Your job contains 1 sequence.
>021122
MATRQKLKGKLYHEENGEEEEKLKSAAAMSSDDEEGNEDLSLKIVEKHMLMRAAKLDQDD
SDSDVVLNDNTNTNTSDNSNNKNGGVEAVVPGPSGTTDDVIIEDVKSSDKKRIRVRKKKK
KEADKIEIEDQSVIVRKEEQKVETADNGDEGVTTVEISDNIVLRKLLRGPRYFDPPDRGW
QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD
KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGE
VSCFRCGQLGHTGLVSW
The BLAST search returned 31 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 021122
(317 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2079859 - symbol:AT3G43590 species:3702 "Arabi... 649 4.2e-69 2
TAIR|locus:2098164 - symbol:AT3G43490 species:3702 "Arabi... 242 5.6e-25 2
TAIR|locus:2183607 - symbol:AT5G36240 species:3702 "Arabi... 230 3.1e-19 1
ZFIN|ZDB-GENE-030131-7782 - symbol:cnbpb "CCHC-type zinc ... 219 4.6e-18 1
ZFIN|ZDB-GENE-030131-5045 - symbol:cnbpa "CCHC-type zinc ... 214 1.6e-17 1
UNIPROTKB|B4DP17 - symbol:CNBP "cDNA FLJ61146, highly sim... 203 2.3e-16 1
MGI|MGI:88431 - symbol:Cnbp "cellular nucleic acid bindin... 201 3.7e-16 1
ASPGD|ASPL0000028407 - symbol:AN5111 species:162425 "Emer... 201 3.7e-16 1
POMBASE|SPAC13D6.02c - symbol:byr3 "zinc finger protein B... 201 3.7e-16 1
UNIPROTKB|E2RPD7 - symbol:CNBP "Uncharacterized protein" ... 198 7.7e-16 1
UNIPROTKB|F8WFK2 - symbol:Cnbp "Cellular nucleic acid-bin... 198 7.7e-16 1
UNIPROTKB|P62633 - symbol:CNBP "Cellular nucleic acid-bin... 196 1.3e-15 1
UNIPROTKB|Q4R501 - symbol:Q4R501 "Brain cDNA, clone: QnpA... 196 1.3e-15 1
UNIPROTKB|Q5R5R5 - symbol:CNBP "Cellular nucleic acid-bin... 196 1.3e-15 1
RGD|621807 - symbol:Cnbp "CCHC-type zinc finger, nucleic ... 196 1.3e-15 1
UNIPROTKB|P62634 - symbol:Cnbp "Cellular nucleic acid-bin... 196 1.3e-15 1
UNIPROTKB|Q3T0Q6 - symbol:CNBP "Cellular nucleic acid-bin... 196 1.3e-15 1
SGD|S000005199 - symbol:GIS2 "Translational activator for... 195 1.6e-15 1
UNIPROTKB|F1N8C2 - symbol:CNBP "Cellular nucleic acid-bin... 186 1.4e-14 1
UNIPROTKB|O42395 - symbol:CNBP "Cellular nucleic acid-bin... 184 2.3e-14 1
UNIPROTKB|G3MZ41 - symbol:ZCCHC13 "Uncharacterized protei... 179 7.9e-14 1
UNIPROTKB|F1NI84 - symbol:CNBP "Cellular nucleic acid-bin... 177 1.3e-13 1
UNIPROTKB|Q8WW36 - symbol:ZCCHC13 "Zinc finger CCHC domai... 175 2.1e-13 1
UNIPROTKB|J9NRQ2 - symbol:ZCCHC13 "Uncharacterized protei... 174 2.7e-13 1
CGD|CAL0002417 - symbol:GIS2 species:5476 "Candida albica... 162 5.6e-12 1
UNIPROTKB|Q59YJ9 - symbol:GIS2 "Putative uncharacterized ... 162 5.6e-12 1
TAIR|locus:2156647 - symbol:AT5G52380 species:3702 "Arabi... 172 1.0e-11 1
DICTYBASE|DDB_G0293328 - symbol:DDB_G0293328 "Cellular nu... 154 5.1e-11 1
FB|FBgn0034802 - symbol:CG3800 species:7227 "Drosophila m... 153 6.6e-11 1
TAIR|locus:2135139 - symbol:CSDP1 "cold shock domain prot... 155 3.4e-09 1
UNIPROTKB|G4N4A8 - symbol:MGG_05948 "Zinc knuckle domain-... 142 7.6e-09 1
TAIR|locus:2005719 - symbol:AT1G75560 species:3702 "Arabi... 149 1.1e-08 1
UNIPROTKB|E1BZR6 - symbol:ZCCHC9 "Uncharacterized protein... 147 1.2e-08 1
TAIR|locus:2827810 - symbol:CSP3 "cold shock domain prote... 150 1.4e-08 1
WB|WBGene00017210 - symbol:F07E5.5 species:6239 "Caenorha... 152 1.5e-08 1
POMBASE|SPAC683.02c - symbol:SPAC683.02c "zf-CCHC type zi... 144 1.6e-08 1
UNIPROTKB|F1RF07 - symbol:ZCCHC9 "Uncharacterized protein... 147 2.3e-08 1
MGI|MGI:1916335 - symbol:Zcchc9 "zinc finger, CCHC domain... 147 2.4e-08 1
UNIPROTKB|F6V033 - symbol:ZCCHC9 "Uncharacterized protein... 145 4.2e-08 1
UNIPROTKB|F1ML79 - symbol:ZCCHC9 "Uncharacterized protein... 145 4.2e-08 1
RGD|1307450 - symbol:Zcchc9 "zinc finger, CCHC domain con... 143 7.5e-08 1
WB|WBGene00019537 - symbol:K08D12.3 species:6239 "Caenorh... 124 1.4e-07 1
UNIPROTKB|G4MRA3 - symbol:MGG_13778 "Zinc finger protein ... 138 1.5e-07 1
ZFIN|ZDB-GENE-031030-9 - symbol:zcchc9 "zinc finger, CCHC... 138 2.5e-07 1
UNIPROTKB|Q8N567 - symbol:ZCCHC9 "Zinc finger CCHC domain... 138 3.0e-07 1
SGD|S000001341 - symbol:AIR1 "Zinc knuckle protein" speci... 140 3.7e-07 1
ASPGD|ASPL0000040986 - symbol:AN9093 species:162425 "Emer... 130 1.7e-06 1
ASPGD|ASPL0000046912 - symbol:AN1944 species:162425 "Emer... 138 1.8e-06 1
ZFIN|ZDB-GENE-030102-2 - symbol:zcchc7 "zinc finger, CCHC... 137 2.1e-06 1
UNIPROTKB|P24736 - symbol:gag "Gag polyprotein" species:1... 130 9.4e-06 1
SGD|S000002334 - symbol:AIR2 "RNA-binding subunit of the ... 127 1.1e-05 1
TAIR|locus:2078526 - symbol:AT3G42860 species:3702 "Arabi... 126 1.7e-05 1
WB|WBGene00001601 - symbol:glh-4 species:6239 "Caenorhabd... 132 1.7e-05 1
UNIPROTKB|P20873 - symbol:gag "Gag polyprotein" species:1... 126 2.8e-05 1
UNIPROTKB|P12493 - symbol:gag "Gag polyprotein" species:1... 125 3.6e-05 1
UNIPROTKB|P12494 - symbol:gag "Gag polyprotein" species:1... 125 3.6e-05 1
UNIPROTKB|P35962 - symbol:gag "Gag polyprotein" species:3... 125 3.6e-05 1
UNIPROTKB|Q72497 - symbol:gag "Gag polyprotein" species:1... 125 3.6e-05 1
UNIPROTKB|P04594 - symbol:gag "Gag polyprotein" species:1... 125 3.7e-05 1
UNIPROTKB|P20889 - symbol:gag "Gag polyprotein" species:1... 124 4.7e-05 1
UNIPROTKB|Q70622 - symbol:gag "Gag polyprotein" species:8... 124 4.7e-05 1
UNIPROTKB|P03348 - symbol:gag "Gag polyprotein" species:1... 124 4.8e-05 1
UNIPROTKB|P03349 - symbol:gag "Gag polyprotein" species:1... 123 6.2e-05 1
UNIPROTKB|P24740 - symbol:gag-pol "Gag-Pol polyprotein" s... 128 6.3e-05 1
UNIPROTKB|P12498 - symbol:gag-pol "Gag-Pol polyprotein" s... 123 6.7e-05 1
UNIPROTKB|P18800 - symbol:gag "Gag polyprotein" species:1... 122 7.9e-05 1
UNIPROTKB|P04591 - symbol:gag "Gag polyprotein" species:1... 122 7.9e-05 1
UNIPROTKB|P04592 - symbol:gag "Gag polyprotein" species:1... 122 7.9e-05 1
UNIPROTKB|Q77YG1 - symbol:gag "Gag" species:11676 "Human ... 122 7.9e-05 1
UNIPROTKB|P12495 - symbol:gag "Gag polyprotein" species:1... 122 8.0e-05 1
UNIPROTKB|P05888 - symbol:gag "Gag polyprotein" species:1... 122 8.1e-05 1
UNIPROTKB|P03347 - symbol:gag "Gag polyprotein" species:1... 122 8.2e-05 1
TAIR|locus:2057295 - symbol:AT2G12880 species:3702 "Arabi... 99 8.7e-05 1
UNIPROTKB|P04593 - symbol:gag "Gag polyprotein" species:1... 121 0.00011 1
UNIPROTKB|Q65XV7 - symbol:P0016H04.11 "Os05g0111000 prote... 124 0.00011 1
UNIPROTKB|P05887 - symbol:gag "Gag polyprotein" species:1... 120 0.00013 1
UNIPROTKB|P20875 - symbol:gag-pol "Gag-Pol polyprotein" s... 124 0.00018 1
UNIPROTKB|G5E6N6 - symbol:G5E6N6 "Uncharacterized protein... 114 0.00018 1
UNIPROTKB|P12497 - symbol:gag-pol "Gag-Pol polyprotein" s... 123 0.00023 1
UNIPROTKB|P35963 - symbol:gag-pol "Gag-Pol polyprotein" s... 123 0.00023 1
UNIPROTKB|P04588 - symbol:gag-pol "Gag-Pol polyprotein" s... 123 0.00023 1
DICTYBASE|DDB_G0271832 - symbol:DDB_G0271832 "Zinc finger... 120 0.00024 1
UNIPROTKB|P05960 - symbol:gag-pol "Gag-Pol polyprotein" s... 118 0.00026 1
POMBASE|SPBP35G2.08c - symbol:air1 "zinc knuckle TRAMP co... 114 0.00030 1
UNIPROTKB|P20892 - symbol:gag-pol "Gag-Pol polyprotein" s... 122 0.00030 1
UNIPROTKB|P04589 - symbol:gag-pol "Gag-Pol polyprotein" s... 122 0.00030 1
UNIPROTKB|P03367 - symbol:gag-pol "Gag-Pol polyprotein" s... 122 0.00030 1
UNIPROTKB|P03369 - symbol:gag-pol "Gag-Pol polyprotein" s... 121 0.00039 1
UNIPROTKB|P18802 - symbol:gag-pol "Gag-Pol polyprotein" s... 120 0.00051 1
UNIPROTKB|P04585 - symbol:gag-pol "Gag-Pol polyprotein" s... 120 0.00051 1
UNIPROTKB|P12499 - symbol:gag-pol "Gag-Pol polyprotein" s... 120 0.00051 1
UNIPROTKB|P05961 - symbol:gag-pol "Gag-Pol polyprotein" s... 120 0.00051 1
UNIPROTKB|P03366 - symbol:gag-pol "Gag-Pol polyprotein" s... 120 0.00051 1
CGD|CAL0005378 - symbol:orf19.4844 species:5476 "Candida ... 113 0.00055 1
UNIPROTKB|P04587 - symbol:gag-pol "Gag-Pol polyprotein" s... 119 0.00066 1
WB|WBGene00043995 - symbol:F40F12.9 species:6239 "Caenorh... 90 0.00087 1
UNIPROTKB|F1PQG8 - symbol:ZCCHC3 "Uncharacterized protein... 109 0.00090 1
UNIPROTKB|J9P281 - symbol:ZCCHC3 "Uncharacterized protein... 109 0.00097 1
>TAIR|locus:2079859 [details] [associations]
symbol:AT3G43590 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 eggNOG:COG5082 Gene3D:4.10.60.10
SUPFAM:SSF57756 EMBL:AL391734 EMBL:AY099824 EMBL:BT002203
IPI:IPI00517919 RefSeq:NP_189945.1 UniGene:At.36254
ProteinModelPortal:Q9FYD1 SMR:Q9FYD1 IntAct:Q9FYD1 PRIDE:Q9FYD1
EnsemblPlants:AT3G43590.1 GeneID:823456 KEGG:ath:AT3G43590
TAIR:At3g43590 HOGENOM:HOG000071063 InParanoid:Q9FYD1 OMA:RECPNSS
PhylomeDB:Q9FYD1 ProtClustDB:CLSN2684404 ArrayExpress:Q9FYD1
Genevestigator:Q9FYD1 Uniprot:Q9FYD1
Length = 551
Score = 649 (233.5 bits), Expect = 4.2e-69, Sum P(2) = 4.2e-69
Identities = 109/178 (61%), Positives = 137/178 (76%)
Query: 137 KEEQKVETADNGDEGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNC 196
K E + + + DE T E + N+VL+KLLRG RYFDPPD GW +CY+CGE+GH + NC
Sbjct: 123 KGEGEDDEVERSDEPKTE-ETASNLVLKKLLRGARYFDPPDAGWVSCYSCGEQGHTSFNC 181
Query: 197 RSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCG 256
+ KR+KPCF+CGSLEHG +QCSK DC+ICKK GHRAKDCPDK+K+G + A VCL+CG
Sbjct: 182 PTPTKRRKPCFICGSLEHGAKQCSKGHDCYICKKTGHRAKDCPDKYKNGSKGA-VCLRCG 240
Query: 257 DSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
D GHDM C+ YS +DLK+VQCYIC+ FGHLCCV +++ VSC+RCGQLGH+GL
Sbjct: 241 DFGHDMILCKYEYSKEDLKDVQCYICKSFGHLCCVEPGNSLSWAVSCYRCGQLGHSGL 298
Score = 119 (46.9 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 40/140 (28%), Positives = 52/140 (37%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP---CFVCGSLEHGVRQCS--------KAQDCFICKKG 231
CY C + GH A +C K C CG H + C K C+ICK
Sbjct: 210 CYICKKTGHRAKDCPDKYKNGSKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQCYICKSF 269
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCV 291
GH C + S A C +CG GH +C Y + + R F
Sbjct: 270 GHLC--CVEPGNS-LSWAVSCYRCGQLGHSGLACGRHYEESNEND-SATPERLF------ 319
Query: 292 NISDAVPGEVSCFRCGQLGH 311
N +A C+RCG+ GH
Sbjct: 320 NSREAS----ECYRCGEEGH 335
Score = 115 (45.5 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 25/94 (26%), Positives = 42/94 (44%)
Query: 180 WQ-TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDC 238
W +CY CG+ GH + C + + + +A +C+ C + GH A++C
Sbjct: 283 WAVSCYRCGQLGHSGLACGRHYEESNEND--SATPERLFNSREASECYRCGEEGHFAREC 340
Query: 239 PDKHK----SGFQNAQVCLKCGDSGHDMFSCRNS 268
P+ G ++ +C +C SGH C NS
Sbjct: 341 PNSSSISTSHGRESQTLCYRCNGSGHFARECPNS 374
Score = 111 (44.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 33/119 (27%), Positives = 49/119 (41%)
Query: 183 CYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
CY C GH+ V +++ C+ CG L H C + + + P++
Sbjct: 263 CYICKSFGHLCCVEPGNSLSWAVSCYRCGQLGHSGLACGRHYE-----ESNENDSATPER 317
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL--KEVQ--CYICRCFGHLC--CVNIS 294
+ + A C +CG+ GH C NS S+ +E Q CY C GH C N S
Sbjct: 318 LFNS-REASECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECPNSS 375
Score = 87 (35.7 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 41/164 (25%), Positives = 61/164 (37%)
Query: 169 GPRYFDPPDR---GWQ--TCYNCGEEGHMAVNCRSAVKRKK----PCFVCGSLEHGV--- 216
G R D PD+ G + C CG+ GH + C+ ++ C++C S H
Sbjct: 217 GHRAKDCPDKYKNGSKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQCYICKSFGHLCCVE 276
Query: 217 --RQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
S A C+ C + GH C ++ +N + +F+ R +
Sbjct: 277 PGNSLSWAVSCYRCGQLGHSGLACGRHYEESNENDSA------TPERLFNSREAS----- 325
Query: 275 KEVQCYICRCFGHLC--CVNISDAVP--GEVS---CFRCGQLGH 311
+CY C GH C N S G S C+RC GH
Sbjct: 326 ---ECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGH 366
Score = 70 (29.7 bits), Expect = 4.2e-69, Sum P(2) = 4.2e-69
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 32 DDEEGNEDLSLKIVEKHMLMR 52
DD+E NEDLSLKI+EK + R
Sbjct: 36 DDDEANEDLSLKILEKALSRR 56
>TAIR|locus:2098164 [details] [associations]
symbol:AT3G43490 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001878 PROSITE:PS50158 SMART:SM00343 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0008270 GO:GO:0003676
eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:AL138644
IPI:IPI00541141 PIR:T47391 RefSeq:NP_189935.1 UniGene:At.53697
ProteinModelPortal:Q9M241 SMR:Q9M241 PaxDb:Q9M241 PRIDE:Q9M241
EnsemblPlants:AT3G43490.1 GeneID:823435 KEGG:ath:AT3G43490
TAIR:At3g43490 PhylomeDB:Q9M241 Genevestigator:Q9M241
Uniprot:Q9M241
Length = 260
Score = 242 (90.2 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 44/87 (50%), Positives = 56/87 (64%)
Query: 138 EEQKVETADNGDEGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCR 197
E+ VE G+E E + N V+ KLLRG RYFDP D GW TCY+CGE+ H+ V+C
Sbjct: 102 EDNMVEDVVRGEE--EDGETTSNSVMTKLLRGARYFDPLDAGWVTCYSCGEKDHITVSCP 159
Query: 198 SAVKRKKPCFVCGSLEHGVRQCSKAQD 224
+ +K CF+C SLEHG RQC+K D
Sbjct: 160 TLTNCRKSCFICASLEHGARQCTKVWD 186
Score = 57 (25.1 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 33 DEEGNEDLSLKIVEK 47
D+E NEDL LKI+EK
Sbjct: 23 DDEANEDLRLKILEK 37
>TAIR|locus:2183607 [details] [associations]
symbol:AT5G36240 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:AB026661
IPI:IPI00533303 RefSeq:NP_198473.1 UniGene:At.55159
ProteinModelPortal:Q9FG62 SMR:Q9FG62 PaxDb:Q9FG62 PRIDE:Q9FG62
EnsemblPlants:AT5G36240.1 GeneID:833621 KEGG:ath:AT5G36240
TAIR:At5g36240 eggNOG:NOG310171 HOGENOM:HOG000152454
InParanoid:Q9FG62 OMA:EGHFEHQ PhylomeDB:Q9FG62
ProtClustDB:CLSN2916402 Genevestigator:Q9FG62 Uniprot:Q9FG62
Length = 254
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 37/66 (56%), Positives = 46/66 (69%)
Query: 249 AQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQ 308
A+VCL+CG GHDM C+ YS +DLK ++CY+C GHLCC+ VSC+RCGQ
Sbjct: 25 AEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLCCIEPGHTQSWTVSCYRCGQ 84
Query: 309 LGHTGL 314
LGHTGL
Sbjct: 85 LGHTGL 90
Score = 113 (44.8 bits), Expect = 0.00024, P = 0.00024
Identities = 37/123 (30%), Positives = 50/123 (40%)
Query: 170 PRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKK----PCFVCGSLEH------GVRQC 219
PR+ D D + C CG GH C+ + C+VC SL H G Q
Sbjct: 18 PRHND--DEA-EVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLCCIEPGHTQ- 73
Query: 220 SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSL---DDLKE 276
S C+ C + GH C +H + C CG GH C NS+S+ +D E
Sbjct: 74 SWTVSCYRCGQLGHTGLAC-GRHYDDSVSPS-CFICGREGHFEHQCHNSFSVCFPEDSSE 131
Query: 277 VQC 279
+C
Sbjct: 132 DEC 134
>ZFIN|ZDB-GENE-030131-7782 [details] [associations]
symbol:cnbpb "CCHC-type zinc finger, nucleic acid
binding protein b" species:7955 "Danio rerio" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
ZFIN:ZDB-GENE-030131-7782 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00510000047065
InterPro:IPR025836 Pfam:PF14392 EMBL:CR855375 IPI:IPI00862287
Ensembl:ENSDART00000104520 Bgee:E7FCQ0 Uniprot:E7FCQ0
Length = 243
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 50/148 (33%), Positives = 69/148 (46%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVK-------RKKP--CFVCGSLEHGVRQCSKAQD-CF 226
D C+ CG GH NC +A + R K C+ CG H R C + +D C+
Sbjct: 82 DMSSNECFGCGRTGHWIKNCPNAGRGRGKGRGRGKDLFCYRCGEPGHVARDCERTEDACY 141
Query: 227 ICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFG 286
C +GGH ++DC + K + QVC CG +GH C D E +CY C FG
Sbjct: 142 NCGRGGHISRDCKEPKK---EREQVCYNCGKAGHMARDC------DHANEQKCYSCGGFG 192
Query: 287 HLCCVNISDAVPGEVSCFRCGQLGHTGL 314
H I +V C+RCG++GH +
Sbjct: 193 H-----IQKGCE-KVKCYRCGEIGHVAV 214
Score = 171 (65.3 bits), Expect = 4.6e-12, P = 4.6e-12
Identities = 40/115 (34%), Positives = 54/115 (46%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGH 233
+R CYNCG GH++ +C+ K R++ C+ CG H R C A Q C+ C GH
Sbjct: 134 ERTEDACYNCGRGGHISRDCKEPKKEREQVCYNCGKAGHMARDCDHANEQKCYSCGGFGH 193
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
K C +K K C +CG+ GH C + EV CY C GH+
Sbjct: 194 IQKGC-EKVK--------CYRCGEIGHVAVQCSKA------SEVNCYNCGKSGHV 233
Score = 156 (60.0 bits), Expect = 9.1e-10, P = 9.1e-10
Identities = 35/92 (38%), Positives = 46/92 (50%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GHMA +C A ++K C+ CG H + C K + C+ C + GH
Sbjct: 155 EPKKEREQVCYNCGKAGHMARDCDHANEQK--CYSCGGFGHIQKGCEKVK-CYRCGEIGH 211
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
A C K+ N C CG SGH C
Sbjct: 212 VAVQCS---KASEVN---CYNCGKSGHVAKEC 237
>ZFIN|ZDB-GENE-030131-5045 [details] [associations]
symbol:cnbpa "CCHC-type zinc finger, nucleic acid
binding protein a" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0060322 "head development" evidence=IMP]
[GO:0014029 "neural crest formation" evidence=IMP] [GO:0014036
"neural crest cell fate specification" evidence=IMP] [GO:0051216
"cartilage development" evidence=IMP] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
ZFIN:ZDB-GENE-030131-5045 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0003697 GO:GO:0051216 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 HOVERGEN:HBG000397 GO:GO:0060322 GO:GO:0014036
InterPro:IPR025836 Pfam:PF14392 EMBL:AY228240 IPI:IPI00481422
UniGene:Dr.31379 STRING:Q801Z9 InParanoid:Q801Z9
ArrayExpress:Q801Z9 Uniprot:Q801Z9
Length = 163
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 48/148 (32%), Positives = 68/148 (45%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVK-------RKKP--CFVCGSLEHGVRQCSKAQD-CF 226
D C+ CG GH NC +A + R K C+ CG H R C + +D C+
Sbjct: 2 DMSTSECFGCGRSGHWIKNCPNAGRGRGRGRGRGKDLFCYRCGEQGHIARDCEQTEDACY 61
Query: 227 ICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFG 286
C + GH ++DC + K + Q C CG +GH C D E +CY C FG
Sbjct: 62 NCHRSGHISRDCKEPKK---EREQCCYNCGKAGHVARDC------DHANEQKCYSCGGFG 112
Query: 287 HLCCVNISDAVPGEVSCFRCGQLGHTGL 314
H + D +V C+RCG++GH +
Sbjct: 113 HF--QKLCD----KVKCYRCGEIGHVAV 134
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 49/134 (36%), Positives = 63/134 (47%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-----KAQDCFICKKGGHRAKD 237
CY CGE+GH+A +C + C+ C H R C + Q C+ C K GH A+D
Sbjct: 40 CYRCGEQGHIARDCEQT---EDACYNCHRSGHISRDCKEPKKEREQCCYNCGKAGHVARD 96
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C H N Q C CG GH C D +V+CY C GH+ V S A
Sbjct: 97 CD--HA----NEQKCYSCGGFGHFQKLC------D---KVKCYRCGEIGHVA-VQCSKAT 140
Query: 298 PGEVSCFRCGQLGH 311
EV+C+ CG+ GH
Sbjct: 141 --EVNCYNCGKTGH 152
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 42/118 (35%), Positives = 54/118 (45%)
Query: 183 CYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDCP 239
CYNC GH++ +C+ K R++ C+ CG H R C A Q C+ C GH K C
Sbjct: 60 CYNCHRSGHISRDCKEPKKEREQCCYNCGKAGHVARDCDHANEQKCYSCGGFGHFQKLC- 118
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNIS 294
DK K C +CG+ GH C + EV CY C GHL C + S
Sbjct: 119 DKVK--------CYRCGEIGHVAVQCSKA------TEVNCYNCGKTGHLARDCSIEAS 162
Score = 146 (56.5 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 33/92 (35%), Positives = 46/92 (50%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C K + C+ C + GH
Sbjct: 75 EPKKEREQCCYNCGKAGHVARDCDHANEQK--CYSCGGFGHFQKLCDKVK-CYRCGEIGH 131
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
A C K+ N C CG +GH C
Sbjct: 132 VAVQCS---KATEVN---CYNCGKTGHLARDC 157
>UNIPROTKB|B4DP17 [details] [associations]
symbol:CNBP "cDNA FLJ61146, highly similar to Cellular
nucleic acid-binding protein" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 HOVERGEN:HBG000397 EMBL:AC108673 EMBL:AC135587
UniGene:Hs.518249 HGNC:HGNC:13164 ChiTaRS:CNBP EMBL:AK298154
IPI:IPI00977873 SMR:B4DP17 STRING:B4DP17 Ensembl:ENST00000500450
UCSC:uc011bku.2 Uniprot:B4DP17
Length = 160
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 49/139 (35%), Positives = 67/139 (48%)
Query: 178 RGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-----KAQDCFICKKGG 232
RG CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K G
Sbjct: 32 RGRDICYRCGESGHLAKDCDL---QEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPG 88
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVN 292
H A+DC H + Q C CG+ GH C +V+CY C GH+ +N
Sbjct: 89 HLARDCD--HA----DEQKCYSCGEFGHIQKDCT---------KVKCYRCGETGHVA-IN 132
Query: 293 ISDAVPGEVSCFRCGQLGH 311
S EV+C+RCG+ GH
Sbjct: 133 CSKT--SEVNCYRCGESGH 149
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 47/141 (33%), Positives = 63/141 (44%)
Query: 183 CYNCGEEGHMAVNC-----RSAVKRKKP---CFVCGSLEHGVRQCSKAQD-CFICKKGGH 233
C+ CG GH A C R R + C+ CG H + C +D C+ C +GGH
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRDICYRCGESGHLAKDCDLQEDACYNCGRGGH 65
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNI 293
AKDC + + + Q C CG GH C D E +CY C FGH+
Sbjct: 66 IAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCGEFGHIQ---- 112
Query: 294 SDAVPGEVSCFRCGQLGHTGL 314
D +V C+RCG+ GH +
Sbjct: 113 KDCT--KVKCYRCGETGHVAI 131
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 41/109 (37%), Positives = 55/109 (50%)
Query: 183 CYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDCP 239
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 57 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCT 116
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
K K C +CG++GH +C + EV CY C GHL
Sbjct: 117 -KVK--------CYRCGETGHVAINCSKT------SEVNCYRCGESGHL 150
Score = 160 (61.4 bits), Expect = 9.8e-12, P = 9.8e-12
Identities = 34/92 (36%), Positives = 50/92 (54%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 72 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 128
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
A +C K+ N C +CG+SGH C
Sbjct: 129 VAINCS---KTSEVN---CYRCGESGHLAREC 154
Score = 131 (51.2 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 30/94 (31%), Positives = 43/94 (45%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKSG----FQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
+ +CF C + GH A++CP G + +C +CG+SGH C DL+E
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRDICYRCGESGHLAKDC-------DLQED 55
Query: 278 QCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
CY C GH+ E C+ CG+ GH
Sbjct: 56 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGH 89
>MGI|MGI:88431 [details] [associations]
symbol:Cnbp "cellular nucleic acid binding protein"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
MGI:MGI:88431 GO:GO:0005783 GO:GO:0005829 GO:GO:0005634
GO:GO:0046872 GO:GO:0008284 GO:GO:0008270 GO:GO:0003727
GO:GO:0045944 GO:GO:0006351 GO:GO:0003697 eggNOG:COG5082
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000186262 KO:K09250
CTD:7555 HOVERGEN:HBG000397 ChiTaRS:CNBP EMBL:L12693 EMBL:Z11870
EMBL:X63866 EMBL:Z11871 EMBL:U20326 EMBL:AY176064 EMBL:AK075760
EMBL:AK078427 EMBL:BC058723 IPI:IPI00137229 IPI:IPI00330767
IPI:IPI00454151 PIR:I48297 PIR:I48298 PIR:I49259
RefSeq:NP_001103215.1 RefSeq:NP_038521.1 UniGene:Mm.290251
ProteinModelPortal:P53996 SMR:P53996 IntAct:P53996 STRING:P53996
PhosphoSite:P53996 PaxDb:P53996 PRIDE:P53996
Ensembl:ENSMUST00000032138 Ensembl:ENSMUST00000113619 GeneID:12785
KEGG:mmu:12785 InParanoid:P53996 OMA:CPNGQGG NextBio:282182
Bgee:P53996 CleanEx:MM_CNBP Genevestigator:P53996
GermOnline:ENSMUSG00000030057 Uniprot:P53996
Length = 178
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 47/134 (35%), Positives = 66/134 (49%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-----KAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ + C+ CG H + C + Q C+ C K GH A+D
Sbjct: 54 CYRCGESGHLAKDCD--LQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 111
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C H + Q C CG+ GH C +V+CY C GH+ +N S
Sbjct: 112 CD--HA----DEQKCYSCGEFGHIQKDCT---------KVKCYRCGETGHVA-INCSKT- 154
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 155 -SEVNCYRCGESGH 167
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 41/111 (36%), Positives = 56/111 (50%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKD 237
+ CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KD
Sbjct: 73 EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKD 132
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C K K C +CG++GH +C + EV CY C GHL
Sbjct: 133 CT-KVK--------CYRCGETGHVAINCSKT------SEVNCYRCGESGHL 168
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 38/111 (34%), Positives = 52/111 (46%)
Query: 206 CFVCGSLEHGVRQCSKAQD--CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMF 263
C+ CG H + C +D C+ C +GGH AKDC + + + Q C CG GH
Sbjct: 54 CYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLAR 110
Query: 264 SCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C D E +CY C FGH+ D +V C+RCG+ GH +
Sbjct: 111 DC------DHADEQKCYSCGEFGHIQ----KDCT--KVKCYRCGETGHVAI 149
Score = 160 (61.4 bits), Expect = 9.8e-12, P = 9.8e-12
Identities = 34/92 (36%), Positives = 50/92 (54%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 90 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 146
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
A +C K+ N C +CG+SGH C
Sbjct: 147 VAINCS---KTSEVN---CYRCGESGHLAREC 172
Score = 138 (53.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 41/135 (30%), Positives = 56/135 (41%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCG----SLEHGVRQCSKA-QD-CFICKKGGHRAK 236
C+ CG GH A C + R + G + + G + S + D C+ C + GH AK
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDA 296
DC Q + C CG GH C+ +E CY C GHL + A
Sbjct: 66 DCD------LQEDEACYNCGRGGHIAKDCKEPKRE---REQCCYNCGKPGHLAR-DCDHA 115
Query: 297 VPGEVSCFRCGQLGH 311
E C+ CG+ GH
Sbjct: 116 --DEQKCYSCGEFGH 128
>ASPGD|ASPL0000028407 [details] [associations]
symbol:AN5111 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0000747 "conjugation with
cellular fusion" evidence=IEA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 EMBL:BN001305 Gene3D:4.10.60.10
SUPFAM:SSF57756 OMA:FQFMSSS EnsemblFungi:CADANIAT00003095
Uniprot:C8VEX3
Length = 171
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 51/154 (33%), Positives = 72/154 (46%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA---------QD 224
D P +G TCYNCG +GH++ C A K K C+ CG++ H R+C +A Q+
Sbjct: 20 DCPKKGTPTCYNCGGQGHVSRECTVAPKEKS-CYRCGAVGHISRECPQAGENERPAGGQE 78
Query: 225 CFICKKGGHRAKDCPD--KHKSGFQNA-----QVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
C+ C + GH A++C + GF Q C CG GH C
Sbjct: 79 CYKCGRVGHIARNCSQGGSYGGGFGGGYGGRQQTCYSCGGFGHMARDCTQGQ-------- 130
Query: 278 QCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
+CY C GH+ ++A GE C++C Q GH
Sbjct: 131 KCYNCGETGHVSRDCPTEA-KGERVCYQCKQPGH 163
Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 45/144 (31%), Positives = 65/144 (45%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS---KAQDCFICKKGGHRA 235
G + C+NCGE H A +C K C+ CG H R+C+ K + C+ C GH +
Sbjct: 4 GGRVCFNCGEATHQARDCPK--KGTPTCYNCGGQGHVSRECTVAPKEKSCYRCGAVGHIS 61
Query: 236 KDCPDKHKSGFQ-NAQVCLKCGDSGHDMFSCRNSYSLDDL-------KEVQCYICRCFGH 287
++CP ++ Q C KCG GH +C S ++ CY C FGH
Sbjct: 62 RECPQAGENERPAGGQECYKCGRVGHIARNCSQGGSYGGGFGGGYGGRQQTCYSCGGFGH 121
Query: 288 LCCVNISDAVPGEVSCFRCGQLGH 311
+ D G+ C+ CG+ GH
Sbjct: 122 MA----RDCTQGQ-KCYNCGETGH 140
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 34/101 (33%), Positives = 49/101 (48%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVK-----------RKKPCFVCGSLEHGVRQCSKAQDCFI 227
G Q CY CG GH+A NC R++ C+ CG H R C++ Q C+
Sbjct: 75 GGQECYKCGRVGHIARNCSQGGSYGGGFGGGYGGRQQTCYSCGGFGHMARDCTQGQKCYN 134
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
C + GH ++DCP + K +VC +C GH +C N+
Sbjct: 135 CGETGHVSRDCPTEAKG----ERVCYQCKQPGHIQSACPNN 171
Score = 139 (54.0 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 39/134 (29%), Positives = 55/134 (41%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP-----CFVCGSLEHGVRQCSKA------------- 222
++CY CG GH++ C A + ++P C+ CG + H R CS+
Sbjct: 49 KSCYRCGAVGHISRECPQAGENERPAGGQECYKCGRVGHIARNCSQGGSYGGGFGGGYGG 108
Query: 223 --QDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCY 280
Q C+ C GH A+DC K C CG++GH C E CY
Sbjct: 109 RQQTCYSCGGFGHMARDCTQGQK--------CYNCGETGHVSRDCPTEAK----GERVCY 156
Query: 281 ICRCFGHL--CCVN 292
C+ GH+ C N
Sbjct: 157 QCKQPGHIQSACPN 170
>POMBASE|SPAC13D6.02c [details] [associations]
symbol:byr3 "zinc finger protein Byr3" species:4896
"Schizosaccharomyces pombe" [GO:0000747 "conjugation with cellular
fusion" evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IGI] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 PomBase:SPAC13D6.02c GO:GO:0005829 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0000747 EMBL:S45038 PIR:T37622 RefSeq:NP_593680.1
ProteinModelPortal:P36627 STRING:P36627 PRIDE:P36627
EnsemblFungi:SPAC13D6.02c.1 GeneID:2542829 KEGG:spo:SPAC13D6.02c
HOGENOM:HOG000186262 KO:K09250 OMA:FQFMSSS OrthoDB:EOG4K0TXR
NextBio:20803871 GO:GO:0031137 Uniprot:P36627
Length = 179
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 45/138 (32%), Positives = 59/138 (42%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD---CFICKKGGHRAKDCP 239
CYNCGE GH A C C+ C H +C++ Q C+ C GH +DCP
Sbjct: 19 CYNCGENGHQARECTKG----SICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCP 74
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLK------EVQCYICRCFGHLCCVNI 293
Q A+ C KCG GH CR + + + CY C +GH
Sbjct: 75 SSPNPR-QGAE-CYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGH----QA 128
Query: 294 SDAVPGEVSCFRCGQLGH 311
D G V C+ CG++GH
Sbjct: 129 RDCTMG-VKCYSCGKIGH 145
Score = 151 (58.2 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 32/101 (31%), Positives = 44/101 (43%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRS----------AVKRKKPCFVCGSLEHGVRQCSKAQD 224
P R CY CG GH+A +CR+ + C+ CGS H R C+
Sbjct: 77 PNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVK 136
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
C+ C K GHR+ +C + Q+C KC GH +C
Sbjct: 137 CYSCGKIGHRSFECQQA-----SDGQLCYKCNQPGHIAVNC 172
Score = 139 (54.0 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 41/133 (30%), Positives = 59/133 (44%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKK--PCFVCGSLEHGVRQC-SKAQ-------------D 224
+TCY CG GH+ +C S+ ++ C+ CG + H R C + Q +
Sbjct: 58 KTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMN 117
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRC 284
C+ C GH+A+DC G + C CG GH F C+ + S L CY C
Sbjct: 118 CYACGSYGHQARDCT----MGVK----CYSCGKIGHRSFECQQA-SDGQL----CYKCNQ 164
Query: 285 FGHLCCVNISDAV 297
GH+ VN + V
Sbjct: 165 PGHIA-VNCTSPV 176
>UNIPROTKB|E2RPD7 [details] [associations]
symbol:CNBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 GO:GO:0005783 GO:GO:0005829
GO:GO:0005634 GO:GO:0046872 GO:GO:0008284 GO:GO:0008270
GO:GO:0045944 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00510000047065 OMA:CPNGQGG EMBL:AAEX03012021
UniGene:Cfa.4499 ProteinModelPortal:E2RPD7 PRIDE:E2RPD7
Ensembl:ENSCAFT00000006937 NextBio:20852160 Uniprot:E2RPD7
Length = 179
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 47/134 (35%), Positives = 65/134 (48%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-----KAQDCFICKKGGHRAKD 237
CY CGE GH+A +C + + C+ CG H + C + Q C+ C K GH A+D
Sbjct: 54 CYRCGESGHLAKDC-DLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 112
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C H + Q C CG+ GH C +V+CY C GH+ +N S
Sbjct: 113 CD--HA----DEQKCYSCGEFGHIQKDCT---------KVKCYRCGETGHVA-INCSKT- 155
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 156 -SEVNCYRCGESGH 168
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 41/111 (36%), Positives = 56/111 (50%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKD 237
+ CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KD
Sbjct: 74 EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKD 133
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C K K C +CG++GH +C + EV CY C GHL
Sbjct: 134 CT-KVK--------CYRCGETGHVAINCSKT------SEVNCYRCGESGHL 169
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 38/112 (33%), Positives = 52/112 (46%)
Query: 206 CFVCGSLEHGVRQCSKAQD---CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDM 262
C+ CG H + C +D C+ C +GGH AKDC + + + Q C CG GH
Sbjct: 54 CYRCGESGHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLA 110
Query: 263 FSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C D E +CY C FGH+ D +V C+RCG+ GH +
Sbjct: 111 RDC------DHADEQKCYSCGEFGHIQ----KDCT--KVKCYRCGETGHVAI 150
Score = 160 (61.4 bits), Expect = 9.8e-12, P = 9.8e-12
Identities = 34/92 (36%), Positives = 50/92 (54%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 91 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 147
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
A +C K+ N C +CG+SGH C
Sbjct: 148 VAINCS---KTSEVN---CYRCGESGHLAREC 173
Score = 138 (53.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 41/135 (30%), Positives = 58/135 (42%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCG----SLEHGVRQCSKA-QD-CFICKKGGHRAK 236
C+ CG GH A C + R + G + + G + S + D C+ C + GH AK
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDA 296
DC D ++ + C CG GH C+ +E CY C GHL + A
Sbjct: 66 DC-DLQ----EDVEACYNCGRGGHIAKDCKEPKRE---REQCCYNCGKPGHLAR-DCDHA 116
Query: 297 VPGEVSCFRCGQLGH 311
E C+ CG+ GH
Sbjct: 117 --DEQKCYSCGEFGH 129
>UNIPROTKB|F8WFK2 [details] [associations]
symbol:Cnbp "Cellular nucleic acid-binding protein"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
RGD:621807 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00510000047065
IPI:IPI00201505 ProteinModelPortal:F8WFK2 SMR:F8WFK2
Ensembl:ENSRNOT00000013884 Uniprot:F8WFK2
Length = 179
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 47/134 (35%), Positives = 65/134 (48%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-----KAQDCFICKKGGHRAKD 237
CY CGE GH+A +C + + C+ CG H + C + Q C+ C K GH A+D
Sbjct: 54 CYRCGESGHLAKDC-DLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 112
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C H + Q C CG+ GH C +V+CY C GH+ +N S
Sbjct: 113 CD--HA----DEQKCYSCGEFGHIQKDCT---------KVKCYRCGETGHVA-INCSKT- 155
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 156 -SEVNCYRCGESGH 168
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 41/111 (36%), Positives = 56/111 (50%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKD 237
+ CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KD
Sbjct: 74 EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKD 133
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C K K C +CG++GH +C + EV CY C GHL
Sbjct: 134 CT-KVK--------CYRCGETGHVAINCSKT------SEVNCYRCGESGHL 169
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 38/112 (33%), Positives = 52/112 (46%)
Query: 206 CFVCGSLEHGVRQCSKAQD---CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDM 262
C+ CG H + C +D C+ C +GGH AKDC + + + Q C CG GH
Sbjct: 54 CYRCGESGHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLA 110
Query: 263 FSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C D E +CY C FGH+ D +V C+RCG+ GH +
Sbjct: 111 RDC------DHADEQKCYSCGEFGHIQ----KDCT--KVKCYRCGETGHVAI 150
Score = 160 (61.4 bits), Expect = 9.8e-12, P = 9.8e-12
Identities = 34/92 (36%), Positives = 50/92 (54%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 91 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 147
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
A +C K+ N C +CG+SGH C
Sbjct: 148 VAINCS---KTSEVN---CYRCGESGHLAREC 173
Score = 138 (53.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 41/135 (30%), Positives = 58/135 (42%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCG----SLEHGVRQCSKA-QD-CFICKKGGHRAK 236
C+ CG GH A C + R + G + + G + S + D C+ C + GH AK
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDA 296
DC D ++ + C CG GH C+ +E CY C GHL + A
Sbjct: 66 DC-DLQ----EDVEACYNCGRGGHIAKDCKEPKRE---REQCCYNCGKPGHLAR-DCDHA 116
Query: 297 VPGEVSCFRCGQLGH 311
E C+ CG+ GH
Sbjct: 117 --DEQKCYSCGEFGH 129
>UNIPROTKB|P62633 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0008284 "positive regulation of cell proliferation"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005783 "endoplasmic reticulum"
evidence=ISS] [GO:0005829 "cytosol" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0006695 "cholesterol biosynthetic process" evidence=TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=TAS] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 GO:GO:0005783 GO:GO:0005829
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008284
EMBL:CH471052 GO:GO:0008270 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 GO:GO:0006695 eggNOG:COG5082 Gene3D:4.10.60.10
SUPFAM:SSF57756 HOGENOM:HOG000186262 KO:K09250 CTD:7555
HOVERGEN:HBG000397 OrthoDB:EOG45HRZN EMBL:M28372 EMBL:U19765
EMBL:AY329622 EMBL:AK054592 EMBL:DQ092367 EMBL:DQ091187
EMBL:AK314380 EMBL:BT019613 EMBL:AC108673 EMBL:AC135587
EMBL:BC000288 EMBL:BC014911 EMBL:BC093058 IPI:IPI00430812
IPI:IPI00430813 IPI:IPI00430814 IPI:IPI00895911 IPI:IPI00967344
PIR:A32760 RefSeq:NP_001120665.1 RefSeq:NP_001120666.1
RefSeq:NP_001120668.1 RefSeq:NP_003409.1 UniGene:Hs.518249
ProteinModelPortal:P62633 SMR:P62633 IntAct:P62633 STRING:P62633
PhosphoSite:P62633 DMDM:50401852 PaxDb:P62633 PRIDE:P62633
DNASU:7555 Ensembl:ENST00000422453 Ensembl:ENST00000446936
Ensembl:ENST00000451728 Ensembl:ENST00000502976
Ensembl:ENST00000504813 GeneID:7555 KEGG:hsa:7555 UCSC:uc003elq.4
UCSC:uc003elr.4 GeneCards:GC03M128886 HGNC:HGNC:13164 MIM:116955
MIM:602668 neXtProt:NX_P62633 Orphanet:606 PharmGKB:PA37737
InParanoid:P62633 PhylomeDB:P62633 ChiTaRS:CNBP GenomeRNAi:7555
NextBio:29559 ArrayExpress:P62633 Bgee:P62633 CleanEx:HS_CNBP
Genevestigator:P62633 GermOnline:ENSG00000169714 Uniprot:P62633
Length = 177
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 47/134 (35%), Positives = 65/134 (48%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-----KAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 54 CYRCGESGHLAKDCDL---QEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 110
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C H + Q C CG+ GH C +V+CY C GH+ +N S
Sbjct: 111 CD--HA----DEQKCYSCGEFGHIQKDCT---------KVKCYRCGETGHVA-INCSKT- 153
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 154 -SEVNCYRCGESGH 166
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 41/109 (37%), Positives = 55/109 (50%)
Query: 183 CYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDCP 239
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 74 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCT 133
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
K K C +CG++GH +C + EV CY C GHL
Sbjct: 134 -KVK--------CYRCGETGHVAINCSKT------SEVNCYRCGESGHL 167
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 38/110 (34%), Positives = 52/110 (47%)
Query: 206 CFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFS 264
C+ CG H + C +D C+ C +GGH AKDC + + + Q C CG GH
Sbjct: 54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARD 110
Query: 265 CRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C D E +CY C FGH+ D +V C+RCG+ GH +
Sbjct: 111 C------DHADEQKCYSCGEFGHIQ----KDCT--KVKCYRCGETGHVAI 148
Score = 160 (61.4 bits), Expect = 9.8e-12, P = 9.8e-12
Identities = 34/92 (36%), Positives = 50/92 (54%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 89 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 145
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
A +C K+ N C +CG+SGH C
Sbjct: 146 VAINCS---KTSEVN---CYRCGESGHLAREC 171
Score = 130 (50.8 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 41/135 (30%), Positives = 56/135 (41%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCG----SLEHGVRQCSKA-QD-CFICKKGGHRAK 236
C+ CG GH A C + R + G + + G + S + D C+ C + GH AK
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDA 296
DC D + C CG GH C+ +E CY C GHL + A
Sbjct: 66 DC-DLQEDA------CYNCGRGGHIAKDCKEPKRE---REQCCYNCGKPGHLAR-DCDHA 114
Query: 297 VPGEVSCFRCGQLGH 311
E C+ CG+ GH
Sbjct: 115 --DEQKCYSCGEFGH 127
>UNIPROTKB|Q4R501 [details] [associations]
symbol:Q4R501 "Brain cDNA, clone: QnpA-14556, similar to
human zinc finger protein 9 (a cellular retroviral nucleicacid
binding protein) (ZNF9)," species:9541 "Macaca fascicularis"
[GO:0005634 "nucleus" evidence=ISS] [GO:0005783 "endoplasmic
reticulum" evidence=ISS] [GO:0005829 "cytosol" evidence=ISS]
[GO:0008284 "positive regulation of cell proliferation"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
GO:GO:0005783 GO:GO:0005829 GO:GO:0005634 GO:GO:0046872
GO:GO:0008284 GO:GO:0008270 GO:GO:0045944 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOVERGEN:HBG000397 EMBL:AB169743
EMBL:AB174174 ProteinModelPortal:Q4R501 SMR:Q4R501 PRIDE:Q4R501
Uniprot:Q4R501
Length = 177
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 47/134 (35%), Positives = 65/134 (48%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-----KAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 54 CYRCGESGHLAKDCDL---QEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 110
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C H + Q C CG+ GH C +V+CY C GH+ +N S
Sbjct: 111 CD--HA----DEQKCYSCGEFGHIQKDCT---------KVKCYRCGETGHVA-INCSKT- 153
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 154 -SEVNCYRCGESGH 166
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 41/109 (37%), Positives = 55/109 (50%)
Query: 183 CYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDCP 239
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 74 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCT 133
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
K K C +CG++GH +C + EV CY C GHL
Sbjct: 134 -KVK--------CYRCGETGHVAINCSKT------SEVNCYRCGESGHL 167
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 38/110 (34%), Positives = 52/110 (47%)
Query: 206 CFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFS 264
C+ CG H + C +D C+ C +GGH AKDC + + + Q C CG GH
Sbjct: 54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARD 110
Query: 265 CRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C D E +CY C FGH+ D +V C+RCG+ GH +
Sbjct: 111 C------DHADEQKCYSCGEFGHIQ----KDCT--KVKCYRCGETGHVAI 148
Score = 160 (61.4 bits), Expect = 9.8e-12, P = 9.8e-12
Identities = 34/92 (36%), Positives = 50/92 (54%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 89 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 145
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
A +C K+ N C +CG+SGH C
Sbjct: 146 VAINCS---KTSEVN---CYRCGESGHLAREC 171
Score = 130 (50.8 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 41/135 (30%), Positives = 56/135 (41%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCG----SLEHGVRQCSKA-QD-CFICKKGGHRAK 236
C+ CG GH A C + R + G + + G + S + D C+ C + GH AK
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDA 296
DC D + C CG GH C+ +E CY C GHL + A
Sbjct: 66 DC-DLQEDA------CYNCGRGGHIAKDCKEPKRE---REQCCYNCGKPGHLAR-DCDHA 114
Query: 297 VPGEVSCFRCGQLGH 311
E C+ CG+ GH
Sbjct: 115 --DEQKCYSCGEFGH 127
>UNIPROTKB|Q5R5R5 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005783 "endoplasmic reticulum" evidence=ISS] [GO:0005829
"cytosol" evidence=ISS] [GO:0008284 "positive regulation of cell
proliferation" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 GO:GO:0005783 GO:GO:0005829 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008284 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 Gene3D:4.10.60.10 SUPFAM:SSF57756
KO:K09250 CTD:7555 GeneTree:ENSGT00510000047065 HOVERGEN:HBG000397
OMA:CPNGQGG EMBL:CR860791 RefSeq:NP_001126703.1 UniGene:Pab.18652
ProteinModelPortal:Q5R5R5 SMR:Q5R5R5 PRIDE:Q5R5R5
Ensembl:ENSPPYT00000015613 GeneID:100173703 KEGG:pon:100173703
InParanoid:Q5R5R5 Uniprot:Q5R5R5
Length = 177
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 47/134 (35%), Positives = 65/134 (48%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-----KAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 54 CYRCGESGHLAKDCDL---QEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 110
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C H + Q C CG+ GH C +V+CY C GH+ +N S
Sbjct: 111 CD--HA----DEQKCYSCGEFGHIQKDCT---------KVKCYRCGETGHVA-INCSKT- 153
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 154 -SEVNCYRCGESGH 166
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 41/109 (37%), Positives = 55/109 (50%)
Query: 183 CYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDCP 239
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 74 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCT 133
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
K K C +CG++GH +C + EV CY C GHL
Sbjct: 134 -KVK--------CYRCGETGHVAINCSKT------SEVNCYRCGESGHL 167
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 38/110 (34%), Positives = 52/110 (47%)
Query: 206 CFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFS 264
C+ CG H + C +D C+ C +GGH AKDC + + + Q C CG GH
Sbjct: 54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARD 110
Query: 265 CRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C D E +CY C FGH+ D +V C+RCG+ GH +
Sbjct: 111 C------DHADEQKCYSCGEFGHIQ----KDCT--KVKCYRCGETGHVAI 148
Score = 160 (61.4 bits), Expect = 9.8e-12, P = 9.8e-12
Identities = 34/92 (36%), Positives = 50/92 (54%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 89 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 145
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
A +C K+ N C +CG+SGH C
Sbjct: 146 VAINCS---KTSEVN---CYRCGESGHLAREC 171
Score = 130 (50.8 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 41/135 (30%), Positives = 56/135 (41%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCG----SLEHGVRQCSKA-QD-CFICKKGGHRAK 236
C+ CG GH A C + R + G + + G + S + D C+ C + GH AK
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDA 296
DC D + C CG GH C+ +E CY C GHL + A
Sbjct: 66 DC-DLQEDA------CYNCGRGGHIAKDCKEPKRE---REQCCYNCGKPGHLAR-DCDHA 114
Query: 297 VPGEVSCFRCGQLGH 311
E C+ CG+ GH
Sbjct: 115 --DEQKCYSCGEFGH 127
>RGD|621807 [details] [associations]
symbol:Cnbp "CCHC-type zinc finger, nucleic acid binding protein"
species:10116 "Rattus norvegicus" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO;ISS] [GO:0005783
"endoplasmic reticulum" evidence=ISO;ISS] [GO:0005829 "cytosol"
evidence=ISO;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=ISO;ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 RGD:621807 GO:GO:0005783
GO:GO:0005829 GO:GO:0005634 GO:GO:0046872 GO:GO:0008284
GO:GO:0008270 GO:GO:0003727 GO:GO:0045944 GO:GO:0006351
GO:GO:0003697 eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 CTD:7555 HOVERGEN:HBG000397
OrthoDB:EOG45HRZN EMBL:D45254 EMBL:AF242550 EMBL:AY329624
EMBL:AB158421 EMBL:AB158422 EMBL:BC062225 IPI:IPI00201505
PIR:JC2512 RefSeq:NP_072120.1 UniGene:Rn.6187
ProteinModelPortal:P62634 SMR:P62634 STRING:P62634
PhosphoSite:P62634 PRIDE:P62634 GeneID:64530 KEGG:rno:64530
InParanoid:P62634 NextBio:613366 ArrayExpress:P62634
Genevestigator:P62634 GermOnline:ENSRNOG00000010239 Uniprot:P62634
Length = 177
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 47/134 (35%), Positives = 65/134 (48%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-----KAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 54 CYRCGESGHLAKDCDL---QEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 110
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C H + Q C CG+ GH C +V+CY C GH+ +N S
Sbjct: 111 CD--HA----DEQKCYSCGEFGHIQKDCT---------KVKCYRCGETGHVA-INCSKT- 153
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 154 -SEVNCYRCGESGH 166
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 41/109 (37%), Positives = 55/109 (50%)
Query: 183 CYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDCP 239
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 74 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCT 133
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
K K C +CG++GH +C + EV CY C GHL
Sbjct: 134 -KVK--------CYRCGETGHVAINCSKT------SEVNCYRCGESGHL 167
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 38/110 (34%), Positives = 52/110 (47%)
Query: 206 CFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFS 264
C+ CG H + C +D C+ C +GGH AKDC + + + Q C CG GH
Sbjct: 54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARD 110
Query: 265 CRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C D E +CY C FGH+ D +V C+RCG+ GH +
Sbjct: 111 C------DHADEQKCYSCGEFGHIQ----KDCT--KVKCYRCGETGHVAI 148
Score = 160 (61.4 bits), Expect = 9.8e-12, P = 9.8e-12
Identities = 34/92 (36%), Positives = 50/92 (54%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 89 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 145
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
A +C K+ N C +CG+SGH C
Sbjct: 146 VAINCS---KTSEVN---CYRCGESGHLAREC 171
Score = 130 (50.8 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 41/135 (30%), Positives = 56/135 (41%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCG----SLEHGVRQCSKA-QD-CFICKKGGHRAK 236
C+ CG GH A C + R + G + + G + S + D C+ C + GH AK
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDA 296
DC D + C CG GH C+ +E CY C GHL + A
Sbjct: 66 DC-DLQEDA------CYNCGRGGHIAKDCKEPKRE---REQCCYNCGKPGHLAR-DCDHA 114
Query: 297 VPGEVSCFRCGQLGH 311
E C+ CG+ GH
Sbjct: 115 --DEQKCYSCGEFGH 127
>UNIPROTKB|P62634 [details] [associations]
symbol:Cnbp "Cellular nucleic acid-binding protein"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISS] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 RGD:621807 GO:GO:0005783 GO:GO:0005829 GO:GO:0005634
GO:GO:0046872 GO:GO:0008284 GO:GO:0008270 GO:GO:0003727
GO:GO:0045944 GO:GO:0006351 GO:GO:0003697 eggNOG:COG5082
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000186262 KO:K09250
CTD:7555 HOVERGEN:HBG000397 OrthoDB:EOG45HRZN EMBL:D45254
EMBL:AF242550 EMBL:AY329624 EMBL:AB158421 EMBL:AB158422
EMBL:BC062225 IPI:IPI00201505 PIR:JC2512 RefSeq:NP_072120.1
UniGene:Rn.6187 ProteinModelPortal:P62634 SMR:P62634 STRING:P62634
PhosphoSite:P62634 PRIDE:P62634 GeneID:64530 KEGG:rno:64530
InParanoid:P62634 NextBio:613366 ArrayExpress:P62634
Genevestigator:P62634 GermOnline:ENSRNOG00000010239 Uniprot:P62634
Length = 177
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 47/134 (35%), Positives = 65/134 (48%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-----KAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 54 CYRCGESGHLAKDCDL---QEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 110
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C H + Q C CG+ GH C +V+CY C GH+ +N S
Sbjct: 111 CD--HA----DEQKCYSCGEFGHIQKDCT---------KVKCYRCGETGHVA-INCSKT- 153
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 154 -SEVNCYRCGESGH 166
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 41/109 (37%), Positives = 55/109 (50%)
Query: 183 CYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDCP 239
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 74 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCT 133
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
K K C +CG++GH +C + EV CY C GHL
Sbjct: 134 -KVK--------CYRCGETGHVAINCSKT------SEVNCYRCGESGHL 167
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 38/110 (34%), Positives = 52/110 (47%)
Query: 206 CFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFS 264
C+ CG H + C +D C+ C +GGH AKDC + + + Q C CG GH
Sbjct: 54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARD 110
Query: 265 CRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C D E +CY C FGH+ D +V C+RCG+ GH +
Sbjct: 111 C------DHADEQKCYSCGEFGHIQ----KDCT--KVKCYRCGETGHVAI 148
Score = 160 (61.4 bits), Expect = 9.8e-12, P = 9.8e-12
Identities = 34/92 (36%), Positives = 50/92 (54%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 89 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 145
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
A +C K+ N C +CG+SGH C
Sbjct: 146 VAINCS---KTSEVN---CYRCGESGHLAREC 171
Score = 130 (50.8 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 41/135 (30%), Positives = 56/135 (41%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCG----SLEHGVRQCSKA-QD-CFICKKGGHRAK 236
C+ CG GH A C + R + G + + G + S + D C+ C + GH AK
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDA 296
DC D + C CG GH C+ +E CY C GHL + A
Sbjct: 66 DC-DLQEDA------CYNCGRGGHIAKDCKEPKRE---REQCCYNCGKPGHLAR-DCDHA 114
Query: 297 VPGEVSCFRCGQLGH 311
E C+ CG+ GH
Sbjct: 115 --DEQKCYSCGEFGH 127
>UNIPROTKB|Q3T0Q6 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9913 "Bos taurus" [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 GO:GO:0005783 GO:GO:0005829
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008284
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 eggNOG:COG5082
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000186262 KO:K09250
OMA:FQFMSSS EMBL:BC102298 IPI:IPI00697831 RefSeq:NP_001029396.1
UniGene:Bt.9541 ProteinModelPortal:Q3T0Q6 STRING:Q3T0Q6
PRIDE:Q3T0Q6 Ensembl:ENSBTAT00000016130 GeneID:504831
KEGG:bta:504831 CTD:7555 GeneTree:ENSGT00510000047065
HOVERGEN:HBG000397 InParanoid:Q3T0Q6 OrthoDB:EOG45HRZN
NextBio:20866851 Uniprot:Q3T0Q6
Length = 170
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 47/134 (35%), Positives = 65/134 (48%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-----KAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 47 CYRCGESGHLAKDCDL---QEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 103
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C H + Q C CG+ GH C +V+CY C GH+ +N S
Sbjct: 104 CD--HA----DEQKCYSCGEFGHIQKDCT---------KVKCYRCGETGHVA-INCSKT- 146
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 147 -SEVNCYRCGESGH 159
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 49/151 (32%), Positives = 64/151 (42%)
Query: 183 CYNCGEEGHMAVNC----------RSA------VKRKKP--CFVCGSLEHGVRQCSKAQD 224
C+ CG GH A C RS V P C+ CG H + C +D
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 65
Query: 225 -CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C +GGH AKDC + + + Q C CG GH C D E +CY C
Sbjct: 66 ACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCG 116
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
FGH+ D +V C+RCG+ GH +
Sbjct: 117 EFGHIQ----KDCT--KVKCYRCGETGHVAI 141
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 41/109 (37%), Positives = 55/109 (50%)
Query: 183 CYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDCP 239
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 67 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCT 126
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
K K C +CG++GH +C + EV CY C GHL
Sbjct: 127 -KVK--------CYRCGETGHVAINCSKT------SEVNCYRCGESGHL 160
Score = 160 (61.4 bits), Expect = 9.8e-12, P = 9.8e-12
Identities = 34/92 (36%), Positives = 50/92 (54%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 82 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 138
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
A +C K+ N C +CG+SGH C
Sbjct: 139 VAINCS---KTSEVN---CYRCGESGHLAREC 164
Score = 118 (46.6 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 32/104 (30%), Positives = 44/104 (42%)
Query: 222 AQDCFICKKGGHRAKDCPD---------KHKSGFQNAQ-----VCLKCGDSGHDMFSCRN 267
+ +CF C + GH A++CP GFQ +C +CG+SGH C
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC-- 60
Query: 268 SYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
DL+E CY C GH+ E C+ CG+ GH
Sbjct: 61 -----DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGH 99
>SGD|S000005199 [details] [associations]
symbol:GIS2 "Translational activator for mRNAs with internal
ribosome entry sites" species:4932 "Saccharomyces cerevisiae"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0042788 "polysomal ribosome" evidence=IPI] [GO:0045182
"translation regulator activity" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 SGD:S000005199 GO:GO:0046872
GO:GO:0008270 GO:GO:0003729 EMBL:BK006947 GO:GO:0045182
GO:GO:0042788 GO:GO:0003697 eggNOG:COG5082 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0045727 EMBL:X96722 HOGENOM:HOG000186262
KO:K09250 GeneTree:ENSGT00510000047065 EMBL:Z71531 EMBL:AY558002
PIR:S63228 RefSeq:NP_014144.1 ProteinModelPortal:P53849 SMR:P53849
DIP:DIP-2669N IntAct:P53849 MINT:MINT-2732013 STRING:P53849
PaxDb:P53849 PeptideAtlas:P53849 EnsemblFungi:YNL255C GeneID:855466
KEGG:sce:YNL255C CYGD:YNL255c OMA:QCYNCGE OrthoDB:EOG4SJ8Q6
NextBio:979403 Genevestigator:P53849 GermOnline:YNL255C
Uniprot:P53849
Length = 153
Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 42/132 (31%), Positives = 60/132 (45%)
Query: 183 CYNCGEEGHMAVNCRSA-VKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
CYNC + GH+ +C K C+ CG H +C+ Q CF C + GH +++CP+
Sbjct: 25 CYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECT-VQRCFNCNQTGHISRECPEP 83
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVPG 299
K+ + C KCG H C + LK CY C GH+ C N D +
Sbjct: 84 KKTSRFSKVSCYKCGGPNHMAKDCMKEDGISGLK---CYTCGQAGHMSRDCQN--DRL-- 136
Query: 300 EVSCFRCGQLGH 311
C+ C + GH
Sbjct: 137 ---CYNCNETGH 145
Score = 158 (60.7 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 38/138 (27%), Positives = 58/138 (42%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-----KAQDCFICKKGGHRA 235
+ CY CG+ GH+A +C S ++ C+ C H C+ + + C+ C + GH
Sbjct: 4 KACYVCGKIGHLAEDCDS----ERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVR 59
Query: 236 KDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNI 293
+C Q C C +GH C +V CY C H+ C+
Sbjct: 60 SEC---------TVQRCFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMK- 109
Query: 294 SDAVPGEVSCFRCGQLGH 311
D + G + C+ CGQ GH
Sbjct: 110 EDGISG-LKCYTCGQAGH 126
Score = 146 (56.5 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 39/117 (33%), Positives = 52/117 (44%)
Query: 180 WQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ--------DCFICKKG 231
++ CYNCGE GH+ C V+R CF C H R+C + + C+ C
Sbjct: 46 FKQCYNCGETGHVRSEC--TVQR---CFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGP 100
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
H AKDC + G + C CG +GH C+N D L CY C GH+
Sbjct: 101 NHMAKDC--MKEDGISGLK-CYTCGQAGHMSRDCQN----DRL----CYNCNETGHI 146
Score = 137 (53.3 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 28/94 (29%), Positives = 42/94 (44%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKR----KKPCFVCGSLEHGVRQCSKAQD-----CFICKKG 231
Q C+NC + GH++ C K K C+ CG H + C K C+ C +
Sbjct: 65 QRCFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISGLKCYTCGQA 124
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
GH ++DC QN ++C C ++GH C
Sbjct: 125 GHMSRDC--------QNDRLCYNCNETGHISKDC 150
Score = 130 (50.8 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 23/60 (38%), Positives = 31/60 (51%)
Query: 182 TCYNCGEEGHMAVNC--RSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCP 239
+CY CG HMA +C + K C+ CG H R C + C+ C + GH +KDCP
Sbjct: 93 SCYKCGGPNHMAKDCMKEDGISGLK-CYTCGQAGHMSRDCQNDRLCYNCNETGHISKDCP 151
>UNIPROTKB|F1N8C2 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0005783
GO:GO:0005829 GO:GO:0005634 GO:GO:0046872 GO:GO:0008284
GO:GO:0008270 GO:GO:0045944 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 OMA:FQFMSSS GeneTree:ENSGT00510000047065
IPI:IPI00582111 EMBL:AADN02013931 Ensembl:ENSGALT00000036274
ArrayExpress:F1N8C2 Uniprot:F1N8C2
Length = 171
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 47/152 (30%), Positives = 65/152 (42%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKK-----------------P--CFVCGSLEHGVRQCSKAQ 223
C+ CG GH A C + + R + P C+ CG H + C +
Sbjct: 6 CFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDLQE 65
Query: 224 D-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYIC 282
D C+ C +GGH AKDC + + + Q C CG GH C D E +CY C
Sbjct: 66 DACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSC 116
Query: 283 RCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
FGH+ D +V C+RCG+ GH +
Sbjct: 117 GEFGHIQ----KDCT--KVKCYRCGETGHVAI 142
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 41/109 (37%), Positives = 55/109 (50%)
Query: 183 CYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDCP 239
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 68 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCT 127
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
K K C +CG++GH +C + EV CY C GHL
Sbjct: 128 -KVK--------CYRCGETGHVAINCSKT------SEVNCYRCGESGHL 161
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 41/119 (34%), Positives = 58/119 (48%)
Query: 206 CFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFS 264
C+ CG H + C +D C+ C +GGH AKDC + + + Q C CG GH
Sbjct: 48 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARD 104
Query: 265 CRNS-----YSLD-------DLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
C ++ YS D +V+CY C GH+ +N S EV+C+RCG+ GH
Sbjct: 105 CDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVA-INCSKT--SEVNCYRCGESGH 160
Score = 160 (61.4 bits), Expect = 9.8e-12, P = 9.8e-12
Identities = 34/92 (36%), Positives = 50/92 (54%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 83 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 139
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
A +C K+ N C +CG+SGH C
Sbjct: 140 VAINCS---KTSEVN---CYRCGESGHLAREC 165
Score = 120 (47.3 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 32/105 (30%), Positives = 47/105 (44%)
Query: 222 AQDCFICKKGGHRAKDCP----------DKHKSGFQNAQ-----VCLKCGDSGHDMFSCR 266
+ +CF C + GH A++CP + ++GFQ +C +CG+SGH C
Sbjct: 3 SNECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDC- 61
Query: 267 NSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
DL+E CY C GH+ E C+ CG+ GH
Sbjct: 62 ------DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGH 100
>UNIPROTKB|O42395 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9031 "Gallus gallus" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0005783
GO:GO:0005829 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008284 GO:GO:0008270 GO:GO:0045944 GO:GO:0006351
eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 CTD:7555 HOVERGEN:HBG000397
OrthoDB:EOG45HRZN EMBL:AF004942 IPI:IPI00582111 RefSeq:NP_990238.1
UniGene:Gga.3333 ProteinModelPortal:O42395 STRING:O42395
GeneID:395731 KEGG:gga:395731 InParanoid:O42395 NextBio:20815799
ArrayExpress:O42395 Uniprot:O42395
Length = 172
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 47/153 (30%), Positives = 65/153 (42%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKK-----------------P--CFVCGSLEHGVRQCSKAQ 223
C+ CG GH A C + + R + P C+ CG H + C +
Sbjct: 6 CFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDLQE 65
Query: 224 D--CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYI 281
D C+ C +GGH AKDC + + + Q C CG GH C D E +CY
Sbjct: 66 DKACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYS 116
Query: 282 CRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C FGH+ D +V C+RCG+ GH +
Sbjct: 117 CGEFGHIQ----KDCT--KVKCYRCGETGHVAI 143
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 41/111 (36%), Positives = 56/111 (50%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKD 237
+ CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KD
Sbjct: 67 KACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKD 126
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C K K C +CG++GH +C + EV CY C GHL
Sbjct: 127 CT-KVK--------CYRCGETGHVAINCSKT------SEVNCYRCGESGHL 162
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 41/120 (34%), Positives = 58/120 (48%)
Query: 206 CFVCGSLEHGVRQCSKAQD--CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMF 263
C+ CG H + C +D C+ C +GGH AKDC + + + Q C CG GH
Sbjct: 48 CYRCGESGHLAKDCDLQEDKACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLAR 104
Query: 264 SCRNS-----YSLD-------DLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
C ++ YS D +V+CY C GH+ +N S EV+C+RCG+ GH
Sbjct: 105 DCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVA-INCSKT--SEVNCYRCGESGH 161
Score = 160 (61.4 bits), Expect = 9.8e-12, P = 9.8e-12
Identities = 34/92 (36%), Positives = 50/92 (54%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 84 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 140
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
A +C K+ N C +CG+SGH C
Sbjct: 141 VAINCS---KTSEVN---CYRCGESGHLAREC 166
Score = 113 (44.8 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 32/106 (30%), Positives = 48/106 (45%)
Query: 222 AQDCFICKKGGHRAKDCP----------DKHKSGFQNAQ-----VCLKCGDSGHDMFSCR 266
+ +CF C + GH A++CP + ++GFQ +C +CG+SGH C
Sbjct: 3 SNECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDC- 61
Query: 267 NSYSLDDLKEVQ-CYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
DL+E + CY C GH+ E C+ CG+ GH
Sbjct: 62 ------DLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGH 101
>UNIPROTKB|G3MZ41 [details] [associations]
symbol:ZCCHC13 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00510000047065 OMA:SSKECFK EMBL:DAAA02072583
Ensembl:ENSBTAT00000001124 Uniprot:G3MZ41
Length = 175
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 44/134 (32%), Positives = 63/134 (47%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGHRAKD 237
CY CG+ GH A +C C+ CG H + C++ + C+ C + GH A+D
Sbjct: 52 CYRCGKFGHYAKDCDLL---DDICYNCGKSGHIAKDCAEPKREGERCCYTCGRPGHLARD 108
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C D+ Q + C CG SGH C +V+CY C GH+ +N
Sbjct: 109 C-DR-----QEERKCYSCGKSGHIQKYCT---------QVKCYRCGEIGHVA-INCRKM- 151
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 152 -NEVNCYRCGESGH 164
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 39/110 (35%), Positives = 54/110 (49%)
Query: 183 CYNCGEEGHMAVNCRSAVKR-KKPCFVCGSLEHGVRQCSKAQD--CFICKKGGHRAKDCP 239
CYNCG+ GH+A +C + ++ C+ CG H R C + ++ C+ C K GH K C
Sbjct: 72 CYNCGKSGHIAKDCAEPKREGERCCYTCGRPGHLARDCDRQEERKCYSCGKSGHIQKYC- 130
Query: 240 DKHKSGFQNAQV-CLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
QV C +CG+ GH +CR + EV CY C GHL
Sbjct: 131 ---------TQVKCYRCGEIGHVAINCRK------MNEVNCYRCGESGHL 165
Score = 147 (56.8 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 32/92 (34%), Positives = 47/92 (51%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P G + CY CG GH+A +C +RK C+ CG H + C++ + C+ C + GH
Sbjct: 87 EPKREGERCCYTCGRPGHLARDCDRQEERK--CYSCGKSGHIQKYCTQVK-CYRCGEIGH 143
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
A +C K N C +CG+SGH C
Sbjct: 144 VAINC---RKMNEVN---CYRCGESGHLTREC 169
Score = 129 (50.5 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 45/133 (33%), Positives = 52/133 (39%)
Query: 183 CYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCSKAQ---DCFICKKGGHRAKDC 238
C+ CG GH A C + R + G HG QCS C+ C K GH AKDC
Sbjct: 10 CFKCGRVGHWAPACSKGGGARGRGARGRG---HGA-QCSSTTLPVICYRCGKFGHYAKDC 65
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVP 298
D +C CG SGH C E CY C GHL D
Sbjct: 66 -DLLDD------ICYNCGKSGHIAKDCAEPKREG---ERCCYTCGRPGHLA--RDCDRQE 113
Query: 299 GEVSCFRCGQLGH 311
E C+ CG+ GH
Sbjct: 114 -ERKCYSCGKSGH 125
Score = 115 (45.5 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--CFICKKGGHRAKDCP 239
CY+CG+ GH+ C + VK C+ CG + H C K + C+ C + GH ++CP
Sbjct: 117 CYSCGKSGHIQKYC-TQVK----CYRCGEIGHVAINCRKMNEVNCYRCGESGHLTRECP 170
Score = 111 (44.1 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 34/112 (30%), Positives = 45/112 (40%)
Query: 204 KPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK-HKSGFQNAQ---VCLKCGDSG 259
K CF CG + H CSK GG R + + H + + +C +CG G
Sbjct: 8 KECFKCGRVGHWAPACSKG--------GGARGRGARGRGHGAQCSSTTLPVICYRCGKFG 59
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
H C LDD+ CY C GH+ GE C+ CG+ GH
Sbjct: 60 HYAKDCD---LLDDI----CYNCGKSGHIAKDCAEPKREGERCCYTCGRPGH 104
>UNIPROTKB|F1NI84 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0005783
GO:GO:0005829 GO:GO:0005634 GO:GO:0046872 GO:GO:0008284
GO:GO:0008270 GO:GO:0045944 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GeneTree:ENSGT00510000047065 EMBL:AADN02013931
IPI:IPI00819060 Ensembl:ENSGALT00000008010 ArrayExpress:F1NI84
Uniprot:F1NI84
Length = 105
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 38/110 (34%), Positives = 52/110 (47%)
Query: 206 CFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFS 264
C+ CG H + C +D C+ C +GGH AKDC + + + Q C CG GH
Sbjct: 9 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARD 65
Query: 265 CRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C D E +CY C FGH+ D +V C+RCG+ GH +
Sbjct: 66 C------DHADEQKCYSCGEFGHIQ----KDCT--KVKCYRCGETGHVAI 103
Score = 158 (60.7 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 33/86 (38%), Positives = 46/86 (53%)
Query: 183 CYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDCP 239
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 29 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCT 88
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSC 265
K K C +CG++GH +C
Sbjct: 89 -KVK--------CYRCGETGHVAINC 105
Score = 149 (57.5 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 37/111 (33%), Positives = 51/111 (45%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-----KAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 9 CYRCGESGHLAKDCDL---QEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 65
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C H + Q C CG+ GH C +V+CY C GH+
Sbjct: 66 CD--HA----DEQKCYSCGEFGHIQKDCT---------KVKCYRCGETGHV 101
Score = 134 (52.2 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 44 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 100
Query: 234 RAKDC 238
A +C
Sbjct: 101 VAINC 105
Score = 91 (37.1 bits), Expect = 0.00067, P = 0.00067
Identities = 21/61 (34%), Positives = 28/61 (45%)
Query: 251 VCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLG 310
+C +CG+SGH C DL+E CY C GH+ E C+ CG+ G
Sbjct: 8 ICYRCGESGHLAKDC-------DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPG 60
Query: 311 H 311
H
Sbjct: 61 H 61
>UNIPROTKB|Q8WW36 [details] [associations]
symbol:ZCCHC13 "Zinc finger CCHC domain-containing protein
13" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 eggNOG:COG5082
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000186262
HOVERGEN:HBG000397 EMBL:BC021176 IPI:IPI00397484 RefSeq:NP_976048.1
UniGene:Hs.157231 ProteinModelPortal:Q8WW36 SMR:Q8WW36
IntAct:Q8WW36 MINT:MINT-2879587 PhosphoSite:Q8WW36 DMDM:71152962
PRIDE:Q8WW36 DNASU:389874 Ensembl:ENST00000339534 GeneID:389874
KEGG:hsa:389874 UCSC:uc004ebs.4 CTD:389874 GeneCards:GC0XP073524
HGNC:HGNC:31749 HPA:HPA003382 neXtProt:NX_Q8WW36
PharmGKB:PA134926925 InParanoid:Q8WW36 OMA:SSKECFK PhylomeDB:Q8WW36
GenomeRNAi:389874 NextBio:103180 Bgee:Q8WW36 CleanEx:HS_ZCCHC13
Genevestigator:Q8WW36 GermOnline:ENSG00000187969 Uniprot:Q8WW36
Length = 166
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 36/87 (41%), Positives = 47/87 (54%)
Query: 183 CYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCS--KAQDCFICKKGGHRAKDCP 239
CYNCG GH+A +C+ + R++ C+ CG L H R C K Q C+ C K GH KDC
Sbjct: 67 CYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSCGKLGHIQKDC- 125
Query: 240 DKHKSGFQNAQV-CLKCGDSGHDMFSC 265
AQV C +CG+ GH +C
Sbjct: 126 ---------AQVKCYRCGEIGHVAINC 143
Score = 160 (61.4 bits), Expect = 9.8e-12, P = 9.8e-12
Identities = 36/110 (32%), Positives = 50/110 (45%)
Query: 206 CFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFS 264
C+ CG + C + C+ C + GH AKDC D + + Q C CG GH
Sbjct: 47 CYCCGESGRNAKNCVLLGNICYNCGRSGHIAKDCKDPKR---ERRQHCYTCGRLGHLARD 103
Query: 265 CRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C D KE +CY C GH+ D +V C+RCG++GH +
Sbjct: 104 C------DRQKEQKCYSCGKLGHIQ----KDCA--QVKCYRCGEIGHVAI 141
Score = 123 (48.4 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
DP Q CY CG GH+A +C ++K C+ CG L H + C++ + C+ C + GH
Sbjct: 82 DPKRERRQHCYTCGRLGHLARDCDRQKEQK--CYSCGKLGHIQKDCAQVK-CYRCGEIGH 138
Query: 234 RAKDCPDKHKSG 245
A +C K + G
Sbjct: 139 VAINC-SKARPG 149
Score = 122 (48.0 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 38/132 (28%), Positives = 51/132 (38%)
Query: 184 YNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCSK---AQDCFICKKGGHRAKDCP 239
+ CG GH A C R ++ G G QC + C+ C + G AK+C
Sbjct: 7 FACGHSGHWARGCPRGGAGGRRG----GGHGRG-SQCGSTTLSYTCYCCGESGRNAKNC- 60
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPG 299
+C CG SGH C++ + CY C GHL D
Sbjct: 61 ------VLLGNICYNCGRSGHIAKDCKDPKRE---RRQHCYTCGRLGHLA--RDCDRQK- 108
Query: 300 EVSCFRCGQLGH 311
E C+ CG+LGH
Sbjct: 109 EQKCYSCGKLGH 120
>UNIPROTKB|J9NRQ2 [details] [associations]
symbol:ZCCHC13 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GeneTree:ENSGT00510000047065 EMBL:AAEX03026520
Ensembl:ENSCAFT00000049751 OMA:EEQKCYS Uniprot:J9NRQ2
Length = 146
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 47/152 (30%), Positives = 65/152 (42%)
Query: 183 CYNCGEEGHMAVNC--------RSAVKRKK--PC---------FVCGSLEHGVRQCSKAQ 223
C+ CG GH A C R A R + PC + CG H + C +
Sbjct: 6 CFRCGRSGHWARGCPRVGGSRGRGARGRGRGSPCSSTNLPDICYRCGKSGHHAKNCDLLE 65
Query: 224 D-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYIC 282
D C+ C + GH AKDC + + + Q C CG GH C D +E +CY C
Sbjct: 66 DICYNCGRSGHIAKDCIEPKR---EREQCCYTCGRPGHLARDC------DRQEEQKCYSC 116
Query: 283 RCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
+GH+ D +V C+RCG+ GH +
Sbjct: 117 GEYGHIQ----KDCT--QVKCYRCGETGHVAI 142
Score = 154 (59.3 bits), Expect = 5.1e-11, P = 5.1e-11
Identities = 31/87 (35%), Positives = 46/87 (52%)
Query: 183 CYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKAQD--CFICKKGGHRAKDCP 239
CYNCG GH+A +C + R++ C+ CG H R C + ++ C+ C + GH KDC
Sbjct: 68 CYNCGRSGHIAKDCIEPKREREQCCYTCGRPGHLARDCDRQEEQKCYSCGEYGHIQKDC- 126
Query: 240 DKHKSGFQNAQV-CLKCGDSGHDMFSC 265
QV C +CG++GH +C
Sbjct: 127 ---------TQVKCYRCGETGHVAINC 144
Score = 118 (46.6 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CY CG GH+A +C ++K C+ CG H + C++ + C+ C + GH
Sbjct: 83 EPKREREQCCYTCGRPGHLARDCDRQEEQK--CYSCGEYGHIQKDCTQVK-CYRCGETGH 139
Query: 234 RAKDC 238
A +C
Sbjct: 140 VAINC 144
Score = 115 (45.5 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 34/112 (30%), Positives = 44/112 (39%)
Query: 204 KPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHK----SGFQNAQVCLKCGDSG 259
K CF CG H R C + GG R + + + S +C +CG SG
Sbjct: 4 KECFRCGRSGHWARGCPRV--------GGSRGRGARGRGRGSPCSSTNLPDICYRCGKSG 55
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
H +C DL E CY C GH+ I E C+ CG+ GH
Sbjct: 56 HHAKNC-------DLLEDICYNCGRSGHIAKDCIEPKREREQCCYTCGRPGH 100
>CGD|CAL0002417 [details] [associations]
symbol:GIS2 species:5476 "Candida albicans" [GO:0070417
"cellular response to cold" evidence=IMP] [GO:0003676 "nucleic acid
binding" evidence=NAS] [GO:0071470 "cellular response to osmotic
stress" evidence=IMP] [GO:0035690 "cellular response to drug"
evidence=IMP] [GO:0042788 "polysomal ribosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000747 "conjugation with cellular fusion"
evidence=IEA] [GO:0031137 "regulation of conjugation with cellular
fusion" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0045182
"translation regulator activity" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 CGD:CAL0002417
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 GO:GO:0035690
EMBL:AACQ01000100 EMBL:AACQ01000097 GO:GO:0071470 GO:GO:0070417
eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 RefSeq:XP_714599.1
RefSeq:XP_714730.1 ProteinModelPortal:Q59YJ9 STRING:Q59YJ9
GeneID:3643638 GeneID:3643744 KEGG:cal:CaO19.10692
KEGG:cal:CaO19.3182 Uniprot:Q59YJ9
Length = 175
Score = 162 (62.1 bits), Expect = 5.6e-12, P = 5.6e-12
Identities = 43/147 (29%), Positives = 66/147 (44%)
Query: 183 CYNCGEEGHMAVNCRSAVKRK-KPCFVCGSLEHGVRQC-SKAQD--CFICKKGGHRAKDC 238
CYNC + GH + +C + K C+ CG + H +C ++AQ C+ C + GH +K+C
Sbjct: 29 CYNCHKPGHESNDCPDPKQNTAKQCYSCGDVGHIQTECPNQAQGAKCYNCGQFGHISKNC 88
Query: 239 ---PD--------KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGH 287
P K SG + C KCG H C+ + V+CY C GH
Sbjct: 89 DSAPSSTNNAPSFKRPSGRASGTTCYKCGGPNHFARDCQAN-------TVKCYACGKVGH 141
Query: 288 L---CCVNISDAVPGEVSCFRCGQLGH 311
+ C + + +C+ CG+ GH
Sbjct: 142 ISKDCHSSAGGSNFSAKTCYNCGKSGH 168
Score = 156 (60.0 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 35/99 (35%), Positives = 45/99 (45%)
Query: 183 CYNCGEEGHMAVNCRSAVKR-------KKP--------CFVCGSLEHGVRQC-SKAQDCF 226
CYNCG+ GH++ NC SA K+P C+ CG H R C + C+
Sbjct: 75 CYNCGQFGHISKNCDSAPSSTNNAPSFKRPSGRASGTTCYKCGGPNHFARDCQANTVKCY 134
Query: 227 ICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
C K GH +KDC +A+ C CG SGH C
Sbjct: 135 ACGKVGHISKDCHSSAGGSNFSAKTCYNCGKSGHISKEC 173
Score = 153 (58.9 bits), Expect = 6.6e-11, P = 6.6e-11
Identities = 41/143 (28%), Positives = 66/143 (46%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRA 235
+TCY CGE GH+A +C+ + ++ C+ C H C + A+ C+ C GH
Sbjct: 7 RTCYKCGEVGHVADDCQ---QEERLCYNCHKPGHESNDCPDPKQNTAKQCYSCGDVGHIQ 63
Query: 236 KDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS-YSLDDLKEVQCYICRCFGHLC--CVN 292
+CP++ Q A+ C CG GH +C ++ S ++ + R G C C
Sbjct: 64 TECPNQA----QGAK-CYNCGQFGHISKNCDSAPSSTNNAPSFKRPSGRASGTTCYKCGG 118
Query: 293 IS----DAVPGEVSCFRCGQLGH 311
+ D V C+ CG++GH
Sbjct: 119 PNHFARDCQANTVKCYACGKVGH 141
Score = 126 (49.4 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 35/134 (26%), Positives = 48/134 (35%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--------- 224
DP + CY+CG+ GH+ C + + K C+ CG H + C A
Sbjct: 44 DPKQNTAKQCYSCGDVGHIQTECPNQAQGAK-CYNCGQFGHISKNCDSAPSSTNNAPSFK 102
Query: 225 ----------CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
C+ C H A+DC N C CG GH C +S +
Sbjct: 103 RPSGRASGTTCYKCGGPNHFARDCQ-------ANTVKCYACGKVGHISKDCHSSAGGSNF 155
Query: 275 KEVQCYICRCFGHL 288
CY C GH+
Sbjct: 156 SAKTCYNCGKSGHI 169
>UNIPROTKB|Q59YJ9 [details] [associations]
symbol:GIS2 "Putative uncharacterized protein GIS2"
species:237561 "Candida albicans SC5314" [GO:0003676 "nucleic acid
binding" evidence=NAS] [GO:0035690 "cellular response to drug"
evidence=IMP] [GO:0070417 "cellular response to cold" evidence=IMP]
[GO:0071470 "cellular response to osmotic stress" evidence=IMP]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
CGD:CAL0002417 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0035690 EMBL:AACQ01000100 EMBL:AACQ01000097 GO:GO:0071470
GO:GO:0070417 eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 RefSeq:XP_714599.1
RefSeq:XP_714730.1 ProteinModelPortal:Q59YJ9 STRING:Q59YJ9
GeneID:3643638 GeneID:3643744 KEGG:cal:CaO19.10692
KEGG:cal:CaO19.3182 Uniprot:Q59YJ9
Length = 175
Score = 162 (62.1 bits), Expect = 5.6e-12, P = 5.6e-12
Identities = 43/147 (29%), Positives = 66/147 (44%)
Query: 183 CYNCGEEGHMAVNCRSAVKRK-KPCFVCGSLEHGVRQC-SKAQD--CFICKKGGHRAKDC 238
CYNC + GH + +C + K C+ CG + H +C ++AQ C+ C + GH +K+C
Sbjct: 29 CYNCHKPGHESNDCPDPKQNTAKQCYSCGDVGHIQTECPNQAQGAKCYNCGQFGHISKNC 88
Query: 239 ---PD--------KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGH 287
P K SG + C KCG H C+ + V+CY C GH
Sbjct: 89 DSAPSSTNNAPSFKRPSGRASGTTCYKCGGPNHFARDCQAN-------TVKCYACGKVGH 141
Query: 288 L---CCVNISDAVPGEVSCFRCGQLGH 311
+ C + + +C+ CG+ GH
Sbjct: 142 ISKDCHSSAGGSNFSAKTCYNCGKSGH 168
Score = 156 (60.0 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 35/99 (35%), Positives = 45/99 (45%)
Query: 183 CYNCGEEGHMAVNCRSAVKR-------KKP--------CFVCGSLEHGVRQC-SKAQDCF 226
CYNCG+ GH++ NC SA K+P C+ CG H R C + C+
Sbjct: 75 CYNCGQFGHISKNCDSAPSSTNNAPSFKRPSGRASGTTCYKCGGPNHFARDCQANTVKCY 134
Query: 227 ICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
C K GH +KDC +A+ C CG SGH C
Sbjct: 135 ACGKVGHISKDCHSSAGGSNFSAKTCYNCGKSGHISKEC 173
Score = 153 (58.9 bits), Expect = 6.6e-11, P = 6.6e-11
Identities = 41/143 (28%), Positives = 66/143 (46%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRA 235
+TCY CGE GH+A +C+ + ++ C+ C H C + A+ C+ C GH
Sbjct: 7 RTCYKCGEVGHVADDCQ---QEERLCYNCHKPGHESNDCPDPKQNTAKQCYSCGDVGHIQ 63
Query: 236 KDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS-YSLDDLKEVQCYICRCFGHLC--CVN 292
+CP++ Q A+ C CG GH +C ++ S ++ + R G C C
Sbjct: 64 TECPNQA----QGAK-CYNCGQFGHISKNCDSAPSSTNNAPSFKRPSGRASGTTCYKCGG 118
Query: 293 IS----DAVPGEVSCFRCGQLGH 311
+ D V C+ CG++GH
Sbjct: 119 PNHFARDCQANTVKCYACGKVGH 141
Score = 126 (49.4 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 35/134 (26%), Positives = 48/134 (35%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--------- 224
DP + CY+CG+ GH+ C + + K C+ CG H + C A
Sbjct: 44 DPKQNTAKQCYSCGDVGHIQTECPNQAQGAK-CYNCGQFGHISKNCDSAPSSTNNAPSFK 102
Query: 225 ----------CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
C+ C H A+DC N C CG GH C +S +
Sbjct: 103 RPSGRASGTTCYKCGGPNHFARDCQ-------ANTVKCYACGKVGHISKDCHSSAGGSNF 155
Query: 275 KEVQCYICRCFGHL 288
CY C GH+
Sbjct: 156 SAKTCYNCGKSGHI 169
>TAIR|locus:2156647 [details] [associations]
symbol:AT5G52380 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 EMBL:CP002688 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 EMBL:AB019226 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR025836 Pfam:PF14392 EMBL:BT025034 IPI:IPI00544651
RefSeq:NP_200051.1 UniGene:At.29618 ProteinModelPortal:Q9FHC2
SMR:Q9FHC2 PRIDE:Q9FHC2 EnsemblPlants:AT5G52380.1 GeneID:835314
KEGG:ath:AT5G52380 TAIR:At5g52380 InParanoid:Q9FHC2 OMA:KLCYNCG
PhylomeDB:Q9FHC2 ProtClustDB:CLSN2686088 Genevestigator:Q9FHC2
Uniprot:Q9FHC2
Length = 268
Score = 172 (65.6 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 37/123 (30%), Positives = 59/123 (47%)
Query: 200 VKRKKPCFVCGSLEHGVRQCSKAQD------CFICKKGGHRAKDCPDKHKSGFQNAQVCL 253
+K + CF+C S H + C + + C C++ GH K+CP+K+ + ++C
Sbjct: 70 MKPGEGCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEK-KLCY 128
Query: 254 KCGDSGHDMFSCRNSYSLDD--LKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQ 308
CGD+GH + C Y ++D K C+IC+ GH+ C N P C CG
Sbjct: 129 NCGDTGHSLSHC--PYPMEDGGTKFASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGS 186
Query: 309 LGH 311
+ H
Sbjct: 187 VAH 189
Score = 140 (54.3 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 34/111 (30%), Positives = 49/111 (44%)
Query: 176 PDRG-WQT---CYNCGEEGHMAVNC---RSAVKRKKPCFVCGSLEHGVRQC--------S 220
P++ W+ C C GH NC + KK C+ CG H + C +
Sbjct: 90 PEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGT 149
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLK-CGDSGHDMFSCRNSYS 270
K CFICK GH +K+CP+ +K G C K CG H + C + ++
Sbjct: 150 KFASCFICKGQGHISKNCPE-NKHGIYPMGGCCKVCGSVAHLVKDCPDKFN 199
>DICTYBASE|DDB_G0293328 [details] [associations]
symbol:DDB_G0293328 "Cellular nucleic acid-binding
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 dictyBase:DDB_G0293328
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 eggNOG:COG5082
Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:AAFI02000201
RefSeq:XP_629203.1 ProteinModelPortal:Q54BY8 STRING:Q54BY8
EnsemblProtists:DDB0191881 GeneID:8629162 KEGG:ddi:DDB_G0293328
InParanoid:Q54BY8 OMA:CKEVGHI ProtClustDB:PTZ00368 Uniprot:Q54BY8
Length = 131
Score = 154 (59.3 bits), Expect = 5.1e-11, P = 5.1e-11
Identities = 33/104 (31%), Positives = 49/104 (47%)
Query: 176 PDRGWQTCYNCGEEGHMAVNC----RSAVKRKKP--CFVCGSLEHGVRQCSKAQD--CFI 227
P+ G + CY C GH++ C + ++K P C+ C H R C + +D C+
Sbjct: 26 PEAGDRACYVCNVVGHLSRECPQNPQPTFEKKDPIKCYQCNGFGHFARDCRRGRDNKCYN 85
Query: 228 CKKGGHRAKDCPDKHKSGF-QNAQVCLKCGDSGHDMFSCRNSYS 270
C GH +KDCP G ++A C KC GH +C + S
Sbjct: 86 CGGLGHISKDCPSPSTRGQGRDAAKCYKCNQPGHIAKACPENQS 129
Score = 146 (56.5 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 35/121 (28%), Positives = 54/121 (44%)
Query: 202 RKKPCFVCGSLEHGVRQCSK---AQD--CFICKKGGHRAKDCPDKHKSGFQNAQV--CLK 254
++K C+ C + H R C K A D C++C GH +++CP + F+ C +
Sbjct: 5 KEKSCYKCKEVGHISRNCPKNPEAGDRACYVCNVVGHLSRECPQNPQPTFEKKDPIKCYQ 64
Query: 255 CGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVPGE--VSCFRCGQLG 310
C GH CR ++ +CY C GH+ C + S G C++C Q G
Sbjct: 65 CNGFGHFARDCRRG------RDNKCYNCGGLGHISKDCPSPSTRGQGRDAAKCYKCNQPG 118
Query: 311 H 311
H
Sbjct: 119 H 119
Score = 137 (53.3 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 35/120 (29%), Positives = 56/120 (46%)
Query: 181 QTCYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCSK-------AQD---CFICK 229
++CY C E GH++ NC ++ + C+VC + H R+C + +D C+ C
Sbjct: 7 KSCYKCKEVGHISRNCPKNPEAGDRACYVCNVVGHLSRECPQNPQPTFEKKDPIKCYQCN 66
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV-QCYICRCFGHL 288
GH A+DC + G N C CG GH C + + ++ +CY C GH+
Sbjct: 67 GFGHFARDC----RRGRDNK--CYNCGGLGHISKDCPSPSTRGQGRDAAKCYKCNQPGHI 120
>FB|FBgn0034802 [details] [associations]
symbol:CG3800 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=ISS;NAS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
EMBL:AE013599 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756 KO:K09250
GeneTree:ENSGT00510000047065 OMA:QCYNCGE EMBL:AY075371
EMBL:AY118596 RefSeq:NP_001188992.1 RefSeq:NP_611739.1
UniGene:Dm.5513 ProteinModelPortal:Q8T8R1 SMR:Q8T8R1
MINT:MINT-943666 STRING:Q8T8R1 PaxDb:Q8T8R1 PRIDE:Q8T8R1
EnsemblMetazoa:FBtr0071994 EnsemblMetazoa:FBtr0303464 GeneID:37646
KEGG:dme:Dmel_CG3800 UCSC:CG3800-RA FlyBase:FBgn0034802
InParanoid:Q8T8R1 OrthoDB:EOG40RXZ0 PhylomeDB:Q8T8R1
GenomeRNAi:37646 NextBio:804714 Bgee:Q8T8R1 Uniprot:Q8T8R1
Length = 165
Score = 153 (58.9 bits), Expect = 6.6e-11, P = 6.6e-11
Identities = 35/114 (30%), Positives = 53/114 (46%)
Query: 178 RGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--CFICKKGGHRA 235
R + CY C + GH A C +R C+ C + H + C++A + C+ C K GH
Sbjct: 52 RNREKCYKCNQFGHFARACPEEAER---CYRCNGIGHISKDCTQADNPTCYRCNKTGHWV 108
Query: 236 KDCPDK-HKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
++CP+ ++ G N C KC +GH +C + CY C GHL
Sbjct: 109 RNCPEAVNERGPTNVS-CYKCNRTGHISKNCPETSKT-------CYGCGKSGHL 154
Score = 143 (55.4 bits), Expect = 9.8e-10, P = 9.8e-10
Identities = 39/129 (30%), Positives = 56/129 (43%)
Query: 187 GEEGHMAVNCRSAVKR-KKPCFVCGSLEHGVRQC-SKAQDCFICKKGGHRAKDCPDKHKS 244
G G M N ++R ++ C+ C H R C +A+ C+ C GH +KDC
Sbjct: 37 GGGGGMRGNDGGGMRRNREKCYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQADNP 96
Query: 245 GFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVS-- 302
C +C +GH + +C + + V CY C GH IS P E S
Sbjct: 97 ------TCYRCNKTGHWVRNCPEAVNERGPTNVSCYKCNRTGH-----ISKNCP-ETSKT 144
Query: 303 CFRCGQLGH 311
C+ CG+ GH
Sbjct: 145 CYGCGKSGH 153
Score = 128 (50.1 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 29/93 (31%), Positives = 42/93 (45%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--------CFICKKGG 232
+ CY C GH++ +C A C+ C H VR C +A + C+ C + G
Sbjct: 75 ERCYRCNGIGHISKDCTQA--DNPTCYRCNKTGHWVRNCPEAVNERGPTNVSCYKCNRTG 132
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
H +K+CP+ K+ C CG SGH C
Sbjct: 133 HISKNCPETSKT-------CYGCGKSGHLRREC 158
Score = 125 (49.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 41/142 (28%), Positives = 59/142 (41%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG---VR------QCSKAQDCFICKKGG 232
TCY C GH A +C S P V G G +R + C+ C + G
Sbjct: 6 TCYKCNRPGHFARDC-SLGGGGGPGGVGGGGGGGGGGMRGNDGGGMRRNREKCYKCNQFG 64
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL---C 289
H A+ CP++ A+ C +C GH C + D+ CY C GH C
Sbjct: 65 HFARACPEE-------AERCYRCNGIGHISKDCTQA---DN---PTCYRCNKTGHWVRNC 111
Query: 290 CVNISDAVPGEVSCFRCGQLGH 311
+++ P VSC++C + GH
Sbjct: 112 PEAVNERGPTNVSCYKCNRTGH 133
Score = 123 (48.4 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSK-AQDCFICKKGGHRAK 236
TCY C + GH NC AV + P C+ C H + C + ++ C+ C K GH +
Sbjct: 97 TCYRCNKTGHWVRNCPEAVNERGPTNVSCYKCNRTGHISKNCPETSKTCYGCGKSGHLRR 156
Query: 237 DCPDK 241
+C +K
Sbjct: 157 ECDEK 161
>TAIR|locus:2135139 [details] [associations]
symbol:CSDP1 "cold shock domain protein 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0003690 "double-stranded DNA
binding" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0009414
"response to water deprivation" evidence=IEP] [GO:0009651 "response
to salt stress" evidence=IEP] [GO:0010501 "RNA secondary structure
unwinding" evidence=IDA] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] [GO:0009631 "cold acclimation" evidence=IGI]
[GO:0009165 "nucleotide biosynthetic process" evidence=RCA]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 Prosite:PS00352 GO:GO:0005634
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0009651 GO:GO:0009414 GO:GO:0008270
GO:GO:0009631 GO:GO:0003723 EMBL:AL161588 GO:GO:0003690
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:AL022373
HOGENOM:HOG000186262 KO:K09250 InterPro:IPR019844 GO:GO:0010501
EMBL:AK226815 IPI:IPI00525206 PIR:T05494 RefSeq:NP_195326.1
UniGene:At.23073 HSSP:P15277 ProteinModelPortal:O65639 SMR:O65639
STRING:O65639 PaxDb:O65639 PRIDE:O65639 EnsemblPlants:AT4G36020.1
GeneID:829758 KEGG:ath:AT4G36020 TAIR:At4g36020 eggNOG:COG1278
InParanoid:O65639 OMA:GRACYNC PhylomeDB:O65639
ProtClustDB:CLSN2685328 Genevestigator:O65639 GO:GO:0032508
Uniprot:O65639
Length = 299
Score = 155 (59.6 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 44/146 (30%), Positives = 61/146 (41%)
Query: 178 RGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKD 237
RG + CYNCG+ GH A +C SA + G+ + G C+ C GH A+D
Sbjct: 129 RGGEGCYNCGDTGHFARDCTSAGNGDQR----GATKGG------NDGCYTCGDVGHVARD 178
Query: 238 CPDKHK-SGFQNAQV------CLKCGDSGHDMFSCRNSYSLDDLKEV-----QCYICRCF 285
C K +G Q V C CGD GH C + +++ CY C
Sbjct: 179 CTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGV 238
Query: 286 GHLCCVNISDAVPGEVSCFRCGQLGH 311
GH+ + P C++CG GH
Sbjct: 239 GHIARDCATKRQPSR-GCYQCGGSGH 263
Score = 153 (58.9 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 34/96 (35%), Positives = 42/96 (43%)
Query: 183 CYNCGEEGHMAVNC---------RSAVKRKKPCFVCGSLEHGVRQCS-KAQD---CFICK 229
CY CG+ GH A +C RS C+ CG + H R C+ K Q C+ C
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCG 259
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
GH A+DC + G N C KCG GH C
Sbjct: 260 GSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 131 (51.2 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 40/137 (29%), Positives = 55/137 (40%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
CY CG+ GH+A +C +K V + G + C+ C GH A+DC K
Sbjct: 166 CYTCGDVGHVARDCT----QKS---VGNGDQRGAVKGGN-DGCYTCGDVGHFARDCTQKV 217
Query: 243 -----KSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNIS 294
+SG + C CG GH C CY C GHL C S
Sbjct: 218 AAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQ----PSRGCYQCGGSGHLARDCDQRGS 273
Query: 295 DAVPGEVSCFRCGQLGH 311
+ +C++CG+ GH
Sbjct: 274 GGGGNDNACYKCGKEGH 290
Score = 118 (46.6 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK------AQD--CFICKK 230
G TCY+CG GH+A +C + + + C+ CG H R C + D C+ C K
Sbjct: 228 GSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGK 287
Query: 231 GGHRAKDC 238
GH A++C
Sbjct: 288 EGHFAREC 295
Score = 116 (45.9 bits), Expect = 0.00016, P = 0.00016
Identities = 37/121 (30%), Positives = 48/121 (39%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDC 238
G CYNCGE GH++ K C + G G R+ + C+ C GH A+DC
Sbjct: 98 GGSGCYNCGELGHIS----------KDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDC 147
Query: 239 PDKHKSGFQNAQV-----CLKCGDSGHDMFSC-RNSYSLDDLK-EVQ-----CYICRCFG 286
+ A C CGD GH C + S D + V+ CY C G
Sbjct: 148 TSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVG 207
Query: 287 H 287
H
Sbjct: 208 H 208
>UNIPROTKB|G4N4A8 [details] [associations]
symbol:MGG_05948 "Zinc knuckle domain-containing protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 EMBL:CM001233 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756 KO:K09250
RefSeq:XP_003711783.1 ProteinModelPortal:G4N4A8
EnsemblFungi:MGG_05948T0 GeneID:2684027 KEGG:mgr:MGG_05948
Uniprot:G4N4A8
Length = 199
Score = 142 (55.0 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 45/153 (29%), Positives = 59/153 (38%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-------------- 219
D P+RG CYNCG EGH++ C K +K C+ C H R C
Sbjct: 28 DCPNRGAAKCYNCGGEGHISRACPEEPKDQKICYRCSQPGHISRDCPSGGAGGGGGGGGG 87
Query: 220 -SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQ 278
S +C+ C + GH A++C K G+ G G Y
Sbjct: 88 QSSGAECYKCGEVGHIARNCS---KGGYGGGGGGGYSGGGG----GYGGGYG-GGAGGKT 139
Query: 279 CYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
CY C GH+ D V G C+ CG+ GH
Sbjct: 140 CYSCGGVGHMS----RDCVNGS-KCYNCGETGH 167
Score = 141 (54.7 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 34/100 (34%), Positives = 47/100 (47%)
Query: 179 GWQTCYNCGEEGHMAVNC--RSAVKRKKPCFVCGSLEHGVRQC-SKAQD---CFICKKGG 232
G +TCY CG+ H A +C R A K C+ CG H R C + +D C+ C + G
Sbjct: 12 GGRTCYTCGQPNHQARDCPNRGAAK----CYNCGGEGHISRACPEEPKDQKICYRCSQPG 67
Query: 233 HRAKDCPDKHKSGF-------QNAQVCLKCGDSGHDMFSC 265
H ++DCP G + C KCG+ GH +C
Sbjct: 68 HISRDCPSGGAGGGGGGGGGQSSGAECYKCGEVGHIARNC 107
Score = 121 (47.7 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 204 KPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMF 263
K C+ CG + H R C C+ C + GH ++DC + +G ++C KC GH
Sbjct: 138 KTCYSCGGVGHMSRDCVNGSKCYNCGETGHFSRDCSKRSTTG---EKMCYKCQQPGHVQA 194
Query: 264 SCRNS 268
C N+
Sbjct: 195 ECPNN 199
Score = 114 (45.2 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 39/152 (25%), Positives = 55/152 (36%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSA-----------VKRKKPCFVCGSLEHGVRQCSKA 222
+P D+ + CY C + GH++ +C S C+ CG + H R CSK
Sbjct: 53 EPKDQ--KICYRCSQPGHISRDCPSGGAGGGGGGGGGQSSGAECYKCGEVGHIARNCSKG 110
Query: 223 QDCFICKKGGHRAKDCPDKHKSGF---QNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQC 279
GG + G+ + C CG GH C N +C
Sbjct: 111 G---YGGGGGGGYSGGGGGYGGGYGGGAGGKTCYSCGGVGHMSRDCVNGS--------KC 159
Query: 280 YICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
Y C GH + GE C++C Q GH
Sbjct: 160 YNCGETGHFSRDCSKRSTTGEKMCYKCQQPGH 191
Score = 108 (43.1 bits), Expect = 0.00045, P = 0.00045
Identities = 34/110 (30%), Positives = 46/110 (41%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPC--FVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CY CGE GH+A NC + G +G A + C+ C GH ++DC
Sbjct: 94 CYKCGEVGHIARNCSKGGYGGGGGGGYSGGGGGYGGGYGGGAGGKTCYSCGGVGHMSRDC 153
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
N C CG++GH FS R+ E CY C+ GH+
Sbjct: 154 V--------NGSKCYNCGETGH--FS-RDCSKRSTTGEKMCYKCQQPGHV 192
>TAIR|locus:2005719 [details] [associations]
symbol:AT1G75560 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006457 "protein folding" evidence=RCA] [GO:0009408 "response
to heat" evidence=RCA] [GO:0009644 "response to high light
intensity" evidence=RCA] [GO:0034976 "response to endoplasmic
reticulum stress" evidence=RCA] [GO:0042542 "response to hydrogen
peroxide" evidence=RCA] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:BT005709
EMBL:AK118306 EMBL:AK175193 EMBL:AK175269 EMBL:AK175304
EMBL:AK175841 EMBL:AK176208 EMBL:AK176516 EMBL:AK176616
EMBL:AK176626 IPI:IPI00543969 RefSeq:NP_001077828.1
RefSeq:NP_565112.1 UniGene:At.34758 ProteinModelPortal:Q8GXC5
SMR:Q8GXC5 PaxDb:Q8GXC5 PRIDE:Q8GXC5 EnsemblPlants:AT1G75560.1
EnsemblPlants:AT1G75560.2 GeneID:843892 KEGG:ath:AT1G75560
TAIR:At1g75560 InParanoid:Q8GXC5 OMA:NEGICHS PhylomeDB:Q8GXC5
ProtClustDB:CLSN2689214 ArrayExpress:Q8GXC5 Genevestigator:Q8GXC5
Uniprot:Q8GXC5
Length = 257
Score = 149 (57.5 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 46/144 (31%), Positives = 57/144 (39%)
Query: 170 PRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
P +F C NCG GH+A C +A R C+ C H CS C C
Sbjct: 63 PGHFARDCSNVSVCNNCGLPGHIAAEC-TAESR---CWNCREPGHVASNCSNEGICHSCG 118
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC 289
K GHRA+DC + S + ++C C GH C N + C CR GH+
Sbjct: 119 KSGHRARDCSNSD-SRAGDLRLCNNCFKQGHLAADCTNDKA--------CKNCRTSGHIA 169
Query: 290 --CVNISDAVPGEVSCFRCGQLGH 311
C N D V C C GH
Sbjct: 170 RDCRN--DPV-----CNICSISGH 186
Score = 143 (55.4 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 41/130 (31%), Positives = 54/130 (41%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C NC GH A +C + C CG H +C+ C+ C++ GH A +C
Sbjct: 57 CNNCKRPGHFARDCSNV----SVCNNCGLPGHIAAECTAESRCWNCREPGHVASNC---- 108
Query: 243 KSGFQNAQVCLKCGDSGHDMFSCRNSYS-LDDLKEVQCYICRCFGHLCCVNISDAVPGEV 301
N +C CG SGH C NS S DL+ C C GHL +D +
Sbjct: 109 ----SNEGICHSCGKSGHRARDCSNSDSRAGDLR--LCNNCFKQGHLA----ADCT-NDK 157
Query: 302 SCFRCGQLGH 311
+C C GH
Sbjct: 158 ACKNCRTSGH 167
Score = 119 (46.9 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 38/135 (28%), Positives = 56/135 (41%)
Query: 183 CYNCGEEGHMAVNCRSAVKRK---KPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCP 239
C++CG+ GH A +C ++ R + C C H C+ + C C+ GH A+DC
Sbjct: 114 CHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCTNDKACKNCRTSGHIARDC- 172
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSCR---NSYSLDDLKEVQCYICRCFGHLCCVNISDA 296
+N VC C SGH C ++YS D V+ + G +
Sbjct: 173 -------RNDPVCNICSISGHVARHCPKGDSNYS-DRGSRVRDGGMQRGGLSRMSRDREG 224
Query: 297 VPGEVSCFRCGQLGH 311
V + C CG GH
Sbjct: 225 VSAMIICHNCGGRGH 239
>UNIPROTKB|E1BZR6 [details] [associations]
symbol:ZCCHC9 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010923 "negative
regulation of phosphatase activity" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0010923 CTD:84240 OMA:DSQEVRE
GeneTree:ENSGT00510000047308 EMBL:AADN02047870 IPI:IPI00571897
RefSeq:XP_424900.1 UniGene:Gga.34920 Ensembl:ENSGALT00000025157
GeneID:427320 KEGG:gga:427320 NextBio:20828598 Uniprot:E1BZR6
Length = 235
Score = 147 (56.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 31/106 (29%), Positives = 48/106 (45%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFIC 228
C++C E GH +C + ++ + C+ CGS EH + +C D CFIC
Sbjct: 95 CFHCREPGHGVADCPAVLESQDMGTGICYRCGSTEHDIGKCKAKIDPAVGAFPYAKCFIC 154
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
+ GH ++ CPD K + C CG H C + +LD +
Sbjct: 155 GEMGHLSRSCPDNPKGLYAEGGCCRLCGSVEHYRKDCPENQNLDQV 200
Score = 133 (51.9 bits), Expect = 7.3e-07, P = 7.3e-07
Identities = 29/95 (30%), Positives = 44/95 (46%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLDDLKEVQC 279
A CF C++ GH DCP +S +C +CG + HD+ C+ ++ +C
Sbjct: 92 AMVCFHCREPGHGVADCPAVLESQDMGTGICYRCGSTEHDIGKCKAKIDPAVGAFPYAKC 151
Query: 280 YICRCFGHLC--CVNISDAVPGEVSCFR-CGQLGH 311
+IC GHL C + + E C R CG + H
Sbjct: 152 FICGEMGHLSRSCPDNPKGLYAEGGCCRLCGSVEH 186
>TAIR|locus:2827810 [details] [associations]
symbol:CSP3 "cold shock domain protein 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEP;IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0009631
"cold acclimation" evidence=IMP] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 Prosite:PS00352
GO:GO:0005634 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0009631 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 InterPro:IPR019844 eggNOG:COG1278
ProtClustDB:CLSN2685328 GO:GO:0032508 HSSP:O54310 EMBL:AB308041
EMBL:AY035133 EMBL:AY062985 IPI:IPI00519047 PIR:T00837
RefSeq:NP_565427.1 UniGene:At.19464 ProteinModelPortal:Q94C69
SMR:Q94C69 PaxDb:Q94C69 PRIDE:Q94C69 EnsemblPlants:AT2G17870.1
GeneID:816297 KEGG:ath:AT2G17870 TAIR:At2g17870 InParanoid:Q94C69
OMA:MEDQSAA PhylomeDB:Q94C69 Genevestigator:Q94C69 Uniprot:Q94C69
Length = 301
Score = 150 (57.9 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 48/149 (32%), Positives = 61/149 (40%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK- 241
C+NCGE GHMA +C K F G G R+ +C++C GH A+DC
Sbjct: 96 CFNCGEVGHMAKDCDGGSGGKS--FGGG----GGRRSGGEGECYMCGDVGHFARDCRQSG 149
Query: 242 ---HKSGFQNAQVCLKCGDSGHDMFSCR-----NSYSLDDLKEVQ---CYICRCFGHL-- 288
G + C CG+ GH CR N Y + CY+C GH
Sbjct: 150 GGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFAR 209
Query: 289 -CCVNISDAVPGEVS-CFRCGQLGHTGLV 315
C N V G S C+ CG +GH V
Sbjct: 210 DCRQNGGGNVGGGGSTCYTCGGVGHIAKV 238
Score = 134 (52.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 43/141 (30%), Positives = 54/141 (38%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDC 238
G + CY+CGE GH+A +CR + G G + S C++C GH A+DC
Sbjct: 159 GGRPCYSCGEVGHLAKDCRGGSGGNR----YGG---GGGRGSGGDGCYMCGGVGHFARDC 211
Query: 239 PDKHKSGFQNA-QVCLKCGDSGHDMFSCRNSY-SLDDLKEVQCYICRCFGHLC--C---- 290
C CG GH C + S CY C GHL C
Sbjct: 212 RQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCDRRG 271
Query: 291 VNISDAVPGEVSCFRCGQLGH 311
S G CF CG+ GH
Sbjct: 272 SGSSGGGGGSNKCFICGKEGH 292
Score = 114 (45.2 bits), Expect = 0.00027, P = 0.00027
Identities = 26/76 (34%), Positives = 34/76 (44%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRK-----KPCFVCGSLEHGVRQCSK-----------A 222
G TCY CG GH+A C S + + C+ CG H R C + +
Sbjct: 222 GGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCDRRGSGSSGGGGGS 281
Query: 223 QDCFICKKGGHRAKDC 238
CFIC K GH A++C
Sbjct: 282 NKCFICGKEGHFAREC 297
>WB|WBGene00017210 [details] [associations]
symbol:F07E5.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0040011 "locomotion" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0006898
GO:GO:0040010 GO:GO:0046872 GO:GO:0008270 GO:GO:0040011
GO:GO:0003676 GO:GO:0040035 eggNOG:COG5082 Gene3D:4.10.60.10
SUPFAM:SSF57756 EMBL:FO080110 PIR:T34410 RefSeq:NP_494168.1
ProteinModelPortal:P91223 SMR:P91223 STRING:P91223 PaxDb:P91223
EnsemblMetazoa:F07E5.5 GeneID:173564 KEGG:cel:CELE_F07E5.5
UCSC:F07E5.5 CTD:173564 WormBase:F07E5.5
GeneTree:ENSGT00510000047308 HOGENOM:HOG000021839 InParanoid:P91223
OMA:INDWRAA NextBio:880195 Uniprot:P91223
Length = 384
Score = 152 (58.6 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 29/92 (31%), Positives = 44/92 (47%)
Query: 183 CYNCGEEGHMAVNC--RSAVKRKKPCFVCGSLEHGVRQCSKA-------QDCFICKKGGH 233
C++C E GH +C R++ CF CGS+EH + +C K CF+CK+ GH
Sbjct: 231 CFHCREPGHRLADCPKRNSSSSDGVCFKCGSMEHSIHECKKKGVKGFPYATCFVCKQVGH 290
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++DC + + C CG + H C
Sbjct: 291 ISRDCHQNVNGVYPDGGCCNVCGANTHLRRDC 322
Score = 146 (56.5 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 28/90 (31%), Positives = 41/90 (45%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRC 284
CF C++ GHR DCP ++ S VC KCG H + C+ + C++C+
Sbjct: 231 CFHCREPGHRLADCPKRNSSSSDG--VCFKCGSMEHSIHECKKK-GVKGFPYATCFVCKQ 287
Query: 285 FGHL---CCVNISDAVPGEVSCFRCGQLGH 311
GH+ C N++ P C CG H
Sbjct: 288 VGHISRDCHQNVNGVYPDGGCCNVCGANTH 317
>POMBASE|SPAC683.02c [details] [associations]
symbol:SPAC683.02c "zf-CCHC type zinc finger protein"
species:4896 "Schizosaccharomyces pombe" [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 PomBase:SPAC683.02c
EMBL:CU329670 GO:GO:0005730 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
PIR:T50246 RefSeq:NP_594481.1 EnsemblFungi:SPAC683.02c.1
GeneID:2543491 KEGG:spo:SPAC683.02c HOGENOM:HOG000059608
OMA:FICHENG OrthoDB:EOG4P8JTN NextBio:20804503 Uniprot:Q9HFF2
Length = 218
Score = 144 (55.7 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 30/97 (30%), Positives = 42/97 (43%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA-----QDCFICKKGGHRAKD 237
C+ C ++GH+ +C A CF CGS EH + CSK CFIC + GH +
Sbjct: 79 CFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQ 138
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
C K + C C H C + + DD+
Sbjct: 139 CEQNPKGLYPKGGCCKFCSSVHHLAKDC-DQVNKDDV 174
Score = 132 (51.5 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 29/99 (29%), Positives = 44/99 (44%)
Query: 216 VRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLK 275
+ Q ++ + CF C++ GH +DCP+ N +C +CG H + +C LK
Sbjct: 70 INQRNRDKFCFACRQQGHIVQDCPEAK----DNVSICFRCGSKEHSLNACSKK---GPLK 122
Query: 276 EVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+C+IC GHL C N P C C + H
Sbjct: 123 FAKCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHH 161
>UNIPROTKB|F1RF07 [details] [associations]
symbol:ZCCHC9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010923 "negative regulation of phosphatase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0010923 CTD:84240 OMA:DSQEVRE GeneTree:ENSGT00510000047308
EMBL:CU928538 RefSeq:NP_001231149.1 UniGene:Ssc.1803
Ensembl:ENSSSCT00000015433 GeneID:100514154 KEGG:ssc:100514154
Uniprot:F1RF07
Length = 270
Score = 147 (56.8 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 31/109 (28%), Positives = 51/109 (46%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFIC 228
C++C + GH +C +A++ ++ C+ CGS EH + +C D CF+C
Sbjct: 129 CFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEIIKCKAQVDPALGEFPFAKCFVC 188
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
+ GH ++ CPD K + + C CG H C S + D + V
Sbjct: 189 GEMGHLSRSCPDNPKGLYADGGCCRLCGSVEHFKKDCPESKNSDQMVTV 237
Score = 136 (52.9 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 29/102 (28%), Positives = 49/102 (48%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C++ GH DCP ++ +C +CG + H++ C+ +L
Sbjct: 119 RQAAKKNAMVCFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEIIKCKAQVDPALG 178
Query: 273 DLKEVQCYICRCFGHLC--CVNISDAVPGEVSCFR-CGQLGH 311
+ +C++C GHL C + + + C R CG + H
Sbjct: 179 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGCCRLCGSVEH 220
>MGI|MGI:1916335 [details] [associations]
symbol:Zcchc9 "zinc finger, CCHC domain containing 9"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0010923 "negative regulation of
phosphatase activity" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 MGI:MGI:1916335 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0010923 HOGENOM:HOG000059608 CTD:84240 HOVERGEN:HBG056034
EMBL:BC010687 EMBL:BC024496 IPI:IPI00122218 RefSeq:NP_663428.2
UniGene:Mm.52356 ProteinModelPortal:Q8R1J3 SMR:Q8R1J3
PhosphoSite:Q8R1J3 PRIDE:Q8R1J3 GeneID:69085 KEGG:mmu:69085
UCSC:uc007rkb.1 InParanoid:Q8R1J3 NextBio:328566 Bgee:Q8R1J3
CleanEx:MM_ZCCHC9 Genevestigator:Q8R1J3
GermOnline:ENSMUSG00000021621 Uniprot:Q8R1J3
Length = 273
Score = 147 (56.8 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 33/102 (32%), Positives = 48/102 (47%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C++ GH DCP +S +C +CG + H+M CR + +L
Sbjct: 120 RQAAKKNAMVCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPALG 179
Query: 273 DLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+ +C++C GHL C N SC CG + H
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNTKGVYADGGSCKLCGSVEH 221
Score = 140 (54.3 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 29/104 (27%), Positives = 48/104 (46%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFIC 228
C++C + GH +C + ++ + C+ CGS EH + +C D CF+C
Sbjct: 130 CFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPALGEFPFAKCFVC 189
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
+ GH ++ CPD K + + C CG H CR + + D
Sbjct: 190 GEMGHLSRSCPDNTKGVYADGGSCKLCGSVEHFKKDCRENQNSD 233
>UNIPROTKB|F6V033 [details] [associations]
symbol:ZCCHC9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
CTD:84240 OMA:DSQEVRE GeneTree:ENSGT00510000047308
EMBL:AAEX03002099 RefSeq:XP_536305.1 Ensembl:ENSCAFT00000013818
GeneID:479161 KEGG:cfa:479161 Uniprot:F6V033
Length = 271
Score = 145 (56.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 31/109 (28%), Positives = 50/109 (45%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFIC 228
C++C + GH +C +A++ + C+ CGS EH + +C D CF+C
Sbjct: 130 CFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVC 189
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
+ GH ++ CPD K + + C CG H C S + D + V
Sbjct: 190 GEMGHLSRSCPDNPKGLYADGGCCRLCGSVEHFKKDCPESQNSDRMVTV 238
Score = 138 (53.6 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 30/102 (29%), Positives = 49/102 (48%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C+K GH DCP ++ +C +CG + H++ C+ +L
Sbjct: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 179
Query: 273 DLKEVQCYICRCFGHLC--CVNISDAVPGEVSCFR-CGQLGH 311
+ +C++C GHL C + + + C R CG + H
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGCCRLCGSVEH 221
>UNIPROTKB|F1ML79 [details] [associations]
symbol:ZCCHC9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
OMA:DSQEVRE GeneTree:ENSGT00510000047308 EMBL:DAAA02021025
IPI:IPI00689669 UniGene:Bt.61596 Ensembl:ENSBTAT00000006931
Uniprot:F1ML79
Length = 271
Score = 145 (56.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 30/104 (28%), Positives = 49/104 (47%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFIC 228
C++C + GH +C +A++ ++ C+ CGS EH + +C D CF+C
Sbjct: 130 CFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVC 189
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
+ GH ++ CPD K + + C CG H C S + D
Sbjct: 190 GEMGHLSRSCPDNPKGLYADGGGCRLCGSVEHMKKDCPESQNSD 233
Score = 130 (50.8 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 29/102 (28%), Positives = 46/102 (45%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C++ GH DCP ++ +C +CG + H++ C+ +L
Sbjct: 120 RQAAKKNAMVCFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEITKCKAKVDPALG 179
Query: 273 DLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+ +C++C GHL C N C CG + H
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCRLCGSVEH 221
>RGD|1307450 [details] [associations]
symbol:Zcchc9 "zinc finger, CCHC domain containing 9"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0010923 "negative regulation of phosphatase activity"
evidence=IEA;ISO] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 RGD:1307450 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0010923
EMBL:CH473955 HOGENOM:HOG000059608 CTD:84240 HOVERGEN:HBG056034
OMA:DSQEVRE OrthoDB:EOG49W2G3 GeneTree:ENSGT00510000047308
EMBL:BC083695 IPI:IPI00555221 RefSeq:NP_001013174.1
UniGene:Rn.94285 Ensembl:ENSRNOT00000020111 GeneID:309986
KEGG:rno:309986 UCSC:RGD:1307450 InParanoid:Q5XII6 NextBio:661527
Genevestigator:Q5XII6 Uniprot:Q5XII6
Length = 271
Score = 143 (55.4 bits), Expect = 7.5e-08, P = 7.5e-08
Identities = 32/102 (31%), Positives = 47/102 (46%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C++ GH DCP +S +C +CG + H+M CR + +L
Sbjct: 120 RQAAKKNAMVCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMTKCRANVDPALG 179
Query: 273 DLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+ +C++C GHL C N C CG + H
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNTKGVYADGGGCKLCGSVEH 221
Score = 132 (51.5 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 28/104 (26%), Positives = 47/104 (45%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFIC 228
C++C + GH +C + ++ + C+ CGS EH + +C D CF+C
Sbjct: 130 CFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMTKCRANVDPALGEFPFAKCFVC 189
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
+ GH ++ CPD K + + C CG H C + + D
Sbjct: 190 GEMGHLSRSCPDNTKGVYADGGGCKLCGSVEHFKKDCPENQNSD 233
>WB|WBGene00019537 [details] [associations]
symbol:K08D12.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0046872 GO:GO:0008270 GO:GO:0040011
GO:GO:0000003 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 OMA:FQFMSSS
GeneTree:ENSGT00510000047065 EMBL:FO081610 GeneID:176979
KEGG:cel:CELE_K08D12.3 UCSC:K08D12.3a.1 CTD:176979 NextBio:894830
RefSeq:NP_741323.1 ProteinModelPortal:Q966I7 SMR:Q966I7
STRING:Q966I7 PRIDE:Q966I7 EnsemblMetazoa:K08D12.3a.1
EnsemblMetazoa:K08D12.3a.2 WormBase:K08D12.3a InParanoid:Q966I7
ArrayExpress:Q966I7 Uniprot:Q966I7
Length = 151
Score = 124 (48.7 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 37/119 (31%), Positives = 48/119 (40%)
Query: 179 GWQTCYNCGEEGHMAVNC---------RSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
G TCYNC E GH + +C R C+ CG H R C A+
Sbjct: 33 GGSTCYNCQETGHFSRDCPKGGSGGGQRGGGGGGGSCYNCGGRGHYSRDCPSARS--EGG 90
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
GG+ + + G Q C CG SGH C S S + E +CY C+ GH+
Sbjct: 91 SGGYGGRGGEGRSFGG----QKCYNCGRSGHISRECTESGSAE---EKRCYQCQETGHI 142
Score = 112 (44.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 26/87 (29%), Positives = 40/87 (45%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDC 238
G +CYNCG GH + +C SA G G + Q C+ C + GH +++C
Sbjct: 65 GGGSCYNCGGRGHYSRDCPSARSEGGSGGYGG--RGGEGRSFGGQKCYNCGRSGHISREC 122
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ SG + C +C ++GH C
Sbjct: 123 TE---SGSAEEKRCYQCQETGHISRDC 146
Score = 102 (41.0 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 26/95 (27%), Positives = 39/95 (41%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
+ CY C + GH++ NC + G + G R C+ C++ GH ++DCP
Sbjct: 4 RNCYKCQQPGHISRNCPN-----------GESDGGRRGGGGGSTCYNCQETGHFSRDCPK 52
Query: 241 KHKSGFQNAQ-----VCLKCGDSGHDMFSCRNSYS 270
G Q C CG GH C ++ S
Sbjct: 53 GGSGGGQRGGGGGGGSCYNCGGRGHYSRDCPSARS 87
Score = 42 (19.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 299 GEVSCFRCGQLGH 311
G C+ CG+ GH
Sbjct: 105 GGQKCYNCGRSGH 117
>UNIPROTKB|G4MRA3 [details] [associations]
symbol:MGG_13778 "Zinc finger protein GIS2" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 EMBL:CM001231 KO:K09250 RefSeq:XP_003710840.1
ProteinModelPortal:G4MRA3 EnsemblFungi:MGG_13778T0 GeneID:5048998
KEGG:mgr:MGG_13778 Uniprot:G4MRA3
Length = 230
Score = 138 (53.6 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 31/92 (33%), Positives = 42/92 (45%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRA 235
+ CY CG GH A C SA ++ C+ C H C ++A+ C+ C+ GH
Sbjct: 7 RACYKCGNVGHYAEVCSSA---ERLCYNCKQPGHESNGCPLPRTTEAKQCYHCQGLGHVQ 63
Query: 236 KDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
DCP SG + C CG GH +C N
Sbjct: 64 ADCPTLRLSGAGSNGRCYSCGQPGHLARACPN 95
Score = 123 (48.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 36/138 (26%), Positives = 53/138 (38%)
Query: 183 CYNCGEEGHMAVNCR-SAVKRKKPCFVCGSLEHGVRQC-----SKAQD---CFICKKGGH 233
CYNC + GH + C K C+ C L H C S A C+ C + GH
Sbjct: 29 CYNCKQPGHESNGCPLPRTTEAKQCYHCQGLGHVQADCPTLRLSGAGSNGRCYSCGQPGH 88
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNI 293
A+ CP+ + + + G G + R ++ + CY C H
Sbjct: 89 LARACPNPNGANMGRGAPVPRGGYGGG--YGGRGGFA-GGARPATCYKCGGPNHFA---- 141
Query: 294 SDAVPGEVSCFRCGQLGH 311
D + C+ CG+LGH
Sbjct: 142 RDCQAQAMKCYACGKLGH 159
Score = 122 (48.0 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 30/100 (30%), Positives = 43/100 (43%)
Query: 203 KKPCFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHD 261
++ C+ CG++ H CS A+ C+ CK+ GH + CP + A+ C C GH
Sbjct: 6 RRACYKCGNVGHYAEVCSSAERLCYNCKQPGHESNGCPLPRTT---EAKQCYHCQGLGHV 62
Query: 262 MFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVPG 299
C +CY C GHL C N + A G
Sbjct: 63 QADCPTLRLSGAGSNGRCYSCGQPGHLARACPNPNGANMG 102
Score = 115 (45.5 bits), Expect = 0.00011, P = 0.00011
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 202 RKKPCFVCGSLEHGVRQC-SKAQDCFICKKGGHRAKDCPDKHKSGFQNA-QVCLKCGDSG 259
R C+ CG H R C ++A C+ C K GH ++DC + + C +CG++G
Sbjct: 127 RPATCYKCGGPNHFARDCQAQAMKCYACGKLGHISRDCTAPNGGPLNTVGKTCYQCGEAG 186
Query: 260 HDMFSC 265
H C
Sbjct: 187 HISRQC 192
Score = 114 (45.2 bits), Expect = 0.00014, P = 0.00014
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK---------AQDCFICKKGG 232
TCY CG H A +C++ + C+ CG L H R C+ + C+ C + G
Sbjct: 130 TCYKCGGPNHFARDCQAQAMK---CYACGKLGHISRDCTAPNGGPLNTVGKTCYQCGEAG 186
Query: 233 HRAKDCPDKHKS-GFQNA 249
H ++ CP K + G NA
Sbjct: 187 HISRQCPTKATANGDSNA 204
Score = 108 (43.1 bits), Expect = 0.00073, P = 0.00073
Identities = 34/142 (23%), Positives = 53/142 (37%)
Query: 183 CYNCGEEGHMAVNCR----SAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK-----KGGH 233
CY+C GH+ +C S C+ CG H R C + + +GG+
Sbjct: 53 CYHCQGLGHVQADCPTLRLSGAGSNGRCYSCGQPGHLARACPNPNGANMGRGAPVPRGGY 112
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CV 291
+G C KCG H C+ + ++CY C GH+ C
Sbjct: 113 GGGYGGRGGFAGGARPATCYKCGGPNHFARDCQ-------AQAMKCYACGKLGHISRDCT 165
Query: 292 NISDAVPGEV--SCFRCGQLGH 311
+ V +C++CG+ GH
Sbjct: 166 APNGGPLNTVGKTCYQCGEAGH 187
>ZFIN|ZDB-GENE-031030-9 [details] [associations]
symbol:zcchc9 "zinc finger, CCHC domain containing 9"
species:7955 "Danio rerio" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 ZFIN:ZDB-GENE-031030-9 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR025836 Pfam:PF14392 HOGENOM:HOG000059608 CTD:84240
HOVERGEN:HBG056034 OrthoDB:EOG49W2G3 EMBL:BC049028 IPI:IPI00484605
RefSeq:NP_938184.1 UniGene:Dr.79609 ProteinModelPortal:Q7ZUI6
STRING:Q7ZUI6 GeneID:386639 KEGG:dre:386639 InParanoid:Q7ZUI6
NextBio:20813967 ArrayExpress:Q7ZUI6 Uniprot:Q7ZUI6
Length = 256
Score = 138 (53.6 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 30/97 (30%), Positives = 43/97 (44%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFIC 228
C+NC + GH +C A ++ C+ CGS EH +++C D CF+C
Sbjct: 117 CFNCRKPGHGLADCPEANNDEEMGRGICYRCGSTEHEIQRCRAKVDPAMGNYPYAKCFVC 176
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ GH +K CPD K + C CG H C
Sbjct: 177 GQTGHLSKACPDNPKGLYAAGGCCRVCGSVEHFQKDC 213
Score = 134 (52.2 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 29/102 (28%), Positives = 48/102 (47%)
Query: 217 RQCSKAQD--CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K + CF C+K GH DCP+ + +C +CG + H++ CR ++
Sbjct: 107 RQNTKKSNMICFNCRKPGHGLADCPEANNDEEMGRGICYRCGSTEHEIQRCRAKVDPAMG 166
Query: 273 DLKEVQCYICRCFGHL--CCVNISDAVPGEVSCFR-CGQLGH 311
+ +C++C GHL C + + C R CG + H
Sbjct: 167 NYPYAKCFVCGQTGHLSKACPDNPKGLYAAGGCCRVCGSVEH 208
>UNIPROTKB|Q8N567 [details] [associations]
symbol:ZCCHC9 "Zinc finger CCHC domain-containing protein
9" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0010923 "negative regulation of phosphatase activity"
evidence=IDA] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
EMBL:CH471084 eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0010923 HOGENOM:HOG000059608 EMBL:AK314160 EMBL:AL512712
EMBL:BC032736 IPI:IPI00410284 RefSeq:NP_001124507.1
RefSeq:NP_001124508.1 RefSeq:NP_115656.1 UniGene:Hs.15536
ProteinModelPortal:Q8N567 SMR:Q8N567 IntAct:Q8N567
PhosphoSite:Q8N567 DMDM:116242852 PaxDb:Q8N567 PRIDE:Q8N567
Ensembl:ENST00000254037 Ensembl:ENST00000380199
Ensembl:ENST00000407610 Ensembl:ENST00000438268 GeneID:84240
KEGG:hsa:84240 UCSC:uc003khi.3 CTD:84240 GeneCards:GC05P080597
HGNC:HGNC:25424 HPA:HPA038404 neXtProt:NX_Q8N567
PharmGKB:PA134931870 HOVERGEN:HBG056034 InParanoid:Q8N567
OMA:DSQEVRE OrthoDB:EOG49W2G3 PhylomeDB:Q8N567 GenomeRNAi:84240
NextBio:73713 Bgee:Q8N567 CleanEx:HS_ZCCHC9 Genevestigator:Q8N567
GermOnline:ENSG00000131732 Uniprot:Q8N567
Length = 271
Score = 138 (53.6 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 30/109 (27%), Positives = 50/109 (45%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFIC 228
C++C + GH +C +A++ + C+ CGS EH + +C D CF+C
Sbjct: 130 CFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVC 189
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
+ GH ++ CPD K + + C CG H C S + + + V
Sbjct: 190 GEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSERMVTV 238
Score = 134 (52.2 bits), Expect = 9.3e-07, P = 9.3e-07
Identities = 30/102 (29%), Positives = 46/102 (45%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C+K GH DCP ++ +C +CG + H++ C+ +L
Sbjct: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 179
Query: 273 DLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+ +C++C GHL C N C CG + H
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEH 221
>SGD|S000001341 [details] [associations]
symbol:AIR1 "Zinc knuckle protein" species:4932
"Saccharomyces cerevisiae" [GO:0071036 "nuclear
polyadenylation-dependent snoRNA catabolic process" evidence=IGI]
[GO:0071039 "nuclear polyadenylation-dependent CUT catabolic
process" evidence=IGI] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IGI] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IGI;IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031499 "TRAMP complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0071031 "nuclear mRNA surveillance of mRNA 3'-end
processing" evidence=IGI] [GO:0043629 "ncRNA polyadenylation"
evidence=IDA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0071037 "nuclear polyadenylation-dependent snRNA
catabolic process" evidence=IGI] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 SGD:S000001341 GO:GO:0005737 GO:GO:0005730
GO:GO:0046872 EMBL:BK006942 GO:GO:0008270 GO:GO:0003676
eggNOG:COG5082 OrthoDB:EOG4F21BK GO:GO:0031499 Gene3D:4.10.60.10
InterPro:IPR016713 PIRSF:PIRSF018162 SUPFAM:SSF57756 EMBL:Z37997
PIR:S48365 RefSeq:NP_012186.1 ProteinModelPortal:P40507 SMR:P40507
DIP:DIP-2700N IntAct:P40507 MINT:MINT-518330 STRING:P40507
PaxDb:P40507 PeptideAtlas:P40507 EnsemblFungi:YIL079C GeneID:854731
KEGG:sce:YIL079C CYGD:YIL079c GeneTree:ENSGT00510000048226
HOGENOM:HOG000000966 KO:K12597 OMA:HISADCK NextBio:977425
Genevestigator:P40507 GermOnline:YIL079C GO:GO:0043629
GO:GO:0071031 GO:GO:0071039 GO:GO:0071035 GO:GO:0071036
GO:GO:0071037 GO:GO:0071038 Uniprot:P40507
Length = 360
Score = 140 (54.3 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 45/142 (31%), Positives = 54/142 (38%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLE-HGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C NC + GH+ NC + C CG ++ H + C KA C C GH CP K
Sbjct: 76 CNNCSQRGHLKRNCPHVI-----CTYCGFMDDHYSQHCPKAIICTNCNANGHYKSQCPHK 130
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSCRN---SYSLD---------DLKEVQCYICRCFGHL- 288
K F C C H C + SY L D + V CY C GH
Sbjct: 131 WKKVF-----CTLCNSKRHSRERCPSIWRSYLLKTKDANQGDFDFQTVFCYNCGNAGHFG 185
Query: 289 --CCVNISDAVPG-EVSCFRCG 307
C S VP + S F CG
Sbjct: 186 DDCAERRSSRVPNTDGSAF-CG 206
>ASPGD|ASPL0000040986 [details] [associations]
symbol:AN9093 species:162425 "Emericella nidulans"
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0045182 "translation regulator
activity" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0042788 "polysomal ribosome" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 EMBL:BN001306 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 HOGENOM:HOG000186262 EnsemblFungi:CADANIAT00009521
OMA:QAGHISR Uniprot:C8VH53
Length = 233
Score = 130 (50.8 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 38/136 (27%), Positives = 52/136 (38%)
Query: 183 CYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCSKAQ------DCFICKKGGHRA 235
CYNC + GH + +C R K C+ C L H C + C+ C + GH A
Sbjct: 28 CYNCKQPGHESSSCPRPRTTETKQCYNCQGLGHVQADCPTLRLNGANGRCYNCSQPGHLA 87
Query: 236 KDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISD 295
++CP SG + G G R Y + CY C H D
Sbjct: 88 RNCPAP-ASGAPRGTGAPRGGFGG----GFRGGYG-GYPRAATCYKCGGPNHFA----RD 137
Query: 296 AVPGEVSCFRCGQLGH 311
+ C+ CG+LGH
Sbjct: 138 CQAQAMKCYACGKLGH 153
Score = 125 (49.1 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 202 RKKPCFVCGSLEHGVRQC-SKAQDCFICKKGGHRAKDCPDKHKSGFQNA-QVCLKCGDSG 259
R C+ CG H R C ++A C+ C K GH ++DC + +A +VC KC +G
Sbjct: 121 RAATCYKCGGPNHFARDCQAQAMKCYACGKLGHISRDCTAPNGGPLSSAGKVCYKCSQAG 180
Query: 260 HDMFSCRNS 268
H C N+
Sbjct: 181 HISRDCPNN 189
Score = 118 (46.6 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC---------SKAQDCFICKKGG 232
TCY CG H A +C++ + C+ CG L H R C S + C+ C + G
Sbjct: 124 TCYKCGGPNHFARDCQAQAMK---CYACGKLGHISRDCTAPNGGPLSSAGKVCYKCSQAG 180
Query: 233 HRAKDCPD 240
H ++DCP+
Sbjct: 181 HISRDCPN 188
Score = 116 (45.9 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 27/90 (30%), Positives = 40/90 (44%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRA 235
+ CY CG GH A C S+ ++ C+ C H C ++ + C+ C+ GH
Sbjct: 6 RACYKCGNIGHYAEVCSSS---ERLCYNCKQPGHESSSCPRPRTTETKQCYNCQGLGHVQ 62
Query: 236 KDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
DCP +G N + C C GH +C
Sbjct: 63 ADCPTLRLNG-ANGR-CYNCSQPGHLARNC 90
Score = 116 (45.9 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 26/87 (29%), Positives = 41/87 (47%)
Query: 203 KKPCFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHD 261
++ C+ CG++ H CS ++ C+ CK+ GH + CP + + Q C C GH
Sbjct: 5 RRACYKCGNIGHYAEVCSSSERLCYNCKQPGHESSSCPRPRTT--ETKQ-CYNCQGLGHV 61
Query: 262 MFSCRNSYSLDDLKEVQCYICRCFGHL 288
C + L+ +CY C GHL
Sbjct: 62 QADCP-TLRLNGANG-RCYNCSQPGHL 86
Score = 111 (44.1 bits), Expect = 0.00033, P = 0.00033
Identities = 37/120 (30%), Positives = 45/120 (37%)
Query: 183 CYNCGEEGHMAVNC---RSAVKRKKPC---FVCGSLEHGVRQCSKAQDCFICKKGGHRAK 236
CYNC + GH+A NC S R G G +A C+ C H A+
Sbjct: 77 CYNCSQPGHLARNCPAPASGAPRGTGAPRGGFGGGFRGGYGGYPRAATCYKCGGPNHFAR 136
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCR--NSYSLDDLKEVQCYICRCFGHLC--CVN 292
DC + A C CG GH C N L +V CY C GH+ C N
Sbjct: 137 DCQAQ-------AMKCYACGKLGHISRDCTAPNGGPLSSAGKV-CYKCSQAGHISRDCPN 188
Score = 107 (42.7 bits), Expect = 0.00098, P = 0.00098
Identities = 43/152 (28%), Positives = 59/152 (38%)
Query: 175 PPDRGWQT--CYNCGEEGHMAVNCRSAVKR--KKPCFVCGSLEHGVRQC----SKAQDCF 226
P R +T CYNC GH+ +C + C+ C H R C S A
Sbjct: 42 PRPRTTETKQCYNCQGLGHVQADCPTLRLNGANGRCYNCSQPGHLARNCPAPASGAPRGT 101
Query: 227 ICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFG 286
+GG G+ A C KCG H C+ + ++CY C G
Sbjct: 102 GAPRGGFGGGFRGGY--GGYPRAATCYKCGGPNHFARDCQ-------AQAMKCYACGKLG 152
Query: 287 HLC--CV--N---ISDAVPGEVSCFRCGQLGH 311
H+ C N +S A G+V C++C Q GH
Sbjct: 153 HISRDCTAPNGGPLSSA--GKV-CYKCSQAGH 181
>ASPGD|ASPL0000046912 [details] [associations]
symbol:AN1944 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001878 PROSITE:PS50158 SMART:SM00343 EMBL:BN001307
GO:GO:0008270 GO:GO:0003676 EMBL:AACD01000029 eggNOG:COG5082
Gene3D:4.10.60.10 SUPFAM:SSF57756 KO:K12597 RefSeq:XP_659548.1
EnsemblFungi:CADANIAT00008604 GeneID:2875623 KEGG:ani:AN1944.2
HOGENOM:HOG000192719 OMA:SASEIPC OrthoDB:EOG498Z8B Uniprot:Q5BBY6
Length = 690
Score = 138 (53.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 39/124 (31%), Positives = 55/124 (44%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSL-EHGVRQCSKAQDCFICKKGGHRAKDCPD 240
TC C +EGH+A C + + C CG+ +H C K + C C+ GH AKDCP
Sbjct: 361 TCMECLQEGHLAEVCPT-----RECVHCGAWNKHQSSLCPKFRRCQRCRGRGHDAKDCPS 415
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC--------RNSYSLDDLKEVQCYICRCFGHLC--C 290
KS C CG + H + C +++ SL L + C C HL C
Sbjct: 416 ALKSSASEIP-CDLCGSADHLEYDCDYLWKLPRQDTTSLPVLVSISCAHCTSNRHLIGDC 474
Query: 291 VNIS 294
++S
Sbjct: 475 PSLS 478
>ZFIN|ZDB-GENE-030102-2 [details] [associations]
symbol:zcchc7 "zinc finger, CCHC domain containing 7"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 ZFIN:ZDB-GENE-030102-2
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GeneTree:ENSGT00510000048226 EMBL:BX511134
EMBL:BX284619 EMBL:CR786570 IPI:IPI00996291
Ensembl:ENSDART00000129066 ArrayExpress:F1QLY2 Bgee:F1QLY2
Uniprot:F1QLY2
Length = 627
Score = 137 (53.3 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 36/132 (27%), Positives = 59/132 (44%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
TC NC + GH++ NC + +K+ C +CG H +R C + C C GH + DC ++
Sbjct: 275 TCRNCNKTGHLSKNCPT-LKKVPCCSLCGLRGHLLRTCPN-RHCSNCSLPGHTSDDCLER 332
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEV 301
F + C +CG +GH + +C + Q ++ G + A
Sbjct: 333 ---AFWYKR-CHRCGMTGHFIDACPQIWR-------QYHLTTTAGPIRKSADPKACQKRA 381
Query: 302 SCFRCGQLGHTG 313
C+ C + GH G
Sbjct: 382 YCYNCSRKGHFG 393
>UNIPROTKB|P24736 [details] [associations]
symbol:gag "Gag polyprotein" species:11703 "Human
immunodeficiency virus type 1 (STRAIN UGANDAN / ISOLATE U455)"
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006278 "RNA-dependent DNA replication"
evidence=TAS] [GO:0010008 "endosome membrane" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] [GO:0046788 "egress of virus within host cell"
evidence=TAS] InterPro:IPR000071 InterPro:IPR000721
InterPro:IPR001878 InterPro:IPR008916 InterPro:IPR008919
InterPro:IPR010999 InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540
Pfam:PF00607 PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343
GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430
GO:GO:0046872 GO:GO:0005198 GO:GO:0008270 GO:GO:0003723
GO:GO:0010008 GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0042025 GO:GO:0019028
GO:GO:0019076 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0046788 GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705
EMBL:M62320 PDB:1NCP PDBsum:1NCP ProteinModelPortal:P24736
SMR:P24736 EvolutionaryTrace:P24736 Uniprot:P24736
Length = 493
Score = 130 (50.8 bits), Expect = 9.4e-06, P = 9.4e-06
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ R RGPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 361 EAMSQVQQTSIMMQRGNFRGPRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 410
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 411 GKEGHQMKDCTERQANFLGK 430
>SGD|S000002334 [details] [associations]
symbol:AIR2 "RNA-binding subunit of the TRAMP nuclear RNA
surveillance complex" species:4932 "Saccharomyces cerevisiae"
[GO:0030674 "protein binding, bridging" evidence=IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0031499 "TRAMP complex" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IGI;IDA] [GO:0043629 "ncRNA
polyadenylation" evidence=IDA] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IGI]
[GO:0071036 "nuclear polyadenylation-dependent snoRNA catabolic
process" evidence=IGI] [GO:0071037 "nuclear
polyadenylation-dependent snRNA catabolic process" evidence=IGI]
[GO:0071031 "nuclear mRNA surveillance of mRNA 3'-end processing"
evidence=IGI] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IDA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IGI]
[GO:0006400 "tRNA modification" evidence=IMP] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 SGD:S000002334 GO:GO:0005730
GO:GO:0046872 GO:GO:0008270 EMBL:BK006938 GO:GO:0030674
GO:GO:0003723 GO:GO:0006400 eggNOG:COG5082 OrthoDB:EOG4F21BK
GO:GO:0031499 Gene3D:4.10.60.10 InterPro:IPR016713
PIRSF:PIRSF018162 SUPFAM:SSF57756 GeneTree:ENSGT00510000048226
HOGENOM:HOG000000966 KO:K12597 GO:GO:0043629 GO:GO:0071031
GO:GO:0071039 GO:GO:0071035 GO:GO:0071036 GO:GO:0071037
GO:GO:0071038 EMBL:Z74223 EMBL:Z67750 PIR:S61037 RefSeq:NP_010106.1
PDB:2LLI PDB:3NYB PDBsum:2LLI PDBsum:3NYB ProteinModelPortal:Q12476
SMR:Q12476 DIP:DIP-2543N IntAct:Q12476 MINT:MINT-543316
STRING:Q12476 PaxDb:Q12476 PeptideAtlas:Q12476 EnsemblFungi:YDL175C
GeneID:851379 KEGG:sce:YDL175C CYGD:YDL175c
EvolutionaryTrace:Q12476 NextBio:968516 Genevestigator:Q12476
GermOnline:YDL175C Uniprot:Q12476
Length = 344
Score = 127 (49.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 51/171 (29%), Positives = 66/171 (38%)
Query: 156 EISDNIVLRKLLRGP-RYF----DPPD---RGWQTCYNCGEEGHMAVNCRSAVKRKKPCF 207
E++ N + LRG RYF D D C NC + GH+ +C + C
Sbjct: 28 EVNSNPNELRALRGQGRYFGVSDDDKDAIKEAAPKCNNCSQRGHLKKDCPHII-----CS 82
Query: 208 VCGSLE-HGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
CG+ + H R C KA C C + GH CP HK ++ Q C C H C
Sbjct: 83 YCGATDDHYSRHCPKAIQCSKCDEVGHYRSQCP--HK--WKKVQ-CTLCKSKKHSKERCP 137
Query: 267 N---SYSLDDLKE-----------VQCYICRCFGHL---CCVNISDAVPGE 300
+ +Y L D E + CY C GH C S VP E
Sbjct: 138 SIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDCKEKRSSRVPNE 188
>TAIR|locus:2078526 [details] [associations]
symbol:AT3G42860 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=RCA] [GO:0009640 "photomorphogenesis"
evidence=RCA] [GO:0010212 "response to ionizing radiation"
evidence=RCA] [GO:0010388 "cullin deneddylation" evidence=RCA]
[GO:0016567 "protein ubiquitination" evidence=RCA] [GO:0016571
"histone methylation" evidence=RCA] [GO:0016579 "protein
deubiquitination" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] InterPro:IPR001878
InterPro:IPR010666 Pfam:PF00098 Pfam:PF06839 PROSITE:PS50158
SMART:SM00343 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 eggNOG:COG5082 Gene3D:4.10.60.10
SUPFAM:SSF57756 EMBL:AL138654 EMBL:AY065276 EMBL:AY133785
IPI:IPI00532574 PIR:T47344 RefSeq:NP_189872.1 UniGene:At.28534
ProteinModelPortal:Q9M1L9 SMR:Q9M1L9 EnsemblPlants:AT3G42860.1
GeneID:823332 KEGG:ath:AT3G42860 TAIR:At3g42860
HOGENOM:HOG000006218 InParanoid:Q9M1L9 OMA:CGFFKWC PhylomeDB:Q9M1L9
ProtClustDB:CLSN2684249 ArrayExpress:Q9M1L9 Genevestigator:Q9M1L9
Uniprot:Q9M1L9
Length = 372
Score = 126 (49.4 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 48/174 (27%), Positives = 69/174 (39%)
Query: 158 SDNIVLR----KLLRGPRYFDPPDRGWQT------CYNCGEEGHMAVNCRSAVKRKKPCF 207
+DN+V + + + D RG+Q CY CG+EGH A +C + P
Sbjct: 204 NDNVVSSPTSYSVTKNSNFGDSDTRGYQNAKTGTPCYKCGKEGHWARDC-TVQSDTGP-- 260
Query: 208 VCGSLEHGVRQCSKAQDCFICKKGGHRAKDC----------PDKHKSGFQNAQVCLKCGD 257
V+ S A DCF C K GH ++DC P + KS + + C KCG
Sbjct: 261 --------VKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGE-CYKCGK 311
Query: 258 SGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
GH C S + Q S + G+ C++CG+ GH
Sbjct: 312 QGHWSRDCTGQSSNQQFQSGQAK-------------STSSTGD--CYKCGKAGH 350
>WB|WBGene00001601 [details] [associations]
symbol:glh-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0007276 "gamete generation"
evidence=IMP] [GO:0043186 "P granule" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0008432 "JUN kinase binding" evidence=IPI]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 GO:GO:0042127 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0007276
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:AF079508 EMBL:FO081191 PIR:T32759 PIR:T43326
RefSeq:NP_491207.3 ProteinModelPortal:O76743 SMR:O76743
IntAct:O76743 STRING:O76743 PaxDb:O76743 PRIDE:O76743
EnsemblMetazoa:T12F5.3.1 EnsemblMetazoa:T12F5.3.2 GeneID:171941
KEGG:cel:CELE_T12F5.3 UCSC:T12F5.3.1 CTD:171941 WormBase:T12F5.3
InParanoid:O76743 NextBio:873335 Uniprot:O76743
Length = 1156
Score = 132 (51.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 36/109 (33%), Positives = 45/109 (41%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKDC 238
C+NCGEEGH++ C + PC C L H C + + C C GH A DC
Sbjct: 572 CHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDC 631
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGH 287
D+ K C CG GH C+N + E C C GH
Sbjct: 632 -DQPKVP---RGPCRNCGQEGHFAKDCQNERVRMEPTE-PCRRCAEEGH 675
Score = 122 (48.0 bits), Expect = 0.00024, P = 0.00024
Identities = 26/87 (29%), Positives = 40/87 (45%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKDC 238
C NC + GH A +C + PC CG H C + + C C + GH AKDC
Sbjct: 595 CRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDC 654
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ + + + C +C + GH + C
Sbjct: 655 QNE-RVRMEPTEPCRRCAEEGHWGYEC 680
>UNIPROTKB|P20873 [details] [associations]
symbol:gag "Gag polyprotein" species:11688 "Human
immunodeficiency virus type 1 (JRCSF ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 EMBL:M38429 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705
ProteinModelPortal:P20873 SMR:P20873 Uniprot:P20873
Length = 504
Score = 126 (49.4 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 22/47 (46%), Positives = 33/47 (70%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 392 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 436
>UNIPROTKB|P12493 [details] [associations]
symbol:gag "Gag polyprotein" species:11698 "Human
immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0019221 "cytokine-mediated signaling pathway"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0005654
GO:GO:0030430 GO:GO:0046872 GO:GO:0005198 GO:GO:0008270
GO:GO:0019221 GO:GO:0003723 GO:GO:0010008 GO:GO:0020002
GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260
GO:GO:0042025 GO:GO:0019028 EMBL:M19921 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 PDB:2C55 PDBsum:2C55
DisProt:DP00101 ProteinModelPortal:P12493 SMR:P12493
EvolutionaryTrace:P12493 Uniprot:P12493
Length = 500
Score = 125 (49.1 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 392 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 436
>UNIPROTKB|P12494 [details] [associations]
symbol:gag "Gag polyprotein" species:11694 "Human
immunodeficiency virus type 1 (JH3 ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 EMBL:M21137
ProteinModelPortal:P12494 SMR:P12494 Uniprot:P12494
Length = 500
Score = 125 (49.1 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 392 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCNERQANFLGK 436
>UNIPROTKB|P35962 [details] [associations]
symbol:gag "Gag polyprotein" species:362651 "Human
immunodeficiency virus type 1 (isolate YU2)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 EMBL:M93258 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 PIR:A44001 PDB:1F6U
PDB:1MFS PDB:2R05 PDBsum:1F6U PDBsum:1MFS PDBsum:2R05
ProteinModelPortal:P35962 SMR:P35962 EvolutionaryTrace:P35962
Uniprot:P35962
Length = 500
Score = 125 (49.1 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 392 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 436
>UNIPROTKB|Q72497 [details] [associations]
symbol:gag "Gag polyprotein" species:11676 "Human
immunodeficiency virus 1" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000071 InterPro:IPR000721
InterPro:IPR001878 InterPro:IPR008916 InterPro:IPR008919
InterPro:IPR010999 InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540
Pfam:PF00607 PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343
GO:GO:0030430 GO:GO:0046872 GO:GO:0005198 GO:GO:0008270
GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0042025
GO:GO:0019028 GO:GO:0019076 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
InterPro:IPR014817 Pfam:PF08705 PDB:1M9D PDBsum:1M9D PDB:1M9C
PDB:1M9E PDB:1M9F PDB:1M9X PDB:1M9Y PDBsum:1M9C PDBsum:1M9E
PDBsum:1M9F PDBsum:1M9X PDBsum:1M9Y PDB:3OBU PDB:3OBX PDBsum:3OBU
PDBsum:3OBX EMBL:U26942 PDB:1L6N PDB:2BUO PDB:2JMG PDB:2NV3
PDBsum:1L6N PDBsum:2BUO PDBsum:2JMG PDBsum:2NV3
ProteinModelPortal:Q72497 SMR:Q72497 DIP:DIP-36777N IntAct:Q72497
EvolutionaryTrace:Q72497 Uniprot:Q72497
Length = 500
Score = 125 (49.1 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 392 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 436
>UNIPROTKB|P04594 [details] [associations]
symbol:gag "Gag polyprotein" species:11697 "Human
immunodeficiency virus type 1 (MAL ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 EMBL:X04415 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 PIR:T01667
ProteinModelPortal:P04594 SMR:P04594 Uniprot:P04594
Length = 505
Score = 125 (49.1 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 398 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 442
>UNIPROTKB|P20889 [details] [associations]
symbol:gag "Gag polyprotein" species:11699 "Human
immunodeficiency virus type 1 (OYI ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 EMBL:M26727 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705
ProteinModelPortal:P20889 SMR:P20889 Uniprot:P20889
Length = 499
Score = 124 (48.7 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 391 CFNCGKEGHIAKNCRAP--RKKGCWKCGREGHQMKDCTERQANFLGK 435
>UNIPROTKB|Q70622 [details] [associations]
symbol:gag "Gag polyprotein" species:82834 "Human
immunodeficiency virus type 1 lw12.3 isolate" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 EMBL:U12055 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 PDB:1HVN PDB:1HVO
PDB:1U57 PDB:2ZNF PDBsum:1HVN PDBsum:1HVO PDBsum:1U57 PDBsum:2ZNF
ProteinModelPortal:Q70622 SMR:Q70622 EvolutionaryTrace:Q70622
Uniprot:Q70622
Length = 500
Score = 124 (48.7 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 392 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 436
>UNIPROTKB|P03348 [details] [associations]
symbol:gag "Gag polyprotein" species:11686 "Human
immunodeficiency virus type 1 (BRU ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 EMBL:K02013 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705
ProteinModelPortal:P03348 SMR:P03348 Uniprot:P03348
Length = 512
Score = 124 (48.7 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 392 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 436
>UNIPROTKB|P03349 [details] [associations]
symbol:gag "Gag polyprotein" species:11685 "HIV-1
M:B_ARV2/SF2" [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006278 "RNA-dependent DNA replication"
evidence=TAS] [GO:0010008 "endosome membrane" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] [GO:0046788 "egress of virus within host cell"
evidence=TAS] InterPro:IPR000071 InterPro:IPR000721
InterPro:IPR001878 InterPro:IPR008916 InterPro:IPR008919
InterPro:IPR010999 InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540
Pfam:PF00607 PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343
GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430
GO:GO:0046872 GO:GO:0005198 GO:GO:0008270 GO:GO:0003723
GO:GO:0010008 GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0042025 GO:GO:0019028
EMBL:K02007 GO:GO:0019076 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
PIR:A03947 ProteinModelPortal:P03349 SMR:P03349 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 Uniprot:P03349
Length = 502
Score = 123 (48.4 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 394 CFNCGKEGHIAKNCRAP--RKKGCWRCGREGHQMKDCTERQANFLGK 438
>UNIPROTKB|P24740 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11703 "Human
immunodeficiency virus type 1 (STRAIN UGANDAN / ISOLATE U455)"
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006278 "RNA-dependent DNA replication"
evidence=TAS] [GO:0016032 "viral reproduction" evidence=TAS]
[GO:0019061 "uncoating of virus" evidence=TAS] [GO:0030260 "entry
into host cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 PDB:1E27 PDBsum:1E27 GO:GO:0016020
GO:GO:0046872 GO:GO:0003677 GO:GO:0005198 GO:GO:0008270
GO:GO:0006508 GO:GO:0003723 GO:GO:0046718 GO:GO:0020002
GO:GO:0006310 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964
GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260
GO:GO:0004190 Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630
GO:GO:0004523 GO:GO:0015074 GO:GO:0075713 GO:GO:0042025
GO:GO:0003887 GO:GO:0019028 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0019061 EMBL:M62320 PDB:1NCP PDBsum:1NCP GO:GO:0075732
Gene3D:1.10.10.200 InterPro:IPR017856 SUPFAM:SSF50122
SUPFAM:SSF46919 InterPro:IPR018061 Pfam:PF00077 GO:GO:0004533
GO:GO:0039651 GO:GO:0046797 Gene3D:2.30.30.10 PDB:3LZS PDB:3LZU
PDBsum:3LZS PDBsum:3LZU ProteinModelPortal:P24740 SMR:P24740
EvolutionaryTrace:P24740 Uniprot:P24740
Length = 1428
Score = 128 (50.1 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ R RGPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 361 EAMSQVQQTSIMMQRGNFRGPRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 410
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 411 GKEGHQMKDCTERQANFL 428
>UNIPROTKB|P12498 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11694 "Human
immunodeficiency virus type 1 (JH3 ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000721
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0030430 GO:GO:0016020 GO:GO:0046872 GO:GO:0005198
GO:GO:0008270 GO:GO:0006508 GO:GO:0003723 GO:GO:0020002
GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260
GO:GO:0004190 Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630
GO:GO:0042025 GO:GO:0019028 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0019061 EMBL:M21137 InterPro:IPR018061 Pfam:PF00077
GO:GO:0046797 ProteinModelPortal:P12498 SMR:P12498 Uniprot:P12498
Length = 532
Score = 123 (48.4 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 392 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCNERQANFL 434
>UNIPROTKB|P18800 [details] [associations]
symbol:gag "Gag polyprotein" species:11695 "Human
immunodeficiency virus type 1 (NDK ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 EMBL:M27323 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 PIR:JQ0065
ProteinModelPortal:P18800 SMR:P18800 Uniprot:P18800
Length = 497
Score = 122 (48.0 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 390 CFNCGKEGHTAKNCRAP--RKKGCWKCGREGHQMKDCTERQANFLGK 434
>UNIPROTKB|P04591 [details] [associations]
symbol:gag "Gag polyprotein" species:11706 "HIV-1
M:B_HXB2R" [GO:0005515 "protein binding" evidence=IPI] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 EMBL:K03455 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 RefSeq:NP_057850.1
PDB:1TSQ PDB:1TSU PDBsum:1TSQ PDBsum:1TSU ProteinModelPortal:P04591
SMR:P04591 IntAct:P04591 EvolutionaryTrace:P04591 Uniprot:P04591
Length = 500
Score = 122 (48.0 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 392 CFNCGKEGHTARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 436
>UNIPROTKB|P04592 [details] [associations]
symbol:gag "Gag polyprotein" species:11689 "Human
immunodeficiency virus type 1 (ELI ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 EMBL:K03454 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705
ProteinModelPortal:P04592 SMR:P04592 Uniprot:P04592
Length = 500
Score = 122 (48.0 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 393 CFNCGKEGHIAKNCRAP--RKKGCWRCGKEGHQLKDCTERQANFL 435
>UNIPROTKB|Q77YG1 [details] [associations]
symbol:gag "Gag" species:11676 "Human immunodeficiency
virus 1" [GO:0006754 "ATP biosynthetic process" evidence=IMP]
[GO:0060550 "positive regulation of fructose 1,6-bisphosphate
1-phosphatase activity" evidence=IDA] [GO:0060559 "positive
regulation of calcidiol 1-monooxygenase activity" evidence=IMP]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0030430
GO:GO:0046872 GO:GO:0005198 GO:GO:0008270 GO:GO:0006754
GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0042025
GO:GO:0019028 EMBL:AF033819 GO:GO:0019076 Gene3D:1.10.1200.30
Gene3D:1.10.150.90 Gene3D:1.10.375.10 SUPFAM:SSF47353
SUPFAM:SSF47943 SUPFAM:SSF47836 InterPro:IPR014817 Pfam:PF08705
RefSeq:NP_057850.1 GO:GO:0060559 GO:GO:0060550 EMBL:EF553538
PDB:3NTE PDBsum:3NTE ProteinModelPortal:Q77YG1 SMR:Q77YG1
ChEMBL:CHEMBL3556 EvolutionaryTrace:Q77YG1 Uniprot:Q77YG1
Length = 500
Score = 122 (48.0 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 392 CFNCGKEGHTARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 436
>UNIPROTKB|P12495 [details] [associations]
symbol:gag "Gag polyprotein" species:11683 "Human
immunodeficiency virus type 1 (Z2/CDC-Z34 ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 PDB:1SJE PDB:1SJH
PDBsum:1SJE PDBsum:1SJH GO:GO:0046872 GO:GO:0005198 GO:GO:0008270
GO:GO:0003723 GO:GO:0010008 GO:GO:0020002 GO:GO:0006278
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0042025
GO:GO:0019028 EMBL:M22639 GO:GO:0019076 Gene3D:1.10.1200.30
Gene3D:1.10.150.90 Gene3D:1.10.375.10 SUPFAM:SSF47353
SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788 GO:GO:0019061
InterPro:IPR014817 Pfam:PF08705 PIR:S54377 PDB:3D3T PDBsum:3D3T
ProteinModelPortal:P12495 SMR:P12495 EvolutionaryTrace:P12495
Uniprot:P12495
Length = 501
Score = 122 (48.0 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ R+K C+ CG H ++ C++ Q F+ K
Sbjct: 394 CFNCGKEGHIAKNCRAP--RRKGCWKCGKEGHQLKDCTERQANFLGK 438
>UNIPROTKB|P05888 [details] [associations]
symbol:gag "Gag polyprotein" species:11696 "HIV-1 M:B_MN"
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006278 "RNA-dependent DNA replication"
evidence=TAS] [GO:0010008 "endosome membrane" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] [GO:0046788 "egress of virus within host cell"
evidence=TAS] InterPro:IPR000071 InterPro:IPR000721
InterPro:IPR001878 InterPro:IPR008916 InterPro:IPR008919
InterPro:IPR010999 InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540
Pfam:PF00607 PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343
GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430
GO:GO:0046872 GO:GO:0005198 GO:GO:0008270 GO:GO:0003723
GO:GO:0010008 GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0042025 GO:GO:0019028
EMBL:M17449 GO:GO:0019076 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0046788 GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705
PIR:A38068 PDB:1AAF PDBsum:1AAF ProteinModelPortal:P05888
SMR:P05888 MINT:MINT-7014121 BindingDB:P05888
EvolutionaryTrace:P05888 Uniprot:P05888
Length = 507
Score = 122 (48.0 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RK+ C+ CG H ++ C++ Q F+ K
Sbjct: 395 CFNCGKEGHIAKNCRAP--RKRGCWKCGKEGHQMKDCTERQANFLGK 439
>UNIPROTKB|P03347 [details] [associations]
symbol:gag "Gag polyprotein" species:11678 "Human
immunodeficiency virus type 1 BH10" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006278 "RNA-dependent DNA replication"
evidence=TAS] [GO:0010008 "endosome membrane" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] [GO:0046788 "egress of virus within host cell"
evidence=TAS] InterPro:IPR000071 InterPro:IPR000721
InterPro:IPR001878 InterPro:IPR008916 InterPro:IPR008919
InterPro:IPR010999 InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540
Pfam:PF00607 PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343
GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430
GO:GO:0046872 GO:GO:0005198 GO:GO:0008270 GO:GO:0003723
GO:GO:0010008 GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0042025 GO:GO:0019028
EMBL:M15654 EMBL:K02083 EMBL:X01762 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 PIR:A03945 PIR:A03948
ProteinModelPortal:P03347 SMR:P03347 IntAct:P03347 Uniprot:P03347
Length = 512
Score = 122 (48.0 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 392 CFNCGKEGHTARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 436
>TAIR|locus:2057295 [details] [associations]
symbol:AT2G12880 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:AC006437
EMBL:AC007155 IPI:IPI00547403 PIR:C84504 RefSeq:NP_178944.1
UniGene:At.52721 ProteinModelPortal:Q9SKG2 SMR:Q9SKG2 PRIDE:Q9SKG2
EnsemblPlants:AT2G12880.1 GeneID:815767 KEGG:ath:AT2G12880
TAIR:At2g12880 eggNOG:KOG4400 InParanoid:Q9SKG2 PhylomeDB:Q9SKG2
ArrayExpress:Q9SKG2 Genevestigator:Q9SKG2 Uniprot:Q9SKG2
Length = 119
Score = 99 (39.9 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 19/64 (29%), Positives = 26/64 (40%)
Query: 204 KPCFVCGSLEHGVRQCSKAQD-------CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCG 256
+ C+ CG L H R C C+ C + GHR+ CP+K C CG
Sbjct: 34 RACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWCG 93
Query: 257 DSGH 260
+ H
Sbjct: 94 NQDH 97
Score = 91 (37.1 bits), Expect = 0.00067, P = 0.00067
Identities = 26/88 (29%), Positives = 39/88 (44%)
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CV 291
RA D+ ++ + + + C KCG GH SC + + + CY C GH C
Sbjct: 19 RASYNNDRRRNDY-DPRACYKCGKLGHFARSC-HVVTQPTTAYITCYFCSEEGHRSNGCP 76
Query: 292 NI-SDAVPGEVSCFRCGQLGHT-GLVSW 317
N +D V + C+ CG H L+ W
Sbjct: 77 NKRTDQVNPKGHCYWCGNQDHRFNLIIW 104
>UNIPROTKB|P04593 [details] [associations]
symbol:gag "Gag polyprotein" species:11682 "Human
immunodeficiency virus type 1 (BH5 ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 EMBL:K02012
ProteinModelPortal:P04593 SMR:P04593 Uniprot:P04593
Length = 512
Score = 121 (47.7 bits), Expect = 0.00011, P = 0.00011
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NC++ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 392 CFNCGKEGHIARNCKAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 436
>UNIPROTKB|Q65XV7 [details] [associations]
symbol:P0016H04.11 "Os05g0111000 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001878 InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF00098 Pfam:PF01336
Pfam:PF04057 PROSITE:PS50158 SMART:SM00343 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0008270
EMBL:AP008211 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:CM000142 InterPro:IPR013955
Pfam:PF08646 eggNOG:COG1599 KO:K07466 TIGRFAMs:TIGR00617
HOGENOM:HOG000162322 EMBL:AC079356 RefSeq:NP_001054445.1
UniGene:Os.53618 IntAct:Q65XV7 EnsemblPlants:LOC_Os05g02040.1
GeneID:4337594 KEGG:osa:4337594 OMA:RWTIKVR ProtClustDB:CLSN2695308
Uniprot:Q65XV7
Length = 951
Score = 124 (48.7 bits), Expect = 0.00011, P = 0.00011
Identities = 32/113 (28%), Positives = 44/113 (38%)
Query: 178 RGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC---SKAQDCFICKKGGHR 234
R QTC CG GH A C G G + + +C+ CK+ GH
Sbjct: 811 RNLQTCSICGANGHSAQICHVGADMDMQETSAGGSSMGNYNSIAGNGSSECYKCKQPGHY 870
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGH 287
A+DCP + G + C KC GH C + +C+ C+ GH
Sbjct: 871 ARDCPGQSTGGLE----CFKCKQPGHFSRDC----PVQSTGGSECFKCKQPGH 915
Score = 121 (47.7 bits), Expect = 0.00024, P = 0.00024
Identities = 26/74 (35%), Positives = 35/74 (47%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC----SKAQDCFICKKGGHR 234
G CY C + GH A +C CF C H R C + +CF CK+ GH
Sbjct: 857 GSSECYKCKQPGHYARDCPGQSTGGLECFKCKQPGHFSRDCPVQSTGGSECFKCKQPGHF 916
Query: 235 AKDCPDKHKSGFQN 248
A+DCP + +G Q+
Sbjct: 917 ARDCPGQ-STGAQH 929
>UNIPROTKB|P05887 [details] [associations]
symbol:gag "Gag polyprotein" species:11687 "Human
immunodeficiency virus type 1 (CDC-451 ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 EMBL:M13136
PIR:A25523 ProteinModelPortal:P05887 SMR:P05887 Uniprot:P05887
Length = 500
Score = 120 (47.3 bits), Expect = 0.00013, P = 0.00013
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NC++ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 392 CFNCGKEGHIARNCKAP--RKKGCWKCGREGHQMKDCTERQANFLGK 436
>UNIPROTKB|P20875 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11688 "Human
immunodeficiency virus type 1 (JRCSF ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0005198 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0046718 GO:GO:0020002 GO:GO:0006310
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964 GO:GO:0006278
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0004190
Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630 GO:GO:0004523
GO:GO:0015074 GO:GO:0075713 GO:GO:0042025 GO:GO:0003887
GO:GO:0019028 EMBL:M38429 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0019061 GO:GO:0075732 Gene3D:1.10.10.200 InterPro:IPR017856
SUPFAM:SSF50122 SUPFAM:SSF46919 InterPro:IPR018061 Pfam:PF00077
PDB:1KJ4 PDB:1KJ7 PDBsum:1KJ4 PDBsum:1KJ7 GO:GO:0004533
GO:GO:0039651 GO:GO:0046797 Gene3D:2.30.30.10
ProteinModelPortal:P20875 SMR:P20875 EvolutionaryTrace:P20875
Uniprot:P20875
Length = 1439
Score = 124 (48.7 bits), Expect = 0.00018, P = 0.00018
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+
Sbjct: 392 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKECTERQANFL 434
>UNIPROTKB|G5E6N6 [details] [associations]
symbol:G5E6N6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00510000047308 EMBL:DAAA02018957
Ensembl:ENSBTAT00000064097 Uniprot:G5E6N6
Length = 252
Score = 114 (45.2 bits), Expect = 0.00018, P = 0.00018
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----CFVCGS-----LEHGVRQCSKAQDCFICKKGGH 233
C++C +GH +C +A++ ++ C+ CGS L+ + + A+ CF+C + GH
Sbjct: 117 CFHC-RQGHGIADCPAALENQEMGTGICYWCGSTCKVKLDPALGELPFAK-CFVCGEMGH 174
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ CPD K + + C CG H C
Sbjct: 175 LSRSCPDNPKGLYADGGGCRLCGSVEHLKKDC 206
>UNIPROTKB|P12497 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11698 "Human
immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] [GO:0042802 "identical protein binding"
evidence=IPI] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0005198 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0046718 GO:GO:0020002 GO:GO:0006310
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964 GO:GO:0006278
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0004190
Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630 GO:GO:0004523
GO:GO:0015074 GO:GO:0075713 GO:GO:0042025 GO:GO:0003887
GO:GO:0019028 EMBL:M19921 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0019061 GO:GO:0075732 Gene3D:1.10.10.200 InterPro:IPR017856
SUPFAM:SSF50122 SUPFAM:SSF46919 InterPro:IPR018061 Pfam:PF00077
GO:GO:0004533 GO:GO:0039651 GO:GO:0046797 Gene3D:2.30.30.10
PDB:1A43 PDB:1A8O PDB:1AFV PDB:1AK4 PDB:1AUM PDB:1B92 PDB:1B9D
PDB:1B9F PDB:1BAJ PDB:1BHL PDB:1BI4 PDB:1BIS PDB:1BIU PDB:1BIZ
PDB:1BL3 PDB:1GWP PDB:1HIW PDB:1HYV PDB:1HYZ PDB:1ITG PDB:1K6Y
PDB:1M9D PDB:1QS4 PDB:1UPH PDB:1WJB PDB:1WJD PDB:1WKN PDB:1ZA9
PDB:2B4J PDB:2GOL PDB:2GON PDB:2H3F PDB:2H3I PDB:2H3Q PDB:2H3V
PDB:2H3Z PDB:2HMX PDB:2HVP PDB:2ITG PDB:2JPR PDB:2JYG PDB:2JYL
PDB:2LF4 PDB:2ONT PDB:2PWM PDB:2PWO PDB:2PXR PDB:2X2D PDB:2XDE
PDB:2XV6 PDB:2XXM PDB:3AV9 PDB:3AVA PDB:3AVB PDB:3AVC PDB:3AVF
PDB:3AVG PDB:3AVH PDB:3AVJ PDB:3AVK PDB:3AVL PDB:3AVM PDB:3AVN
PDB:3DIK PDB:3DPH PDB:3DS0 PDB:3DS1 PDB:3DS2 PDB:3DS3 PDB:3DS4
PDB:3DS5 PDB:3DTJ PDB:3GV2 PDB:3H47 PDB:3H4E PDB:3L3U PDB:3L3V
PDB:3LPT PDB:3LPU PDB:3LRY PDB:3MGE PDB:3NF6 PDB:3NF7 PDB:3NF8
PDB:3NF9 PDB:3NFA PDB:3P05 PDB:3P0A PDB:3S85 PDB:4AH9 PDB:4AHR
PDB:4AHS PDB:4AHT PDB:4AHU PDB:4AHV PDB:4DGA PDB:4DGE PDB:4DMN
PDB:4E1M PDB:4E1N PDB:4E91 PDB:4E92 PDB:4PHV PDB:5HVP PDB:9HVP
PDBsum:1A43 PDBsum:1A8O PDBsum:1AFV PDBsum:1AK4 PDBsum:1AUM
PDBsum:1B92 PDBsum:1B9D PDBsum:1B9F PDBsum:1BAJ PDBsum:1BHL
PDBsum:1BI4 PDBsum:1BIS PDBsum:1BIU PDBsum:1BIZ PDBsum:1BL3
PDBsum:1GWP PDBsum:1HIW PDBsum:1HYV PDBsum:1HYZ PDBsum:1ITG
PDBsum:1K6Y PDBsum:1M9D PDBsum:1QS4 PDBsum:1UPH PDBsum:1WJB
PDBsum:1WJD PDBsum:1WKN PDBsum:1ZA9 PDBsum:2B4J PDBsum:2GOL
PDBsum:2GON PDBsum:2H3F PDBsum:2H3I PDBsum:2H3Q PDBsum:2H3V
PDBsum:2H3Z PDBsum:2HMX PDBsum:2HVP PDBsum:2ITG PDBsum:2JPR
PDBsum:2JYG PDBsum:2JYL PDBsum:2LF4 PDBsum:2ONT PDBsum:2PWM
PDBsum:2PWO PDBsum:2PXR PDBsum:2X2D PDBsum:2XDE PDBsum:2XV6
PDBsum:2XXM PDBsum:3AV9 PDBsum:3AVA PDBsum:3AVB PDBsum:3AVC
PDBsum:3AVF PDBsum:3AVG PDBsum:3AVH PDBsum:3AVJ PDBsum:3AVK
PDBsum:3AVL PDBsum:3AVM PDBsum:3AVN PDBsum:3DIK PDBsum:3DPH
PDBsum:3DS0 PDBsum:3DS1 PDBsum:3DS2 PDBsum:3DS3 PDBsum:3DS4
PDBsum:3DS5 PDBsum:3DTJ PDBsum:3GV2 PDBsum:3H47 PDBsum:3H4E
PDBsum:3L3U PDBsum:3L3V PDBsum:3LPT PDBsum:3LPU PDBsum:3LRY
PDBsum:3MGE PDBsum:3NF6 PDBsum:3NF7 PDBsum:3NF8 PDBsum:3NF9
PDBsum:3NFA PDBsum:3P05 PDBsum:3P0A PDBsum:3S85 PDBsum:4AH9
PDBsum:4AHR PDBsum:4AHS PDBsum:4AHT PDBsum:4AHU PDBsum:4AHV
PDBsum:4DGA PDBsum:4DGE PDBsum:4DMN PDBsum:4E1M PDBsum:4E1N
PDBsum:4E91 PDBsum:4E92 PDBsum:4PHV PDBsum:5HVP PDBsum:9HVP
IntAct:P12497 EvolutionaryTrace:P12497 Uniprot:P12497
Length = 1435
Score = 123 (48.4 bits), Expect = 0.00023, P = 0.00023
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 392 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKDCTERQANFL 434
>UNIPROTKB|P35963 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:362651 "Human
immunodeficiency virus type 1 (isolate YU2)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0005198 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0046718 GO:GO:0020002 GO:GO:0006310
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964 GO:GO:0006278
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0004190
Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630 GO:GO:0004523
GO:GO:0015074 GO:GO:0075713 GO:GO:0042025 GO:GO:0003887
GO:GO:0019028 EMBL:M93258 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0019061 PDB:1F6U PDB:1MFS PDBsum:1F6U PDBsum:1MFS
GO:GO:0075732 Gene3D:1.10.10.200 InterPro:IPR017856 SUPFAM:SSF50122
SUPFAM:SSF46919 InterPro:IPR018061 Pfam:PF00077 GO:GO:0004533
GO:GO:0039651 GO:GO:0046797 Gene3D:2.30.30.10 PDB:3U7S PDBsum:3U7S
PIR:B44001 PDB:1K6C PDB:1K6P PDB:1K6T PDB:1K6V PDB:1T7I PDB:1T7J
PDB:1WJA PDB:1WJC PDB:2JO0 PDB:2L6E PDB:3OQ7 PDB:3OQA PDB:3OQD
PDB:3OTS PDB:3OTY PDB:3OU1 PDB:3OU3 PDB:3OU4 PDB:3OUA PDB:3OUB
PDB:3OUC PDB:3OUD PDB:3PJ6 PDB:4A6B PDB:4A6C PDBsum:1K6C
PDBsum:1K6P PDBsum:1K6T PDBsum:1K6V PDBsum:1T7I PDBsum:1T7J
PDBsum:1WJA PDBsum:1WJC PDBsum:2JO0 PDBsum:2L6E PDBsum:3OQ7
PDBsum:3OQA PDBsum:3OQD PDBsum:3OTS PDBsum:3OTY PDBsum:3OU1
PDBsum:3OU3 PDBsum:3OU4 PDBsum:3OUA PDBsum:3OUB PDBsum:3OUC
PDBsum:3OUD PDBsum:3PJ6 PDBsum:4A6B PDBsum:4A6C
ProteinModelPortal:P35963 SMR:P35963 DIP:DIP-45385N IntAct:P35963
EvolutionaryTrace:P35963 Uniprot:P35963
Length = 1435
Score = 123 (48.4 bits), Expect = 0.00023, P = 0.00023
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 392 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKDCTERQANFL 434
>UNIPROTKB|P04588 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11697 "Human
immunodeficiency virus type 1 (MAL ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 PDB:1HHJ PDBsum:1HHJ GO:GO:0016020
GO:GO:0046872 GO:GO:0003677 GO:GO:0005198 GO:GO:0008270
GO:GO:0006508 GO:GO:0003723 GO:GO:0046718 GO:GO:0020002
GO:GO:0006310 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964
GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260
GO:GO:0004190 Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630
GO:GO:0004523 GO:GO:0015074 GO:GO:0075713 GO:GO:0042025
GO:GO:0003887 GO:GO:0019028 EMBL:X04415 Gene3D:1.10.1200.30
Gene3D:1.10.150.90 Gene3D:1.10.375.10 SUPFAM:SSF47353
SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0019061 GO:GO:0075732
Gene3D:1.10.10.200 InterPro:IPR017856 SUPFAM:SSF50122
SUPFAM:SSF46919 InterPro:IPR018061 Pfam:PF00077 GO:GO:0004533
GO:GO:0039651 GO:GO:0046797 Gene3D:2.30.30.10 PIR:T01668 PDB:3IXO
PDBsum:3IXO ProteinModelPortal:P04588 SMR:P04588
EvolutionaryTrace:P04588 Uniprot:P04588
Length = 1440
Score = 123 (48.4 bits), Expect = 0.00023, P = 0.00023
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 398 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFL 440
>DICTYBASE|DDB_G0271832 [details] [associations]
symbol:DDB_G0271832 "Zinc finger CCHC
domain-containing protein 7" species:44689 "Dictyostelium
discoideum" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001878
PROSITE:PS50158 SMART:SM00343 dictyBase:DDB_G0271832 GO:GO:0008270
GO:GO:0003676 EMBL:AAFI02000006 Gene3D:4.10.60.10 SUPFAM:SSF57756
RefSeq:XP_645525.1 ProteinModelPortal:Q55AJ7
EnsemblProtists:DDB0216923 GeneID:8618154 KEGG:ddi:DDB_G0271832
eggNOG:NOG260401 InParanoid:Q55AJ7 Uniprot:Q55AJ7
Length = 772
Score = 120 (47.3 bits), Expect = 0.00024, P = 0.00024
Identities = 22/64 (34%), Positives = 31/64 (48%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C CG+ H + C ++ +KPCF CG H + CS CF C GH + C K+
Sbjct: 276 CERCGDHDHFSFECPHDIE-EKPCFRCGEFGHQIASCS-VYVCFRCGLHGHYPRQCLPKY 333
Query: 243 KSGF 246
+ F
Sbjct: 334 QKYF 337
>UNIPROTKB|P05960 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11687 "Human
immunodeficiency virus type 1 (CDC-451 ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000721
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0030430 GO:GO:0016020 GO:GO:0046872 GO:GO:0005198
GO:GO:0008270 GO:GO:0006508 GO:GO:0003723 GO:GO:0020002
GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260
GO:GO:0004190 Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630
GO:GO:0042025 GO:GO:0019028 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0019061 EMBL:M13136 InterPro:IPR018061 Pfam:PF00077
GO:GO:0046797 ProteinModelPortal:P05960 SMR:P05960 Uniprot:P05960
Length = 550
Score = 118 (46.6 bits), Expect = 0.00026, P = 0.00026
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NC++ RKK C+ CG H ++ C++ Q F+
Sbjct: 392 CFNCGKEGHIARNCKAP--RKKGCWKCGREGHQMKDCTERQANFL 434
>POMBASE|SPBP35G2.08c [details] [associations]
symbol:air1 "zinc knuckle TRAMP complex subunit Air1"
species:4896 "Schizosaccharomyces pombe" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016075 "rRNA catabolic
process" evidence=ISO] [GO:0016076 "snRNA catabolic process"
evidence=ISO] [GO:0016077 "snoRNA catabolic process" evidence=ISO]
[GO:0016078 "tRNA catabolic process" evidence=ISO] [GO:0031499
"TRAMP complex" evidence=IDA] [GO:0043630 "ncRNA polyadenylation
involved in polyadenylation-dependent ncRNA catabolic process"
evidence=ISO] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 PomBase:SPBP35G2.08c GO:GO:0005730 GO:GO:0046872
EMBL:CU329671 GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0003676
RefSeq:NP_595383.2 HSSP:Q9H9Z2 STRING:Q9P795
EnsemblFungi:SPBP35G2.08c.1 GeneID:2541349 eggNOG:COG5082
OrthoDB:EOG4F21BK NextBio:20802458 GO:GO:0031499 GO:GO:0043630
GO:GO:0016075 GO:GO:0016077 GO:GO:0016076 GO:GO:0016078
Gene3D:4.10.60.10 InterPro:IPR016713 PIRSF:PIRSF018162
SUPFAM:SSF57756 Uniprot:Q9P795
Length = 315
Score = 114 (45.2 bits), Expect = 0.00030, P = 0.00030
Identities = 38/139 (27%), Positives = 61/139 (43%)
Query: 132 SVIVRKEE-QKVETADNG-DEGVTTVEISDNIVLRKLLRGPRYF--DPPDRGWQTCYNCG 187
SV + K + Q + D+ D +T+E + + RG RYF DP + C+NC
Sbjct: 39 SVSLEKHDFQGSDDHDSSTDLSDSTLEDVEGSEWADVSRG-RYFGSDPSES--IVCHNCK 95
Query: 188 EEGHMAVNCRSAVKRKKPCFVCGSLEHGVR-QCSKAQDCFICKKGGHRAKDCPDKHKSGF 246
GH++ +C + C CG+++ + +C + C C GH A C + K G
Sbjct: 96 GNGHISKDCPHVL-----CTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRKRG- 149
Query: 247 QNAQVCLKCGDSGHDMFSC 265
+VC C H +C
Sbjct: 150 --PRVCRTCHTDTHTSSTC 166
>UNIPROTKB|P20892 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11699 "Human
immunodeficiency virus type 1 (OYI ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0005198 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0046718 GO:GO:0020002 GO:GO:0006310
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964 GO:GO:0006278
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0004190
Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630 GO:GO:0004523
GO:GO:0015074 GO:GO:0075713 GO:GO:0042025 GO:GO:0003887
GO:GO:0019028 EMBL:M26727 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0019061 GO:GO:0075732 Gene3D:1.10.10.200 InterPro:IPR017856
SUPFAM:SSF50122 SUPFAM:SSF46919 InterPro:IPR018061 Pfam:PF00077
GO:GO:0004533 GO:GO:0039651 GO:GO:0046797 Gene3D:2.30.30.10
ProteinModelPortal:P20892 SMR:P20892 Uniprot:P20892
Length = 1434
Score = 122 (48.0 bits), Expect = 0.00030, P = 0.00030
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 391 CFNCGKEGHIAKNCRAP--RKKGCWKCGREGHQMKDCTERQANFL 433
>UNIPROTKB|P04589 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11689 "Human
immunodeficiency virus type 1 (ELI ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0005198 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0046718 GO:GO:0020002 GO:GO:0006310
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964 GO:GO:0006278
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0004190
Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630 GO:GO:0004523
GO:GO:0015074 GO:GO:0075713 GO:GO:0042025 GO:GO:0003887
GO:GO:0019028 EMBL:K03454 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0019061 GO:GO:0075732 Gene3D:1.10.10.200 InterPro:IPR017856
SUPFAM:SSF50122 SUPFAM:SSF46919 InterPro:IPR018061 Pfam:PF00077
GO:GO:0004533 GO:GO:0039651 GO:GO:0046797 Gene3D:2.30.30.10
ProteinModelPortal:P04589 SMR:P04589 Uniprot:P04589
Length = 1435
Score = 122 (48.0 bits), Expect = 0.00030, P = 0.00030
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 393 CFNCGKEGHIAKNCRAP--RKKGCWRCGKEGHQLKDCTERQANFL 435
>UNIPROTKB|P03367 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11686 "Human
immunodeficiency virus type 1 (BRU ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0005198 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0046718 GO:GO:0020002 GO:GO:0006310
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964 GO:GO:0006278
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0004190
Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630 GO:GO:0004523
GO:GO:0015074 GO:GO:0075713 GO:GO:0042025 GO:GO:0003887
GO:GO:0019028 EMBL:K02013 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0019061 GO:GO:0075732 Gene3D:1.10.10.200 InterPro:IPR017856
SUPFAM:SSF50122 SUPFAM:SSF46919 InterPro:IPR018061 Pfam:PF00077
GO:GO:0004533 GO:GO:0039651 GO:GO:0046797 Gene3D:2.30.30.10
PDB:1HNI PDBsum:1HNI PDB:1A8G PDB:1A8K PDB:1A94 PDB:1AAQ PDB:1D4S
PDB:1D4Y PDB:1DAZ PDB:1DIF PDB:1FQX PDB:1HHP PDB:1HPO PDB:1HPX
PDB:1HSG PDB:1HVL PDB:1IIQ PDB:1IZI PDB:1LZQ PDB:1M0B PDB:1MRW
PDB:1MRX PDB:1MSM PDB:1MSN PDB:1NH0 PDB:1RL8 PDB:1SDT PDB:1SDU
PDB:1SDV PDB:1SGU PDB:1SH9 PDB:1SP5 PDB:1U8G PDB:1UPJ PDB:1XL2
PDB:1XL5 PDB:1Z8C PDB:1ZBG PDB:1ZJ7 PDB:1ZLF PDB:1ZPK PDB:1ZTZ
PDB:2A1E PDB:2AZ8 PDB:2AZ9 PDB:2AZB PDB:2AZC PDB:2B7Z PDB:2BB9
PDB:2FDE PDB:2FND PDB:2HB2 PDB:2HB4 PDB:2HC0 PDB:2IEN PDB:2O4K
PDB:2O4L PDB:2O4N PDB:2O4P PDB:2O4S PDB:2P3B PDB:2PK5 PDB:2PK6
PDB:2PQZ PDB:2PWC PDB:2PWR PDB:2PYM PDB:2PYN PDB:2Q63 PDB:2Q64
PDB:2QAK PDB:2QCI PDB:2QD6 PDB:2QD7 PDB:2QD8 PDB:2QHC PDB:2QNN
PDB:2QNP PDB:2QNQ PDB:2R43 PDB:2UPJ PDB:2Z4O PDB:2ZGA PDB:2ZYE
PDB:3A2O PDB:3BHE PDB:3BVA PDB:3BVB PDB:3CKT PDB:3DJK PDB:3DK1
PDB:3FX5 PDB:3GGU PDB:3H5B PDB:3I6O PDB:3I8W PDB:3JVW PDB:3JVY
PDB:3JW2 PDB:3KDB PDB:3KDC PDB:3KDD PDB:3NDU PDB:3NDW PDB:3NDX
PDB:3NLS PDB:3PWM PDB:3PWR PDB:3QBF PDB:3QIH PDB:3QN8 PDB:3QOZ
PDB:3QP0 PDB:3QPJ PDB:3QRM PDB:3QRO PDB:3QRS PDB:3ST5 PDB:3T11
PDB:3T3C PDB:3TOF PDB:3TOG PDB:3TOH PDB:3TTP PDB:3U7S PDB:3UCB
PDB:3UF3 PDB:3UFN PDB:3UHL PDB:3VF5 PDB:3VF7 PDB:3VFB PDB:4DFG
PDB:4FAF PDB:4FE6 PDB:4FL8 PDB:4FLG PDB:4FM6 PDB:7UPJ PDBsum:1A8G
PDBsum:1A8K PDBsum:1A94 PDBsum:1AAQ PDBsum:1D4S PDBsum:1D4Y
PDBsum:1DAZ PDBsum:1DIF PDBsum:1FQX PDBsum:1HHP PDBsum:1HPO
PDBsum:1HPX PDBsum:1HSG PDBsum:1HVL PDBsum:1IIQ PDBsum:1IZI
PDBsum:1LZQ PDBsum:1M0B PDBsum:1MRW PDBsum:1MRX PDBsum:1MSM
PDBsum:1MSN PDBsum:1NH0 PDBsum:1RL8 PDBsum:1SDT PDBsum:1SDU
PDBsum:1SDV PDBsum:1SGU PDBsum:1SH9 PDBsum:1SP5 PDBsum:1U8G
PDBsum:1UPJ PDBsum:1XL2 PDBsum:1XL5 PDBsum:1Z8C PDBsum:1ZBG
PDBsum:1ZJ7 PDBsum:1ZLF PDBsum:1ZPK PDBsum:1ZTZ PDBsum:2A1E
PDBsum:2AZ8 PDBsum:2AZ9 PDBsum:2AZB PDBsum:2AZC PDBsum:2B7Z
PDBsum:2BB9 PDBsum:2FDE PDBsum:2FND PDBsum:2HB2 PDBsum:2HB4
PDBsum:2HC0 PDBsum:2IEN PDBsum:2O4K PDBsum:2O4L PDBsum:2O4N
PDBsum:2O4P PDBsum:2O4S PDBsum:2P3B PDBsum:2PK5 PDBsum:2PK6
PDBsum:2PQZ PDBsum:2PWC PDBsum:2PWR PDBsum:2PYM PDBsum:2PYN
PDBsum:2Q63 PDBsum:2Q64 PDBsum:2QAK PDBsum:2QCI PDBsum:2QD6
PDBsum:2QD7 PDBsum:2QD8 PDBsum:2QHC PDBsum:2QNN PDBsum:2QNP
PDBsum:2QNQ PDBsum:2R43 PDBsum:2UPJ PDBsum:2Z4O PDBsum:2ZGA
PDBsum:2ZYE PDBsum:3A2O PDBsum:3BHE PDBsum:3BVA PDBsum:3BVB
PDBsum:3CKT PDBsum:3DJK PDBsum:3DK1 PDBsum:3FX5 PDBsum:3GGU
PDBsum:3H5B PDBsum:3I6O PDBsum:3I8W PDBsum:3JVW PDBsum:3JVY
PDBsum:3JW2 PDBsum:3KDB PDBsum:3KDC PDBsum:3KDD PDBsum:3NDU
PDBsum:3NDW PDBsum:3NDX PDBsum:3NLS PDBsum:3PWM PDBsum:3PWR
PDBsum:3QBF PDBsum:3QIH PDBsum:3QN8 PDBsum:3QOZ PDBsum:3QP0
PDBsum:3QPJ PDBsum:3QRM PDBsum:3QRO PDBsum:3QRS PDBsum:3ST5
PDBsum:3T11 PDBsum:3T3C PDBsum:3TOF PDBsum:3TOG PDBsum:3TOH
PDBsum:3TTP PDBsum:3U7S PDBsum:3UCB PDBsum:3UF3 PDBsum:3UFN
PDBsum:3UHL PDBsum:3VF5 PDBsum:3VF7 PDBsum:3VFB PDBsum:4DFG
PDBsum:4FAF PDBsum:4FE6 PDBsum:4FL8 PDBsum:4FLG PDBsum:4FM6
PDBsum:7UPJ ProteinModelPortal:P03367 SMR:P03367
EvolutionaryTrace:P03367 Uniprot:P03367
Length = 1447
Score = 122 (48.0 bits), Expect = 0.00030, P = 0.00030
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 392 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFL 434
>UNIPROTKB|P03369 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11685 "HIV-1
M:B_ARV2/SF2" [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006278 "RNA-dependent DNA replication"
evidence=TAS] [GO:0016032 "viral reproduction" evidence=TAS]
[GO:0019061 "uncoating of virus" evidence=TAS] [GO:0030260 "entry
into host cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0005198 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0046718 GO:GO:0020002 GO:GO:0006310
GO:GO:0090305 DrugBank:DB01048 SUPFAM:SSF53098 GO:GO:0003964
GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260
GO:GO:0004190 Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630
GO:GO:0004523 GO:GO:0015074 GO:GO:0075713 GO:GO:0042025
GO:GO:0003887 DrugBank:DB00625 DrugBank:DB00238 DrugBank:DB00705
DrugBank:DB00943 GO:GO:0019028 EMBL:K02007 Gene3D:1.10.1200.30
Gene3D:1.10.150.90 Gene3D:1.10.375.10 SUPFAM:SSF47353
SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0019061 PDB:1TSQ PDB:1TSU
PDBsum:1TSQ PDBsum:1TSU GO:GO:0075732 Gene3D:1.10.10.200
InterPro:IPR017856 SUPFAM:SSF50122 SUPFAM:SSF46919
InterPro:IPR018061 Pfam:PF00077 PIR:A03968 PDB:1AID PDB:1B6J
PDB:1B6K PDB:1B6L PDB:1B6M PDB:1B6P PDB:1CPI PDB:1D4K PDB:1D4L
PDB:1F7A PDB:1KJ4 PDB:1KJ7 PDB:1KJF PDB:1KJG PDB:1KJH PDB:1KZK
PDB:1MT7 PDB:1MT8 PDB:1MT9 PDB:1MTB PDB:1MTR PDB:1N49 PDB:1T3R
PDB:1YTG PDB:1YTH PDB:1Z1H PDB:1Z1R PDB:2AID PDB:2F3K PDB:2FGU
PDB:2FGV PDB:2FNS PDB:2FNT PDB:2J9J PDB:2J9K PDB:2JE4 PDB:2NXD
PDB:2NXL PDB:2NXM PDB:2Q3K PDB:2QHY PDB:2QHZ PDB:2QI0 PDB:2QI1
PDB:2QI3 PDB:2QI4 PDB:2QI5 PDB:2QI6 PDB:2QI7 PDB:3AID PDB:3BXR
PDB:3BXS PDB:3EKP PDB:3EKQ PDB:3EKT PDB:3EKV PDB:3EKW PDB:3EKX
PDB:3EKY PDB:3EL0 PDB:3EL1 PDB:3EL4 PDB:3EL5 PDB:3EL9 PDB:3EM3
PDB:3EM4 PDB:3EM6 PDB:3GI0 PDB:3GI4 PDB:3GI5 PDB:3GI6 PDB:3HAU
PDB:3HAW PDB:3HVP PDB:3HZC PDB:3I2L PDB:3I7E PDB:3IAW PDB:3KA2
PDB:3LZV PDB:3MXD PDB:3MXE PDB:3O9F PDB:3O9G PDB:3O9H PDB:3O9I
PDB:3OXV PDB:3OXW PDB:3OXX PDB:3OY4 PDB:3R4B PDB:4EP2 PDB:4EP3
PDB:4EPJ PDB:4EQ0 PDB:4EQJ PDB:4HVP PDB:7HVP PDB:8HVP PDBsum:1AID
PDBsum:1B6J PDBsum:1B6K PDBsum:1B6L PDBsum:1B6M PDBsum:1B6P
PDBsum:1CPI PDBsum:1D4K PDBsum:1D4L PDBsum:1F7A PDBsum:1KJ4
PDBsum:1KJ7 PDBsum:1KJF PDBsum:1KJG PDBsum:1KJH PDBsum:1KZK
PDBsum:1MT7 PDBsum:1MT8 PDBsum:1MT9 PDBsum:1MTB PDBsum:1MTR
PDBsum:1N49 PDBsum:1T3R PDBsum:1YTG PDBsum:1YTH PDBsum:1Z1H
PDBsum:1Z1R PDBsum:2AID PDBsum:2F3K PDBsum:2FGU PDBsum:2FGV
PDBsum:2FNS PDBsum:2FNT PDBsum:2J9J PDBsum:2J9K PDBsum:2JE4
PDBsum:2NXD PDBsum:2NXL PDBsum:2NXM PDBsum:2Q3K PDBsum:2QHY
PDBsum:2QHZ PDBsum:2QI0 PDBsum:2QI1 PDBsum:2QI3 PDBsum:2QI4
PDBsum:2QI5 PDBsum:2QI6 PDBsum:2QI7 PDBsum:3AID PDBsum:3BXR
PDBsum:3BXS PDBsum:3EKP PDBsum:3EKQ PDBsum:3EKT PDBsum:3EKV
PDBsum:3EKW PDBsum:3EKX PDBsum:3EKY PDBsum:3EL0 PDBsum:3EL1
PDBsum:3EL4 PDBsum:3EL5 PDBsum:3EL9 PDBsum:3EM3 PDBsum:3EM4
PDBsum:3EM6 PDBsum:3GI0 PDBsum:3GI4 PDBsum:3GI5 PDBsum:3GI6
PDBsum:3HAU PDBsum:3HAW PDBsum:3HVP PDBsum:3HZC PDBsum:3I2L
PDBsum:3I7E PDBsum:3IAW PDBsum:3KA2 PDBsum:3LZV PDBsum:3MXD
PDBsum:3MXE PDBsum:3O9F PDBsum:3O9G PDBsum:3O9H PDBsum:3O9I
PDBsum:3OXV PDBsum:3OXW PDBsum:3OXX PDBsum:3OY4 PDBsum:3R4B
PDBsum:4EP2 PDBsum:4EP3 PDBsum:4EPJ PDBsum:4EQ0 PDBsum:4EQJ
PDBsum:4HVP PDBsum:7HVP PDBsum:8HVP ProteinModelPortal:P03369
SMR:P03369 BRENDA:3.4.23.16 DrugBank:DB00900 DrugBank:DB00879
DrugBank:DB00709 DrugBank:DB00649 DrugBank:DB00300 DrugBank:DB00495
EvolutionaryTrace:P03369 GO:GO:0004533 GO:GO:0039651 GO:GO:0046797
Gene3D:2.30.30.10 Uniprot:P03369
Length = 1437
Score = 121 (47.7 bits), Expect = 0.00039, P = 0.00039
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 394 CFNCGKEGHIAKNCRAP--RKKGCWRCGREGHQMKDCTERQANFL 436
>UNIPROTKB|P18802 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11695 "Human
immunodeficiency virus type 1 (NDK ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0005198 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0046718 GO:GO:0020002 GO:GO:0006310
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964 GO:GO:0006278
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0004190
Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630 GO:GO:0004523
GO:GO:0015074 GO:GO:0075713 GO:GO:0042025 GO:GO:0003887
GO:GO:0019028 EMBL:M27323 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0019061 GO:GO:0075732 Gene3D:1.10.10.200 InterPro:IPR017856
SUPFAM:SSF50122 SUPFAM:SSF46919 InterPro:IPR018061 Pfam:PF00077
GO:GO:0004533 GO:GO:0039651 GO:GO:0046797 Gene3D:2.30.30.10
PIR:JQ0067 PDB:1EQI PDBsum:1EQI ProteinModelPortal:P18802
SMR:P18802 Uniprot:P18802
Length = 1432
Score = 120 (47.3 bits), Expect = 0.00051, P = 0.00051
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 390 CFNCGKEGHTAKNCRAP--RKKGCWKCGREGHQMKDCTERQANFL 432
>UNIPROTKB|P04585 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11706 "HIV-1
M:B_HXB2R" [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006278 "RNA-dependent DNA replication"
evidence=TAS] [GO:0016032 "viral reproduction" evidence=TAS]
[GO:0019061 "uncoating of virus" evidence=TAS] [GO:0030260 "entry
into host cell" evidence=TAS] [GO:0042802 "identical protein
binding" evidence=IPI] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0005198 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0046718 GO:GO:0020002 GO:GO:0006310
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964 GO:GO:0006278
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0004190
Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630 GO:GO:0004523
GO:GO:0015074 GO:GO:0075713 GO:GO:0042025 GO:GO:0003887
GO:GO:0019028 EMBL:K03455 EMBL:AF033819 Gene3D:1.10.1200.30
Gene3D:1.10.150.90 Gene3D:1.10.375.10 SUPFAM:SSF47353
SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0019061 PDB:1NCP PDBsum:1NCP
GO:GO:0075732 Gene3D:1.10.10.200 InterPro:IPR017856 SUPFAM:SSF50122
SUPFAM:SSF46919 InterPro:IPR018061 Pfam:PF00077 GO:GO:0004533
GO:GO:0039651 GO:GO:0046797 Gene3D:2.30.30.10 PDB:1RTD PDB:1T05
PDB:2HNZ PDBsum:1RTD PDBsum:1T05 PDBsum:2HNZ RefSeq:NP_057849.4
PDB:1A30 PDB:1BV7 PDB:1BV9 PDB:1BVE PDB:1BVG PDB:1BWA PDB:1BWB
PDB:1C0T PDB:1C0U PDB:1C1B PDB:1C1C PDB:1DMP PDB:1DTQ PDB:1DTT
PDB:1E6J PDB:1EP4 PDB:1ESK PDB:1EX4 PDB:1EXQ PDB:1FB7 PDB:1FK9
PDB:1FKO PDB:1FKP PDB:1G6L PDB:1HIV PDB:1HVH PDB:1HVR PDB:1HWR
PDB:1HXB PDB:1JKH PDB:1JLA PDB:1JLB PDB:1JLC PDB:1JLE PDB:1JLF
PDB:1JLG PDB:1JLQ PDB:1KLM PDB:1LV1 PDB:1LW0 PDB:1LW2 PDB:1LWC
PDB:1LWE PDB:1LWF PDB:1O1W PDB:1ODW PDB:1ODY PDB:1QBR PDB:1QBS
PDB:1QBT PDB:1QBU PDB:1REV PDB:1RT1 PDB:1RT2 PDB:1RT3 PDB:1RT4
PDB:1RT5 PDB:1RT6 PDB:1RT7 PDB:1RTH PDB:1RTI PDB:1RTJ PDB:1S1T
PDB:1S1U PDB:1S1V PDB:1S1W PDB:1S1X PDB:1TAM PDB:1TKT PDB:1TKX
PDB:1TKZ PDB:1TL1 PDB:1TL3 PDB:1VRT PDB:1VRU PDB:2HND PDB:2HNY
PDB:2KOD PDB:2NPH PDB:2OPP PDB:2OPQ PDB:2OPR PDB:2OPS PDB:2RF2
PDB:2RKI PDB:2WHH PDB:2WOM PDB:2WON PDB:2YNF PDB:2YNG PDB:2YNH
PDB:2YNI PDB:3AO2 PDB:3C6T PDB:3C6U PDB:3DI6 PDB:3DLE PDB:3DLG
PDB:3DM2 PDB:3DMJ PDB:3DOK PDB:3DOL PDB:3DOX PDB:3DRP PDB:3DRR
PDB:3DRS PDB:3DYA PDB:3E01 PDB:3FFI PDB:3I0R PDB:3I0S PDB:3KJV
PDB:3KK1 PDB:3KK2 PDB:3KK3 PDB:3KT2 PDB:3KT5 PDB:3LAK PDB:3LAL
PDB:3LAM PDB:3LAN PDB:3LP0 PDB:3LP1 PDB:3LP2 PDB:3M8P PDB:3M8Q
PDB:3MEC PDB:3MED PDB:3MEE PDB:3MEG PDB:3MIM PDB:3N3I PDB:3NBP
PDB:3PHV PDB:3QIN PDB:3QIO PDB:3QIP PDB:3T19 PDB:3T1A PDB:3TAM
PDB:4B3O PDB:4B3P PDB:4B3Q PDBsum:1A30 PDBsum:1BV7 PDBsum:1BV9
PDBsum:1BVE PDBsum:1BVG PDBsum:1BWA PDBsum:1BWB PDBsum:1C0T
PDBsum:1C0U PDBsum:1C1B PDBsum:1C1C PDBsum:1DMP PDBsum:1DTQ
PDBsum:1DTT PDBsum:1E6J PDBsum:1EP4 PDBsum:1ESK PDBsum:1EX4
PDBsum:1EXQ PDBsum:1FB7 PDBsum:1FK9 PDBsum:1FKO PDBsum:1FKP
PDBsum:1G6L PDBsum:1HIV PDBsum:1HVH PDBsum:1HVR PDBsum:1HWR
PDBsum:1HXB PDBsum:1JKH PDBsum:1JLA PDBsum:1JLB PDBsum:1JLC
PDBsum:1JLE PDBsum:1JLF PDBsum:1JLG PDBsum:1JLQ PDBsum:1KLM
PDBsum:1LV1 PDBsum:1LW0 PDBsum:1LW2 PDBsum:1LWC PDBsum:1LWE
PDBsum:1LWF PDBsum:1O1W PDBsum:1ODW PDBsum:1ODY PDBsum:1QBR
PDBsum:1QBS PDBsum:1QBT PDBsum:1QBU PDBsum:1REV PDBsum:1RT1
PDBsum:1RT2 PDBsum:1RT3 PDBsum:1RT4 PDBsum:1RT5 PDBsum:1RT6
PDBsum:1RT7 PDBsum:1RTH PDBsum:1RTI PDBsum:1RTJ PDBsum:1S1T
PDBsum:1S1U PDBsum:1S1V PDBsum:1S1W PDBsum:1S1X PDBsum:1TAM
PDBsum:1TKT PDBsum:1TKX PDBsum:1TKZ PDBsum:1TL1 PDBsum:1TL3
PDBsum:1VRT PDBsum:1VRU PDBsum:2HND PDBsum:2HNY PDBsum:2KOD
PDBsum:2NPH PDBsum:2OPP PDBsum:2OPQ PDBsum:2OPR PDBsum:2OPS
PDBsum:2RF2 PDBsum:2RKI PDBsum:2WHH PDBsum:2WOM PDBsum:2WON
PDBsum:2YNF PDBsum:2YNG PDBsum:2YNH PDBsum:2YNI PDBsum:3AO2
PDBsum:3C6T PDBsum:3C6U PDBsum:3DI6 PDBsum:3DLE PDBsum:3DLG
PDBsum:3DM2 PDBsum:3DMJ PDBsum:3DOK PDBsum:3DOL PDBsum:3DOX
PDBsum:3DRP PDBsum:3DRR PDBsum:3DRS PDBsum:3DYA PDBsum:3E01
PDBsum:3FFI PDBsum:3I0R PDBsum:3I0S PDBsum:3KJV PDBsum:3KK1
PDBsum:3KK2 PDBsum:3KK3 PDBsum:3KT2 PDBsum:3KT5 PDBsum:3LAK
PDBsum:3LAL PDBsum:3LAM PDBsum:3LAN PDBsum:3LP0 PDBsum:3LP1
PDBsum:3LP2 PDBsum:3M8P PDBsum:3M8Q PDBsum:3MEC PDBsum:3MED
PDBsum:3MEE PDBsum:3MEG PDBsum:3MIM PDBsum:3N3I PDBsum:3NBP
PDBsum:3PHV PDBsum:3QIN PDBsum:3QIO PDBsum:3QIP PDBsum:3T19
PDBsum:3T1A PDBsum:3TAM PDBsum:4B3O PDBsum:4B3P PDBsum:4B3Q
ProteinModelPortal:P04585 SMR:P04585 MINT:MINT-111862
SABIO-RK:P04585 EvolutionaryTrace:P04585 Uniprot:P04585
Length = 1435
Score = 120 (47.3 bits), Expect = 0.00051, P = 0.00051
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 392 CFNCGKEGHTARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFL 434
>UNIPROTKB|P12499 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11683 "Human
immunodeficiency virus type 1 (Z2/CDC-Z34 ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 PDB:1Q94 PDBsum:1Q94 PDB:1E28
PDBsum:1E28 GO:GO:0016020 GO:GO:0046872 GO:GO:0003677 GO:GO:0005198
GO:GO:0008270 GO:GO:0006508 GO:GO:0003723 GO:GO:0046718
GO:GO:0020002 GO:GO:0006310 GO:GO:0090305 SUPFAM:SSF53098
GO:GO:0003964 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0004190 Gene3D:2.40.70.10 InterPro:IPR021109
SUPFAM:SSF50630 GO:GO:0004523 GO:GO:0015074 GO:GO:0075713
GO:GO:0042025 GO:GO:0003887 GO:GO:0019028 EMBL:M22639
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0019061
GO:GO:0075732 Gene3D:1.10.10.200 InterPro:IPR017856 SUPFAM:SSF50122
SUPFAM:SSF46919 InterPro:IPR018061 Pfam:PF00077 GO:GO:0004533
GO:GO:0039651 GO:GO:0046797 Gene3D:2.30.30.10 PIR:S54378 PDB:1HXW
PDB:1PRO PDB:1VIJ PDB:1VIK PDB:2WKZ PDB:2WL0 PDB:2XYE PDB:2XYF
PDB:3KF0 PDB:3KFN PDB:3KFP PDB:3KFR PDB:3KFS PDB:4DQB PDB:4DQC
PDB:4DQE PDB:4DQF PDB:4DQG PDB:4DQH PDB:4E43 PDBsum:1HXW
PDBsum:1PRO PDBsum:1VIJ PDBsum:1VIK PDBsum:2WKZ PDBsum:2WL0
PDBsum:2XYE PDBsum:2XYF PDBsum:3KF0 PDBsum:3KFN PDBsum:3KFP
PDBsum:3KFR PDBsum:3KFS PDBsum:4DQB PDBsum:4DQC PDBsum:4DQE
PDBsum:4DQF PDBsum:4DQG PDBsum:4DQH PDBsum:4E43
ProteinModelPortal:P12499 SMR:P12499 EvolutionaryTrace:P12499
Uniprot:P12499
Length = 1436
Score = 120 (47.3 bits), Expect = 0.00051, P = 0.00051
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ R+K C+ CG H ++ C++ Q F+
Sbjct: 394 CFNCGKEGHIAKNCRAP--RRKGCWKCGKEGHQLKDCTERQANFL 436
>UNIPROTKB|P05961 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11696 "HIV-1
M:B_MN" [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006278 "RNA-dependent DNA replication"
evidence=TAS] [GO:0016032 "viral reproduction" evidence=TAS]
[GO:0019061 "uncoating of virus" evidence=TAS] [GO:0030260 "entry
into host cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0005198 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0046718 GO:GO:0020002 GO:GO:0006310
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964 GO:GO:0006278
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0004190
Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630 GO:GO:0004523
GO:GO:0015074 GO:GO:0075713 GO:GO:0042025 GO:GO:0003887
GO:GO:0019028 EMBL:M17449 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0019061 PDB:1AAF PDBsum:1AAF GO:GO:0075732 Gene3D:1.10.10.200
InterPro:IPR017856 SUPFAM:SSF50122 SUPFAM:SSF46919
InterPro:IPR018061 Pfam:PF00077 GO:GO:0004533 GO:GO:0039651
GO:GO:0046797 Gene3D:2.30.30.10 ProteinModelPortal:P05961
SMR:P05961 EvolutionaryTrace:P05961 Uniprot:P05961
Length = 1441
Score = 120 (47.3 bits), Expect = 0.00051, P = 0.00051
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RK+ C+ CG H ++ C++ Q F+
Sbjct: 395 CFNCGKEGHIAKNCRAP--RKRGCWKCGKEGHQMKDCTERQANFL 437
>UNIPROTKB|P03366 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11678 "Human
immunodeficiency virus type 1 BH10" [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006278
"RNA-dependent DNA replication" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000477 InterPro:IPR000721
InterPro:IPR001037 InterPro:IPR001584 InterPro:IPR001878
InterPro:IPR001969 InterPro:IPR001995 InterPro:IPR002156
InterPro:IPR003308 InterPro:IPR008916 InterPro:IPR008919
InterPro:IPR010659 InterPro:IPR010661 InterPro:IPR010999
InterPro:IPR012337 InterPro:IPR012344 Pfam:PF00075 Pfam:PF00078
Pfam:PF00098 Pfam:PF00540 Pfam:PF00552 Pfam:PF00607 Pfam:PF00665
Pfam:PF02022 Pfam:PF06815 Pfam:PF06817 PRINTS:PR00234
PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175 PROSITE:PS50876
PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994 PROSITE:PS51027
SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0030430 PDB:2X4U PDBsum:2X4U GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0005198 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0046718 GO:GO:0020002 GO:GO:0006310
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964 GO:GO:0006278
Gene3D:4.10.60.10 SUPFAM:SSF57756 DrugBank:DB01093 GO:GO:0030260
GO:GO:0004190 Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630
GO:GO:0004523 GO:GO:0015074 GO:GO:0075713 GO:GO:0042025
GO:GO:0003887 DrugBank:DB01264 DrugBank:DB01601 GO:GO:0019028
EMBL:M15654 EMBL:K02083 EMBL:X01762 Gene3D:1.10.1200.30
Gene3D:1.10.150.90 Gene3D:1.10.375.10 SUPFAM:SSF47353
SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0019061 GO:GO:0075732
Gene3D:1.10.10.200 InterPro:IPR017856 SUPFAM:SSF50122
SUPFAM:SSF46919 InterPro:IPR018061 Pfam:PF00077 PDB:1KJH
PDBsum:1KJH GO:GO:0004533 GO:GO:0039651 GO:GO:0046797
Gene3D:2.30.30.10 PIR:A03965 PIR:A03967 PDB:1A9M PDB:1AJV PDB:1AJX
PDB:1AXA PDB:1BQM PDB:1BQN PDB:1D4H PDB:1D4I PDB:1D4J PDB:1DLO
PDB:1DW6 PDB:1EBK PDB:1EBW PDB:1EBY PDB:1EBZ PDB:1EC0 PDB:1EC1
PDB:1EC2 PDB:1EC3 PDB:1EET PDB:1G35 PDB:1GNM PDB:1GNN PDB:1GNO
PDB:1HAR PDB:1HBV PDB:1HEF PDB:1HEG PDB:1HIH PDB:1HMV PDB:1HNI
PDB:1HNV PDB:1HOS PDB:1HPS PDB:1HPZ PDB:1HQE PDB:1HQU PDB:1HRH
PDB:1HTE PDB:1HTF PDB:1HTG PDB:1HVI PDB:1HVK PDB:1HVP PDB:1HVU
PDB:1HYS PDB:1IKV PDB:1IKW PDB:1IKX PDB:1IKY PDB:1J5O PDB:1MER
PDB:1MES PDB:1MET PDB:1MEU PDB:1N5Y PDB:1N6Q PDB:1NPA PDB:1NPV
PDB:1NPW PDB:1QE1 PDB:1QMC PDB:1R0A PDB:1RDH PDB:1RTD PDB:1RVL
PDB:1RVM PDB:1RVN PDB:1RVO PDB:1RVP PDB:1RVQ PDB:1RVR PDB:1S6P
PDB:1S6Q PDB:1S9E PDB:1S9G PDB:1SBG PDB:1SUQ PDB:1SV5 PDB:1T03
PDB:1T05 PDB:1T7K PDB:1TV6 PDB:1TVR PDB:1UWB PDB:1W5V PDB:1W5W
PDB:1W5X PDB:1W5Y PDB:1YT9 PDB:1ZP8 PDB:1ZPA PDB:1ZSF PDB:1ZSR
PDB:2AQU PDB:2B5J PDB:2B6A PDB:2BAN PDB:2BBB PDB:2BE2 PDB:2EXF
PDB:2G69 PDB:2HB3 PDB:2HMI PDB:2HNZ PDB:2HS1 PDB:2HS2 PDB:2I4D
PDB:2I4U PDB:2I4V PDB:2I4W PDB:2I4X PDB:2I5J PDB:2IAJ PDB:2IC3
PDB:2IDW PDB:2IEO PDB:2L45 PDB:2L46 PDB:2L4L PDB:2UXZ PDB:2UY0
PDB:2VG5 PDB:2VG6 PDB:2VG7 PDB:2YKM PDB:2YKN PDB:2ZD1 PDB:2ZE2
PDB:3AVI PDB:3BGR PDB:3DLK PDB:3GGA PDB:3GGV PDB:3GGX PDB:3HVT
PDB:3IG1 PDB:3IRX PDB:3IS9 PDB:3ISN PDB:3ITH PDB:3JSM PDB:3JYT
PDB:3K2P PDB:3K4V PDB:3KLE PDB:3KLF PDB:3KLG PDB:3KLH PDB:3KLI
PDB:3NDT PDB:3NU3 PDB:3NU4 PDB:3NU5 PDB:3NU6 PDB:3NU9 PDB:3NUJ
PDB:3NUO PDB:3OK9 PDB:3PSU PDB:3QAA PDB:3QLH PDB:3QO9 PDB:3TKG
PDB:3TKW PDB:3TL9 PDB:3TLH PDB:3V4I PDB:3V6D PDB:3V81 PDB:4DG1
PDB:4H4M PDB:4H4O PDB:4I2P PDB:4I2Q PDBsum:1A9M PDBsum:1AJV
PDBsum:1AJX PDBsum:1AXA PDBsum:1BQM PDBsum:1BQN PDBsum:1D4H
PDBsum:1D4I PDBsum:1D4J PDBsum:1DLO PDBsum:1DW6 PDBsum:1EBK
PDBsum:1EBW PDBsum:1EBY PDBsum:1EBZ PDBsum:1EC0 PDBsum:1EC1
PDBsum:1EC2 PDBsum:1EC3 PDBsum:1EET PDBsum:1G35 PDBsum:1GNM
PDBsum:1GNN PDBsum:1GNO PDBsum:1HAR PDBsum:1HBV PDBsum:1HEF
PDBsum:1HEG PDBsum:1HIH PDBsum:1HMV PDBsum:1HNI PDBsum:1HNV
PDBsum:1HOS PDBsum:1HPS PDBsum:1HPZ PDBsum:1HQE PDBsum:1HQU
PDBsum:1HRH PDBsum:1HTE PDBsum:1HTF PDBsum:1HTG PDBsum:1HVI
PDBsum:1HVK PDBsum:1HVP PDBsum:1HVU PDBsum:1HYS PDBsum:1IKV
PDBsum:1IKW PDBsum:1IKX PDBsum:1IKY PDBsum:1J5O PDBsum:1MER
PDBsum:1MES PDBsum:1MET PDBsum:1MEU PDBsum:1N5Y PDBsum:1N6Q
PDBsum:1NPA PDBsum:1NPV PDBsum:1NPW PDBsum:1QE1 PDBsum:1QMC
PDBsum:1R0A PDBsum:1RDH PDBsum:1RTD PDBsum:1RVL PDBsum:1RVM
PDBsum:1RVN PDBsum:1RVO PDBsum:1RVP PDBsum:1RVQ PDBsum:1RVR
PDBsum:1S6P PDBsum:1S6Q PDBsum:1S9E PDBsum:1S9G PDBsum:1SBG
PDBsum:1SUQ PDBsum:1SV5 PDBsum:1T03 PDBsum:1T05 PDBsum:1T7K
PDBsum:1TV6 PDBsum:1TVR PDBsum:1UWB PDBsum:1W5V PDBsum:1W5W
PDBsum:1W5X PDBsum:1W5Y PDBsum:1YT9 PDBsum:1ZP8 PDBsum:1ZPA
PDBsum:1ZSF PDBsum:1ZSR PDBsum:2AQU PDBsum:2B5J PDBsum:2B6A
PDBsum:2BAN PDBsum:2BBB PDBsum:2BE2 PDBsum:2EXF PDBsum:2G69
PDBsum:2HB3 PDBsum:2HMI PDBsum:2HNZ PDBsum:2HS1 PDBsum:2HS2
PDBsum:2I4D PDBsum:2I4U PDBsum:2I4V PDBsum:2I4W PDBsum:2I4X
PDBsum:2I5J PDBsum:2IAJ PDBsum:2IC3 PDBsum:2IDW PDBsum:2IEO
PDBsum:2L45 PDBsum:2L46 PDBsum:2L4L PDBsum:2UXZ PDBsum:2UY0
PDBsum:2VG5 PDBsum:2VG6 PDBsum:2VG7 PDBsum:2YKM PDBsum:2YKN
PDBsum:2ZD1 PDBsum:2ZE2 PDBsum:3AVI PDBsum:3BGR PDBsum:3DLK
PDBsum:3GGA PDBsum:3GGV PDBsum:3GGX PDBsum:3HVT PDBsum:3IG1
PDBsum:3IRX PDBsum:3IS9 PDBsum:3ISN PDBsum:3ITH PDBsum:3JSM
PDBsum:3JYT PDBsum:3K2P PDBsum:3K4V PDBsum:3KLE PDBsum:3KLF
PDBsum:3KLG PDBsum:3KLH PDBsum:3KLI PDBsum:3NDT PDBsum:3NU3
PDBsum:3NU4 PDBsum:3NU5 PDBsum:3NU6 PDBsum:3NU9 PDBsum:3NUJ
PDBsum:3NUO PDBsum:3OK9 PDBsum:3PSU PDBsum:3QAA PDBsum:3QLH
PDBsum:3QO9 PDBsum:3TKG PDBsum:3TKW PDBsum:3TL9 PDBsum:3TLH
PDBsum:3V4I PDBsum:3V6D PDBsum:3V81 PDBsum:4DG1 PDBsum:4H4M
PDBsum:4H4O PDBsum:4I2P PDBsum:4I2Q ProteinModelPortal:P03366
SMR:P03366 IntAct:P03366 MINT:MINT-111903 SABIO-RK:P03366
ChEMBL:CHEMBL5823 EvolutionaryTrace:P03366 Uniprot:P03366
Length = 1447
Score = 120 (47.3 bits), Expect = 0.00051, P = 0.00051
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 392 CFNCGKEGHTARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFL 434
>CGD|CAL0005378 [details] [associations]
symbol:orf19.4844 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0031499 "TRAMP complex" evidence=IEA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IEA] [GO:0071037 "nuclear
polyadenylation-dependent snRNA catabolic process" evidence=IEA]
[GO:0071039 "nuclear polyadenylation-dependent CUT catabolic
process" evidence=IEA] [GO:0043629 "ncRNA polyadenylation"
evidence=IEA] [GO:0006400 "tRNA modification" evidence=IEA]
[GO:0071036 "nuclear polyadenylation-dependent snoRNA catabolic
process" evidence=IEA] [GO:0071031 "nuclear mRNA surveillance of
mRNA 3'-end processing" evidence=IEA] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IEA] [GO:0030674 "protein
binding, bridging" evidence=IEA] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 CGD:CAL0005378 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 EMBL:AACQ01000001 EMBL:AACQ01000002
eggNOG:COG5082 Gene3D:4.10.60.10 InterPro:IPR016713
PIRSF:PIRSF018162 SUPFAM:SSF57756 KO:K12597 RefSeq:XP_723340.1
RefSeq:XP_723530.1 STRING:Q5APC1 GeneID:3634843 GeneID:3634974
KEGG:cal:CaO19.12307 KEGG:cal:CaO19.4844 Uniprot:Q5APC1
Length = 381
Score = 113 (44.8 bits), Expect = 0.00055, P = 0.00055
Identities = 41/148 (27%), Positives = 59/148 (39%)
Query: 131 QSVIVRKEEQKVETADNGDEGVTTV-EISDNIVLRKLLRGP-RYF---DPPDRGW---QT 182
QS + KE +T ++ + E++D++ LRG RYF DP D Q+
Sbjct: 24 QSFVESKERGSRDTKEHTPTTALSYDEVNDDLDELVALRGEGRYFGVTDPDDESGISRQS 83
Query: 183 ----CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLE-HGVRQCSKAQDCFICKKGGHRAKD 237
C NC + GH C + C CG+++ H QC C C + GH
Sbjct: 84 LGPLCANCYKRGHTRAKCTVVI-----CHKCGAIDDHYESQCPTTIICSRCGEKGHIVSQ 138
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
C KS + Q C C H +C
Sbjct: 139 C----KSKIRKRQYCRTCDSFKHGDENC 162
>UNIPROTKB|P04587 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11682 "Human
immunodeficiency virus type 1 (BH5 ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0005198 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0046718 GO:GO:0020002 GO:GO:0006310
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964 GO:GO:0006278
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0004190
Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630 GO:GO:0004523
GO:GO:0015074 GO:GO:0075713 GO:GO:0042025 GO:GO:0003887
GO:GO:0019028 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0019061 EMBL:K02012 GO:GO:0075732 Gene3D:1.10.10.200
InterPro:IPR017856 SUPFAM:SSF50122 SUPFAM:SSF46919
InterPro:IPR018061 Pfam:PF00077 GO:GO:0004533 GO:GO:0039651
GO:GO:0046797 Gene3D:2.30.30.10 PDB:1BDL PDB:1BDQ PDB:1BDR PDB:1FEJ
PDB:1FF0 PDB:1FFF PDB:1FFI PDB:1FG6 PDB:1FG8 PDB:1FGC PDB:1G2K
PDB:1HPV PDB:1HVJ PDB:1HVS PDB:1K1T PDB:1K1U PDB:1K2B PDB:1K2C
PDB:1ODX PDB:1Q9P PDB:1TCX PDB:1WJE PDB:1WJF PDB:2AOC PDB:2AOD
PDB:2AOE PDB:2AOF PDB:2AOG PDB:2AOH PDB:2AOI PDB:2AOJ PDB:2AVM
PDB:2AVO PDB:2AVQ PDB:2AVS PDB:2AVV PDB:2BPV PDB:2BPW PDB:2BPX
PDB:2BPY PDB:2BPZ PDB:2F80 PDB:2F81 PDB:2F8G PDB:2G3L PDB:2NMY
PDB:2NMZ PDB:2NNK PDB:2NNP PDB:2R38 PDB:2R3T PDB:2R3W PDB:2Z54
PDB:3B7V PDB:3B80 PDB:3BC4 PDB:3BGB PDB:3BGC PDB:3CYW PDB:3CYX
PDB:3D1X PDB:3D1Y PDB:3D1Z PDB:3D20 PDB:3OXC PDBsum:1BDL
PDBsum:1BDQ PDBsum:1BDR PDBsum:1FEJ PDBsum:1FF0 PDBsum:1FFF
PDBsum:1FFI PDBsum:1FG6 PDBsum:1FG8 PDBsum:1FGC PDBsum:1G2K
PDBsum:1HPV PDBsum:1HVJ PDBsum:1HVS PDBsum:1K1T PDBsum:1K1U
PDBsum:1K2B PDBsum:1K2C PDBsum:1ODX PDBsum:1Q9P PDBsum:1TCX
PDBsum:1WJE PDBsum:1WJF PDBsum:2AOC PDBsum:2AOD PDBsum:2AOE
PDBsum:2AOF PDBsum:2AOG PDBsum:2AOH PDBsum:2AOI PDBsum:2AOJ
PDBsum:2AVM PDBsum:2AVO PDBsum:2AVQ PDBsum:2AVS PDBsum:2AVV
PDBsum:2BPV PDBsum:2BPW PDBsum:2BPX PDBsum:2BPY PDBsum:2BPZ
PDBsum:2F80 PDBsum:2F81 PDBsum:2F8G PDBsum:2G3L PDBsum:2NMY
PDBsum:2NMZ PDBsum:2NNK PDBsum:2NNP PDBsum:2R38 PDBsum:2R3T
PDBsum:2R3W PDBsum:2Z54 PDBsum:3B7V PDBsum:3B80 PDBsum:3BC4
PDBsum:3BGB PDBsum:3BGC PDBsum:3CYW PDBsum:3CYX PDBsum:3D1X
PDBsum:3D1Y PDBsum:3D1Z PDBsum:3D20 PDBsum:3OXC
ProteinModelPortal:P04587 SMR:P04587 EvolutionaryTrace:P04587
Uniprot:P04587
Length = 1447
Score = 119 (46.9 bits), Expect = 0.00066, P = 0.00066
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NC++ RKK C+ CG H ++ C++ Q F+
Sbjct: 392 CFNCGKEGHIARNCKAP--RKKGCWKCGKEGHQMKDCTERQANFL 434
>WB|WBGene00043995 [details] [associations]
symbol:F40F12.9 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:Z30215
GeneTree:ENSGT00390000010943 RefSeq:NP_001255048.1
ProteinModelPortal:D5MCP3 SMR:D5MCP3 EnsemblMetazoa:F40F12.9a.1
EnsemblMetazoa:F40F12.9a.2 GeneID:259311 KEGG:cel:CELE_F40F12.9
CTD:259311 WormBase:F40F12.9a Uniprot:D5MCP3
Length = 113
Score = 90 (36.7 bits), Expect = 0.00087, P = 0.00087
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-SKAQDCFI 227
CYNC + GHM+ +C ++ K CF CG H R+C S+ + F+
Sbjct: 29 CYNCHKLGHMSRDCPE--EQPKACFKCGFRGHYYRECPSQIEKKFV 72
>UNIPROTKB|F1PQG8 [details] [associations]
symbol:ZCCHC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00530000063983 EMBL:AAEX03013862 EMBL:AAEX03013863
Ensembl:ENSCAFT00000039080 OMA:ILIRNET Uniprot:F1PQG8
Length = 280
Score = 109 (43.4 bits), Expect = 0.00090, P = 0.00090
Identities = 37/122 (30%), Positives = 49/122 (40%)
Query: 151 GVTTVEISDNIVLRKLLRGPR-----YFDPPDRG--W-----QTCYNCGEEGHMAVNCRS 198
G+ T E I LR+ G R +F +RG W +TC+ CG HM+ +C
Sbjct: 168 GIWTGEYKCEIELRQGEGGVRHLPGAFFLGAERGYSWYKGQPKTCFKCGSRTHMSGSCT- 226
Query: 199 AVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDS 258
+ CF CG H C K C +C K GH CP N+ G +
Sbjct: 227 ----QDRCFRCGEEGHLSPYCRKGIVCNLCGKRGHAFAQCP----KAVHNSVAAQLTGVA 278
Query: 259 GH 260
GH
Sbjct: 279 GH 280
>UNIPROTKB|J9P281 [details] [associations]
symbol:ZCCHC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00530000063983 EMBL:AAEX03013862 EMBL:AAEX03013863
Ensembl:ENSCAFT00000048621 Uniprot:J9P281
Length = 291
Score = 109 (43.4 bits), Expect = 0.00097, P = 0.00097
Identities = 37/122 (30%), Positives = 49/122 (40%)
Query: 151 GVTTVEISDNIVLRKLLRGPR-----YFDPPDRG--W-----QTCYNCGEEGHMAVNCRS 198
G+ T E I LR+ G R +F +RG W +TC+ CG HM+ +C
Sbjct: 179 GIWTGEYKCEIELRQGEGGVRHLPGAFFLGAERGYSWYKGQPKTCFKCGSRTHMSGSCT- 237
Query: 199 AVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDS 258
+ CF CG H C K C +C K GH CP N+ G +
Sbjct: 238 ----QDRCFRCGEEGHLSPYCRKGIVCNLCGKRGHAFAQCP----KAVHNSVAAQLTGVA 289
Query: 259 GH 260
GH
Sbjct: 290 GH 291
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.433 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 317 257 0.00086 114 3 11 22 0.45 33
32 0.48 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 98
No. of states in DFA: 610 (65 KB)
Total size of DFA: 213 KB (2116 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.53u 0.08s 20.61t Elapsed: 00:00:01
Total cpu time: 20.55u 0.08s 20.63t Elapsed: 00:00:01
Start: Sat May 11 02:33:29 2013 End: Sat May 11 02:33:30 2013