc---eEEEEecC-CCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeE
Q 021121 190 AHE----FE---ILACDWNK-YDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTV 261 (317)
Q Consensus 190 ~~~----~~---v~~i~~~~-~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 261 (317)
... .. ...+.-+| ..+..+++++.+|.++.||.++++. +.... .. ....... .+. .++.++.+|.+
T Consensus 218 ~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~-~W~~~-~~-~~~~p~~--~~~-~vyv~~~~G~l 291 (377)
T TIGR03300 218 VALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV-LWKRD-AS-SYQGPAV--DDN-RLYVTDADGVV 291 (377)
T ss_pred cccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE-EEeec-cC-CccCceE--eCC-EEEEECCCCeE
Confidence 110 00 00011111 0234677778899999999988764 33332 11 1122222 344 46677889999
Q ss_pred EEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121 262 CLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP 314 (317)
Q Consensus 262 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~ 314 (317)
..+|..+++.+................ . +..|++++.+|.|+++|..+.+
T Consensus 292 ~~~d~~tG~~~W~~~~~~~~~~ssp~i--~-g~~l~~~~~~G~l~~~d~~tG~ 341 (377)
T TIGR03300 292 VALDRRSGSELWKNDELKYRQLTAPAV--V-GGYLVVGDFEGYLHWLSREDGS 341 (377)
T ss_pred EEEECCCCcEEEccccccCCccccCEE--E-CCEEEEEeCCCEEEEEECCCCC
Confidence 999998887443221111111222222 2 5688889999999999987653
No 288
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.29 E-value=9.5e-08 Score=75.15 Aligned_cols=222 Identities=14% Similarity=0.153 Sum_probs=141.8
Q ss_pred EEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEec-CCCCCeEEEEEcCCeEEEEEe
Q 021121 12 SVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWS-ESHDSLLIAAVADGSVKIYDT 90 (317)
Q Consensus 12 ~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~v~~~ 90 (317)
+..|.+. .+.+..+-.. .+.|+.|+..... ........ ...+++. +++ .++.+...+ +.++|.
T Consensus 4 gp~~d~~-~g~l~~~D~~------~~~i~~~~~~~~~-----~~~~~~~~-~~G~~~~~~~g--~l~v~~~~~-~~~~d~ 67 (246)
T PF08450_consen 4 GPVWDPR-DGRLYWVDIP------GGRIYRVDPDTGE-----VEVIDLPG-PNGMAFDRPDG--RLYVADSGG-IAVVDP 67 (246)
T ss_dssp EEEEETT-TTEEEEEETT------TTEEEEEETTTTE-----EEEEESSS-EEEEEEECTTS--EEEEEETTC-EEEEET
T ss_pred ceEEECC-CCEEEEEEcC------CCEEEEEECCCCe-----EEEEecCC-CceEEEEccCC--EEEEEEcCc-eEEEec
Confidence 5678885 4666666543 7899999987653 11123333 6777887 554 556665555 666687
Q ss_pred CCCCCCCCceeec--c-CCcceEEEEEecCCCCEEEEEcCC--------CEEEEEEcCCCceeEEeeccccceEEEEEec
Q 021121 91 ALPPTANPIRSLH--E-HTREVHSADYNPTRRDSFITSSWD--------DTVKLWTVDRPTSVRTFKEHAYCVYNATWNP 159 (317)
Q Consensus 91 ~~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~l~~~~~d--------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 159 (317)
.++ ..+.+.... . .....+.+++.|+|. +.++.... |.|..++.. ++... +...-...+.++|+|
T Consensus 68 ~~g-~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~~~pNGi~~s~ 143 (246)
T PF08450_consen 68 DTG-KVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGLGFPNGIAFSP 143 (246)
T ss_dssp TTT-EEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEESSEEEEEEET
T ss_pred CCC-cEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEE-EecCcccccceEECC
Confidence 664 222222221 1 356788999999998 66665433 668888877 44433 333455689999999
Q ss_pred CCCCeEEEEeCCCeEEEEeCCCCCc-e---eee---ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEE
Q 021121 160 RHSDVFCSASGDCTLRIWDVREMGS-T---MII---PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVL 232 (317)
Q Consensus 160 ~~~~~l~~~~~dg~i~i~d~~~~~~-~---~~~---~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 232 (317)
++..++++-+..+.|..+++..... + ..+ .......-.+++.. ++++.++....+.|.++|.+ ++. +..+
T Consensus 144 dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G~~-~~~i 220 (246)
T PF08450_consen 144 DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD-GKL-LREI 220 (246)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT-SCE-EEEE
T ss_pred cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC-ccE-EEEE
Confidence 9444556778889999999874332 1 112 22223477899998 89998888889999999987 453 5555
Q ss_pred ecCCCceeEEEec-CCCCeeEEeee
Q 021121 233 NGHGYAVRKVKFS-PHRRNLLASCS 256 (317)
Q Consensus 233 ~~~~~~v~~~~~~-~~~~~~l~~~~ 256 (317)
......+++++|. |+.+.|++|.+
T Consensus 221 ~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 221 ELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp E-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred cCCCCCEEEEEEECCCCCEEEEEeC
Confidence 5444588999994 66666666643
No 289
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.29 E-value=1.2e-10 Score=91.74 Aligned_cols=154 Identities=14% Similarity=0.122 Sum_probs=106.6
Q ss_pred EEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc----eeeeccCccceEEEEecCCCCcEEEEEecCCc---EEEEEccCC
Q 021121 153 YNATWNPRHSDVFCSASGDCTLRIWDVREMGS----TMIIPAHEFEILACDWNKYDDCLIASASVDKS---IKIWDVRNY 225 (317)
Q Consensus 153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~---i~v~d~~~~ 225 (317)
..+..++. +.+++++..+....+++.+.... ..... -....+++.+.. +......+..-|. +.+|....+
T Consensus 66 ~~~~~s~~-~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 66 ALVLTSDS-GRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccCCC-ceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeee-ccceEEEEeecCCceeeeeeccccc
Confidence 34445555 88888888888877777765433 11111 122233444444 3333333333344 444444432
Q ss_pred CccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcE
Q 021121 226 RVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELV 305 (317)
Q Consensus 226 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 305 (317)
+...+.+|-+.++.++|+||++ +|+++..|..|++-........-...-+|...|..++.-+ +..|+++|.|++|
T Consensus 143 --~~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tl 217 (390)
T KOG3914|consen 143 --RCEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTL 217 (390)
T ss_pred --CcchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcE
Confidence 3456678999999999999998 7999999999999887776545555668999999999988 4679999999999
Q ss_pred EEEecCCCC
Q 021121 306 YVWQQGMDP 314 (317)
Q Consensus 306 ~~w~~~~~~ 314 (317)
++||+....
T Consensus 218 r~Wd~~sgk 226 (390)
T KOG3914|consen 218 RLWDITSGK 226 (390)
T ss_pred EEEecccCC
Confidence 999998754
No 290
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.29 E-value=4.1e-09 Score=79.04 Aligned_cols=224 Identities=14% Similarity=0.116 Sum_probs=142.4
Q ss_pred CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEe
Q 021121 36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN 115 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 115 (317)
.|...+|...+......... .+...|+-+.-.-+...-+..++.|.++++.+++.+..... .....-.+.+++++
T Consensus 93 ~g~fd~~~~~tn~~h~~~cd--~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~---~h~~~~~~ns~~~s 167 (344)
T KOG4532|consen 93 SGQFDLFACNTNDGHLYQCD--VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA---VHNQNLTQNSLHYS 167 (344)
T ss_pred cceeeeecccCcccceeeec--ccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce---eeccccceeeeEEc
Confidence 78999999886653332221 34444433322223334577788899999999876522211 11111338889999
Q ss_pred cCCCCEEEEEcCCCEEEEEEcCCCc-ee-E-EeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCcee-----e
Q 021121 116 PTRRDSFITSSWDDTVKLWTVDRPT-SV-R-TFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM-----I 187 (317)
Q Consensus 116 ~~~~~~l~~~~~dg~v~iwd~~~~~-~~-~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----~ 187 (317)
++++ ++++.+....|..|.+.... .+ . .....+..-.+..|+.. ...+|++..||++.|||+|...... +
T Consensus 168 nd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~-~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sst 245 (344)
T KOG4532|consen 168 NDPS-WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN-DLQFAVVFQDGTCAIYDVRNMATPMAEISST 245 (344)
T ss_pred CCCc-eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccC-cceEEEEecCCcEEEEEecccccchhhhccc
Confidence 9998 88888888999999887542 22 2 22233445677889887 7899999999999999999875433 2
Q ss_pred eccCccceEEEEecCCCC-cEEEEEecCCcEEEEEccCCCccEEEE------ecCC-CceeEEEecCCCCeeEEeeecCC
Q 021121 188 IPAHEFEILACDWNKYDD-CLIASASVDKSIKIWDVRNYRVPIAVL------NGHG-YAVRKVKFSPHRRNLLASCSYDM 259 (317)
Q Consensus 188 ~~~~~~~v~~i~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~------~~~~-~~v~~~~~~~~~~~~l~~~~~d~ 259 (317)
-+.|.+.++.+.|++... .+|+..-.-+.+.+.|+|+........ ..|. ..|..-.|+.++.. +.+.+.+
T Consensus 246 rp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s-~~v~~e~- 323 (344)
T KOG4532|consen 246 RPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENES-NDVKNEL- 323 (344)
T ss_pred CCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcc-cccccch-
Confidence 245788999999997322 355555556789999999976422221 1122 23667777776664 3333322
Q ss_pred eEEEEeccc
Q 021121 260 TVCLWDFMV 268 (317)
Q Consensus 260 ~i~vwd~~~ 268 (317)
.+.=|++.+
T Consensus 324 ~~ae~ni~s 332 (344)
T KOG4532|consen 324 QGAEYNILS 332 (344)
T ss_pred hhheeeccc
Confidence 234455443
No 291
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.28 E-value=6.5e-08 Score=76.07 Aligned_cols=219 Identities=10% Similarity=0.057 Sum_probs=138.4
Q ss_pred EEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEe-cCCCCEEEEEcCCCEEEEEEcCCCceeE
Q 021121 65 DLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN-PTRRDSFITSSWDDTVKLWTVDRPTSVR 143 (317)
Q Consensus 65 ~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 143 (317)
+..|.+....++++-...+.|..|+...+ ....+.. .. ...+++. +++ .++.+...+ +.++|+.+++...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~----~~~~~~~-~~-~~G~~~~~~~g--~l~v~~~~~-~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG----EVEVIDL-PG-PNGMAFDRPDG--RLYVADSGG-IAVVDPDTGKVTV 74 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT----EEEEEES-SS-EEEEEEECTTS--EEEEEETTC-EEEEETTTTEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC----eEEEEec-CC-CceEEEEccCC--EEEEEEcCc-eEEEecCCCcEEE
Confidence 56788844467777777899999997654 2222222 22 6777787 564 455555544 4555998885544
Q ss_pred Eeec-----cccceEEEEEecCCCCeEEEEeCC--------CeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEE-E
Q 021121 144 TFKE-----HAYCVYNATWNPRHSDVFCSASGD--------CTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLI-A 209 (317)
Q Consensus 144 ~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~ 209 (317)
.... ....++.+++.|+ +++.++.... |.|..++.. ++..... ..-...+.++|+| +++.| +
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~-G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~-dg~~lyv 150 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPD-GNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSP-DGKTLYV 150 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TT-S-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEET-TSSEEEE
T ss_pred EeeccCCCcccCCCceEEEcCC-CCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECC-cchheee
Confidence 3332 3467899999999 7777765543 567888876 4433333 2344568999999 77655 5
Q ss_pred EEecCCcEEEEEccCCCccE---E---EEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeeccccee
Q 021121 210 SASVDKSIKIWDVRNYRVPI---A---VLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFA 283 (317)
Q Consensus 210 ~~~~d~~i~v~d~~~~~~~~---~---~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v 283 (317)
+-+..+.|..|++......+ . .+....+..-.+++..+|. +.++.-..+.|.+++.+ ++ ++..+.-....+
T Consensus 151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~-G~-~~~~i~~p~~~~ 227 (246)
T PF08450_consen 151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPD-GK-LLREIELPVPRP 227 (246)
T ss_dssp EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SC-EEEEEE-SSSSE
T ss_pred cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCC-cc-EEEEEcCCCCCE
Confidence 66778889999997543211 1 1222223478899999997 66666678899999977 54 455555444578
Q ss_pred EeEEEE-eccCCeEEEe
Q 021121 284 VGVDMS-VLVEGLLAST 299 (317)
Q Consensus 284 ~~~~~~-~~~~~~l~s~ 299 (317)
++++|. ++...+++|.
T Consensus 228 t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 228 TNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEESTTSSEEEEEE
T ss_pred EEEEEECCCCCEEEEEe
Confidence 999995 4423355544
No 292
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=2.2e-08 Score=84.30 Aligned_cols=195 Identities=10% Similarity=-0.023 Sum_probs=118.1
Q ss_pred ceEEEEEecCCCCEEEE-EcC--CCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCC--CeEEEEeCCCC
Q 021121 108 EVHSADYNPTRRDSFIT-SSW--DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGD--CTLRIWDVREM 182 (317)
Q Consensus 108 ~v~~~~~~~~~~~~l~~-~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~ 182 (317)
......|+|+++..++. ... +..|.++|+.+++...... ..+......|+|++..++++.+.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 77889999999843443 322 4579999998886654433 455566788999955565555544 46888888776
Q ss_pred CceeeeccCccceEEEEecCCCCcEEEEEec-CC--cEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecC-
Q 021121 183 GSTMIIPAHEFEILACDWNKYDDCLIASASV-DK--SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYD- 258 (317)
Q Consensus 183 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d- 258 (317)
+. ..+..+........|+| +++.|+..+. .+ .|++.|+.+++. ..+..... ....|+|+|+.++++....
T Consensus 268 ~~-~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~ 341 (419)
T PRK04043 268 TL-TQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSV--EQVVFHGK--NNSSVSTYKNYIVYSSRETN 341 (419)
T ss_pred cE-EEcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCe--EeCccCCC--cCceECCCCCEEEEEEcCCC
Confidence 53 34443333334568999 7876665553 33 577888876553 22221111 1248999999655555433
Q ss_pred -------CeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCc--EEEEecCC
Q 021121 259 -------MTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDEL--VYVWQQGM 312 (317)
Q Consensus 259 -------~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--i~~w~~~~ 312 (317)
..|.+.|+.+++. ..+... .......|+|++..++++....+. +.+.+++.
T Consensus 342 ~~~~~~~~~I~v~d~~~g~~--~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 342 NEFGKNTFNLYLISTNSDYI--RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred cccCCCCcEEEEEECCCCCe--EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 3678888877652 223222 223458899994434444433343 44555544
No 293
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=4.6e-11 Score=98.07 Aligned_cols=205 Identities=17% Similarity=0.227 Sum_probs=143.5
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCC----CCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEE
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPT----ANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKL 133 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i 133 (317)
+|.+.|+.++--.+ ++-+++++.|.+|++|.++.... ..+..+++.|+.+|.++.|..+.+ ++++ -||-|.+
T Consensus 733 GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~S--cD~giHl 808 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIAS--CDGGIHL 808 (1034)
T ss_pred CcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeee--ccCccee
Confidence 67777877765544 46899999999999999986432 235667889999999999998765 5554 4789999
Q ss_pred EEcCCCceeEEeec--cccceEEEEEecC-CCCeEEE-EeCCCeEEEEeCCCCCceeeec-----cCccceEEEEecCCC
Q 021121 134 WTVDRPTSVRTFKE--HAYCVYNATWNPR-HSDVFCS-ASGDCTLRIWDVREMGSTMIIP-----AHEFEILACDWNKYD 204 (317)
Q Consensus 134 wd~~~~~~~~~~~~--~~~~v~~~~~~~~-~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~-----~~~~~v~~i~~~~~~ 204 (317)
||.--++.+..+.. ..+.+..+...++ +..++++ ++...+|+++|.+..+-...++ +...-+++++..+ .
T Consensus 809 WDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~ 887 (1034)
T KOG4190|consen 809 WDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-K 887 (1034)
T ss_pred ecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-C
Confidence 99877766553321 1223333333333 2444444 4788999999999887665554 3345588999999 9
Q ss_pred CcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEE-Eeccccc
Q 021121 205 DCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCL-WDFMVED 270 (317)
Q Consensus 205 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~v-wd~~~~~ 270 (317)
|+.++++-.+|.|.+.|.++++. +.....-......++ .|..+ .|+....|.++.+ |-...+.
T Consensus 888 GN~lAa~LSnGci~~LDaR~G~v-INswrpmecdllqla-apsdq-~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 888 GNKLAAALSNGCIAILDARNGKV-INSWRPMECDLLQLA-APSDQ-ALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred cchhhHHhcCCcEEEEecCCCce-eccCCcccchhhhhc-CchhH-HHHhhcccceeEeeehhcCCe
Confidence 99999999999999999999874 444444333333333 24444 5777777888888 8765543
No 294
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=2e-11 Score=100.18 Aligned_cols=202 Identities=17% Similarity=0.233 Sum_probs=140.2
Q ss_pred ceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC-------ceeEEeeccccceEEEEEecCCCCeEEEEeCC
Q 021121 99 IRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP-------TSVRTFKEHAYCVYNATWNPRHSDVFCSASGD 171 (317)
Q Consensus 99 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 171 (317)
+..+.+|...|..++--.+.+ .+++++.|.+|++|.++.. .+..+++.|+.+|.++.|..+ .+.++ +.|
T Consensus 728 L~nf~GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~-lr~i~--ScD 803 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD-LRSIA--SCD 803 (1034)
T ss_pred eecccCcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec-cceee--ecc
Confidence 455778999998886654444 7999999999999998642 466788899999999999987 55654 458
Q ss_pred CeEEEEeCCCCCceeeecc--CccceEEEEecCC-CCcEE-EEEecCCcEEEEEccCCCccEEEE-----ecCCCceeEE
Q 021121 172 CTLRIWDVREMGSTMIIPA--HEFEILACDWNKY-DDCLI-ASASVDKSIKIWDVRNYRVPIAVL-----NGHGYAVRKV 242 (317)
Q Consensus 172 g~i~i~d~~~~~~~~~~~~--~~~~v~~i~~~~~-~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~-----~~~~~~v~~~ 242 (317)
|.|.+||.--++++..+.. ..+.+..+..-|. +..++ +.++...+++++|.+..+- ...+ .+.+..++++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~-~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEW-TCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccc-eeeEEeccCCCCchheeEE
Confidence 8999999887776654321 1222233333232 33344 4447889999999998653 2222 3445678999
Q ss_pred EecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEE-Ee
Q 021121 243 KFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYV-WQ 309 (317)
Q Consensus 243 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~-w~ 309 (317)
+..|.|. .++++-.+|.|.+.|.++++ ++...+..+-....++- |. ++.|+....|.++.+ |.
T Consensus 883 aVa~~GN-~lAa~LSnGci~~LDaR~G~-vINswrpmecdllqlaa-ps-dq~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 883 AVADKGN-KLAAALSNGCIAILDARNGK-VINSWRPMECDLLQLAA-PS-DQALAQSALDHSLAVNWH 946 (1034)
T ss_pred EeccCcc-hhhHHhcCCcEEEEecCCCc-eeccCCcccchhhhhcC-ch-hHHHHhhcccceeEeeeh
Confidence 9999998 69999999999999999987 55555554444444432 32 456666666666666 54
No 295
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.22 E-value=6.3e-10 Score=96.40 Aligned_cols=181 Identities=18% Similarity=0.179 Sum_probs=139.3
Q ss_pred CeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceE
Q 021121 74 SLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVY 153 (317)
Q Consensus 74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 153 (317)
..++.|+-...+..+|+.+. +..+...-..+.|.-++.+ ++ ++.+|...|+|.+-|.++.+.++++..|.+.+.
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~---~e~r~~~v~a~~v~imR~N--nr-~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTE---KETRTTNVSASGVTIMRYN--NR-NLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS 221 (1118)
T ss_pred cceeecchhhheeeeecccc---eeeeeeeccCCceEEEEec--Cc-EEEeecccceEEeecCCcCceeeeeecccccee
Confidence 45666777777888888765 3333333333345555544 44 899999999999999999999999999999999
Q ss_pred EEEEecCCCCeEEEEeC---------CCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEE---
Q 021121 154 NATWNPRHSDVFCSASG---------DCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWD--- 221 (317)
Q Consensus 154 ~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d--- 221 (317)
.+... +++|++++. |..|+|||+|..+.+..+.-+..+ .-+.|+|.-...+++++..|...+-|
T Consensus 222 DfDv~---GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 222 DFDVQ---GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred eeecc---CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccc
Confidence 88776 788888875 455899999998877766644444 56788886677888999999999999
Q ss_pred ccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEe
Q 021121 222 VRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265 (317)
Q Consensus 222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd 265 (317)
+.+....+......+..+..+.+++++. .++.|..+|.|.+|-
T Consensus 298 lsNP~~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 298 LSNPPAGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWA 340 (1118)
T ss_pred cCCCccceeEEccCCCcceeEEecCCCc-eEEEecccCcEeeec
Confidence 4444333444555566799999999998 799999999999997
No 296
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.20 E-value=1.5e-08 Score=82.60 Aligned_cols=236 Identities=14% Similarity=0.166 Sum_probs=146.9
Q ss_pred EEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCC-eEEE-----EEcCCeE
Q 021121 12 SVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDS-LLIA-----AVADGSV 85 (317)
Q Consensus 12 ~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~-----~~~dg~i 85 (317)
-+.|+- ++.+++-.. ...++|+++. .+-...+...+ ...+|....|+|.++. .|+. .+..+.+
T Consensus 136 ~~k~s~--~D~y~ARvv-------~~sl~i~e~t-~n~~~~p~~~l-r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~ 204 (561)
T COG5354 136 VLKFSI--DDKYVARVV-------GSSLYIHEIT-DNIEEHPFKNL-RPVGILDFSISPEGNHDELAYWTPEKLNKPAMV 204 (561)
T ss_pred eeeeee--cchhhhhhc-------cCeEEEEecC-CccccCchhhc-cccceeeEEecCCCCCceEEEEccccCCCCcEE
Confidence 356666 344443332 3489999973 32112222211 2467899999997432 2332 3557889
Q ss_pred EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEc----------CCCEEEEEEcCCCceeEEeeccccceEEE
Q 021121 86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSS----------WDDTVKLWTVDRPTSVRTFKEHAYCVYNA 155 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~~~~v~~~ 155 (317)
++|.+... ..+..-.-....=..+.|++.|..+++-.- ....+.++++..... .......++|...
T Consensus 205 ~i~sIp~~---s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf 280 (561)
T COG5354 205 RILSIPKN---SVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDF 280 (561)
T ss_pred EEEEccCC---CeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceee
Confidence 99998754 333222222233356788888873333221 125688888874433 2222568899999
Q ss_pred EEecCCCCeEEE--EeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecC---CcEEEEEccCCCccEE
Q 021121 156 TWNPRHSDVFCS--ASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVD---KSIKIWDVRNYRVPIA 230 (317)
Q Consensus 156 ~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~ 230 (317)
+|.|. ++.+++ |..+-.+.++|++.. .... ..+..=+.+.|+| .+++++.++.| |.+-+||.........
T Consensus 281 ~W~p~-S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp-~~r~il~agF~nl~gni~i~~~~~rf~~~~ 355 (561)
T COG5354 281 TWEPL-SSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSP-HERYILFAGFDNLQGNIEIFDPAGRFKVAG 355 (561)
T ss_pred eeccc-CCceeEEecccccceeecccccc-eEEe--cCCcccccccccC-cccEEEEecCCccccceEEeccCCceEEEE
Confidence 99998 555444 357888999999865 3222 3344556788999 88888887766 5799999887554444
Q ss_pred EEecCCCceeEEEecCCCCeeEEeee------cCCeEEEEeccccc
Q 021121 231 VLNGHGYAVRKVKFSPHRRNLLASCS------YDMTVCLWDFMVED 270 (317)
Q Consensus 231 ~~~~~~~~v~~~~~~~~~~~~l~~~~------~d~~i~vwd~~~~~ 270 (317)
.+.+.+ .+-+.|+|+++. +.+.. .|..|+|||+....
T Consensus 356 ~~~~~n--~s~~~wspd~qF-~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 356 AFNGLN--TSYCDWSPDGQF-YDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred EeecCC--ceEeeccCCceE-EEecCCCcccccCcceEEEEecCch
Confidence 555543 455789999994 44432 47789999987643
No 297
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.18 E-value=1.8e-07 Score=71.26 Aligned_cols=228 Identities=11% Similarity=0.084 Sum_probs=129.4
Q ss_pred EEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceee---ccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCcee
Q 021121 66 LAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSL---HEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSV 142 (317)
Q Consensus 66 ~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 142 (317)
++.+.+| ++||. -.|..|.|-..+.+ -...+... +.....=..++|+||+. +||.+...|+|+++|+.. ..+
T Consensus 3 ~~~~~~G-k~lAi-~qd~~iEiRsa~Dd-f~si~~kcqVpkD~~PQWRkl~WSpD~t-lLa~a~S~G~i~vfdl~g-~~l 77 (282)
T PF15492_consen 3 LALSSDG-KLLAI-LQDQCIEIRSAKDD-FSSIIGKCQVPKDPNPQWRKLAWSPDCT-LLAYAESTGTIRVFDLMG-SEL 77 (282)
T ss_pred eeecCCC-cEEEE-EeccEEEEEeccCC-chheeEEEecCCCCCchheEEEECCCCc-EEEEEcCCCeEEEEeccc-cee
Confidence 4556677 35554 45677777655432 11111221 22233456799999998 999999999999999975 333
Q ss_pred EEeec-------cccceEEEEEecCC-----CCeEEEEeCCCeEEEEeCCCC-----Cceeeec---cCccceEEEEecC
Q 021121 143 RTFKE-------HAYCVYNATWNPRH-----SDVFCSASGDCTLRIWDVREM-----GSTMIIP---AHEFEILACDWNK 202 (317)
Q Consensus 143 ~~~~~-------~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~---~~~~~v~~i~~~~ 202 (317)
..+.. ....|..+.|.+.. ...|++-..+|.++-|-+..+ +....+. .+...|.++.++|
T Consensus 78 f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p 157 (282)
T PF15492_consen 78 FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP 157 (282)
T ss_pred EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC
Confidence 33332 23456777776542 234666777888877765322 1222222 2356899999999
Q ss_pred CCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeE-EeeecCCe------EEEEecccccceeee
Q 021121 203 YDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLL-ASCSYDMT------VCLWDFMVEDALVGR 275 (317)
Q Consensus 203 ~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~d~~------i~vwd~~~~~~~~~~ 275 (317)
..++|++|+.... ++. . -.+....+++-..-.+.+++. ++...|+. -.+|.+-+.+ ....
T Consensus 158 -~h~LLlVgG~~~~------~~~---~--s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~-~fs~ 224 (282)
T PF15492_consen 158 -KHRLLLVGGCEQN------QDG---M--SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFK-FFSR 224 (282)
T ss_pred -CCCEEEEeccCCC------CCc---c--ccccccCceEEEEcCCCCcEEEccccCccccccccccceeecccee-eeec
Confidence 7677776664332 000 0 011122233322222222222 12222221 1233333222 2222
Q ss_pred eecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121 276 YDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 276 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
.......|..|..||+ +..|++...+|.|.+|++..
T Consensus 225 ~~~~~d~i~kmSlSPd-g~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 225 QGQEQDGIFKMSLSPD-GSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred cccCCCceEEEEECCC-CCEEEEEEcCCeEEEEecCc
Confidence 2334567999999999 89999999999999999864
No 298
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=6.9e-09 Score=82.08 Aligned_cols=246 Identities=13% Similarity=0.075 Sum_probs=144.0
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD 137 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 137 (317)
.+...|..++|+|..+.++..++.+..|+|.|+++. .....+..+ ..+++++|.-+..+++++|..+|.|.+||++
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~---~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS---CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccc---eeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 466789999999987668999999999999999875 555566666 8899999999988899999999999999998
Q ss_pred CCcee-EEeec--cccceEEEEEecCC-----CCeEEEEeCCCeEEEEeCCCC--Cceeeec-cCccceEEEEecCCCCc
Q 021121 138 RPTSV-RTFKE--HAYCVYNATWNPRH-----SDVFCSASGDCTLRIWDVREM--GSTMIIP-AHEFEILACDWNKYDDC 206 (317)
Q Consensus 138 ~~~~~-~~~~~--~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~--~~~~~~~-~~~~~v~~i~~~~~~~~ 206 (317)
..+.. ..+.+ ...+|..++.-+.+ +.+++....+ +..|+.... .....++ ...+...++.+++....
T Consensus 267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh 344 (463)
T KOG1645|consen 267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNH 344 (463)
T ss_pred CCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccce
Confidence 76432 12211 22344444433221 3334333332 445554321 1222222 23455667777773444
Q ss_pred EEEEEecCC------cEEE-EEccCCCccEEEEecC-CC------ceeEEEecCCCCeeEEeeecCCeEEEEecccccce
Q 021121 207 LIASASVDK------SIKI-WDVRNYRVPIAVLNGH-GY------AVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL 272 (317)
Q Consensus 207 ~l~~~~~d~------~i~v-~d~~~~~~~~~~~~~~-~~------~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~ 272 (317)
.+++.-.+. .|-. -|.+.+.........+ +. .-..+.-.++...++..++..+.+.+||..+.+ +
T Consensus 345 ~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~e-v 423 (463)
T KOG1645|consen 345 LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFE-V 423 (463)
T ss_pred EEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhh-e
Confidence 444433211 0111 1111111100111111 00 001122234555456667677889999999886 5
Q ss_pred eeeeecccceeEeEEEEeccCC-eEEEeecCCcEEEEecCC
Q 021121 273 VGRYDHHTEFAVGVDMSVLVEG-LLASTGWDELVYVWQQGM 312 (317)
Q Consensus 273 ~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~i~~w~~~~ 312 (317)
++.+.- ..+|.+++....++. +|++- .|..++||..+.
T Consensus 424 vQ~l~~-~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~es 462 (463)
T KOG1645|consen 424 VQTLAL-SEPVLDICPNDTNGSSYLALL-TDDRVHIYKNES 462 (463)
T ss_pred eeeccc-CcceeecceeecCCcchhhhe-ecceEEEEecCC
Confidence 556554 378888876654333 55555 466789988654
No 299
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.14 E-value=2.6e-09 Score=92.70 Aligned_cols=184 Identities=17% Similarity=0.146 Sum_probs=140.5
Q ss_pred CEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEE
Q 021121 120 DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACD 199 (317)
Q Consensus 120 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~ 199 (317)
..++.|+....+..+|+++.+..+...-..+.+.-++.+ ++.+.+|...|+|.+-|.++.+.+.++..|.+.+..+.
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N---nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN---NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEEEec---CcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 367777777888899999888777766555456666654 77898999999999999999999999999999988776
Q ss_pred ecCCCCcEEEEEec---------CCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121 200 WNKYDDCLIASASV---------DKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED 270 (317)
Q Consensus 200 ~~~~~~~~l~~~~~---------d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~ 270 (317)
. .|++|++++. |..|+|||+|+.+. +.-+.-+.++ .-+.|+|.-...++.++..|...+-|..+..
T Consensus 225 v---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra-l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 225 V---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA-LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred c---cCCeEEEeecccccccccccchhhhhhhhhhhc-cCCcccccCc-hhhhhcccccceEEEEecccceeeccccccC
Confidence 5 6788888875 45689999998764 3333323322 5578888776678889999999999943322
Q ss_pred ---ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121 271 ---ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 271 ---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
.-+.........+.++++++. ++.++-|..+|.|.+|.-..
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn-~~alafgd~~g~v~~wa~~~ 343 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSN-GDALAFGDHEGHVNLWADRP 343 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCC-CceEEEecccCcEeeecCCC
Confidence 222333344556999999998 89999999999999998433
No 300
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.13 E-value=1.2e-07 Score=77.02 Aligned_cols=203 Identities=14% Similarity=0.119 Sum_probs=139.6
Q ss_pred CceEEEEecCCCCCcceeee-eec----C---CCCeeEEE-ecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCC
Q 021121 36 NGRVHVLDLSPAAPALTELV-AFD----T---ADGVYDLA-WSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHT 106 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~~-~~~----~---~~~v~~~~-~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~ 106 (317)
.|.|++||-.+.......+. ... . ..+..-+. |++-...+++..+. |...+.+...+ ..+ --+|.
T Consensus 286 ~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~---~~i--qv~~~ 359 (668)
T COG4946 286 AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG---YSI--QVGKK 359 (668)
T ss_pred CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC---eeE--EcCCC
Confidence 57899999876652111111 000 0 11112222 44433357777764 66777765432 222 23567
Q ss_pred cceEEEEEecCCCCEEEEEcCCC-EEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCce
Q 021121 107 REVHSADYNPTRRDSFITSSWDD-TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST 185 (317)
Q Consensus 107 ~~v~~~~~~~~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 185 (317)
+.|.-..+..+.. -++.|..|| .+-++|.++++.. .+...-+.|.++..+|+ ++.++++.....+.+.|+.+++..
T Consensus 360 ~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~d-GK~~vvaNdr~el~vididngnv~ 436 (668)
T COG4946 360 GGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPD-GKKVVVANDRFELWVIDIDNGNVR 436 (668)
T ss_pred CceEEEEEccCCc-ceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCC-CcEEEEEcCceEEEEEEecCCCee
Confidence 7788888887777 788999999 8999999877654 44556778999999999 898989999999999999999877
Q ss_pred eeeccCccceEEEEecCCCCcEEEEEecCC----cEEEEEccCCCccEEEEecCCCceeEEEecCCCCe
Q 021121 186 MIIPAHEFEILACDWNKYDDCLIASASVDK----SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRN 250 (317)
Q Consensus 186 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~----~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 250 (317)
..-+....-|+.++|+| +++++|-+--+| .|++||+...+. .......+.=.+-+|.|++++
T Consensus 437 ~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Ki--y~vTT~ta~DfsPaFD~d~ry 502 (668)
T COG4946 437 LIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKI--YDVTTPTAYDFSPAFDPDGRY 502 (668)
T ss_pred EecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeE--EEecCCcccccCcccCCCCcE
Confidence 66666677899999999 999999876554 699999988653 333222333345677888774
No 301
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=4.4e-08 Score=80.82 Aligned_cols=235 Identities=17% Similarity=0.279 Sum_probs=146.5
Q ss_pred eeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcC-----------CCEE
Q 021121 63 VYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW-----------DDTV 131 (317)
Q Consensus 63 v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~v 131 (317)
=+-+.|||.| .+|++-...| |.+|--.. ...+..+. | ..|.-+.|||..+ +|++=+. ...+
T Consensus 213 etyv~wSP~G-TYL~t~Hk~G-I~lWGG~~---f~r~~RF~-H-p~Vq~idfSP~Ek-YLVT~s~~p~~~~~~d~e~~~l 284 (698)
T KOG2314|consen 213 ETYVRWSPKG-TYLVTFHKQG-IALWGGES---FDRIQRFY-H-PGVQFIDFSPNEK-YLVTYSPEPIIVEEDDNEGQQL 284 (698)
T ss_pred eeeEEecCCc-eEEEEEeccc-eeeecCcc---HHHHHhcc-C-CCceeeecCCccc-eEEEecCCccccCcccCCCceE
Confidence 4678999998 6999998887 89997432 23333332 3 3578899999988 8887643 2579
Q ss_pred EEEEcCCCceeEEeecc--ccce-EEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEE
Q 021121 132 KLWTVDRPTSVRTFKEH--AYCV-YNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLI 208 (317)
Q Consensus 132 ~iwd~~~~~~~~~~~~~--~~~v-~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 208 (317)
+|||+.+|...+.+... ...+ .-+.|+.+ .+++|--.. ..|.||+..+..++-.-.-.-..|....|+| .+++|
T Consensus 285 ~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~D-dKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~ll 361 (698)
T KOG2314|consen 285 IIWDIATGLLKRSFPVIKSPYLKWPIFRWSHD-DKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLL 361 (698)
T ss_pred EEEEccccchhcceeccCCCccccceEEeccC-CceeEEecc-ceEEEEecCceeeecccccCCccccCcccCC-CcceE
Confidence 99999999988888752 2223 33579988 788876655 5688888765332221111223455555555 44444
Q ss_pred EEEecC---------------------------------------------------------CcEEEEEccCCCccEEE
Q 021121 209 ASASVD---------------------------------------------------------KSIKIWDVRNYRVPIAV 231 (317)
Q Consensus 209 ~~~~~d---------------------------------------------------------~~i~v~d~~~~~~~~~~ 231 (317)
|.-... ..+.|+.++....++..
T Consensus 362 AYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ 441 (698)
T KOG2314|consen 362 AYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV 441 (698)
T ss_pred EEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence 432110 11233333333333333
Q ss_pred EecCCCceeEEEecCCCCeeEEeeecC--CeEEEEecccc-c--ceeeeeecccceeEeEEEEeccCCeEEEee---cCC
Q 021121 232 LNGHGYAVRKVKFSPHRRNLLASCSYD--MTVCLWDFMVE-D--ALVGRYDHHTEFAVGVDMSVLVEGLLASTG---WDE 303 (317)
Q Consensus 232 ~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~vwd~~~~-~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~dg 303 (317)
.. -...|...+|-|.|..+.+..+.+ .++.+|.+++. . .++..+.. ...+.+.|+|. |++++.+. ..|
T Consensus 442 ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPk-G~fvvva~l~s~~g 517 (698)
T KOG2314|consen 442 VE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPK-GRFVVVAALVSRRG 517 (698)
T ss_pred ee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCC-CcEEEEEEeccccc
Confidence 22 245678889999998754444433 56888888742 2 23333333 45788999999 67665544 578
Q ss_pred cEEEEecCC
Q 021121 304 LVYVWQQGM 312 (317)
Q Consensus 304 ~i~~w~~~~ 312 (317)
.+.++|++.
T Consensus 518 ~l~F~D~~~ 526 (698)
T KOG2314|consen 518 DLEFYDTDY 526 (698)
T ss_pred ceEEEecch
Confidence 999999874
No 302
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.10 E-value=5.4e-07 Score=70.69 Aligned_cols=227 Identities=14% Similarity=0.150 Sum_probs=144.7
Q ss_pred CCeeEEEecCCCCCeEEEEEcCCe-EEEEEeCCCCCCCCceeeccCCcce--EEEEEecCCCCEEEEE-----cCCCEEE
Q 021121 61 DGVYDLAWSESHDSLLIAAVADGS-VKIYDTALPPTANPIRSLHEHTREV--HSADYNPTRRDSFITS-----SWDDTVK 132 (317)
Q Consensus 61 ~~v~~~~~~~~~~~~l~~~~~dg~-i~v~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~-----~~dg~v~ 132 (317)
.....++.+|.....++.+-.-|+ ..+||..++ .....+....+.- -.-.|+++|+ +|++. ...|.|-
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g---~~~~~~~a~~gRHFyGHg~fs~dG~-~LytTEnd~~~g~G~Ig 80 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTG---QLLQRLWAPPGRHFYGHGVFSPDGR-LLYTTENDYETGRGVIG 80 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCC---ceeeEEcCCCCCEEecCEEEcCCCC-EEEEeccccCCCcEEEE
Confidence 345567888866667777776664 667888766 3332222211111 1247999998 67665 3458999
Q ss_pred EEEcC-CCceeEEeeccccceEEEEEecCCCCeEEEEe------------------CCCeEEEEeCCCCCceee--e--c
Q 021121 133 LWTVD-RPTSVRTFKEHAYCVYNATWNPRHSDVFCSAS------------------GDCTLRIWDVREMGSTMI--I--P 189 (317)
Q Consensus 133 iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~--~--~ 189 (317)
|||.. +.+.+.++..+.-....+.+.|+ +..|+++. .+-.+...|.++++.+.+ + .
T Consensus 81 Vyd~~~~~~ri~E~~s~GIGPHel~l~pD-G~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~ 159 (305)
T PF07433_consen 81 VYDAARGYRRIGEFPSHGIGPHELLLMPD-GETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD 159 (305)
T ss_pred EEECcCCcEEEeEecCCCcChhhEEEcCC-CCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc
Confidence 99999 56777888877777888999999 55554432 123455667777776665 3 2
Q ss_pred cCccceEEEEecCCCCcEEEEEecCCc-------EEEEEccCCCccEEEE-------ecCCCceeEEEecCCCCeeEEee
Q 021121 190 AHEFEILACDWNKYDDCLIASASVDKS-------IKIWDVRNYRVPIAVL-------NGHGYAVRKVKFSPHRRNLLASC 255 (317)
Q Consensus 190 ~~~~~v~~i~~~~~~~~~l~~~~~d~~-------i~v~d~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~ 255 (317)
.|...+..+++.+ ++..++..-..|. +.+++.... +..+ ..-...+-+|++++++..+.+|+
T Consensus 160 ~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~~---~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ts 235 (305)
T PF07433_consen 160 LHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGGA---LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTS 235 (305)
T ss_pred ccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCCc---ceeccCChHHHHhhCCceEEEEEeCCCCEEEEEC
Confidence 3667899999998 7766665544332 334433221 2221 12345788999999998655666
Q ss_pred ecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeec
Q 021121 256 SYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGW 301 (317)
Q Consensus 256 ~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 301 (317)
-..+.+.+||..+++ ++....- ..+..++-.++ .+++|.+.
T Consensus 236 PrGg~~~~~d~~tg~-~~~~~~l--~D~cGva~~~~--~f~~ssG~ 276 (305)
T PF07433_consen 236 PRGGRVAVWDAATGR-LLGSVPL--PDACGVAPTDD--GFLVSSGQ 276 (305)
T ss_pred CCCCEEEEEECCCCC-Eeecccc--CceeeeeecCC--ceEEeCCC
Confidence 688899999999886 4333332 23556665554 36666654
No 303
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.5e-09 Score=85.69 Aligned_cols=247 Identities=14% Similarity=0.111 Sum_probs=169.5
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcC-CCEEEEEEc
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW-DDTVKLWTV 136 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~v~iwd~ 136 (317)
-|...|+.+.-... .++.+++.||.++.|.-..-...+.+..+..|...|.+++.+-++. ++.+.+. |..++++|+
T Consensus 7 mhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~-L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW-LFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cccceeeeEeeehh--heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce-eEeeccCcccceeEEEe
Confidence 46667777665543 5999999999999998554223355666778999999999999987 8888777 999999999
Q ss_pred CCCceeEEeeccccceEEEEEecCCC----CeEEEEeCCCeEEEEeCCCCCc--eeeeccCccceEEEEecCCCCcEEEE
Q 021121 137 DRPTSVRTFKEHAYCVYNATWNPRHS----DVFCSASGDCTLRIWDVREMGS--TMIIPAHEFEILACDWNKYDDCLIAS 210 (317)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~l~~ 210 (317)
++-..+..++. ......+.|....+ .+.++.-.+|.+.++|-....+ ...-.-|..+|.++.++| .+..+++
T Consensus 84 En~DminmiKL-~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~Ds~vS 161 (558)
T KOG0882|consen 84 ENFDMINMIKL-VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGDSAVS 161 (558)
T ss_pred eccchhhhccc-ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec-cccceee
Confidence 87655433331 11122233332213 2333445688999999876542 233346889999999999 8889999
Q ss_pred EecCCcEEEEEccC-CCccE-------------EEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceee--
Q 021121 211 ASVDKSIKIWDVRN-YRVPI-------------AVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVG-- 274 (317)
Q Consensus 211 ~~~d~~i~v~d~~~-~~~~~-------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~-- 274 (317)
....|.|.-|.... .+.+. ..+........++.|+|++. -+.+-+.|..|+++++.+++ +++
T Consensus 162 iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~-qistl~~DrkVR~F~~KtGk-lvqei 239 (558)
T KOG0882|consen 162 IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA-QISTLNPDRKVRGFVFKTGK-LVQEI 239 (558)
T ss_pred ccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC-cccccCcccEEEEEEeccch-hhhhh
Confidence 99999999998873 11111 11122345678999999999 58888899999999998875 111
Q ss_pred ------------------------------eeecccc-eeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121 275 ------------------------------RYDHHTE-FAVGVDMSVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 275 ------------------------------~~~~~~~-~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
.++.|.. .-+.+.|... +++|+-++-=| |++.++.++
T Consensus 240 DE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes-~~flly~t~~g-ikvin~~tn 307 (558)
T KOG0882|consen 240 DEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDES-GNFLLYGTILG-IKVINLDTN 307 (558)
T ss_pred hccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCC-CCEEEeeccee-EEEEEeecC
Confidence 1112222 2345677776 77888777666 777777654
No 304
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=6.8e-10 Score=85.98 Aligned_cols=146 Identities=16% Similarity=0.266 Sum_probs=110.8
Q ss_pred CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCC--CCceeeccCCcceEEEE
Q 021121 36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTA--NPIRSLHEHTREVHSAD 113 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~--~~~~~~~~~~~~v~~~~ 113 (317)
+-.|-+-++.++- ...+...+.|.++.|...+ +++..|..+|.|..+|++...+. .+... --|.+.|+++.
T Consensus 233 sqqv~L~nvetg~-----~qsf~sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~~a~r-lyh~Ssvtslq 305 (425)
T KOG2695|consen 233 SQQVLLTNVETGH-----QQSFQSKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGWCAQR-LYHDSSVTSLQ 305 (425)
T ss_pred cceeEEEEeeccc-----ccccccchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCcceEE-EEcCcchhhhh
Confidence 5678888887663 3344577889999999876 69999999999999999875322 22222 24899999998
Q ss_pred EecCCCCEEEEEcCCCEEEEEEcCCCce---eEEeeccccceEEE--EEecCCCCeEEEEeCCCeEEEEeCCCCCceeee
Q 021121 114 YNPTRRDSFITSSWDDTVKLWTVDRPTS---VRTFKEHAYCVYNA--TWNPRHSDVFCSASGDCTLRIWDVREMGSTMII 188 (317)
Q Consensus 114 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~v~~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 188 (317)
.......+|++.+.+|.|++||++..++ +..+.+|-..-.-+ ...+. ...+++++.|...++|.++.+..+.++
T Consensus 306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~e-eg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 306 ILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEE-EGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccc-cceEEEccCeeEEEEEecccCceeecc
Confidence 8773344899999999999999988777 77787775433322 23444 556778999999999999999888776
Q ss_pred c
Q 021121 189 P 189 (317)
Q Consensus 189 ~ 189 (317)
+
T Consensus 385 p 385 (425)
T KOG2695|consen 385 P 385 (425)
T ss_pred C
Confidence 5
No 305
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=2e-08 Score=86.29 Aligned_cols=185 Identities=15% Similarity=0.182 Sum_probs=131.6
Q ss_pred CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC
Q 021121 59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR 138 (317)
Q Consensus 59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 138 (317)
....+.|++++ ...++.|+.+|.|++++.... + .....|+.. ..+|. ++++|+.||.|.|-.+-+
T Consensus 38 ~~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~----~-~~~~~~s~~------~~~Ge-y~asCS~DGkv~I~sl~~ 102 (846)
T KOG2066|consen 38 QNDAISCCAVH---DKFFALGTHRGAVYLTTCQGN----P-KTNFDHSSS------ILEGE-YVASCSDDGKVVIGSLFT 102 (846)
T ss_pred hhhHHHHHHhh---cceeeeccccceEEEEecCCc----c-ccccccccc------ccCCc-eEEEecCCCcEEEeeccC
Confidence 34567788887 258999999999999997632 2 333345444 55677 999999999999999988
Q ss_pred CceeEEeeccccceEEEEEecC----CCCeEEEEeCCCeEEEEeCCCC--CceeeeccCccceEEEEecCCCCcEEEEEe
Q 021121 139 PTSVRTFKEHAYCVYNATWNPR----HSDVFCSASGDCTLRIWDVREM--GSTMIIPAHEFEILACDWNKYDDCLIASAS 212 (317)
Q Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~ 212 (317)
.+...++. ...++.+++++|+ ..+.+++|+..| +.++.-+=. +....+....++|.++.|. ++++|-++
T Consensus 103 ~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~---g~lIAWan 177 (846)
T KOG2066|consen 103 DDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR---GNLIAWAN 177 (846)
T ss_pred CccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec---CcEEEEec
Confidence 88777665 5678999999997 456788999988 777653321 1112345567899999994 67888877
Q ss_pred cCCcEEEEEccCCCccEEEEecCCC------ceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121 213 VDKSIKIWDVRNYRVPIAVLNGHGY------AVRKVKFSPHRRNLLASCSYDMTVCLWDFMV 268 (317)
Q Consensus 213 ~d~~i~v~d~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~ 268 (317)
.+| |++||....+. +..+..... --..+.|.++.+ |+.| ...+|+|..++.
T Consensus 178 d~G-v~vyd~~~~~~-l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQR-LTNIPPPSQSVRPELFPPHLHWQDEDR--LVIG-WGDSVKICSIKK 234 (846)
T ss_pred CCC-cEEEeccccce-eeccCCCCCCCCcccCCCceEecCCCe--EEEe-cCCeEEEEEEec
Confidence 665 99999988654 443332212 234678887765 4444 556789988873
No 306
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=4.3e-10 Score=87.02 Aligned_cols=142 Identities=16% Similarity=0.182 Sum_probs=107.7
Q ss_pred EEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCC----CccEEEEecCCCceeE
Q 021121 166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNY----RVPIAVLNGHGYAVRK 241 (317)
Q Consensus 166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~~v~~ 241 (317)
++.+.+-.+-+-|+.++-. ..+. ..+.|.++.|.. .++++..|..+|.|..+|+|.. ..+...+ -|.+.|++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhh
Confidence 4566677788889887643 3333 567789999987 8999999999999999999975 2233333 48889999
Q ss_pred EEecC-CCCeeEEeeecCCeEEEEecccccc--eeeeeecccceeEeEEE--EeccCCeEEEeecCCcEEEEecCCC
Q 021121 242 VKFSP-HRRNLLASCSYDMTVCLWDFMVEDA--LVGRYDHHTEFAVGVDM--SVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 242 ~~~~~-~~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
+..-. +++ +|++.+.+|+|++||.+..+. -+..+.+|...-.-+-+ .+. +..++++|.|...|||.++..
T Consensus 304 lq~Lq~s~q-~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~e-eg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 304 LQILQFSQQ-KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEE-EGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred hhhhccccc-eEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccc-cceEEEccCeeEEEEEecccC
Confidence 98877 455 688888999999999987663 25678888654444433 343 558889999999999999854
No 307
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.09 E-value=5.1e-07 Score=76.17 Aligned_cols=249 Identities=10% Similarity=0.010 Sum_probs=141.1
Q ss_pred CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcce-----E
Q 021121 36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREV-----H 110 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v-----~ 110 (317)
+|.++-+|.++++...+.. ....+.+--.- .+ ..++.+..+|.+.-+|.+++ +.+.......... .
T Consensus 129 ~g~l~ald~~tG~~~W~~~----~~~~~~ssP~v-~~-~~v~v~~~~g~l~ald~~tG---~~~W~~~~~~~~~~~~~~~ 199 (394)
T PRK11138 129 KGQVYALNAEDGEVAWQTK----VAGEALSRPVV-SD-GLVLVHTSNGMLQALNESDG---AVKWTVNLDVPSLTLRGES 199 (394)
T ss_pred CCEEEEEECCCCCCccccc----CCCceecCCEE-EC-CEEEEECCCCEEEEEEccCC---CEeeeecCCCCcccccCCC
Confidence 7889999987766432221 11222111001 12 36667778899999998876 4433332211000 0
Q ss_pred EEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecccc-------ceEEEEEec--CCCCeEEEEeCCCeEEEEeCCC
Q 021121 111 SADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAY-------CVYNATWNP--RHSDVFCSASGDCTLRIWDVRE 181 (317)
Q Consensus 111 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~ 181 (317)
+-... +. .++.++.+|.+..+|.++++.+........ ....+.-+| . +..++.++.+|.+..+|..+
T Consensus 200 sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~-~~~vy~~~~~g~l~ald~~t 275 (394)
T PRK11138 200 APATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVV-GGVVYALAYNGNLVALDLRS 275 (394)
T ss_pred CCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEE-CCEEEEEEcCCeEEEEECCC
Confidence 11111 22 567778899999999999877655431110 001111111 1 34566778899999999999
Q ss_pred CCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec-CCCceeEEEecCCCCeeEEeeecCCe
Q 021121 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG-HGYAVRKVKFSPHRRNLLASCSYDMT 260 (317)
Q Consensus 182 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d~~ 260 (317)
++.+...... ....+.. .+..++.++.++.+..+|..+++. +..... ......+.... +. .|+.++.+|.
T Consensus 276 G~~~W~~~~~--~~~~~~~---~~~~vy~~~~~g~l~ald~~tG~~-~W~~~~~~~~~~~sp~v~--~g-~l~v~~~~G~ 346 (394)
T PRK11138 276 GQIVWKREYG--SVNDFAV---DGGRIYLVDQNDRVYALDTRGGVE-LWSQSDLLHRLLTAPVLY--NG-YLVVGDSEGY 346 (394)
T ss_pred CCEEEeecCC--CccCcEE---ECCEEEEEcCCCeEEEEECCCCcE-EEcccccCCCcccCCEEE--CC-EEEEEeCCCE
Confidence 8876554321 1112222 345666777899999999988764 222211 11112222222 33 4778899999
Q ss_pred EEEEecccccceeeeeecccceeE-eEEEEeccCCeEEEeecCCcEEEEec
Q 021121 261 VCLWDFMVEDALVGRYDHHTEFAV-GVDMSVLVEGLLASTGWDELVYVWQQ 310 (317)
Q Consensus 261 i~vwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~dg~i~~w~~ 310 (317)
+.+.|..+++ .+....-....+. ...+. +..|+.++.||.|+.+++
T Consensus 347 l~~ld~~tG~-~~~~~~~~~~~~~s~P~~~---~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 347 LHWINREDGR-FVAQQKVDSSGFLSEPVVA---DDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEECCCCC-EEEEEEcCCCcceeCCEEE---CCEEEEEeCCceEEEEeC
Confidence 9999999987 3334332222222 22222 457888899999988765
No 308
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.07 E-value=9.2e-11 Score=97.76 Aligned_cols=205 Identities=19% Similarity=0.302 Sum_probs=144.7
Q ss_pred CCCCeeEEEecCCCC-CeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEc----CCCEEEE
Q 021121 59 TADGVYDLAWSESHD-SLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSS----WDDTVKL 133 (317)
Q Consensus 59 ~~~~v~~~~~~~~~~-~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~v~i 133 (317)
....+.|+++.-+.+ -++++|..+|.|.+-.+..+... ......++....++++|++-..+.|++|- .|..+.|
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-cceecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence 445678888775543 58899999999999988765322 22344578889999999987665677763 3578999
Q ss_pred EEcCCC--ce--eEEeec-cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc-eeeeccCccceEEEEecCCCCcE
Q 021121 134 WTVDRP--TS--VRTFKE-HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS-TMIIPAHEFEILACDWNKYDDCL 207 (317)
Q Consensus 134 wd~~~~--~~--~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~ 207 (317)
||+.++ .+ ...+.. ......+++|..+ .+++.+|.....+.++|+|.... ...+ ....+..+..+|..+++
T Consensus 134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY 210 (783)
T KOG1008|consen 134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNY 210 (783)
T ss_pred eecccccCCCccccccccccccCccccccccC-cchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCc
Confidence 999876 11 112222 3344668899966 88888999999999999984322 2222 23456678888888888
Q ss_pred EEEEecCCcEEEEE-ccCCCccEEEEecCC----CceeEEEecCCCCeeEEeeecC-CeEEEEeccc
Q 021121 208 IASASVDKSIKIWD-VRNYRVPIAVLNGHG----YAVRKVKFSPHRRNLLASCSYD-MTVCLWDFMV 268 (317)
Q Consensus 208 l~~~~~d~~i~v~d-~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~~d-~~i~vwd~~~ 268 (317)
+++-. ||.|.+|| .++.+.++..+.... ..+..++|.|....++++...| ++|+++|+..
T Consensus 211 ~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 211 FCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred eeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 88765 99999999 666555554433222 2488999999877677777755 6799998764
No 309
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.06 E-value=1.5e-07 Score=73.62 Aligned_cols=215 Identities=13% Similarity=0.015 Sum_probs=127.8
Q ss_pred CCeEEEEEeCCCCCCCCceeeccC--CcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEec
Q 021121 82 DGSVKIYDTALPPTANPIRSLHEH--TREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP 159 (317)
Q Consensus 82 dg~i~v~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 159 (317)
+|.|..||..++ +.+...... .....+... +++. .+++++.++.|..||..+++.+...... .++..... .
T Consensus 2 ~g~l~~~d~~tG---~~~W~~~~~~~~~~~~~~~~-~~~~-~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~~-~ 74 (238)
T PF13360_consen 2 DGTLSALDPRTG---KELWSYDLGPGIGGPVATAV-PDGG-RVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAPV-V 74 (238)
T ss_dssp TSEEEEEETTTT---EEEEEEECSSSCSSEEETEE-EETT-EEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGEE-E
T ss_pred CCEEEEEECCCC---CEEEEEECCCCCCCccceEE-EeCC-EEEEEcCCCEEEEEECCCCCEEEEeecc-ccccceee-e
Confidence 577888887655 444433221 112221122 2344 6778789999999999999988777642 21111111 1
Q ss_pred CCCCeEEEEeCCCeEEEEeCCCCCceeee-ccCcc---ceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecC
Q 021121 160 RHSDVFCSASGDCTLRIWDVREMGSTMII-PAHEF---EILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH 235 (317)
Q Consensus 160 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~---~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 235 (317)
. +..+++++.++.++.+|.++++.+... ..... ......... .+..++++..++.|..+|.++++. +......
T Consensus 75 ~-~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~-~w~~~~~ 151 (238)
T PF13360_consen 75 D-GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKL-LWKYPVG 151 (238)
T ss_dssp E-TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTEE-EEEEESS
T ss_pred c-ccccccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCcE-EEEeecC
Confidence 2 556667778889999999999988774 32211 111222222 366778888899999999999875 4444433
Q ss_pred CCc----------e-eEEEecCCCCeeEEeeecCCe-EEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCC
Q 021121 236 GYA----------V-RKVKFSPHRRNLLASCSYDMT-VCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDE 303 (317)
Q Consensus 236 ~~~----------v-~~~~~~~~~~~~l~~~~~d~~-i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 303 (317)
... + ..+.+. ++ . ++.++.++. +.+ |+.+++... ... ...+..+ .... +..|+.++.++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~-~~-~-v~~~~~~g~~~~~-d~~tg~~~w-~~~--~~~~~~~-~~~~-~~~l~~~~~~~ 222 (238)
T PF13360_consen 152 EPRGSSPISSFSDINGSPVIS-DG-R-VYVSSGDGRVVAV-DLATGEKLW-SKP--ISGIYSL-PSVD-GGTLYVTSSDG 222 (238)
T ss_dssp TT-SS--EEEETTEEEEEECC-TT-E-EEEECCTSSEEEE-ETTTTEEEE-EEC--SS-ECEC-EECC-CTEEEEEETTT
T ss_pred CCCCCcceeeecccccceEEE-CC-E-EEEEcCCCeEEEE-ECCCCCEEE-Eec--CCCccCC-ceee-CCEEEEEeCCC
Confidence 211 1 233333 34 3 555555664 666 999987443 222 2223321 3344 56777777999
Q ss_pred cEEEEecCCCCC
Q 021121 304 LVYVWQQGMDPR 315 (317)
Q Consensus 304 ~i~~w~~~~~~~ 315 (317)
.|..||+.+.+.
T Consensus 223 ~l~~~d~~tG~~ 234 (238)
T PF13360_consen 223 RLYALDLKTGKV 234 (238)
T ss_dssp EEEEEETTTTEE
T ss_pred EEEEEECCCCCE
Confidence 999999988653
No 310
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.2e-08 Score=80.78 Aligned_cols=224 Identities=8% Similarity=0.067 Sum_probs=136.1
Q ss_pred EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCe
Q 021121 85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDV 164 (317)
Q Consensus 85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 164 (317)
+++.+..+. +....+..+...|..++|+|....++..++.+..|+|.|+++......+..+ ..+++++|.-++.+.
T Consensus 175 v~~l~~~~f---kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 175 VQKLESHDF---KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHV 250 (463)
T ss_pred eEEeccCCc---chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcce
Confidence 444443332 4444667788899999999988768899999999999999999888888877 779999999998999
Q ss_pred EEEEeCCCeEEEEeCCCCCcee-eecc--CccceEEEEecCC-----CCcEEEEEecCCcEEEEEccCCC--ccEEEEec
Q 021121 165 FCSASGDCTLRIWDVREMGSTM-IIPA--HEFEILACDWNKY-----DDCLIASASVDKSIKIWDVRNYR--VPIAVLNG 234 (317)
Q Consensus 165 l~~~~~dg~i~i~d~~~~~~~~-~~~~--~~~~v~~i~~~~~-----~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~ 234 (317)
++.|...|.|.+||++..+... .+.+ ...+|..++.-+. .+.+++....+ +..|++.... .+.....+
T Consensus 251 IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele 328 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE 328 (463)
T ss_pred eEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC
Confidence 9999999999999999764332 2221 2334544443321 23344444332 4556554322 11222223
Q ss_pred CCCceeEEEecCCCCeeEEeeecCCe------EEE-Eecccccceeeeeecc-cce------eEeEEEEeccCCeEEEee
Q 021121 235 HGYAVRKVKFSPHRRNLLASCSYDMT------VCL-WDFMVEDALVGRYDHH-TEF------AVGVDMSVLVEGLLASTG 300 (317)
Q Consensus 235 ~~~~v~~~~~~~~~~~~l~~~~~d~~------i~v-wd~~~~~~~~~~~~~~-~~~------v~~~~~~~~~~~~l~s~~ 300 (317)
..+...++++.+..+++|++.-.+.+ |-. -|..++..+......+ .+. -..+.-.+++.-++..++
T Consensus 329 ~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd 408 (463)
T KOG1645|consen 329 PPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGD 408 (463)
T ss_pred CCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecC
Confidence 45567778888766767776654211 111 1111222222221222 100 011222333223455666
Q ss_pred cCCcEEEEecCCCC
Q 021121 301 WDELVYVWQQGMDP 314 (317)
Q Consensus 301 ~dg~i~~w~~~~~~ 314 (317)
..+.+.+||.....
T Consensus 409 ~tn~lil~D~~s~e 422 (463)
T KOG1645|consen 409 STNELILQDPHSFE 422 (463)
T ss_pred CcceeEEeccchhh
Confidence 78899999987654
No 311
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.99 E-value=1e-06 Score=68.98 Aligned_cols=219 Identities=12% Similarity=0.004 Sum_probs=127.5
Q ss_pred CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEe
Q 021121 36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN 115 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 115 (317)
+|.|..||..+++..... ..........+... +++ ..+++++.++.+..||..++ +.+..... ..++......
T Consensus 2 ~g~l~~~d~~tG~~~W~~-~~~~~~~~~~~~~~-~~~-~~v~~~~~~~~l~~~d~~tG---~~~W~~~~-~~~~~~~~~~ 74 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSY-DLGPGIGGPVATAV-PDG-GRVYVASGDGNLYALDAKTG---KVLWRFDL-PGPISGAPVV 74 (238)
T ss_dssp TSEEEEEETTTTEEEEEE-ECSSSCSSEEETEE-EET-TEEEEEETTSEEEEEETTTS---EEEEEEEC-SSCGGSGEEE
T ss_pred CCEEEEEECCCCCEEEEE-ECCCCCCCccceEE-EeC-CEEEEEcCCCEEEEEECCCC---CEEEEeec-cccccceeee
Confidence 678888888766522211 11001122222222 233 46777789999999998776 44444432 1111111122
Q ss_pred cCCCCEEEEEcCCCEEEEEEcCCCceeEEe-eccc---cceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccC
Q 021121 116 PTRRDSFITSSWDDTVKLWTVDRPTSVRTF-KEHA---YCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAH 191 (317)
Q Consensus 116 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 191 (317)
. +. .++.++.++.+..+|..+++.+... .... ........... +..++++..++.|..+|+++++.+......
T Consensus 75 ~-~~-~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~ 151 (238)
T PF13360_consen 75 D-GG-RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVG 151 (238)
T ss_dssp E-TT-EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred c-cc-ccccccceeeeEecccCCcceeeeeccccccccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence 2 33 5677778889999999999998874 3221 11122222223 667788888999999999999887776543
Q ss_pred ccc----------e-EEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCe
Q 021121 192 EFE----------I-LACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMT 260 (317)
Q Consensus 192 ~~~----------v-~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 260 (317)
... + ..+.+. ++ .+..++.++.+..+|+.+++. +.... ...+..+ ..+.+. .|+.++.++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~d~~tg~~-~w~~~--~~~~~~~-~~~~~~-~l~~~~~~~~ 223 (238)
T PF13360_consen 152 EPRGSSPISSFSDINGSPVIS--DG-RVYVSSGDGRVVAVDLATGEK-LWSKP--ISGIYSL-PSVDGG-TLYVTSSDGR 223 (238)
T ss_dssp TT-SS--EEEETTEEEEEECC--TT-EEEEECCTSSEEEEETTTTEE-EEEEC--SS-ECEC-EECCCT-EEEEEETTTE
T ss_pred CCCCCcceeeecccccceEEE--CC-EEEEEcCCCeEEEEECCCCCE-EEEec--CCCccCC-ceeeCC-EEEEEeCCCE
Confidence 322 1 223333 34 566666677544449998774 33322 2233332 334565 4666668999
Q ss_pred EEEEecccccce
Q 021121 261 VCLWDFMVEDAL 272 (317)
Q Consensus 261 i~vwd~~~~~~~ 272 (317)
+..||+++++..
T Consensus 224 l~~~d~~tG~~~ 235 (238)
T PF13360_consen 224 LYALDLKTGKVV 235 (238)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCCEE
Confidence 999999998743
No 312
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=2.8e-07 Score=80.04 Aligned_cols=211 Identities=11% Similarity=0.132 Sum_probs=138.3
Q ss_pred CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCC-----EEEEEEc
Q 021121 62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD-----TVKLWTV 136 (317)
Q Consensus 62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~v~iwd~ 136 (317)
.+.| |++.+ ..++.|+.+|.|.+++-. .+.+..++.+...+...-+.-++.++|++.+.|+ .+++|++
T Consensus 27 ~isc--~~s~~-~~vvigt~~G~V~~Ln~s----~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~l 99 (933)
T KOG2114|consen 27 AISC--CSSST-GSVVIGTADGRVVILNSS----FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDL 99 (933)
T ss_pred ceeE--EcCCC-ceEEEeeccccEEEeccc----ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecc
Confidence 4443 56666 599999999999888833 3444667777776444445545544788776664 5899998
Q ss_pred CCC------cee---EEee----ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCC---C-CCceeeeccCccceEEEE
Q 021121 137 DRP------TSV---RTFK----EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR---E-MGSTMIIPAHEFEILACD 199 (317)
Q Consensus 137 ~~~------~~~---~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~---~-~~~~~~~~~~~~~v~~i~ 199 (317)
+.. +++ +.+. ....++.+++.+.+ -+.+++|-.+|.|..+.-. . +...........+|+.++
T Consensus 100 ek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~ 178 (933)
T KOG2114|consen 100 EKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLA 178 (933)
T ss_pred cccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeE
Confidence 643 233 1111 13567889999988 8899999999999988532 1 111222234567899999
Q ss_pred ecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecc
Q 021121 200 WNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH 279 (317)
Q Consensus 200 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 279 (317)
+.. ++..++-...-..|.+|.+.........+..|+..+.|-.+++.... +++++ +..+.+|+....+.+...-.+|
T Consensus 179 ~~~-d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~q-fIca~-~e~l~fY~sd~~~~cfaf~~g~ 255 (933)
T KOG2114|consen 179 LRS-DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQ-FICAG-SEFLYFYDSDGRGPCFAFEVGE 255 (933)
T ss_pred Eec-CCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCcc-EEEec-CceEEEEcCCCcceeeeecCCC
Confidence 987 66552222234579999998544234457888889999999987654 44444 3469999988666443333266
Q ss_pred ccee
Q 021121 280 TEFA 283 (317)
Q Consensus 280 ~~~v 283 (317)
....
T Consensus 256 kk~~ 259 (933)
T KOG2114|consen 256 KKEM 259 (933)
T ss_pred eEEE
Confidence 6543
No 313
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.98 E-value=1.1e-06 Score=79.26 Aligned_cols=240 Identities=13% Similarity=0.145 Sum_probs=148.0
Q ss_pred CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC-
Q 021121 59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD- 137 (317)
Q Consensus 59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~- 137 (317)
....|.++.|..+. +.++.+...|.|.+-|..+. .......-...|.+++|+||+. .++..+..+++.+-+-.
T Consensus 67 gd~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~----~~eivg~vd~GI~aaswS~Dee-~l~liT~~~tll~mT~~f 140 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADT-NSICVITALGDIILVDPETL----ELEIVGNVDNGISAASWSPDEE-LLALITGRQTLLFMTKDF 140 (1265)
T ss_pred CCcceEEEEEeccc-ceEEEEecCCcEEEEccccc----ceeeeeeccCceEEEeecCCCc-EEEEEeCCcEEEEEeccc
Confidence 34579999999887 57888888999999886653 3333334567899999999998 78877777777765421
Q ss_pred ---CC-------------------ceeEEeecc---------------------ccceEEEEEecCCCCeEEEE-----e
Q 021121 138 ---RP-------------------TSVRTFKEH---------------------AYCVYNATWNPRHSDVFCSA-----S 169 (317)
Q Consensus 138 ---~~-------------------~~~~~~~~~---------------------~~~v~~~~~~~~~~~~l~~~-----~ 169 (317)
.. +....+++. .+.=+++.|--+ +.++++. .
T Consensus 141 ~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgD-g~~fAVs~~~~~~ 219 (1265)
T KOG1920|consen 141 EPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGD-GEYFAVSFVESET 219 (1265)
T ss_pred cchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccC-CcEEEEEEEeccC
Confidence 00 111112111 111245889888 8888873 3
Q ss_pred CCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEe---cCCcEEEEEccCCCccEE--EEecCCCceeEEEe
Q 021121 170 GDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASAS---VDKSIKIWDVRNYRVPIA--VLNGHGYAVRKVKF 244 (317)
Q Consensus 170 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~---~d~~i~v~d~~~~~~~~~--~~~~~~~~v~~~~~ 244 (317)
....|++||-+ +..-..-.....--.+++|-| .|..+++-. .|+.|.+|.-+..+.--. .+......+..++|
T Consensus 220 ~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~W 297 (1265)
T KOG1920|consen 220 GTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAW 297 (1265)
T ss_pred CceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeee
Confidence 33789999976 433333333334456899999 898888764 355798998654332111 12223344899999
Q ss_pred cCCCCeeEEe---eecCCeEEEEeccccccee-eeeecccceeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121 245 SPHRRNLLAS---CSYDMTVCLWDFMVEDALV-GRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ 310 (317)
Q Consensus 245 ~~~~~~~l~~---~~~d~~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~ 310 (317)
+.++. +|++ ......|++|-+.+-.-.+ +.+.-..... +.|+|.....|..-..+|...++++
T Consensus 298 ns~sd-iLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 298 NSNSD-ILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred cCCCC-ceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 99998 7776 4455559999887654111 1111111111 6677654444444445565555544
No 314
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.94 E-value=4.5e-06 Score=70.53 Aligned_cols=220 Identities=7% Similarity=-0.046 Sum_probs=128.2
Q ss_pred eEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEE-EEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccce-
Q 021121 75 LLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHS-ADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCV- 152 (317)
Q Consensus 75 ~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v- 152 (317)
.++.++.+|.+.-+|.+++ +.+....... .+.+ .... + . .++.+..+|.+..+|.++++.+..........
T Consensus 122 ~v~v~~~~g~l~ald~~tG---~~~W~~~~~~-~~~ssP~v~-~-~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~ 194 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDG---EVAWQTKVAG-EALSRPVVS-D-G-LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLT 194 (394)
T ss_pred EEEEEcCCCEEEEEECCCC---CCcccccCCC-ceecCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeecCCCCccc
Confidence 6777888999999998877 4444333221 2221 1122 2 3 67778889999999999999887765321100
Q ss_pred ----EEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCcc-------ceEEEEecC-CCCcEEEEEecCCcEEEE
Q 021121 153 ----YNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEF-------EILACDWNK-YDDCLIASASVDKSIKIW 220 (317)
Q Consensus 153 ----~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~v~~i~~~~-~~~~~l~~~~~d~~i~v~ 220 (317)
.+-... ...++.++.+|.+..+|..+++.+........ ....+..+| ..+..++.++.++.+..+
T Consensus 195 ~~~~~sP~v~---~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~al 271 (394)
T PRK11138 195 LRGESAPATA---FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVAL 271 (394)
T ss_pred ccCCCCCEEE---CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEE
Confidence 011111 23466778899999999998876655431110 011111122 023456667788999999
Q ss_pred EccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEee
Q 021121 221 DVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTG 300 (317)
Q Consensus 221 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 300 (317)
|..+++. +..... . ....+.. .+. .++.++.+|.+..+|..+++.+............+.... +..|+.++
T Consensus 272 d~~tG~~-~W~~~~-~-~~~~~~~--~~~-~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~---~g~l~v~~ 342 (394)
T PRK11138 272 DLRSGQI-VWKREY-G-SVNDFAV--DGG-RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY---NGYLVVGD 342 (394)
T ss_pred ECCCCCE-EEeecC-C-CccCcEE--ECC-EEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE---CCEEEEEe
Confidence 9998764 322221 1 1112222 344 466677899999999988874332211111112222222 45777888
Q ss_pred cCCcEEEEecCCC
Q 021121 301 WDELVYVWQQGMD 313 (317)
Q Consensus 301 ~dg~i~~w~~~~~ 313 (317)
.||.|+..|..+.
T Consensus 343 ~~G~l~~ld~~tG 355 (394)
T PRK11138 343 SEGYLHWINREDG 355 (394)
T ss_pred CCCEEEEEECCCC
Confidence 8898888887654
No 315
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.94 E-value=1.5e-06 Score=78.47 Aligned_cols=241 Identities=14% Similarity=0.221 Sum_probs=144.1
Q ss_pred cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEE
Q 021121 8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKI 87 (317)
Q Consensus 8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 87 (317)
+.|.++.|.-+ .+.++++.. .|.|.+-|..... ..... ....+|.+++|+||. ..++..+..+++.+
T Consensus 69 ~~i~s~~fl~d-~~~i~v~~~-------~G~iilvd~et~~--~eivg--~vd~GI~aaswS~De-e~l~liT~~~tll~ 135 (1265)
T KOG1920|consen 69 DEIVSVQFLAD-TNSICVITA-------LGDIILVDPETLE--LEIVG--NVDNGISAASWSPDE-ELLALITGRQTLLF 135 (1265)
T ss_pred cceEEEEEecc-cceEEEEec-------CCcEEEEcccccc--eeeee--eccCceEEEeecCCC-cEEEEEeCCcEEEE
Confidence 47788888875 556666665 7788888766543 22222 456789999999997 48888877777666
Q ss_pred EEeCC----C--------CCC--------CCceeecc---------------------CCcceEEEEEecCCCCEEEEE-
Q 021121 88 YDTAL----P--------PTA--------NPIRSLHE---------------------HTREVHSADYNPTRRDSFITS- 125 (317)
Q Consensus 88 ~~~~~----~--------~~~--------~~~~~~~~---------------------~~~~v~~~~~~~~~~~~l~~~- 125 (317)
-.-.- . ... +....+.+ ....=+.+.|.-||. ++++.
T Consensus 136 mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~-~fAVs~ 214 (1265)
T KOG1920|consen 136 MTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGE-YFAVSF 214 (1265)
T ss_pred EeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCc-EEEEEE
Confidence 43210 0 000 00011111 011123589999998 77763
Q ss_pred ----cCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEE---eCCCeEEEEeCCCC---CceeeeccCccce
Q 021121 126 ----SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSA---SGDCTLRIWDVREM---GSTMIIPAHEFEI 195 (317)
Q Consensus 126 ----~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~---~~~~~~~~~~~~v 195 (317)
.....|++||-+ +..-..-....+.=.+++|-|. +..+++- +.|+.|.+|.-+.. +....++....++
T Consensus 215 ~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPs-gs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~v 292 (1265)
T KOG1920|consen 215 VESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPS-GSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEV 292 (1265)
T ss_pred EeccCCceeEEEeccc-chhhcccCcccccccceeecCC-CCeEeeeeecCCCCcEEEEecCCccccccccCCcccccch
Confidence 333789999977 4443333334445578999998 7777764 34567889885432 2222334444558
Q ss_pred EEEEecCCCCcEEEE---EecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEec
Q 021121 196 LACDWNKYDDCLIAS---ASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266 (317)
Q Consensus 196 ~~i~~~~~~~~~l~~---~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~ 266 (317)
..++|+. ++..|++ ......|++|-+.+..-.++......... -+.|+|...+-|..-..+|...++++
T Consensus 293 e~L~Wns-~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~-~~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 293 EELAWNS-NSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKA-LLMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred heeeecC-CCCceeeeecccccceEEEEEecCeEEEEEEEEeccccc-cccccCCCceeEEEEecCCcEEEEEE
Confidence 9999998 8888888 55555699999887543222211111111 17777755443443335565555543
No 316
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.93 E-value=1.5e-07 Score=78.65 Aligned_cols=139 Identities=16% Similarity=0.268 Sum_probs=98.9
Q ss_pred eEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEE----cCCe----EEEEEeCCCCCCCCce-eeccCCcc
Q 021121 38 RVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAV----ADGS----VKIYDTALPPTANPIR-SLHEHTRE 108 (317)
Q Consensus 38 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~----i~v~~~~~~~~~~~~~-~~~~~~~~ 108 (317)
++.++.+...+ ++.+..........++.|+...++.+.+.. .+|. -.+|++...+ .+.+. +.-.....
T Consensus 185 Nl~L~~~~~~k--lEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~k-lqrvsvtsipL~s~ 261 (545)
T PF11768_consen 185 NLHLLSCSGGK--LEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNK-LQRVSVTSIPLPSQ 261 (545)
T ss_pred cEEEEEecCCc--EEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCc-eeEEEEEEEecCCc
Confidence 56666666553 555555566666788899876556666543 2343 3456665431 12221 12246789
Q ss_pred eEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCC
Q 021121 109 VHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMG 183 (317)
Q Consensus 109 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 183 (317)
|.+++++|+.. .++.|+.||.|.+||...+... +....-.++.++|+|+ +.++++|+..|.+.+||+.-..
T Consensus 262 v~~ca~sp~E~-kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~-gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 262 VICCARSPSED-KLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPD-GAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ceEEecCcccc-eEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCC-CcEEEEEcCCceEEEEEeecCc
Confidence 99999999988 9999999999999998766333 3234566899999999 8999999999999999987543
No 317
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=3e-07 Score=79.95 Aligned_cols=113 Identities=18% Similarity=0.243 Sum_probs=81.6
Q ss_pred eEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEe
Q 021121 11 YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDT 90 (317)
Q Consensus 11 ~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~ 90 (317)
+-.+|+|. ...|+++.-. ..+.|.|.||--.. ++.... ..+-.+++++|+|.. ..|+.|-.-|.+.+|..
T Consensus 19 ti~SWHPs-ePlfAVA~fS---~er~GSVtIfadtG-EPqr~V----t~P~hatSLCWHpe~-~vLa~gwe~g~~~v~~~ 88 (1416)
T KOG3617|consen 19 TISSWHPS-EPLFAVASFS---PERGGSVTIFADTG-EPQRDV----TYPVHATSLCWHPEE-FVLAQGWEMGVSDVQKT 88 (1416)
T ss_pred cccccCCC-CceeEEEEec---CCCCceEEEEecCC-CCCccc----ccceehhhhccChHH-HHHhhccccceeEEEec
Confidence 34679996 4555555432 12368899885433 222211 122346779999985 68999999999999997
Q ss_pred CCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121 91 ALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD 137 (317)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 137 (317)
... +.-.....|..+|..+.|+++|. .++++..-|.|.+|...
T Consensus 89 ~~~---e~htv~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 89 NTT---ETHTVVETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCc---eeeeeccCCCCCceeEEecCCCC-eEEEcCCCceeEEEEee
Confidence 654 33344457999999999999998 99999999999999876
No 318
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.90 E-value=7.7e-08 Score=80.33 Aligned_cols=128 Identities=16% Similarity=0.192 Sum_probs=92.2
Q ss_pred eecCcceeEEEEecCCCCeEEEEEecccccccCc--eEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEc
Q 021121 4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNG--RVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVA 81 (317)
Q Consensus 4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 81 (317)
+.....+.++.||-..+..+.+.... ....++- .-.+|++...+.....+.....+..|.+++++|+. ..++.|+.
T Consensus 202 irTE~dPl~~~Fs~~~~~qi~tVE~s-~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E-~kLvlGC~ 279 (545)
T PF11768_consen 202 IRTENDPLDVEFSLNQPYQIHTVEQS-ISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSE-DKLVLGCE 279 (545)
T ss_pred EEecCCcEEEEccCCCCcEEEEEEEe-cCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCccc-ceEEEEec
Confidence 44556667888887545555544322 1111111 23678887665445566677889999999999997 59999999
Q ss_pred CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC
Q 021121 82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP 139 (317)
Q Consensus 82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 139 (317)
||.|.+||...+ ........-..+.++|+|+|. ++++|+..|.+.+||+.-.
T Consensus 280 DgSiiLyD~~~~-----~t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 280 DGSIILYDTTRG-----VTLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALS 331 (545)
T ss_pred CCeEEEEEcCCC-----eeeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecC
Confidence 999999998643 222333455678899999998 9999999999999998644
No 319
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=2.6e-07 Score=80.22 Aligned_cols=196 Identities=12% Similarity=0.121 Sum_probs=130.5
Q ss_pred EEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCC-----eEEEEeCCCCC----
Q 021121 113 DYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDC-----TLRIWDVREMG---- 183 (317)
Q Consensus 113 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~---- 183 (317)
+|++.+. .++.|+.+|.|.+++- .-+.++.++.+...+...-+.-+..++|++.+.|+ .+++||++..+
T Consensus 30 c~~s~~~-~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTG-SVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCc-eEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 3566666 8999999999988873 23444677776666333333334356777777665 48999997541
Q ss_pred c--e---eee----ccCccceEEEEecCCCCcEEEEEecCCcEEEEEcc---CCCccEEEEecCCCceeEEEecCCCCee
Q 021121 184 S--T---MII----PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR---NYRVPIAVLNGHGYAVRKVKFSPHRRNL 251 (317)
Q Consensus 184 ~--~---~~~----~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 251 (317)
+ . +.+ +....++.+++.+. +-+.+|+|-.+|.|..+.=. ..............+|+.+++..+++..
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence 1 1 111 12356788999998 88999999999999988421 1111122233456799999999998863
Q ss_pred EEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121 252 LASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP 314 (317)
Q Consensus 252 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~ 314 (317)
+.++. -..|.+|.+....+....+..|+..+.+-.+++. ...++.++ +..+.+|+.+...
T Consensus 187 lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~-t~qfIca~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 187 LFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDG-TYQFICAG-SEFLYFYDSDGRG 246 (933)
T ss_pred EEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCC-CccEEEec-CceEEEEcCCCcc
Confidence 44333 4569999998554445568888889999999986 33355444 3558888876543
No 320
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.89 E-value=1.2e-05 Score=63.38 Aligned_cols=234 Identities=15% Similarity=0.136 Sum_probs=142.1
Q ss_pred CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEc-----
Q 021121 7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVA----- 81 (317)
Q Consensus 7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----- 81 (317)
+.....++.+|. ....++..-.. .--..+||...... ...+..-....---.-.|++||. +|++.-.
T Consensus 4 P~RgH~~a~~p~-~~~avafaRRP-----G~~~~v~D~~~g~~-~~~~~a~~gRHFyGHg~fs~dG~-~LytTEnd~~~g 75 (305)
T PF07433_consen 4 PARGHGVAAHPT-RPEAVAFARRP-----GTFALVFDCRTGQL-LQRLWAPPGRHFYGHGVFSPDGR-LLYTTENDYETG 75 (305)
T ss_pred CccccceeeCCC-CCeEEEEEeCC-----CcEEEEEEcCCCce-eeEEcCCCCCEEecCEEEcCCCC-EEEEeccccCCC
Confidence 456678899995 23333333321 33578899877652 11111111111112467999995 6666533
Q ss_pred CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEc------------------CCCEEEEEEcCCCceeE
Q 021121 82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSS------------------WDDTVKLWTVDRPTSVR 143 (317)
Q Consensus 82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------------------~dg~v~iwd~~~~~~~~ 143 (317)
.|.|-|||.. .....+..+..|.-.-..+.+.|+++ .|+++. .+-.+...|..+++.+.
T Consensus 76 ~G~IgVyd~~--~~~~ri~E~~s~GIGPHel~l~pDG~-tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~ 152 (305)
T PF07433_consen 76 RGVIGVYDAA--RGYRRIGEFPSHGIGPHELLLMPDGE-TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLE 152 (305)
T ss_pred cEEEEEEECc--CCcEEEeEecCCCcChhhEEEcCCCC-EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceee
Confidence 4899999988 24566777777777777888999997 455441 23456667777887776
Q ss_pred Eee----ccccceEEEEEecCCCCeEEEEeCCCe-------EEEEeCCCCCceeeec-------cCccceEEEEecCCCC
Q 021121 144 TFK----EHAYCVYNATWNPRHSDVFCSASGDCT-------LRIWDVREMGSTMIIP-------AHEFEILACDWNKYDD 205 (317)
Q Consensus 144 ~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~-------~~~~~v~~i~~~~~~~ 205 (317)
+.. .|...+..+++.++ +..++..-..|. |-+++. ++.+..+. .....+-+|++++ ++
T Consensus 153 q~~Lp~~~~~lSiRHLa~~~~-G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~-~g 228 (305)
T PF07433_consen 153 QVELPPDLHQLSIRHLAVDGD-GTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADR-DG 228 (305)
T ss_pred eeecCccccccceeeEEecCC-CcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeC-CC
Confidence 633 36678999999988 655544433332 333332 22222222 3446789999998 76
Q ss_pred cEE-EEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeE
Q 021121 206 CLI-ASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTV 261 (317)
Q Consensus 206 ~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 261 (317)
..+ +++-..+.+.+||..+++. +....- ..+..++-.+++ ++++.+. |.+
T Consensus 229 ~~ia~tsPrGg~~~~~d~~tg~~-~~~~~l--~D~cGva~~~~~--f~~ssG~-G~~ 279 (305)
T PF07433_consen 229 RLIAVTSPRGGRVAVWDAATGRL-LGSVPL--PDACGVAPTDDG--FLVSSGQ-GQL 279 (305)
T ss_pred CEEEEECCCCCEEEEEECCCCCE-eecccc--CceeeeeecCCc--eEEeCCC-ccE
Confidence 655 5556778899999998763 333222 245566666665 5666554 443
No 321
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.7e-08 Score=79.96 Aligned_cols=204 Identities=15% Similarity=0.125 Sum_probs=144.2
Q ss_pred CCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC---CceeEEeeccccceEEEEEecCCCCeEEEEeC-CCeEEEEeCC
Q 021121 105 HTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR---PTSVRTFKEHAYCVYNATWNPRHSDVFCSASG-DCTLRIWDVR 180 (317)
Q Consensus 105 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~ 180 (317)
|...|+.+..... .++++++.||.++.|.-.. -+.+..+..|...+.+++.+.+ +.++.+.+. |..++++|+.
T Consensus 8 hrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~d-g~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYD-GWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEeeehh--heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcccc-ceeEeeccCcccceeEEEee
Confidence 6777777655533 3899999999999997543 1345556778899999999988 888888777 9999999998
Q ss_pred CCCceeeeccCccceEEEEecCCCC----cEEEEEecCCcEEEEEccCCCcc-EEEEecCCCceeEEEecCCCCeeEEee
Q 021121 181 EMGSTMIIPAHEFEILACDWNKYDD----CLIASASVDKSIKIWDVRNYRVP-IAVLNGHGYAVRKVKFSPHRRNLLASC 255 (317)
Q Consensus 181 ~~~~~~~~~~~~~~v~~i~~~~~~~----~~l~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~ 255 (317)
+-..+..++...- ...+.|....+ .+-++.-.++.+.++|-+...++ ...-.-|..+|.++.++|-+. .+++.
T Consensus 85 n~DminmiKL~~l-Pg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-s~vSi 162 (558)
T KOG0882|consen 85 NFDMINMIKLVDL-PGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-SAVSI 162 (558)
T ss_pred ccchhhhcccccC-CCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc-ceeec
Confidence 7655433332111 12223322122 22333346789999998876533 344456899999999999998 58888
Q ss_pred ecCCeEEEEecccc----c-ce---------eeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121 256 SYDMTVCLWDFMVE----D-AL---------VGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP 314 (317)
Q Consensus 256 ~~d~~i~vwd~~~~----~-~~---------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~ 314 (317)
...|.|.-|..... + .+ +..+........++.|+|+ +..+.+-+.|..|+++++.++.
T Consensus 163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~-g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD-GAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc-cCcccccCcccEEEEEEeccch
Confidence 88899999987631 1 01 1112223456789999999 8899999999999999988753
No 322
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=1.1e-07 Score=81.87 Aligned_cols=185 Identities=14% Similarity=0.076 Sum_probs=129.2
Q ss_pred CcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCce
Q 021121 106 TREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST 185 (317)
Q Consensus 106 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 185 (317)
...+.|++++ +. .++-|+.+|.|++++..... .+...|... .- .+.++++|+.||+|.|..+-+.+..
T Consensus 39 ~D~is~~av~--~~-~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH--DK-FFALGTHRGAVYLTTCQGNP--KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh--cc-eeeeccccceEEEEecCCcc--ccccccccc------cc-CCceEEEecCCCcEEEeeccCCccc
Confidence 4556777776 23 89999999999999986443 333334443 33 3899999999999999999888777
Q ss_pred eeeccCccceEEEEecCC----CCcEEEEEecCCcEEEEEccCCCccE-EEEecCCCceeEEEecCCCCeeEEeeecCCe
Q 021121 186 MIIPAHEFEILACDWNKY----DDCLIASASVDKSIKIWDVRNYRVPI-AVLNGHGYAVRKVKFSPHRRNLLASCSYDMT 260 (317)
Q Consensus 186 ~~~~~~~~~v~~i~~~~~----~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 260 (317)
.++. ...++.+++++|. ..+.+++|+..| +.++.-+-..... ..+....++|.++.|. |. ++|-++.+|
T Consensus 107 ~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~-lIAWand~G- 180 (846)
T KOG2066|consen 107 TQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GN-LIAWANDDG- 180 (846)
T ss_pred eeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--Cc-EEEEecCCC-
Confidence 7665 5678999999993 256889999888 7777654322211 2345567899999996 44 788777666
Q ss_pred EEEEecccccceeeeeecc-----cceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121 261 VCLWDFMVEDALVGRYDHH-----TEFAVGVDMSVLVEGLLASTGWDELVYVWQQG 311 (317)
Q Consensus 261 i~vwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~ 311 (317)
|+|||+.+.+.+......+ ...-..+.|.+. ..|+.| +..+|++..+.
T Consensus 181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~--~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE--DRLVIG-WGDSVKICSIK 233 (846)
T ss_pred cEEEeccccceeeccCCCCCCCCcccCCCceEecCC--CeEEEe-cCCeEEEEEEe
Confidence 9999998877443322222 123456788874 455555 55668888876
No 323
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.85 E-value=8.3e-10 Score=92.24 Aligned_cols=203 Identities=16% Similarity=0.233 Sum_probs=139.9
Q ss_pred CcceEEEEEecCCC-CEEEEEcCCCEEEEEEcCCCcee--EEeeccccceEEEEEecCCCCeEEEEe----CCCeEEEEe
Q 021121 106 TREVHSADYNPTRR-DSFITSSWDDTVKLWTVDRPTSV--RTFKEHAYCVYNATWNPRHSDVFCSAS----GDCTLRIWD 178 (317)
Q Consensus 106 ~~~v~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~i~i~d 178 (317)
...+.|++++-+.. .++++|..+|.|.+-.++...-. ....++..+.++++|++-+.+.|++|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34566777654332 48889999999999888765332 334567788999999998778887763 356799999
Q ss_pred CCCC--Ccee--eecc-CccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEE
Q 021121 179 VREM--GSTM--IIPA-HEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLA 253 (317)
Q Consensus 179 ~~~~--~~~~--~~~~-~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 253 (317)
+.++ .+.. .+.. ......+++|.. +.+++.+|.....+.++|+|........ -....+..+..+|-...+++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~~s--vnTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSVSS--VNTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred cccccCCCccccccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhhhhhhh--hhhhhcccceecCCCCCcee
Confidence 9876 2211 1221 334456889986 8899999999999999999954321222 23345677888885544676
Q ss_pred eeecCCeEEEEe-cccccceeeeeeccc----ceeEeEEEEeccCCeEEEeec-CCcEEEEecCC
Q 021121 254 SCSYDMTVCLWD-FMVEDALVGRYDHHT----EFAVGVDMSVLVEGLLASTGW-DELVYVWQQGM 312 (317)
Q Consensus 254 ~~~~d~~i~vwd-~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~s~~~-dg~i~~w~~~~ 312 (317)
+.. ||.|.+|| .++-+.++..+...+ ..+..++|+|....++++... .++|+++++..
T Consensus 213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 213 SNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 555 99999999 444443333333222 248999999987668887774 57899998864
No 324
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.83 E-value=1.3e-08 Score=54.73 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=34.9
Q ss_pred eeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121 272 LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309 (317)
Q Consensus 272 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~ 309 (317)
++..+.+|...|++++|+|+ +.+|++++.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPD-GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence 56789999999999999999 89999999999999997
No 325
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.83 E-value=1.6e-08 Score=54.34 Aligned_cols=38 Identities=37% Similarity=0.833 Sum_probs=35.8
Q ss_pred ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEe
Q 021121 140 TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD 178 (317)
Q Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d 178 (317)
+++..+++|..+|++++|+|+ +.++++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPD-GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence 567889999999999999999 99999999999999997
No 326
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.81 E-value=4.6e-09 Score=91.18 Aligned_cols=196 Identities=17% Similarity=0.263 Sum_probs=136.4
Q ss_pred CCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCC-eEE
Q 021121 97 NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDC-TLR 175 (317)
Q Consensus 97 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~ 175 (317)
+....+..|....+|++|+-+.+ .|+.|+..|.|+++++.+|.......+|.++++-+.=+.++..+|.+++... ...
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeecCCc-eEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 45566778899999999998877 9999999999999999999999999999999999998888444443333333 467
Q ss_pred EEeCCC-CCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec---CCCceeEEEecCCCCee
Q 021121 176 IWDVRE-MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG---HGYAVRKVKFSPHRRNL 251 (317)
Q Consensus 176 i~d~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~ 251 (317)
+|++.+ +....++. .-.++.|+. ....-+.|+......+||+++...+...+.+ .+..-++..|+|+.. +
T Consensus 1171 LW~~~s~~~~~Hsf~----ed~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~-L 1244 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD----EDKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT-L 1244 (1516)
T ss_pred HhccccccCcccccc----ccceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc-e
Confidence 899864 23333443 235788887 4555555666677999999987653332322 223347889999998 4
Q ss_pred EEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121 252 LASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 252 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
+. .|| .+||++..+ .+..+......+ .=.|+|. +..++.-+ -|||+.+
T Consensus 1245 Il---ndG--vLWDvR~~~-aIh~FD~ft~~~-~G~FHP~-g~eVIINS-----EIwD~RT 1292 (1516)
T KOG1832|consen 1245 IL---NDG--VLWDVRIPE-AIHRFDQFTDYG-GGGFHPS-GNEVIINS-----EIWDMRT 1292 (1516)
T ss_pred Ee---eCc--eeeeeccHH-HHhhhhhheecc-cccccCC-CceEEeec-----hhhhhHH
Confidence 54 466 479999875 455555544222 2358888 55555544 3677654
No 327
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.80 E-value=1.6e-05 Score=65.96 Aligned_cols=256 Identities=9% Similarity=0.096 Sum_probs=134.5
Q ss_pred CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeecc-------C---
Q 021121 36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHE-------H--- 105 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~-------~--- 105 (317)
.+.+.+||+++.. ...+.. ....+....|+|+| +.++... ++.|.+.+...+. ...+ +..+ -
T Consensus 22 ~~~y~i~d~~~~~--~~~l~~--~~~~~~~~~~sP~g-~~~~~v~-~~nly~~~~~~~~-~~~l-T~dg~~~i~nG~~dw 93 (353)
T PF00930_consen 22 KGDYYIYDIETGE--ITPLTP--PPPKLQDAKWSPDG-KYIAFVR-DNNLYLRDLATGQ-ETQL-TTDGEPGIYNGVPDW 93 (353)
T ss_dssp EEEEEEEETTTTE--EEESS---EETTBSEEEE-SSS-TEEEEEE-TTEEEEESSTTSE-EEES-ES--TTTEEESB--H
T ss_pred ceeEEEEecCCCc--eEECcC--CccccccceeecCC-CeeEEEe-cCceEEEECCCCC-eEEe-ccccceeEEcCccce
Confidence 5689999998854 222221 25678899999998 4666664 5789998875441 0101 1111 0
Q ss_pred ------CcceEEEEEecCCCCEEEEEcC-CC-----------------------------------EEEEEEcCCCceeE
Q 021121 106 ------TREVHSADYNPTRRDSFITSSW-DD-----------------------------------TVKLWTVDRPTSVR 143 (317)
Q Consensus 106 ------~~~v~~~~~~~~~~~~l~~~~~-dg-----------------------------------~v~iwd~~~~~~~~ 143 (317)
-+.-..+.|+||++ .|+.... +. .+.++|+.+++...
T Consensus 94 vyeEEv~~~~~~~~WSpd~~-~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~ 172 (353)
T PF00930_consen 94 VYEEEVFDRRSAVWWSPDSK-YLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTE 172 (353)
T ss_dssp HHHHHTSSSSBSEEE-TTSS-EEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCE
T ss_pred eccccccccccceEECCCCC-EEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEE
Confidence 11235688999998 5554322 21 23344554443321
Q ss_pred E-e----eccccceEEEEEecCCCC-eEEE-EeCC---CeEEEEeCCCCCceeeecc-Cccc---eEEEEec-CCCCcEE
Q 021121 144 T-F----KEHAYCVYNATWNPRHSD-VFCS-ASGD---CTLRIWDVREMGSTMIIPA-HEFE---ILACDWN-KYDDCLI 208 (317)
Q Consensus 144 ~-~----~~~~~~v~~~~~~~~~~~-~l~~-~~~d---g~i~i~d~~~~~~~~~~~~-~~~~---v~~i~~~-~~~~~~l 208 (317)
. . .....-+..+.|.++ +. +++. ...+ ..+.++|..+++....... .... -....+. +.+..++
T Consensus 173 ~~~~~~~~~~~~yl~~v~W~~d-~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l 251 (353)
T PF00930_consen 173 LDPPNSLNPQDYYLTRVGWSPD-GKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFL 251 (353)
T ss_dssp E---HHHHTSSEEEEEEEEEET-TEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEE
T ss_pred eeeccccCCCccCcccceecCC-CcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEE
Confidence 1 1 123446788999998 55 3333 3333 2467778877655433321 1111 1244443 5466677
Q ss_pred EEEecCCcEEEEEccCCCccEEEEecCCCceeE-EEecCCCCeeEEeeecCC--eEEEEecccc-cceeeeeecccceeE
Q 021121 209 ASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK-VKFSPHRRNLLASCSYDM--TVCLWDFMVE-DALVGRYDHHTEFAV 284 (317)
Q Consensus 209 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~d~--~i~vwd~~~~-~~~~~~~~~~~~~v~ 284 (317)
.....+|.-++|-+.........+....-.|.. +.++++++.+.+++..++ .-.+|.+... ......+......-.
T Consensus 252 ~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~ 331 (353)
T PF00930_consen 252 WISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHY 331 (353)
T ss_dssp EEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTE
T ss_pred EEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCce
Confidence 777777765555444333334555555556744 778888886666666532 3344443333 222334443333226
Q ss_pred eEEEEeccCCeEEEeec
Q 021121 285 GVDMSVLVEGLLASTGW 301 (317)
Q Consensus 285 ~~~~~~~~~~~l~s~~~ 301 (317)
.+.|||++..++.+++.
T Consensus 332 ~~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 332 SASFSPDGKYYVDTYSG 348 (353)
T ss_dssp EEEE-TTSSEEEEEEES
T ss_pred EEEECCCCCEEEEEEcC
Confidence 89999994445555553
No 328
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.77 E-value=7.3e-06 Score=70.08 Aligned_cols=138 Identities=12% Similarity=0.095 Sum_probs=89.9
Q ss_pred CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceee---ccCCcceEEE
Q 021121 36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSL---HEHTREVHSA 112 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~---~~~~~~v~~~ 112 (317)
.|.+++|+-..+. ............+..+..+++. .++|+|+..|.|.++-+...........- +.|+..|+++
T Consensus 54 ~G~lyl~~R~~~~--~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal 130 (726)
T KOG3621|consen 54 AGSVYLYNRHTGE--MRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTAL 130 (726)
T ss_pred cceEEEEecCchh--hhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEE
Confidence 7899999987654 2222222234445566677775 79999999999999988764222222111 2378899999
Q ss_pred EEecCCCCEEEEEcCCCEEEEEEcCCC----ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCC
Q 021121 113 DYNPTRRDSFITSSWDDTVKLWTVDRP----TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181 (317)
Q Consensus 113 ~~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 181 (317)
+|++++. .+++|...|.|..-.+... ...+.+-...++|..+.... ..+|++.... ..+++++.
T Consensus 131 ~Ws~~~~-k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl~r--~~Lc~tE~ 198 (726)
T KOG3621|consen 131 EWSKNGM-KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTLTR--CILCQTEA 198 (726)
T ss_pred Eeccccc-EEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhhhh--hheeecch
Confidence 9999998 9999999999999888762 11222333456777777763 3444443332 23555544
No 329
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=7.7e-09 Score=89.84 Aligned_cols=190 Identities=16% Similarity=0.188 Sum_probs=134.8
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCC-EEEEEEc
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD-TVKLWTV 136 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~v~iwd~ 136 (317)
++....+|++|+-.. +.|++|+..|.|++|++.++ .......+|.++|+-+.-+.+|...|.+++... -..+|++
T Consensus 1099 d~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG---~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSG---SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred ccccceeeEEeecCC-ceEEeeeccceEEEEEccCc---cccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence 577889999999875 69999999999999999987 667778899999999999999984555544444 4678998
Q ss_pred CC-CceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec----cCccceEEEEecCCCCcEEEEE
Q 021121 137 DR-PTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP----AHEFEILACDWNKYDDCLIASA 211 (317)
Q Consensus 137 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~v~~i~~~~~~~~~l~~~ 211 (317)
.+ +...+.+. .-.++.|+.. ...-+.|+......+||++++.++.++- +....-++..|+| ...+++
T Consensus 1175 ~s~~~~~Hsf~----ed~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP-~D~LIl-- 1246 (1516)
T KOG1832|consen 1175 SSTGGPRHSFD----EDKAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP-CDTLIL-- 1246 (1516)
T ss_pred ccccCcccccc----ccceeehhhh-HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC-CcceEe--
Confidence 65 33444443 2456777765 4444456666678999999987776632 1222337788999 666665
Q ss_pred ecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121 212 SVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED 270 (317)
Q Consensus 212 ~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~ 270 (317)
.|| .+||.|..+ .++.+......+ .-.|+|.|.. ++.-+ .|||+++-+
T Consensus 1247 -ndG--vLWDvR~~~-aIh~FD~ft~~~-~G~FHP~g~e-VIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1247 -NDG--VLWDVRIPE-AIHRFDQFTDYG-GGGFHPSGNE-VIINS-----EIWDMRTFK 1294 (1516)
T ss_pred -eCc--eeeeeccHH-HHhhhhhheecc-cccccCCCce-EEeec-----hhhhhHHHH
Confidence 355 489999864 466655444222 3469999986 44333 589999865
No 330
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=1.1e-06 Score=76.46 Aligned_cols=110 Identities=15% Similarity=0.234 Sum_probs=83.8
Q ss_pred eeEEEecCCCCCeEEEEEc----CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC
Q 021121 63 VYDLAWSESHDSLLIAAVA----DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR 138 (317)
Q Consensus 63 v~~~~~~~~~~~~l~~~~~----dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 138 (317)
-+-..|+|..+ ++++++. .|.|.||- +++ ++..... ..-.+++++|+|..- .|+.|-.-|.+.+|...+
T Consensus 18 sti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtG---EPqr~Vt-~P~hatSLCWHpe~~-vLa~gwe~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 18 STISSWHPSEP-LFAVASFSPERGGSVTIFA-DTG---EPQRDVT-YPVHATSLCWHPEEF-VLAQGWEMGVSDVQKTNT 90 (1416)
T ss_pred ccccccCCCCc-eeEEEEecCCCCceEEEEe-cCC---CCCcccc-cceehhhhccChHHH-HHhhccccceeEEEecCC
Confidence 34457999874 7777764 58899985 223 3332221 122356699999876 888888889999999887
Q ss_pred CceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCC
Q 021121 139 PTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180 (317)
Q Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 180 (317)
.+.-.....|+.++..+.|+|+ +..++++..-|.+.+|...
T Consensus 91 ~e~htv~~th~a~i~~l~wS~~-G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 91 TETHTVVETHPAPIQGLDWSHD-GTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ceeeeeccCCCCCceeEEecCC-CCeEEEcCCCceeEEEEee
Confidence 7766666679999999999999 8899999999999999876
No 331
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.69 E-value=6.2e-06 Score=69.33 Aligned_cols=191 Identities=15% Similarity=0.176 Sum_probs=114.9
Q ss_pred CCCCeeEEEecCCCCCeEEEEEcC---CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCE--EEE
Q 021121 59 TADGVYDLAWSESHDSLLIAAVAD---GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDT--VKL 133 (317)
Q Consensus 59 ~~~~v~~~~~~~~~~~~l~~~~~d---g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--v~i 133 (317)
....+..-+|+|++..+....-.. ..+.+++++.+.. ..+..+. +.-..-+|+|||+.++++...||. |.+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~-~~i~~~~---g~~~~P~fspDG~~l~f~~~rdg~~~iy~ 266 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR-PVILNFN---GNNGAPAFSPDGSKLAFSSSRDGSPDIYL 266 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc-ceeeccC---CccCCccCCCCCCEEEEEECCCCCccEEE
Confidence 344577778999986544443222 3588889887622 2222233 333446899999977888888886 555
Q ss_pred EEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCe--EEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEE
Q 021121 134 WTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCT--LRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASA 211 (317)
Q Consensus 134 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~ 211 (317)
+|+.+++ ...+....+.-..=.|+|++..++++.+..|. |.++|.+.... ..+......-..-.|+| ++++++..
T Consensus 267 ~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~Sp-dG~~i~~~ 343 (425)
T COG0823 267 MDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSP-DGDKIVFE 343 (425)
T ss_pred EcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCC-CCCEEEEE
Confidence 5776655 33354444444467899996666666666676 55566655444 33332222223778999 88888877
Q ss_pred ecC-Cc--EEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecC
Q 021121 212 SVD-KS--IKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYD 258 (317)
Q Consensus 212 ~~d-~~--i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 258 (317)
+.. |. |.+.|+.+... ...+ ........-.|.|+++.++.+++.-
T Consensus 344 ~~~~g~~~i~~~~~~~~~~-~~~l-t~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 344 SSSGGQWDIDKNDLASGGK-IRIL-TSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred eccCCceeeEEeccCCCCc-EEEc-cccccCCCCCcCCCCceEEEeccCC
Confidence 643 43 66666665543 2222 2333445667888888655444433
No 332
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.67 E-value=3.6e-05 Score=65.07 Aligned_cols=222 Identities=14% Similarity=0.117 Sum_probs=119.3
Q ss_pred CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC
Q 021121 59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR 138 (317)
Q Consensus 59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 138 (317)
..-....+.++|++ +.+++ +.+|.-.++.... .+. ...+......|.+.+ .+++-...+.|.++.--+
T Consensus 31 ~~~~p~~ls~npng-r~v~V-~g~geY~iyt~~~------~r~--k~~G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 31 CEIYPQSLSHNPNG-RFVLV-CGDGEYEIYTALA------WRN--KAFGSGLSFVWSSRN--RYAVLESSSTIKIYKNFK 98 (443)
T ss_dssp -SS--SEEEE-TTS-SEEEE-EETTEEEEEETTT------TEE--EEEEE-SEEEE-TSS--EEEEE-TTS-EEEEETTE
T ss_pred CCcCCeeEEECCCC-CEEEE-EcCCEEEEEEccC------Ccc--cccCceeEEEEecCc--cEEEEECCCeEEEEEcCc
Confidence 34457899999998 46666 5578888888321 111 123455667898854 577777788999963222
Q ss_pred CceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEE
Q 021121 139 PTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIK 218 (317)
Q Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~ 218 (317)
.+..+.++.. ..+..+-. |.+|...+.+ .|.+||..+++.+..+... +|..+.|++ ++.+++..+.+ .+.
T Consensus 99 ~~~~k~i~~~-~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~-~g~~val~t~~-~i~ 168 (443)
T PF04053_consen 99 NEVVKSIKLP-FSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSD-DGELVALVTKD-SIY 168 (443)
T ss_dssp E-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-T-TSSEEEEE-S--SEE
T ss_pred cccceEEcCC-cccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEEC-CCCEEEEEeCC-eEE
Confidence 2332333322 22444432 5666666544 8999999999999888743 489999999 89999888755 677
Q ss_pred EEEccCC----------CccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEE
Q 021121 219 IWDVRNY----------RVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDM 288 (317)
Q Consensus 219 v~d~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~ 288 (317)
+++.... +........-...|.+.+|..+ -++.+... .++- +..++ ...+..-..+++=+..
T Consensus 169 il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~--~lkY--l~~Ge--~~~i~~ld~~~yllgy 240 (443)
T PF04053_consen 169 ILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN--HLKY--LVNGE--TGIIAHLDKPLYLLGY 240 (443)
T ss_dssp EEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT--EEEE--EETTE--EEEEEE-SS--EEEEE
T ss_pred EEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC--eEEE--EEcCC--cceEEEcCCceEEEEE
Confidence 7765432 0123444433568899999866 35555443 6776 44444 1223333456676777
Q ss_pred EeccCCeEEEeecCCcEEEEecC
Q 021121 289 SVLVEGLLASTGWDELVYVWQQG 311 (317)
Q Consensus 289 ~~~~~~~l~s~~~dg~i~~w~~~ 311 (317)
.+. .+.+.....|+.+..+.++
T Consensus 241 ~~~-~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 241 LPK-ENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp ETT-TTEEEEE-TT--EEEEE--
T ss_pred Ecc-CCEEEEEECCCCEEEEEEC
Confidence 775 5788888889988888765
No 333
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.64 E-value=2.6e-05 Score=64.96 Aligned_cols=233 Identities=9% Similarity=0.074 Sum_probs=127.6
Q ss_pred CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCC----------------------------------------Ccee
Q 021121 62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTAN----------------------------------------PIRS 101 (317)
Q Consensus 62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~----------------------------------------~~~~ 101 (317)
.|+.+.|+++. .-|++|...|.|-+|.+...+... +...
T Consensus 3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 47889999986 589999999999999765431110 1111
Q ss_pred eccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee--c------cccceEEEEEec----CCC---CeEE
Q 021121 102 LHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK--E------HAYCVYNATWNP----RHS---DVFC 166 (317)
Q Consensus 102 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~------~~~~v~~~~~~~----~~~---~~l~ 166 (317)
++...++|++++.+.-| +++.|..+|.+.|.|++....+..-. . ....++++.|.. +++ -+++
T Consensus 82 ~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 23346889999998665 89999999999999998877666532 1 234577888862 112 3688
Q ss_pred EEeCCCeEEEEeCCC-C--Cce----eeeccCccceEEEE-ecCC--------------------CCcEEEEEecCCcEE
Q 021121 167 SASGDCTLRIWDVRE-M--GST----MIIPAHEFEILACD-WNKY--------------------DDCLIASASVDKSIK 218 (317)
Q Consensus 167 ~~~~dg~i~i~d~~~-~--~~~----~~~~~~~~~v~~i~-~~~~--------------------~~~~l~~~~~d~~i~ 218 (317)
+|+..|.+.+|.+.- . .-. .....+..++..+. ++.. ...+++++ .+..++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~ir 238 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDIR 238 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceE
Confidence 899999999998751 1 111 11113445555444 2111 11244444 467899
Q ss_pred EEEccCCCccEEEEecCCCceeEEEecC----CCCeeEEeeecCCeEEEEecccccceeeeee---cccceeEeEEEEec
Q 021121 219 IWDVRNYRVPIAVLNGHGYAVRKVKFSP----HRRNLLASCSYDMTVCLWDFMVEDALVGRYD---HHTEFAVGVDMSVL 291 (317)
Q Consensus 219 v~d~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~---~~~~~v~~~~~~~~ 291 (317)
++...+.+...+.+ ........+.+-+ .+...|++-..+|.|+++.+...+++....- .....+...+++++
T Consensus 239 v~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~ 317 (395)
T PF08596_consen 239 VFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRN 317 (395)
T ss_dssp EE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TT
T ss_pred EEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCC
Confidence 99998876534444 2323344455532 2333688888999999999988774432211 12234556777887
Q ss_pred cCCeEEEee
Q 021121 292 VEGLLASTG 300 (317)
Q Consensus 292 ~~~~l~s~~ 300 (317)
|+.++-.+
T Consensus 318 -Gdi~~~~g 325 (395)
T PF08596_consen 318 -GDIFYWTG 325 (395)
T ss_dssp -S-EEEE-S
T ss_pred -CCEEEEeC
Confidence 56555554
No 334
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.59 E-value=2.4e-05 Score=69.88 Aligned_cols=139 Identities=18% Similarity=0.190 Sum_probs=98.2
Q ss_pred EEEE-EcCCCEEEEEEcCCCceeEEeeccccc-eEEEEEecC------CCCeEEEEeCCCeEEEEeCCCCCc-eee--e-
Q 021121 121 SFIT-SSWDDTVKLWTVDRPTSVRTFKEHAYC-VYNATWNPR------HSDVFCSASGDCTLRIWDVREMGS-TMI--I- 188 (317)
Q Consensus 121 ~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~------~~~~l~~~~~dg~i~i~d~~~~~~-~~~--~- 188 (317)
+|+. ......|+-.|++.|+.+..+..+... |..+ .|+ ...-.+.|-.+..+..||+|-... +.. .
T Consensus 495 mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 495 MILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred eEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 4443 345688999999999999999877653 4444 342 123345788888999999996531 111 1
Q ss_pred -ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEec
Q 021121 189 -PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266 (317)
Q Consensus 189 -~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~ 266 (317)
........|++-+. ..+||+|+.+|.||+||- .+......+.+-+.+|..|..+.+|+.+|+|+ +..+.+++.
T Consensus 573 ~Y~~~~~Fs~~aTt~--~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t 646 (794)
T PF08553_consen 573 QYSSKNNFSCFATTE--DGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDT 646 (794)
T ss_pred ccccCCCceEEEecC--CceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEE
Confidence 12344577787764 448999999999999994 33444566777889999999999999666555 567778775
No 335
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.58 E-value=0.00013 Score=55.41 Aligned_cols=101 Identities=12% Similarity=0.004 Sum_probs=64.7
Q ss_pred CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEE-EEE
Q 021121 36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHS-ADY 114 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~-~~~ 114 (317)
.+.+.-.|...++...+.+ -...|.+-+.- -| .+++.|...|.+.+.+.+++ .....+... +.|.+ ...
T Consensus 32 s~~~~avd~~sG~~~We~i----lg~RiE~sa~v-vg-dfVV~GCy~g~lYfl~~~tG---s~~w~f~~~-~~vk~~a~~ 101 (354)
T KOG4649|consen 32 SGIVIAVDPQSGNLIWEAI----LGVRIECSAIV-VG-DFVVLGCYSGGLYFLCVKTG---SQIWNFVIL-ETVKVRAQC 101 (354)
T ss_pred CceEEEecCCCCcEEeehh----hCceeeeeeEE-EC-CEEEEEEccCcEEEEEecch---hheeeeeeh-hhhccceEE
Confidence 6777777777665322222 12223332222 24 47999999999999999887 344333321 22222 234
Q ss_pred ecCCCCEEEEEcCCCEEEEEEcCCCceeEEeec
Q 021121 115 NPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKE 147 (317)
Q Consensus 115 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 147 (317)
.+++. ++..|+.|+..+..|.++..++.+.+.
T Consensus 102 d~~~g-lIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 102 DFDGG-LIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred cCCCc-eEEEecCCCcEEEecccccceEEeccc
Confidence 56666 899999999999999998877776653
No 336
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.57 E-value=3.1e-05 Score=66.79 Aligned_cols=175 Identities=11% Similarity=0.000 Sum_probs=109.3
Q ss_pred cCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeC---C-CeEEEEeCCCCCceeeeccCccceEEEEec
Q 021121 126 SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASG---D-CTLRIWDVREMGSTMIIPAHEFEILACDWN 201 (317)
Q Consensus 126 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d-g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~ 201 (317)
-..+.+.+.|.++.+...++.-. +....++++|+ +.++++.+. . .++...+.........+.... + .++.
T Consensus 212 ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spd-Gk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--i--ea~v 285 (635)
T PRK02888 212 KYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYD-GKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--I--EEAV 285 (635)
T ss_pred ceeEEEEEEECccceEEEEEEeC-CCcccceECCC-CCEEEEeccCcccCcceeeeccccCceEEEEchHH--H--HHhh
Confidence 34566777788877766666533 35577889998 666655542 1 223333332222111111000 0 0223
Q ss_pred CCCCcEEEEEecCCcEEEEEccC----CCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccc------
Q 021121 202 KYDDCLIASASVDKSIKIWDVRN----YRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDA------ 271 (317)
Q Consensus 202 ~~~~~~l~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~------ 271 (317)
+ ++++... .++.|.+.|.++ .......+. -......+.++|||+++++++..+.++.|.|+.+.+.
T Consensus 286 k-dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 286 K-AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred h-CCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 3 5665555 357899999987 333334443 3446689999999998888888899999999988552
Q ss_pred -----eeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121 272 -----LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 272 -----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
+.....- ...-...+|.++ +....|--.|..|..|++..
T Consensus 362 ~~~~~vvaevev-GlGPLHTaFDg~-G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 362 KPRDAVVAEPEL-GLGPLHTAFDGR-GNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CccceEEEeecc-CCCcceEEECCC-CCEEEeEeecceeEEEehHH
Confidence 2222222 223446788887 67888888899999999875
No 337
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.55 E-value=0.00026 Score=61.51 Aligned_cols=226 Identities=9% Similarity=0.079 Sum_probs=127.7
Q ss_pred CeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcc-----eE-EEEEecCCCCEEEEEc---------CCCEEEEEEcCC
Q 021121 74 SLLIAAVADGSVKIYDTALPPTANPIRSLHEHTRE-----VH-SADYNPTRRDSFITSS---------WDDTVKLWTVDR 138 (317)
Q Consensus 74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~-----v~-~~~~~~~~~~~l~~~~---------~dg~v~iwd~~~ 138 (317)
..++.++.+|.|.-+|.+++ +.+......... +. ...+.. . .++.++ .+|.+..+|.++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG---~~~W~~~~~~~~~~~~~i~ssP~v~~--~-~v~vg~~~~~~~~~~~~g~v~alD~~T 184 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETG---KQVWKFGNNDQVPPGYTMTGAPTIVK--K-LVIIGSSGAEFFACGVRGALRAYDVET 184 (488)
T ss_pred CeEEEecCCCeEEEEECCCC---CEeeeecCCCCcCcceEecCCCEEEC--C-EEEEeccccccccCCCCcEEEEEECCC
Confidence 36778888999999998876 444333321110 11 112221 2 455553 468899999999
Q ss_pred CceeEEeeccccc--------------------e-EEEEEecCCCCeEEEEeCCC------------------eEEEEeC
Q 021121 139 PTSVRTFKEHAYC--------------------V-YNATWNPRHSDVFCSASGDC------------------TLRIWDV 179 (317)
Q Consensus 139 ~~~~~~~~~~~~~--------------------v-~~~~~~~~~~~~l~~~~~dg------------------~i~i~d~ 179 (317)
++.+..+...... + ...++.+. ..+++.++.++ .|.-+|.
T Consensus 185 G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~-~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~ 263 (488)
T cd00216 185 GKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPK-TNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDA 263 (488)
T ss_pred CceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCC-CCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcC
Confidence 9888776532110 0 12333444 45677776555 7999999
Q ss_pred CCCCceeeeccCccceE------EEEec---CCCC---cEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCC
Q 021121 180 REMGSTMIIPAHEFEIL------ACDWN---KYDD---CLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPH 247 (317)
Q Consensus 180 ~~~~~~~~~~~~~~~v~------~i~~~---~~~~---~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 247 (317)
++++..-.++....... ...+. ..++ ..++.++.+|.+..+|.++++. +...... ...++.+|
T Consensus 264 ~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~-~W~~~~~---~~~~~~~~- 338 (488)
T cd00216 264 DTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL-ISARPEV---EQPMAYDP- 338 (488)
T ss_pred CCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE-eeEeEee---ccccccCC-
Confidence 99988877642211110 00111 0122 2677888899999999999875 3332211 11233444
Q ss_pred CCeeEEe-----------------eecCCeEEEEecccccceeeeeec-cc------cee--EeEEEEeccCCeEEEeec
Q 021121 248 RRNLLAS-----------------CSYDMTVCLWDFMVEDALVGRYDH-HT------EFA--VGVDMSVLVEGLLASTGW 301 (317)
Q Consensus 248 ~~~~l~~-----------------~~~d~~i~vwd~~~~~~~~~~~~~-~~------~~v--~~~~~~~~~~~~l~s~~~ 301 (317)
+. +++. ...+|.+.-.|..+++.+-+.-.. +. .+. ..+.. . +.+|+.++.
T Consensus 339 ~~-vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~-g~~v~~g~~ 414 (488)
T cd00216 339 GL-VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--A-GNLVFAGAA 414 (488)
T ss_pred ce-EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--c-CCeEEEECC
Confidence 22 2221 124677888888888744332221 00 111 11222 2 568888889
Q ss_pred CCcEEEEecCCCCC
Q 021121 302 DELVYVWQQGMDPR 315 (317)
Q Consensus 302 dg~i~~w~~~~~~~ 315 (317)
||.|+.+|..+.+.
T Consensus 415 dG~l~ald~~tG~~ 428 (488)
T cd00216 415 DGYFRAFDATTGKE 428 (488)
T ss_pred CCeEEEEECCCCce
Confidence 99999999876543
No 338
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.54 E-value=1.7e-05 Score=66.79 Aligned_cols=167 Identities=13% Similarity=0.102 Sum_probs=103.5
Q ss_pred ceeeccCCcceEEEEEecCCCCEEEEE--cCC-CEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCe--
Q 021121 99 IRSLHEHTREVHSADYNPTRRDSFITS--SWD-DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCT-- 173 (317)
Q Consensus 99 ~~~~~~~~~~v~~~~~~~~~~~~l~~~--~~d-g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-- 173 (317)
...+......+..-+|+|++..+.... ... ..+.++++++++...... ..+.-..-+|+|++..++++...||.
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~ 263 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPD 263 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCcc
Confidence 334444456677788999988433332 222 469999999887665554 34445667899997777777777776
Q ss_pred EEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEe-cCCc--EEEEEccCCCccEEEEecCCCceeEEEecCCCCe
Q 021121 174 LRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASAS-VDKS--IKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRN 250 (317)
Q Consensus 174 i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~d~~--i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 250 (317)
|+++|+..+... .+......-..-.|+| +|+.++-.+ ..|. |.++|...... ..+......-..-.|+|+|+.
T Consensus 264 iy~~dl~~~~~~-~Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~--~riT~~~~~~~~p~~SpdG~~ 339 (425)
T COG0823 264 IYLMDLDGKNLP-RLTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQV--TRLTFSGGGNSNPVWSPDGDK 339 (425)
T ss_pred EEEEcCCCCcce-ecccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCce--eEeeccCCCCcCccCCCCCCE
Confidence 666677766533 3443333334678999 777766654 4444 66666665443 333333222237789999996
Q ss_pred eEEeeecCCe--EEEEeccccc
Q 021121 251 LLASCSYDMT--VCLWDFMVED 270 (317)
Q Consensus 251 ~l~~~~~d~~--i~vwd~~~~~ 270 (317)
+++....+|. |.+.|+.++.
T Consensus 340 i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 340 IVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred EEEEeccCCceeeEEeccCCCC
Confidence 5555544454 6666665554
No 339
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.54 E-value=0.0002 Score=55.60 Aligned_cols=198 Identities=12% Similarity=0.142 Sum_probs=110.4
Q ss_pred cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEE
Q 021121 8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKI 87 (317)
Q Consensus 8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 87 (317)
..+..++|+|+ .+.+++...+ .+.|..++.+ +..+..+ .+...+..-.|++..++ .++++.-.++.+.+
T Consensus 22 ~e~SGLTy~pd-~~tLfaV~d~------~~~i~els~~--G~vlr~i-~l~g~~D~EgI~y~g~~-~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 22 DELSGLTYNPD-TGTLFAVQDE------PGEIYELSLD--GKVLRRI-PLDGFGDYEGITYLGNG-RYVLSEERDQRLYI 90 (248)
T ss_dssp S-EEEEEEETT-TTEEEEEETT------TTEEEEEETT----EEEEE-E-SS-SSEEEEEE-STT-EEEEEETTTTEEEE
T ss_pred CCccccEEcCC-CCeEEEEECC------CCEEEEEcCC--CCEEEEE-eCCCCCCceeEEEECCC-EEEEEEcCCCcEEE
Confidence 35899999996 4556666654 7788777764 2223333 33445668888998765 45555445889999
Q ss_pred EEeCCCCCCCCce---ee-----ccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC---CceeEEe--------ecc
Q 021121 88 YDTALPPTANPIR---SL-----HEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR---PTSVRTF--------KEH 148 (317)
Q Consensus 88 ~~~~~~~~~~~~~---~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~---~~~~~~~--------~~~ 148 (317)
+++.......... .+ ..++..+..++|.|.+. .|+.+-...-..++.+.. ...+... ...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~-~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN-RLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETTTT-EEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCC-EEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 9985432211111 11 13456789999999877 566666665666666653 2221111 112
Q ss_pred ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCc---------cceEEEEecCCCCcEEEEEecCCcEEE
Q 021121 149 AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHE---------FEILACDWNKYDDCLIASASVDKSIKI 219 (317)
Q Consensus 149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~v~~i~~~~~~~~~l~~~~~d~~i~v 219 (317)
...+.+++++|..+++++.......|..+| .+++.+..+.-.. ...-.|++.+ +|+++++ ++-+..++
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIv-sEpNlfy~ 246 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIV-SEPNLFYR 246 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEE-ETTTEEEE
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEE-cCCceEEE
Confidence 345889999999888888888899999999 5666655443221 2467899998 7766655 45555555
Q ss_pred E
Q 021121 220 W 220 (317)
Q Consensus 220 ~ 220 (317)
|
T Consensus 247 f 247 (248)
T PF06977_consen 247 F 247 (248)
T ss_dssp E
T ss_pred e
Confidence 4
No 340
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.53 E-value=0.00021 Score=55.44 Aligned_cols=200 Identities=14% Similarity=0.097 Sum_probs=115.3
Q ss_pred eccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecc-ccceEEEEEecCCCCeEEEEeCCCeEEEEeCC
Q 021121 102 LHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEH-AYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180 (317)
Q Consensus 102 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 180 (317)
+.+-...+..++|+|+...++++....+.|..++.+ |+.++.+.-. .+....+++..+ +.++++.-.++.+.++++.
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~-~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGN-GRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-ST-TEEEEEETTTTEEEEEEE-
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECC-CEEEEEEcCCCcEEEEEEe
Confidence 344455699999999877688888889999999974 7777776533 355788888765 5555555568999999884
Q ss_pred CCCc---e---eeec-----cCccceEEEEecCCCCcEEEEEecCCcEEEEEccC--CCccEEE--E------ecCCCce
Q 021121 181 EMGS---T---MIIP-----AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRN--YRVPIAV--L------NGHGYAV 239 (317)
Q Consensus 181 ~~~~---~---~~~~-----~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~--~~~~~~~--~------~~~~~~v 239 (317)
.... . ..+. .++..+-.++|+| ..+.|+.+-+..-..+|.++. ....+.. . ...-..+
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 3211 1 1111 2345688999999 555555566666677777764 1111111 1 1123457
Q ss_pred eEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeeccc---------ceeEeEEEEeccCCeEEEeecCCcEEEE
Q 021121 240 RKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHT---------EFAVGVDMSVLVEGLLASTGWDELVYVW 308 (317)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~l~s~~~dg~i~~w 308 (317)
.+++++|...++++-...+..|..+| .+++ ++..+.-.. ...-+|+|.++ +. |+..+.-+..++|
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~-~~~~~~L~~g~~gl~~~~~QpEGIa~d~~-G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGR-VVSSLSLDRGFHGLSKDIPQPEGIAFDPD-GN-LYIVSEPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT---EEEEEE-STTGGG-SS---SEEEEEE-TT----EEEEETTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCC-EEEEEEeCCcccCcccccCCccEEEECCC-CC-EEEEcCCceEEEe
Confidence 89999999888888888889999999 4444 333322111 24678999997 54 4445566665554
No 341
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.49 E-value=0.00028 Score=58.94 Aligned_cols=234 Identities=12% Similarity=0.127 Sum_probs=125.1
Q ss_pred cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCc-------------------------------------
Q 021121 8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPA------------------------------------- 50 (317)
Q Consensus 8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~------------------------------------- 50 (317)
-.|..++|++. ...++++.. +|.|.||.+...+..
T Consensus 2 ~~v~~vs~a~~-t~Elav~~~-------~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~ 73 (395)
T PF08596_consen 2 VSVTHVSFAPE-TLELAVGLE-------SGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLK 73 (395)
T ss_dssp --EEEEEEETT-TTEEEEEET-------TS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-S
T ss_pred ceEEEEEecCC-CceEEEEcc-------CCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccc
Confidence 36889999995 577777776 788888877432100
Q ss_pred --ceeeeee-cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCcee--ec------cCCcceEEEEEec---
Q 021121 51 --LTELVAF-DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRS--LH------EHTREVHSADYNP--- 116 (317)
Q Consensus 51 --~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~--~~------~~~~~v~~~~~~~--- 116 (317)
+.+.... ...++|++++.+.-| ++|.|..+|.+.|.|++.+ ..+.. +. .....++++.|.-
T Consensus 74 ~gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGP---avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~ 148 (395)
T PF08596_consen 74 EGFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGP---AVIYNENIRESFLSKSSSSYVTSIEFSVMTL 148 (395)
T ss_dssp EEEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTT---EEEEEEEGGG--T-SS----EEEEEEEEEE-
T ss_pred cccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCC---eEEeeccccccccccccccCeeEEEEEEEec
Confidence 0111111 135789999998665 9999999999999999754 22221 11 2345688888862
Q ss_pred --CC--CCEEEEEcCCCEEEEEEcCC---Ccee----EEeeccccceEEEE-EecCC-------------------CCeE
Q 021121 117 --TR--RDSFITSSWDDTVKLWTVDR---PTSV----RTFKEHAYCVYNAT-WNPRH-------------------SDVF 165 (317)
Q Consensus 117 --~~--~~~l~~~~~dg~v~iwd~~~---~~~~----~~~~~~~~~v~~~~-~~~~~-------------------~~~l 165 (317)
|+ .-.+++|...|.+.+|.+.- +... .....+.+++..+. ++.+. -+-+
T Consensus 149 ~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~ 228 (395)
T PF08596_consen 149 GGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGY 228 (395)
T ss_dssp TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE
T ss_pred CCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE
Confidence 21 12788999999999997741 1111 11123455666555 32220 1123
Q ss_pred EEEeCCCeEEEEeCCCCCceeeeccCccceEEEEec----CCCCcEEEEEecCCcEEEEEccCCCccEEEEecC----CC
Q 021121 166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWN----KYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH----GY 237 (317)
Q Consensus 166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~----~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~----~~ 237 (317)
+....+..++++..-+.+..............+.+- ...+..|++-..+|.|++|.+...+. +...... ..
T Consensus 229 vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke-i~~~~l~~~~d~~ 307 (395)
T PF08596_consen 229 VVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE-IKSVSLPPPLDSR 307 (395)
T ss_dssp EEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E-EEEEE-SS---HH
T ss_pred EEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH-hhcccCCCccccc
Confidence 344456789999988776655544222233334442 11566788888999999999998775 4443332 12
Q ss_pred ceeEEEecCCCCeeEEeee
Q 021121 238 AVRKVKFSPHRRNLLASCS 256 (317)
Q Consensus 238 ~v~~~~~~~~~~~~l~~~~ 256 (317)
.+....++++|. +++-.+
T Consensus 308 ~~~~ssis~~Gd-i~~~~g 325 (395)
T PF08596_consen 308 RLSSSSISRNGD-IFYWTG 325 (395)
T ss_dssp HHTT-EE-TTS--EEEE-S
T ss_pred cccccEECCCCC-EEEEeC
Confidence 455677888888 454443
No 342
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.47 E-value=0.00017 Score=61.07 Aligned_cols=223 Identities=13% Similarity=0.173 Sum_probs=117.3
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
....+..++++| .+++++.++ +|.-.||..... .... .+.-....|.+.+ .+|+-...+.|
T Consensus 31 ~~~~p~~ls~np--ngr~v~V~g-------~geY~iyt~~~~----r~k~----~G~g~~~vw~~~n--~yAv~~~~~~I 91 (443)
T PF04053_consen 31 CEIYPQSLSHNP--NGRFVLVCG-------DGEYEIYTALAW----RNKA----FGSGLSFVWSSRN--RYAVLESSSTI 91 (443)
T ss_dssp -SS--SEEEE-T--TSSEEEEEE-------TTEEEEEETTTT----EEEE----EEE-SEEEE-TSS--EEEEE-TTS-E
T ss_pred CCcCCeeEEECC--CCCEEEEEc-------CCEEEEEEccCC----cccc----cCceeEEEEecCc--cEEEEECCCeE
Confidence 344578999999 677777766 889999983322 1221 1234567899854 67777778899
Q ss_pred EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121 86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF 165 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 165 (317)
.++.--.. .....++. ...+..+-. |. +|+..+ ++.|.+||+++++.++.+... +|..+.|+++ +.++
T Consensus 92 ~I~kn~~~---~~~k~i~~-~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~-g~~v 159 (443)
T PF04053_consen 92 KIYKNFKN---EVVKSIKL-PFSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDD-GELV 159 (443)
T ss_dssp EEEETTEE----TT------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TT-SSEE
T ss_pred EEEEcCcc---ccceEEcC-CcccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECC-CCEE
Confidence 99742211 22122221 112333322 65 555555 458999999999999998743 3899999998 7888
Q ss_pred EEEeCCCeEEEEeCCCC-----------CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec
Q 021121 166 CSASGDCTLRIWDVREM-----------GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG 234 (317)
Q Consensus 166 ~~~~~dg~i~i~d~~~~-----------~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 234 (317)
+..+.+ .+.+++.... .....+......|.+..|.. + .++-.+.. .++. +..++ ...+..
T Consensus 160 al~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~-d--~fiYtT~~-~lkY--l~~Ge--~~~i~~ 230 (443)
T PF04053_consen 160 ALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVE-D--CFIYTTSN-HLKY--LVNGE--TGIIAH 230 (443)
T ss_dssp EEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEET-T--EEEEE-TT-EEEE--EETTE--EEEEEE
T ss_pred EEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEc-C--EEEEEcCC-eEEE--EEcCC--cceEEE
Confidence 777755 5677664322 02333332256788888975 4 44444434 6666 44443 233333
Q ss_pred CCCceeEEEecCCCCeeEEeeecCCeEEEEecccc
Q 021121 235 HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE 269 (317)
Q Consensus 235 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~ 269 (317)
-..++.=+.+.|... .+.....|+.+..+.+...
T Consensus 231 ld~~~yllgy~~~~~-~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 231 LDKPLYLLGYLPKEN-RLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp -SS--EEEEEETTTT-EEEEE-TT--EEEEE--HH
T ss_pred cCCceEEEEEEccCC-EEEEEECCCCEEEEEECHH
Confidence 345677778888665 4777888888888876543
No 343
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.41 E-value=0.00033 Score=57.52 Aligned_cols=213 Identities=12% Similarity=0.067 Sum_probs=118.3
Q ss_pred eEEEEEeCCCCCCCCceeec-cCCcceEEEEE---ecC---CCCEEEEEcC----------CCEEEEEEcCCC----cee
Q 021121 84 SVKIYDTALPPTANPIRSLH-EHTREVHSADY---NPT---RRDSFITSSW----------DDTVKLWTVDRP----TSV 142 (317)
Q Consensus 84 ~i~v~~~~~~~~~~~~~~~~-~~~~~v~~~~~---~~~---~~~~l~~~~~----------dg~v~iwd~~~~----~~~ 142 (317)
.|++.|..+. +.+..+. ...+.+.+++. ..+ ...++++|.. .|.|.++++.+. ..+
T Consensus 3 ~i~l~d~~~~---~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l 79 (321)
T PF03178_consen 3 SIRLVDPTTF---EVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL 79 (321)
T ss_dssp EEEEEETTTS---SEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred EEEEEeCCCC---eEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence 4677775543 3333322 12334444433 222 1336776643 299999999884 222
Q ss_pred EEe--eccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccC--ccceEEEEecCCCCcEEEEEecCCcEE
Q 021121 143 RTF--KEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAH--EFEILACDWNKYDDCLIASASVDKSIK 218 (317)
Q Consensus 143 ~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~v~~i~~~~~~~~~l~~~~~d~~i~ 218 (317)
..+ ...+++|++++-.. +. ++++ .++.|.+|++...+.+.....+ ...+.++... +++++.|.....+.
T Consensus 80 ~~i~~~~~~g~V~ai~~~~--~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~ 152 (321)
T PF03178_consen 80 KLIHSTEVKGPVTAICSFN--GR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVS 152 (321)
T ss_dssp EEEEEEEESS-EEEEEEET--TE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEE
T ss_pred EEEEEEeecCcceEhhhhC--CE-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEE
Confidence 222 23567899988762 44 4333 3578999999887723322222 2355566554 45889998888888
Q ss_pred EEEccCCCccEEEE--ecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccc-------c-ceeee-eecccceeEeE-
Q 021121 219 IWDVRNYRVPIAVL--NGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE-------D-ALVGR-YDHHTEFAVGV- 286 (317)
Q Consensus 219 v~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~-------~-~~~~~-~~~~~~~v~~~- 286 (317)
++..+.....+..+ ......++++.|-+++. .++.+..+|.+.++..... . .+... .......|+++
T Consensus 153 ~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~ 231 (321)
T PF03178_consen 153 LLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFR 231 (321)
T ss_dssp EEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEE
T ss_pred EEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEE
Confidence 88665422212222 23456788999987776 6889999999999987632 1 11111 11234567777
Q ss_pred --EEEe--ccCC-----eEEEeecCCcEEE
Q 021121 287 --DMSV--LVEG-----LLASTGWDELVYV 307 (317)
Q Consensus 287 --~~~~--~~~~-----~l~s~~~dg~i~~ 307 (317)
++.| .... .++-++.+|.|..
T Consensus 232 ~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 232 RGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp E--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred EEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 4444 1122 3777778898873
No 344
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.41 E-value=1.3e-05 Score=68.59 Aligned_cols=155 Identities=12% Similarity=0.112 Sum_probs=101.0
Q ss_pred CCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc
Q 021121 61 DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT 140 (317)
Q Consensus 61 ~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 140 (317)
..|.--++...+ .+++.|+..|.+.+|+-..+. .......+..+.+..+..+++.. +++.|+..|.|.++-++...
T Consensus 34 ~~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~~--~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 34 ARVKLTCVDATE-EYLAMGSSAGSVYLYNRHTGE--MRKLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred ceEEEEEeecCC-ceEEEecccceEEEEecCchh--hhcccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhccC
Confidence 334444555555 599999999999999966541 11112222344555666777766 88999999999999887643
Q ss_pred eeEEe------eccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC----CceeeeccCccceEEEEecCCCCcEEEE
Q 021121 141 SVRTF------KEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM----GSTMIIPAHEFEILACDWNKYDDCLIAS 210 (317)
Q Consensus 141 ~~~~~------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~l~~ 210 (317)
..... +.|+..|++++|+++ +..+++|...|+|..-.+... -..+.+....+.|..+.+. .+.+|++
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~-~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVS 186 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKN-GMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVS 186 (726)
T ss_pred CCcceeeccccccCCceEEEEEeccc-ccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHh
Confidence 21111 236789999999999 888999999999998887762 1222333456677777765 3444444
Q ss_pred EecCCcEEEEEccC
Q 021121 211 ASVDKSIKIWDVRN 224 (317)
Q Consensus 211 ~~~d~~i~v~d~~~ 224 (317)
.. -. -.+++.+.
T Consensus 187 tl-~r-~~Lc~tE~ 198 (726)
T KOG3621|consen 187 TL-TR-CILCQTEA 198 (726)
T ss_pred hh-hh-hheeecch
Confidence 33 22 33555443
No 345
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.40 E-value=0.00067 Score=55.70 Aligned_cols=217 Identities=8% Similarity=0.111 Sum_probs=123.5
Q ss_pred eEEEEecCCCCCcceeeeeecCCCCeeEEEecC---C---CCCeEEEEEc---------C-CeEEEEEeCCC-CCCCCce
Q 021121 38 RVHVLDLSPAAPALTELVAFDTADGVYDLAWSE---S---HDSLLIAAVA---------D-GSVKIYDTALP-PTANPIR 100 (317)
Q Consensus 38 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~---~~~~l~~~~~---------d-g~i~v~~~~~~-~~~~~~~ 100 (317)
.|++.|..+... . ....+...+.+.+++... + ...++++|+. . |.|.++++... .....+.
T Consensus 3 ~i~l~d~~~~~~-~-~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 3 SIRLVDPTTFEV-L-DSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp EEEEEETTTSSE-E-EEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred EEEEEeCCCCeE-E-EEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 677887765541 2 233334555566555432 2 1357887765 2 89999999863 1111222
Q ss_pred e--eccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc-eeEEeec-cccceEEEEEecCCCCeEEEEeCCCeEEE
Q 021121 101 S--LHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT-SVRTFKE-HAYCVYNATWNPRHSDVFCSASGDCTLRI 176 (317)
Q Consensus 101 ~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 176 (317)
. .....++|++++-. +. .++++. .+.|.+|++...+ ....-.. ....+.++... ++++++|.....+.+
T Consensus 81 ~i~~~~~~g~V~ai~~~--~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSF--NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSL 153 (321)
T ss_dssp EEEEEEESS-EEEEEEE--TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEE
T ss_pred EEEEEeecCcceEhhhh--CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEE
Confidence 1 22457889998876 23 444444 4799999999887 3333221 23356666665 568889988888888
Q ss_pred EeCCCC-Cceeeec--cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCC------Cc-cEEE--EecCCCceeEE--
Q 021121 177 WDVREM-GSTMIIP--AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNY------RV-PIAV--LNGHGYAVRKV-- 242 (317)
Q Consensus 177 ~d~~~~-~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~------~~-~~~~--~~~~~~~v~~~-- 242 (317)
+..+.. ..+..+. .....++++.+-+ +++.++.+..+|.+.++..... .. .+.. .-..+..|+++
T Consensus 154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~ 232 (321)
T PF03178_consen 154 LRYDEENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRR 232 (321)
T ss_dssp EEEETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE
T ss_pred EEEEccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEE
Confidence 755442 2222222 2345588888886 4468999999999999987631 11 1211 11234567777
Q ss_pred -EecC--CCCe-----eEEeeecCCeEEEE
Q 021121 243 -KFSP--HRRN-----LLASCSYDMTVCLW 264 (317)
Q Consensus 243 -~~~~--~~~~-----~l~~~~~d~~i~vw 264 (317)
.+.| .+.. .++.++.+|.|-+.
T Consensus 233 ~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 233 GSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp --SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 5555 2221 36777788888844
No 346
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.40 E-value=0.00095 Score=56.97 Aligned_cols=242 Identities=13% Similarity=0.093 Sum_probs=129.2
Q ss_pred eeEEEecCCCCCeEEEEEcCC----eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcC----------C
Q 021121 63 VYDLAWSESHDSLLIAAVADG----SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW----------D 128 (317)
Q Consensus 63 v~~~~~~~~~~~~l~~~~~dg----~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----------d 128 (317)
+....++|+++.++++-+..| .++++|++++ +.+...- .......+.|.+++..++.+... .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg---~~l~d~i-~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG---KFLPDGI-ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT---EEEEEEE-EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC---cCcCCcc-cccccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 346788999964444545555 4999999876 3332211 11122349999998845555532 3
Q ss_pred CEEEEEEcCCCcee--EEeeccccc--eEEEEEecCCCCeEEE-EeCC---CeEEEEeCCCC----CceeeeccCccce-
Q 021121 129 DTVKLWTVDRPTSV--RTFKEHAYC--VYNATWNPRHSDVFCS-ASGD---CTLRIWDVREM----GSTMIIPAHEFEI- 195 (317)
Q Consensus 129 g~v~iwd~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~~l~~-~~~d---g~i~i~d~~~~----~~~~~~~~~~~~v- 195 (317)
..|+.|.+.+.... ..+...... ...+..+++ +++++. .... ..+.+.|+... .....+......+
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d-~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~ 280 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKD-GRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE 280 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TT-SSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCc-ccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence 34888888776433 344433332 567888988 555443 3332 35888888874 2333333333333
Q ss_pred EEEEecCCCCcEEEEEe---cCCcEEEEEccCCCc--cEEEEecCCC--ceeEEEecCCCCeeEEeeecCCe--EEEEec
Q 021121 196 LACDWNKYDDCLIASAS---VDKSIKIWDVRNYRV--PIAVLNGHGY--AVRKVKFSPHRRNLLASCSYDMT--VCLWDF 266 (317)
Q Consensus 196 ~~i~~~~~~~~~l~~~~---~d~~i~v~d~~~~~~--~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~d~~--i~vwd~ 266 (317)
..+... .+.+++... ..+.|...++..... ....+..+.. .+..+.. .+.++++....++. |+++++
T Consensus 281 ~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~ 356 (414)
T PF02897_consen 281 YYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDL 356 (414)
T ss_dssp EEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEET
T ss_pred EEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEEC
Confidence 333333 444444433 235677777777652 1224555555 3444444 45557777777764 788888
Q ss_pred c-cccceeeeeecccceeEeEEEEeccCCeEEEee---cCCcEEEEecCCCC
Q 021121 267 M-VEDALVGRYDHHTEFAVGVDMSVLVEGLLASTG---WDELVYVWQQGMDP 314 (317)
Q Consensus 267 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~dg~i~~w~~~~~~ 314 (317)
. ... .......-.+.|..+...++...+.++.+ .-+.+..||+.++.
T Consensus 357 ~~~~~-~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 357 DDGKE-SREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp T-TEE-EEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred CCCcE-EeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 8 433 22222223445666665555344444444 24677777777654
No 347
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.39 E-value=0.00037 Score=57.96 Aligned_cols=224 Identities=13% Similarity=0.127 Sum_probs=121.6
Q ss_pred CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEe-ec-------c-----
Q 021121 82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTF-KE-------H----- 148 (317)
Q Consensus 82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~-------~----- 148 (317)
.+.+.+||++++ ....+......+....|+|+|+ .++-.. ++.|.+++..+++..+.- .+ -
T Consensus 22 ~~~y~i~d~~~~----~~~~l~~~~~~~~~~~~sP~g~-~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvy 95 (353)
T PF00930_consen 22 KGDYYIYDIETG----EITPLTPPPPKLQDAKWSPDGK-YIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVY 95 (353)
T ss_dssp EEEEEEEETTTT----EEEESS-EETTBSEEEE-SSST-EEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHH
T ss_pred ceeEEEEecCCC----ceEECcCCccccccceeecCCC-eeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceec
Confidence 367889998864 2222222256788899999998 666555 578999998776333211 11 0
Q ss_pred ----ccceEEEEEecCCCCeEEEEe-CCCe-----------------------------------EEEEeCCCCCcee-e
Q 021121 149 ----AYCVYNATWNPRHSDVFCSAS-GDCT-----------------------------------LRIWDVREMGSTM-I 187 (317)
Q Consensus 149 ----~~~v~~~~~~~~~~~~l~~~~-~dg~-----------------------------------i~i~d~~~~~~~~-~ 187 (317)
-+.-..+.|+|+ ++.|+... ++.. +.++|+.+++... .
T Consensus 96 eEEv~~~~~~~~WSpd-~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~ 174 (353)
T PF00930_consen 96 EEEVFDRRSAVWWSPD-SKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELD 174 (353)
T ss_dssp HHHTSSSSBSEEE-TT-SSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE-
T ss_pred cccccccccceEECCC-CCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEee
Confidence 112356889999 55555332 2222 3345554444321 1
Q ss_pred e----ccCccceEEEEecCCCCcEEEEE--ecCC---cEEEEEccCCCccEEEEecCCCce---eEEEec-CCCCeeEEe
Q 021121 188 I----PAHEFEILACDWNKYDDCLIASA--SVDK---SIKIWDVRNYRVPIAVLNGHGYAV---RKVKFS-PHRRNLLAS 254 (317)
Q Consensus 188 ~----~~~~~~v~~i~~~~~~~~~l~~~--~~d~---~i~v~d~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~~l~~ 254 (317)
. ......+..+.|.+ ++..++.. ..+. .+.++|..++.............| ....|. +++..+|..
T Consensus 175 ~~~~~~~~~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~ 253 (353)
T PF00930_consen 175 PPNSLNPQDYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWI 253 (353)
T ss_dssp --HHHHTSSEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEE
T ss_pred eccccCCCccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEE
Confidence 1 12344578889988 66633332 2222 467778877654333333333333 355665 777777777
Q ss_pred eecCCeEEEEecccccceeeeeecccceeEe-EEEEeccCCeEEEeecC--CcEEEEecCCC
Q 021121 255 CSYDMTVCLWDFMVEDALVGRYDHHTEFAVG-VDMSVLVEGLLASTGWD--ELVYVWQQGMD 313 (317)
Q Consensus 255 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~~~d--g~i~~w~~~~~ 313 (317)
...+|.-+|+-+.........+....-.|.. +.++++++.+..++..+ +.-.+|.++.+
T Consensus 254 s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 254 SERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp EETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred EEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 7788876666554443333444444555644 67777755555566542 35555655443
No 348
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.37 E-value=0.001 Score=56.36 Aligned_cols=190 Identities=10% Similarity=0.110 Sum_probs=99.6
Q ss_pred eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEe-------eccccceEEEE
Q 021121 84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTF-------KEHAYCVYNAT 156 (317)
Q Consensus 84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-------~~~~~~v~~~~ 156 (317)
.|++|+... +.+..+.-..+.+.++.|..+. .|+....||.++++|+... ....+ .-....+....
T Consensus 62 ~I~iys~sG----~ll~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G~-~~fsl~~~i~~~~v~e~~i~~~~ 134 (410)
T PF04841_consen 62 SIQIYSSSG----KLLSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDLFGE-FQFSLGEEIEEEKVLECRIFAIW 134 (410)
T ss_pred EEEEECCCC----CEeEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeCCCc-eeechhhhccccCcccccccccc
Confidence 488888653 4455444334899999998864 4677778999999998633 31111 11111222222
Q ss_pred EecCCCCeEEEEeCCCeEEEEeCCCCC-ceeeec---cCcc------ceEE-EEecCCCCcEEEEEecCCcEEEEEccCC
Q 021121 157 WNPRHSDVFCSASGDCTLRIWDVREMG-STMIIP---AHEF------EILA-CDWNKYDDCLIASASVDKSIKIWDVRNY 225 (317)
Q Consensus 157 ~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~---~~~~------~v~~-i~~~~~~~~~l~~~~~d~~i~v~d~~~~ 225 (317)
+... | ++.-..++.+.+..--... ..+.+. .... .... ..++. +....+....++.+.+.+....
T Consensus 135 ~~~~-G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~~~ 210 (410)
T PF04841_consen 135 FYKN-G--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGETIYIIDENSF 210 (410)
T ss_pred cCCC-C--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec-CcceEEEEecCCEEEEEEcccc
Confidence 2222 3 3333445555444322211 111111 1000 0000 12232 3333444444455554443321
Q ss_pred CccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeec-ccceeEeEEEEec
Q 021121 226 RVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH-HTEFAVGVDMSVL 291 (317)
Q Consensus 226 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~ 291 (317)
+ .+. ..+++..|+.||+++ ++|.-..+|.+.+....-.+ ....+.- .......|.|+.+
T Consensus 211 ~----~i~-~~~~i~~iavSpng~-~iAl~t~~g~l~v~ssDf~~-~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 211 K----QID-SDGPIIKIAVSPNGK-FIALFTDSGNLWVVSSDFSE-KLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred c----ccc-CCCCeEEEEECCCCC-EEEEEECCCCEEEEECcccc-eeEEeecCcCCCCcEEEEECC
Confidence 1 121 235899999999999 68888889999888765544 3333332 2445677888864
No 349
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=0.00064 Score=57.06 Aligned_cols=202 Identities=14% Similarity=0.095 Sum_probs=133.8
Q ss_pred CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEc--CCCEEEEEEcCCC
Q 021121 62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSS--WDDTVKLWTVDRP 139 (317)
Q Consensus 62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~v~iwd~~~~ 139 (317)
.-..++.++.+.+..+....++.|.+.|.... ........ ......++++++++...++-. .++.+.+.|..+.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~---~~~~~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~ 150 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATN---TVLGSIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN 150 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCccc---ceeeEeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC
Confidence 34567888888667777777789999996554 33322221 225677899999984555545 3799999999999
Q ss_pred ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCcee-----eeccCccceEEEEecCCCCcEEEEEecC
Q 021121 140 TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM-----IIPAHEFEILACDWNKYDDCLIASASVD 214 (317)
Q Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~v~~i~~~~~~~~~l~~~~~d 214 (317)
+..........+ ..+++.|++....++-..++.|.+.|.+...... ... .......+.++| ++..+......
T Consensus 151 ~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~~P~~i~v~~-~g~~~yV~~~~ 227 (381)
T COG3391 151 KVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGTGPAGIAVDP-DGNRVYVANDG 227 (381)
T ss_pred eEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cCCCCceEEECC-CCCEEEEEecc
Confidence 888875544444 9999999955466666689999999977654442 122 222346788898 77655444333
Q ss_pred ---CcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121 215 ---KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED 270 (317)
Q Consensus 215 ---~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~ 270 (317)
+.+...|..+.................+..+|++..+.+.-+..+.+.+-|..+..
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred CCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 58888888876532221221111456789999999544443555889998887765
No 350
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.34 E-value=0.0009 Score=53.90 Aligned_cols=210 Identities=13% Similarity=0.130 Sum_probs=118.9
Q ss_pred CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeec-c-CCcceEEEE
Q 021121 36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLH-E-HTREVHSAD 113 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-~-~~~~v~~~~ 113 (317)
.++|.-|+..... ...+..+..+.++..-..+ ..|+++ ..| +.+++.+.+.....+.... + ....-+.+.
T Consensus 46 ~~~i~r~~~~~g~-----~~~~~~p~~~~~~~~~d~~-g~Lv~~-~~g-~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~ 117 (307)
T COG3386 46 GGRIHRLDPETGK-----KRVFPSPGGFSSGALIDAG-GRLIAC-EHG-VRLLDPDTGGKITLLAEPEDGLPLNRPNDGV 117 (307)
T ss_pred CCeEEEecCCcCc-----eEEEECCCCcccceeecCC-CeEEEE-ccc-cEEEeccCCceeEEeccccCCCCcCCCCcee
Confidence 6677777776443 3334555566666555444 245444 334 6677765432211111111 1 124566788
Q ss_pred EecCCCCEEEEEcC-----------CCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCC-
Q 021121 114 YNPTRRDSFITSSW-----------DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE- 181 (317)
Q Consensus 114 ~~~~~~~~l~~~~~-----------dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~- 181 (317)
..|+|. +.++... -|.|+.+|. .+...+.+..+-...+.|+|+|++..++++=+..+.|.-|++..
T Consensus 118 v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~ 195 (307)
T COG3386 118 VDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPA 195 (307)
T ss_pred EcCCCC-EEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcc
Confidence 889987 4333322 144555554 45666666655666789999999445555555568888888762
Q ss_pred -C---Cc--eeeeccCccceEEEEecCCCCcEEEEEecCC-cEEEEEccCCCccEEEEecCCCceeEEEec-CCCCeeEE
Q 021121 182 -M---GS--TMIIPAHEFEILACDWNKYDDCLIASASVDK-SIKIWDVRNYRVPIAVLNGHGYAVRKVKFS-PHRRNLLA 253 (317)
Q Consensus 182 -~---~~--~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~ 253 (317)
+ .. ...........-.++... ++++.+++..+| .|.+|+.. ++. +..+.-....+++++|- |+.+.+++
T Consensus 196 ~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~pd-G~l-~~~i~lP~~~~t~~~FgG~~~~~L~i 272 (307)
T COG3386 196 TGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFNPD-GKL-LGEIKLPVKRPTNPAFGGPDLNTLYI 272 (307)
T ss_pred cCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEEECCC-CcE-EEEEECCCCCCccceEeCCCcCEEEE
Confidence 1 11 111122233445566666 777775555444 89999988 453 55555554677888885 34455566
Q ss_pred eeecC
Q 021121 254 SCSYD 258 (317)
Q Consensus 254 ~~~~d 258 (317)
++...
T Consensus 273 Ts~~~ 277 (307)
T COG3386 273 TSARS 277 (307)
T ss_pred EecCC
Confidence 65544
No 351
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.32 E-value=0.00056 Score=52.05 Aligned_cols=143 Identities=12% Similarity=-0.013 Sum_probs=96.9
Q ss_pred EecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCcc
Q 021121 114 YNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEF 193 (317)
Q Consensus 114 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 193 (317)
..++.+.+++.|+..+.+.--|..+|+.+.+-. -..++.+-+.- - ++.++.|...|.+++.+.++++....+...+.
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-v-gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-V-GDFVVLGCYSGGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-E-CCEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence 345555689999999999999999998766543 23334443333 2 67799999999999999999988777764433
Q ss_pred ceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEE
Q 021121 194 EILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVC 262 (317)
Q Consensus 194 ~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 262 (317)
--......+ ++.++..|+.|+..+..|.++... +...+...+...+-+..|.... |..+...|.+.
T Consensus 95 vk~~a~~d~-~~glIycgshd~~~yalD~~~~~c-VykskcgG~~f~sP~i~~g~~s-ly~a~t~G~vl 160 (354)
T KOG4649|consen 95 VKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGC-VYKSKCGGGTFVSPVIAPGDGS-LYAAITAGAVL 160 (354)
T ss_pred hccceEEcC-CCceEEEecCCCcEEEecccccce-EEecccCCceeccceecCCCce-EEEEeccceEE
Confidence 222334455 889999999999999999998654 6665544444445555662222 33344445443
No 352
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.24 E-value=0.0027 Score=55.33 Aligned_cols=151 Identities=9% Similarity=0.060 Sum_probs=88.0
Q ss_pred EEecCCCCEEEEEcCCC------------------EEEEEEcCCCceeEEeeccccceE------EEEEec---CCC---
Q 021121 113 DYNPTRRDSFITSSWDD------------------TVKLWTVDRPTSVRTFKEHAYCVY------NATWNP---RHS--- 162 (317)
Q Consensus 113 ~~~~~~~~~l~~~~~dg------------------~v~iwd~~~~~~~~~~~~~~~~v~------~~~~~~---~~~--- 162 (317)
.+.+.+. .++.++.++ .|.-+|+++++....++....... ...+.+ .++
T Consensus 223 a~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~ 301 (488)
T cd00216 223 TYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPV 301 (488)
T ss_pred eEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCee
Confidence 3444444 677776665 799999999998887653211111 011110 112
Q ss_pred CeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEE------------------ecCCcEEEEEccC
Q 021121 163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASA------------------SVDKSIKIWDVRN 224 (317)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~------------------~~d~~i~v~d~~~ 224 (317)
..++.++.+|.+...|.++++.+-..... ...++.+| ..+..+ ..+|.+.-.|+.+
T Consensus 302 ~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t 375 (488)
T cd00216 302 PAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT 375 (488)
T ss_pred EEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC
Confidence 25778889999999999999887765421 11123333 222221 2356788888887
Q ss_pred CCccEEEEecC--C------Cce--eEEEecCCCCeeEEeeecCCeEEEEecccccceee
Q 021121 225 YRVPIAVLNGH--G------YAV--RKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVG 274 (317)
Q Consensus 225 ~~~~~~~~~~~--~------~~v--~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 274 (317)
++. +-..... . .+. ..+.. .+. +++.++.||.++.+|..+++.+-.
T Consensus 376 G~~-~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~-~v~~g~~dG~l~ald~~tG~~lW~ 431 (488)
T cd00216 376 GKV-VWEKREGTIRDSWNIGFPHWGGSLAT--AGN-LVFAGAADGYFRAFDATTGKELWK 431 (488)
T ss_pred CcE-eeEeeCCccccccccCCcccCcceEe--cCC-eEEEECCCCeEEEEECCCCceeeE
Confidence 764 3222211 0 111 11222 334 688888999999999999985433
No 353
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=0.0021 Score=53.96 Aligned_cols=242 Identities=14% Similarity=0.144 Sum_probs=151.2
Q ss_pred CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCcee-eccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc
Q 021121 62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRS-LHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT 140 (317)
Q Consensus 62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 140 (317)
....+...+++....++-.....+...+.. . ..... ...-...-..++.++.+...++....+..|.+.|..+.+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~---n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~ 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-S---NTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-c---ceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccc
Confidence 556677888875444444333344444433 1 11111 111113345678888888666676677999999988777
Q ss_pred eeEEeeccccceEEEEEecCCCCeEEEEe--CCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcE-EEEEecCCcE
Q 021121 141 SVRTFKEHAYCVYNATWNPRHSDVFCSAS--GDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCL-IASASVDKSI 217 (317)
Q Consensus 141 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-l~~~~~d~~i 217 (317)
......... ....++++|++..+.++-. .++.+.+.|..+.+.......-..+ ..++++| +++. +++-..++.|
T Consensus 108 ~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p-~g~~vyv~~~~~~~v 184 (381)
T COG3391 108 VLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP-DGNKVYVTNSDDNTV 184 (381)
T ss_pred eeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC-CCCeEEEEecCCCeE
Confidence 766665333 6789999999545555555 3789999999988887775544444 8899999 7774 4444578899
Q ss_pred EEEEccCCCccEE-----EEecCCCceeEEEecCCCCeeEEeeecC--CeEEEEecccccceeeeeecccceeEeEEEEe
Q 021121 218 KIWDVRNYRVPIA-----VLNGHGYAVRKVKFSPHRRNLLASCSYD--MTVCLWDFMVEDALVGRYDHHTEFAVGVDMSV 290 (317)
Q Consensus 218 ~v~d~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 290 (317)
.++|...... .. ... -......+.++|++.++.++-..+ +.+...|..++................+..+|
T Consensus 185 ~vi~~~~~~v-~~~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p 262 (381)
T COG3391 185 SVIDTSGNSV-VRGSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDP 262 (381)
T ss_pred EEEeCCCcce-eccccccccc-cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECC
Confidence 9999766432 21 111 222346789999999644444444 58888888877632221111111456788899
Q ss_pred ccCCeEEEe-ecCCcEEEEecCCC
Q 021121 291 LVEGLLAST-GWDELVYVWQQGMD 313 (317)
Q Consensus 291 ~~~~~l~s~-~~dg~i~~w~~~~~ 313 (317)
+ +..+... +..+.+.+-|....
T Consensus 263 ~-g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 263 A-GKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred C-CCEEEEEecCCCeEEEEeCCCC
Confidence 8 5555544 44577777776553
No 354
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.23 E-value=0.00015 Score=62.80 Aligned_cols=104 Identities=11% Similarity=0.067 Sum_probs=74.5
Q ss_pred ecCCCCEEEEEcCCCEEEEEEcCC-----CceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc-----
Q 021121 115 NPTRRDSFITSSWDDTVKLWTVDR-----PTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS----- 184 (317)
Q Consensus 115 ~~~~~~~l~~~~~dg~v~iwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----- 184 (317)
.++|+ +... .++.|.+.|..+ .+.+..+. -...+..+.++|++..+++++..+.++.+.|+++.+.
T Consensus 285 vkdGK-~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 285 VKAGK-FKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhCCC-EEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 45666 4444 357899999988 34444444 4566899999999555566666799999999987653
Q ss_pred -------eeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccC
Q 021121 185 -------TMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRN 224 (317)
Q Consensus 185 -------~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~ 224 (317)
...... .......+|.+ +++.+.+-.-|..|..||+..
T Consensus 361 ~~~~~~vvaevev-GlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPEL-GLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeecc-CCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 222222 23345778988 888888888999999999875
No 355
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=8.6e-05 Score=61.86 Aligned_cols=146 Identities=16% Similarity=0.214 Sum_probs=101.7
Q ss_pred cCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCC------CeEEEEeCCCeEEEEeCCCCCc--eee
Q 021121 116 PTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS------DVFCSASGDCTLRIWDVREMGS--TMI 187 (317)
Q Consensus 116 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~l~~~~~dg~i~i~d~~~~~~--~~~ 187 (317)
.+.+.++.++.....++-.|++.|+.+..+.-+.. |+-+.+.|+.. ..-+.|-.+..|.-||+|-... +..
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 34443556666777899999999999999886666 77777777521 1123567788899999984332 111
Q ss_pred eccC----ccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEE
Q 021121 188 IPAH----EFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCL 263 (317)
Q Consensus 188 ~~~~----~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~v 263 (317)
.+.| .....|.+-. ...++++|+.+|.|++||- .+......+++.+.+|..+..+.+|+.+|+|+ +..+.+
T Consensus 422 ~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlL 496 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLL 496 (644)
T ss_pred eeccccccccccceeeec--CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEE
Confidence 1111 2234566555 4458999999999999997 55555677888999999999999999655444 566777
Q ss_pred Eecc
Q 021121 264 WDFM 267 (317)
Q Consensus 264 wd~~ 267 (317)
-++.
T Consensus 497 i~t~ 500 (644)
T KOG2395|consen 497 IDTL 500 (644)
T ss_pred EEEe
Confidence 6654
No 356
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.1e-05 Score=68.18 Aligned_cols=95 Identities=20% Similarity=0.150 Sum_probs=79.1
Q ss_pred ccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCcee-EEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121 192 EFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVR-KVKFSPHRRNLLASCSYDMTVCLWDFMVED 270 (317)
Q Consensus 192 ~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~ 270 (317)
...+.-+.|+| .-.++|.+..+|.+.+..+. .+ .+..+.-++..++ +++|.|||+ +|+.|-.||+|++-|+.++.
T Consensus 20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~q-Rlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQ-RLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ccceEEEEEcC-ccchhheeccCCcEEEEEec-cc-eeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCC
Confidence 34577899999 88999999999999999887 33 3777776777777 999999998 89999999999999999998
Q ss_pred ceeeeeecccceeEeEEEEe
Q 021121 271 ALVGRYDHHTEFAVGVDMSV 290 (317)
Q Consensus 271 ~~~~~~~~~~~~v~~~~~~~ 290 (317)
.+..........|..+-|.+
T Consensus 96 ~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ceeccccccccchheeeccc
Confidence 66665555567788888864
No 357
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.18 E-value=0.00017 Score=47.61 Aligned_cols=102 Identities=12% Similarity=0.091 Sum_probs=70.1
Q ss_pred eeEEEec---CCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC
Q 021121 63 VYDLAWS---ESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP 139 (317)
Q Consensus 63 v~~~~~~---~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 139 (317)
|++|++. .+|.+.|++|+.|..|++|+-+ ..+..+. ..+.|++++-...+ .++.+..+|+|-+|+- .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-----e~~~Ei~-e~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~--~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-----EIVAEIT-ETDKVTSLCSLGGG--RFAYALANGTVGVYDR--S 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-----cEEEEEe-cccceEEEEEcCCC--EEEEEecCCEEEEEeC--c
Confidence 4555554 4666899999999999999843 3444444 35677777766553 6999999999999975 3
Q ss_pred ceeEEeeccccceEEEEEecC---CCCeEEEEeCCCeEE
Q 021121 140 TSVRTFKEHAYCVYNATWNPR---HSDVFCSASGDCTLR 175 (317)
Q Consensus 140 ~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~ 175 (317)
+.+...+. +..+.++.+..- +..-|++|-.+|.|-
T Consensus 72 ~RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 72 QRLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ceeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 34444443 334666665543 334688888888874
No 358
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.17 E-value=0.0022 Score=51.51 Aligned_cols=250 Identities=13% Similarity=0.082 Sum_probs=130.8
Q ss_pred EEEecCCCCeEEEEEecccccc----cCceEEEEecCCCCCcceeeeeecCC------CCeeEEEecCCCCCeEEEEEc-
Q 021121 13 VKFSPFYESRLAVATAQNFGIL----GNGRVHVLDLSPAAPALTELVAFDTA------DGVYDLAWSESHDSLLIAAVA- 81 (317)
Q Consensus 13 ~~~~p~~~~~~~~~~~~~~~~~----~~g~i~i~~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~l~~~~~- 81 (317)
+..+| +++.+......+.-. ++-.|.+||..+-.+..... +... .....++++.++ +++++...
T Consensus 41 ~~~sp--dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~--iP~k~R~~~~~~~~~~~ls~dg-k~~~V~N~T 115 (342)
T PF06433_consen 41 VALSP--DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE--IPPKPRAQVVPYKNMFALSADG-KFLYVQNFT 115 (342)
T ss_dssp EEE-T--TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE--ETTS-B--BS--GGGEEE-TTS-SEEEEEEES
T ss_pred eeECC--CCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEe--cCCcchheecccccceEEccCC-cEEEEEccC
Confidence 56788 455544433322211 13468999988754211111 1111 122335566666 35444433
Q ss_pred -CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC-CCceeEEee----ccccce-EE
Q 021121 82 -DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD-RPTSVRTFK----EHAYCV-YN 154 (317)
Q Consensus 82 -dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~----~~~~~v-~~ 154 (317)
...|.|-|+... +.+..+.. .+ |....|.++.-+.+-+.||.+.-..+. .|+...+.. ....++ ..
T Consensus 116 Pa~SVtVVDl~~~---kvv~ei~~-PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~ 188 (342)
T PF06433_consen 116 PATSVTVVDLAAK---KVVGEIDT-PG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEH 188 (342)
T ss_dssp SSEEEEEEETTTT---EEEEEEEG-TS---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S-
T ss_pred CCCeEEEEECCCC---ceeeeecC-CC---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccc
Confidence 245777776654 33333321 11 222334444468888999999999887 454432221 111222 22
Q ss_pred EEEecCCCCeEEEEeCCCeEEEEeCCCCCcee--eeccC----------ccceEEEEecCCCCcEEEEEec-------CC
Q 021121 155 ATWNPRHSDVFCSASGDCTLRIWDVREMGSTM--IIPAH----------EFEILACDWNKYDDCLIASASV-------DK 215 (317)
Q Consensus 155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~----------~~~v~~i~~~~~~~~~l~~~~~-------d~ 215 (317)
-++... +..++-.+.+|.|+--|+....... .+... .+.-.-+++++..+++++.-.. |+
T Consensus 189 ~~~~~~-~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdp 267 (342)
T PF06433_consen 189 PAYSRD-GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDP 267 (342)
T ss_dssp -EEETT-TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-
T ss_pred cceECC-CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCC
Confidence 233333 4455567889999999887654322 11100 1123457777745555444321 11
Q ss_pred --cEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeee-cCCeEEEEecccccceeeeeec
Q 021121 216 --SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCS-YDMTVCLWDFMVEDALVGRYDH 278 (317)
Q Consensus 216 --~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~ 278 (317)
.|-+||+.+.+. +..+.. ..++.+|+.+.+.+-+|++.+ .++.+.+||..+++ .+..+..
T Consensus 268 gteVWv~D~~t~kr-v~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk-~~~~~~~ 330 (342)
T PF06433_consen 268 GTEVWVYDLKTHKR-VARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK-LVRSIEQ 330 (342)
T ss_dssp EEEEEEEETTTTEE-EEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT---EEEEE--
T ss_pred ceEEEEEECCCCeE-EEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc-EEeehhc
Confidence 478888888664 555542 236889999998876676554 57999999999986 4555543
No 359
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.4e-05 Score=67.59 Aligned_cols=95 Identities=19% Similarity=0.273 Sum_probs=78.2
Q ss_pred ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceE-EEEecCCCCcEEEEEecCCcEEEEEccCCCc
Q 021121 149 AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEIL-ACDWNKYDDCLIASASVDKSIKIWDVRNYRV 227 (317)
Q Consensus 149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~-~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 227 (317)
...+..+.|+|. -.++|.+..+|.|.++.+. ...+.+++-+...++ +++|.| +|++|+.|-.||+|++.|..++..
T Consensus 20 ~~~i~~~ewnP~-~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPK-MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCc-cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCc
Confidence 345888999998 8999999999999999887 666777776666676 999999 999999999999999999999875
Q ss_pred cEEEEecCCCceeEEEecC
Q 021121 228 PIAVLNGHGYAVRKVKFSP 246 (317)
Q Consensus 228 ~~~~~~~~~~~v~~~~~~~ 246 (317)
.......-...|.++-|++
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 4443334456788888864
No 360
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.14 E-value=0.0038 Score=52.95 Aligned_cols=209 Identities=11% Similarity=0.123 Sum_probs=106.7
Q ss_pred eEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCC---CCCCceeeccCCcceEEEEE
Q 021121 38 RVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPP---TANPIRSLHEHTREVHSADY 114 (317)
Q Consensus 38 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~---~~~~~~~~~~~~~~v~~~~~ 114 (317)
.|+||+..... +.. ..+.. +.|.++.|..+. .|++-..||.+++||+.... -........-....+....+
T Consensus 62 ~I~iys~sG~l--l~~-i~w~~-~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~ 135 (410)
T PF04841_consen 62 SIQIYSSSGKL--LSS-IPWDS-GRIVGMGWTDDE--ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWF 135 (410)
T ss_pred EEEEECCCCCE--eEE-EEECC-CCEEEEEECCCC--eEEEEEcCCEEEEEeCCCceeechhhhccccCccccccccccc
Confidence 58888766542 333 33344 789999999864 56677789999999986331 00111111111222222233
Q ss_pred ecCCCCEEEEEcCCCEEEEEEcCCCc-eeEEeecccc---------ceEE-EEEecCCCCeEEEEeCCCeEEEEeCCCCC
Q 021121 115 NPTRRDSFITSSWDDTVKLWTVDRPT-SVRTFKEHAY---------CVYN-ATWNPRHSDVFCSASGDCTLRIWDVREMG 183 (317)
Q Consensus 115 ~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~---------~v~~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 183 (317)
..+| ++.-..++.+.+..-.... ..+.+..... .... ..+..+ ....+....++.+.+.+-...+
T Consensus 136 ~~~G---ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~-~~~~i~~~~g~~i~~i~~~~~~ 211 (410)
T PF04841_consen 136 YKNG---IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSD-RVVEILLANGETIYIIDENSFK 211 (410)
T ss_pred CCCC---EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecC-cceEEEEecCCEEEEEEccccc
Confidence 3333 2333334555444322211 1111111000 0111 223333 3344444455556644433221
Q ss_pred ceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecC-CCceeEEEecCCCCeeEEeeecCCeEE
Q 021121 184 STMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH-GYAVRKVKFSPHRRNLLASCSYDMTVC 262 (317)
Q Consensus 184 ~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~ 262 (317)
. +. ..+++..++.|| +++++|.-..+|.+.+.+..-.+ .+..+... ......+.|.-+.. +++.- ...+.
T Consensus 212 ~---i~-~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~-~~~e~~~~~~~~p~~~~WCG~da-v~l~~--~~~l~ 282 (410)
T PF04841_consen 212 Q---ID-SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSE-KLCEFDTDSKSPPKQMAWCGNDA-VVLSW--EDELL 282 (410)
T ss_pred c---cc-CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccc-eeEEeecCcCCCCcEEEEECCCc-EEEEe--CCEEE
Confidence 1 22 246899999999 99999999999999998764433 34333322 34566788876543 22222 34555
Q ss_pred EEe
Q 021121 263 LWD 265 (317)
Q Consensus 263 vwd 265 (317)
+..
T Consensus 283 lvg 285 (410)
T PF04841_consen 283 LVG 285 (410)
T ss_pred EEC
Confidence 554
No 361
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.13 E-value=0.00012 Score=65.52 Aligned_cols=146 Identities=10% Similarity=-0.010 Sum_probs=100.3
Q ss_pred CCCeEEEE-eCCCeEEEEeCCCCCceeeeccCccc-eEEEEecC----CCCcEEEEEecCCcEEEEEccCCCccEEEEe-
Q 021121 161 HSDVFCSA-SGDCTLRIWDVREMGSTMIIPAHEFE-ILACDWNK----YDDCLIASASVDKSIKIWDVRNYRVPIAVLN- 233 (317)
Q Consensus 161 ~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~i~~~~----~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~- 233 (317)
+.++|+.. .....|+-.|++.++.+..+..+... |..++-.. .+....+.|-.+..+..||.|-....+..-.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 35555544 35678999999999999998876644 55554321 1233456677788999999997542222211
Q ss_pred ---cCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121 234 ---GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ 310 (317)
Q Consensus 234 ---~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~ 310 (317)
......+|++-+.+| .||.|+.+|.||+||- .+......+.+-..+|.+|..+.| |++|++.+ +..|.+.+.
T Consensus 572 k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~D-GkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTAD-GKWILATC-KTYLLLIDT 646 (794)
T ss_pred cccccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCC-CcEEEEee-cceEEEEEE
Confidence 234467788888777 5999999999999994 444444556677899999999999 55554443 566777775
Q ss_pred C
Q 021121 311 G 311 (317)
Q Consensus 311 ~ 311 (317)
.
T Consensus 647 ~ 647 (794)
T PF08553_consen 647 L 647 (794)
T ss_pred e
Confidence 3
No 362
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.10 E-value=0.0031 Score=50.73 Aligned_cols=262 Identities=13% Similarity=0.070 Sum_probs=144.5
Q ss_pred CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEE----------cCCeEEEEEeCCCCCCCCceee--c
Q 021121 36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAV----------ADGSVKIYDTALPPTANPIRSL--H 103 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~v~~~~~~~~~~~~~~~--~ 103 (317)
.++++++|.++.+ +.-+.. .+-.-.+..+|+++ .+.+++ ..-.|.+||..+- .+...+ .
T Consensus 16 ~~rv~viD~d~~k--~lGmi~---~g~~~~~~~spdgk-~~y~a~T~~sR~~rG~RtDvv~~~D~~TL---~~~~EI~iP 86 (342)
T PF06433_consen 16 TSRVYVIDADSGK--LLGMID---TGFLGNVALSPDGK-TIYVAETFYSRGTRGERTDVVEIWDTQTL---SPTGEIEIP 86 (342)
T ss_dssp SEEEEEEETTTTE--EEEEEE---EESSEEEEE-TTSS-EEEEEEEEEEETTEEEEEEEEEEEETTTT---EEEEEEEET
T ss_pred cceEEEEECCCCc--EEEEee---cccCCceeECCCCC-EEEEEEEEEeccccccceeEEEEEecCcC---cccceEecC
Confidence 3589999977654 221111 12233466789984 555532 3456999998764 222211 1
Q ss_pred c-CC----cceEEEEEecCCCCEEEEE--cCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEE
Q 021121 104 E-HT----REVHSADYNPTRRDSFITS--SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRI 176 (317)
Q Consensus 104 ~-~~----~~v~~~~~~~~~~~~l~~~--~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 176 (317)
. |. .....++++.+++ +++.. +-.-+|.|-|+..++.+.++... + |...-|.++.-|.+-+.||.+.-
T Consensus 87 ~k~R~~~~~~~~~~~ls~dgk-~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G---C~~iyP~~~~~F~~lC~DGsl~~ 161 (342)
T PF06433_consen 87 PKPRAQVVPYKNMFALSADGK-FLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G---CWLIYPSGNRGFSMLCGDGSLLT 161 (342)
T ss_dssp TS-B--BS--GGGEEE-TTSS-EEEEEEESSSEEEEEEETTTTEEEEEEEGT-S---EEEEEEEETTEEEEEETTSCEEE
T ss_pred CcchheecccccceEEccCCc-EEEEEccCCCCeEEEEECCCCceeeeecCC-C---EEEEEecCCCceEEEecCCceEE
Confidence 1 11 1223356777877 54443 44567888898888887776532 2 12223444566888899999999
Q ss_pred EeCCC-CCceeee----ccCccce-EEEEecCCCCcEEEEEecCCcEEEEEccCCCccE-EEEec----------CCCce
Q 021121 177 WDVRE-MGSTMII----PAHEFEI-LACDWNKYDDCLIASASVDKSIKIWDVRNYRVPI-AVLNG----------HGYAV 239 (317)
Q Consensus 177 ~d~~~-~~~~~~~----~~~~~~v-~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~----------~~~~v 239 (317)
..+.. ++..... .....++ ..-++.. .+..++--+.+|.|+-.|+....... ..... ..+.-
T Consensus 162 v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~ 240 (342)
T PF06433_consen 162 VTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGW 240 (342)
T ss_dssp EEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SS
T ss_pred EEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcce
Confidence 88874 4443221 1112222 2333444 34444446789999999987654211 11110 01233
Q ss_pred eEEEecCCCCeeEEeee--cCC-------eEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEe-ecCCcEEEEe
Q 021121 240 RKVKFSPHRRNLLASCS--YDM-------TVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLAST-GWDELVYVWQ 309 (317)
Q Consensus 240 ~~~~~~~~~~~~l~~~~--~d~-------~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~dg~i~~w~ 309 (317)
.-+++++...++++.-- .++ .|-++|+.+++. +.++.. ..++.+|+.+.+..-+|++. ..++.|.+||
T Consensus 241 Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr-v~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 241 QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR-VARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE-EEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeE-EEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 45788876654332211 122 377778888774 444443 34578999998844477654 4689999999
Q ss_pred cCCCC
Q 021121 310 QGMDP 314 (317)
Q Consensus 310 ~~~~~ 314 (317)
..+..
T Consensus 319 ~~tGk 323 (342)
T PF06433_consen 319 AATGK 323 (342)
T ss_dssp TTT--
T ss_pred CcCCc
Confidence 98753
No 363
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.08 E-value=0.00057 Score=45.14 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=69.5
Q ss_pred eeEEEEec---CCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEE
Q 021121 10 GYSVKFSP---FYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVK 86 (317)
Q Consensus 10 v~~~~~~p---~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 86 (317)
|++|++.. ++.+.|++++. |..|++|+-.. .+......+.|++++-... ..++.+..+|+|-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~-------D~~IRvf~~~e------~~~Ei~e~~~v~~L~~~~~--~~F~Y~l~NGTVG 66 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSD-------DFEIRVFKGDE------IVAEITETDKVTSLCSLGG--GRFAYALANGTVG 66 (111)
T ss_pred eeEEEEEecCCCCcceEEEecC-------CcEEEEEeCCc------EEEEEecccceEEEEEcCC--CEEEEEecCCEEE
Confidence 66777766 33466777766 88999998543 3444456778888888765 4799999999999
Q ss_pred EEEeCCCCCCCCceeeccCCcceEEEEEe---cCCCCEEEEEcCCCEEEE
Q 021121 87 IYDTALPPTANPIRSLHEHTREVHSADYN---PTRRDSFITSSWDDTVKL 133 (317)
Q Consensus 87 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~dg~v~i 133 (317)
+|+-. ..+...+. +..+.++++. .+|...|++|-.+|.|-+
T Consensus 67 vY~~~-----~RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 67 VYDRS-----QRLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred EEeCc-----ceeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 99853 22333332 2335565553 445557999998998743
No 364
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.08 E-value=0.004 Score=51.05 Aligned_cols=200 Identities=13% Similarity=0.187 Sum_probs=99.5
Q ss_pred EecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCC-cceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEe
Q 021121 67 AWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHT-REVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTF 145 (317)
Q Consensus 67 ~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 145 (317)
+|.++|.++|+.+..+|.-.+|-++... ..+..+.... .......++|+++ .++-......|+-.|+++.+....+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t--~~i~QLTdg~g~~~~g~~~s~~~~-~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLAT--GEITQLTDGPGDNTFGGFLSPDDR-ALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT---EEEE---SS-B-TTT-EE-TTSS-EEEEEETTTEEEEEETTT--EEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEccc--CEEEECccCCCCCccceEEecCCC-eEEEEECCCeEEEEECCcCcEEEEE
Confidence 5788887788877777766666554321 2333333322 2222456678876 5544444568899999998876666
Q ss_pred eccccceEEEEEecC-CCCeEEEEe----------------------CCCeEEEEeCCCCCceeeeccCccceEEEEecC
Q 021121 146 KEHAYCVYNATWNPR-HSDVFCSAS----------------------GDCTLRIWDVREMGSTMIIPAHEFEILACDWNK 202 (317)
Q Consensus 146 ~~~~~~v~~~~~~~~-~~~~l~~~~----------------------~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 202 (317)
......+-...|..+ ++..++-.- ....|.-.|+.+++....+. ....+..+.++|
T Consensus 119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP 197 (386)
T PF14583_consen 119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSP 197 (386)
T ss_dssp E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEET
T ss_pred ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCC
Confidence 666666655666532 244433211 12345566777766544444 556788999999
Q ss_pred CCCcEEEEEecCC----cEEEEEccCCCccEEEEecC--CCceeEEEecCCCCeeEEeee----cCCeEEEEeccccc
Q 021121 203 YDDCLIASASVDK----SIKIWDVRNYRVPIAVLNGH--GYAVRKVKFSPHRRNLLASCS----YDMTVCLWDFMVED 270 (317)
Q Consensus 203 ~~~~~l~~~~~d~----~i~v~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~----~d~~i~vwd~~~~~ 270 (317)
.++.+|+-|.+.. .-|+|-++........+..+ ...+..=-|.|+|..+..-+- .+..|.-+|+.+++
T Consensus 198 ~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~ 275 (386)
T PF14583_consen 198 TDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE 275 (386)
T ss_dssp TEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred CCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence 8888888876432 23677666543323333322 233444568999986554332 34457777887765
No 365
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=98.07 E-value=6.5e-06 Score=60.99 Aligned_cols=145 Identities=10% Similarity=0.035 Sum_probs=84.9
Q ss_pred CeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEE
Q 021121 163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKV 242 (317)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~ 242 (317)
..+...+.+|.|+-++++..+....-. ..+.+..-.+..+..+++|+.+|.|++|..............-...|-++
T Consensus 31 ~~l~~~sa~~~v~~~~~~k~k~s~rse---~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 31 HLLRATSADGLVRERKVRKHKESCRSE---RFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG 107 (238)
T ss_pred hhhccccCCcccccchhhhhhhhhhhh---hhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence 344556778888888877543222111 11111111112456788999999999998773222111111122233332
Q ss_pred EecCCCCeeEEeeecCCeEEEEecccccceeeeeeccc-ceeEeEEEEeccCCeEEEe--ecCCcEEEEecCC
Q 021121 243 KFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHT-EFAVGVDMSVLVEGLLAST--GWDELVYVWQQGM 312 (317)
Q Consensus 243 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~--~~dg~i~~w~~~~ 312 (317)
.-.-+...+..+++.||.|+.|++.-.+ .+.....|. .++.....+.. +..++.+ |.|..++.|++..
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k-~~g~~g~h~~~~~e~~ivv~s-d~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNK-VLGYVGQHNFESGEELIVVGS-DEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCc-eeeeeccccCCCcceeEEecC-CceEEeeccccchhhhhcchhh
Confidence 2222222278899999999999988776 445555666 45555555554 5677777 7788888888765
No 366
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=98.06 E-value=0.0051 Score=51.66 Aligned_cols=278 Identities=16% Similarity=0.189 Sum_probs=152.5
Q ss_pred CCCeEEEEEecccccccCceEEEEecCCCCCc-ceeeeeecCCCCeeEEEecC---CCCCeEEEEEcCCeEEEEEeCCCC
Q 021121 19 YESRLAVATAQNFGILGNGRVHVLDLSPAAPA-LTELVAFDTADGVYDLAWSE---SHDSLLIAAVADGSVKIYDTALPP 94 (317)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~i~v~~~~~~~ 94 (317)
+.+++++++. .|.++||+....+.. ...+...+...+|..++.-+ ..+...++.-.-..+.+|.+....
T Consensus 36 ~~d~IivGS~-------~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~ 108 (418)
T PF14727_consen 36 GSDKIIVGSY-------SGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVD 108 (418)
T ss_pred CccEEEEecc-------ccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecC
Confidence 3456666655 899999998665422 23444446778899888653 222333344567889999984331
Q ss_pred CC------CCceeeccC--CcceEEEEEecC----CCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCC
Q 021121 95 TA------NPIRSLHEH--TREVHSADYNPT----RRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS 162 (317)
Q Consensus 95 ~~------~~~~~~~~~--~~~v~~~~~~~~----~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (317)
.. ..+.....| ......+++-|- ++.++.+-+.||.+.+++-+.-...+.+.. ---...+.+.+. .
T Consensus 109 g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~-t 186 (418)
T PF14727_consen 109 GTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPR-T 186 (418)
T ss_pred CCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeec-C
Confidence 11 111222223 233344444332 346888999999999999765443334433 233456778887 7
Q ss_pred CeEEEEeCCCeEEEEeCCCCCc-----------------ee------eeccCccc---eEEEEecCCCCcEEEEEecCCc
Q 021121 163 DVFCSASGDCTLRIWDVREMGS-----------------TM------IIPAHEFE---ILACDWNKYDDCLIASASVDKS 216 (317)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~-----------------~~------~~~~~~~~---v~~i~~~~~~~~~l~~~~~d~~ 216 (317)
+.|++++.+..+.-|..+.... .+ ++. -... +..+.++......++.| ...
T Consensus 187 Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLg--er~ 263 (418)
T PF14727_consen 187 DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLG--ERS 263 (418)
T ss_pred CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEe--cce
Confidence 8888999888888887532100 00 111 1112 33333433123334333 345
Q ss_pred EEEEEccCCCccEEEEecCCCceeEEE-e------cCCCCeeEEeeecCCeEEEEecccccceeeeeecccce--eEeEE
Q 021121 217 IKIWDVRNYRVPIAVLNGHGYAVRKVK-F------SPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEF--AVGVD 287 (317)
Q Consensus 217 i~v~d~~~~~~~~~~~~~~~~~v~~~~-~------~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~--v~~~~ 287 (317)
+.+.+... . +...+.......+++ | .|.....++.++.++++.||.=.+ +.-.-.....+ |.-..
T Consensus 264 Lf~l~~~G-~--l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~---L~WsA~l~~~PVal~v~~ 337 (418)
T PF14727_consen 264 LFCLKDNG-S--LRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT---LVWSAQLPHVPVALSVAN 337 (418)
T ss_pred EEEEcCCC-e--EEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe---EEEecCCCCCCEEEEecc
Confidence 66665532 2 222222222222222 1 223222477888999999986322 22111111222 22222
Q ss_pred EEeccCCeEEEeecCCcEEEEecCCCCC
Q 021121 288 MSVLVEGLLASTGWDELVYVWQQGMDPR 315 (317)
Q Consensus 288 ~~~~~~~~l~s~~~dg~i~~w~~~~~~~ 315 (317)
|... ..+|++-+.+|.+.+-=+.++|.
T Consensus 338 ~~~~-~G~IV~Ls~~G~L~v~YLGTdPs 364 (418)
T PF14727_consen 338 FNGL-KGLIVSLSDEGQLSVSYLGTDPS 364 (418)
T ss_pred cCCC-CceEEEEcCCCcEEEEEeCCCCc
Confidence 3333 66999999999999999988875
No 367
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.93 E-value=0.008 Score=49.38 Aligned_cols=281 Identities=14% Similarity=0.067 Sum_probs=129.6
Q ss_pred EEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCC
Q 021121 14 KFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALP 93 (317)
Q Consensus 14 ~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~ 93 (317)
+|.++ ..+++.++... +...+++.|+.+.. ...+..... .......++|++ +.++-......|.-.|+++.
T Consensus 42 ~ft~d-G~kllF~s~~d----g~~nly~lDL~t~~--i~QLTdg~g-~~~~g~~~s~~~-~~~~Yv~~~~~l~~vdL~T~ 112 (386)
T PF14583_consen 42 CFTDD-GRKLLFASDFD----GNRNLYLLDLATGE--ITQLTDGPG-DNTFGGFLSPDD-RALYYVKNGRSLRRVDLDTL 112 (386)
T ss_dssp -B-TT-S-EEEEEE-TT----SS-EEEEEETTT-E--EEE---SS--B-TTT-EE-TTS-SEEEEEETTTEEEEEETTT-
T ss_pred CcCCC-CCEEEEEeccC----CCcceEEEEcccCE--EEECccCCC-CCccceEEecCC-CeEEEEECCCeEEEEECCcC
Confidence 56774 34666655531 24466777776654 333332211 223356677876 45554445567888888765
Q ss_pred CCCCCceeeccCCcceEEEEEecCCCCEEEEEcC-----------------------CCEEEEEEcCCCceeEEeecccc
Q 021121 94 PTANPIRSLHEHTREVHSADYNPTRRDSFITSSW-----------------------DDTVKLWTVDRPTSVRTFKEHAY 150 (317)
Q Consensus 94 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------------------dg~v~iwd~~~~~~~~~~~~~~~ 150 (317)
+....+.....-+-...|..+.....+++.. ...|.-.|+.+++....+. ...
T Consensus 113 ---e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~ 188 (386)
T PF14583_consen 113 ---EERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTD 188 (386)
T ss_dssp ----EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS
T ss_pred ---cEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCc
Confidence 3333444444555445664222112333311 2456666777776554444 566
Q ss_pred ceEEEEEecCCCCeEEEEeC---CC-eEEEEeCCCC-CceeeeccC--ccceEEEEecCCCCcEEEEEe-----cCCcEE
Q 021121 151 CVYNATWNPRHSDVFCSASG---DC-TLRIWDVREM-GSTMIIPAH--EFEILACDWNKYDDCLIASAS-----VDKSIK 218 (317)
Q Consensus 151 ~v~~~~~~~~~~~~l~~~~~---dg-~i~i~d~~~~-~~~~~~~~~--~~~v~~i~~~~~~~~~l~~~~-----~d~~i~ 218 (317)
.+..+.|+|.++.+|+-|-+ +. .-++|-+++. .....+..+ ...+..=-|.| +|..|.--+ .+..|.
T Consensus 189 wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~-DG~~i~y~~~~~~~~~~~i~ 267 (386)
T PF14583_consen 189 WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP-DGSTIWYDSYTPGGQDFWIA 267 (386)
T ss_dssp -EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T-TSS-EEEEEEETTT--EEEE
T ss_pred cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC-CCCEEEEEeecCCCCceEEE
Confidence 78899999997888777644 22 1356655432 223333222 23345556888 776655432 234577
Q ss_pred EEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCC----------------eEEEEecccccceeeeeeccc--
Q 021121 219 IWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDM----------------TVCLWDFMVEDALVGRYDHHT-- 280 (317)
Q Consensus 219 v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~----------------~i~vwd~~~~~~~~~~~~~~~-- 280 (317)
-+|..+.+.. .+. ...+...+..+++++ +++-=+.|. .|.++++..+.. ..+..|.
T Consensus 268 ~~d~~t~~~~--~~~-~~p~~~H~~ss~Dg~-L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~--~~l~~h~~s 341 (386)
T PF14583_consen 268 GYDPDTGERR--RLM-EMPWCSHFMSSPDGK-LFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF--RKLARHDTS 341 (386)
T ss_dssp EE-TTT--EE--EEE-EE-SEEEEEE-TTSS-EEEEEE-------------------EEEEEETTTTEE--EEEEE----
T ss_pred eeCCCCCCce--EEE-eCCceeeeEEcCCCC-EEEecCCCCCccccccccceecCCcEEEEeccccCce--eeeeeccCc
Confidence 7777776531 221 112344666778887 444322221 456677765541 1112121
Q ss_pred --------c-eeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121 281 --------E-FAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP 314 (317)
Q Consensus 281 --------~-~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~ 314 (317)
. .=....|+||+..+|.++...|...||-++.++
T Consensus 342 w~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i~~ 384 (386)
T PF14583_consen 342 WKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEIPD 384 (386)
T ss_dssp ---BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE--C
T ss_pred ceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEeCcc
Confidence 1 124579999976788888899998888776543
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.00063 Score=56.97 Aligned_cols=204 Identities=12% Similarity=0.055 Sum_probs=118.7
Q ss_pred cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeec-------CC-CCeeEEEecCCCCCeEEEE
Q 021121 8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFD-------TA-DGVYDLAWSESHDSLLIAA 79 (317)
Q Consensus 8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~-------~~-~~v~~~~~~~~~~~~l~~~ 79 (317)
..+.++++..- ++.+++.+..+.-+.++.++-|+.-. .+ +....... +. .+-..|-...+.+-+|..+
T Consensus 277 ~~i~sl~~~a~-~NS~Lvv~~~ns~V~Rn~~iGVfk~e-kg--l~f~~~i~n~s~~~g~S~~P~K~mL~~~dsnlil~~~ 352 (644)
T KOG2395|consen 277 GGIGSLDEGAL-DNSFLVVGYGNSYVTRNNRIGVFKNE-KG--LEFKAAIKNVSDGDGKSIDPHKAMLHRADSNLILMDG 352 (644)
T ss_pred cccchhhhccc-CCceEEecccceEEEecceeeeeccC-Cc--eEEEeccCcccCCCccccCcchhhhhccccceEeeCC
Confidence 44556666653 45666666543333445555555532 11 11110000 00 1111222333433345555
Q ss_pred EcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCC------EEEEEcCCCEEEEEEcCCCce--eEEeecc---
Q 021121 80 VADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD------SFITSSWDDTVKLWTVDRPTS--VRTFKEH--- 148 (317)
Q Consensus 80 ~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~l~~~~~dg~v~iwd~~~~~~--~~~~~~~--- 148 (317)
.....++-.|++.+ +.+....-+.. |+-+.+.|+.+. .-+.|-.|..|.-||++-... +..-+.|
T Consensus 353 ~~~~~l~klDIE~G---KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~ 428 (644)
T KOG2395|consen 353 GEQDKLYKLDIERG---KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS 428 (644)
T ss_pred CCcCcceeeecccc---eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence 55666777888776 66666665554 666777776431 234566688999999874322 1111222
Q ss_pred -ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEcc
Q 021121 149 -AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR 223 (317)
Q Consensus 149 -~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~ 223 (317)
.....|.+-.. ..++++|+.+|.|++||--.......+++...+|..+..+. +|++|+..+ +..+.+.++.
T Consensus 429 ~k~nFsc~aTT~--sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvta-dGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 429 TKNNFSCFATTE--SGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTA-DGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred cccccceeeecC--CceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeec-cCcEEEEec-ccEEEEEEEe
Confidence 23455665554 45788999999999999744455566788889999999998 888877655 5566666654
No 369
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.89 E-value=0.0046 Score=54.67 Aligned_cols=219 Identities=12% Similarity=0.114 Sum_probs=117.0
Q ss_pred ceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC------CeEEEEEeCCCCCCCCceeeccCCcceE
Q 021121 37 GRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD------GSVKIYDTALPPTANPIRSLHEHTREVH 110 (317)
Q Consensus 37 g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~v~~~~~~~~~~~~~~~~~~~~~v~ 110 (317)
..+..||..... ............-.+++...+ .+.++|+.+ ..+..||.... ++.....+........
T Consensus 301 ~~ve~yd~~~~~--w~~~a~m~~~r~~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~~-~W~~~a~M~~~R~~~~ 375 (571)
T KOG4441|consen 301 RSVECYDPKTNE--WSSLAPMPSPRCRVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRTN-QWTPVAPMNTKRSDFG 375 (571)
T ss_pred ceeEEecCCcCc--EeecCCCCcccccccEEEECC--EEEEEccccCCCcccceEEEecCCCC-ceeccCCccCccccce
Confidence 467888877663 344444445555566666653 588888888 35677777654 3444444443333322
Q ss_pred EEEEecCCCCEEEEEcCCCE-----EEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCC------eEEEEeC
Q 021121 111 SADYNPTRRDSFITSSWDDT-----VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDC------TLRIWDV 179 (317)
Q Consensus 111 ~~~~~~~~~~~l~~~~~dg~-----v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~i~d~ 179 (317)
.... +|. +.++|+.||. +-.||..+.+-...-. ............-++.+.++|+.++ ++..||.
T Consensus 376 v~~l--~g~-iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP 451 (571)
T KOG4441|consen 376 VAVL--DGK-LYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDP 451 (571)
T ss_pred eEEE--CCE-EEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcC
Confidence 2222 244 8888888864 7778877653221111 1112222222222377888887554 4678888
Q ss_pred CCCC--ceeeeccCccceEEEEecCCCCcEEEEEecCCc-----EEEEEccCCCccEEE-EecCCCceeEEEecCCCCee
Q 021121 180 REMG--STMIIPAHEFEILACDWNKYDDCLIASASVDKS-----IKIWDVRNYRVPIAV-LNGHGYAVRKVKFSPHRRNL 251 (317)
Q Consensus 180 ~~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~-----i~v~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~ 251 (317)
.+.+ .+..+........ ++.- ++.+++.|+.|+. +..||.++.+-.... .......+....+ ++. +
T Consensus 452 ~t~~W~~~~~M~~~R~~~g-~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~-l 525 (571)
T KOG4441|consen 452 ETNTWTLIAPMNTRRSGFG-VAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGK-L 525 (571)
T ss_pred CCCceeecCCcccccccce-EEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCE-E
Confidence 7653 2222222222222 3322 6788888887763 777888775421111 1112222222222 343 6
Q ss_pred EEeeecCCe-----EEEEeccccc
Q 021121 252 LASCSYDMT-----VCLWDFMVED 270 (317)
Q Consensus 252 l~~~~~d~~-----i~vwd~~~~~ 270 (317)
.+.|+.||. |..||..+.+
T Consensus 526 y~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 526 YAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred EEEecccCccccceeEEcCCCCCc
Confidence 788887763 6667666554
No 370
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.86 E-value=0.009 Score=47.87 Aligned_cols=229 Identities=14% Similarity=0.156 Sum_probs=124.5
Q ss_pred CCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCc
Q 021121 20 ESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPI 99 (317)
Q Consensus 20 ~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~ 99 (317)
+..+++++. +| ++++++..... ...+ .....|..+...|+-+ .|++-+ |+.+.++++..-......
T Consensus 7 ~~~L~vGt~-------~G-l~~~~~~~~~~-~~~i---~~~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~~l~~~~~~ 72 (275)
T PF00780_consen 7 GDRLLVGTE-------DG-LYVYDLSDPSK-PTRI---LKLSSITQLSVLPELN-LLLVLS-DGQLYVYDLDSLEPVSTS 72 (275)
T ss_pred CCEEEEEEC-------CC-EEEEEecCCcc-ceeE---eecceEEEEEEecccC-EEEEEc-CCccEEEEchhhcccccc
Confidence 456666654 66 99999932221 1111 2333499999998764 444443 599999998764222211
Q ss_pred ee-----------eccCCcceEEEE--EecCCCCEEEEEcCCCEEEEEEcCCC-----ceeEEeeccccceEEEEEecCC
Q 021121 100 RS-----------LHEHTREVHSAD--YNPTRRDSFITSSWDDTVKLWTVDRP-----TSVRTFKEHAYCVYNATWNPRH 161 (317)
Q Consensus 100 ~~-----------~~~~~~~v~~~~--~~~~~~~~l~~~~~dg~v~iwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~ 161 (317)
.. .......+...+ -...+...++.+. ...|.+|..... +..+.+. -...+..++|.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--- 147 (275)
T PF00780_consen 73 APLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--- 147 (275)
T ss_pred ccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe---
Confidence 00 111223344444 1123332444444 458998887653 3444554 45779999998
Q ss_pred CCeEEEEeCCCeEEEEeCCCCCceeeeccC------------ccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccE
Q 021121 162 SDVFCSASGDCTLRIWDVREMGSTMIIPAH------------EFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPI 229 (317)
Q Consensus 162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 229 (317)
++.++.|..+ ...+.|+.++.....+... ..++..+... ++.+|++- +..-.+.|... +...
T Consensus 148 ~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~Ll~~--~~~g~fv~~~G-~~~r 221 (275)
T PF00780_consen 148 GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS--DNEFLLCY--DNIGVFVNKNG-EPSR 221 (275)
T ss_pred CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC--CceEEEEe--cceEEEEcCCC-CcCc
Confidence 4566666654 4788999876554333211 1233333333 34455442 33333444433 3212
Q ss_pred -EEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecc
Q 021121 230 -AVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH 279 (317)
Q Consensus 230 -~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 279 (317)
..+.- ......+++. .+ +|++.. ++.|.||++.+++ +++.+...
T Consensus 222 ~~~i~W-~~~p~~~~~~--~p-yli~~~-~~~iEV~~~~~~~-lvQ~i~~~ 266 (275)
T PF00780_consen 222 KSTIQW-SSAPQSVAYS--SP-YLIAFS-SNSIEVRSLETGE-LVQTIPLP 266 (275)
T ss_pred ccEEEc-CCchhEEEEE--CC-EEEEEC-CCEEEEEECcCCc-EEEEEECC
Confidence 23332 2355667774 34 455544 4569999999986 55665543
No 371
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.0012 Score=59.98 Aligned_cols=100 Identities=15% Similarity=0.295 Sum_probs=74.4
Q ss_pred CeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceE
Q 021121 74 SLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVY 153 (317)
Q Consensus 74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 153 (317)
..++.|+..|.+...|+... ..+...-..-.++|++++|+.+|. .++.|-.+|.|.+||+..++.++.+..+..+.+
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 47888999999999887642 222222233468999999999998 899999999999999999999988877666555
Q ss_pred EEE---EecCCCCeEEEEeCCCeEEEEeC
Q 021121 154 NAT---WNPRHSDVFCSASGDCTLRIWDV 179 (317)
Q Consensus 154 ~~~---~~~~~~~~l~~~~~dg~i~i~d~ 179 (317)
.+- +..+ +..++++...|. +|.+
T Consensus 177 ~vi~v~~t~~-nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQ-NSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCC-CcEEEEccCCCc--eEEE
Confidence 443 3444 446778877776 4544
No 372
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.81 E-value=0.0044 Score=52.97 Aligned_cols=155 Identities=11% Similarity=0.220 Sum_probs=96.6
Q ss_pred CCcceEEEEEecCCCCEEEEEc--CCCEEEEEEcCCCceeEEeeccccceEEEEEecCC---CCeEEEEeCCCeEEEEeC
Q 021121 105 HTREVHSADYNPTRRDSFITSS--WDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRH---SDVFCSASGDCTLRIWDV 179 (317)
Q Consensus 105 ~~~~v~~~~~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~i~d~ 179 (317)
--.++..++|. ||++.+++.- .+|.+++=| ...+..|. -|..+.|.|-. ...+++.-....|.+|.+
T Consensus 18 AiHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 18 AIHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred hhccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 34578889997 5554666653 344444322 22333333 38899999851 223445566788999998
Q ss_pred CC-----CCceeeecc---Cccc--eEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCC
Q 021121 180 RE-----MGSTMIIPA---HEFE--ILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRR 249 (317)
Q Consensus 180 ~~-----~~~~~~~~~---~~~~--v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 249 (317)
.. .+.+..... ...+ ...+.|+| ....|++-.....-.+++++.....+..-....+-|.|.+|.+||+
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQ 168 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCC
Confidence 62 222222111 1112 24678999 7777777666555567787766554554445567899999999999
Q ss_pred eeEEeeecCCeEEEEeccc
Q 021121 250 NLLASCSYDMTVCLWDFMV 268 (317)
Q Consensus 250 ~~l~~~~~d~~i~vwd~~~ 268 (317)
+++++.+..=.-++||-..
T Consensus 169 RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEEEEeCCeEEEEEecCch
Confidence 8777776666678898543
No 373
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.78 E-value=0.0059 Score=54.00 Aligned_cols=227 Identities=14% Similarity=0.083 Sum_probs=117.4
Q ss_pred CCeEEEEEcCC------eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCC------CEEEEEEcCCCc
Q 021121 73 DSLLIAAVADG------SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD------DTVKLWTVDRPT 140 (317)
Q Consensus 73 ~~~l~~~~~dg------~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~iwd~~~~~ 140 (317)
+.+++.|+.++ .+..||..+. .+.....+.. ...-.+++...+ . +.++|+.| ..+..||..+.+
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~-~w~~~a~m~~-~r~~~~~~~~~~-~-lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTN-EWSSLAPMPS-PRCRVGVAVLNG-K-LYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcC-cEeecCCCCc-ccccccEEEECC-E-EEEEccccCCCcccceEEEecCCCCc
Confidence 35777777763 5777887654 2333333332 223344555433 3 78888888 357788887765
Q ss_pred eeEEeeccccceEEEEEecCCCCeEEEEeCCCe-----EEEEeCCCCCc--eeeeccCccceEEEEecCCCCcEEEEEec
Q 021121 141 SVRTFKEHAYCVYNATWNPRHSDVFCSASGDCT-----LRIWDVREMGS--TMIIPAHEFEILACDWNKYDDCLIASASV 213 (317)
Q Consensus 141 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~l~~~~~ 213 (317)
-.. +..-..+-.......-++.+.++|+.||. +..||.++.+= ...+.. ..........++.+.++|+.
T Consensus 361 W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~---~r~~~gv~~~~g~iYi~GG~ 436 (571)
T KOG4441|consen 361 WTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT---RRSGHGVAVLGGKLYIIGGG 436 (571)
T ss_pred eec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc---ceeeeEEEEECCEEEEEcCc
Confidence 222 21111111111112223788889998865 77788776431 221221 22222222227888888886
Q ss_pred CC------cEEEEEccCCCcc-EEEEecCCCceeEEEecCCCCeeEEeeecCCe-----EEEEecccccceeeeeecccc
Q 021121 214 DK------SIKIWDVRNYRVP-IAVLNGHGYAVRKVKFSPHRRNLLASCSYDMT-----VCLWDFMVEDALVGRYDHHTE 281 (317)
Q Consensus 214 d~------~i~v~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-----i~vwd~~~~~~~~~~~~~~~~ 281 (317)
++ ++..||..+..-. +.......... .++.- ++. +.+.||.|+. |..||..+.+-.. ...-..
T Consensus 437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~~-~~~-iYvvGG~~~~~~~~~VE~ydp~~~~W~~--v~~m~~ 511 (571)
T KOG4441|consen 437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAVL-NGK-IYVVGGFDGTSALSSVERYDPETNQWTM--VAPMTS 511 (571)
T ss_pred CCCccccceEEEEcCCCCceeecCCcccccccc-eEEEE-CCE-EEEECCccCCCccceEEEEcCCCCceeE--cccCcc
Confidence 64 4678887765410 00111111111 13332 344 7888887763 7778888776221 121122
Q ss_pred eeEeEEEEeccCCeEEEeecCC-----cEEEEecCC
Q 021121 282 FAVGVDMSVLVEGLLASTGWDE-----LVYVWQQGM 312 (317)
Q Consensus 282 ~v~~~~~~~~~~~~l~s~~~dg-----~i~~w~~~~ 312 (317)
+.........++.+.+.||.|| +|..||..+
T Consensus 512 ~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 512 PRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred ccccccEEEECCEEEEEecccCccccceeEEcCCCC
Confidence 2222333333367888888776 455555443
No 374
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.76 E-value=0.02 Score=48.91 Aligned_cols=248 Identities=15% Similarity=0.145 Sum_probs=125.8
Q ss_pred eEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC-------
Q 021121 11 YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG------- 83 (317)
Q Consensus 11 ~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------- 83 (317)
...++||+ ..+++.+.+.. ......++++|+.++......+ ... .-..+.|.+++..++.+...+.
T Consensus 127 ~~~~~Spd-g~~la~~~s~~--G~e~~~l~v~Dl~tg~~l~d~i---~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 127 GGFSVSPD-GKRLAYSLSDG--GSEWYTLRVFDLETGKFLPDGI---ENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEETTT-SSEEEEEEEET--TSSEEEEEEEETTTTEEEEEEE---EEE-ESEEEEECTTSSEEEEEECSTTTSS-CCG
T ss_pred eeeeECCC-CCEEEEEecCC--CCceEEEEEEECCCCcCcCCcc---ccc-ccceEEEeCCCCEEEEEEeCcccccccCC
Confidence 35778885 34455554431 0012359999998874211111 111 1223999999865555554332
Q ss_pred ---eEEEEEeCCCCCCCCceeeccCCcc--eEEEEEecCCCCEEEEEcC--C-CEEEEEEcCCC----ceeEEeeccccc
Q 021121 84 ---SVKIYDTALPPTANPIRSLHEHTRE--VHSADYNPTRRDSFITSSW--D-DTVKLWTVDRP----TSVRTFKEHAYC 151 (317)
Q Consensus 84 ---~i~v~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~--d-g~v~iwd~~~~----~~~~~~~~~~~~ 151 (317)
.|..|++.++. ......+...... ...+..+++++.+++.... + ..+.+.++..+ .....+......
T Consensus 200 ~~~~v~~~~~gt~~-~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~ 278 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQ-SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDG 278 (414)
T ss_dssp CCEEEEEEETTS-G-GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS
T ss_pred CCcEEEEEECCCCh-HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCc
Confidence 25666665431 1112334433333 5678889999844443332 2 45888888764 233333333333
Q ss_pred e-EEEEEecCCCCeEEEE---eCCCeEEEEeCCCCCc---eeeeccCcc--ceEEEEecCCCCcEEEEEecCC--cEEEE
Q 021121 152 V-YNATWNPRHSDVFCSA---SGDCTLRIWDVREMGS---TMIIPAHEF--EILACDWNKYDDCLIASASVDK--SIKIW 220 (317)
Q Consensus 152 v-~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~---~~~~~~~~~--~v~~i~~~~~~~~~l~~~~~d~--~i~v~ 220 (317)
+ ..+... . +.+++.. ...+.|.-.++.+... ...+..+.. .+..+... .+.+++....++ .|+++
T Consensus 279 ~~~~v~~~-~-~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 279 VEYYVDHH-G-DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVY 354 (414)
T ss_dssp -EEEEEEE-T-TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEE
T ss_pred eEEEEEcc-C-CEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEE
Confidence 3 334333 2 4444433 2346777788877653 223444444 34555443 445555555555 48888
Q ss_pred EccCCCccEEEEecCCCceeEEEecCCCCeeEEeeec---CCeEEEEeccccc
Q 021121 221 DVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSY---DMTVCLWDFMVED 270 (317)
Q Consensus 221 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~vwd~~~~~ 270 (317)
++............-.+.|..+...+++..+.++.+. -+++..||+.+++
T Consensus 355 ~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 355 DLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp ETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred ECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 8882222222222234456677766777666655553 2467888888776
No 375
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.73 E-value=0.00013 Score=38.09 Aligned_cols=38 Identities=32% Similarity=0.573 Sum_probs=32.6
Q ss_pred ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEe
Q 021121 140 TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD 178 (317)
Q Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d 178 (317)
+....+..|...+.++.|.+. ...+++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPD-GKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCC-CCEEEEecCCCeEEEcC
Confidence 445666778889999999998 68999999999999996
No 376
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.73 E-value=0.013 Score=45.67 Aligned_cols=240 Identities=15% Similarity=0.148 Sum_probs=128.3
Q ss_pred CcceeEEEEecCCCCeEEEEEecccccccCc-eEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC---
Q 021121 7 PFNGYSVKFSPFYESRLAVATAQNFGILGNG-RVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD--- 82 (317)
Q Consensus 7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g-~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--- 82 (317)
+.....+.|+|.....++.+-- -| -..++|.+.... ...+.......---.=.|||||. +|.+.-+|
T Consensus 67 paR~Hgi~~~p~~~ravafARr-------PGtf~~vfD~~~~~~-pv~~~s~~~RHfyGHGvfs~dG~-~LYATEndfd~ 137 (366)
T COG3490 67 PARGHGIAFHPALPRAVAFARR-------PGTFAMVFDPNGAQE-PVTLVSQEGRHFYGHGVFSPDGR-LLYATENDFDP 137 (366)
T ss_pred ccccCCeecCCCCcceEEEEec-------CCceEEEECCCCCcC-cEEEecccCceeecccccCCCCc-EEEeecCCCCC
Confidence 4455678888853333333322 33 457888877653 22222111111112236999994 66655443
Q ss_pred --CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcC------------------CCEEEEEEcCCCcee
Q 021121 83 --GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW------------------DDTVKLWTVDRPTSV 142 (317)
Q Consensus 83 --g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------------------dg~v~iwd~~~~~~~ 142 (317)
|.|-|||... ....+..+..|.-.-..+.|.+||+ .++.+.. .-++.+.|..+++.+
T Consensus 138 ~rGViGvYd~r~--~fqrvgE~~t~GiGpHev~lm~DGr-tlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~li 214 (366)
T COG3490 138 NRGVIGVYDARE--GFQRVGEFSTHGIGPHEVTLMADGR-TLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLI 214 (366)
T ss_pred CCceEEEEeccc--ccceecccccCCcCcceeEEecCCc-EEEEeCCceecccccCccccchhhcCccEEEEeccccchh
Confidence 7899999873 3556667778888888899999998 5555432 112333343344333
Q ss_pred EEee----ccccceEEEEEecCCCCeEEEEeCCCe-----EEEEeCCCCCceeeec-------cCccceEEEEecCCCCc
Q 021121 143 RTFK----EHAYCVYNATWNPRHSDVFCSASGDCT-----LRIWDVREMGSTMIIP-------AHEFEILACDWNKYDDC 206 (317)
Q Consensus 143 ~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~-------~~~~~v~~i~~~~~~~~ 206 (317)
.+.. .+.-.+..++..++ +.+.+.+-..|. -.+=-.+.++++..+. .....|-+++.+..++-
T Consensus 215 ekh~Lp~~l~~lSiRHld~g~d-gtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~gl 293 (366)
T COG3490 215 EKHTLPASLRQLSIRHLDIGRD-GTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGL 293 (366)
T ss_pred hhccCchhhhhcceeeeeeCCC-CcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCe
Confidence 3221 22345666776666 444443322221 1111112233333332 12345778888874555
Q ss_pred EEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEe
Q 021121 207 LIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265 (317)
Q Consensus 207 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd 265 (317)
..++.-..+...+||..++.. +.. ..- .....++-...+ ++..+.+|.+.++.
T Consensus 294 V~lTSP~GN~~vi~da~tG~v-v~~-a~l-~daaGva~~~~g---f~vssg~G~~~~~s 346 (366)
T COG3490 294 VALTSPRGNRAVIWDAATGAV-VSE-AAL-PDAAGVAAAKGG---FAVSSGQGRIIFYS 346 (366)
T ss_pred EEEecCCCCeEEEEEcCCCcE-Eec-ccc-cccccceeccCc---eEEecCCceEEecc
Confidence 556666667789999999864 222 111 122233333222 45556688888774
No 377
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.73 E-value=0.019 Score=47.76 Aligned_cols=231 Identities=15% Similarity=0.163 Sum_probs=105.3
Q ss_pred eEEEEecCCCCCcceeee-e--ecC-CCCeeEEEec-----C-----CCCCeEEEEE-cCCeEEEEEeCCCCCC-CCcee
Q 021121 38 RVHVLDLSPAAPALTELV-A--FDT-ADGVYDLAWS-----E-----SHDSLLIAAV-ADGSVKIYDTALPPTA-NPIRS 101 (317)
Q Consensus 38 ~i~i~~~~~~~~~~~~~~-~--~~~-~~~v~~~~~~-----~-----~~~~~l~~~~-~dg~i~v~~~~~~~~~-~~~~~ 101 (317)
.+-..|+++..+...++. . ..+ .......-|+ + ...++|+..+ ..++|.|.|+.+.... +..+.
T Consensus 38 ~LatVDvdP~S~tYgqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~Kv 117 (461)
T PF05694_consen 38 YLATVDVDPDSPTYGQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKV 117 (461)
T ss_dssp EEEEEE--TTSTTTTSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEE
T ss_pred eEEEEECCCCCCCcccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEee
Confidence 566777776654332221 1 122 2345555554 1 1234555555 7789999999854222 22222
Q ss_pred ecc---CC----cceEEEEEecCCCCEEEEEc------CCCEEEEEEcCCCceeEEeecc---ccceEEEEEecCCCCeE
Q 021121 102 LHE---HT----REVHSADYNPTRRDSFITSS------WDDTVKLWTVDRPTSVRTFKEH---AYCVYNATWNPRHSDVF 165 (317)
Q Consensus 102 ~~~---~~----~~v~~~~~~~~~~~~l~~~~------~dg~v~iwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l 165 (317)
++. +. ..-..+..-|+|. +++++- ..|-+.++|-++.+........ ...-+.+-|.|. .+.+
T Consensus 118 Ie~~ev~~k~g~s~PHT~Hclp~G~-imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr-~nvM 195 (461)
T PF05694_consen 118 IEPEEVFEKTGLSRPHTVHCLPDGR-IMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPR-HNVM 195 (461)
T ss_dssp E-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETT-TTEE
T ss_pred eCHHHHHhhcCCCCCceeeecCCcc-EEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCC-CCEE
Confidence 221 11 2233455567777 777752 2367888888877777666532 234567888887 6777
Q ss_pred EEEe--------------------CCCeEEEEeCCCCCceeeeccCc--cceEEEEec--CCCCcEEEEEecCCcEEEEE
Q 021121 166 CSAS--------------------GDCTLRIWDVREMGSTMIIPAHE--FEILACDWN--KYDDCLIASASVDKSIKIWD 221 (317)
Q Consensus 166 ~~~~--------------------~dg~i~i~d~~~~~~~~~~~~~~--~~v~~i~~~--~~~~~~l~~~~~d~~i~v~d 221 (317)
++.. ...++.+||+.+.+.++.+.-.+ .....+.|. |....-++.+.-..+|..|-
T Consensus 196 iSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~ 275 (461)
T PF05694_consen 196 ISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFY 275 (461)
T ss_dssp EE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEE
T ss_pred EEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEE
Confidence 7653 24679999999999888876432 234566664 42223344444445555543
Q ss_pred c-cCCCc---cEEEEec-----C------------CCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121 222 V-RNYRV---PIAVLNG-----H------------GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED 270 (317)
Q Consensus 222 ~-~~~~~---~~~~~~~-----~------------~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~ 270 (317)
. ..++- .+..+.. - ..-|+.|..|.|.+.+.++.=..|.|+.||+....
T Consensus 276 k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 276 KDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp E-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred EcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 3 32221 1111111 0 23578999999999766667789999999998865
No 378
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.73 E-value=0.0042 Score=48.47 Aligned_cols=166 Identities=9% Similarity=0.084 Sum_probs=107.1
Q ss_pred eccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccC-ccceEEEEecCCCCcEEEEEecCCcEEEEEccC
Q 021121 146 KEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAH-EFEILACDWNKYDDCLIASASVDKSIKIWDVRN 224 (317)
Q Consensus 146 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~ 224 (317)
.+-...+.++.|+|+ .+.|++..+...-.++=..+|+.+.+++-. -...-.+++.. ++++.++--.++.+.++.+..
T Consensus 82 ~g~~~nvS~LTynp~-~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 82 LGETANVSSLTYNPD-TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred ccccccccceeeCCC-cceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcC
Confidence 344556999999999 666666666666666655677777776521 22345677776 777777777788888887765
Q ss_pred CCcc---------EEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccccee--eeeecc-------cceeEeE
Q 021121 225 YRVP---------IAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALV--GRYDHH-------TEFAVGV 286 (317)
Q Consensus 225 ~~~~---------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~--~~~~~~-------~~~v~~~ 286 (317)
.... +......+...-.++|+|.... |..+-+-.=+.||.+....... .....+ -..|.++
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~-l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHR-LFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCce-EEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 4321 1111122567789999999885 5556666667777765433111 011111 2347788
Q ss_pred EEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121 287 DMSVLVEGLLASTGWDELVYVWQQGMDP 314 (317)
Q Consensus 287 ~~~~~~~~~l~s~~~dg~i~~w~~~~~~ 314 (317)
.|.+..+.+|+-+..++.+.--+...++
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~G~~ 266 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLSGEV 266 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecCCCe
Confidence 8988767788888888888877776654
No 379
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.70 E-value=0.019 Score=51.02 Aligned_cols=187 Identities=12% Similarity=0.056 Sum_probs=102.0
Q ss_pred CcceEEEEEecCCCCEEEEEc-----CCC--EEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeC--------
Q 021121 106 TREVHSADYNPTRRDSFITSS-----WDD--TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASG-------- 170 (317)
Q Consensus 106 ~~~v~~~~~~~~~~~~l~~~~-----~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------- 170 (317)
...+...+++|+|....++.. .|. .|.+++.. +.. ..+... ...+.-.|+|+ +..+++...
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g-~~~t~PsWspD-G~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG-HSLTRPSWSLD-ADAVWVVVDGNTVVRVI 424 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC-CCCCCceECCC-CCceEEEecCcceEEEe
Confidence 346788999999984444441 233 45555542 222 333222 23788899998 554544432
Q ss_pred ----CCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEE---EEccCCCccE----EEEecCCCce
Q 021121 171 ----DCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKI---WDVRNYRVPI----AVLNGHGYAV 239 (317)
Q Consensus 171 ----dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v---~d~~~~~~~~----~~~~~~~~~v 239 (317)
.+.+.+.+++.++... .....|..+.|+| ++..++... ++.|++ -....+...+ .....-...+
T Consensus 425 ~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~ 499 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS---RVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTA 499 (591)
T ss_pred ccCCCceEEEEeccCchhhh---ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence 2334444544433322 2345799999999 888877765 467766 3323332111 1112233346
Q ss_pred eEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeec--ccceeEeEEEEeccCCeEEEeecCCcEE
Q 021121 240 RKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH--HTEFAVGVDMSVLVEGLLASTGWDELVY 306 (317)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~ 306 (317)
.++.|.+++. ++ .+..++.-.+|.+.-.......+.. ...++..++-++. .++....+|.+.
T Consensus 500 ~~l~W~~~~~-L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~---~iyv~~~~g~~~ 563 (591)
T PRK13616 500 VSLDWRTGDS-LV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS---TVYVTDARAVLQ 563 (591)
T ss_pred ccceEecCCE-EE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc---eEEEEcCCceEE
Confidence 8899999987 44 4444554555655433322112122 2456777776652 355556666443
No 380
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.69 E-value=0.00011 Score=38.39 Aligned_cols=37 Identities=32% Similarity=0.601 Sum_probs=31.7
Q ss_pred CceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEE
Q 021121 98 PIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWT 135 (317)
Q Consensus 98 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd 135 (317)
+...+..|...|.++.|.+.+. .+++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 4455667888999999999886 999999999999996
No 381
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.66 E-value=0.025 Score=47.13 Aligned_cols=226 Identities=15% Similarity=0.157 Sum_probs=99.9
Q ss_pred CCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecC-----C---CCeeEEEecCCCCCeEEEEEcC------CeE
Q 021121 20 ESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDT-----A---DGVYDLAWSESHDSLLIAAVAD------GSV 85 (317)
Q Consensus 20 ~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~-----~---~~v~~~~~~~~~~~~l~~~~~d------g~i 85 (317)
+.++++..+-. +++|+|+|+.+.....+.....+. + ..-..+---|+| .+++++-.| |-+
T Consensus 86 ~Rr~Li~PgL~-----SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G-~imIS~lGd~~G~g~Ggf 159 (461)
T PF05694_consen 86 ERRYLILPGLR-----SSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDG-RIMISALGDADGNGPGGF 159 (461)
T ss_dssp -S-EEEEEBTT-----T--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EE
T ss_pred cCCcEEeeeec-----cCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCc-cEEEEeccCCCCCCCCcE
Confidence 45555555532 889999999855432222222211 0 111122223566 466664322 456
Q ss_pred EEEEeCCCCCCCCceeecc---CCcceEEEEEecCCCCEEEEEcC--------------------CCEEEEEEcCCCcee
Q 021121 86 KIYDTALPPTANPIRSLHE---HTREVHSADYNPTRRDSFITSSW--------------------DDTVKLWTVDRPTSV 142 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~--------------------dg~v~iwd~~~~~~~ 142 (317)
.++|-++. +....... ...--..+.|.|..+ .++|... ..++.+||+.+.+.+
T Consensus 160 ~llD~~tf---~v~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~ 235 (461)
T PF05694_consen 160 VLLDGETF---EVKGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLL 235 (461)
T ss_dssp EEE-TTT-----EEEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEE
T ss_pred EEEcCccc---cccceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEe
Confidence 66665432 22222222 223445677788655 7776632 368999999999999
Q ss_pred EEeeccc--cceEEEEEecC--CCCeEEEEeCCCeEEEEeC-CCCC----ceeeeccC-----------------ccceE
Q 021121 143 RTFKEHA--YCVYNATWNPR--HSDVFCSASGDCTLRIWDV-REMG----STMIIPAH-----------------EFEIL 196 (317)
Q Consensus 143 ~~~~~~~--~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~-~~~~----~~~~~~~~-----------------~~~v~ 196 (317)
+++.-.. ..+..+.|..+ ...-++.+...++|..|-- +.++ .+..+... ..-++
T Consensus 236 Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Lit 315 (461)
T PF05694_consen 236 QTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLIT 315 (461)
T ss_dssp EEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-----
T ss_pred eEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceE
Confidence 9887433 34667777654 2234555555666665543 3321 12222110 23368
Q ss_pred EEEecCCCCcEE-EEEecCCcEEEEEccCCCccEEEEe---c---------------CCCceeEEEecCCCCeeEEeee
Q 021121 197 ACDWNKYDDCLI-ASASVDKSIKIWDVRNYRVPIAVLN---G---------------HGYAVRKVKFSPHRRNLLASCS 256 (317)
Q Consensus 197 ~i~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~---~---------------~~~~v~~~~~~~~~~~~l~~~~ 256 (317)
.|..|. +.++| +++-..|.|+.||+.....+...-+ + -.+...-+..|-||+++.+|.|
T Consensus 316 DI~iSl-DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 316 DILISL-DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -EEE-T-TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred eEEEcc-CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 888998 55555 5555789999999998766544321 1 0123356788888987666655
No 382
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.66 E-value=0.02 Score=46.04 Aligned_cols=278 Identities=12% Similarity=0.026 Sum_probs=124.1
Q ss_pred ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecC---CCCeeEEEecCCCCCeEEEEEc
Q 021121 5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDT---ADGVYDLAWSESHDSLLIAAVA 81 (317)
Q Consensus 5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~ 81 (317)
....++.+|.|... +.-+++ +. .|. |+.........+....... .-...++.|..+ ..+++| .
T Consensus 14 ~t~~~l~dV~F~d~-~~G~~V-G~-------~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~--~g~ivG-~ 79 (302)
T PF14870_consen 14 PTDKPLLDVAFVDP-NHGWAV-GA-------YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN--EGWIVG-E 79 (302)
T ss_dssp S-SS-EEEEEESSS-S-EEEE-ET-------TTE--EEEESSTTSS-EE-----S-----EEEEEEEETT--EEEEEE-E
T ss_pred CCCCceEEEEEecC-CEEEEE-ec-------CCE--EEEECCCCccccccccCCCccceeeEEEEEecCC--ceEEEc-C
Confidence 34567889999852 333444 33 343 4555555544443332111 123667777643 345554 4
Q ss_pred CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEE-eeccccceEEEEEecC
Q 021121 82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRT-FKEHAYCVYNATWNPR 160 (317)
Q Consensus 82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~ 160 (317)
.+ +.+...+.++..+.+..-..-.+....+....++. .++ ++..|.|.. ..+.++.-+. .....+.+..+.-+++
T Consensus 80 ~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~-~~l-~~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~d 155 (302)
T PF14870_consen 80 PG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGS-AEL-AGDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSD 155 (302)
T ss_dssp TT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTE-EEE-EETT--EEE-ESSTTSSEEEEE-S----EEEEEE-TT
T ss_pred Cc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCc-EEE-EcCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCC
Confidence 55 33333343433333321111223334444444433 333 344455433 2233433222 2334567888888888
Q ss_pred CCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEE----EecCC
Q 021121 161 HSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAV----LNGHG 236 (317)
Q Consensus 161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~----~~~~~ 236 (317)
+.+++++.....+.-||.-...-...-......+.++.|.| ++.+.+++ ..|.|+.=+.......... .....
T Consensus 156 -G~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~ 232 (302)
T PF14870_consen 156 -GRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNG 232 (302)
T ss_dssp -S-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--
T ss_pred -CcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCCCccccccccCCcccCc
Confidence 78887776666666777543222222223457799999999 77766654 7888888762211111111 11223
Q ss_pred CceeEEEecCCCCeeEEeeecCCeEEEEecccccceeee--eecccceeEeEEEEeccCCeEEEeecCCcEEEE
Q 021121 237 YAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGR--YDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 308 (317)
Q Consensus 237 ~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w 308 (317)
..+..++|.+++. +.++|+ .|.+. .....++.-.+. ...-...++.|.|.+. +.-..-+.+|.|.-|
T Consensus 233 ~~~ld~a~~~~~~-~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~--~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 233 YGILDLAYRPPNE-IWAVGG-SGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNP--DKGFVLGQDGVLLRY 301 (302)
T ss_dssp S-EEEEEESSSS--EEEEES-TT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEET--TEEEEE-STTEEEEE
T ss_pred eeeEEEEecCCCC-EEEEeC-CccEE-EeCCCCccceECccccCCCCceEEEEEcCC--CceEEECCCcEEEEe
Confidence 3578999999876 565554 55443 334444422222 1233456889999874 444455678887655
No 383
>PHA02713 hypothetical protein; Provisional
Probab=97.66 E-value=0.0061 Score=53.94 Aligned_cols=182 Identities=8% Similarity=0.082 Sum_probs=91.1
Q ss_pred CCCCEEEEEcCC------CEEEEEEcCCCcee--EEeeccccceEEEEEecCCCCeEEEEeCCC-----eEEEEeCCCCC
Q 021121 117 TRRDSFITSSWD------DTVKLWTVDRPTSV--RTFKEHAYCVYNATWNPRHSDVFCSASGDC-----TLRIWDVREMG 183 (317)
Q Consensus 117 ~~~~~l~~~~~d------g~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~ 183 (317)
++. +++.|+.+ ..+..||+.+.+-. ..+...........+ ++.+.+.||.++ .+..||..+.+
T Consensus 303 ~~~-IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~---~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 303 DNE-IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI---DDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred CCE-EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE---CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 344 67777753 35778888766321 111111111222222 267777887654 47889987642
Q ss_pred --ceeeeccCccceEEEEecCCCCcEEEEEecCC-----------------------cEEEEEccCCCccEEEEec---C
Q 021121 184 --STMIIPAHEFEILACDWNKYDDCLIASASVDK-----------------------SIKIWDVRNYRVPIAVLNG---H 235 (317)
Q Consensus 184 --~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~-----------------------~i~v~d~~~~~~~~~~~~~---~ 235 (317)
.+..+.........+.. ++.+.+.|+.++ .+..||.++.+- ..... .
T Consensus 379 W~~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W--~~v~~m~~~ 453 (557)
T PHA02713 379 WKMLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW--ETLPNFWTG 453 (557)
T ss_pred EEECCCCCcccccccEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE--eecCCCCcc
Confidence 11122211111112221 677888887652 477788766431 11111 1
Q ss_pred CCceeEEEecCCCCeeEEeeecC------CeEEEEeccc-cc-ceeeeeecccceeEeEEEEeccCCeEEEeecCC--cE
Q 021121 236 GYAVRKVKFSPHRRNLLASCSYD------MTVCLWDFMV-ED-ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDE--LV 305 (317)
Q Consensus 236 ~~~v~~~~~~~~~~~~l~~~~~d------~~i~vwd~~~-~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i 305 (317)
.... +++.. +++ +.+.|+.+ ..+..||..+ .+ ..+..+....... +++.. ++.+.+.||.|| .+
T Consensus 454 r~~~-~~~~~-~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~-~~~~~--~~~iyv~Gg~~~~~~~ 527 (557)
T PHA02713 454 TIRP-GVVSH-KDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL-HTILH--DNTIMMLHCYESYMLQ 527 (557)
T ss_pred cccC-cEEEE-CCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc-eeEEE--CCEEEEEeeecceeeh
Confidence 1111 22222 454 66667654 2467899887 44 1222333222222 22222 277889999888 67
Q ss_pred EEEecCCC
Q 021121 306 YVWQQGMD 313 (317)
Q Consensus 306 ~~w~~~~~ 313 (317)
..||..++
T Consensus 528 e~yd~~~~ 535 (557)
T PHA02713 528 DTFNVYTY 535 (557)
T ss_pred hhcCcccc
Confidence 77777654
No 384
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.65 E-value=0.021 Score=46.14 Aligned_cols=222 Identities=12% Similarity=0.121 Sum_probs=128.4
Q ss_pred EecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee
Q 021121 67 AWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK 146 (317)
Q Consensus 67 ~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 146 (317)
.|.++...++.+--..+.|.-|+..++ ....+. +.+.+.++.....+. .|+++.. -+.+++.+++..+..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g----~~~~~~-~p~~~~~~~~~d~~g-~Lv~~~~--g~~~~~~~~~~~~t~~~ 102 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETG----KKRVFP-SPGGFSSGALIDAGG-RLIACEH--GVRLLDPDTGGKITLLA 102 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcC----ceEEEE-CCCCcccceeecCCC-eEEEEcc--ccEEEeccCCceeEEec
Confidence 577776556667677788888887643 222222 233445544444444 4555543 35566666555433322
Q ss_pred c-----cccceEEEEEecCCCCeEEEEeC-----------CCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEE
Q 021121 147 E-----HAYCVYNATWNPRHSDVFCSASG-----------DCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIAS 210 (317)
Q Consensus 147 ~-----~~~~v~~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~ 210 (317)
. .....+.....|+ +.+.++... -|.|+.+|. .+...+.+..+-...+.++||| +++.+..
T Consensus 103 ~~~~~~~~~r~ND~~v~pd-G~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~Sp-Dg~tly~ 179 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPD-GRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSP-DGKTLYV 179 (307)
T ss_pred cccCCCCcCCCCceeEcCC-CCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECC-CCCEEEE
Confidence 1 1245677888888 555544322 144555554 4555555555455668999999 7765555
Q ss_pred E-ecCCcEEEEEccC--C----CccEEEEecCCCceeEEEecCCCCeeEEeeecCC-eEEEEecccccceeeeeecccce
Q 021121 211 A-SVDKSIKIWDVRN--Y----RVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDM-TVCLWDFMVEDALVGRYDHHTEF 282 (317)
Q Consensus 211 ~-~~d~~i~v~d~~~--~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~vwd~~~~~~~~~~~~~~~~~ 282 (317)
+ +..+.|..|++.. . +..........+..-.++...+|. +-+++..+| .|.+|+.. ++ ++..+.-....
T Consensus 180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd-G~-l~~~i~lP~~~ 256 (307)
T COG3386 180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD-GK-LLGEIKLPVKR 256 (307)
T ss_pred EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCC-Cc-EEEEEECCCCC
Confidence 5 4457888887752 1 111222223445566788888887 343444443 89999987 54 55666666577
Q ss_pred eEeEEEEe-ccCCeEEEeecC
Q 021121 283 AVGVDMSV-LVEGLLASTGWD 302 (317)
Q Consensus 283 v~~~~~~~-~~~~~l~s~~~d 302 (317)
+++++|-- +...+++++...
T Consensus 257 ~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 257 PTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred CccceEeCCCcCEEEEEecCC
Confidence 88888864 323355555544
No 385
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.64 E-value=0.047 Score=49.78 Aligned_cols=154 Identities=8% Similarity=0.191 Sum_probs=101.5
Q ss_pred eEEEEEecCCCCeEEEEeC----------CCeEEEEeCCCCCceeeeccC--ccceEEEEecCCCCcEEEEEecCCcEEE
Q 021121 152 VYNATWNPRHSDVFCSASG----------DCTLRIWDVREMGSTMIIPAH--EFEILACDWNKYDDCLIASASVDKSIKI 219 (317)
Q Consensus 152 v~~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~--~~~v~~i~~~~~~~~~l~~~~~d~~i~v 219 (317)
+.+..|..+.+.++++|+. .|.|.+|.....+.+.....+ ++.+.++.. .+++++|. -+..|++
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~--fngkllA~--In~~vrL 852 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE--FNGKLLAG--INQSVRL 852 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh--hCCeEEEe--cCcEEEE
Confidence 4555577775667777652 578888888774444443322 334444443 35666654 4578999
Q ss_pred EEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccccee--eeeecccceeEeEEEEeccCCeEE
Q 021121 220 WDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALV--GRYDHHTEFAVGVDMSVLVEGLLA 297 (317)
Q Consensus 220 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~ 297 (317)
|+..+.+. ++.-..+..++..+...-.+. .++.|.--+++.+...+..+... ..-.-+....+++.+-. +..++
T Consensus 853 ye~t~~~e-Lr~e~~~~~~~~aL~l~v~gd-eI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~--~d~yl 928 (1096)
T KOG1897|consen 853 YEWTTERE-LRIECNISNPIIALDLQVKGD-EIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILD--DDTYL 928 (1096)
T ss_pred EEccccce-ehhhhcccCCeEEEEEEecCc-EEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEec--CceEE
Confidence 99988653 555566777888888888888 69999988888887766554222 22234566778887775 45666
Q ss_pred EeecCCcEEEEecCCC
Q 021121 298 STGWDELVYVWQQGMD 313 (317)
Q Consensus 298 s~~~dg~i~~w~~~~~ 313 (317)
.+..+|.+.+-..+..
T Consensus 929 gae~~gNlf~v~~d~~ 944 (1096)
T KOG1897|consen 929 GAENSGNLFTVRKDSD 944 (1096)
T ss_pred eecccccEEEEEecCC
Confidence 6667888887766543
No 386
>PHA02713 hypothetical protein; Provisional
Probab=97.63 E-value=0.0082 Score=53.16 Aligned_cols=216 Identities=7% Similarity=0.012 Sum_probs=104.3
Q ss_pred eEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC------CeEEEEEeCCCCCCCCceeeccCCcceEE
Q 021121 38 RVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD------GSVKIYDTALPPTANPIRSLHEHTREVHS 111 (317)
Q Consensus 38 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~v~~~~~~~~~~~~~~~~~~~~~v~~ 111 (317)
.+..||..... ...+........-.+++.. ++ .+.+.|+.+ ..+..||.... .+..+..+....... +
T Consensus 273 ~v~~yd~~~~~--W~~l~~mp~~r~~~~~a~l-~~-~IYviGG~~~~~~~~~~v~~Yd~~~n-~W~~~~~m~~~R~~~-~ 346 (557)
T PHA02713 273 CILVYNINTME--YSVISTIPNHIINYASAIV-DN-EIIIAGGYNFNNPSLNKVYKINIENK-IHVELPPMIKNRCRF-S 346 (557)
T ss_pred CEEEEeCCCCe--EEECCCCCccccceEEEEE-CC-EEEEEcCCCCCCCccceEEEEECCCC-eEeeCCCCcchhhce-e
Confidence 46677776553 2222222221111223332 33 577777753 34677786653 222222222111122 2
Q ss_pred EEEecCCCCEEEEEcCCC-----EEEEEEcCCCceeE--EeeccccceEEEEEecCCCCeEEEEeCCC------------
Q 021121 112 ADYNPTRRDSFITSSWDD-----TVKLWTVDRPTSVR--TFKEHAYCVYNATWNPRHSDVFCSASGDC------------ 172 (317)
Q Consensus 112 ~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------------ 172 (317)
++. -++. +.+.|+.++ .+..||..+.+-.. .+.........+.. ++.+.+.|+.++
T Consensus 347 ~~~-~~g~-IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~ 421 (557)
T PHA02713 347 LAV-IDDT-IYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNS 421 (557)
T ss_pred EEE-ECCE-EEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE---CCEEEEEeCCCccccccccccccc
Confidence 222 2344 677777653 48889987653221 11111111112222 267777777542
Q ss_pred -----------eEEEEeCCCCC--ceeeeccCccceEEEEecCCCCcEEEEEecC------CcEEEEEccC-CCc-cEEE
Q 021121 173 -----------TLRIWDVREMG--STMIIPAHEFEILACDWNKYDDCLIASASVD------KSIKIWDVRN-YRV-PIAV 231 (317)
Q Consensus 173 -----------~i~i~d~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d------~~i~v~d~~~-~~~-~~~~ 231 (317)
.+..||.++.+ .+..+....... +++.. ++.+.+.|+.+ ..+..||..+ .+- .+..
T Consensus 422 ~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~ 498 (557)
T PHA02713 422 IDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT 498 (557)
T ss_pred ccccccccccceEEEECCCCCeEeecCCCCcccccC-cEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc
Confidence 47778877642 122221111111 22222 66777777754 2467898886 331 1122
Q ss_pred EecCCCceeEEEecCCCCeeEEeeecCC--eEEEEeccccc
Q 021121 232 LNGHGYAVRKVKFSPHRRNLLASCSYDM--TVCLWDFMVED 270 (317)
Q Consensus 232 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~vwd~~~~~ 270 (317)
+.........+.+ +++ +.+.|+.++ .+..||..+.+
T Consensus 499 m~~~r~~~~~~~~--~~~-iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 499 TESRLSALHTILH--DNT-IMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred cCcccccceeEEE--CCE-EEEEeeecceeehhhcCccccc
Confidence 2222222222333 454 788999888 78888888766
No 387
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.56 E-value=0.024 Score=50.39 Aligned_cols=188 Identities=12% Similarity=0.063 Sum_probs=99.3
Q ss_pred CCeeEEEecCCCCCeEEEEE-----cCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcC--------
Q 021121 61 DGVYDLAWSESHDSLLIAAV-----ADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW-------- 127 (317)
Q Consensus 61 ~~v~~~~~~~~~~~~l~~~~-----~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------- 127 (317)
..+...+.+|+|+...++.. .|..-.+|-...+.....+ ..+ .....-.|+|+|. .+.+...
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l--t~g--~~~t~PsWspDG~-~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV--LEG--HSLTRPSWSLDAD-AVWVVVDGNTVVRVI 424 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee--ecC--CCCCCceECCCCC-ceEEEecCcceEEEe
Confidence 46788999999965544442 2444455544333222222 222 2377788999977 4444432
Q ss_pred ----CCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEE---EeCCCCCc-e---eeec-cCccce
Q 021121 128 ----DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRI---WDVREMGS-T---MIIP-AHEFEI 195 (317)
Q Consensus 128 ----dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~~-~---~~~~-~~~~~v 195 (317)
.+.+.+.+++.++... ...+.|..+.|+|+ +..++... +|.|++ -....++. + ..+. .....+
T Consensus 425 ~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpD-G~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~ 499 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS---RVPGPISELQLSRD-GVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTA 499 (591)
T ss_pred ccCCCceEEEEeccCchhhh---ccCCCcCeEEECCC-CCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence 2344444554443322 23557999999999 55555444 477777 44334431 1 1122 223336
Q ss_pred EEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec--CCCceeEEEecCCCCeeEEeeecCCeEEE
Q 021121 196 LACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG--HGYAVRKVKFSPHRRNLLASCSYDMTVCL 263 (317)
Q Consensus 196 ~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~~i~v 263 (317)
.++.|.+ ++.++ ++..++.-.+|.+.-.......+.. ...++..++=++. . ++....++.+.+
T Consensus 500 ~~l~W~~-~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-~--iyv~~~~g~~~l 564 (591)
T PRK13616 500 VSLDWRT-GDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-T--VYVTDARAVLQL 564 (591)
T ss_pred ccceEec-CCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-e--EEEEcCCceEEe
Confidence 8899998 77654 5555554445544322211111122 2456777777763 2 444455664443
No 388
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.56 E-value=0.02 Score=43.29 Aligned_cols=143 Identities=7% Similarity=0.077 Sum_probs=91.8
Q ss_pred CCCeeEEEecCCCCCeEEEEEc----------CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCC
Q 021121 60 ADGVYDLAWSESHDSLLIAAVA----------DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD 129 (317)
Q Consensus 60 ~~~v~~~~~~~~~~~~l~~~~~----------dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 129 (317)
+...+.-..+|+|. + ..|.. .|.++.|-.. ..+..+...-.--+.++|+.+.+.+.++-+.+-
T Consensus 108 knR~NDgkvdP~Gr-y-y~GtMad~~~~le~~~g~Ly~~~~~-----h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~ 180 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR-Y-YGGTMADFGDDLEPIGGELYSWLAG-----HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNY 180 (310)
T ss_pred hcccccCccCCCCc-e-eeeeeccccccccccccEEEEeccC-----CCceeeehhccCCccccccccCcEEEEEccCce
Confidence 44566777889984 4 33332 2445555433 222222233344467899988876777778888
Q ss_pred EEEEEE--cCCCc-----eeEEeec----cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEE
Q 021121 130 TVKLWT--VDRPT-----SVRTFKE----HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILAC 198 (317)
Q Consensus 130 ~v~iwd--~~~~~-----~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i 198 (317)
+|.-|| ..+|. .+..++. ..-..-.++.... +++.+++-..++|...|+.+++.+..++-....++|+
T Consensus 181 ~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~e-G~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsc 259 (310)
T KOG4499|consen 181 EVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTE-GNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSC 259 (310)
T ss_pred EEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccC-CcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEE
Confidence 998888 55553 2223321 1112233444544 8899999999999999999999999998888899999
Q ss_pred EecCCCCcEEEE
Q 021121 199 DWNKYDDCLIAS 210 (317)
Q Consensus 199 ~~~~~~~~~l~~ 210 (317)
+|--.+-..+.+
T Consensus 260 cFgGkn~d~~yv 271 (310)
T KOG4499|consen 260 CFGGKNLDILYV 271 (310)
T ss_pred EecCCCccEEEE
Confidence 997533334443
No 389
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.49 E-value=0.035 Score=44.51 Aligned_cols=218 Identities=13% Similarity=0.086 Sum_probs=120.5
Q ss_pred CeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEe--------
Q 021121 74 SLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTF-------- 145 (317)
Q Consensus 74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-------- 145 (317)
..|+.|+.+| +.+++.... ....... +...|..+...|+-+ .+++-+ |+.+.++++..-......
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~--~~~~~i~--~~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDP--SKPTRIL--KLSSITQLSVLPELN-LLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred CEEEEEECCC-EEEEEecCC--ccceeEe--ecceEEEEEEecccC-EEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 5888999998 899998322 1222222 233499999998876 555554 599999998765433311
Q ss_pred ------eccccceEEEE-EecCCCCeEEEEeCCCeEEEEeCCCC-----CceeeeccCccceEEEEecCCCCcEEEEEec
Q 021121 146 ------KEHAYCVYNAT-WNPRHSDVFCSASGDCTLRIWDVREM-----GSTMIIPAHEFEILACDWNKYDDCLIASASV 213 (317)
Q Consensus 146 ------~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~ 213 (317)
......+...+ -....+...+.......|.+|..... +..+.+. ....+.+++|.+ +.++.|..
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~---~~i~v~~~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLG---NKICVGTS 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeC---CEEEEEeC
Confidence 11122344444 11222333344445558888887653 2334444 346788899873 45666664
Q ss_pred CCcEEEEEccCCCccEEEEec------------CCCceeEEEecCCCCeeEEeeecCCeEEEEeccccccee-eeeeccc
Q 021121 214 DKSIKIWDVRNYRVPIAVLNG------------HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALV-GRYDHHT 280 (317)
Q Consensus 214 d~~i~v~d~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~-~~~~~~~ 280 (317)
....+.|+.++.. ...+.. ...++..+... ++. +|++. |..-.+.|. .++... ..+.- .
T Consensus 157 -~~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e-~Ll~~--~~~g~fv~~-~G~~~r~~~i~W-~ 228 (275)
T PF00780_consen 157 -KGFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNE-FLLCY--DNIGVFVNK-NGEPSRKSTIQW-S 228 (275)
T ss_pred -CceEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEEeC-Cce-EEEEe--cceEEEEcC-CCCcCcccEEEc-C
Confidence 4588999986542 222211 11234334443 344 56543 333334443 333222 22332 2
Q ss_pred ceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121 281 EFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP 314 (317)
Q Consensus 281 ~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~ 314 (317)
....++++. ..+|++.+. +.|.||++...+
T Consensus 229 ~~p~~~~~~---~pyli~~~~-~~iEV~~~~~~~ 258 (275)
T PF00780_consen 229 SAPQSVAYS---SPYLIAFSS-NSIEVRSLETGE 258 (275)
T ss_pred CchhEEEEE---CCEEEEECC-CEEEEEECcCCc
Confidence 345667775 346666655 459999998763
No 390
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.42 E-value=0.00085 Score=37.02 Aligned_cols=33 Identities=24% Similarity=0.493 Sum_probs=29.2
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeC
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTA 91 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~ 91 (317)
.....|.+++|+|..+ ++|.|+.+|.|.+++++
T Consensus 9 ~l~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMD-LIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCCcEEEEEECCCCC-EEEEEECCCeEEEEECC
Confidence 4566799999999984 99999999999999984
No 391
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.42 E-value=0.039 Score=43.31 Aligned_cols=162 Identities=15% Similarity=0.221 Sum_probs=102.8
Q ss_pred cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeecc-CCcceEEEEEecCCCCEEEEEcCCCEEEEEEc
Q 021121 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHE-HTREVHSADYNPTRRDSFITSSWDDTVKLWTV 136 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~ 136 (317)
+....+.++.|+|+.+ .|++..+...-.|+=...+ ..+..+.- .-.....+.+..++. ++++--.++.+.++.+
T Consensus 83 g~~~nvS~LTynp~~r-tLFav~n~p~~iVElt~~G---dlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~v 157 (316)
T COG3204 83 GETANVSSLTYNPDTR-TLFAVTNKPAAIVELTKEG---DLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTV 157 (316)
T ss_pred cccccccceeeCCCcc-eEEEecCCCceEEEEecCC---ceEEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEE
Confidence 3445599999999985 5555544554444433333 44444321 123345577877766 7777777888988887
Q ss_pred CCCceeEEe----------eccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec---cC-------ccceE
Q 021121 137 DRPTSVRTF----------KEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP---AH-------EFEIL 196 (317)
Q Consensus 137 ~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~-------~~~v~ 196 (317)
......... ...+.....++|.|. ...|..+-+..-+.||............ .+ -..+.
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~-~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS 236 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPV-DHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS 236 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCC-CceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence 665322211 112456889999999 6667677777777777766433111111 11 23467
Q ss_pred EEEecCCCCcEEEEEecCCcEEEEEccCC
Q 021121 197 ACDWNKYDDCLIASASVDKSIKIWDVRNY 225 (317)
Q Consensus 197 ~i~~~~~~~~~l~~~~~d~~i~v~d~~~~ 225 (317)
++.|++..+.+++-+.+++.+.-.|....
T Consensus 237 gl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 237 GLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cceecCCCCcEEEEecCCceEEEEecCCC
Confidence 88899878889999999998888887653
No 392
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.40 E-value=0.081 Score=46.61 Aligned_cols=56 Identities=5% Similarity=-0.060 Sum_probs=39.1
Q ss_pred EEEEEEcCCCceeEEeeccccce---------EEEEEecCCC--CeEEEEeCCCeEEEEeCCCCCce
Q 021121 130 TVKLWTVDRPTSVRTFKEHAYCV---------YNATWNPRHS--DVFCSASGDCTLRIWDVREMGST 185 (317)
Q Consensus 130 ~v~iwd~~~~~~~~~~~~~~~~v---------~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~ 185 (317)
+|.-.|+++++..-.++.....+ .-+....++. ..++.+.++|.+++.|.++++.+
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 68888999999888776432211 2222223422 37889999999999999998875
No 393
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.0011 Score=60.06 Aligned_cols=104 Identities=16% Similarity=0.160 Sum_probs=76.0
Q ss_pred CCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeeccccee
Q 021121 204 DDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFA 283 (317)
Q Consensus 204 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v 283 (317)
.+..++.|+..|.+-.+|....-.+...-..-.++|++++|+.+|+ +++.|-.+|.|.+||+..++ +.+.+..|..+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k-~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAK-ILKVITEHGAPV 175 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCc-ceeeeeecCCcc
Confidence 4557888999999999998874333333334467999999999998 78889999999999999876 556666666655
Q ss_pred EeEEE---EeccCCeEEEeecCCcEEEEecCC
Q 021121 284 VGVDM---SVLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 284 ~~~~~---~~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
+++-+ ..+ ...++++...|. +|++.-
T Consensus 176 t~vi~v~~t~~-nS~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 176 TGVIFVGRTSQ-NSKLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred ceEEEEEEeCC-CcEEEEccCCCc--eEEEEe
Confidence 55533 333 346888887776 677643
No 394
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.36 E-value=0.00042 Score=51.69 Aligned_cols=104 Identities=13% Similarity=0.140 Sum_probs=62.8
Q ss_pred CeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccc-cce
Q 021121 74 SLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHA-YCV 152 (317)
Q Consensus 74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v 152 (317)
.-+++|+.+|.|.+|+..... .....+..-...|.++--.-+...+..+++.||.|+.|++.-.+.+.....|. .++
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g--~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEG--AHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred ceEEeecccceEEEecCCccc--hHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 578999999999999976321 11111222233343333222222388999999999999998887777666666 344
Q ss_pred EEEEEecCCCCeEEEE--eCCCeEEEEeCC
Q 021121 153 YNATWNPRHSDVFCSA--SGDCTLRIWDVR 180 (317)
Q Consensus 153 ~~~~~~~~~~~~l~~~--~~dg~i~i~d~~ 180 (317)
..+..... ...++.+ +.|..++.|++.
T Consensus 149 e~~ivv~s-d~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 149 EELIVVGS-DEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceeEEecC-CceEEeeccccchhhhhcchh
Confidence 44443333 3444444 555556666654
No 395
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.33 E-value=0.052 Score=42.85 Aligned_cols=146 Identities=10% Similarity=-0.001 Sum_probs=83.2
Q ss_pred ceEEEEEecCCCCeEEEEe--CCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEE-ccCCCc
Q 021121 151 CVYNATWNPRHSDVFCSAS--GDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWD-VRNYRV 227 (317)
Q Consensus 151 ~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d-~~~~~~ 227 (317)
.+.+.++++++..+.++.. ....++++.. +....... ....+..-.|++ ++...+....+...+++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcc
Confidence 6889999999444444442 3344555543 33333332 233678889999 677777766666666663 233332
Q ss_pred cEEEEecC--CCceeEEEecCCCCeeEEee--ecCCeEEEEeccccc--------ceeeeeecccceeEeEEEEeccCCe
Q 021121 228 PIAVLNGH--GYAVRKVKFSPHRRNLLASC--SYDMTVCLWDFMVED--------ALVGRYDHHTEFAVGVDMSVLVEGL 295 (317)
Q Consensus 228 ~~~~~~~~--~~~v~~~~~~~~~~~~l~~~--~~d~~i~vwd~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~ 295 (317)
........ ...|+.+.+||||.++.+.. ..++.|.+--+.... ............+++++|.++ ..+
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~-~~L 179 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD-STL 179 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC-CEE
Confidence 22222221 12899999999999754444 235667665443221 111222233457899999997 555
Q ss_pred EEEeec
Q 021121 296 LASTGW 301 (317)
Q Consensus 296 l~s~~~ 301 (317)
++.+..
T Consensus 180 ~V~~~~ 185 (253)
T PF10647_consen 180 VVLGRS 185 (253)
T ss_pred EEEeCC
Confidence 555443
No 396
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.30 E-value=0.082 Score=44.55 Aligned_cols=79 Identities=18% Similarity=0.116 Sum_probs=50.7
Q ss_pred CCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccce-eEeEEEEecc----------------CC-eEE
Q 021121 236 GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEF-AVGVDMSVLV----------------EG-LLA 297 (317)
Q Consensus 236 ~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~----------------~~-~l~ 297 (317)
...+.+++.+|.++ +.++...=|.|.++|+.++. .++..++-++. +.-+...... .. +++
T Consensus 307 ~R~~~~i~~sP~~~-laA~tDslGRV~LiD~~~~~-vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 307 KREGESICLSPSGR-LAAVTDSLGRVLLIDVARGI-VVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred CceEEEEEECCCCC-EEEEEcCCCcEEEEECCCCh-hhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 34678899999987 78887778999999998875 44444443321 1101000000 01 334
Q ss_pred EeecCCcEEEEecCCCCCC
Q 021121 298 STGWDELVYVWQQGMDPRA 316 (317)
Q Consensus 298 s~~~dg~i~~w~~~~~~~~ 316 (317)
-+-.-|.|.||.+...+|.
T Consensus 385 yaprRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRV 403 (415)
T ss_pred EeccCCeEEEEecCCCCEE
Confidence 4557899999999988874
No 397
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.28 E-value=0.14 Score=46.86 Aligned_cols=266 Identities=12% Similarity=0.050 Sum_probs=136.6
Q ss_pred CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCC--CCC---eEEEEEcCCeEEEEEeCCCCCCCCcee--e--ccCC
Q 021121 36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSES--HDS---LLIAAVADGSVKIYDTALPPTANPIRS--L--HEHT 106 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~---~l~~~~~dg~i~v~~~~~~~~~~~~~~--~--~~~~ 106 (317)
++.+...++.... +.+.........|.|+.++|- +++ ++++|..+..+.+.-..... ..+.. + ..-.
T Consensus 508 ~~~l~y~~i~~~~--l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~--~~~~~~~l~~~~iP 583 (1096)
T KOG1897|consen 508 GLALFYLEIEDGG--LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDL--ILITHEQLSGEIIP 583 (1096)
T ss_pred ccEEEEEEeeccc--eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCc--ceeeeeccCCCccc
Confidence 4456666665554 444444455678999999975 445 88999888777666544321 11111 1 1223
Q ss_pred cceEEEEEecCCCCEEEEEcCCCEEEEEEcCC--CceeEE--eeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC
Q 021121 107 REVHSADYNPTRRDSFITSSWDDTVKLWTVDR--PTSVRT--FKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM 182 (317)
Q Consensus 107 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~--~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 182 (317)
..|.-.++-.+.. +|+++..||.+..+.+.. ++.-.. ..-...|+.--.|+..+...+++++ |.-..+|..+ +
T Consensus 584 RSIl~~~~e~d~~-yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s-drP~viY~~n-~ 660 (1096)
T KOG1897|consen 584 RSILLTTFEGDIH-YLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS-DRPTVIYSSN-G 660 (1096)
T ss_pred hheeeEEeeccce-EEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC-CCCEEEEecC-C
Confidence 4455556665554 999999999998775543 322111 1223445665666666455554444 4444455533 2
Q ss_pred CceeeeccCccceEE-EEec-CCCCcEEEEEecCCcEEEEEccCCCc-cEEEEecCCCceeEEEecCCCCeeEEeeec--
Q 021121 183 GSTMIIPAHEFEILA-CDWN-KYDDCLIASASVDKSIKIWDVRNYRV-PIAVLNGHGYAVRKVKFSPHRRNLLASCSY-- 257 (317)
Q Consensus 183 ~~~~~~~~~~~~v~~-i~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-- 257 (317)
+...+--.. ..+.. +.|+ +.-+..++.+. .+.+++.-+..-+. -.++.. -....+.+++.+... ++.+.+.
T Consensus 661 kLv~spls~-kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl-~~~v~s~r~ 736 (1096)
T KOG1897|consen 661 KLVYSPLSL-KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSL-TFGVLSNRI 736 (1096)
T ss_pred cEEEeccch-HHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeec-CCCChhheEecccce-EEEEEeccc
Confidence 222111000 11111 1122 11233455544 45677776654332 233333 334667888887443 3333331
Q ss_pred ---------C---CeEEEEecccccceeeeeecccc---eeEeEEEEeccCCeEEEeec----------CCcEEEEecCC
Q 021121 258 ---------D---MTVCLWDFMVEDALVGRYDHHTE---FAVGVDMSVLVEGLLASTGW----------DELVYVWQQGM 312 (317)
Q Consensus 258 ---------d---~~i~vwd~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~~~----------dg~i~~w~~~~ 312 (317)
. ..++++|-.+-+.+......... .+.++.|..+.+.+++.|.. .|.|.++.+..
T Consensus 737 e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e 816 (1096)
T KOG1897|consen 737 ESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE 816 (1096)
T ss_pred ccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec
Confidence 1 13566665554422111111122 34455587774556666652 57788888766
No 398
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.0086 Score=55.08 Aligned_cols=143 Identities=13% Similarity=0.110 Sum_probs=92.6
Q ss_pred ceEEEEEecCCCCEEEE-EcCCCEEEEEEcCCCceeE-----------EeeccccceEEEEEecCCCCeEEEEeCCCeEE
Q 021121 108 EVHSADYNPTRRDSFIT-SSWDDTVKLWTVDRPTSVR-----------TFKEHAYCVYNATWNPRHSDVFCSASGDCTLR 175 (317)
Q Consensus 108 ~v~~~~~~~~~~~~l~~-~~~dg~v~iwd~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 175 (317)
++..+...+|+....+. .+.+-.|..||+++-..-. ..........++.|+|.-....+++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45556666675533333 3334478899997532111 11122345678899998777788889999999
Q ss_pred EEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec----CCCceeEEEecCCCCee
Q 021121 176 IWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG----HGYAVRKVKFSPHRRNL 251 (317)
Q Consensus 176 i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~ 251 (317)
+..+........--......++++|+| .|..++.|-..|++.-|...-.. ...+.+ ....|.+++|-.... +
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~lei--k~~ip~Pp~~e~yrvl~v~Wl~t~e-f 257 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSLEI--KSEIPEPPVEENYRVLSVTWLSTQE-F 257 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEeecccce--eecccCCCcCCCcceeEEEEeccee-E
Confidence 988765433332223456789999999 99999999999999988754321 111111 146789999987766 4
Q ss_pred EEe
Q 021121 252 LAS 254 (317)
Q Consensus 252 l~~ 254 (317)
++.
T Consensus 258 lvv 260 (1405)
T KOG3630|consen 258 LVV 260 (1405)
T ss_pred EEE
Confidence 443
No 399
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.20 E-value=0.14 Score=45.16 Aligned_cols=145 Identities=12% Similarity=0.107 Sum_probs=84.2
Q ss_pred eEEEEEcCCeEEEEEeCCCCCCCCceeec--cCC--cceEE-EEEecCCCCEEEEEc------CCCEEEEEEcCCCceeE
Q 021121 75 LLIAAVADGSVKIYDTALPPTANPIRSLH--EHT--REVHS-ADYNPTRRDSFITSS------WDDTVKLWTVDRPTSVR 143 (317)
Q Consensus 75 ~l~~~~~dg~i~v~~~~~~~~~~~~~~~~--~~~--~~v~~-~~~~~~~~~~l~~~~------~dg~v~iwd~~~~~~~~ 143 (317)
.++.++.++.+.-+|.+++ +.+.... .+. ..+.+ -... ++ .++.+. .+|.|..+|.++++.+-
T Consensus 122 ~v~v~t~dg~l~ALDa~TG---k~~W~~~~~~~~~~~~~tssP~v~-~g--~Vivg~~~~~~~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTG---KVVWSKKNGDYKAGYTITAAPLVV-KG--KVITGISGGEFGVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred EEEEEcCCCEEEEEECCCC---CEEeecccccccccccccCCcEEE-CC--EEEEeecccccCCCcEEEEEECCCCceeE
Confidence 5677788999999998776 3333222 111 11111 1111 23 455543 26899999999998776
Q ss_pred Eeecccc-------------------------------ce-EEEEEecCCCCeEEEEeCC-----C-----------eEE
Q 021121 144 TFKEHAY-------------------------------CV-YNATWNPRHSDVFCSASGD-----C-----------TLR 175 (317)
Q Consensus 144 ~~~~~~~-------------------------------~v-~~~~~~~~~~~~l~~~~~d-----g-----------~i~ 175 (317)
.+..-.. .+ ..+++.|. ..+++.+..+ + .|.
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~-~~lvy~~tGnp~p~~~~~r~gdnl~~~s~v 274 (527)
T TIGR03075 196 RRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPE-TNLIYFGTGNPSPWNSHLRPGDNLYTSSIV 274 (527)
T ss_pred eccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCC-CCeEEEeCCCCCCCCCCCCCCCCccceeEE
Confidence 6532111 11 12355665 4555555421 2 577
Q ss_pred EEeCCCCCceeeeccCccc---------eEEEEecCCCCc---EEEEEecCCcEEEEEccCCCc
Q 021121 176 IWDVREMGSTMIIPAHEFE---------ILACDWNKYDDC---LIASASVDKSIKIWDVRNYRV 227 (317)
Q Consensus 176 i~d~~~~~~~~~~~~~~~~---------v~~i~~~~~~~~---~l~~~~~d~~i~v~d~~~~~~ 227 (317)
-.|+++++..-.++..... ..-+.... +++ .++.+..+|.+++.|.++++.
T Consensus 275 Ald~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~-~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 275 ARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKK-DGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEccccCCEEEeeeCCCCCCccccCCCCcEEEEecc-CCcEEEEEEEeCCCceEEEEECCCCce
Confidence 7788888887666532211 11222222 444 788999999999999988764
No 400
>PRK10115 protease 2; Provisional
Probab=97.15 E-value=0.19 Score=45.91 Aligned_cols=240 Identities=9% Similarity=0.020 Sum_probs=117.4
Q ss_pred CeeEEEecCCCCCeEEEEEc-C----CeEEEEEeCCCCCCCCce-eeccCCcceEEEEEecCCCCEEEEEcCC-----CE
Q 021121 62 GVYDLAWSESHDSLLIAAVA-D----GSVKIYDTALPPTANPIR-SLHEHTREVHSADYNPTRRDSFITSSWD-----DT 130 (317)
Q Consensus 62 ~v~~~~~~~~~~~~l~~~~~-d----g~i~v~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~ 130 (317)
.+..+.|+|+++ +|+.+.. + ..|++.|+.++ ..+. .+.. .. ..++|.+++..++++...+ ..
T Consensus 128 ~l~~~~~Spdg~-~la~~~d~~G~E~~~l~v~d~~tg---~~l~~~i~~-~~--~~~~w~~D~~~~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 128 TLGGMAITPDNT-IMALAEDFLSRRQYGIRFRNLETG---NWYPELLDN-VE--PSFVWANDSWTFYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEeEEEECCCCC-EEEEEecCCCcEEEEEEEEECCCC---CCCCccccC-cc--eEEEEeeCCCEEEEEEecCCCCCCCE
Confidence 367788999985 5555432 2 35778888754 2221 1111 11 4589999987455554322 47
Q ss_pred EEEEEcCCC--ceeEEeeccccceEEEEEecCCCCeEEEEeC---CCeEEEEeCC--CCCceeeeccCccceEEEEecCC
Q 021121 131 VKLWTVDRP--TSVRTFKEHAYCVYNATWNPRHSDVFCSASG---DCTLRIWDVR--EMGSTMIIPAHEFEILACDWNKY 203 (317)
Q Consensus 131 v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~--~~~~~~~~~~~~~~v~~i~~~~~ 203 (317)
|+.+++.++ +....+........-..+.+.++..++..+. ++.+.+++.. .++....+.........+. +.
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 278 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY- 278 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC-
Confidence 888898887 3333444333333323333422554444332 4578888853 3332222322222223332 32
Q ss_pred CCcEEEEEecC-C--cEEEEEccCCCccEEEEecC-C-CceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeee-
Q 021121 204 DDCLIASASVD-K--SIKIWDVRNYRVPIAVLNGH-G-YAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYD- 277 (317)
Q Consensus 204 ~~~~l~~~~~d-~--~i~v~d~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~- 277 (317)
.+.+++....+ . .|...++..... ...+..+ . ..+..+.+. +++++++...+|.-+++-+.........+.
T Consensus 279 ~~~ly~~tn~~~~~~~l~~~~~~~~~~-~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~ 355 (686)
T PRK10115 279 QHRFYLRSNRHGKNFGLYRTRVRDEQQ-WEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKTREVIGIAF 355 (686)
T ss_pred CCEEEEEEcCCCCCceEEEecCCCccc-CeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCCCceEEecC
Confidence 33333333222 2 344444442222 2333344 2 367888887 335788888888766655443211222222
Q ss_pred cccceeEeEEEE--eccCCeEEEee---cCCcEEEEecCCC
Q 021121 278 HHTEFAVGVDMS--VLVEGLLASTG---WDELVYVWQQGMD 313 (317)
Q Consensus 278 ~~~~~v~~~~~~--~~~~~~l~s~~---~dg~i~~w~~~~~ 313 (317)
.....+..+.++ ++.+.++++.+ .-+.+..+|+.+.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 356 DDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 222223333344 33233444433 3466777776543
No 401
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.15 E-value=0.068 Score=40.54 Aligned_cols=149 Identities=13% Similarity=0.145 Sum_probs=90.9
Q ss_pred EEEecCCCCeEEEEEeccccc---ccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEE
Q 021121 13 VKFSPFYESRLAVATAQNFGI---LGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYD 89 (317)
Q Consensus 13 ~~~~p~~~~~~~~~~~~~~~~---~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~ 89 (317)
-..+| ++++.+++...++. ...|.++.|-....- . ..+..-.--+.++|..+...+..+-+.+-+|.-||
T Consensus 114 gkvdP--~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v---~--~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 114 GKVDP--DGRYYGGTMADFGDDLEPIGGELYSWLAGHQV---E--LIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred CccCC--CCceeeeeeccccccccccccEEEEeccCCCc---e--eeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence 34556 67886666554322 234667777654321 1 11122333467899987766666777777887788
Q ss_pred eC--CCCCC--CCceeecc----CCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCC
Q 021121 90 TA--LPPTA--NPIRSLHE----HTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRH 161 (317)
Q Consensus 90 ~~--~~~~~--~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (317)
.+ ++.-. +.+..++. ....--.++...+|. +.++.-..|+|...|+.+|+.+.+++-....+++++|--.+
T Consensus 187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn 265 (310)
T KOG4499|consen 187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKN 265 (310)
T ss_pred cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCC
Confidence 43 33211 12222221 111122345555676 77777778999999999999999999889999999997543
Q ss_pred CCeEEEEe
Q 021121 162 SDVFCSAS 169 (317)
Q Consensus 162 ~~~l~~~~ 169 (317)
-.++++..
T Consensus 266 ~d~~yvT~ 273 (310)
T KOG4499|consen 266 LDILYVTT 273 (310)
T ss_pred ccEEEEEe
Confidence 45555543
No 402
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.11 E-value=0.0026 Score=35.10 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=29.5
Q ss_pred CcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce
Q 021121 106 TREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS 141 (317)
Q Consensus 106 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 141 (317)
...|.+++|+|... +++.++.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 45799999999988 9999999999999998 4443
No 403
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.09 E-value=0.16 Score=43.93 Aligned_cols=123 Identities=14% Similarity=0.193 Sum_probs=73.0
Q ss_pred ecCCCCeeEEEecCC----CCCeEEEEEcCCeEEEEEeCCC--CCCCCceeeccC-Cc----ceEEEEEecCCCCEEEEE
Q 021121 57 FDTADGVYDLAWSES----HDSLLIAAVADGSVKIYDTALP--PTANPIRSLHEH-TR----EVHSADYNPTRRDSFITS 125 (317)
Q Consensus 57 ~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~v~~~~~~--~~~~~~~~~~~~-~~----~v~~~~~~~~~~~~l~~~ 125 (317)
.+.-+.|..+.|.|- .+.+| +......|.||.+... +..+.+..-..+ .+ --..+-|+|... .|++-
T Consensus 53 iGqFEhV~GlsW~P~~~~~~paLL-AVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VL 130 (671)
T PF15390_consen 53 IGQFEHVHGLSWAPPCTADTPALL-AVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVL 130 (671)
T ss_pred eeccceeeeeeecCcccCCCCceE-EEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEE
Confidence 344456999999985 33344 4456788999998632 122222221111 11 123567999877 66555
Q ss_pred cCCCEEEEEEcCCC--ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC
Q 021121 126 SWDDTVKLWTVDRP--TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM 182 (317)
Q Consensus 126 ~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 182 (317)
.....-.++++... .....+ ...+.|.|.+|.+|+.+++++.+..=.-++||-...
T Consensus 131 T~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 131 TARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred ecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 54444445555433 222233 356789999999996666666666667789986543
No 404
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.01 E-value=0.13 Score=41.45 Aligned_cols=230 Identities=11% Similarity=0.116 Sum_probs=105.6
Q ss_pred cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeee-cCCCCeeEEEecCCCCCeEEEEEcCCeEE
Q 021121 8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAF-DTADGVYDLAWSESHDSLLIAAVADGSVK 86 (317)
Q Consensus 8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 86 (317)
....++.|.. +..+++ +. .| + ++...........+..- ..+.....+....++ .....+..|.
T Consensus 62 ~~l~~I~f~~--~~g~iv-G~-------~g-~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~--~~~l~~~~G~-- 125 (302)
T PF14870_consen 62 YHLNSISFDG--NEGWIV-GE-------PG-L-LLHTTDGGKTWERVPLSSKLPGSPFGITALGDG--SAELAGDRGA-- 125 (302)
T ss_dssp -EEEEEEEET--TEEEEE-EE-------TT-E-EEEESSTTSS-EE----TT-SS-EEEEEEEETT--EEEEEETT----
T ss_pred eeEEEEEecC--CceEEE-cC-------Cc-e-EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCC--cEEEEcCCCc--
Confidence 3466777765 444443 33 33 3 33344444334443321 122333444444333 3333445554
Q ss_pred EEEeCCCC-CCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121 87 IYDTALPP-TANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF 165 (317)
Q Consensus 87 v~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 165 (317)
||....+. ..+. ....-.+.+..+.-+++|. +++++..-....-||.-...-...-+....+|..+.|.|+ +.+.
T Consensus 126 iy~T~DgG~tW~~--~~~~~~gs~~~~~r~~dG~-~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~-~~lw 201 (302)
T PF14870_consen 126 IYRTTDGGKTWQA--VVSETSGSINDITRSSDGR-YVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPD-GNLW 201 (302)
T ss_dssp EEEESSTTSSEEE--EE-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TT-S-EE
T ss_pred EEEeCCCCCCeeE--cccCCcceeEeEEECCCCc-EEEEECcccEEEEecCCCccceEEccCccceehhceecCC-CCEE
Confidence 45444332 2222 1234457788888899998 7777776556667875433222223335678999999998 6665
Q ss_pred EEEeCCCeEEEEeCC-CCCce----eeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe---cCCC
Q 021121 166 CSASGDCTLRIWDVR-EMGST----MIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN---GHGY 237 (317)
Q Consensus 166 ~~~~~dg~i~i~d~~-~~~~~----~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~ 237 (317)
+. ...|.|+.=+.. ..+.- ..+....-.+..++|.+ +....++|+ .|.+ +.....++. -+... .-..
T Consensus 202 ~~-~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg-~G~l-~~S~DgGkt-W~~~~~~~~~~~ 276 (302)
T PF14870_consen 202 ML-ARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGG-SGTL-LVSTDGGKT-WQKDRVGENVPS 276 (302)
T ss_dssp EE-ETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS-SS-EEEEES-TT-E-EEESSTTSS--EE-GGGTTSSS
T ss_pred EE-eCCcEEEEccCCCCccccccccCCcccCceeeEEEEecC-CCCEEEEeC-CccE-EEeCCCCcc-ceECccccCCCC
Confidence 54 488999887722 11111 11112233478999998 676666655 4544 344444443 33322 2244
Q ss_pred ceeEEEecCCCCeeEEeeecCCeEEEE
Q 021121 238 AVRKVKFSPHRRNLLASCSYDMTVCLW 264 (317)
Q Consensus 238 ~v~~~~~~~~~~~~l~~~~~d~~i~vw 264 (317)
..+.+.|.+..+ -++. +.+|.+--|
T Consensus 277 n~~~i~f~~~~~-gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 277 NLYRIVFVNPDK-GFVL-GQDGVLLRY 301 (302)
T ss_dssp ---EEEEEETTE-EEEE--STTEEEEE
T ss_pred ceEEEEEcCCCc-eEEE-CCCcEEEEe
Confidence 678899976655 3444 567876544
No 405
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.97 E-value=0.12 Score=40.44 Aligned_cols=236 Identities=12% Similarity=0.136 Sum_probs=128.4
Q ss_pred CCCCeeEEEecCCCCCeEEEEEcCCe-EEEEEeCCCCCCCCce-----eeccCCcceEEEEEecCCCCEEEEEcC-----
Q 021121 59 TADGVYDLAWSESHDSLLIAAVADGS-VKIYDTALPPTANPIR-----SLHEHTREVHSADYNPTRRDSFITSSW----- 127 (317)
Q Consensus 59 ~~~~v~~~~~~~~~~~~l~~~~~dg~-i~v~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~~~~~----- 127 (317)
-+..-..|+|+|..+.-++.+-.-|+ ..++|.........+. .+.+| =.|+|+|. +|++.-.
T Consensus 66 lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGH------Gvfs~dG~-~LYATEndfd~~ 138 (366)
T COG3490 66 LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGH------GVFSPDGR-LLYATENDFDPN 138 (366)
T ss_pred cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecc------cccCCCCc-EEEeecCCCCCC
Confidence 34455678899987777777766665 5577876552222111 12233 35999998 6665533
Q ss_pred CCEEEEEEcCCC-ceeEEeeccccceEEEEEecCCCCeEEEEeC------------------CCeEEEEeCCCCCceeee
Q 021121 128 DDTVKLWTVDRP-TSVRTFKEHAYCVYNATWNPRHSDVFCSASG------------------DCTLRIWDVREMGSTMII 188 (317)
Q Consensus 128 dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~~ 188 (317)
.|.|-+||.+.+ +.+.++..|.-....+.|.+| +..++.+.. .-++.+.|..+++.+.+.
T Consensus 139 rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~D-GrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh 217 (366)
T COG3490 139 RGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMAD-GRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKH 217 (366)
T ss_pred CceEEEEecccccceecccccCCcCcceeEEecC-CcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhc
Confidence 378999999854 556677777777889999999 666665432 011223333333332221
Q ss_pred --c--cCccceEEEEecCCCCcEEEEEecCCcE----EEEEccCCCccEEEEec-------CCCceeEEEecCCCCeeEE
Q 021121 189 --P--AHEFEILACDWNKYDDCLIASASVDKSI----KIWDVRNYRVPIAVLNG-------HGYAVRKVKFSPHRRNLLA 253 (317)
Q Consensus 189 --~--~~~~~v~~i~~~~~~~~~l~~~~~d~~i----~v~d~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~ 253 (317)
. .+...+..++..+ ++..++.+-..|.- -+.-......++..+.. ....|-+++.+.+...+.+
T Consensus 218 ~Lp~~l~~lSiRHld~g~-dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~l 296 (366)
T COG3490 218 TLPASLRQLSIRHLDIGR-DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVAL 296 (366)
T ss_pred cCchhhhhcceeeeeeCC-CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEE
Confidence 1 2334577777776 66655554333210 00000011112222221 1235677888766663444
Q ss_pred eeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121 254 SCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309 (317)
Q Consensus 254 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~ 309 (317)
++-..+...+||..++. ++..-.- .....++- . ..-++..+.+|.+.++.
T Consensus 297 TSP~GN~~vi~da~tG~-vv~~a~l--~daaGva~--~-~~gf~vssg~G~~~~~s 346 (366)
T COG3490 297 TSPRGNRAVIWDAATGA-VVSEAAL--PDAAGVAA--A-KGGFAVSSGQGRIIFYS 346 (366)
T ss_pred ecCCCCeEEEEEcCCCc-EEecccc--ccccccee--c-cCceEEecCCceEEecc
Confidence 44456678899999987 3222111 11223332 2 23345555578777664
No 406
>PRK10115 protease 2; Provisional
Probab=96.95 E-value=0.3 Score=44.68 Aligned_cols=198 Identities=6% Similarity=0.006 Sum_probs=101.0
Q ss_pred cceEEEEEecCCCCEEEEEcCC----CEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCC-----CeEEEE
Q 021121 107 REVHSADYNPTRRDSFITSSWD----DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGD-----CTLRIW 177 (317)
Q Consensus 107 ~~v~~~~~~~~~~~~l~~~~~d----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~ 177 (317)
-.+..+.|+|+++.+.++.+.+ ..|++.|+.+++.+...-.... ..++|.+++..++++...+ ..|+.+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 3466788999998333443333 3588999988764322211111 4599999844455554432 368888
Q ss_pred eCCCC--CceeeeccCccceE-EEEecCCCCcEEEEEec---CCcEEEEEccCCC-ccEEEEecCCCceeEEEecCCCCe
Q 021121 178 DVREM--GSTMIIPAHEFEIL-ACDWNKYDDCLIASASV---DKSIKIWDVRNYR-VPIAVLNGHGYAVRKVKFSPHRRN 250 (317)
Q Consensus 178 d~~~~--~~~~~~~~~~~~v~-~i~~~~~~~~~l~~~~~---d~~i~v~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~ 250 (317)
++.++ +....+........ .+..+. ++++++..+. ++.+.+++..... .+...+.........+. +..+.
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~- 281 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTT-SKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHR- 281 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcC-CCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCE-
Confidence 88877 33334443222232 333333 6665554433 3468888853321 11222221122222222 22333
Q ss_pred eEEeeecC-C--eEEEEecccccceeeeeecc-c-ceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121 251 LLASCSYD-M--TVCLWDFMVEDALVGRYDHH-T-EFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 251 ~l~~~~~d-~--~i~vwd~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
+++....+ . .|...++..... ...+..+ . ..|..+.+.. +.++++...+|.-+++-++.
T Consensus 282 ly~~tn~~~~~~~l~~~~~~~~~~-~~~l~~~~~~~~i~~~~~~~--~~l~~~~~~~g~~~l~~~~~ 345 (686)
T PRK10115 282 FYLRSNRHGKNFGLYRTRVRDEQQ-WEELIPPRENIMLEGFTLFT--DWLVVEERQRGLTSLRQINR 345 (686)
T ss_pred EEEEEcCCCCCceEEEecCCCccc-CeEEECCCCCCEEEEEEEEC--CEEEEEEEeCCEEEEEEEcC
Confidence 33333221 2 343334442221 2233333 2 3678788773 56777777788777766654
No 407
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.95 E-value=0.13 Score=43.62 Aligned_cols=145 Identities=17% Similarity=0.247 Sum_probs=94.9
Q ss_pred ecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCC-------CCeEEEEeCCCeEEEEeCCCCCceee
Q 021121 115 NPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRH-------SDVFCSASGDCTLRIWDVREMGSTMI 187 (317)
Q Consensus 115 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~~l~~~~~dg~i~i~d~~~~~~~~~ 187 (317)
..+...++..|+....++-.|++.|+.+..+..+..- -+.|.|.. .+.| +|-.+..|.-.|.|-......
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCcee
Confidence 3444434556667778888999999999988876653 56777751 2334 455566677777765432111
Q ss_pred eccC-----ccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEE
Q 021121 188 IPAH-----EFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVC 262 (317)
Q Consensus 188 ~~~~-----~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 262 (317)
.... .....+..-. ...++++++..|-|++||--. ......+.+.+..|..+..+.+|+.+|+++ ...+.
T Consensus 553 v~esKdY~tKn~Fss~~tT--esGyIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yll 627 (776)
T COG5167 553 VVESKDYKTKNKFSSGMTT--ESGYIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLL 627 (776)
T ss_pred eeeehhccccccccccccc--cCceEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEee--cceEE
Confidence 1111 1223333332 456899999999999999654 333556777888999999999999766665 45677
Q ss_pred EEecc
Q 021121 263 LWDFM 267 (317)
Q Consensus 263 vwd~~ 267 (317)
+-|++
T Consensus 628 L~d~~ 632 (776)
T COG5167 628 LTDVP 632 (776)
T ss_pred EEecc
Confidence 77764
No 408
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.87 E-value=0.15 Score=39.92 Aligned_cols=191 Identities=10% Similarity=0.079 Sum_probs=113.4
Q ss_pred eeeecCCC--CeeEEEecCCCCCeEEEEEcCC--eEEEEEeCCCCCCCCceeecc-CCcceEEEEEecCCCCEEEEEcCC
Q 021121 54 LVAFDTAD--GVYDLAWSESHDSLLIAAVADG--SVKIYDTALPPTANPIRSLHE-HTREVHSADYNPTRRDSFITSSWD 128 (317)
Q Consensus 54 ~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg--~i~v~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d 128 (317)
+..+.|.. -...+.|..++ .++-+.+.-| .|+.+|+.++ +......- ..---..++...+ . +..-.=.+
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg---~~~~~~~l~~~~FgEGit~~~d-~-l~qLTWk~ 109 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETG---KVLQSVPLPPRYFGEGITILGD-K-LYQLTWKE 109 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTS---SEEEEEE-TTT--EEEEEEETT-E-EEEEESSS
T ss_pred EEECCCCCcccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCC---cEEEEEECCccccceeEEEECC-E-EEEEEecC
Confidence 34444443 34567786666 4666665555 6888888776 33322221 1222233444433 2 45555678
Q ss_pred CEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccC--c---cceEEEEecCC
Q 021121 129 DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAH--E---FEILACDWNKY 203 (317)
Q Consensus 129 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~---~~v~~i~~~~~ 203 (317)
+...+||.++.+.+.++.- .+.-+.++. + +..|+.......++++|..+.+....+... . ..++.+.|.
T Consensus 110 ~~~f~yd~~tl~~~~~~~y-~~EGWGLt~--d-g~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-- 183 (264)
T PF05096_consen 110 GTGFVYDPNTLKKIGTFPY-PGEGWGLTS--D-GKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-- 183 (264)
T ss_dssp SEEEEEETTTTEEEEEEE--SSS--EEEE--C-SSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--
T ss_pred CeEEEEccccceEEEEEec-CCcceEEEc--C-CCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--
Confidence 9999999999988888863 456677773 3 555666666778999999888776665432 1 235667776
Q ss_pred CCcEEEEEecCCcEEEEEccCCCccEEEEe---------------cCCCceeEEEecCCCCeeEEeeec
Q 021121 204 DDCLIASASVDKSIKIWDVRNYRVPIAVLN---------------GHGYAVRKVKFSPHRRNLLASCSY 257 (317)
Q Consensus 204 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~l~~~~~ 257 (317)
++.+.|=.-....|...|..+++. ...+. ......+.|++.|..+.+++||-.
T Consensus 184 ~G~IyANVW~td~I~~Idp~tG~V-~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 184 NGKIYANVWQTDRIVRIDPETGKV-VGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp TTEEEEEETTSSEEEEEETTT-BE-EEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred cCEEEEEeCCCCeEEEEeCCCCeE-EEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 566666666667788888877663 22221 013468899999999888888753
No 409
>PHA03098 kelch-like protein; Provisional
Probab=96.87 E-value=0.15 Score=45.27 Aligned_cols=182 Identities=10% Similarity=0.105 Sum_probs=84.7
Q ss_pred CeEEEEEcCC------eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCC-----CEEEEEEcCCCcee
Q 021121 74 SLLIAAVADG------SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD-----DTVKLWTVDRPTSV 142 (317)
Q Consensus 74 ~~l~~~~~dg------~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~ 142 (317)
.+++.|+.++ .+..||..+. .+.....+.........+.+ ++. +++.|+.+ ..+..||..+.+-.
T Consensus 296 ~lyv~GG~~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~R~~~~~~~~--~~~-lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 296 VIYFIGGMNKNNLSVNSVVSYDTKTK-SWNKVPELIYPRKNPGVTVF--NNR-IYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred EEEEECCCcCCCCeeccEEEEeCCCC-eeeECCCCCcccccceEEEE--CCE-EEEEeCCCCCEecceEEEEcCCCCcee
Confidence 4666666542 4667776543 22222222211112222222 344 67777755 35778888765322
Q ss_pred E--EeeccccceEEEEEecCCCCeEEEEeCC------CeEEEEeCCCCCc--eeeeccCccceEEEEecCCCCcEEEEEe
Q 021121 143 R--TFKEHAYCVYNATWNPRHSDVFCSASGD------CTLRIWDVREMGS--TMIIPAHEFEILACDWNKYDDCLIASAS 212 (317)
Q Consensus 143 ~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~l~~~~ 212 (317)
. .+...... .+++.. ++.+.+.|+.+ ..+..||+.+.+= ...++..... .+++.. ++.+++.|+
T Consensus 372 ~~~~lp~~r~~-~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG 445 (534)
T PHA03098 372 EEPPLIFPRYN-PCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIYH--DGKIYVIGG 445 (534)
T ss_pred eCCCcCcCCcc-ceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEEE--CCEEEEECC
Confidence 1 11111111 112221 26677777632 4588899876421 1111111111 122222 566777776
Q ss_pred cCC--------cEEEEEccCCCccEEEEec---CCCceeEEEecCCCCeeEEeeecC-----CeEEEEeccccc
Q 021121 213 VDK--------SIKIWDVRNYRVPIAVLNG---HGYAVRKVKFSPHRRNLLASCSYD-----MTVCLWDFMVED 270 (317)
Q Consensus 213 ~d~--------~i~v~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~vwd~~~~~ 270 (317)
.+. .+.+||..+.+- ..... .......+.+ +++ +++.|+.+ +.+.+||..+.+
T Consensus 446 ~~~~~~~~~~~~v~~yd~~~~~W--~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNPVTNKW--TELSSLNFPRINASLCIF--NNK-IYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred ccCCCCCcccceEEEecCCCCce--eeCCCCCcccccceEEEE--CCE-EEEEcCCcCCcccceeEEEeCCCCE
Confidence 432 388888876431 11111 1111112222 454 66677654 467888877654
No 410
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.025 Score=52.30 Aligned_cols=148 Identities=11% Similarity=0.110 Sum_probs=90.4
Q ss_pred CCCeeEEEecCCCCCeEEE-EEcCCeEEEEEeCCCCCC-----CCce---eeccCCcceEEEEEecCCCCEEEEEcCCCE
Q 021121 60 ADGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTA-----NPIR---SLHEHTREVHSADYNPTRRDSFITSSWDDT 130 (317)
Q Consensus 60 ~~~v~~~~~~~~~~~~l~~-~~~dg~i~v~~~~~~~~~-----~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 130 (317)
.-.+..+...+|+....+. .+.+-.|..||++.-... .+++ .......-..++.|+|.-....++...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 3455666666665322222 233347888998753211 1111 111223445678899887667888889999
Q ss_pred EEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc----CccceEEEEecCCCCc
Q 021121 131 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA----HEFEILACDWNKYDDC 206 (317)
Q Consensus 131 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~v~~i~~~~~~~~ 206 (317)
|++..+........-.......++++|+|. +..++.|-..|++.-|...- +....+.+ ....|.++.|-. ...
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSpr-GKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~Wl~-t~e 256 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPR-GKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTWLS-TQE 256 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccc-cceeeEecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEEec-cee
Confidence 999877543222221224566899999999 88888999999999887642 32233221 135689999986 444
Q ss_pred EEEE
Q 021121 207 LIAS 210 (317)
Q Consensus 207 ~l~~ 210 (317)
++++
T Consensus 257 flvv 260 (1405)
T KOG3630|consen 257 FLVV 260 (1405)
T ss_pred EEEE
Confidence 4443
No 411
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.80 E-value=0.4 Score=43.83 Aligned_cols=76 Identities=24% Similarity=0.323 Sum_probs=50.9
Q ss_pred cceEEEEEecCCCCEEEEEcCCCEEEEEEcCC---------Cce---eEEe--------eccccceEEEEEecCC--CCe
Q 021121 107 REVHSADYNPTRRDSFITSSWDDTVKLWTVDR---------PTS---VRTF--------KEHAYCVYNATWNPRH--SDV 164 (317)
Q Consensus 107 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~---------~~~---~~~~--------~~~~~~v~~~~~~~~~--~~~ 164 (317)
-.|..+.++|+|. +++..|..|...+.=.+. ++. .+.+ ......|..+.|+|.+ +..
T Consensus 85 f~v~~i~~n~~g~-~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGS-LLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCC-EEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3688899999998 677666655444332221 111 1111 1234578999999973 578
Q ss_pred EEEEeCCCeEEEEeCCCCC
Q 021121 165 FCSASGDCTLRIWDVREMG 183 (317)
Q Consensus 165 l~~~~~dg~i~i~d~~~~~ 183 (317)
|++-+.|+.+|+||+....
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 8889999999999997543
No 412
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.18 Score=39.70 Aligned_cols=260 Identities=15% Similarity=0.108 Sum_probs=142.2
Q ss_pred CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEe
Q 021121 36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN 115 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 115 (317)
+.-++|.|+..... ...+..+...+--.++..+ | +++.++..+.-..+.|+..+........+......-..++.+
T Consensus 105 ssGL~IvDIS~P~s-P~~~~~lnt~gyaygv~vs--G-n~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS 180 (370)
T COG5276 105 SSGLRIVDISTPDS-PTLIGFLNTDGYAYGVYVS--G-NYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS 180 (370)
T ss_pred CCceEEEeccCCCC-cceeccccCCceEEEEEec--C-CEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe
Confidence 56799999987653 2233333333333444444 5 477777655557888998775555555555555555677777
Q ss_pred cCCCCEEEEEcCCCEEEEEEcCCCceeEEee--ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccC-c
Q 021121 116 PTRRDSFITSSWDDTVKLWTVDRPTSVRTFK--EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAH-E 192 (317)
Q Consensus 116 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~ 192 (317)
|+ +-..+..|+-+.+.|+.......-+. .....+.++..+++ ..+++. . +--+.+-|..+.+....+-.. .
T Consensus 181 --Gn-~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn-r~y~vv-y-~egvlivd~s~~ssp~~~gsyet 254 (370)
T COG5276 181 --GN-YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN-RAYLVV-Y-DEGVLIVDVSGPSSPTVFGSYET 254 (370)
T ss_pred --cC-eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC-eeEEEE-c-ccceEEEecCCCCCceEeecccc
Confidence 44 67777889999999998764322221 12235777777765 444433 3 334667787766544443211 1
Q ss_pred cceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEE--EecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121 193 FEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAV--LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED 270 (317)
Q Consensus 193 ~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~ 270 (317)
..+.++.--|-.+++......+.-+.+-|..+...+... +......-..+..+ +. ++..+..+ ...+-+....+
T Consensus 255 ~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~-y~yiadkn-~g~vV~~s~~s 330 (370)
T COG5276 255 SNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GN-YNYIADKN-TGAVVDASPPS 330 (370)
T ss_pred CCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cC-eeEeccCC-ceEEEeCCChh
Confidence 222222111124556666666777788888765433221 11111123344433 22 34334333 34455544433
Q ss_pred ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121 271 ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG 311 (317)
Q Consensus 271 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~ 311 (317)
......+....+.+.+.+-+ .+.+.+...++-+.+|+..
T Consensus 331 -~m~~~~g~~ti~~s~~v~~~-~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 331 -MMDKRPGRPTIGQSCDVSVD-TQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred -hcccccCcceEeeecceEEE-eeEEEEeecCCCEEEEEec
Confidence 22223333333444555555 4588888999999999863
No 413
>PHA03098 kelch-like protein; Provisional
Probab=96.70 E-value=0.18 Score=44.73 Aligned_cols=179 Identities=6% Similarity=0.019 Sum_probs=84.5
Q ss_pred EEEEEcCCC------EEEEEEcCCCceeEEeec---cccceEEEEEecCCCCeEEEEeCC-----CeEEEEeCCCCCce-
Q 021121 121 SFITSSWDD------TVKLWTVDRPTSVRTFKE---HAYCVYNATWNPRHSDVFCSASGD-----CTLRIWDVREMGST- 185 (317)
Q Consensus 121 ~l~~~~~dg------~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~- 185 (317)
+++.|+.++ .+..||..+.+-. .+.. .......+.. + +.+++.|+.+ ..+..||..+.+=.
T Consensus 297 lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~~~--~-~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 297 IYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVTVF--N-NRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred EEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEEEE--C-CEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 666666542 5778888765432 2211 1111222222 2 6777778765 34777887764311
Q ss_pred -eeeccCccceEEEEecCCCCcEEEEEecC------CcEEEEEccCCCccEEEEecCC--CceeEEEecCCCCeeEEeee
Q 021121 186 -MIIPAHEFEILACDWNKYDDCLIASASVD------KSIKIWDVRNYRVPIAVLNGHG--YAVRKVKFSPHRRNLLASCS 256 (317)
Q Consensus 186 -~~~~~~~~~v~~i~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~ 256 (317)
..+...... .+++.. ++++++.|+.+ ..+..||..+.+- ....... ..-.+++. .++. +++.|+
T Consensus 373 ~~~lp~~r~~-~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W--~~~~~~p~~r~~~~~~~-~~~~-iyv~GG 445 (534)
T PHA03098 373 EPPLIFPRYN-PCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKW--SKGSPLPISHYGGCAIY-HDGK-IYVIGG 445 (534)
T ss_pred CCCcCcCCcc-ceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCee--eecCCCCccccCceEEE-ECCE-EEEECC
Confidence 111111111 122222 66777777732 3578889876431 1111110 00112222 2444 666666
Q ss_pred cC--------CeEEEEecccccce-eeeeecccceeEeEEEEeccCCeEEEeecC-----CcEEEEecCCC
Q 021121 257 YD--------MTVCLWDFMVEDAL-VGRYDHHTEFAVGVDMSVLVEGLLASTGWD-----ELVYVWQQGMD 313 (317)
Q Consensus 257 ~d--------~~i~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~~w~~~~~ 313 (317)
.+ ..+.+||..+.+-. +..+....... +++. .+ +.+++.||.+ ..+.+||...+
T Consensus 446 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~-~~~~-~~-~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINA-SLCI-FN-NKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred ccCCCCCcccceEEEecCCCCceeeCCCCCcccccc-eEEE-EC-CEEEEEcCCcCCcccceeEEEeCCCC
Confidence 43 23888898776511 11111111111 1221 23 6677777754 46777876653
No 414
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.70 E-value=0.21 Score=39.14 Aligned_cols=182 Identities=13% Similarity=0.108 Sum_probs=107.3
Q ss_pred EEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeC
Q 021121 12 SVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTA 91 (317)
Q Consensus 12 ~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~ 91 (317)
.+.|.. ++.+.-+++.. +...|+.+|+.++. ......++..----.++... +.+....-.++...+||.+
T Consensus 49 GL~~~~--~g~LyESTG~y----G~S~l~~~d~~tg~--~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~ 118 (264)
T PF05096_consen 49 GLEFLD--DGTLYESTGLY----GQSSLRKVDLETGK--VLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPN 118 (264)
T ss_dssp EEEEEE--TTEEEEEECST----TEEEEEEEETTTSS--EEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETT
T ss_pred cEEecC--CCEEEEeCCCC----CcEEEEEEECCCCc--EEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccc
Confidence 567755 57788877752 35589999998765 22222222222122333443 3466666778999999986
Q ss_pred CCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecc-----ccceEEEEEecCCCCeEE
Q 021121 92 LPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEH-----AYCVYNATWNPRHSDVFC 166 (317)
Q Consensus 92 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~ 166 (317)
+- +.+..+.- .+.=+.++ .++. .|+.......+.++|.++.+..+.+.-. -..++.+.|- + +.+.|
T Consensus 119 tl---~~~~~~~y-~~EGWGLt--~dg~-~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~-G~IyA 189 (264)
T PF05096_consen 119 TL---KKIGTFPY-PGEGWGLT--SDGK-RLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-N-GKIYA 189 (264)
T ss_dssp TT---EEEEEEE--SSS--EEE--ECSS-CEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-T-TEEEE
T ss_pred cc---eEEEEEec-CCcceEEE--cCCC-EEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-c-CEEEE
Confidence 54 55555442 34556666 4556 5566566779999999988777766532 2346677776 2 55665
Q ss_pred EEeCCCeEEEEeCCCCCceeeec---------------cCccceEEEEecCCCCcEEEEEe
Q 021121 167 SASGDCTLRIWDVREMGSTMIIP---------------AHEFEILACDWNKYDDCLIASAS 212 (317)
Q Consensus 167 ~~~~dg~i~i~d~~~~~~~~~~~---------------~~~~~v~~i~~~~~~~~~l~~~~ 212 (317)
=.=....|...|..+++....+. ....-.+.|+++|..+.+++||=
T Consensus 190 NVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 190 NVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 55566678888888887665442 01234789999996777777763
No 415
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.64 E-value=0.31 Score=40.30 Aligned_cols=237 Identities=12% Similarity=0.101 Sum_probs=117.3
Q ss_pred CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCcee----eccCCcceEEEEEecC---CCCEEEEEcC-C-----
Q 021121 62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRS----LHEHTREVHSADYNPT---RRDSFITSSW-D----- 128 (317)
Q Consensus 62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~---~~~~l~~~~~-d----- 128 (317)
..+.|+|.|++ .+ +++...|.|++++ ..+.....+.. ..........++++|+ .. .|..... .
T Consensus 3 ~P~~~a~~pdG-~l-~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~-~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 3 NPRSMAFLPDG-RL-LVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNG-YLYVYYTNADEDGG 78 (331)
T ss_dssp SEEEEEEETTS-CE-EEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC--EEEEEEEEE-TSSS
T ss_pred CceEEEEeCCC-cE-EEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCC-EEEEEEEcccCCCC
Confidence 35789999997 35 4556799999999 32211111211 2234567889999995 22 3333322 1
Q ss_pred ---CEEEEEEcCCC-------cee-EEeec---cccceEEEEEecCCCCeEEEEeCC-------------CeEEEEeCCC
Q 021121 129 ---DTVKLWTVDRP-------TSV-RTFKE---HAYCVYNATWNPRHSDVFCSASGD-------------CTLRIWDVRE 181 (317)
Q Consensus 129 ---g~v~iwd~~~~-------~~~-~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~ 181 (317)
..|.-|....+ +.+ ..+.. .......|.|.|+ +.+.++.+.. |.|.-.+...
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpD-G~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG 157 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPD-GKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG 157 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TT-SEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCC-CcEEEEeCCCCCcccccccccccceEEEecccC
Confidence 24555555443 111 11121 2344577999999 6666665443 3333334321
Q ss_pred CC------------ceee-eccCccceEEEEecCCCCcEEEEEe-cCC--cEEEEEcc--------C-------------
Q 021121 182 MG------------STMI-IPAHEFEILACDWNKYDDCLIASAS-VDK--SIKIWDVR--------N------------- 224 (317)
Q Consensus 182 ~~------------~~~~-~~~~~~~v~~i~~~~~~~~~l~~~~-~d~--~i~v~d~~--------~------------- 224 (317)
.- .... -.++.. ...++|+|.++.++++=. .++ .|.+...- .
T Consensus 158 ~~p~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~ 236 (331)
T PF07995_consen 158 SIPADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDA 236 (331)
T ss_dssp SB-TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTG
T ss_pred cCCCCCccccCCCceEEEEEeCCCc-cccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccc
Confidence 10 0001 112332 457899994366665422 222 23222110 0
Q ss_pred -----CCccEEEEecCCCceeEEEecCCCC------eeEEeeecCCeEEEEecccccceee---eeecccceeEeEEEEe
Q 021121 225 -----YRVPIAVLNGHGYAVRKVKFSPHRR------NLLASCSYDMTVCLWDFMVEDALVG---RYDHHTEFAVGVDMSV 290 (317)
Q Consensus 225 -----~~~~~~~~~~~~~~v~~~~~~~~~~------~~l~~~~~d~~i~vwd~~~~~~~~~---~~~~~~~~v~~~~~~~ 290 (317)
...+...+..| ..+..+.|..... .++++.-..+.|....+........ .+......+.++++.|
T Consensus 237 ~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p 315 (331)
T PF07995_consen 237 PSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP 315 (331)
T ss_dssp SS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET
T ss_pred cCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC
Confidence 00123334434 4566777764321 2455555566788777764432221 1233445799999999
Q ss_pred ccCCeEEEeecCCcEE
Q 021121 291 LVEGLLASTGWDELVY 306 (317)
Q Consensus 291 ~~~~~l~s~~~dg~i~ 306 (317)
| +.++++.+.+|.|+
T Consensus 316 D-G~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 316 D-GALYVSDDSDGKIY 330 (331)
T ss_dssp T-SEEEEEE-TTTTEE
T ss_pred C-CeEEEEECCCCeEe
Confidence 9 78888877888774
No 416
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.61 E-value=0.35 Score=40.65 Aligned_cols=153 Identities=16% Similarity=0.184 Sum_probs=80.5
Q ss_pred cceeEEEEecCCCCeEEEEEecccccc-----cCc-eEEEEecCCCCCcceeeeee-cCCCCeeEEEecCCCCCeEEEEE
Q 021121 8 FNGYSVKFSPFYESRLAVATAQNFGIL-----GNG-RVHVLDLSPAAPALTELVAF-DTADGVYDLAWSESHDSLLIAAV 80 (317)
Q Consensus 8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~-----~~g-~i~i~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~ 80 (317)
..+..|+|.+ ++++.++....+... ..+ +|.+++-............+ +.......+++.+++ +++ +.
T Consensus 14 ~~P~~ia~d~--~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV-~~ 88 (367)
T TIGR02604 14 RNPIAVCFDE--RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYV-AT 88 (367)
T ss_pred CCCceeeECC--CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEE-eC
Confidence 4567899999 788888764221100 123 78777654332222222222 334456889998876 444 33
Q ss_pred cCCeEEEE-EeCCCC----CCCCc-eeecc----CCcceEEEEEecCCCCEEEEEcC-------------------CCEE
Q 021121 81 ADGSVKIY-DTALPP----TANPI-RSLHE----HTREVHSADYNPTRRDSFITSSW-------------------DDTV 131 (317)
Q Consensus 81 ~dg~i~v~-~~~~~~----~~~~~-~~~~~----~~~~v~~~~~~~~~~~~l~~~~~-------------------dg~v 131 (317)
.. .|..+ +.+... ..+.+ ..+.. +......++|.|+|. +.++-+. .|.|
T Consensus 89 ~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i 166 (367)
T TIGR02604 89 PP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGL 166 (367)
T ss_pred CC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceE
Confidence 33 34433 433211 11111 11222 234577899999997 4443331 1456
Q ss_pred EEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEe
Q 021121 132 KLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSAS 169 (317)
Q Consensus 132 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 169 (317)
..++..+++. ..+...-.....++|+|+ ++++++-.
T Consensus 167 ~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~-G~l~~tdn 202 (367)
T TIGR02604 167 FRYNPDGGKL-RVVAHGFQNPYGHSVDSW-GDVFFCDN 202 (367)
T ss_pred EEEecCCCeE-EEEecCcCCCccceECCC-CCEEEEcc
Confidence 6666655443 233222334678999997 77776544
No 417
>PHA02790 Kelch-like protein; Provisional
Probab=96.58 E-value=0.27 Score=43.00 Aligned_cols=177 Identities=7% Similarity=0.007 Sum_probs=84.2
Q ss_pred EEEEEcCCC-----EEEEEEcCCCceeE--EeeccccceEEEEEecCCCCeEEEEeCC--CeEEEEeCCCCCc--eeeec
Q 021121 121 SFITSSWDD-----TVKLWTVDRPTSVR--TFKEHAYCVYNATWNPRHSDVFCSASGD--CTLRIWDVREMGS--TMIIP 189 (317)
Q Consensus 121 ~l~~~~~dg-----~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~--~~~~~ 189 (317)
+++.|+.++ .+..||..+++-.. .+.........+. -+ +.+.+.|+.+ ..+..||..+.+= ...+.
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~-~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--AN-NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--EC-CEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 667776542 57778887654222 1111111112222 22 6777777754 3578888765421 11121
Q ss_pred cCccceEEEEecCCCCcEEEEEecCC---cEEEEEccCCCccEEEEecCCCc--eeEEEecCCCCeeEEeeecCCeEEEE
Q 021121 190 AHEFEILACDWNKYDDCLIASASVDK---SIKIWDVRNYRVPIAVLNGHGYA--VRKVKFSPHRRNLLASCSYDMTVCLW 264 (317)
Q Consensus 190 ~~~~~v~~i~~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~d~~i~vw 264 (317)
...... +++.. ++++.+.|+.++ .+..||.++.+ -.....-..+ -.+++ .-+++ +.+.|+ .+.+|
T Consensus 351 ~~r~~~-~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~--W~~~~~m~~~r~~~~~~-~~~~~-IYv~GG---~~e~y 420 (480)
T PHA02790 351 KPRCNP-AVASI--NNVIYVIGGHSETDTTTEYLLPNHDQ--WQFGPSTYYPHYKSCAL-VFGRR-LFLVGR---NAEFY 420 (480)
T ss_pred CCCccc-EEEEE--CCEEEEecCcCCCCccEEEEeCCCCE--EEeCCCCCCccccceEE-EECCE-EEEECC---ceEEe
Confidence 111111 22222 678888887654 46778876543 1111111000 01222 22444 566653 57789
Q ss_pred ecccccc-eeeeeecccceeEeEEEEeccCCeEEEeecC-----CcEEEEecCCC
Q 021121 265 DFMVEDA-LVGRYDHHTEFAVGVDMSVLVEGLLASTGWD-----ELVYVWQQGMD 313 (317)
Q Consensus 265 d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~~w~~~~~ 313 (317)
|..+++- .+..+....... +++.. + +.+.+.||.+ ..+..||...+
T Consensus 421 dp~~~~W~~~~~m~~~r~~~-~~~v~-~-~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 421 CESSNTWTLIDDPIYPRDNP-ELIIV-D-NKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred cCCCCcEeEcCCCCCCcccc-EEEEE-C-CEEEEECCcCCCcccceEEEEECCCC
Confidence 9877651 111121111111 22222 2 6778888754 35778887654
No 418
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.17 Score=42.38 Aligned_cols=133 Identities=8% Similarity=-0.030 Sum_probs=86.2
Q ss_pred EEEEEecCCCCeEEEEeCCCeEEEEeCCCCC---ceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCc--
Q 021121 153 YNATWNPRHSDVFCSASGDCTLRIWDVREMG---STMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV-- 227 (317)
Q Consensus 153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-- 227 (317)
+.+-|... ++.+ .+...|.+.-|-..... ++..-...+++|.++.|++ |.+.+|+--.+.+|.+++....+.
T Consensus 26 ngvFfDDa-Nkql-favrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 26 NGVFFDDA-NKQL-FAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred cceeeccC-cceE-EEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEecc-CcceEEEEecCceEEEEecCCCchhh
Confidence 44445443 3333 33344455555544322 2222223566899999999 999999999999999999843322
Q ss_pred -cEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEec
Q 021121 228 -PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVL 291 (317)
Q Consensus 228 -~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 291 (317)
.....+..+..|....|+.... +|-.+..| +.+|.+...+..++..+.|...|.-..|.++
T Consensus 103 ~~~~~ck~k~~~IlGF~W~~s~e--~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~e 164 (657)
T KOG2377|consen 103 EYTQECKTKNANILGFCWTSSTE--IAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPE 164 (657)
T ss_pred HHHHHhccCcceeEEEEEecCee--EEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccc
Confidence 1222333445688999997754 55555444 7888877766666777788888888899987
No 419
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.45 E-value=0.47 Score=40.26 Aligned_cols=152 Identities=14% Similarity=0.185 Sum_probs=89.4
Q ss_pred CCCCCeEEEEEcCCeEEEEEeCCCCCC-CCceeeccCCcceEEEEEec---CCCCEEEEEcCCCEEEEEEcCCC--c---
Q 021121 70 ESHDSLLIAAVADGSVKIYDTALPPTA-NPIRSLHEHTREVHSADYNP---TRRDSFITSSWDDTVKLWTVDRP--T--- 140 (317)
Q Consensus 70 ~~~~~~l~~~~~dg~i~v~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~v~iwd~~~~--~--- 140 (317)
+++...+++|+..|.++||+....+.. ..+..-..-..+|..+..-+ ......++.-.-..+.+|.+... .
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence 445568999999999999998544211 11222223467888877642 22223333455678888887321 1
Q ss_pred ----eeEEeeccc--cceEEEEEecC----CCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEE
Q 021121 141 ----SVRTFKEHA--YCVYNATWNPR----HSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIAS 210 (317)
Q Consensus 141 ----~~~~~~~~~--~~v~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~ 210 (317)
.+..+..|. .....++.-|- +..++.+-+.||.+.+|+-+.....+.+.. -.-...+.+.+ ..+.+++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~-~tDsfvt 191 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCP-RTDSFVT 191 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEee-cCCEEEE
Confidence 111222222 22333333332 246888899999999999765433333332 22234567777 6777888
Q ss_pred EecCCcEEEEEcc
Q 021121 211 ASVDKSIKIWDVR 223 (317)
Q Consensus 211 ~~~d~~i~v~d~~ 223 (317)
++.+..+.-|...
T Consensus 192 ~sss~~l~~Yky~ 204 (418)
T PF14727_consen 192 ASSSWTLECYKYQ 204 (418)
T ss_pred ecCceeEEEecHH
Confidence 8888888888764
No 420
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.42 E-value=0.42 Score=39.47 Aligned_cols=239 Identities=17% Similarity=0.208 Sum_probs=116.5
Q ss_pred ceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeee-----ecCCCCeeEEEecCC--CCCeEEEEEc
Q 021121 9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVA-----FDTADGVYDLAWSES--HDSLLIAAVA 81 (317)
Q Consensus 9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~--~~~~l~~~~~ 81 (317)
..++|+|.| +++++++.. .|+|++++.+... ...+.. .........++++|+ .+..|.+...
T Consensus 3 ~P~~~a~~p--dG~l~v~e~-------~G~i~~~~~~g~~--~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 3 NPRSMAFLP--DGRLLVAER-------SGRIWVVDKDGSL--KTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp SEEEEEEET--TSCEEEEET-------TTEEEEEETTTEE--CEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred CceEEEEeC--CCcEEEEeC-------CceEEEEeCCCcC--cceecccccccccccCCcccceeccccCCCCEEEEEEE
Confidence 468899999 688888754 8999999932221 122211 134567899999994 1123333332
Q ss_pred -C--------CeEEEEEeCCCC-C---CCCc-eeecc---CCcceEEEEEecCCCCEEEEEcCC-------------CEE
Q 021121 82 -D--------GSVKIYDTALPP-T---ANPI-RSLHE---HTREVHSADYNPTRRDSFITSSWD-------------DTV 131 (317)
Q Consensus 82 -d--------g~i~v~~~~~~~-~---~~~~-~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d-------------g~v 131 (317)
. ..|.-|.+.... . .+.+ ..... ....-..|.|.|++. ++++.+.. |.|
T Consensus 72 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~~~~~~~~~~~~~~~G~i 150 (331)
T PF07995_consen 72 NADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGDGGNDDNAQDPNSLRGKI 150 (331)
T ss_dssp EE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-TTTGGGGCSTTSSTTEE
T ss_pred cccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCCCCCcccccccccccceE
Confidence 1 234444444320 0 0111 11111 233456699999997 54444332 344
Q ss_pred EEEEcCCCc------------eeEEeeccccceEEEEEecCCCCeEEE-EeCCCeEEEEeCCCCC---------------
Q 021121 132 KLWTVDRPT------------SVRTFKEHAYCVYNATWNPRHSDVFCS-ASGDCTLRIWDVREMG--------------- 183 (317)
Q Consensus 132 ~iwd~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~--------------- 183 (317)
.-.+....- ....+..--.....++|+|..+.++++ .+.++.=.|.-++.+.
T Consensus 151 lri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~ 230 (331)
T PF07995_consen 151 LRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSG 230 (331)
T ss_dssp EEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTS
T ss_pred EEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCC
Confidence 444432110 011111111236789999984444433 2223222222222111
Q ss_pred --------------ceeeeccCccceEEEEecC------CCCcEEEEEecCCcEEEEEccCCCccEE--E-EecCCCcee
Q 021121 184 --------------STMIIPAHEFEILACDWNK------YDDCLIASASVDKSIKIWDVRNYRVPIA--V-LNGHGYAVR 240 (317)
Q Consensus 184 --------------~~~~~~~~~~~v~~i~~~~------~~~~~l~~~~~d~~i~v~d~~~~~~~~~--~-~~~~~~~v~ 240 (317)
+...+..| ..+..+.|.+ ..+.++++.-..+.|....+........ . +......+.
T Consensus 231 ~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~ 309 (331)
T PF07995_consen 231 PPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPR 309 (331)
T ss_dssp S-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EE
T ss_pred CccccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCce
Confidence 11222222 3445555543 2455677666667888888865432111 1 223444789
Q ss_pred EEEecCCCCeeEEeeecCCeE
Q 021121 241 KVKFSPHRRNLLASCSYDMTV 261 (317)
Q Consensus 241 ~~~~~~~~~~~l~~~~~d~~i 261 (317)
.+++.|+|. ++++-+.+|.|
T Consensus 310 ~v~~~pDG~-Lyv~~d~~G~i 329 (331)
T PF07995_consen 310 DVAQGPDGA-LYVSDDSDGKI 329 (331)
T ss_dssp EEEEETTSE-EEEEE-TTTTE
T ss_pred EEEEcCCCe-EEEEECCCCeE
Confidence 999999998 66666677765
No 421
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.31 E-value=0.65 Score=41.92 Aligned_cols=116 Identities=13% Similarity=0.134 Sum_probs=74.8
Q ss_pred CeeEEEecCC-CCCeEEEEEcCCeEEEEEeCCC-----------C------CCCCceeeccCCcceEEEEEe--cCCCCE
Q 021121 62 GVYDLAWSES-HDSLLIAAVADGSVKIYDTALP-----------P------TANPIRSLHEHTREVHSADYN--PTRRDS 121 (317)
Q Consensus 62 ~v~~~~~~~~-~~~~l~~~~~dg~i~v~~~~~~-----------~------~~~~~~~~~~~~~~v~~~~~~--~~~~~~ 121 (317)
.|+.|....- +...|+++..||.|.+|.++.- + ..++...+. -...+++++++ ...+ +
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r-l 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR-L 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce-E
Confidence 3555554432 2358899999999999976320 0 011222222 34588999998 6655 8
Q ss_pred EEEEcCCCEEEEEEcCCC--ce-eEEeeccccceEEEEEecCC--CC---eEEEEeCCCeEEEEeC
Q 021121 122 FITSSWDDTVKLWTVDRP--TS-VRTFKEHAYCVYNATWNPRH--SD---VFCSASGDCTLRIWDV 179 (317)
Q Consensus 122 l~~~~~dg~v~iwd~~~~--~~-~~~~~~~~~~v~~~~~~~~~--~~---~l~~~~~dg~i~i~d~ 179 (317)
+|+++....|.||-.... +. ...-..+...|.+++|.++. +. .+++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888888888765432 11 11111356779999998864 22 7778899999999887
No 422
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.13 E-value=0.69 Score=38.91 Aligned_cols=140 Identities=10% Similarity=0.075 Sum_probs=74.8
Q ss_pred cceEEEEEecCCCCEEEEEc-----------CCC-EEEEEEcCC--Cc--eeEEeeccccceEEEEEecCCCCeEEEEeC
Q 021121 107 REVHSADYNPTRRDSFITSS-----------WDD-TVKLWTVDR--PT--SVRTFKEHAYCVYNATWNPRHSDVFCSASG 170 (317)
Q Consensus 107 ~~v~~~~~~~~~~~~l~~~~-----------~dg-~v~iwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 170 (317)
.....|+|.++|. ++++-. ..+ .|.+++-.+ ++ ....+...-.....+++.++ + +++ +..
T Consensus 14 ~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~-G-lyV-~~~ 89 (367)
T TIGR02604 14 RNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVG-G-VYV-ATP 89 (367)
T ss_pred CCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecC-C-EEE-eCC
Confidence 3456788888887 444432 223 777776543 22 22334333445688999887 5 444 444
Q ss_pred CCeEEEEeCCCC-----Cceee---ecc----CccceEEEEecCCCCcEEEEEecC-------------------CcEEE
Q 021121 171 DCTLRIWDVREM-----GSTMI---IPA----HEFEILACDWNKYDDCLIASASVD-------------------KSIKI 219 (317)
Q Consensus 171 dg~i~i~d~~~~-----~~~~~---~~~----~~~~v~~i~~~~~~~~~l~~~~~d-------------------~~i~v 219 (317)
....++.|.... +.... +.. +......++|.| ++.+.++-+.. +.|..
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r 168 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR 168 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence 433334454321 11111 221 123467899999 88777655421 34555
Q ss_pred EEccCCCccEEEEecCCCceeEEEecCCCCeeEEe
Q 021121 220 WDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLAS 254 (317)
Q Consensus 220 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 254 (317)
+|....+ ...+...-.....++|+|++. ++++
T Consensus 169 ~~pdg~~--~e~~a~G~rnp~Gl~~d~~G~-l~~t 200 (367)
T TIGR02604 169 YNPDGGK--LRVVAHGFQNPYGHSVDSWGD-VFFC 200 (367)
T ss_pred EecCCCe--EEEEecCcCCCccceECCCCC-EEEE
Confidence 5555433 222222223456899999987 5554
No 423
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.12 E-value=0.042 Score=29.40 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=27.6
Q ss_pred cceEEEEEecCCC--CeEEEEeCCCeEEEEeCCC
Q 021121 150 YCVYNATWNPRHS--DVFCSASGDCTLRIWDVRE 181 (317)
Q Consensus 150 ~~v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~ 181 (317)
+.+.++.|+|... .+|+.+-..|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3588999998756 7999999999999999995
No 424
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.07 E-value=0.33 Score=43.75 Aligned_cols=122 Identities=9% Similarity=0.138 Sum_probs=79.3
Q ss_pred cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCC-------C---------CCcceeeeeecCCCCeeEEEec--
Q 021121 8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSP-------A---------APALTELVAFDTADGVYDLAWS-- 69 (317)
Q Consensus 8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~-------~---------~~~~~~~~~~~~~~~v~~~~~~-- 69 (317)
..|.-|....-....+++++.+ ||.|.+|..+. . ....++...+......+.++++
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~D------dG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~ 174 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTD------DGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDY 174 (717)
T ss_pred ceeeEEEecccCCeeEEEEEec------CCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEec
Confidence 3455555555455666666665 99999997631 1 0111223333456678999998
Q ss_pred CCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCC--CC---EEEEEcCCCEEEEEEc
Q 021121 70 ESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTR--RD---SFITSSWDDTVKLWTV 136 (317)
Q Consensus 70 ~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~---~l~~~~~dg~v~iwd~ 136 (317)
... +++|++++...|.||-+...........-..|...|.+|+|.++. .. .+++++-.|.+.+|++
T Consensus 175 ~~~-rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 175 KKS-RLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred Ccc-eEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 655 699999999999999876532222222122467789999997654 22 6778888999999887
No 425
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.99 E-value=0.045 Score=29.27 Aligned_cols=33 Identities=36% Similarity=0.306 Sum_probs=27.1
Q ss_pred CceeEEEecCCCC--eeEEeeecCCeEEEEecccc
Q 021121 237 YAVRKVKFSPHRR--NLLASCSYDMTVCLWDFMVE 269 (317)
Q Consensus 237 ~~v~~~~~~~~~~--~~l~~~~~d~~i~vwd~~~~ 269 (317)
+.++++.|+|... .+|+.+-..|.|.|+|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3689999997554 58888888899999999863
No 426
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.95 E-value=1.3 Score=40.63 Aligned_cols=80 Identities=19% Similarity=0.311 Sum_probs=51.3
Q ss_pred ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCC---------CCcceeeee---------ecCCCCeeEE
Q 021121 5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPA---------APALTELVA---------FDTADGVYDL 66 (317)
Q Consensus 5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~---------~~~~~~~~~---------~~~~~~v~~~ 66 (317)
...+.|..+..|| .+.+++-.+ ...|.|..+... +........ ......|..+
T Consensus 82 ~~~f~v~~i~~n~--~g~~lal~G-------~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv 152 (717)
T PF10168_consen 82 PPLFEVHQISLNP--TGSLLALVG-------PRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQV 152 (717)
T ss_pred CCceeEEEEEECC--CCCEEEEEc-------CCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEE
Confidence 3457889999999 566555554 335666565431 000001111 1344578999
Q ss_pred EecCCC--CCeEEEEEcCCeEEEEEeCCC
Q 021121 67 AWSESH--DSLLIAAVADGSVKIYDTALP 93 (317)
Q Consensus 67 ~~~~~~--~~~l~~~~~dg~i~v~~~~~~ 93 (317)
.|+|.+ +..|++-..|+++++||+...
T Consensus 153 ~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 153 RWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 999974 468888889999999999754
No 427
>PHA02790 Kelch-like protein; Provisional
Probab=95.94 E-value=0.89 Score=39.82 Aligned_cols=179 Identities=6% Similarity=-0.002 Sum_probs=81.9
Q ss_pred CeEEEEEcCC-----eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCC--CEEEEEEcCCCceeE--E
Q 021121 74 SLLIAAVADG-----SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD--DTVKLWTVDRPTSVR--T 144 (317)
Q Consensus 74 ~~l~~~~~dg-----~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~v~iwd~~~~~~~~--~ 144 (317)
.++++|+.++ .+..||.... .+..+..+.........+. -++. +.+.|+.+ ..+..||..+++-.. .
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~-~W~~~~~m~~~r~~~~~v~--~~~~-iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISN-NWIPIPPMNSPRLYASGVP--ANNK-LYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCC-EEEECCCCCchhhcceEEE--ECCE-EEEECCcCCCCceEEEECCCCeEEECCC
Confidence 4667776543 4666776543 2222222222111122222 2444 66777653 357788876543211 1
Q ss_pred eeccccceEEEEEecCCCCeEEEEeCCC---eEEEEeCCCCCcee--eeccCccceEEEEecCCCCcEEEEEecCCcEEE
Q 021121 145 FKEHAYCVYNATWNPRHSDVFCSASGDC---TLRIWDVREMGSTM--IIPAHEFEILACDWNKYDDCLIASASVDKSIKI 219 (317)
Q Consensus 145 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v 219 (317)
+............ ++.+.+.|+.++ .+..||.++.+=.. .+....... +++. - ++.+.+.|+ .+.+
T Consensus 349 l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~~-~-~~~IYv~GG---~~e~ 419 (480)
T PHA02790 349 LLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CALV-F-GRRLFLVGR---NAEF 419 (480)
T ss_pred CCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEEE-E-CCEEEEECC---ceEE
Confidence 1111111112222 267777777553 46788877542111 111111111 2221 1 566777664 5678
Q ss_pred EEccCCCccEEEEec--C-CCceeEEEecCCCCeeEEeeecC-----CeEEEEeccccc
Q 021121 220 WDVRNYRVPIAVLNG--H-GYAVRKVKFSPHRRNLLASCSYD-----MTVCLWDFMVED 270 (317)
Q Consensus 220 ~d~~~~~~~~~~~~~--~-~~~v~~~~~~~~~~~~l~~~~~d-----~~i~vwd~~~~~ 270 (317)
||.++.+ -..... + .... +++.. +++ +.+.||.+ ..+..||..+++
T Consensus 420 ydp~~~~--W~~~~~m~~~r~~~-~~~v~-~~~-IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 420 YCESSNT--WTLIDDPIYPRDNP-ELIIV-DNK-LLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ecCCCCc--EeEcCCCCCCcccc-EEEEE-CCE-EEEECCcCCCcccceEEEEECCCCe
Confidence 8887643 222111 1 1122 22222 455 67777754 346666665543
No 428
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.92 E-value=0.41 Score=42.64 Aligned_cols=112 Identities=13% Similarity=0.162 Sum_probs=66.5
Q ss_pred eEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEec--CCCCeeEEeeecCCeEEEEecc-----
Q 021121 195 ILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFS--PHRRNLLASCSYDMTVCLWDFM----- 267 (317)
Q Consensus 195 v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~d~~i~vwd~~----- 267 (317)
+.-+.-+. .++..++-+....+.|||.+.........-.....|..+.|. |+++. +.+.|....|.++--.
T Consensus 32 ~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qs-iLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 32 PSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQS-ILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred cceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCE-EEEEEcCcEEEEEEccchhhh
Confidence 33444444 444444544556799999988663232222446789999885 67874 6666678888887531
Q ss_pred ccc---ceeee--eeccc-ceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121 268 VED---ALVGR--YDHHT-EFAVGVDMSVLVEGLLASTGWDELVYVWQQG 311 (317)
Q Consensus 268 ~~~---~~~~~--~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~ 311 (317)
... ..+.. +..+. .+|.+..|.++ +.+++++ ++.+.|++-.
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~-G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKD-GTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecC-CeEEEEe--CCEEEEECCC
Confidence 111 11122 22233 57999999997 5444444 3567777643
No 429
>PRK13684 Ycf48-like protein; Provisional
Probab=95.90 E-value=0.81 Score=37.88 Aligned_cols=151 Identities=11% Similarity=-0.016 Sum_probs=82.1
Q ss_pred ccceEEEEEecCCCCeEEEEeCCCeEEEE-eCCCCCceeee-ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCC
Q 021121 149 AYCVYNATWNPRHSDVFCSASGDCTLRIW-DVREMGSTMII-PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR 226 (317)
Q Consensus 149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~-d~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 226 (317)
...+..+.+.|+ +.++ ..+..|.+..- | ..++.-... ......++++.+.+ +++.++++ ..|.+++=....+.
T Consensus 172 ~g~~~~i~~~~~-g~~v-~~g~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSPD-GKYV-AVSSRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLE 246 (334)
T ss_pred cceEEEEEECCC-CeEE-EEeCCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCC
Confidence 456888999887 5555 44555655432 2 112222222 23345788999998 77777665 45766432233222
Q ss_pred ccEEEEec----CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeee---ecccceeEeEEEEeccCCeEEEe
Q 021121 227 VPIAVLNG----HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRY---DHHTEFAVGVDMSVLVEGLLAST 299 (317)
Q Consensus 227 ~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~ 299 (317)
. -..... ....+..+.+.|++. +++ ++.+|.+.. ....++. .... ..-....+.+.|..+ + ..+..
T Consensus 247 s-W~~~~~~~~~~~~~l~~v~~~~~~~-~~~-~G~~G~v~~-S~d~G~t-W~~~~~~~~~~~~~~~~~~~~~-~-~~~~~ 319 (334)
T PRK13684 247 S-WSKPIIPEITNGYGYLDLAYRTPGE-IWA-GGGNGTLLV-SKDGGKT-WEKDPVGEEVPSNFYKIVFLDP-E-KGFVL 319 (334)
T ss_pred c-cccccCCccccccceeeEEEcCCCC-EEE-EcCCCeEEE-eCCCCCC-CeECCcCCCCCcceEEEEEeCC-C-ceEEE
Confidence 1 111111 123578899999876 444 455775543 3333332 1222 122235777887764 4 44556
Q ss_pred ecCCcEEEEecC
Q 021121 300 GWDELVYVWQQG 311 (317)
Q Consensus 300 ~~dg~i~~w~~~ 311 (317)
+..|.|.-|+-.
T Consensus 320 G~~G~il~~~~~ 331 (334)
T PRK13684 320 GQRGVLLRYVGS 331 (334)
T ss_pred CCCceEEEecCC
Confidence 678988877644
No 430
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.81 E-value=0.71 Score=36.50 Aligned_cols=150 Identities=15% Similarity=0.076 Sum_probs=87.9
Q ss_pred ceEEEEEecCCCCEEEEE--cCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEe-CCCCCc
Q 021121 108 EVHSADYNPTRRDSFITS--SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD-VREMGS 184 (317)
Q Consensus 108 ~v~~~~~~~~~~~~l~~~--~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~ 184 (317)
.+.+.++++++..+.+.. .....+.++.. +....... ....+..-.|+++ +.+.+....+...+++. ..+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~-g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPD-GWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCC-CCEEEEEcCCCceEEEEecCCCcc
Confidence 688899999998444444 23345555544 33333322 2336888899998 77777766666666663 333322
Q ss_pred e-eeecc--CccceEEEEecCCCCcEEEEEe---cCCcEEEEEccCCC--------ccEEEEecCCCceeEEEecCCCCe
Q 021121 185 T-MIIPA--HEFEILACDWNKYDDCLIASAS---VDKSIKIWDVRNYR--------VPIAVLNGHGYAVRKVKFSPHRRN 250 (317)
Q Consensus 185 ~-~~~~~--~~~~v~~i~~~~~~~~~l~~~~---~d~~i~v~d~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~ 250 (317)
. ..+.. ....|.++.++| ++..++... .++.|.+=-+.... .+..........++.+.|.+++.
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~- 178 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST- 178 (253)
T ss_pred eeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE-
Confidence 1 12221 122899999999 888777665 34667766543211 11222223346889999999998
Q ss_pred eEEeee-cCCeEEE
Q 021121 251 LLASCS-YDMTVCL 263 (317)
Q Consensus 251 ~l~~~~-~d~~i~v 263 (317)
+++.+. .++.+..
T Consensus 179 L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 179 LVVLGRSAGGPVVR 192 (253)
T ss_pred EEEEeCCCCCceeE
Confidence 454444 3443333
No 431
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.99 Score=38.10 Aligned_cols=141 Identities=11% Similarity=0.139 Sum_probs=88.1
Q ss_pred CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCC-CCceeeccCCcceEEEEE
Q 021121 36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTA-NPIRSLHEHTREVHSADY 114 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~-~~~~~~~~~~~~v~~~~~ 114 (317)
.|.+.=|.....++....-......++|.++.|++|. +.+|+--.+.+|.+++...++.. ......+.....|....|
T Consensus 42 SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W 120 (657)
T KOG2377|consen 42 SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCW 120 (657)
T ss_pred cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEE
Confidence 4566677776665544444455677799999999997 69999999999999998543111 111222334556899999
Q ss_pred ecCCCCEEEEEcCCCEEEEEEcCCC-ceeEEeeccccceEEEEEecCCCCeEE-EEe-CCCeEEEEeCCC
Q 021121 115 NPTRRDSFITSSWDDTVKLWTVDRP-TSVRTFKEHAYCVYNATWNPRHSDVFC-SAS-GDCTLRIWDVRE 181 (317)
Q Consensus 115 ~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~-~dg~i~i~d~~~ 181 (317)
.... -++.....| +-+|..... ..++..+.++..|+=..|.++ .+.++ +.+ ..+.+.=+-+++
T Consensus 121 ~~s~--e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~e-t~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 121 TSST--EIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPE-TAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred ecCe--eEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccc-cceEeeeccccccccccEEEee
Confidence 8764 455555433 555554432 334455667778888889888 44433 333 333444444444
No 432
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.77 E-value=0.44 Score=42.47 Aligned_cols=105 Identities=18% Similarity=0.322 Sum_probs=67.2
Q ss_pred CCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEec--CCCCCeEEEEEcCCeEEEEEeC------
Q 021121 20 ESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWS--ESHDSLLIAAVADGSVKIYDTA------ 91 (317)
Q Consensus 20 ~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~i~v~~~~------ 91 (317)
-+++++.... ...+.|||..... +.....+...+.|.++.|. |+++ .+++.+....|.+|--.
T Consensus 40 ~~k~a~V~~~------~~~LtIWD~~~~~--lE~~~~f~~~~~I~dLDWtst~d~q-siLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 40 IKKIAVVDSS------RSELTIWDTRSGV--LEYEESFSEDDPIRDLDWTSTPDGQ-SILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred cCcEEEEECC------CCEEEEEEcCCcE--EEEeeeecCCCceeeceeeecCCCC-EEEEEEcCcEEEEEEccchhhhc
Confidence 3555555443 5689999998765 4444444668899999996 5775 45555567788888532
Q ss_pred CCCCCCCceee--ccCC-cceEEEEEecCCCCEEEEEcCCCEEEEEEc
Q 021121 92 LPPTANPIRSL--HEHT-REVHSADYNPTRRDSFITSSWDDTVKLWTV 136 (317)
Q Consensus 92 ~~~~~~~~~~~--~~~~-~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~ 136 (317)
......++..+ ..|. .+|.+..|.++|. +++|+ .+.+.|+|-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~--LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGT--LVVGS-GNQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCe--EEEEe-CCEEEEECC
Confidence 11122333332 2343 6899999999985 55544 357888874
No 433
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.77 E-value=0.26 Score=46.73 Aligned_cols=153 Identities=14% Similarity=0.155 Sum_probs=92.1
Q ss_pred EEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEec--------CCCCcEEEEEecCCcEEEEEccC
Q 021121 153 YNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWN--------KYDDCLIASASVDKSIKIWDVRN 224 (317)
Q Consensus 153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~--------~~~~~~l~~~~~d~~i~v~d~~~ 224 (317)
..+-+-|.-+..- .+.|+.+.+|+.+++.....+.+.+..|..+..- |.-..+|+.++ --.|.++-+..
T Consensus 82 ~~mGiFpeI~RaW--iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~ 158 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAW--ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSF 158 (1311)
T ss_pred eeeccchhhcceE--EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEe
Confidence 3444445423333 2458899999999987777777766666666532 21122333333 44566654432
Q ss_pred CCcc--E------EEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccc--c----------------------ce
Q 021121 225 YRVP--I------AVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE--D----------------------AL 272 (317)
Q Consensus 225 ~~~~--~------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~--~----------------------~~ 272 (317)
.+.+ . ..+...+..|+++....+|+ ++++ |.|| .+|.+.-. . .+
T Consensus 159 ~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR-IF~~-G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~ 234 (1311)
T KOG1900|consen 159 DEFTGELSIFNTSFKISVDGVSVNCITYTENGR-IFFA-GRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSL 234 (1311)
T ss_pred ccccCcccccccceeeecCCceEEEEEeccCCc-EEEe-ecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhh
Confidence 2110 1 12223356789999888887 5554 5566 45554211 0 11
Q ss_pred eeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121 273 VGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 273 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~ 313 (317)
......+..+|..+..... .+++.+-+..|+|.+|++..+
T Consensus 235 ~~~~~~~~dpI~qi~ID~S-R~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 235 LSVPGSSKDPIRQITIDNS-RNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred hcCCCCCCCcceeeEeccc-cceeeeeccCceEEEEEccCC
Confidence 1122256779999999877 679999999999999999874
No 434
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.77 E-value=0.57 Score=40.05 Aligned_cols=150 Identities=13% Similarity=0.074 Sum_probs=90.5
Q ss_pred EEEecCCCCeEE-EEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCC-------CCcEEEEEecCCcEEEEEccCCC
Q 021121 155 ATWNPRHSDVFC-SASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKY-------DDCLIASASVDKSIKIWDVRNYR 226 (317)
Q Consensus 155 ~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~-------~~~~l~~~~~d~~i~v~d~~~~~ 226 (317)
+-.+.++..+++ .++....++-.|++.|+.+.....+..- -+.+.|. ..+.| +|-.+..|.-.|.|-..
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~g 548 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARG 548 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccC
Confidence 333333345444 4666677888999999988888766654 4666662 12233 34456667777776543
Q ss_pred ccEEEEec----CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecC
Q 021121 227 VPIAVLNG----HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWD 302 (317)
Q Consensus 227 ~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 302 (317)
..+..... ......+..-...| +++.++..|-|++||-- +......+.+....|..+..+.+|..+|+|| .
T Consensus 549 NKi~v~esKdY~tKn~Fss~~tTesG--yIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k 623 (776)
T COG5167 549 NKIKVVESKDYKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILATC--K 623 (776)
T ss_pred CceeeeeehhccccccccccccccCc--eEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEee--c
Confidence 22222211 11122233333333 79999999999999944 3334455667778899999999844455555 3
Q ss_pred CcEEEEecCC
Q 021121 303 ELVYVWQQGM 312 (317)
Q Consensus 303 g~i~~w~~~~ 312 (317)
..+.+-|+..
T Consensus 624 ~yllL~d~~i 633 (776)
T COG5167 624 NYLLLTDVPI 633 (776)
T ss_pred ceEEEEeccc
Confidence 5566666543
No 435
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.74 E-value=0.00094 Score=55.50 Aligned_cols=144 Identities=12% Similarity=0.170 Sum_probs=98.0
Q ss_pred cceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCcee
Q 021121 107 REVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM 186 (317)
Q Consensus 107 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 186 (317)
.......|.|.+.+ ++.++.+..+..||-. ++...... .++....++|..++...++.+-..+.+.+||+.+....
T Consensus 35 v~pi~~~w~~e~~n-lavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq- 110 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHN-LAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ- 110 (615)
T ss_pred cccceeeEecCCCc-eehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-
Confidence 33445678888884 7777778888899854 44443433 45567788898876667777888899999999764221
Q ss_pred eec-cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecC
Q 021121 187 IIP-AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYD 258 (317)
Q Consensus 187 ~~~-~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 258 (317)
++. +....-.-+.|++ ....++.+...|.+.+++....+. ....-.|...++++++.+.+. .+.++.|
T Consensus 111 qLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~-iiv~Gkh~RRgtq~av~lEd~--vil~dcd 179 (615)
T KOG2247|consen 111 QLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRR-IIVMGKHQRRGTQIAVTLEDY--VILCDCD 179 (615)
T ss_pred HHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhh-hhhhcccccceeEEEecccce--eeecCcH
Confidence 121 1111112277888 888888888999999999988664 333333888899999999874 4444444
No 436
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.48 E-value=0.0042 Score=55.63 Aligned_cols=79 Identities=9% Similarity=0.169 Sum_probs=47.0
Q ss_pred CceEEEEecCCCCCcceee----eeecCCCCeeEEEecC---CCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcc
Q 021121 36 NGRVHVLDLSPAAPALTEL----VAFDTADGVYDLAWSE---SHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTRE 108 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~ 108 (317)
-|.+.+|+++--+..+.+. ........+.-+.|.| +. .++..+-.++.|++...+.. ....+.+|...
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~-~~ic~~~~~~~i~lL~~~ra----~~~l~rsHs~~ 226 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNK-VYICYGLKGGEIRLLNINRA----LRSLFRSHSQR 226 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeeccccccc-ceeeeccCCCceeEeeechH----HHHHHHhcCCC
Confidence 4678899986432222211 1112233445566665 43 57888888899999887653 22445568888
Q ss_pred eEEEEEecCCC
Q 021121 109 VHSADYNPTRR 119 (317)
Q Consensus 109 v~~~~~~~~~~ 119 (317)
+..++|...|-
T Consensus 227 ~~d~a~~~~g~ 237 (1283)
T KOG1916|consen 227 VTDMAFFAEGV 237 (1283)
T ss_pred cccHHHHhhch
Confidence 87777655543
No 437
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=1.9 Score=38.82 Aligned_cols=197 Identities=14% Similarity=0.149 Sum_probs=98.4
Q ss_pred CCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc
Q 021121 61 DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT 140 (317)
Q Consensus 61 ~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 140 (317)
++..++..+|..-.-+. +.--.|+||+... ..+....-..+++..+.|+.+. .|+....+|++++|++-..
T Consensus 44 gGpIAV~r~p~~~~~~~--~a~~~I~If~~sG----~lL~~~~w~~~~lI~mgWs~~e--eLI~v~k~g~v~Vy~~~ge- 114 (829)
T KOG2280|consen 44 GGPIAVTRSPSKLVPLY--SARPYIRIFNISG----QLLGRILWKHGELIGMGWSDDE--ELICVQKDGTVHVYGLLGE- 114 (829)
T ss_pred CCceEEEeccccccccc--ccceeEEEEeccc----cchHHHHhcCCCeeeecccCCc--eEEEEeccceEEEeecchh-
Confidence 34445555553211111 3345688888653 4444444344588899999875 5888889999999998643
Q ss_pred eeEE--e--eccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc---CccceEEEEecCCC--CcEEEEE
Q 021121 141 SVRT--F--KEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA---HEFEILACDWNKYD--DCLIASA 211 (317)
Q Consensus 141 ~~~~--~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~i~~~~~~--~~~l~~~ 211 (317)
.+.. . ......|..+.+..+ | ++.-..+|.+.+-.-.....+..++. ...+-.|-...+.. ...++-.
T Consensus 115 ~ie~~svg~e~~~~~I~ec~~f~~-G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v 191 (829)
T KOG2280|consen 115 FIESNSVGFESQMSDIVECRFFHN-G--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDV 191 (829)
T ss_pred hhcccccccccccCceeEEEEecC-c--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEee
Confidence 2222 1 222334555555543 3 33334445554433222212222221 11111222111101 1111111
Q ss_pred ecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121 212 SVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED 270 (317)
Q Consensus 212 ~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~ 270 (317)
...-...++-..........+....+.+..+..||+.+ +|+--...|.|.+-+....+
T Consensus 192 ~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~-~laLyt~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 192 DVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRR-FLALYTETGKIWVVSIDLSQ 249 (829)
T ss_pred chhhhhcccceecccccccccCCCCceEEEEEEcCCcc-eEEEEecCCcEEEEecchhh
Confidence 10001122222222222233333345678899999998 68888889999888876655
No 438
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.42 E-value=0.37 Score=40.76 Aligned_cols=86 Identities=19% Similarity=0.152 Sum_probs=57.9
Q ss_pred ccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEE-EEEecCCC---------------C--e
Q 021121 103 HEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYN-ATWNPRHS---------------D--V 164 (317)
Q Consensus 103 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~---------------~--~ 164 (317)
......+.+++.+|.+. +.++...=|.|.++|+.++..++.+++..+.-.. +....... . +
T Consensus 304 ~D~~R~~~~i~~sP~~~-laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 304 PDSKREGESICLSPSGR-LAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred ccCCceEEEEEECCCCC-EEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 34556688999999987 7777777799999999999888877765432111 11000000 1 2
Q ss_pred EEEEeCCCeEEEEeCCCCCceeeec
Q 021121 165 FCSASGDCTLRIWDVREMGSTMIIP 189 (317)
Q Consensus 165 l~~~~~dg~i~i~d~~~~~~~~~~~ 189 (317)
++-+-.-|.|.+|.++++..+..+.
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEE
Confidence 3345678899999999887766554
No 439
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.87 Score=34.16 Aligned_cols=174 Identities=13% Similarity=0.123 Sum_probs=91.2
Q ss_pred CeEEEEEc--CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccc
Q 021121 74 SLLIAAVA--DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYC 151 (317)
Q Consensus 74 ~~l~~~~~--dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 151 (317)
.++.+.+. ...|++||+.++ +.+....-....+..=-...-+.....-.-.+|.-..+|.++.+++..+. .++.
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~g---q~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~Ge 132 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTG---QEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGE 132 (262)
T ss_pred EEEEeccccccceeEEEeccCc---eEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCc
Confidence 45555543 346999999866 32222111111111101111122233334457888899998888877765 3455
Q ss_pred eEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc--Ccc---ceEEEEecCCCCcEEEEEecCCcEEEEEccCCC
Q 021121 152 VYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA--HEF---EILACDWNKYDDCLIASASVDKSIKIWDVRNYR 226 (317)
Q Consensus 152 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~---~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 226 (317)
-+.++.. +..++.+....+++.-|.++.....++.. ... .++.+.|- +|.++|-.-.+..|...|..+++
T Consensus 133 GWgLt~d---~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGr 207 (262)
T COG3823 133 GWGLTSD---DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSGR 207 (262)
T ss_pred ceeeecC---CcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCCCc
Confidence 5666543 33355555566777777765544333221 111 23344444 45444444444444444444443
Q ss_pred c-----------cEEEEecCCCceeEEEecCCCCeeEEeee
Q 021121 227 V-----------PIAVLNGHGYAVRKVKFSPHRRNLLASCS 256 (317)
Q Consensus 227 ~-----------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 256 (317)
. .+..-..|....+.+++.|++.+++++|-
T Consensus 208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred EEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 2 11122234556789999999877888874
No 440
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.9 Score=34.10 Aligned_cols=173 Identities=9% Similarity=0.029 Sum_probs=90.2
Q ss_pred EEEEEcC--CCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEE
Q 021121 121 SFITSSW--DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILAC 198 (317)
Q Consensus 121 ~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i 198 (317)
++.+.+. ...|++||+.+++.+..-+-....+..--...-+.....-.-.+|.-..+|.++.+.+..+. .++.-..+
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGWgL 136 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGWGL 136 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcceee
Confidence 6666554 34799999999987766543321121111111112333345568888899998887776665 33344555
Q ss_pred EecCCCCcEEEEEecCCcEEEEEccCCCccEEE-EecCCCc---eeEEEecCCCCeeEEeeecCCeEEEEeccccc----
Q 021121 199 DWNKYDDCLIASASVDKSIKIWDVRNYRVPIAV-LNGHGYA---VRKVKFSPHRRNLLASCSYDMTVCLWDFMVED---- 270 (317)
Q Consensus 199 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~---v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~---- 270 (317)
+. ++.-|+.+....+++.-|.++....-.. ......+ ++.+.|- +|. +.|-.=.+..|...|..+++
T Consensus 137 t~---d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~-lyANVw~t~~I~rI~p~sGrV~~w 211 (262)
T COG3823 137 TS---DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGE-LYANVWQTTRIARIDPDSGRVVAW 211 (262)
T ss_pred ec---CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccE-EEEeeeeecceEEEcCCCCcEEEE
Confidence 54 3333555555556777676654321111 1111122 2334443 333 33333333334444444443
Q ss_pred -------ceeeeeecccceeEeEEEEeccCCeEEEe
Q 021121 271 -------ALVGRYDHHTEFAVGVDMSVLVEGLLAST 299 (317)
Q Consensus 271 -------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 299 (317)
.....-..|....++|++.|+.++++++|
T Consensus 212 idlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 212 IDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 11122223455678999999955677776
No 441
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.19 E-value=1.6 Score=36.50 Aligned_cols=191 Identities=16% Similarity=0.178 Sum_probs=104.8
Q ss_pred CCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEec----CCCCCe-EEEEEc-C---CeEEEEEe
Q 021121 20 ESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWS----ESHDSL-LIAAVA-D---GSVKIYDT 90 (317)
Q Consensus 20 ~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~-l~~~~~-d---g~i~v~~~ 90 (317)
...+++++.+ .+-+.+||++... ++.+ . .+..+.+..- -.+... |++++. + ..|++|.+
T Consensus 67 ~kSlIigTdK------~~GL~VYdL~Gk~--lq~~---~-~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~i 134 (381)
T PF02333_consen 67 AKSLIIGTDK------KGGLYVYDLDGKE--LQSL---P-VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRI 134 (381)
T ss_dssp GG-EEEEEET------TTEEEEEETTS-E--EEEE-----SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEE
T ss_pred ccceEEEEeC------CCCEEEEcCCCcE--EEee---c-CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEe
Confidence 4557777776 7889999998654 2222 1 2233333221 123222 444443 2 46999998
Q ss_pred CCCCCCCCceeec-------cCCcceEEEEEe--c-CCCCEEEEEcCCCEEEEEEcC---CC----ceeEEeeccccceE
Q 021121 91 ALPPTANPIRSLH-------EHTREVHSADYN--P-TRRDSFITSSWDDTVKLWTVD---RP----TSVRTFKEHAYCVY 153 (317)
Q Consensus 91 ~~~~~~~~~~~~~-------~~~~~v~~~~~~--~-~~~~~l~~~~~dg~v~iwd~~---~~----~~~~~~~~~~~~v~ 153 (317)
.... ..+..+. .....+..+|+. + ++..+++....+|.+..|.+. .+ +.++++.. .+.+.
T Consensus 135 d~~~--g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~E 211 (381)
T PF02333_consen 135 DPDT--GELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPE 211 (381)
T ss_dssp ETTT--TEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EE
T ss_pred cCCC--CcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcce
Confidence 7421 1222221 122346777774 3 355577788889999888775 22 34666664 44688
Q ss_pred EEEEecCCCCeEEEEeCCCeEEEEeCCCCC--ceeee---c--cCccceEEEEec--CC-CCcEEEEEecCCcEEEEEcc
Q 021121 154 NATWNPRHSDVFCSASGDCTLRIWDVREMG--STMII---P--AHEFEILACDWN--KY-DDCLIASASVDKSIKIWDVR 223 (317)
Q Consensus 154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~---~--~~~~~v~~i~~~--~~-~~~~l~~~~~d~~i~v~d~~ 223 (317)
.+..... ...|+.+-++.-|.-|+.+... ....+ . .....+-.++.- +. .+.+|++.-.+++..+|+.+
T Consensus 212 GCVVDDe-~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~ 290 (381)
T PF02333_consen 212 GCVVDDE-TGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDRE 290 (381)
T ss_dssp EEEEETT-TTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESS
T ss_pred EEEEecc-cCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecC
Confidence 8888877 7788889999888888876321 11111 1 123456566553 21 23345555566789999987
Q ss_pred CCC
Q 021121 224 NYR 226 (317)
Q Consensus 224 ~~~ 226 (317)
...
T Consensus 291 ~~~ 293 (381)
T PF02333_consen 291 GPN 293 (381)
T ss_dssp TT-
T ss_pred CCC
Confidence 643
No 442
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.14 E-value=2.9 Score=39.27 Aligned_cols=105 Identities=13% Similarity=0.089 Sum_probs=61.0
Q ss_pred CCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCC-----CCeEEEEEcCCeEEEEEeCCCC
Q 021121 20 ESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESH-----DSLLIAAVADGSVKIYDTALPP 94 (317)
Q Consensus 20 ~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~v~~~~~~~ 94 (317)
..+++++.+ +|.+..+.....+..............+.|+++.++. .++++.++.|+.++++.+...
T Consensus 549 r~qiVvalS-------ngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~- 620 (1205)
T KOG1898|consen 549 RRQIVVALS-------NGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPS- 620 (1205)
T ss_pred ceEEEEEcc-------CCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCc-
Confidence 456666665 6677777776444222222223445678999998764 257999999999999998744
Q ss_pred CCCCcee--eccCCcceEEEEEec---CC-----CCEEEEEcCCCEEEEE
Q 021121 95 TANPIRS--LHEHTREVHSADYNP---TR-----RDSFITSSWDDTVKLW 134 (317)
Q Consensus 95 ~~~~~~~--~~~~~~~v~~~~~~~---~~-----~~~l~~~~~dg~v~iw 134 (317)
..+.. .++-..++.++.+-+ ++ ..++.+|-.+|.+.-+
T Consensus 621 --d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~ 668 (1205)
T KOG1898|consen 621 --DCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRF 668 (1205)
T ss_pred --ceEEEccccccCCCccceEEEEecccCCccceeEEEEecccccEEEEE
Confidence 22222 223344444444422 22 2355666666655443
No 443
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.13 E-value=1 Score=34.03 Aligned_cols=135 Identities=18% Similarity=0.272 Sum_probs=76.7
Q ss_pred CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC---C---eEEEE-EeCCC-CCCCCce-eec---
Q 021121 36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD---G---SVKIY-DTALP-PTANPIR-SLH--- 103 (317)
Q Consensus 36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g---~i~v~-~~~~~-~~~~~~~-~~~--- 103 (317)
...|.+|++.... .+.+..+..-+.|..+.++..|+ ++++--.+ . .+|+| +.+.. ....++. .+-
T Consensus 37 g~~Vev~~l~~~~--~~~~~~F~Tv~~V~~l~y~~~GD-YlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~ 113 (215)
T PF14761_consen 37 GCKVEVYDLEQEE--CPLLCTFSTVGRVLQLVYSEAGD-YLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRIAGHR 113 (215)
T ss_pred CCEEEEEEcccCC--CceeEEEcchhheeEEEeccccc-eEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEEcccc
Confidence 5689999998433 56677777888999999999985 88775433 2 56665 22111 0111111 010
Q ss_pred ------------------cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce-eE-----Eee-----c-cccceE
Q 021121 104 ------------------EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-VR-----TFK-----E-HAYCVY 153 (317)
Q Consensus 104 ------------------~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~-----~~~-----~-~~~~v~ 153 (317)
.-+.++.+++..|... -|+.|+ ++.+.+|.+..... .. .+. . ..-.+.
T Consensus 114 v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG-~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~ 191 (215)
T PF14761_consen 114 VTPSFNESSKDQLEIIELPLSEPPLCIACCPVTG-NLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPT 191 (215)
T ss_pred cccCCCCccccceEEEEecCCCCCCEEEecCCCC-CEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheecCceEE
Confidence 1234667777777666 466666 46888998764322 11 111 1 122355
Q ss_pred EEEEecCCCCeEEEEeCCCeEEEEeC
Q 021121 154 NATWNPRHSDVFCSASGDCTLRIWDV 179 (317)
Q Consensus 154 ~~~~~~~~~~~l~~~~~dg~i~i~d~ 179 (317)
.+++. +.++|..+ +-.++++.+
T Consensus 192 ~v~ic---~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 192 QVAIC---EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred EEEEE---eeEEEEec-CCEEEEEEE
Confidence 66665 44565444 445666554
No 444
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=95.02 E-value=1.8 Score=36.12 Aligned_cols=12 Identities=8% Similarity=0.055 Sum_probs=8.6
Q ss_pred CEEEEEEcCCCc
Q 021121 129 DTVKLWTVDRPT 140 (317)
Q Consensus 129 g~v~iwd~~~~~ 140 (317)
..+.+||..+.+
T Consensus 168 ~~v~~YDp~t~~ 179 (346)
T TIGR03547 168 KNVLSYDPSTNQ 179 (346)
T ss_pred ceEEEEECCCCc
Confidence 468888987653
No 445
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.02 E-value=3 Score=38.75 Aligned_cols=192 Identities=10% Similarity=-0.002 Sum_probs=106.2
Q ss_pred EEEEEcCCCEEEEEEcCCCceeEEeeccccc--------eEEEEEecC---------------CCCeEEEEeCCCeEEEE
Q 021121 121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYC--------VYNATWNPR---------------HSDVFCSASGDCTLRIW 177 (317)
Q Consensus 121 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--------v~~~~~~~~---------------~~~~l~~~~~dg~i~i~ 177 (317)
.++.++.++.|.-.|.++++.+.++...... ...+.+... ....++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 6788888899999999999988777532210 122333211 13477788899999999
Q ss_pred eCCCCCceeeeccCccce-------------EEEEecCC-CCcEEEEEec----------CCcEEEEEccCCCccEEEEe
Q 021121 178 DVREMGSTMIIPAHEFEI-------------LACDWNKY-DDCLIASASV----------DKSIKIWDVRNYRVPIAVLN 233 (317)
Q Consensus 178 d~~~~~~~~~~~~~~~~v-------------~~i~~~~~-~~~~l~~~~~----------d~~i~v~d~~~~~~~~~~~~ 233 (317)
|.++++....+.. ...+ ..+.-.|. .+..+++|+. +|.|+-+|.++++..-....
T Consensus 276 DA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 276 DADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDP 354 (764)
T ss_pred ECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEec
Confidence 9999988866532 1111 01111110 1334555542 68899999999875322221
Q ss_pred cC---------------C-Cce-eEEEecCCCCeeEEeee------------------cCCeEEEEecccccceeeeeec
Q 021121 234 GH---------------G-YAV-RKVKFSPHRRNLLASCS------------------YDMTVCLWDFMVEDALVGRYDH 278 (317)
Q Consensus 234 ~~---------------~-~~v-~~~~~~~~~~~~l~~~~------------------~d~~i~vwd~~~~~~~~~~~~~ 278 (317)
+. . ..+ ..++++|+.. +++.+. ..+.|.-.|.++++..-.....
T Consensus 355 g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~g-lvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~ 433 (764)
T TIGR03074 355 GNPDPTAPPAPGETYTRNTPNSWSVASYDEKLG-LVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV 433 (764)
T ss_pred CCCCcccCCCCCCEeccCCCCccCceEEcCCCC-eEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence 10 0 011 2345555444 232211 2345666788777743322221
Q ss_pred ccc--------eeEeEEEEeccCC---eEEEeecCCcEEEEecCCCC
Q 021121 279 HTE--------FAVGVDMSVLVEG---LLASTGWDELVYVWQQGMDP 314 (317)
Q Consensus 279 ~~~--------~v~~~~~~~~~~~---~l~s~~~dg~i~~w~~~~~~ 314 (317)
|.. ...-+.+...+++ .++.++.+|.+.+.|-.+.+
T Consensus 434 ~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 434 HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 211 1111222221132 78889999999999987653
No 446
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.97 E-value=0.0028 Score=52.82 Aligned_cols=146 Identities=13% Similarity=0.181 Sum_probs=97.9
Q ss_pred eeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCcee
Q 021121 63 VYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSV 142 (317)
Q Consensus 63 v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 142 (317)
.....|-|.+.+ ++.++.+..+..||-.. +..... ...+....++|..++...++.+-..+.+.+||+.+....
T Consensus 37 pi~~~w~~e~~n-lavaca~tiv~~YD~ag----q~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 37 PIIHRWRPEGHN-LAVACANTIVIYYDKAG----QVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred cceeeEecCCCc-eehhhhhhHHHhhhhhc----ceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence 344567787754 77777888899998542 222222 235667788998888766777788899999999764221
Q ss_pred E-Eee-ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEE
Q 021121 143 R-TFK-EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKI 219 (317)
Q Consensus 143 ~-~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v 219 (317)
. .+. .+... -+.|++. ...++.+...|.+.+++..+.+.....-.|...+.++++.+ .+ +.+.++.|..+.+
T Consensus 111 qLE~gg~~s~s--ll~wsKg-~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l-Ed-~vil~dcd~~L~v 184 (615)
T KOG2247|consen 111 QLESGGTSSKS--LLAWSKG-TPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL-ED-YVILCDCDNTLSV 184 (615)
T ss_pred HHhccCcchHH--HHhhccC-CccccccccccceEEEeccchhhhhhhcccccceeEEEecc-cc-eeeecCcHHHHHH
Confidence 1 111 12222 2678876 66777888999999999887766655555888899999998 44 4444555554433
No 447
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=94.90 E-value=2 Score=36.25 Aligned_cols=12 Identities=8% Similarity=0.039 Sum_probs=8.6
Q ss_pred CEEEEEEcCCCc
Q 021121 129 DTVKLWTVDRPT 140 (317)
Q Consensus 129 g~v~iwd~~~~~ 140 (317)
..+.+||..+.+
T Consensus 189 ~~v~~YD~~t~~ 200 (376)
T PRK14131 189 KEVLSYDPSTNQ 200 (376)
T ss_pred ceEEEEECCCCe
Confidence 358889987654
No 448
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.76 E-value=0.89 Score=31.47 Aligned_cols=115 Identities=14% Similarity=0.164 Sum_probs=70.2
Q ss_pred EEecCCCCCeEEEEEcCCeEEEEEeCCCC-----CCCCceeeccCCcceEEEEEec----CCCCEEEEEcCCCEEEEEEc
Q 021121 66 LAWSESHDSLLIAAVADGSVKIYDTALPP-----TANPIRSLHEHTREVHSADYNP----TRRDSFITSSWDDTVKLWTV 136 (317)
Q Consensus 66 ~~~~~~~~~~l~~~~~dg~i~v~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~dg~v~iwd~ 136 (317)
-+|....+ .|++++..|.|.|.+..... ....+..+. -...|++++-.+ ++...|+.|+ ...+..||+
T Consensus 4 GkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 4 GKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEeCCCce-eEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 35666654 78888889999999876432 112233333 456777776543 2345777777 468999999
Q ss_pred CCCceeEEeeccccceEEEEEecCC--CCeEEEEeCCCeEEEEeCCCCCc
Q 021121 137 DRPTSVRTFKEHAYCVYNATWNPRH--SDVFCSASGDCTLRIWDVREMGS 184 (317)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~ 184 (317)
.....+..-. -...++++.+-.-+ ..-++..+.+..|.-||.+..+.
T Consensus 81 ~~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 81 ENNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred ccCchhhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 8876554333 34557777663221 23344555577888888664443
No 449
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.71 E-value=0.025 Score=51.02 Aligned_cols=179 Identities=12% Similarity=0.087 Sum_probs=100.2
Q ss_pred CCCEEEEEEcCCCce-eEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCC--CCceee-----eccCccceEEE
Q 021121 127 WDDTVKLWTVDRPTS-VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE--MGSTMI-----IPAHEFEILAC 198 (317)
Q Consensus 127 ~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~-----~~~~~~~v~~i 198 (317)
..+.+++-+..+... -..+++..+.+-.+.|...+...+. -.-|.+.+||+.- |+.... ......++.-+
T Consensus 109 ~~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V 186 (1283)
T KOG1916|consen 109 MENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLV 186 (1283)
T ss_pred hhhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCccee
Confidence 345677766544321 1223456677888887654333332 3457788998763 332222 22334455666
Q ss_pred EecCC--CCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEE-----------ecCCCCeeEEeeecCCeEEEEe
Q 021121 199 DWNKY--DDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVK-----------FSPHRRNLLASCSYDMTVCLWD 265 (317)
Q Consensus 199 ~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~~l~~~~~d~~i~vwd 265 (317)
.|.|. +.-++..+..++.|++........ ..+.+|...+..++ .+|||. .++.+..||.++.|.
T Consensus 187 ~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 187 SWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQ 263 (1283)
T ss_pred eecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceee
Confidence 67663 445666677788888887765432 34445766555543 589998 799999999998887
Q ss_pred ccccc----ceeeeeecccc-eeEeEEEEecc------C--CeEEEee-cCCcEEEEec
Q 021121 266 FMVED----ALVGRYDHHTE-FAVGVDMSVLV------E--GLLASTG-WDELVYVWQQ 310 (317)
Q Consensus 266 ~~~~~----~~~~~~~~~~~-~v~~~~~~~~~------~--~~l~s~~-~dg~i~~w~~ 310 (317)
+.-.. .++...+.|.+ +-.|.-+..+. + .++++++ ....+++|.-
T Consensus 264 iyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 264 IYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred eeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 64322 23444555552 22222232210 0 1344443 4567888864
No 450
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.69 E-value=1.4 Score=33.37 Aligned_cols=141 Identities=15% Similarity=0.216 Sum_probs=83.2
Q ss_pred CeEEEEeCCCeEEEEeCCCC--CceeeeccCccceEEEEecCCCCcEEEEEecCC------cEEEE-EccC---CCccEE
Q 021121 163 DVFCSASGDCTLRIWDVREM--GSTMIIPAHEFEILACDWNKYDDCLIASASVDK------SIKIW-DVRN---YRVPIA 230 (317)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~------~i~v~-d~~~---~~~~~~ 230 (317)
+.|..+...+.|.+|++.+. +....+..- +.|..+.++. .|+++++--.+. .+|+| +.+. ...++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 44545577788999999833 445566544 6789999999 899999875432 45665 2221 111222
Q ss_pred -EEec---------------------CCCceeEEEecCCCCeeEEeeecCCeEEEEeccccccee---ee--e-----ec
Q 021121 231 -VLNG---------------------HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALV---GR--Y-----DH 278 (317)
Q Consensus 231 -~~~~---------------------~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~---~~--~-----~~ 278 (317)
.+.+ -..++.+++..|-..+ |+.|+ ++++.+|.+....... .. + ..
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~ 184 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDH 184 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEEEEEecccccEEechhhhhhe
Confidence 1112 2346678888886665 44454 6679999876543100 11 1 11
Q ss_pred cc-ceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121 279 HT-EFAVGVDMSVLVEGLLASTGWDELVYVWQQG 311 (317)
Q Consensus 279 ~~-~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~ 311 (317)
|. -....+++. +.++|..+ +-.+++.++.
T Consensus 185 ~~~~~p~~v~ic---~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 185 IDNFKPTQVAIC---EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred ecCceEEEEEEE---eeEEEEec-CCEEEEEEEe
Confidence 22 235667777 45777765 5567777764
No 451
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.68 E-value=3.2 Score=37.50 Aligned_cols=199 Identities=12% Similarity=0.160 Sum_probs=98.6
Q ss_pred eEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecC
Q 021121 38 RVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPT 117 (317)
Q Consensus 38 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 117 (317)
.|+||++.... +..+. +.|. .+-.+.|+.+. .|++...+|++.+|++........-.........|..+.+..+
T Consensus 65 ~I~If~~sG~l--L~~~~-w~~~-~lI~mgWs~~e--eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~ 138 (829)
T KOG2280|consen 65 YIRIFNISGQL--LGRIL-WKHG-ELIGMGWSDDE--ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHN 138 (829)
T ss_pred eEEEEeccccc--hHHHH-hcCC-CeeeecccCCc--eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecC
Confidence 57788775432 22221 2333 78889999874 6777889999999998643111110112333455666666655
Q ss_pred CCCEEEEEcCCCEEEEEEcCCCceeEEeec---cccceEEEEEecCCCCeEEEEeCCCe--EEEEeCCCC-CceeeeccC
Q 021121 118 RRDSFITSSWDDTVKLWTVDRPTSVRTFKE---HAYCVYNATWNPRHSDVFCSASGDCT--LRIWDVREM-GSTMIIPAH 191 (317)
Q Consensus 118 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~-~~~~~~~~~ 191 (317)
| ++.-..+|.+.+-+-.+....++++. ...+-.|-...+++......-.-+-. ..++..... .....+...
T Consensus 139 G---Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~ 215 (829)
T KOG2280|consen 139 G---VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWP 215 (829)
T ss_pred c---eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCC
Confidence 4 33333445555443222222333332 11111222222221111111111100 111211111 112222223
Q ss_pred ccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe--cCCCceeEEEecCCC
Q 021121 192 EFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN--GHGYAVRKVKFSPHR 248 (317)
Q Consensus 192 ~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~ 248 (317)
...+..+..+| +.++|+--...|.|.+-+....+. +..+. .|. +...++|.-+.
T Consensus 216 ~~~~~ki~VS~-n~~~laLyt~~G~i~~vs~D~~~~-lce~~~~~~~-~p~qm~Wcgnd 271 (829)
T KOG2280|consen 216 NSSVVKISVSP-NRRFLALYTETGKIWVVSIDLSQI-LCEFNCTDHD-PPKQMAWCGND 271 (829)
T ss_pred CceEEEEEEcC-CcceEEEEecCCcEEEEecchhhh-hhccCCCCCC-chHhceeecCC
Confidence 35678899999 899999999999999988765443 33332 222 23356665443
No 452
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=94.68 E-value=2.1 Score=35.31 Aligned_cols=102 Identities=7% Similarity=0.087 Sum_probs=49.9
Q ss_pred EEEEEcCC-----CEEEEEEcCCCce---eEEeeccccce--EEEEEecCCCCeEEEEeC-----CCeEEEEeCCCCCc-
Q 021121 121 SFITSSWD-----DTVKLWTVDRPTS---VRTFKEHAYCV--YNATWNPRHSDVFCSASG-----DCTLRIWDVREMGS- 184 (317)
Q Consensus 121 ~l~~~~~d-----g~v~iwd~~~~~~---~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~- 184 (317)
+++.|+.+ ..+..+|+.+.+- ...+..-..+. .+++.. ++.+.+.|+. ...+..||+.+.+=
T Consensus 75 lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~ 152 (323)
T TIGR03548 75 IYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQEWF 152 (323)
T ss_pred EEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence 66666654 3577777766543 12221111111 122222 2566667664 24588889876531
Q ss_pred -eeeeccCccceEEEEecCCCCcEEEEEecCC----cEEEEEccCCC
Q 021121 185 -TMIIPAHEFEILACDWNKYDDCLIASASVDK----SIKIWDVRNYR 226 (317)
Q Consensus 185 -~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~----~i~v~d~~~~~ 226 (317)
+..+.... .....+..- ++++++.|+.++ .+.+||.++.+
T Consensus 153 ~~~~~p~~~-r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 153 ELPDFPGEP-RVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred ECCCCCCCC-CCcceEEEE-CCEEEEEcCCCCccccceEEEecCCCe
Confidence 11121111 111111222 667888887654 35688887643
No 453
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.64 E-value=2.6 Score=40.48 Aligned_cols=157 Identities=11% Similarity=0.168 Sum_probs=91.8
Q ss_pred CCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEE--------ecCCCCeEEEEeCCCeEEE
Q 021121 105 HTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATW--------NPRHSDVFCSASGDCTLRI 176 (317)
Q Consensus 105 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~l~~~~~dg~i~i 176 (317)
|...-..+-+-|.=+ -+-.+-|+.+.+|+.+++.....+.+....|..+.. .|.-..+|+.++ --.|.+
T Consensus 77 ~~~~~~~mGiFpeI~--RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~i 153 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIG--RAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVI 153 (1311)
T ss_pred Ccceeeeeccchhhc--ceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEE
Confidence 333334444555433 133345789999999998777777766666666643 232123333333 334555
Q ss_pred EeCCC----CCc-----eeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEcc--CC---------Cc---------
Q 021121 177 WDVRE----MGS-----TMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR--NY---------RV--------- 227 (317)
Q Consensus 177 ~d~~~----~~~-----~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~--~~---------~~--------- 227 (317)
+-+.- +.. ..++......|+++.... +|+.+++|- || .+|.+. .. +.
T Consensus 154 lgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~-nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~ 229 (1311)
T KOG1900|consen 154 LGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTE-NGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSS 229 (1311)
T ss_pred EEEEeccccCcccccccceeeecCCceEEEEEecc-CCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHH
Confidence 43321 111 122233456688888666 888877765 55 444432 10 00
Q ss_pred ---cEEEEe-cCCCceeEEEecCCCCeeEEeeecCCeEEEEecccc
Q 021121 228 ---PIAVLN-GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE 269 (317)
Q Consensus 228 ---~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~ 269 (317)
.+-.+. .+..+|..+....... ++.+-+..|+|.+||+...
T Consensus 230 lvPs~~~~~~~~~dpI~qi~ID~SR~-IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 230 LVPSLLSVPGSSKDPIRQITIDNSRN-ILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred hhhhhhcCCCCCCCcceeeEeccccc-eeeeeccCceEEEEEccCC
Confidence 011122 4567999999987665 8999999999999999873
No 454
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.60 E-value=3.8 Score=38.06 Aligned_cols=150 Identities=12% Similarity=0.043 Sum_probs=84.0
Q ss_pred EEEEEcCCCEEEEEEcCCCceeEEeeccccceE-------------EEEEecC-CCCeEEEEeC----------CCeEEE
Q 021121 121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVY-------------NATWNPR-HSDVFCSASG----------DCTLRI 176 (317)
Q Consensus 121 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-------------~~~~~~~-~~~~l~~~~~----------dg~i~i 176 (317)
.++.++.|+.+.-.|.++|+.+..+.. .+.+. .+.-.|- .+..+++|+. +|.|+-
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 688888999999999999998876642 11110 0111110 0345556642 688999
Q ss_pred EeCCCCCceeeeccC---------ccc--------e-EEEEecCCCCcEEEEEe------------------cCCcEEEE
Q 021121 177 WDVREMGSTMIIPAH---------EFE--------I-LACDWNKYDDCLIASAS------------------VDKSIKIW 220 (317)
Q Consensus 177 ~d~~~~~~~~~~~~~---------~~~--------v-~~i~~~~~~~~~l~~~~------------------~d~~i~v~ 220 (317)
+|.++++.+-.+..- ... + ...++++ ...++..+. ..+.|.-.
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~-~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvAL 419 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDE-KLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVAL 419 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcC-CCCeEEEeCCCccccccCCccccCcccccceEEEE
Confidence 999999887665311 000 0 2334455 333333322 12346666
Q ss_pred EccCCCccEEEEecCC--------CceeEEEecC-CCC--eeEEeeecCCeEEEEecccccce
Q 021121 221 DVRNYRVPIAVLNGHG--------YAVRKVKFSP-HRR--NLLASCSYDMTVCLWDFMVEDAL 272 (317)
Q Consensus 221 d~~~~~~~~~~~~~~~--------~~v~~~~~~~-~~~--~~l~~~~~d~~i~vwd~~~~~~~ 272 (317)
|.++++..-+....|. ....-+.+.. +++ ..++.++.+|.+.++|.++++.+
T Consensus 420 D~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 420 DATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred eCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 7777664222222121 0111122222 442 26888999999999999998743
No 455
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=94.56 E-value=0.44 Score=35.15 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=26.3
Q ss_pred cceEEEEEecCC-----CCEEEEEcCCCEEEEEEcCC
Q 021121 107 REVHSADYNPTR-----RDSFITSSWDDTVKLWTVDR 138 (317)
Q Consensus 107 ~~v~~~~~~~~~-----~~~l~~~~~dg~v~iwd~~~ 138 (317)
..+..++|+|.| +.+|++.+.+|.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 488999999954 34788999999999998654
No 456
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=94.27 E-value=2.3 Score=34.11 Aligned_cols=116 Identities=11% Similarity=0.164 Sum_probs=66.5
Q ss_pred CEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEe------CCCeEEEEeCCCCCceeeecc-----CccceEE
Q 021121 129 DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSAS------GDCTLRIWDVREMGSTMIIPA-----HEFEILA 197 (317)
Q Consensus 129 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~-----~~~~v~~ 197 (317)
..|++||..+.+-..--..-.+.|+.+.|..+ .++++.|. ....+..||+.+..- ..+.. ...++..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~-~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASN-NQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecC-CEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEE
Confidence 46999998876544444456788999999855 66776664 456788899876532 22222 2367788
Q ss_pred EEecCCCCc-EEEEEe-cC--CcEEEEEccCCCccEEEEecCCCceeEEEecC
Q 021121 198 CDWNKYDDC-LIASAS-VD--KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSP 246 (317)
Q Consensus 198 i~~~~~~~~-~l~~~~-~d--~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~ 246 (317)
+.+...+.. +.+.|. .+ ..|..||=.+....-.........|..+.+-|
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence 877543443 444443 22 34677765443321111122234555555443
No 457
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.27 E-value=0.29 Score=41.09 Aligned_cols=166 Identities=14% Similarity=0.064 Sum_probs=95.8
Q ss_pred CCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCcee-EEeecc-c----cceE-EEEEecCCCCeEEEEe
Q 021121 97 NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSV-RTFKEH-A----YCVY-NATWNPRHSDVFCSAS 169 (317)
Q Consensus 97 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~-~----~~v~-~~~~~~~~~~~l~~~~ 169 (317)
+.+..+..-.+.+..+-..|+++ .+..-+. .++.++++.+.... +++... . ..|+ .+.... ++.-+.++.
T Consensus 211 e~i~~L~~~~~~v~qllL~Pdg~-~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~ 287 (733)
T COG4590 211 EIIRLLSVPFSDVSQLLLTPDGK-TLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVH 287 (733)
T ss_pred hhhhhcCCCccchHhhEECCCCC-EEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEc
Confidence 33344555567788888999998 5555544 68888888764321 111110 1 1122 111112 366677888
Q ss_pred CCCeEEEE-eCCCCCc-----eeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEE
Q 021121 170 GDCTLRIW-DVREMGS-----TMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVK 243 (317)
Q Consensus 170 ~dg~i~i~-d~~~~~~-----~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~ 243 (317)
.||.|.-| |.+.... ++.++-...++..+.-.. +.+-+++-...|++.++.....+. +.... --..+.-++
T Consensus 288 ~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~-lL~~~-~~~~~~~~~ 364 (733)
T COG4590 288 EDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKL-LLFER-AYQAPQLVA 364 (733)
T ss_pred CCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcc-eehhh-hhcCcceee
Confidence 99988776 5554322 112222223343333333 556677778888888887655442 22222 223567799
Q ss_pred ecCCCCeeEEeeecCCeEEEEeccccc
Q 021121 244 FSPHRRNLLASCSYDMTVCLWDFMVED 270 (317)
Q Consensus 244 ~~~~~~~~l~~~~~d~~i~vwd~~~~~ 270 (317)
+||.+.+ +++- ..|.++++.+++..
T Consensus 365 ~Sp~~~~-Ll~e-~~gki~~~~l~Nr~ 389 (733)
T COG4590 365 MSPNQAY-LLSE-DQGKIRLAQLENRN 389 (733)
T ss_pred eCcccch-heee-cCCceEEEEecCCC
Confidence 9999985 5543 46789999887754
No 458
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=94.17 E-value=3.1 Score=35.20 Aligned_cols=10 Identities=10% Similarity=0.076 Sum_probs=7.5
Q ss_pred eEEEEeCCCC
Q 021121 173 TLRIWDVREM 182 (317)
Q Consensus 173 ~i~i~d~~~~ 182 (317)
.+.+||..+.
T Consensus 190 ~v~~YD~~t~ 199 (376)
T PRK14131 190 EVLSYDPSTN 199 (376)
T ss_pred eEEEEECCCC
Confidence 5888898764
No 459
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=94.00 E-value=0.36 Score=25.22 Aligned_cols=30 Identities=7% Similarity=0.082 Sum_probs=22.2
Q ss_pred CCCceeEEEecCCCCeeEEeeecC--CeEEEE
Q 021121 235 HGYAVRKVKFSPHRRNLLASCSYD--MTVCLW 264 (317)
Q Consensus 235 ~~~~v~~~~~~~~~~~~l~~~~~d--~~i~vw 264 (317)
....-....|+|+|+.++.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445667889999999877777777 776666
No 460
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.93 E-value=0.78 Score=35.31 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=50.3
Q ss_pred CCceecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCccee-----eeee------cCCCCeeEEEec
Q 021121 1 MPVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTE-----LVAF------DTADGVYDLAWS 69 (317)
Q Consensus 1 ~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~-----~~~~------~~~~~v~~~~~~ 69 (317)
||.+.-+.++..+..+. ..+++.+. +|.+++||+......+.. +... .....|..+..+
T Consensus 6 ~P~i~Lgs~~~~l~~~~---~~Ll~iT~-------~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt 75 (219)
T PF07569_consen 6 LPPIVLGSPVSFLECNG---SYLLAITS-------SGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLT 75 (219)
T ss_pred cCcEecCCceEEEEeCC---CEEEEEeC-------CCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEc
Confidence 57777777777666443 44555554 899999999876533322 1100 244568888888
Q ss_pred CCCCCeEEEEEcCCeEEEEEeCC
Q 021121 70 ESHDSLLIAAVADGSVKIYDTAL 92 (317)
Q Consensus 70 ~~~~~~l~~~~~dg~i~v~~~~~ 92 (317)
.+|. -+++- .+|....|+.+-
T Consensus 76 ~~G~-PiV~l-sng~~y~y~~~L 96 (219)
T PF07569_consen 76 SNGV-PIVTL-SNGDSYSYSPDL 96 (219)
T ss_pred CCCC-EEEEE-eCCCEEEecccc
Confidence 7773 44443 457788888553
No 461
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.82 E-value=1.1 Score=38.46 Aligned_cols=75 Identities=13% Similarity=0.025 Sum_probs=48.5
Q ss_pred ceeEEEecCCCCeeEEeeecCCeEEEEe---------ccccccee-eee---------ecccceeEeEEEEecc--CCeE
Q 021121 238 AVRKVKFSPHRRNLLASCSYDMTVCLWD---------FMVEDALV-GRY---------DHHTEFAVGVDMSVLV--EGLL 296 (317)
Q Consensus 238 ~v~~~~~~~~~~~~l~~~~~d~~i~vwd---------~~~~~~~~-~~~---------~~~~~~v~~~~~~~~~--~~~l 296 (317)
.|..+..++.|. .++-.+.+|.+.++= ++.++..+ .+. ....-.+..++|+|+. +..|
T Consensus 105 eV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 567888899998 566667788655532 11222111 110 1122346788999985 5678
Q ss_pred EEeecCCcEEEEecCCC
Q 021121 297 ASTGWDELVYVWQQGMD 313 (317)
Q Consensus 297 ~s~~~dg~i~~w~~~~~ 313 (317)
..-..|..+|+|++...
T Consensus 184 ~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEEecCcEEEEEecCCc
Confidence 88888999999999765
No 462
>PRK13684 Ycf48-like protein; Provisional
Probab=93.70 E-value=3.5 Score=34.20 Aligned_cols=150 Identities=8% Similarity=-0.001 Sum_probs=82.1
Q ss_pred CcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEe-eccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc
Q 021121 106 TREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTF-KEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS 184 (317)
Q Consensus 106 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 184 (317)
...+.++.+.|++. ++++ +..|.+..-.-..++.-... ......++++.+.++ +..+++ +..|.+++=....+..
T Consensus 172 ~g~~~~i~~~~~g~-~v~~-g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~-g~~~~v-g~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGK-YVAV-SSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPD-GNLWML-ARGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCe-EEEE-eCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCC-CCEEEE-ecCCEEEEccCCCCCc
Confidence 45788999999875 5544 44666553211222222222 233467899999987 666655 4567665423333332
Q ss_pred eeeecc----CccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe---cCCCceeEEEecCCCCeeEEeeec
Q 021121 185 TMIIPA----HEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN---GHGYAVRKVKFSPHRRNLLASCSY 257 (317)
Q Consensus 185 ~~~~~~----~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~ 257 (317)
-..... ....+..+.+.| ++..++++ .+|.+. .....++. -.... .-....+.+.|..+++ .++ .+.
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~-~~~~~~~G-~~G~v~-~S~d~G~t-W~~~~~~~~~~~~~~~~~~~~~~~-~~~-~G~ 321 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRT-PGEIWAGG-GNGTLL-VSKDGGKT-WEKDPVGEEVPSNFYKIVFLDPEK-GFV-LGQ 321 (334)
T ss_pred cccccCCccccccceeeEEEcC-CCCEEEEc-CCCeEE-EeCCCCCC-CeECCcCCCCCcceEEEEEeCCCc-eEE-ECC
Confidence 221111 223477888988 66665554 566554 33333332 22221 1223577888877666 455 456
Q ss_pred CCeEEEEe
Q 021121 258 DMTVCLWD 265 (317)
Q Consensus 258 d~~i~vwd 265 (317)
.|.|--|+
T Consensus 322 ~G~il~~~ 329 (334)
T PRK13684 322 RGVLLRYV 329 (334)
T ss_pred CceEEEec
Confidence 78877665
No 463
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.69 E-value=0.59 Score=35.95 Aligned_cols=66 Identities=6% Similarity=0.134 Sum_probs=45.8
Q ss_pred ecCCCCeeEEeeecCCeEEEEecccccceeee------ee-------cccceeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121 244 FSPHRRNLLASCSYDMTVCLWDFMVEDALVGR------YD-------HHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ 310 (317)
Q Consensus 244 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~------~~-------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~ 310 (317)
+...+. +|++-..+|.+++||+.+.+..... +. .....|..+.++.+ |.-+++-+ +|..+.|+.
T Consensus 18 l~~~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~-G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSN-GVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCC-CCEEEEEe-CCCEEEecc
Confidence 334566 5888889999999999987733222 22 34567888888866 66666654 577888887
Q ss_pred CC
Q 021121 311 GM 312 (317)
Q Consensus 311 ~~ 312 (317)
+.
T Consensus 95 ~L 96 (219)
T PF07569_consen 95 DL 96 (219)
T ss_pred cc
Confidence 64
No 464
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.56 E-value=3.1 Score=33.18 Aligned_cols=161 Identities=17% Similarity=0.122 Sum_probs=101.4
Q ss_pred eeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEE
Q 021121 54 LVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKL 133 (317)
Q Consensus 54 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i 133 (317)
+......+-+..+.++.+ +...+..+.-++|.|+.++.....+..+.. .+--.++..+ |+ +...+..|.-+.+
T Consensus 80 ~~~i~~~~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~vs--Gn-~aYVadlddgfLi 152 (370)
T COG5276 80 LSVINARDLFADVRVSEE---YVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYVS--GN-YAYVADLDDGFLI 152 (370)
T ss_pred EEEEehhhhhheeEeccc---EEEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEEec--CC-EEEEeeccCcEEE
Confidence 333455666788888853 555566666699999998865555555443 2444455444 55 7777776666777
Q ss_pred EEcCCCc---eeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec--cCccceEEEEecCCCCcEE
Q 021121 134 WTVDRPT---SVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP--AHEFEILACDWNKYDDCLI 208 (317)
Q Consensus 134 wd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l 208 (317)
.|+.+.+ ....+......-..++.+ +++...+..|+-+.+-|+.+......+. .....+.++..++ +..++
T Consensus 153 vdvsdpssP~lagrya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsd-nr~y~ 228 (370)
T COG5276 153 VDVSDPSSPQLAGRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSD-NRAYL 228 (370)
T ss_pred EECCCCCCceeeeeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecC-CeeEE
Confidence 8887653 333444444445677776 6778788899999999998764433322 1223577787776 55455
Q ss_pred EEEecCCcEEEEEccCCCc
Q 021121 209 ASASVDKSIKIWDVRNYRV 227 (317)
Q Consensus 209 ~~~~~d~~i~v~d~~~~~~ 227 (317)
+.. +--+.+-|....+.
T Consensus 229 vvy--~egvlivd~s~~ss 245 (370)
T COG5276 229 VVY--DEGVLIVDVSGPSS 245 (370)
T ss_pred EEc--ccceEEEecCCCCC
Confidence 443 33467777776654
No 465
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.41 E-value=0.46 Score=25.16 Aligned_cols=41 Identities=15% Similarity=0.168 Sum_probs=27.6
Q ss_pred cCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEE
Q 021121 116 PTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATW 157 (317)
Q Consensus 116 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~ 157 (317)
|+++.++++...++.|.++|..+++.+..+... .....+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 456645555667899999999988887777652 33444443
No 466
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.29 E-value=1.2 Score=32.87 Aligned_cols=32 Identities=13% Similarity=0.470 Sum_probs=25.7
Q ss_pred cceEEEEecCC-----CCcEEEEEecCCcEEEEEccC
Q 021121 193 FEILACDWNKY-----DDCLIASASVDKSIKIWDVRN 224 (317)
Q Consensus 193 ~~v~~i~~~~~-----~~~~l~~~~~d~~i~v~d~~~ 224 (317)
..+.+++|||. .+.+|++.+.++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 37899999993 245888899999999998654
No 467
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=93.00 E-value=4.7 Score=33.60 Aligned_cols=41 Identities=10% Similarity=-0.163 Sum_probs=19.3
Q ss_pred CeEEEEeCCCCC--ceeeeccCccceEEEEecCCCCcEEEEEecC
Q 021121 172 CTLRIWDVREMG--STMIIPAHEFEILACDWNKYDDCLIASASVD 214 (317)
Q Consensus 172 g~i~i~d~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d 214 (317)
..+..||..+.+ .+..+......-.+++.. ++++++.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~--~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHK--GNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEE--CCEEEEEeeee
Confidence 468888887642 111121101111222222 66777777753
No 468
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.87 E-value=4.8 Score=38.71 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=28.5
Q ss_pred eeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeC
Q 021121 55 VAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTA 91 (317)
Q Consensus 55 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~ 91 (317)
...+.+.....++|.|.- .+++.|..+|.|++|-..
T Consensus 30 ~~~G~~~~~~~~afD~~q-~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 30 NRHGFPSTPSALAFDPTQ-GLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred eecCCCCCCcceeecccc-ceEEEEEecccEEEeccc
Confidence 334555567788999985 799999999999999754
No 469
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=92.73 E-value=0.94 Score=40.46 Aligned_cols=73 Identities=16% Similarity=0.278 Sum_probs=43.1
Q ss_pred CCeEEEEEcCCeEEEEEeCCCC-CCCCce-----------ee-----------ccCCcceEEEEEec---CCCCEEEEEc
Q 021121 73 DSLLIAAVADGSVKIYDTALPP-TANPIR-----------SL-----------HEHTREVHSADYNP---TRRDSFITSS 126 (317)
Q Consensus 73 ~~~l~~~~~dg~i~v~~~~~~~-~~~~~~-----------~~-----------~~~~~~v~~~~~~~---~~~~~l~~~~ 126 (317)
+..++.+..||.+......... ...... .+ ......+..++... ++..++++.+
T Consensus 158 ~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~ 237 (547)
T PF11715_consen 158 EANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLS 237 (547)
T ss_dssp SSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEE
T ss_pred CCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEe
Confidence 3578888899998888876511 000000 00 01123445555555 2344999999
Q ss_pred CCCEEEEEEcCCCceeEEe
Q 021121 127 WDDTVKLWTVDRPTSVRTF 145 (317)
Q Consensus 127 ~dg~v~iwd~~~~~~~~~~ 145 (317)
.|+.+++||+.+++++...
T Consensus 238 ~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 238 RDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp TTSEEEEEETTTTCEEEEE
T ss_pred CCCeEEEEECCCCeEEEEe
Confidence 9999999999999986654
No 470
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=92.55 E-value=9.7 Score=36.10 Aligned_cols=173 Identities=6% Similarity=0.058 Sum_probs=93.2
Q ss_pred EEEEEEcCCCceeEEeecc----ccceEEEEEecCCCC-eEEEEe-----------CCCeEEEEeCCC-CCceeeecc--
Q 021121 130 TVKLWTVDRPTSVRTFKEH----AYCVYNATWNPRHSD-VFCSAS-----------GDCTLRIWDVRE-MGSTMIIPA-- 190 (317)
Q Consensus 130 ~v~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~-~l~~~~-----------~dg~i~i~d~~~-~~~~~~~~~-- 190 (317)
.|++.|..+++.+..+... ...+..+.|+..+.. +++++. .+|.++.|++-. ++.+..+..
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 5888888887766555422 224566667665333 333332 234566676543 332222221
Q ss_pred CccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEE--EecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121 191 HEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAV--LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV 268 (317)
Q Consensus 191 ~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~ 268 (317)
-..++ .+..|..+ ++++| ....+++||+.+.+. ++. ++.-...|+.+++. +. .++.|...-.+.++-.+.
T Consensus 934 ~~~~v--~Ai~~f~~-~~Lag-vG~~l~~YdlG~K~l-LRk~e~k~~p~~Is~iqt~--~~-RI~VgD~qeSV~~~~y~~ 1005 (1205)
T KOG1898|consen 934 IPGPV--GAICPFQG-RVLAG-VGRFLRLYDLGKKKL-LRKCELKFIPNRISSIQTY--GA-RIVVGDIQESVHFVRYRR 1005 (1205)
T ss_pred CCccc--eEEeccCC-EEEEe-cccEEEEeeCChHHH-HhhhhhccCceEEEEEeec--ce-EEEEeeccceEEEEEEec
Confidence 22334 34556344 44443 457899999987543 322 22234567777774 33 366666555566655544
Q ss_pred ccceeeeeec--ccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121 269 EDALVGRYDH--HTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 269 ~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
....+..+.. -...|+++.+-. ...++.+..=|.+.+-++..
T Consensus 1006 ~~n~l~~fadD~~pR~Vt~~~~lD--~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1006 EDNQLIVFADDPVPRHVTALELLD--YDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred CCCeEEEEeCCCccceeeEEEEec--CCceeeccccCcEEEEECCC
Confidence 3333333322 233466665543 56788777777776666543
No 471
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=92.36 E-value=5.5 Score=32.83 Aligned_cols=104 Identities=9% Similarity=0.038 Sum_probs=51.1
Q ss_pred CCeEEEEeCC-----CeEEEEeCCCCCc---eeeeccCccce--EEEEecCCCCcEEEEEecC-----CcEEEEEccCCC
Q 021121 162 SDVFCSASGD-----CTLRIWDVREMGS---TMIIPAHEFEI--LACDWNKYDDCLIASASVD-----KSIKIWDVRNYR 226 (317)
Q Consensus 162 ~~~l~~~~~d-----g~i~i~d~~~~~~---~~~~~~~~~~v--~~i~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~ 226 (317)
+.+++.|+.+ ..+..||+.+.+- ...+.....+. .+++.. ++.+++.|+.. ..+..||+.+.+
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 5666777654 3567777766542 11221111111 122222 56777777642 358888887643
Q ss_pred ccEEEEec--CCCceeEEEecCCCCeeEEeeecCC----eEEEEeccccc
Q 021121 227 VPIAVLNG--HGYAVRKVKFSPHRRNLLASCSYDM----TVCLWDFMVED 270 (317)
Q Consensus 227 ~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~----~i~vwd~~~~~ 270 (317)
-..+.. ........+...+++ +.+.|+.++ .+.+||..+.+
T Consensus 151 --W~~~~~~p~~~r~~~~~~~~~~~-iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 --WFELPDFPGEPRVQPVCVKLQNE-LYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred --eeECCCCCCCCCCcceEEEECCE-EEEEcCCCCccccceEEEecCCCe
Confidence 222211 111111122223454 677777653 25678887654
No 472
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.36 E-value=1.1 Score=37.83 Aligned_cols=166 Identities=14% Similarity=0.128 Sum_probs=91.5
Q ss_pred ceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCC---CCee-EEEecCCCCCeEEEEEcCCe
Q 021121 9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTA---DGVY-DLAWSESHDSLLIAAVADGS 84 (317)
Q Consensus 9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~---~~v~-~~~~~~~~~~~l~~~~~dg~ 84 (317)
.+..+-..| +++.+..-. ...+.++++.+..-..+++...... ..|+ .+..- .|..-++++..||.
T Consensus 222 ~v~qllL~P--dg~~LYv~~-------g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL-~Gg~SLLv~~~dG~ 291 (733)
T COG4590 222 DVSQLLLTP--DGKTLYVRT-------GSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLL-SGGFSLLVVHEDGL 291 (733)
T ss_pred chHhhEECC--CCCEEEEec-------CCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHH-hCceeEEEEcCCCc
Confidence 455566777 455555443 3488899988765333322211111 1222 11111 24467888889999
Q ss_pred EEEE-EeCCCCCC--CCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCC
Q 021121 85 VKIY-DTALPPTA--NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRH 161 (317)
Q Consensus 85 i~v~-~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (317)
|.-| |...+... ..++.++-...++..+.-..+.+ -+++-+..|++..+.-...+.+..-. --..+.-++++|.
T Consensus 292 vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rk-gF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~- 368 (733)
T COG4590 292 VSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRK-GFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPN- 368 (733)
T ss_pred eeeeeeeecCCCCcceeeeccccCcccceeeccccccc-eEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcc-
Confidence 9887 44433221 11222222233444333222233 67788888998887654443332222 2235777899998
Q ss_pred CCeEEEEeCCCeEEEEeCCCCCceeee
Q 021121 162 SDVFCSASGDCTLRIWDVREMGSTMII 188 (317)
Q Consensus 162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~ 188 (317)
.+.+++ -+.|.++++.+++..+..++
T Consensus 369 ~~~Ll~-e~~gki~~~~l~Nr~Peisw 394 (733)
T COG4590 369 QAYLLS-EDQGKIRLAQLENRNPEISW 394 (733)
T ss_pred cchhee-ecCCceEEEEecCCCCCccH
Confidence 666644 45788999998876554443
No 473
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.90 E-value=5.3 Score=31.64 Aligned_cols=201 Identities=12% Similarity=0.071 Sum_probs=115.8
Q ss_pred CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC
Q 021121 59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR 138 (317)
Q Consensus 59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 138 (317)
....-..++-.||| ..-+++...+.|--.|-.++ +....--+....-..|..-||+. .-++-+.. .|.-.|.++
T Consensus 60 ~G~ap~dvapapdG-~VWft~qg~gaiGhLdP~tG---ev~~ypLg~Ga~Phgiv~gpdg~-~Witd~~~-aI~R~dpkt 133 (353)
T COG4257 60 NGSAPFDVAPAPDG-AVWFTAQGTGAIGHLDPATG---EVETYPLGSGASPHGIVVGPDGS-AWITDTGL-AIGRLDPKT 133 (353)
T ss_pred CCCCccccccCCCC-ceEEecCccccceecCCCCC---ceEEEecCCCCCCceEEECCCCC-eeEecCcc-eeEEecCcc
Confidence 33455677888887 47777777777777776655 33322223344555667778877 33332222 555556655
Q ss_pred CceeE---EeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc-CccceEEEEecCCCCcEEEEEecC
Q 021121 139 PTSVR---TFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA-HEFEILACDWNKYDDCLIASASVD 214 (317)
Q Consensus 139 ~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~l~~~~~d 214 (317)
.+..+ ..+..........|.+. +++-+++.. |.---.|..+ ..+..+.. .....+.|+..| ++...++.-.+
T Consensus 134 ~evt~f~lp~~~a~~nlet~vfD~~-G~lWFt~q~-G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atp-dGsvwyaslag 209 (353)
T COG4257 134 LEVTRFPLPLEHADANLETAVFDPW-GNLWFTGQI-GAYGRLDPAR-NVISVFPAPQGGGPYGICATP-DGSVWYASLAG 209 (353)
T ss_pred cceEEeecccccCCCcccceeeCCC-ccEEEeecc-ccceecCccc-CceeeeccCCCCCCcceEECC-CCcEEEEeccc
Confidence 43322 11223456788889988 777777653 2211122221 12222322 233457788889 88888887778
Q ss_pred CcEEEEEccCCCccEEEE-ecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121 215 KSIKIWDVRNYRVPIAVL-NGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED 270 (317)
Q Consensus 215 ~~i~v~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~ 270 (317)
..|-..|.......+... ......-+.+--+|.++ +-++-...+.+..+|.....
T Consensus 210 naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 210 NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred cceEEcccccCCcceecCCCcccccccccccCccCc-EEEeccCCceeeEeCccccc
Confidence 888888877653211111 12123445666677777 56666667778888866544
No 474
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=91.48 E-value=9.3 Score=33.63 Aligned_cols=274 Identities=9% Similarity=-0.059 Sum_probs=126.0
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
...+|.++-+.- .+.+-+++. + -+..||....+ ...+.......+|..+.-..++ .|.+|+.+| |
T Consensus 163 ~d~~V~aLv~D~--~g~lWvgT~-------d-GL~~fd~~~gk--alql~s~~~dk~I~al~~d~qg--~LWVGTdqG-v 227 (671)
T COG3292 163 KDTPVVALVFDA--NGRLWVGTP-------D-GLSYFDAGRGK--ALQLASPPLDKAINALIADVQG--RLWVGTDQG-V 227 (671)
T ss_pred cCccceeeeeec--cCcEEEecC-------C-cceEEccccce--EEEcCCCcchhhHHHHHHHhcC--cEEEEeccc-e
Confidence 345677787877 677777765 3 34555554433 1111111233567777766665 688898888 6
Q ss_pred EEEEeCCCCCCCCcee-eccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeec--cccceEEEEEecCCC
Q 021121 86 KIYDTALPPTANPIRS-LHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKE--HAYCVYNATWNPRHS 162 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~ 162 (317)
.+.+.+.. ....- ..-..+.|..+.-..+| .+-.|+..|..+.--.+.+-.....+. .-+.|.++....+ +
T Consensus 228 ~~~e~~G~---~~sn~~~~lp~~~I~ll~qD~qG--~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~d-G 301 (671)
T COG3292 228 YLQEAEGW---RASNWGPMLPSGNILLLVQDAQG--ELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTD-G 301 (671)
T ss_pred EEEchhhc---cccccCCCCcchheeeeecccCC--CEEEeecccceeEecCCCCccccccccCCccccccceeeccC-C
Confidence 77665431 11110 11123444444433344 466666666544322222211111111 2234555555544 4
Q ss_pred CeEEEEeCCCeEEEEeCCCCCceeeeccCccc-eEEEEecCC-CCcEEEEEecCCcEEEEEccCCCccEEEEecCCCcee
Q 021121 163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFE-ILACDWNKY-DDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVR 240 (317)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~i~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~ 240 (317)
+ +-+++.+|.+++-+-. -.....+...++. +..++..|. .+..+--...-|.+.+-+-.++.............|+
T Consensus 302 s-LWv~t~~giv~~~~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit 379 (671)
T COG3292 302 S-LWVGTYGGIVRYLTAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNIT 379 (671)
T ss_pred C-EeeeccCceEEEecch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccc
Confidence 4 4467777766654432 1111111111111 111111110 0111111111122222222232221222223345677
Q ss_pred EEEecCCCCeeEEeeecCCeEEEEecccccceeeeee-cccceeEeEEEEeccCCeEEEeecCCcEE
Q 021121 241 KVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYD-HHTEFAVGVDMSVLVEGLLASTGWDELVY 306 (317)
Q Consensus 241 ~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~ 306 (317)
.+++..+++ +-.|+..+-+..|+..+......... ...+.|..|.=.|+ ++ |..|+.+|.++
T Consensus 380 ~~~~d~~g~--lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~d-ns-LWIGTs~Glvk 442 (671)
T COG3292 380 TTLEDSRGR--LWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPD-NS-LWIGTSGGLVK 442 (671)
T ss_pred hhhhccCCc--EEEEecccchhhhccCCcccccccccCCcccceeeeeecCC-CC-EEEeccCCeEe
Confidence 777777665 55566664566677666222222222 23456777777776 34 88888888654
No 475
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=91.41 E-value=6.4 Score=31.63 Aligned_cols=116 Identities=10% Similarity=0.033 Sum_probs=64.8
Q ss_pred CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEc------CCCEEEEEEcCCCceeEEeec-----ccc
Q 021121 82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSS------WDDTVKLWTVDRPTSVRTFKE-----HAY 150 (317)
Q Consensus 82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~v~iwd~~~~~~~~~~~~-----~~~ 150 (317)
-..|++||.... ++... ..+-.+.|+.+.|..+.. ++++|. ....+..||+.+..- ..+.. -.+
T Consensus 15 C~~lC~yd~~~~-qW~~~--g~~i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipg 89 (281)
T PF12768_consen 15 CPGLCLYDTDNS-QWSSP--GNGISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPG 89 (281)
T ss_pred CCEEEEEECCCC-EeecC--CCCceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCC
Confidence 346999998754 22211 123567899999985554 666663 456788999886543 23332 247
Q ss_pred ceEEEEEecCCCC-eEEEEe-C--CCeEEEEeCCCCCceee-eccCccceEEEEecC
Q 021121 151 CVYNATWNPRHSD-VFCSAS-G--DCTLRIWDVREMGSTMI-IPAHEFEILACDWNK 202 (317)
Q Consensus 151 ~v~~~~~~~~~~~-~l~~~~-~--dg~i~i~d~~~~~~~~~-~~~~~~~v~~i~~~~ 202 (317)
++..+.+...+.. +.+.|. . +..|..||-.+-..+.. .......|..+.+-|
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred cEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence 7888887654444 443433 2 33466676544333322 122234455554443
No 476
>PLN02153 epithiospecifier protein
Probab=91.27 E-value=7.7 Score=32.28 Aligned_cols=62 Identities=6% Similarity=0.140 Sum_probs=32.3
Q ss_pred CCeEEEEeCC-----CeEEEEeCCCCCc--eeeec----cCccceEEEEecCCCCcEEEEEecC-----------CcEEE
Q 021121 162 SDVFCSASGD-----CTLRIWDVREMGS--TMIIP----AHEFEILACDWNKYDDCLIASASVD-----------KSIKI 219 (317)
Q Consensus 162 ~~~l~~~~~d-----g~i~i~d~~~~~~--~~~~~----~~~~~v~~i~~~~~~~~~l~~~~~d-----------~~i~v 219 (317)
+.+++.|+.+ ..+.+||+++.+= +..+. .....-.+++.. ++++++.|+.+ ..+.+
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEEE
Confidence 5677777653 3477888876421 11110 011111223332 56677777754 24778
Q ss_pred EEccCC
Q 021121 220 WDVRNY 225 (317)
Q Consensus 220 ~d~~~~ 225 (317)
||.++.
T Consensus 164 yd~~~~ 169 (341)
T PLN02153 164 YNIADG 169 (341)
T ss_pred EECCCC
Confidence 888764
No 477
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.15 E-value=1.1 Score=23.66 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=22.7
Q ss_pred cCCCCeEEEEeCCCeEEEEeCCCCCceeeecc
Q 021121 159 PRHSDVFCSASGDCTLRIWDVREMGSTMIIPA 190 (317)
Q Consensus 159 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 190 (317)
|++..++++...++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 45344555566788999999988877776664
No 478
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.12 E-value=8.8 Score=32.69 Aligned_cols=146 Identities=10% Similarity=0.025 Sum_probs=76.7
Q ss_pred eEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc--eeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCc--
Q 021121 152 VYNATWNPRHSDVFCSASGDCTLRIWDVREMGS--TMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV-- 227 (317)
Q Consensus 152 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-- 227 (317)
...+..+++ +.+++.+.....++-||- +.. ...-......+.++.+.+ ++.+++++ .+|.+.. ....++.
T Consensus 241 f~~v~~~~d-G~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~~-S~d~G~~~~ 314 (398)
T PLN00033 241 FSTVNRSPD-GDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLYV-SKGTGLTEE 314 (398)
T ss_pred eeeEEEcCC-CCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceEEE-ecCCCCccc
Confidence 344455566 556555443333333442 221 111122345688899988 77777665 4565543 3222221
Q ss_pred --cEEEEec--CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeee--eecccceeEeEEEEeccCCeEEEeec
Q 021121 228 --PIAVLNG--HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGR--YDHHTEFAVGVDMSVLVEGLLASTGW 301 (317)
Q Consensus 228 --~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~ 301 (317)
....... ....+..+.|.+++. ++ .++..|.+.... ..++.-... ...-....+.+.|.++ +.....+.
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~~-~~-a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~--~~g~~~G~ 389 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKKE-AW-AAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDD--KKGFVLGN 389 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCCc-EE-EEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCC--CceEEEeC
Confidence 1222221 223588999998876 44 455678666543 333321111 1233456889998774 34555557
Q ss_pred CCcEEEE
Q 021121 302 DELVYVW 308 (317)
Q Consensus 302 dg~i~~w 308 (317)
+|.|.-|
T Consensus 390 ~G~il~~ 396 (398)
T PLN00033 390 DGVLLRY 396 (398)
T ss_pred CcEEEEe
Confidence 8877655
No 479
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.77 E-value=11 Score=32.98 Aligned_cols=77 Identities=16% Similarity=0.210 Sum_probs=50.9
Q ss_pred ceEEEEEecCCCCEEEEEcCCCEEEEEEc---------CCCceeEEee-----------ccccceEEEEEecCC--CCeE
Q 021121 108 EVHSADYNPTRRDSFITSSWDDTVKLWTV---------DRPTSVRTFK-----------EHAYCVYNATWNPRH--SDVF 165 (317)
Q Consensus 108 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~---------~~~~~~~~~~-----------~~~~~v~~~~~~~~~--~~~l 165 (317)
.|..+..++.|. .++-.+.+|.+.++-. +.++..-..+ ...-.+...+|+|+. ...+
T Consensus 105 eV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 567788899998 6777777887766542 2232211111 112246678899985 5677
Q ss_pred EEEeCCCeEEEEeCCCCCce
Q 021121 166 CSASGDCTLRIWDVREMGST 185 (317)
Q Consensus 166 ~~~~~dg~i~i~d~~~~~~~ 185 (317)
..-+.|..+++||+.....+
T Consensus 184 ~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEecCcEEEEEecCCcchh
Confidence 78889999999999865544
No 480
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.53 E-value=4.4 Score=28.19 Aligned_cols=117 Identities=14% Similarity=0.144 Sum_probs=67.9
Q ss_pred EEecCCCCeEEEEEecccccccCceEEEEecCCCCC----cceeeeeecCCCCeeEEEecC----CCCCeEEEEEcCCeE
Q 021121 14 KFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAP----ALTELVAFDTADGVYDLAWSE----SHDSLLIAAVADGSV 85 (317)
Q Consensus 14 ~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~dg~i 85 (317)
.|....+ .|++++. .|+|.|++...... ....+..+.....|++++-.+ ++...|+.|+. ..+
T Consensus 5 kfDG~~p-cL~~aT~-------~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~l 75 (136)
T PF14781_consen 5 KFDGVHP-CLACATT-------GGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSL 75 (136)
T ss_pred EeCCCce-eEEEEec-------CCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceE
Confidence 4555423 4455554 77999998764432 223455566778888887544 23346777765 569
Q ss_pred EEEEeCCCCCCCCceeeccCCcceEEEEEecCC--CCEEEEEcCCCEEEEEEcCCCceeE
Q 021121 86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTR--RDSFITSSWDDTVKLWTVDRPTSVR 143 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~v~iwd~~~~~~~~ 143 (317)
..||+... ..+. ++.-...|.++.+-.-+ ..-++..+.+..|.-||.+..+...
T Consensus 76 laYDV~~N---~d~F-yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 76 LAYDVENN---SDLF-YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred EEEEcccC---chhh-hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
Confidence 99999865 2221 22334667777663211 1134444446788888876554443
No 481
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=90.15 E-value=14 Score=33.49 Aligned_cols=202 Identities=12% Similarity=0.144 Sum_probs=98.6
Q ss_pred cCCCCeeEEEecCCC--CCeEEEEEcC-CeEEEEEeCCC----------CCCCCceeeccCCcceEEEEEecCCCCEEEE
Q 021121 58 DTADGVYDLAWSESH--DSLLIAAVAD-GSVKIYDTALP----------PTANPIRSLHEHTREVHSADYNPTRRDSFIT 124 (317)
Q Consensus 58 ~~~~~v~~~~~~~~~--~~~l~~~~~d-g~i~v~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 124 (317)
....-|.||...... ..+.++|-.+ +.-++-.+..+ ........+. -.+.|..+.|.+++. .+++
T Consensus 69 ~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~-~I~v 146 (670)
T PF10395_consen 69 SPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDGTVNSETTNEFELK-LDDKVVGIKFSSDGK-IIYV 146 (670)
T ss_pred CcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccccccCccccceEEEE-cccceEEEEEecCCC-EEEE
Confidence 345567777764321 2355555344 33454444432 0011111222 367899999998887 8889
Q ss_pred EcCCCEEEEEEcCCCceeE--Eeec-cc------cceEEEEEecCCCCeEEEEeC-C---CeEEEEeCC-CCCceeeec-
Q 021121 125 SSWDDTVKLWTVDRPTSVR--TFKE-HA------YCVYNATWNPRHSDVFCSASG-D---CTLRIWDVR-EMGSTMIIP- 189 (317)
Q Consensus 125 ~~~dg~v~iwd~~~~~~~~--~~~~-~~------~~v~~~~~~~~~~~~l~~~~~-d---g~i~i~d~~-~~~~~~~~~- 189 (317)
...+|.|.+||...+.... .+.. +. .-|..... .++..++++.+. + -..+++.+. .......+.
T Consensus 147 vl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~-~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s 225 (670)
T PF10395_consen 147 VLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFEL-ENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSS 225 (670)
T ss_pred EEcCCcEEEEeccccccccccccccccccceehhhhhccccc-ccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeeh
Confidence 9999999999993332111 1211 11 11222211 112344444433 2 246777771 112222221
Q ss_pred --cCccce--EEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec-----CC-CceeEEEecCCCCeeEEeeecCC
Q 021121 190 --AHEFEI--LACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG-----HG-YAVRKVKFSPHRRNLLASCSYDM 259 (317)
Q Consensus 190 --~~~~~v--~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-----~~-~~v~~~~~~~~~~~~l~~~~~d~ 259 (317)
.+.... ..+++. .|.+..- .+++|.+|++...+. ...+.- .. ..+.++.- |...++|++ .++
T Consensus 226 ~~~e~~~~~~s~f~Y~--~G~LY~l--~~~~i~~ysip~f~~-~~tI~l~~ii~~~~~~~vSl~~-~s~nRvLLs--~~n 297 (670)
T PF10395_consen 226 TILENFGLEDSKFCYQ--FGKLYQL--SKKTISSYSIPNFQI-QKTISLPSIIDKESDDLVSLKP-PSPNRVLLS--VNN 297 (670)
T ss_pred heeccCCcccceEEEe--CCEEEEE--eCCEEEEEEcCCceE-EEEEEechhhccccccceEeec-CCCCeEEEE--cCC
Confidence 111111 223333 5555444 577899999987642 222221 11 12333332 222225554 367
Q ss_pred eEEEEeccccc
Q 021121 260 TVCLWDFMVED 270 (317)
Q Consensus 260 ~i~vwd~~~~~ 270 (317)
.|.+.|+.-..
T Consensus 298 kIyLld~~~~s 308 (670)
T PF10395_consen 298 KIYLLDLKFES 308 (670)
T ss_pred EEEEEeehhhh
Confidence 89999986543
No 482
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=90.00 E-value=9 Score=30.95 Aligned_cols=222 Identities=10% Similarity=0.094 Sum_probs=118.2
Q ss_pred eeEEEecCCCCCeEEEEEcCCeEEEEEeCCCC---CCCC-ceeecc-----CCcceEEEEEecCCC-----------CEE
Q 021121 63 VYDLAWSESHDSLLIAAVADGSVKIYDTALPP---TANP-IRSLHE-----HTREVHSADYNPTRR-----------DSF 122 (317)
Q Consensus 63 v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~---~~~~-~~~~~~-----~~~~v~~~~~~~~~~-----------~~l 122 (317)
-..|+++|.+ .+-++....+...+||..... ...+ ...+.. .....+.+.|+.... ..+
T Consensus 25 ~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 4679999987 466677777899999986221 1111 222221 234567777764322 236
Q ss_pred EEEcCCCEEEEEEcCCCce-----eEEeec-cccce-EEEEEe--cCCCCeEEEEeCCCeEEEEeCCCCCcee--eeccC
Q 021121 123 ITSSWDDTVKLWTVDRPTS-----VRTFKE-HAYCV-YNATWN--PRHSDVFCSASGDCTLRIWDVREMGSTM--IIPAH 191 (317)
Q Consensus 123 ~~~~~dg~v~iwd~~~~~~-----~~~~~~-~~~~v-~~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~ 191 (317)
+.+++||+|.-|...-+.. ...+.. ....| ..+++. ..+..+.++--..++|.+||-.-.+... .+...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7788999999998543222 112221 12223 234443 3223344445568899999854322111 01100
Q ss_pred -----ccc-----------eEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe--cCCCceeEEEecC------C
Q 021121 192 -----EFE-----------ILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN--GHGYAVRKVKFSP------H 247 (317)
Q Consensus 192 -----~~~-----------v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~~v~~~~~~~------~ 247 (317)
-.+ |+-..-.+ +.+.=+.|..-|.|-+||... + .++.+. +.-..-+.|+..| .
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~-~~~d~v~G~G~G~VdvFd~~G-~-l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDA-DRNDEVAGAGLGYVNVFTLNG-Q-LLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCC-cccccccCCCcceEEEEcCCC-c-EEEEeccCCcccCCceeeeChhhhCCCC
Confidence 000 11111122 222222334456899999875 3 244442 2223456777765 3
Q ss_pred CCeeEEeeecCCeEEEEecccccceeeeeeccc------ceeEeEEEEe
Q 021121 248 RRNLLASCSYDMTVCLWDFMVEDALVGRYDHHT------EFAVGVDMSV 290 (317)
Q Consensus 248 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~------~~v~~~~~~~ 290 (317)
+. +|+---.||+|..||..+++ .+..+.... ..++.+.|-.
T Consensus 261 g~-lLVGNFGDG~InaFD~~sG~-~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 261 GA-LLVGNFGDGTINAYDPQSGA-QLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CC-eEEeecCCceeEEecCCCCc-eeeeecCCCCCeEEecCeEEeeeCC
Confidence 44 67766679999999998876 223333222 2356777765
No 483
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.74 E-value=17 Score=35.15 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=20.9
Q ss_pred cCCCCeeEEeeecCCeEEEEeccccc
Q 021121 245 SPHRRNLLASCSYDMTVCLWDFMVED 270 (317)
Q Consensus 245 ~~~~~~~l~~~~~d~~i~vwd~~~~~ 270 (317)
++++. .++++-.||.+..||...+.
T Consensus 243 ~~~~~-~~v~~h~Dgs~~fWd~s~g~ 267 (993)
T KOG1983|consen 243 SRDGS-HFVSYHTDGSYAFWDVSSGK 267 (993)
T ss_pred ccCCc-eEEEEEecCCEEeeecCCCc
Confidence 77777 68999999999999988753
No 484
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.70 E-value=1.5 Score=22.81 Aligned_cols=30 Identities=13% Similarity=0.341 Sum_probs=20.9
Q ss_pred CCcceEEEEEecCCCCEEEEEcCC--CEEEEE
Q 021121 105 HTREVHSADYNPTRRDSFITSSWD--DTVKLW 134 (317)
Q Consensus 105 ~~~~v~~~~~~~~~~~~l~~~~~d--g~v~iw 134 (317)
....-....|+|||+.++.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 455677889999999666777666 666555
No 485
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=89.67 E-value=2.3 Score=29.81 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=33.1
Q ss_pred ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCC
Q 021121 5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSES 71 (317)
Q Consensus 5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 71 (317)
+....+.---|.++ ..++...+. ||+.|+.|.+....+.+..+..+........++|-|.
T Consensus 8 D~s~g~L~P~yD~d--t~llyl~gK-----GD~~ir~yEv~~~~p~l~~l~~~~s~~~~~G~~~lPK 67 (136)
T PF08954_consen 8 DTSSGVLMPFYDED--TNLLYLAGK-----GDGNIRYYEVSDESPYLHYLSEYRSPEPQKGFAFLPK 67 (136)
T ss_dssp ---SS-EEEEE-TT--T-EEEEEET-----T-S-EEEEEE-SSTTSEEEEEEE--SS--SEEEE--G
T ss_pred cCCCceeEeeEcCC--CCEEEEEec-----cCcEEEEEEEcCCCCceEEccccccCCCeEeeEecCc
Confidence 34455555667774 444444443 3999999999988877888888888888999999884
No 486
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.13 E-value=11 Score=30.56 Aligned_cols=226 Identities=12% Similarity=0.109 Sum_probs=120.4
Q ss_pred eeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCC---cceeeeeec------CCCCeeEEEecCCC--------
Q 021121 10 GYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAP---ALTELVAFD------TADGVYDLAWSESH-------- 72 (317)
Q Consensus 10 v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~---~~~~~~~~~------~~~~v~~~~~~~~~-------- 72 (317)
...|+|+| .+.+-++... .+...+||.+.... ....+.... .....+.+.|+...
T Consensus 25 ~WGia~~p--~~~~WVadng------T~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g 96 (336)
T TIGR03118 25 AWGLSYRP--GGPFWVANTG------TGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEG 96 (336)
T ss_pred cceeEecC--CCCEEEecCC------cceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCC
Confidence 45789999 5666666654 88999999973211 111112211 23457777777432
Q ss_pred ---CCeEEEEEcCCeEEEEEeCCCCCC--CCceeec-cCCcceE-EEEEecC--CCCEEEEEcCCCEEEEEEcCCCcee-
Q 021121 73 ---DSLLIAAVADGSVKIYDTALPPTA--NPIRSLH-EHTREVH-SADYNPT--RRDSFITSSWDDTVKLWTVDRPTSV- 142 (317)
Q Consensus 73 ---~~~l~~~~~dg~i~v~~~~~~~~~--~~~~~~~-~~~~~v~-~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~~~- 142 (317)
...++.+++||+|.-|........ .....+. .....|+ .+++... +..+.++--..++|.++|-.=.+..
T Consensus 97 ~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~ 176 (336)
T TIGR03118 97 ITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL 176 (336)
T ss_pred cccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC
Confidence 224677889999999996543220 1112222 1123343 4555433 3423444456789999985422111
Q ss_pred -EEeecc-----cc-----------ceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec--cCccceEEEEecC-
Q 021121 143 -RTFKEH-----AY-----------CVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP--AHEFEILACDWNK- 202 (317)
Q Consensus 143 -~~~~~~-----~~-----------~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~i~~~~- 202 (317)
..+... -. -|+-..-.++ .+-=+.+..-|.|-+||+. +..++.+. +.-.....|+..|
T Consensus 177 ~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~-~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa 254 (336)
T TIGR03118 177 PGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDAD-RNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPE 254 (336)
T ss_pred CCCccCCCCCCCCCCcceEEECCeEEEEEEecCCc-ccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChh
Confidence 001100 00 0111111122 1122234445789999975 56666663 1222345565544
Q ss_pred ----CCCcEEEEEecCCcEEEEEccCCCccEEEEecCC------CceeEEEecC
Q 021121 203 ----YDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHG------YAVRKVKFSP 246 (317)
Q Consensus 203 ----~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~------~~v~~~~~~~ 246 (317)
..+.+|+---.||+|..||..+++. +-.+.... ...+.|.|-.
T Consensus 255 ~FG~~sg~lLVGNFGDG~InaFD~~sG~~-~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 255 SFGSLSGALLVGNFGDGTINAYDPQSGAQ-LGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred hhCCCCCCeEEeecCCceeEEecCCCCce-eeeecCCCCCeEEecCeEEeeeCC
Confidence 2577788777899999999987764 33333221 2456777754
No 487
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=89.04 E-value=20 Score=33.64 Aligned_cols=67 Identities=16% Similarity=0.045 Sum_probs=47.3
Q ss_pred cceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee----c-----------c----CccceEEEEecCCCCcEEEE
Q 021121 150 YCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII----P-----------A----HEFEILACDWNKYDDCLIAS 210 (317)
Q Consensus 150 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~-----------~----~~~~v~~i~~~~~~~~~l~~ 210 (317)
..|.++..... +..++....||+|.++|-.+.+.+... . + ...++..++||| +...++.
T Consensus 260 ~~V~si~~~~~-~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSP-t~c~~v~ 337 (753)
T PF11635_consen 260 KRVVSITSPEL-DIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSP-TMCSLVQ 337 (753)
T ss_pred CeEEEEEeccc-CcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECc-ccceEEE
Confidence 45777776666 678889999999999998877544333 1 0 011234578999 8888888
Q ss_pred EecCCcEE
Q 021121 211 ASVDKSIK 218 (317)
Q Consensus 211 ~~~d~~i~ 218 (317)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 88888866
No 488
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=88.83 E-value=17 Score=32.41 Aligned_cols=177 Identities=14% Similarity=0.161 Sum_probs=99.6
Q ss_pred CEEEEEEcCCCceeEEee--ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCc
Q 021121 129 DTVKLWTVDRPTSVRTFK--EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDC 206 (317)
Q Consensus 129 g~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 206 (317)
+.|.+.| ++.+.+..+. +....|.++.|.-+ .-+++|=-.--=+.+.|+.+.+..+.+-..+-+=.+=-.+|.+.+
T Consensus 304 N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd-~~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIPGfS~YLHP~~e~ 381 (521)
T PF09826_consen 304 NNLYVLD-EDLKIVGSLEGLAPGERIYSVRFMGD-RAYLVTFRQVDPLFVIDLSDPANPKVLGELKIPGFSDYLHPYDEN 381 (521)
T ss_pred EEEEEEC-CCCcEeEEccccCCCceEEEEEEeCC-eEEEEEEeecCceEEEECCCCCCCceeeEEECccchhceeECCCC
Confidence 4566776 5555555554 34568999999976 666666555456889999887655443222222223334554544
Q ss_pred EEEEEecC------------CcEEEEEccCCCccEEEEe---cCC-------CceeEEEecCCCCeeEEeeec-------
Q 021121 207 LIASASVD------------KSIKIWDVRNYRVPIAVLN---GHG-------YAVRKVKFSPHRRNLLASCSY------- 257 (317)
Q Consensus 207 ~l~~~~~d------------~~i~v~d~~~~~~~~~~~~---~~~-------~~v~~~~~~~~~~~~l~~~~~------- 257 (317)
+|+.-+.+ =+|.+||+.....|..... +.. ..-.++.|++... +|+---.
T Consensus 382 ~LlGiG~~~~~~~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAfl~~~~~~-ll~~Pv~~~~~~~~ 460 (521)
T PF09826_consen 382 HLLGIGKDTDEDEGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAFLFDKEKN-LLAFPVSSSYGYFN 460 (521)
T ss_pred eEEEEcccCcccccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEEEEeCCCC-EEEEEEEEccCccc
Confidence 44443322 2478999988765443321 100 1234678888776 4433222
Q ss_pred CCeEEEEeccccc--ceeeeeecccc------eeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121 258 DMTVCLWDFMVED--ALVGRYDHHTE------FAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312 (317)
Q Consensus 258 d~~i~vwd~~~~~--~~~~~~~~~~~------~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~ 312 (317)
-..+.++++...+ .....+..... .+....+. +..|.+.+ ++.|+++++++
T Consensus 461 ~~g~~v~~i~~~~g~~~~g~i~h~~~~~~~~~~~~R~lyi---~d~lYtvS-~~~i~~~~l~t 519 (521)
T PF09826_consen 461 FQGAYVFSIDPEDGFTLKGKITHPSPDYYYSYQIQRSLYI---GDTLYTVS-DNGIKAYDLNT 519 (521)
T ss_pred cceEEEEEEeCCCCeEEEEEEEccCcccccccceeEEEEE---CCEEEEEE-CCEEEEEehHh
Confidence 1347788877332 22223332222 25555555 55788876 45699998865
No 489
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=88.79 E-value=21 Score=33.60 Aligned_cols=167 Identities=10% Similarity=0.099 Sum_probs=100.1
Q ss_pred ecCcceeEEEEe---cC--CCCeEEEEEecccccccCceEEEEe------cCCCCC-----cceeeeeec----CCCCee
Q 021121 5 KTPFNGYSVKFS---PF--YESRLAVATAQNFGILGNGRVHVLD------LSPAAP-----ALTELVAFD----TADGVY 64 (317)
Q Consensus 5 ~~~~~v~~~~~~---p~--~~~~~~~~~~~~~~~~~~g~i~i~~------~~~~~~-----~~~~~~~~~----~~~~v~ 64 (317)
....+|..|+|. .. +...+++.-. ...+.|+. +..... ....+..+. ...+..
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-------~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~a 149 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-------ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHA 149 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-------CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccc
Confidence 456788999998 31 1223444433 34777877 221111 112222222 234678
Q ss_pred EEEecCCCCCeEEEEEcCCeEEEEEeCCCCCC--CCceeeccCC----------cceEEEEEecCCCCEEEEEcCCCEEE
Q 021121 65 DLAWSESHDSLLIAAVADGSVKIYDTALPPTA--NPIRSLHEHT----------REVHSADYNPTRRDSFITSSWDDTVK 132 (317)
Q Consensus 65 ~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~--~~~~~~~~~~----------~~v~~~~~~~~~~~~l~~~~~dg~v~ 132 (317)
+++|+|.....||.....|.-.||++...... ........+. ..-..+.|.++.. .|+.++. ..+.
T Consensus 150 Dv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~-~lLv~~r-~~l~ 227 (765)
T PF10214_consen 150 DVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSN-RLLVCNR-SKLM 227 (765)
T ss_pred eEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCC-EEEEEcC-CceE
Confidence 99999988789999999999999999321111 1111111111 2234788887766 6666664 5789
Q ss_pred EEEcCCCceeE--EeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCC
Q 021121 133 LWTVDRPTSVR--TFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181 (317)
Q Consensus 133 iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 181 (317)
++|+++..... ........|..+.-+|.+..+++.-+ ...|...|+..
T Consensus 228 ~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 228 LIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred EEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 99999876533 12234567888888887555554443 35777788776
No 490
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=88.70 E-value=21 Score=33.56 Aligned_cols=162 Identities=10% Similarity=0.157 Sum_probs=97.9
Q ss_pred cCCcceEEEEEe---cC--CCCEEEEEcCCCEEEEEEcCCC---------------ceeEEeec---cccceEEEEEecC
Q 021121 104 EHTREVHSADYN---PT--RRDSFITSSWDDTVKLWTVDRP---------------TSVRTFKE---HAYCVYNATWNPR 160 (317)
Q Consensus 104 ~~~~~v~~~~~~---~~--~~~~l~~~~~dg~v~iwd~~~~---------------~~~~~~~~---~~~~v~~~~~~~~ 160 (317)
....+|..|+|. .. .....+..-....+.|+...-. .++..+.. ...+...++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 457889999998 21 1112444455667777772211 22223321 2346789999999
Q ss_pred CCCeEEEEeCCCeEEEEeCCCC----Cceeeec-cC----------ccceEEEEecCCCCcEEEEEecCCcEEEEEccCC
Q 021121 161 HSDVFCSASGDCTLRIWDVREM----GSTMIIP-AH----------EFEILACDWNKYDDCLIASASVDKSIKIWDVRNY 225 (317)
Q Consensus 161 ~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~-~~----------~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~ 225 (317)
....||+....|...|||+... .....+. .. ......+.|.+ +.+.|+.++ ...+.++|+++.
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~-r~~l~~~d~~~~ 234 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCN-RSKLMLIDFESN 234 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEc-CCceEEEECCCC
Confidence 8889999999999999999211 1111111 11 12234788887 666666665 456899999876
Q ss_pred CccE-EEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121 226 RVPI-AVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV 268 (317)
Q Consensus 226 ~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~ 268 (317)
.... .........|..+.-+|....+++.-. ...|...++..
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 5412 122234467888888887433222222 35677778776
No 491
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=88.56 E-value=17 Score=32.23 Aligned_cols=218 Identities=12% Similarity=0.146 Sum_probs=101.6
Q ss_pred ceeEEEEecCCCC--eEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCC---CCC------eEE
Q 021121 9 NGYSVKFSPFYES--RLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSES---HDS------LLI 77 (317)
Q Consensus 9 ~v~~~~~~p~~~~--~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~------~l~ 77 (317)
...++.+-. ++ .+.+++.. +|+.+.-|... .+..+..+..-++|.+++..+. +.. .|+
T Consensus 257 ~~s~l~~l~--~g~d~lf~gs~~-----gds~l~~~~~~----~l~~~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv 325 (504)
T PF10433_consen 257 IASSLTYLK--NGGDYLFVGSEF-----GDSQLLQISLS----NLEVLDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLV 325 (504)
T ss_dssp -ESEEEEES--TT--EEEEEESS-----S-EEEEEEESE----SEEEEEEE----SEEEEEEE-TSSSSS-------EEE
T ss_pred hhheEEEEc--CCCEEEEEEEec-----CCcEEEEEeCC----CcEEEEeccCcCCccceEEeccccCCCCcccccceEE
Confidence 345566665 45 66666553 37676666622 3566666777889999998632 222 455
Q ss_pred EEE---cCCeEEEEEeCCCCCCCCceeeccC--CcceEEEEEecCCCCEEEEEcCCCEEEEEEcC---CCceeEEee--c
Q 021121 78 AAV---ADGSVKIYDTALPPTANPIRSLHEH--TREVHSADYNPTRRDSFITSSWDDTVKLWTVD---RPTSVRTFK--E 147 (317)
Q Consensus 78 ~~~---~dg~i~v~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~---~~~~~~~~~--~ 147 (317)
+++ .+|.+++..-.-+-. ........- -..++.+........+++.+.. ..-+++.+. ..+.+.... +
T Consensus 326 ~~sG~g~~gsL~~lr~Gi~~~-~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~-~~T~vl~~~~~d~~e~~~e~~~~~ 403 (504)
T PF10433_consen 326 ACSGAGKRGSLRILRNGIGIE-GLELASSELPGVTGIWTLKLSSSDHSYLVLSFP-NETRVLQISEGDDGEEVEEVEEDG 403 (504)
T ss_dssp EEESSGGG-EEEEEEESBEEE---EEEEEEESTEEEEEEE-SSSSSBSEEEEEES-SEEEEEEES----SSEEEEE---T
T ss_pred EEECcCCCCcEEEEeccCCce-eeeeeccCCCCceEEEEeeecCCCceEEEEEcC-CceEEEEEecccCCcchhhhhhcc
Confidence 554 468898886432211 011111111 3344445443322335555554 455566653 233332221 1
Q ss_pred c---ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc-CccceEEEEecCCCCcEEEEEecCCcEEEEEcc
Q 021121 148 H---AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA-HEFEILACDWNKYDDCLIASASVDKSIKIWDVR 223 (317)
Q Consensus 148 ~---~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~ 223 (317)
. ...+.+-.+. ...++=.... .|++.+....+....... ....|.+.+.. +.+++.+..++.+..+.+.
T Consensus 404 f~~~~~Tl~~~~~~---~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~---~~~v~v~~~~~~~~~~~~~ 476 (504)
T PF10433_consen 404 FDTDEPTLAAGNVG---DGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSIIVAASIN---DPQVLVALSGGELVYFELD 476 (504)
T ss_dssp S-SSS-EEEEEEET---TTEEEEEESS-EEEEEESSSTSEEEEEE-TTS---SEEEES---SSEEEEEE-TTEEEEEEEE
T ss_pred CCCCCCCeEEEEcC---CCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCeEEEEEEC---CCEEEEEEeCCcEEEEEEE
Confidence 1 1122222222 3455555544 488888877666655432 34455555554 3455566668889999888
Q ss_pred CCCccEEEEec----CCCceeEEEecC
Q 021121 224 NYRVPIAVLNG----HGYAVRKVKFSP 246 (317)
Q Consensus 224 ~~~~~~~~~~~----~~~~v~~~~~~~ 246 (317)
........... ....|.|+...|
T Consensus 477 ~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 477 DNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp TTEEEEEEE----EE-SS-EEEEE---
T ss_pred CCceeeeeeccccccCCCceEEEEeCC
Confidence 75542232211 456788887766
No 492
>PLN02153 epithiospecifier protein
Probab=88.26 E-value=14 Score=30.79 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=26.2
Q ss_pred CeEEEEeCCCCCceee-----eccCccceEEEEecCCCCcEEEEEecC--------------CcEEEEEccCC
Q 021121 172 CTLRIWDVREMGSTMI-----IPAHEFEILACDWNKYDDCLIASASVD--------------KSIKIWDVRNY 225 (317)
Q Consensus 172 g~i~i~d~~~~~~~~~-----~~~~~~~v~~i~~~~~~~~~l~~~~~d--------------~~i~v~d~~~~ 225 (317)
..+.+||+.+.+=... .+... ...+++.. ++.+++.|+.. ..+..||..+.
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~ 286 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSAR-SVFAHAVV--GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL 286 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCc-ceeeeEEE--CCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence 4588899876532211 11111 11222222 56778887752 25778887654
No 493
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.22 E-value=15 Score=31.03 Aligned_cols=188 Identities=12% Similarity=0.082 Sum_probs=102.7
Q ss_pred EEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEec----CCCC--eEEEEeCC---CeEEEEeCCCC-Cceeeecc
Q 021121 121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP----RHSD--VFCSASGD---CTLRIWDVREM-GSTMIIPA 190 (317)
Q Consensus 121 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~----~~~~--~l~~~~~d---g~i~i~d~~~~-~~~~~~~~ 190 (317)
+++....++-+.+||++ |+.+..+. .+.++.+..-. .+.. ++++...+ ..|++|.+... ..+..+..
T Consensus 70 lIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~ 146 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD 146 (381)
T ss_dssp EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred eEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence 78888889999999997 55556554 23334333221 2122 23333332 46999977532 22332221
Q ss_pred -------CccceEEEEe--cCCCCc-EEEEEecCCcEEEEEccCCC------ccEEEEecCCCceeEEEecCCCCeeEEe
Q 021121 191 -------HEFEILACDW--NKYDDC-LIASASVDKSIKIWDVRNYR------VPIAVLNGHGYAVRKVKFSPHRRNLLAS 254 (317)
Q Consensus 191 -------~~~~v~~i~~--~~~~~~-~l~~~~~d~~i~v~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 254 (317)
....++.+++ +|.++. +++....+|.+..|.+.... .+++.+.. ...+-.|....... .|+.
T Consensus 147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g-~LYv 224 (381)
T PF02333_consen 147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETG-RLYV 224 (381)
T ss_dssp TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTT-EEEE
T ss_pred CCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccC-CEEE
Confidence 1123455554 453444 56667788988888775321 13445543 34788888887777 5888
Q ss_pred eecCCeEEEEeccccc----ceeeeee--cccceeEeEEEEec--cCC-eEEEeecCCcEEEEecCCC
Q 021121 255 CSYDMTVCLWDFMVED----ALVGRYD--HHTEFAVGVDMSVL--VEG-LLASTGWDELVYVWQQGMD 313 (317)
Q Consensus 255 ~~~d~~i~vwd~~~~~----~~~~~~~--~~~~~v~~~~~~~~--~~~-~l~s~~~dg~i~~w~~~~~ 313 (317)
+-++.-|.-|+.+... .++.... +....|..|+.-.. +.. +|+|.-.+++..+|+....
T Consensus 225 gEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 225 GEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred ecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 8888777777765322 2222222 23456788888643 223 5555557889999998753
No 494
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=88.21 E-value=18 Score=32.08 Aligned_cols=251 Identities=10% Similarity=0.106 Sum_probs=116.3
Q ss_pred CCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecC-CCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCC
Q 021121 20 ESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDT-ADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANP 98 (317)
Q Consensus 20 ~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~ 98 (317)
...++.+.. +|.++...+..... ...+..++. .....++.+..++..+++.|+.-|.=.++.+... ....
T Consensus 222 ~~~~lL~~e-------~G~l~~l~l~~~~~-~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~-~l~~ 292 (504)
T PF10433_consen 222 GDRILLQDE-------DGDLYLLTLDNDGG-SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLS-NLEV 292 (504)
T ss_dssp SSEEEEEET-------TSEEEEEEEEEEEE-EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESE-SEEE
T ss_pred CCEEEEEeC-------CCeEEEEEEEECCC-eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCC-CcEE
Confidence 445555554 89998888876542 112333333 4556677777654348888888776555555522 2233
Q ss_pred ceeeccCCcceEEEEEecC---CCC------EEEEEc---CCCEEEEEEcCCCceeE--E--eecc--ccceEEEEEecC
Q 021121 99 IRSLHEHTREVHSADYNPT---RRD------SFITSS---WDDTVKLWTVDRPTSVR--T--FKEH--AYCVYNATWNPR 160 (317)
Q Consensus 99 ~~~~~~~~~~v~~~~~~~~---~~~------~l~~~~---~dg~v~iwd~~~~~~~~--~--~~~~--~~~v~~~~~~~~ 160 (317)
+..+. .-++|..++..+. +.. .+++++ .+|.+++..- |-... . .... -..++.+.....
T Consensus 293 ~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~--Gi~~~~~~~~~~~l~~v~~iW~l~~~~~ 369 (504)
T PF10433_consen 293 LDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN--GIGIEGLELASSELPGVTGIWTLKLSSS 369 (504)
T ss_dssp EEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE--SBEEE--EEEEEEESTEEEEEEE-SSSS
T ss_pred EEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec--cCCceeeeeeccCCCCceEEEEeeecCC
Confidence 33333 3578888888532 221 344443 5678888742 32222 1 1111 233455544432
Q ss_pred CCCeEEEEeCCCeEEEEeCC---CCCceeee-----ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEE
Q 021121 161 HSDVFCSASGDCTLRIWDVR---EMGSTMII-----PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVL 232 (317)
Q Consensus 161 ~~~~l~~~~~dg~i~i~d~~---~~~~~~~~-----~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 232 (317)
+..+++.+..+ .-+++.+. ..+.+..+ ......+.+-.+ .+..++=.+. ..|++.+....+......
T Consensus 370 ~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~---~~~~ivQVt~-~~i~l~~~~~~~~~~~w~ 444 (504)
T PF10433_consen 370 DHSYLVLSFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNV---GDGRIVQVTP-KGIRLIDLEDGKLTQEWK 444 (504)
T ss_dssp SBSEEEEEESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEE---TTTEEEEEES-SEEEEEESSSTSEEEEEE
T ss_pred CceEEEEEcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEc---CCCeEEEEec-CeEEEEECCCCeEEEEEe
Confidence 24566555554 44455553 23332222 111111222222 1334444443 458888877655322222
Q ss_pred ecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeec----ccceeEeEEEEe
Q 021121 233 NGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH----HTEFAVGVDMSV 290 (317)
Q Consensus 233 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~----~~~~v~~~~~~~ 290 (317)
......|.+.+... . .++.+..++.+..+.+............ ....|.++...|
T Consensus 445 ~~~~~~I~~a~~~~--~-~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 445 PPAGSIIVAASIND--P-QVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp -TTS---SEEEESS--S-EEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred CCCCCeEEEEEECC--C-EEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 33455676666653 3 3555556888999988776532222211 356677777765
No 495
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=87.77 E-value=4.5 Score=36.25 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=23.3
Q ss_pred CeeEEEecC---CCCCeEEEEEcCCeEEEEEeCCC
Q 021121 62 GVYDLAWSE---SHDSLLIAAVADGSVKIYDTALP 93 (317)
Q Consensus 62 ~v~~~~~~~---~~~~~l~~~~~dg~i~v~~~~~~ 93 (317)
....++.++ ++..++++.+.|+.+|+||+.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~ 250 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETG 250 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTT
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCC
Confidence 455566655 23479999999999999999876
No 496
>PLN02193 nitrile-specifier protein
Probab=87.15 E-value=20 Score=31.47 Aligned_cols=144 Identities=10% Similarity=0.062 Sum_probs=67.3
Q ss_pred CeEEEEEcC-----CeEEEEEeCCCCCCCCceeecc--CCcceEEEEEecCCCCEEEEEcCC-----CEEEEEEcCCCce
Q 021121 74 SLLIAAVAD-----GSVKIYDTALPPTANPIRSLHE--HTREVHSADYNPTRRDSFITSSWD-----DTVKLWTVDRPTS 141 (317)
Q Consensus 74 ~~l~~~~~d-----g~i~v~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~ 141 (317)
.+.+.|+.+ ..+..||+.+. .+..+..... ....-.++.. -++. +++.|+.+ ..+..||+.+.+-
T Consensus 230 ~lYvfGG~~~~~~~ndv~~yD~~t~-~W~~l~~~~~~P~~R~~h~~~~-~~~~-iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 230 TLYVFGGRDASRQYNGFYSFDTTTN-EWKLLTPVEEGPTPRSFHSMAA-DEEN-VYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred EEEEECCCCCCCCCccEEEEECCCC-EEEEcCcCCCCCCCccceEEEE-ECCE-EEEECCCCCCCCcceEEEEECCCCEE
Confidence 566666654 35777787653 2222222110 0111112222 2334 66666654 3467788776532
Q ss_pred eEEeec------cccceEEEEEecCCCCeEEEEeCC----CeEEEEeCCCCCceeeec----cCccceEEEEecCCCCcE
Q 021121 142 VRTFKE------HAYCVYNATWNPRHSDVFCSASGD----CTLRIWDVREMGSTMIIP----AHEFEILACDWNKYDDCL 207 (317)
Q Consensus 142 ~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~----~~~~~v~~i~~~~~~~~~ 207 (317)
. .+.. ..... .++.. + +++++.++.+ ..+.+||+.+.+=...-. .......+++.. ++++
T Consensus 307 ~-~~~~~~~~~~~R~~~-~~~~~-~-gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~--~~~i 380 (470)
T PLN02193 307 F-HCSTPGDSFSIRGGA-GLEVV-Q-GKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV--GKHI 380 (470)
T ss_pred E-eCCCCCCCCCCCCCc-EEEEE-C-CcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE--CCEE
Confidence 2 1110 11111 12222 3 5677777655 458899988753221110 011111222222 5678
Q ss_pred EEEEecC--------------CcEEEEEccCCC
Q 021121 208 IASASVD--------------KSIKIWDVRNYR 226 (317)
Q Consensus 208 l~~~~~d--------------~~i~v~d~~~~~ 226 (317)
++.|+.. ..+.+||+.+.+
T Consensus 381 yv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 381 VIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred EEECCccCCccccccCccceeccEEEEEcCcCE
Confidence 8888753 247788887643
No 497
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=86.62 E-value=27 Score=32.40 Aligned_cols=236 Identities=13% Similarity=0.235 Sum_probs=0.0
Q ss_pred CCceecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEE
Q 021121 1 MPVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAV 80 (317)
Q Consensus 1 ~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 80 (317)
|.+|.|-..++.+.|.-+ .+-++.... |.. +.......+. .-.++|...+|+.|. ..++...
T Consensus 70 l~s~~hf~~~~~~~f~~~-~gDii~~~~-------dp~-------p~e~~~eivG--~v~nGIvaa~wS~DE-~~~cvvt 131 (1243)
T COG5290 70 LLSFKHFHVLTFEYFLID-EGDIIHLVN-------DPT-------PAELEMEIVG--KVSNGIVAASWSADE-KTWCVVT 131 (1243)
T ss_pred hhhhhhhhhhheeeEEec-CCcEEEEEc-------CCC-------cccchhhhhc--cccCceEEEeeccCC-ceEEEEE
Q ss_pred cCCeEEEEEeCCCCCCCCceeeccCCcce------EEEEEe------------------------cCCCCEEEEEcCCCE
Q 021121 81 ADGSVKIYDTALPPTANPIRSLHEHTREV------HSADYN------------------------PTRRDSFITSSWDDT 130 (317)
Q Consensus 81 ~dg~i~v~~~~~~~~~~~~~~~~~~~~~v------~~~~~~------------------------~~~~~~l~~~~~dg~ 130 (317)
.+..|.+++ +...++....-..+.. ..+.|. ..|. +........
T Consensus 132 ~~r~il~~~----k~fd~ise~~L~~~dl~ef~khi~VgWgkketqfrgk~~raqlrdptmp~~vD~G~--l~avd~~k~ 205 (1243)
T COG5290 132 STREILLFD----KYFDPISEYHLKKSDLVEFGKHIRVGWGKKETQFRGKGARAQLRDPTMPYMVDYGD--LFAVDTNKK 205 (1243)
T ss_pred cCceEEEEe----ccccccchhhcchhHHHHhccceEeeecccchhccccchhhhccCCCCcccccccc--eeEeeCCce
Q ss_pred EEEE--EcC--------------------CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCe-----EEEEeCCCC-
Q 021121 131 VKLW--TVD--------------------RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCT-----LRIWDVREM- 182 (317)
Q Consensus 131 v~iw--d~~--------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~- 182 (317)
+..| |.+ .|+.-..-....+.-..+.|-|+ +..+++-..||. |.++..+..
T Consensus 206 ~i~wrgD~~y~~v~r~Ee~prra~rvysreg~lds~sep~~g~e~~LSWkpq-gS~~ati~td~~~~S~~ViFfErNGLr 284 (1243)
T COG5290 206 IIFWRGDTEYNLVGRSEERPRRAFRVYSREGQLDSASEPVTGMEHQLSWKPQ-GSKYATIGTDGCSTSESVIFFERNGLR 284 (1243)
T ss_pred EEEEccCcceeeecchhcccccceeeeccccccccccCCcccchhccccccC-CceeeeeccCCCCCcceEEEEccCCcc
Q ss_pred -CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeE
Q 021121 183 -GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTV 261 (317)
Q Consensus 183 -~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 261 (317)
.....-.+....+..++|+- ....++.+. .+.+.+|-..+..- .....-.-..+.-+.|+|...+-|.-.+.+...
T Consensus 285 HGef~lr~~~dEk~~~~~wn~-~s~vlav~~-~n~~~lwttkNyhW-YLK~e~~ip~~s~vkwhpe~~nTl~f~d~~~I~ 361 (1243)
T COG5290 285 HGEFDLRVGCDEKAFLENWNL-LSTVLAVAE-GNLLKLWTTKNYHW-YLKVERQIPGISYVKWHPEEKNTLLFRDGERIL 361 (1243)
T ss_pred cCCccccCCchhhhhhhhhhH-HHHHHHHhh-cceEEEEEccceEE-EEEEeecCCCcceeeeccccCcEEEEecCCeEE
Q ss_pred EEE
Q 021121 262 CLW 264 (317)
Q Consensus 262 ~vw 264 (317)
+++
T Consensus 362 ~V~ 364 (1243)
T COG5290 362 RVF 364 (1243)
T ss_pred EEE
No 498
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=86.28 E-value=8.8 Score=36.95 Aligned_cols=115 Identities=16% Similarity=0.119 Sum_probs=70.5
Q ss_pred cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121 6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV 85 (317)
Q Consensus 6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 85 (317)
..++|.+++=. .|.++.+.++ +|.+|+++.+.. +..+...+.+--|.++. --. ++|+.|..-..|
T Consensus 1096 ~KGtVsavceV---~G~l~~~~Gq--------KI~v~~l~r~~~-ligVaFiD~~~yv~s~~--~vk-nlIl~gDV~ksi 1160 (1366)
T KOG1896|consen 1096 QKGTVSAVCEV---RGHLLSSQGQ--------KIIVRKLDRDSE-LIGVAFIDLPLYVHSMK--VVK-NLILAGDVMKSI 1160 (1366)
T ss_pred cccceEEEEEe---ccEEEEccCc--------EEEEEEeccCCc-ceeeEEeccceeEEehh--hhh-hheehhhhhhce
Confidence 34556555443 4788887766 999999966552 44444444433333332 223 578888777778
Q ss_pred EEEEeCCCCCCCCceeec--cCCcceEEEEEecCCCC-EEEEEcCCCEEEEEEcC
Q 021121 86 KIYDTALPPTANPIRSLH--EHTREVHSADYNPTRRD-SFITSSWDDTVKLWTVD 137 (317)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~-~l~~~~~dg~v~iwd~~ 137 (317)
.+..+... ...+..+. ...-.+.++.|.-+|.+ .++++..++.|++|-..
T Consensus 1161 sfl~fqee--p~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1161 SFLGFQEE--PYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred EEEEEccC--ceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 88877643 22222222 23346788888777654 57788889998887543
No 499
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=86.11 E-value=13 Score=34.95 Aligned_cols=90 Identities=10% Similarity=0.080 Sum_probs=62.3
Q ss_pred CeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEE-EecCC-----cEEEEEccCCCccEEEEecCC
Q 021121 163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIAS-ASVDK-----SIKIWDVRNYRVPIAVLNGHG 236 (317)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~-~~~d~-----~i~v~d~~~~~~~~~~~~~~~ 236 (317)
++.......+.|.+-|.....+...-..+..++.+-+|+| +++.|+- .+.++ .|++-|+++...-+..+.-.+
T Consensus 320 kiAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SP-DG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~ 398 (912)
T TIGR02171 320 KLAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISP-DGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVEN 398 (912)
T ss_pred eEEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCC-CCCEEEEEEeecCCCCCceEEEEehhccCCCceEeeccc
Confidence 3444443445888888776555443134678899999999 9988887 44444 488999988665556666667
Q ss_pred CceeEEEecCCCCeeEE
Q 021121 237 YAVRKVKFSPHRRNLLA 253 (317)
Q Consensus 237 ~~v~~~~~~~~~~~~l~ 253 (317)
..|..-...++|...|+
T Consensus 399 aaiprwrv~e~gdt~iv 415 (912)
T TIGR02171 399 AAIPRWRVLENGDTVIV 415 (912)
T ss_pred ccccceEecCCCCeEEE
Confidence 78888888888876444
No 500
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=85.67 E-value=32 Score=32.40 Aligned_cols=138 Identities=11% Similarity=0.244 Sum_probs=79.7
Q ss_pred cCCCEEEEEEcCCCceeEEeeccccceEEEEE-ecCCCC--------eEEEEeCCCeEEEEeC----CCCCce-----ee
Q 021121 126 SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATW-NPRHSD--------VFCSASGDCTLRIWDV----REMGST-----MI 187 (317)
Q Consensus 126 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--------~l~~~~~dg~i~i~d~----~~~~~~-----~~ 187 (317)
+.|+.+.+|+..++...+.+......|..+.. -|. .+ +|+.++ ...+.++-+ ++++.. ..
T Consensus 99 T~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPk-antFvs~i~hlL~vAT-~~e~~ilgvs~d~~T~Els~fnTgl~ 176 (1263)
T COG5308 99 TNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPK-ANTFVSRISHLLFVAT-EKEVMILGVSKDTKTGELSLFNTGLV 176 (1263)
T ss_pred EcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccC-CcccHHhhhhhhhhhh-hheeeEEEEEeccccceeEEEecceE
Confidence 45789999999987666555544444544443 232 22 222221 223333322 222211 11
Q ss_pred eccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCC-----------c-----------cE-EEEecCCCceeEEEe
Q 021121 188 IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR-----------V-----------PI-AVLNGHGYAVRKVKF 244 (317)
Q Consensus 188 ~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~-----------~-----------~~-~~~~~~~~~v~~~~~ 244 (317)
.......|.|+.-+. +|+.+++|..| ..+|.+.-.. . |. .....|+..|..++.
T Consensus 177 vsvqGinV~civs~e-~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~v 253 (1263)
T COG5308 177 VSVQGINVRCIVSEE-DGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAV 253 (1263)
T ss_pred EeccCceeEEEEecc-CCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheee
Confidence 122345688888887 89999988777 6677654110 0 00 112246678888998
Q ss_pred cCCCCeeEEeeecCCeEEEEecccc
Q 021121 245 SPHRRNLLASCSYDMTVCLWDFMVE 269 (317)
Q Consensus 245 ~~~~~~~l~~~~~d~~i~vwd~~~~ 269 (317)
..... +|.+-..-..|+-|.+...
T Consensus 254 DqsRg-~ly~Lr~kS~Vray~itkn 277 (1263)
T COG5308 254 DQSRG-LLYVLRKKSAVRAYSITKN 277 (1263)
T ss_pred ccccc-ceeeecccceeeeEeeecc
Confidence 87665 7888888888888887654
Done!