BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021122
(317 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359479082|ref|XP_002272646.2| PREDICTED: uncharacterized protein LOC100259916 [Vitis vinifera]
Length = 481
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 179/321 (55%), Positives = 217/321 (67%), Gaps = 21/321 (6%)
Query: 1 MATRQKLKGKLYHEENGEEEEKLKSAAAMSS-DDEEGNEDLSLKIVEKHMLMRAAKLDQD 59
M RQK K K+ H+E+ E +S +SS DDEE NEDLSLKIVEK M RA+K D +
Sbjct: 1 MGRRQKPKAKIDHQEDEEGANSSRSVIYLSSSDDEEANEDLSLKIVEKAM-KRASKTDHN 59
Query: 60 DSDSDVVLNDNTNTNTSDNSNNKNGGVEAVVPGPSGTTDDVIIEDVKSSDKKRIRVRKKK 119
D+ VL + +S ++ V GP+ T DD ++ K +K R K
Sbjct: 60 DA----VLAGRSAVIDLGSSPSEEAEVITDRSGPT-TDDDAEVKSKKKKSRKEKRANKN- 113
Query: 120 KKEADKIEIEDQSVIVRKEEQKVETADNGDEGVTTVEI-----SDNIVLRKLLRGPRYFD 174
IE ++++ + EE+K E+ D E + VE SDNIVLRKLLRGPRYFD
Sbjct: 114 ------IENQEKTDEILMEEKKGES-DKALEILKMVEPYPVEGSDNIVLRKLLRGPRYFD 166
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHR 234
PPD GW CYNCGEEGH AVNC ++VKRKKPCFVCGSLEH +QC K QDCFICKKGGHR
Sbjct: 167 PPDSGWGACYNCGEEGHNAVNC-ASVKRKKPCFVCGSLEHNAKQCMKGQDCFICKKGGHR 225
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNIS 294
AKDCP+KH+SG QN+++CLKCGDS HDMFSCRN YS +DLKE+QCYIC+ FGHLCC+N
Sbjct: 226 AKDCPEKHRSGSQNSKICLKCGDSRHDMFSCRNDYSPEDLKEIQCYICKSFGHLCCINYV 285
Query: 295 DAVPGEVSCFRCGQLGHTGLV 315
D P E SC++CGQLGHTGL
Sbjct: 286 DTGPIEPSCYKCGQLGHTGLA 306
>gi|356547869|ref|XP_003542327.1| PREDICTED: uncharacterized protein LOC100780476 [Glycine max]
Length = 529
Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 166/318 (52%), Positives = 204/318 (64%), Gaps = 27/318 (8%)
Query: 1 MATRQKLKGKLYHEENGEEEEKLKSAAAM--SSDDEEGNEDLSLKIVEKHMLMRAAKLDQ 58
M ++K K EE ++ S + SSDD+E N+DLSLKI++K M MR AK
Sbjct: 1 MGRKEKQNTKAIEEERDQDNFNGASTPPLVFSSDDDEANQDLSLKIIKKAMRMRTAKHAP 60
Query: 59 DDSDSDVVLNDNTNTNTSDNSNNKNGGVEAVVPGPSGTTDDVIIEDVKSSDKKRIRVRKK 118
+D S + D + +GGV GPS D ++E K
Sbjct: 61 NDDVSSPF------SQKPDLALPPSGGVSD---GPSAIADSEVME--------------K 97
Query: 119 KKKEADKIEIEDQSVIVRKEEQKVETADNGDEGVT-TVEISDNIVLRKLLRGPRYFDPPD 177
KK K+E DQSV++ +E++ ET + + V EI DN+VLRKLLRGPRYFDPPD
Sbjct: 98 KKTAKLKVEAGDQSVVIAEEQEMEETINATENHVEGRPEIGDNMVLRKLLRGPRYFDPPD 157
Query: 178 RGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKD 237
W C+NCGEEGH AVNC SAVKRKKPC+VCG L H RQCSK QDCFICKKGGHRAKD
Sbjct: 158 NSWGACFNCGEEGHAAVNC-SAVKRKKPCYVCGCLGHNARQCSKVQDCFICKKGGHRAKD 216
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
CP+KH S ++ +CLKCG+SGHD+FSCRN YS DDLKE+QCY+C+ GHLCCVN DA
Sbjct: 217 CPEKHTSTSKSIAICLKCGNSGHDIFSCRNDYSQDDLKEIQCYVCKRLGHLCCVNTDDAT 276
Query: 298 PGEVSCFRCGQLGHTGLV 315
GE+SC++CGQLGH GL
Sbjct: 277 AGEISCYKCGQLGHMGLA 294
>gi|356574813|ref|XP_003555539.1| PREDICTED: uncharacterized protein LOC100794448 [Glycine max]
Length = 533
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 171/326 (52%), Positives = 204/326 (62%), Gaps = 39/326 (11%)
Query: 1 MATRQKLKGKLYHEE------NGEEEEKLKSAAAMSSDDEEGNEDLSLKIVEKHMLMRAA 54
M ++K K EE NG L SSDD+E N+DLSLKIVEK M MRAA
Sbjct: 1 MGRKEKQNAKAIDEEHDVVNFNGASTPSL----VFSSDDDEANQDLSLKIVEKAMRMRAA 56
Query: 55 KLDQDDSDSDVVLNDNTNTNTSDNSNNKNGGVEAVVPGPSGTTDDVIIEDVKSSDKKRIR 114
K ND+ ++ S S E VP +DV+ D+ S+
Sbjct: 57 KH---------APNDDVSSPFSQKS-------ELAVP-----LNDVV-SDLPSAIADSEV 94
Query: 115 VRKKKKKEADKIEIEDQSVIVRKEEQKVETADNGDEGVTTVE-----ISDNIVLRKLLRG 169
KKK + + DQSV++ EEQ++E N E VE I N+VLRKLLRG
Sbjct: 95 TEKKKTAKLKREAAGDQSVVI-AEEQEMEETSNATENHEFVEGSPVLIGHNMVLRKLLRG 153
Query: 170 PRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
PRYFDPPD W C+NCGE+GH AVNC SA KRKKPC+VCG L H RQC+KAQDCFICK
Sbjct: 154 PRYFDPPDSSWGACFNCGEDGHAAVNC-SAAKRKKPCYVCGGLGHNARQCTKAQDCFICK 212
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC 289
KGGHRAKDC +KH S ++ +CLKCG+SGHDMFSCRN YS DDLKE+QCY+C+ GHLC
Sbjct: 213 KGGHRAKDCLEKHTSRSKSVAICLKCGNSGHDMFSCRNDYSPDDLKEIQCYVCKRVGHLC 272
Query: 290 CVNISDAVPGEVSCFRCGQLGHTGLV 315
CVN DA PGE+SC++CGQLGHTGL
Sbjct: 273 CVNTDDATPGEISCYKCGQLGHTGLA 298
Score = 37.7 bits (86), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 11/77 (14%)
Query: 173 FDPPDRGWQTCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD------- 224
+ P D CY C GH+ VN A + C+ CG L H CS+ +D
Sbjct: 252 YSPDDLKEIQCYVCKRVGHLCCVNTDDATPGEISCYKCGQLGHTGLACSRLRDEITSGAT 311
Query: 225 ---CFICKKGGHRAKDC 238
CF C + GH A++C
Sbjct: 312 PSSCFKCGEEGHFAREC 328
>gi|255573261|ref|XP_002527559.1| cellular nucleic acid binding protein, putative [Ricinus communis]
gi|223533051|gb|EEF34811.1| cellular nucleic acid binding protein, putative [Ricinus communis]
Length = 497
Score = 307 bits (787), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 169/317 (53%), Positives = 218/317 (68%), Gaps = 7/317 (2%)
Query: 1 MATRQKLKGKLYHEENGEEEEKLKSAAAMSSDDEEGNEDLSLKIVEKHMLMRAAKLDQDD 60
MA +K KGK +E EEE+ + ++ DD E NEDLSLKIVEK +LMRAAKL Q+D
Sbjct: 1 MAKEEKRKGKFDDKE--EEEKAVIELSSGDEDDNEANEDLSLKIVEKALLMRAAKLAQND 58
Query: 61 SDSDVVLNDNTNTNTSDNSNNKNGGVEAVVPGPSGTTDDVIIEDVKSSDKKRIRVRKKKK 120
++ VVL+D+ + N + + GV V G V+ E K KK+I+ ++ +
Sbjct: 59 NEI-VVLDDDDDDEDDYNVSKNDSGVVGVSSGRDEAESVVVKEVKKKKKKKKIQKKEIEN 117
Query: 121 KEADKIEIEDQSVIVRKEEQKVETADNG--DEGVTT--VEISDNIVLRKLLRGPRYFDPP 176
+ + + E+ + K + VE + G DE V + VE++ N+VLRKLLRGPRYFD P
Sbjct: 118 QYVETVAKEEDRETIEKIVEVVENGEAGQLDENVDSHAVEVAQNMVLRKLLRGPRYFDSP 177
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAK 236
D GW TC+NCG+EGHMAVNC S K++KPCF+CG L+HGV+QCSK + C ICK GHR
Sbjct: 178 DSGWSTCFNCGKEGHMAVNCPSFEKKRKPCFLCGGLDHGVKQCSKERLCIICKSVGHRPN 237
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDA 296
CP+KHK G Q+++VCLKCGDSGHDMFSCRNSY LDDLKE+QCYIC+ GHLCCVN D
Sbjct: 238 RCPEKHKGGPQSSKVCLKCGDSGHDMFSCRNSYPLDDLKEIQCYICKNGGHLCCVNFVDN 297
Query: 297 VPGEVSCFRCGQLGHTG 313
P EVSC++CG+LGHTG
Sbjct: 298 SPREVSCYKCGELGHTG 314
>gi|224132214|ref|XP_002328213.1| predicted protein [Populus trichocarpa]
gi|222837728|gb|EEE76093.1| predicted protein [Populus trichocarpa]
Length = 683
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 166/333 (49%), Positives = 218/333 (65%), Gaps = 23/333 (6%)
Query: 1 MATRQKLKGKLYHEENGEEEEKLKSAAAMSSDDEEGNEDLSLKIVEKHMLMRAAKLDQDD 60
M T++K K K+ E EE++ K +SSDDEE NEDLSLKIVEK +LM+AAKL +
Sbjct: 1 METKEKQKTKIEVIEEEEEKQSEKFVVEVSSDDEEANEDLSLKIVEKSLLMKAAKLTAN- 59
Query: 61 SDSDVVLNDNTNTNTSDNSNNKNGGVE----------AVVPGPSG-------TTDDVIIE 103
+ +VL+D+ + + S G VE A GPSG + I
Sbjct: 60 GNCLIVLDDDDDDDGSGGDGGDTGVVEVAATSSMEAVAAGVGPSGGKKRKKKVEKRINIS 119
Query: 104 DVKSSDKKRIRVRKKKK--KEADKIEIEDQSVIVRKEEQKVETADNGDEGVTTVEISDNI 161
V + ++ ++ ++ + + ++ IE S V E E ++G G T E S N+
Sbjct: 120 AVNAKEEGKVGTAEEAETVENSETIEKAGTSETVEAVEA-AELVESG--GATADEESVNV 176
Query: 162 VLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK 221
VLRKLLRGPRYFDPPD GW TCYNCGEEGHMAVNC + +K+ KPCFVCGSLEHG +QCSK
Sbjct: 177 VLRKLLRGPRYFDPPDSGWSTCYNCGEEGHMAVNCPTPMKKIKPCFVCGSLEHGAKQCSK 236
Query: 222 AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYI 281
+DCFICKK GHRAK+CPDK+ + Q++++CL CG+SGH+MFSC+ YS +DLKE+QCYI
Sbjct: 237 GRDCFICKKSGHRAKNCPDKYNATPQSSKICLNCGESGHEMFSCKKDYSPNDLKEIQCYI 296
Query: 282 CRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C+ FGHLCCV D +VSC+RCG+LGH+GL
Sbjct: 297 CKSFGHLCCVTSGDDSLRQVSCYRCGELGHSGL 329
>gi|296084007|emb|CBI24395.3| unnamed protein product [Vitis vinifera]
Length = 441
Score = 283 bits (724), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 125/161 (77%), Positives = 139/161 (86%), Gaps = 1/161 (0%)
Query: 155 VEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEH 214
VE SDNIVLRKLLRGPRYFDPPD GW CYNCGEEGH AVNC ++VKRKKPCFVCGSLEH
Sbjct: 98 VEGSDNIVLRKLLRGPRYFDPPDSGWGACYNCGEEGHNAVNC-ASVKRKKPCFVCGSLEH 156
Query: 215 GVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
+QC K QDCFICKKGGHRAKDCP+KH+SG QN+++CLKCGDS HDMFSCRN YS +DL
Sbjct: 157 NAKQCMKGQDCFICKKGGHRAKDCPEKHRSGSQNSKICLKCGDSRHDMFSCRNDYSPEDL 216
Query: 275 KEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGLV 315
KE+QCYIC+ FGHLCC+N D P E SC++CGQLGHTGL
Sbjct: 217 KEIQCYICKSFGHLCCINYVDTGPIEPSCYKCGQLGHTGLA 257
>gi|224102939|ref|XP_002312862.1| predicted protein [Populus trichocarpa]
gi|222849270|gb|EEE86817.1| predicted protein [Populus trichocarpa]
Length = 640
Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 156/316 (49%), Positives = 198/316 (62%), Gaps = 32/316 (10%)
Query: 27 AAMSSDDEEGNEDLSLKIVEKHMLMRAAKLDQDDSDSDVVLNDNTNTNTSDNSNNKNGGV 86
A +SSDDEE NEDLSLKIVEK +LMRAA+L ++ + VVL+D+ V
Sbjct: 26 AEVSSDDEEANEDLSLKIVEKSLLMRAARL-AENGNGFVVLDDDGGGGGGGRDGG---AV 81
Query: 87 EAVVP----------GPSGTTDDVIIEDVKSSDKKRIRVRKKKKKEADKIEIE--DQSVI 134
E +P G G ++ + + + + K++++ E E D + I
Sbjct: 82 EIELPSSMEAESASAGSRGVKKRKKRKNAEKKMEVSVVIAKEEEEVDKIEEAETVDNAEI 141
Query: 135 VRKEE--QKVETADNG----DEGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGE 188
+ K E +KVE + D G VE S NIVLRKLLRGPRYFD D GW CYNCGE
Sbjct: 142 MEKAEKSEKVEVDEAAELVEDGGANAVEDSVNIVLRKLLRGPRYFDTLDSGWSNCYNCGE 201
Query: 189 EGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK----------AQDCFICKKGGHRAKDC 238
EGHMAVNC + K+ KPCFVCGSLEHG +QC+K QDCFICK+ GHRA+DC
Sbjct: 202 EGHMAVNCPTFTKKIKPCFVCGSLEHGAKQCTKVCEDITIQKLGQDCFICKESGHRARDC 261
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVP 298
P+K+K Q++++CLKCG SGH+M SC N YS+DDLKE+QCYIC+ FGHLCC D
Sbjct: 262 PEKYKGTHQSSKICLKCGGSGHEMLSCMNDYSVDDLKEIQCYICKSFGHLCCFTSGDDGS 321
Query: 299 GEVSCFRCGQLGHTGL 314
+VSC+RCG+LGHTGL
Sbjct: 322 RQVSCYRCGELGHTGL 337
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 19/114 (16%)
Query: 170 PRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVK----RKKPCFVCGSLEH---------GV 216
P + + + C CG GH ++C + ++ C++C S H G
Sbjct: 262 PEKYKGTHQSSKICLKCGGSGHEMLSCMNDYSVDDLKEIQCYICKSFGHLCCFTSGDDGS 321
Query: 217 RQCSKAQDCFICKKGGHRAKDCPDKHK--SGFQNAQVCLKCGDSGHDMFSCRNS 268
RQ S C+ C + GH DC H+ S ++ C +CG+ GH C +S
Sbjct: 322 RQVS----CYRCGELGHTGLDCGRLHEEASMIESPSSCYRCGEGGHFARECTSS 371
Score = 37.7 bits (86), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
+CY CGE GH ++C G L C+ C +GGH A++C
Sbjct: 325 SCYRCGELGHTGLDC-------------GRLHEEASMIESPSSCYRCGEGGHFARECTSS 371
Query: 242 HKSGFQNAQV 251
+ G +N ++
Sbjct: 372 ARGGRRNREL 381
>gi|449532848|ref|XP_004173390.1| PREDICTED: DNA-binding protein HEXBP-like, partial [Cucumis
sativus]
Length = 425
Score = 280 bits (717), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 165/326 (50%), Positives = 210/326 (64%), Gaps = 21/326 (6%)
Query: 1 MATRQKLKGKLYHEENGEEEEKLKSAA-----AMSSDDEEGNEDLSLKIVEKHMLMRAAK 55
M R K K K E++ +E + LK+AA + SSDD+E NEDL+LKIVEK M +R+ K
Sbjct: 1 MGRRIKQK-KFKFEDDDDELQVLKTAAPKSTNSPSSDDDEANEDLTLKIVEKAMQLRSGK 59
Query: 56 LDQDDSDSDVVLNDNTNTNTSDNSNNKNGGVEAVVPGPSGTTDDVIIEDVKSSD--KKRI 113
L D V D + ++ G +E V G D + +
Sbjct: 60 LVTDAG----VNKDGKCEQSGNDDVYAVGAIELVSSSLEGAEVDAGTSKASADNIATASK 115
Query: 114 RVRKKKKKEADKIEIEDQSVIVRKEEQKVETADNGDEGVTTVE-----ISDNIVLRKLLR 168
+ KK+KK+ K+ E+++V+V E +K+ET + V VE +DN V RKLLR
Sbjct: 116 KTVKKRKKKVKKLGTEERNVVV-TEGEKIETTTGVIDQVDPVEPNLTGTTDNNVFRKLLR 174
Query: 169 GPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFIC 228
GPRYFDPPD W TCYNCGEEGH AVNC+SA KRK+PCFVCGSLEH + CSKA+DCFIC
Sbjct: 175 GPRYFDPPDS-WGTCYNCGEEGHNAVNCKSA-KRKRPCFVCGSLEHNAKSCSKARDCFIC 232
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
KK GHRA CP+KHK+G + ++CLKCGDSGHDMFSC+N Y+ DDLK++QCYIC+ FGHL
Sbjct: 233 KKSGHRANACPEKHKNGSSSLRICLKCGDSGHDMFSCQNHYADDDLKKIQCYICQKFGHL 292
Query: 289 CCVNISDAVPGEVSCFRCGQLGHTGL 314
CCVN + VSC++CGQ GHTGL
Sbjct: 293 CCVNFTSDTS-VVSCYKCGQTGHTGL 317
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 42/99 (42%), Gaps = 23/99 (23%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKK-------------PCFVCGSLEHGVRQCSKAQDCFICK 229
CY CG+EGH A C SA K K PC+ CG H R+C+ +
Sbjct: 335 CYRCGDEGHFARECTSATKSGKRNREEASGAASPNPCYKCGEEGHFARECTSST------ 388
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
KGG R + SG + C +CG+ GH C S
Sbjct: 389 KGGKRILE----ETSGAASPSSCYRCGEQGHFARECAGS 423
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 55/148 (37%), Gaps = 34/148 (22%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK----------AQDCFICKKGG 232
CY C + GH+ ++ C+ CG H CS+ + C+ C G
Sbjct: 283 CYICQKFGHLCCVNFTSDTSVVSCYKCGQTGHTGLSCSRLRGEASGAVSSSQCYRCGDEG 342
Query: 233 HRAKDCPDKHKSGFQNAQ---------VCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
H A++C KSG +N + C KCG+ GH C +S
Sbjct: 343 HFARECTSATKSGKRNREEASGAASPNPCYKCGEEGHFARECTSSTK------------- 389
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGH 311
G + + SC+RCG+ GH
Sbjct: 390 --GGKRILEETSGAASPSSCYRCGEQGH 415
>gi|449439166|ref|XP_004137358.1| PREDICTED: cold shock domain-containing protein 3-like [Cucumis
sativus]
Length = 406
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 165/326 (50%), Positives = 210/326 (64%), Gaps = 21/326 (6%)
Query: 1 MATRQKLKGKLYHEENGEEEEKLKSAA-----AMSSDDEEGNEDLSLKIVEKHMLMRAAK 55
M R K K K E++ +E + LK+AA + SSDD+E NEDL+LKIVEK M +R+ K
Sbjct: 1 MGRRIKQK-KFKFEDDDDELQVLKTAAPKSTNSPSSDDDEANEDLTLKIVEKAMQLRSGK 59
Query: 56 LDQDDSDSDVVLNDNTNTNTSDNSNNKNGGVEAVVPGPSGTTDDVIIEDVKSSD--KKRI 113
L D V D + ++ G +E V G D + +
Sbjct: 60 LVTDAG----VNKDGKCEQSGNDDVYAVGAIELVSSSLEGAEVDAGTSKASADNIATASK 115
Query: 114 RVRKKKKKEADKIEIEDQSVIVRKEEQKVETADNGDEGVTTVE-----ISDNIVLRKLLR 168
+ KK+KK+ K+ E+++V+V +EE+ T D+ V VE +DN V RKLLR
Sbjct: 116 KTVKKRKKKVKKLGTEERNVVVTEEEKIETTTGVIDQ-VDPVEPNLTGTTDNNVFRKLLR 174
Query: 169 GPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFIC 228
GPRYFDPPD W TCYNCGEEGH AVNC+SA KRK+PCFVCGSLEH + CSKA+DCFIC
Sbjct: 175 GPRYFDPPD-SWGTCYNCGEEGHNAVNCKSA-KRKRPCFVCGSLEHNAKSCSKARDCFIC 232
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
KK GHRA CP+KHK+G + ++CLKCGDSGHDMFSC+N Y+ DDLK++QCYIC+ FGHL
Sbjct: 233 KKSGHRANACPEKHKNGSSSLRICLKCGDSGHDMFSCQNHYADDDLKKIQCYICQKFGHL 292
Query: 289 CCVNISDAVPGEVSCFRCGQLGHTGL 314
CCVN + VSC++CGQ GHTGL
Sbjct: 293 CCVNFTSDT-SVVSCYKCGQTGHTGL 317
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 19/109 (17%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK----------AQDCFICKKGG 232
CY C + GH+ ++ C+ CG H CS+ + C+ C G
Sbjct: 283 CYICQKFGHLCCVNFTSDTSVVSCYKCGQTGHTGLSCSRLRGEASGAVSSSQCYRCGDEG 342
Query: 233 HRAKDCPDKHKSGFQNAQ---------VCLKCGDSGHDMFSCRNSYSLD 272
H A++C KSG +N + C KCG+ GH C +S +D
Sbjct: 343 HFARECTSSTKSGKRNREEASGAASPNPCYKCGEEGHFARECTSSTKVD 391
>gi|255634708|gb|ACU17716.1| unknown [Glycine max]
Length = 389
Score = 256 bits (654), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 113/155 (72%), Positives = 128/155 (82%), Gaps = 1/155 (0%)
Query: 161 IVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS 220
+VLRKLLRGPRYFDPPD W C+NCGEEGH AVNC SAVKRKKPC+VCG L H RQCS
Sbjct: 1 MVLRKLLRGPRYFDPPDNSWGACFNCGEEGHAAVNC-SAVKRKKPCYVCGCLGHNARQCS 59
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCY 280
K QDCFICKK GHRAKDCP+KH S ++ +CLKCG+SGHD+FSCRN YS DDLKE+QCY
Sbjct: 60 KVQDCFICKKDGHRAKDCPEKHTSTSKSIAICLKCGNSGHDIFSCRNDYSQDDLKEIQCY 119
Query: 281 ICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGLV 315
+C+ GHLCCVN DA GE+SC++CGQLGH GL
Sbjct: 120 VCKRLGHLCCVNTDDATAGEISCYKCGQLGHMGLA 154
>gi|297815456|ref|XP_002875611.1| hypothetical protein ARALYDRAFT_323091 [Arabidopsis lyrata subsp.
lyrata]
gi|297321449|gb|EFH51870.1| hypothetical protein ARALYDRAFT_323091 [Arabidopsis lyrata subsp.
lyrata]
Length = 556
Score = 256 bits (654), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 140/286 (48%), Positives = 174/286 (60%), Gaps = 41/286 (14%)
Query: 40 LSLKIVEKHMLMR--AAKLDQDDSDSDVVLNDNTNTNTSDNSNNKNGGVEAVVPGPSGTT 97
LSLKI+EK + R KLD D SDS VV N+ NGG V
Sbjct: 45 LSLKILEKALSRRDVGNKLDSDLSDSGVV-----------NTVMVNGGKSKVK------- 86
Query: 98 DDVIIEDVKSSDKKRIRVRKKKKKEADKIEIEDQ--------SVIVRKEEQKVETADNGD 149
KS K+++ K + I DQ V E+ +VE +D
Sbjct: 87 --------KSESNKKMKRNKLEAAHEFPIVWRDQDEEKVVEEVVKGEGEDNEVERSDE-- 136
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
T E S N+VL+KLLRG RYFDPPD GW +CY+CGE+GH + NC + KR+KPCF+C
Sbjct: 137 --PKTEETSSNLVLKKLLRGARYFDPPDAGWVSCYSCGEQGHTSFNCPTPTKRRKPCFIC 194
Query: 210 GSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY 269
GSLEHG +QCSK DC+ICKKGGHRAKDCPDK+K+G + A VCL+CGD GHDM C+ Y
Sbjct: 195 GSLEHGAKQCSKGHDCYICKKGGHRAKDCPDKYKNGSKGA-VCLRCGDFGHDMILCKYEY 253
Query: 270 SLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGLV 315
S +DLK++QCY+C+ FGHLCCV ++ VSC+RCGQLGHTGL
Sbjct: 254 SQEDLKDIQCYVCKSFGHLCCVEPGNSPSWAVSCYRCGQLGHTGLA 299
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 54/140 (38%), Gaps = 28/140 (20%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKK----PCFVCGSLEH-----GVRQCSKAQDCFICKKGGH 233
C CG+ GH + C+ ++ C+VC S H S A C+ C + GH
Sbjct: 236 CLRCGDFGHDMILCKYEYSQEDLKDIQCYVCKSFGHLCCVEPGNSPSWAVSCYRCGQLGH 295
Query: 234 RAKDCPDKHKSGFQN-------------AQVCLKCGDSGHDMFSCRNSYSLDDL--KEVQ 278
C ++ +N A C +CG+ GH C NS S+ +E Q
Sbjct: 296 TGLACGRHYEERNENDSSSLSFPENNREASECYRCGEEGHFARECPNSSSISTSQGRESQ 355
Query: 279 --CYICRCFGHLC--CVNIS 294
CY C GH C N S
Sbjct: 356 SLCYRCNGAGHFARECPNSS 375
>gi|15229721|ref|NP_189945.1| zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]
gi|9967508|emb|CAC05633.1| putative protein [Arabidopsis thaliana]
gi|20466716|gb|AAM20675.1| putative protein [Arabidopsis thaliana]
gi|25084296|gb|AAN72214.1| putative protein [Arabidopsis thaliana]
gi|332644290|gb|AEE77811.1| zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]
Length = 551
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 111/192 (57%), Positives = 144/192 (75%), Gaps = 5/192 (2%)
Query: 124 DKIEIEDQSVIVRKEEQKVETADNGDEGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTC 183
D+ ++ ++ V E+ +VE +D T E + N+VL+KLLRG RYFDPPD GW +C
Sbjct: 113 DEEKVVEEIVKGEGEDDEVERSDE----PKTEETASNLVLKKLLRGARYFDPPDAGWVSC 168
Query: 184 YNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHK 243
Y+CGE+GH + NC + KR+KPCF+CGSLEHG +QCSK DC+ICKK GHRAKDCPDK+K
Sbjct: 169 YSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKGHDCYICKKTGHRAKDCPDKYK 228
Query: 244 SGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSC 303
+G + A VCL+CGD GHDM C+ YS +DLK+VQCYIC+ FGHLCCV +++ VSC
Sbjct: 229 NGSKGA-VCLRCGDFGHDMILCKYEYSKEDLKDVQCYICKSFGHLCCVEPGNSLSWAVSC 287
Query: 304 FRCGQLGHTGLV 315
+RCGQLGH+GL
Sbjct: 288 YRCGQLGHSGLA 299
Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 54/140 (38%), Gaps = 28/140 (20%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKK----PCFVCGSLEH-----GVRQCSKAQDCFICKKGGH 233
C CG+ GH + C+ ++ C++C S H S A C+ C + GH
Sbjct: 236 CLRCGDFGHDMILCKYEYSKEDLKDVQCYICKSFGHLCCVEPGNSLSWAVSCYRCGQLGH 295
Query: 234 RAKDCPDKHKSGFQN-------------AQVCLKCGDSGHDMFSCRNSYSLDDL--KEVQ 278
C ++ +N A C +CG+ GH C NS S+ +E Q
Sbjct: 296 SGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGHFARECPNSSSISTSHGRESQ 355
Query: 279 --CYICRCFGHLC--CVNIS 294
CY C GH C N S
Sbjct: 356 TLCYRCNGSGHFARECPNSS 375
>gi|222616180|gb|EEE52312.1| hypothetical protein OsJ_34326 [Oryza sativa Japonica Group]
Length = 800
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 106/175 (60%), Positives = 125/175 (71%), Gaps = 6/175 (3%)
Query: 140 QKVETADNGDEGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSA 199
Q V T D D V +SDNIVLRKLLR PRYFDP + +TC+NCGEEGH+AVNC
Sbjct: 182 QSVLTEDGPD-----VPLSDNIVLRKLLRIPRYFDPGETLLETCFNCGEEGHVAVNC-PM 235
Query: 200 VKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
KRK+PCFVCG H +QC++ QDCFICKKGGH AKDCP+KH Q + CL+CG+SG
Sbjct: 236 EKRKRPCFVCGLFGHNSKQCTQGQDCFICKKGGHIAKDCPEKHNRNTQQSTFCLRCGESG 295
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
HDMF C N Y DD+KE++CY+C GHLCC + SD P EVSC+ C Q GHTGL
Sbjct: 296 HDMFGCANDYPRDDVKEIKCYVCNQKGHLCCADFSDICPKEVSCYNCAQPGHTGL 350
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 37/95 (38%), Gaps = 13/95 (13%)
Query: 183 CYNCGEEGHMAVNC-----RSAVKRKKPCFVCGSLEH-----GVRQCSKAQDCFICKKGG 232
C CGE GH C R VK K C+VC H C K C+ C + G
Sbjct: 288 CLRCGESGHDMFGCANDYPRDDVKEIK-CYVCNQKGHLCCADFSDICPKEVSCYNCAQPG 346
Query: 233 HRAKDCPDKHK--SGFQNAQVCLKCGDSGHDMFSC 265
H C + + S +C KCG+ GH C
Sbjct: 347 HTGLGCAKQRREASTAATPTLCYKCGEEGHFARGC 381
>gi|218185703|gb|EEC68130.1| hypothetical protein OsI_36043 [Oryza sativa Indica Group]
Length = 492
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 136/305 (44%), Positives = 179/305 (58%), Gaps = 12/305 (3%)
Query: 14 EENGEEEEKLKSAAAMSSDDEE-GNEDLSLKIVEKHMLMRAAKLDQDDSDSDVVLNDNTN 72
EE G E+ + AA SDDEE GNEDLSL+IV + R + + + +
Sbjct: 17 EEEGSPPERRRRAARSGSDDEEAGNEDLSLEIVARAARRRRRQREASAGFA-------AD 69
Query: 73 TNTSDNSNNKNGGVEAVVPGPSGTTDDVIIEDVKSSDKKRIRVRKKKKKEADKIEIED-- 130
+S + +++ VE PS E K +KR + + + + D
Sbjct: 70 AFSSGDEIDEDAVVELGEADPSSRKRRKEKEKKKRRKEKRKQRKGAPPEGSASTAAADKE 129
Query: 131 QSVIVRKEEQKVETADNG-DEGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEE 189
+S + +E + TA++ E +SDNIVLRKLLR PRYFDP + +TC+NCGEE
Sbjct: 130 ESQVAGTQEAQTGTAESVLTEDGPDAPLSDNIVLRKLLRIPRYFDPGETLLETCFNCGEE 189
Query: 190 GHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNA 249
GH+AVNC KRK+PCFVCG H +QC++ QDCFICKKGGH AKDCP+KH Q +
Sbjct: 190 GHVAVNC-PMEKRKRPCFVCGLFGHNSKQCTQGQDCFICKKGGHIAKDCPEKHNRNTQQS 248
Query: 250 QVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQL 309
CL+CG+SGHDMF C N Y DD+KE++CY+C GHLCC + SD P EVSC+ C Q
Sbjct: 249 TFCLRCGESGHDMFGCANDYPRDDVKEIKCYVCNQKGHLCCADFSDICPKEVSCYNCAQP 308
Query: 310 GHTGL 314
GHTGL
Sbjct: 309 GHTGL 313
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 40/104 (38%), Gaps = 13/104 (12%)
Query: 183 CYNCGEEGHMAVNC-----RSAVKRKKPCFVCGSLEH-----GVRQCSKAQDCFICKKGG 232
C CGE GH C R VK K C+VC H C K C+ C + G
Sbjct: 251 CLRCGESGHDMFGCANDYPRDDVKEIK-CYVCNQKGHLCCADFSDICPKEVSCYNCAQPG 309
Query: 233 HRAKDCPDKHK--SGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
H C + + S +C KCG+ GH C + D +
Sbjct: 310 HTGLGCAKQRREVSTAATPTLCYKCGEEGHFARGCTKNTKSDRM 353
>gi|357493439|ref|XP_003617008.1| Cellular nucleic acid-binding protein [Medicago truncatula]
gi|355518343|gb|AES99966.1| Cellular nucleic acid-binding protein [Medicago truncatula]
Length = 638
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 102/165 (61%), Positives = 123/165 (74%), Gaps = 5/165 (3%)
Query: 155 VEISDNIVLRKLLRGPRYFDPP-DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLE 213
V S+N VLRKLLRGPRYFDPP D W TCYNCGEEGH + NC +A KRKKPCFVCGSL
Sbjct: 254 VNTSNNTVLRKLLRGPRYFDPPSDNVWGTCYNCGEEGHASFNC-TAAKRKKPCFVCGSLS 312
Query: 214 HGV-RQCSKAQDCFICKKGGHRAKDCPDKHKSGF--QNAQVCLKCGDSGHDMFSCRNSYS 270
H ++C + C CK GHR+ DCP KH G ++ VCL+CG+SGHDMF C+N YS
Sbjct: 313 HNNGKKCIMGRYCSTCKLAGHRSSDCPKKHTGGSNSKSLTVCLRCGNSGHDMFLCKNDYS 372
Query: 271 LDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGLV 315
DDLKE+QCY+C+ FGHLCCVN ++A+P E SC++CGQ+GH G
Sbjct: 373 QDDLKEIQCYVCKKFGHLCCVNTTEAIPKEFSCYKCGQMGHIGWA 417
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 93/196 (47%), Gaps = 39/196 (19%)
Query: 1 MATRQKLKGKLYHEENGEEEEKLKSAAAMSSDDEEGNEDLSLKIVEKHMLMRAAKLDQDD 60
M T++K K+ EE+ E S A+S DDEE N+DLSL+I++K +L RA +
Sbjct: 1 MGTKKKSAKKIELEED-ELNASNSSVTAISDDDEEANKDLSLEIIQKALLNRAI-----N 54
Query: 61 SDSDVVLNDNTNTNTSDNSNNKNGGVEAVV------------------------PGPSGT 96
+ VL+ T K V+AV+ G T
Sbjct: 55 PQNGAVLDTQTVKKKRKKKKTKIEVVDAVIVEEKEKEVVETIKAPEKVEHAEVETGMVDT 114
Query: 97 TDDVIIEDVKS-SDKKRIRVRKKKKKEADKIEIEDQSVIVRKEEQK-----VETADNGDE 150
+D+V++ + S S + I+ RKKKKK+ + EI+ + ++ E++K ++ + G+
Sbjct: 115 SDNVVLGNTASESHSEEIKTRKKKKKKKHESEIQTVNAVIVDEKEKEVVKTIKAPEKGEN 174
Query: 151 GVT---TVEISDNIVL 163
V V++SD++VL
Sbjct: 175 AVVETGMVDMSDSVVL 190
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 20/113 (17%)
Query: 183 CYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD----------CFICKKG 231
CY C + GH+ VN A+ ++ C+ CG + H CS+ ++ C+ C +
Sbjct: 381 CYVCKKFGHLCCVNTTEAIPKEFSCYKCGQMGHIGWACSRLKNEATAATTPSSCYKCGEQ 440
Query: 232 GHRAKDCPD--KHKSGFQ-------NAQVCLKCGDSGHDMFSCRNSYSLDDLK 275
GH A++C K S +Q C +CG+ GH C +S + + K
Sbjct: 441 GHFARECSSSVKASSRWQPENTDPATPSSCYRCGEEGHFSRECSSSVKVGNKK 493
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 13/54 (24%)
Query: 182 TCYNCGEEGHMAVNCRSAVK---RKKP----------CFVCGSLEHGVRQCSKA 222
+CY CGE+GH A C S+VK R +P C+ CG H R+CS +
Sbjct: 433 SCYKCGEQGHFARECSSSVKASSRWQPENTDPATPSSCYRCGEEGHFSRECSSS 486
>gi|357156364|ref|XP_003577431.1| PREDICTED: uncharacterized protein LOC100831383 isoform 1
[Brachypodium distachyon]
Length = 476
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 131/287 (45%), Positives = 178/287 (62%), Gaps = 17/287 (5%)
Query: 30 SSDDEEGNEDLSLKIVEKHMLMRAAKLDQDDSDSDVVLNDNTNTNTSDNSNNKNGGVEAV 89
S D++EGNEDLSL+IV + AA +D VVL +SD +++ VE
Sbjct: 29 SDDEDEGNEDLSLEIVARARRREAAGGQPGFADL-VVL-------SSDEEVDEDSVVEL- 79
Query: 90 VPGPSGTTDDVIIEDVKSSDKKRIRVRKKKKKEADKIEIEDQSVIVRKEEQKVETADNG- 148
G D + K K+R + ++K++ A +++ + +E + A+
Sbjct: 80 -----GEADPRRKQKKKKRRKERKKKQRKEEGGAGDSAAKEEPQVAGTQEGQTGIAEVVL 134
Query: 149 DEGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
EG V +SDN VLRKLLR PRYFDP + +TC+NCGEEGH+A NC + KRKKPCF+
Sbjct: 135 TEGGVDVPLSDNTVLRKLLRIPRYFDPGETILETCFNCGEEGHVATNC-TMEKRKKPCFI 193
Query: 209 CGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHK-SGFQNAQVCLKCGDSGHDMFSCRN 267
CG H +QC++ QDCFICKKGGH AKDCPDKH + Q+ +CL+CG+ GHDMF+C N
Sbjct: 194 CGLFGHIAKQCTQGQDCFICKKGGHMAKDCPDKHNINTQQSTTLCLRCGEIGHDMFACTN 253
Query: 268 SYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
Y DD+KE++CY+C+ GHLCC + SD P EV+C+ C Q GHTGL
Sbjct: 254 DYPRDDVKEIKCYVCKQSGHLCCTDFSDNCPKEVTCYNCAQPGHTGL 300
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 79/228 (34%), Gaps = 89/228 (39%)
Query: 137 KEEQKVETADNGDEGVTTV---------EISDNIVLRKLLRGPRYFDPPDRGWQTCYNCG 187
KEE +V G G+ V +SDN VLRKLLR PRYFDP + +TC+NCG
Sbjct: 114 KEEPQVAGTQEGQTGIAEVVLTEGGVDVPLSDNTVLRKLLRIPRYFDPGETILETCFNCG 173
Query: 188 EEG-----------------------------------------HMAVNCR-----SAVK 201
EEG HMA +C + +
Sbjct: 174 EEGHVATNCTMEKRKKPCFICGLFGHIAKQCTQGQDCFICKKGGHMAKDCPDKHNINTQQ 233
Query: 202 RKKPCFVCGSLEHGVRQCS--------KAQDCFICKKGGHR-----AKDCPD-------- 240
C CG + H + C+ K C++CK+ GH + +CP
Sbjct: 234 STTLCLRCGEIGHDMFACTNDYPRDDVKEIKCYVCKQSGHLCCTDFSDNCPKEVTCYNCA 293
Query: 241 -------------KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLK 275
+ S +C KCG GH C N + D K
Sbjct: 294 QPGHTGLGCAKQRRETSVATTPTLCYKCGKEGHFARGCTNIANSDRFK 341
>gi|413925352|gb|AFW65284.1| hypothetical protein ZEAMMB73_494862 [Zea mays]
Length = 515
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/285 (42%), Positives = 167/285 (58%), Gaps = 15/285 (5%)
Query: 32 DDEEGNEDLSLKIVEKHMLMRAAKLDQDDSDSDV-VLNDNTNTNTSDNSNNKNGGVEAVV 90
DDE GNEDLSL+IV RA + + +S V V D + +++D AVV
Sbjct: 35 DDELGNEDLSLEIV-----ARAQRKRRGESAGGVPVFADLLSVSSADEEG-------AVV 82
Query: 91 PGPSGTTDDVIIEDVKSSDKKRIRVRKKKKKEADKIEIEDQSVIVRKEEQKVETADNG-D 149
+ + +++ ++ + A D++ + EE + TA++
Sbjct: 83 ELDEADEPRRKQKKKQRRKQRKKHRKETTEAAAGAAVEVDENAVCSTEEGPIGTAESVLT 142
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E SDN+VLRKLLR PRYFDP + +TC+NC EEGH+A NC KRKKPCFVC
Sbjct: 143 ENGADAPASDNMVLRKLLRIPRYFDPGETLLETCFNCSEEGHVAANC-PLEKRKKPCFVC 201
Query: 210 GSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY 269
G H +QC++ QDCFICKKGGH AKDCPDKH+ + +CLKCG+ GHDMF C N Y
Sbjct: 202 GLFGHNAKQCTQGQDCFICKKGGHMAKDCPDKHRRNDHQSTLCLKCGEIGHDMFGCTNDY 261
Query: 270 SLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
DD+++++CY+C GHLCC + SD P ++SC+ C Q GH+GL
Sbjct: 262 PPDDIEKIRCYVCNQKGHLCCSDFSDDCPKQISCYNCAQSGHSGL 306
>gi|226495087|ref|NP_001142114.1| hypothetical protein [Zea mays]
gi|194707178|gb|ACF87673.1| unknown [Zea mays]
gi|414591597|tpg|DAA42168.1| TPA: hypothetical protein ZEAMMB73_148737 [Zea mays]
Length = 482
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 171/311 (54%), Gaps = 57/311 (18%)
Query: 32 DDEEGNEDLSLKIVEKHMLMRAAKLDQDDSDSDVVLNDNTNTNTSDNSNNKNGGVEAVVP 91
DDE GNEDLSL+I+ RA + + S V G ++
Sbjct: 35 DDEVGNEDLSLEII-----ARAQRKRRWASCGGVT------------------GFANLLS 71
Query: 92 GPSGTTDDVIIEDVKSSDKKR-------IRVRKKKKKEADK-------IEIEDQSVIVRK 137
SG +D ++E ++ + +R + RK+++KEA ++ E++ V +
Sbjct: 72 VSSGDDEDAVVELAEADEPRRKQKKRQHWKQRKRQRKEATAAAAAAAAVDEEEKEVGTTQ 131
Query: 138 EEQKVETADN--GDEGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVN 195
EEQ + TA++ ++GV S ++ LRKLLR PRYFDP + +TC+NC EEGH+A N
Sbjct: 132 EEQ-IGTAESVLTEDGVD-APTSHSMFLRKLLRIPRYFDPGETLLETCFNCSEEGHVAAN 189
Query: 196 CRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKC 255
C KRKKPCFVCG H +QC + QDCFICKKGGH AKDCPDKHK + +C++C
Sbjct: 190 C-PMGKRKKPCFVCGLFGHNAKQCKQGQDCFICKKGGHMAKDCPDKHKRNDHQSTLCIRC 248
Query: 256 GDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISD---------------AVPGE 300
G++GHDMF C N Y DD+++++CY C GHLCC + D AV
Sbjct: 249 GETGHDMFGCANDYPPDDIEQIRCYACNQKGHLCCSDFFDNSLEQGCAKQRREASAVTTP 308
Query: 301 VSCFRCGQLGH 311
CF+CG+ GH
Sbjct: 309 TLCFKCGEEGH 319
>gi|357156367|ref|XP_003577432.1| PREDICTED: uncharacterized protein LOC100831383 isoform 2
[Brachypodium distachyon]
Length = 464
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 164/311 (52%), Gaps = 54/311 (17%)
Query: 30 SSDDEEGNEDLSLKIVEKHM-------------LMRAAKLDQDDSDSDVVLNDNTNTNTS 76
S D++EGNEDLSL+IV + L+ + ++ D DS V L +
Sbjct: 29 SDDEDEGNEDLSLEIVARARRREAAGGQPGFADLVVLSSDEEVDEDSVVELGEADPRRKQ 88
Query: 77 DNSNNKNGGVEAVVPGPSGTTDDVIIEDVKSSDKKRIRVRKKKKKEADKIEIEDQSVIVR 136
+ + G D E+V +V ++ + E+ V+
Sbjct: 89 KKKKRRKERKKKQRKEEGGAGDSAAKEEVYP------QVAGTQEGQTGIAEV----VLT- 137
Query: 137 KEEQKVETADNGDEGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNC 196
EG V +SDN VLRKLLR PRYFDP + +TC+NCGEEGH+A NC
Sbjct: 138 -------------EGGVDVPLSDNTVLRKLLRIPRYFDPGETILETCFNCGEEGHVATNC 184
Query: 197 RSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHK-SGFQNAQVCLKC 255
+ KRKKPCF+CG H +QC++ QDCFICKKGGH AKDCPDKH + Q+ +CL+C
Sbjct: 185 -TMEKRKKPCFICGLFGHIAKQCTQGQDCFICKKGGHMAKDCPDKHNINTQQSTTLCLRC 243
Query: 256 GDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGE--------------- 300
G+ GHDMF+C N Y DD+KE++CY+C+ GHLCC + SD P E
Sbjct: 244 GEIGHDMFACTNDYPRDDVKEIKCYVCKQSGHLCCTDFSDNCPKEGCAKQRRETSVATTP 303
Query: 301 VSCFRCGQLGH 311
C++CG+ GH
Sbjct: 304 TLCYKCGKEGH 314
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 79/193 (40%), Gaps = 68/193 (35%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
EG V +SDN VLRKLLR PRYFDP + +TC+NCGEEGH+A NC + KRKKPCF+C
Sbjct: 138 EGGVDVPLSDNTVLRKLLRIPRYFDPGETILETCFNCGEEGHVATNC-TMEKRKKPCFIC 196
Query: 210 -----------------------------------------------GSLEHGVRQCS-- 220
G + H + C+
Sbjct: 197 GLFGHIAKQCTQGQDCFICKKGGHMAKDCPDKHNINTQQSTTLCLRCGEIGHDMFACTND 256
Query: 221 ------KAQDCFICKKGGHR-----AKDCPD-------KHKSGFQNAQVCLKCGDSGHDM 262
K C++CK+ GH + +CP + S +C KCG GH
Sbjct: 257 YPRDDVKEIKCYVCKQSGHLCCTDFSDNCPKEGCAKQRRETSVATTPTLCYKCGKEGHFA 316
Query: 263 FSCRNSYSLDDLK 275
C N + D K
Sbjct: 317 RGCTNIANSDRFK 329
>gi|296089311|emb|CBI39083.3| unnamed protein product [Vitis vinifera]
Length = 686
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 85/181 (46%), Positives = 126/181 (69%), Gaps = 7/181 (3%)
Query: 137 KEEQKVETADNGDE----GVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHM 192
+E+++V+T + D + +++I DNIVL+KLL+ PR FDPP+ W+ C+N EE
Sbjct: 504 REQKQVDTCKSVDTVKLFQIESIDIKDNIVLQKLLQAPRCFDPPESSWRMCHNSEEEAPT 563
Query: 193 AVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVC 252
AV C SA K+KKPCF+CGS +H C +A++CF+ ++ H + CP+K++ ++ +C
Sbjct: 564 AVAC-SAEKQKKPCFLCGSFKHSGNHCKQARNCFVYERSQH-TRSCPEKNQGNCPSSMIC 621
Query: 253 LKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHT 312
L+CG SGHDM CRN YS DDLKE+QCY+C+ +GHLCCV+ D +P + SC++CG GH
Sbjct: 622 LRCGGSGHDMLFCRNEYSSDDLKEIQCYVCKRYGHLCCVDFPD-IPRQASCYKCGHYGHL 680
Query: 313 G 313
G
Sbjct: 681 G 681
>gi|326505632|dbj|BAJ95487.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 480
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 127/306 (41%), Positives = 180/306 (58%), Gaps = 21/306 (6%)
Query: 14 EENGEEEEKLKSAAAMSSDDEE--GNEDLSLKIVEKHMLMRAAKLDQDDSDSDVVLNDNT 71
++ G + A SDDE+ GNEDL+L+IV + AA ++ VL
Sbjct: 16 DDAGTPSPARRPAPVPVSDDEDEAGNEDLTLEIVARARRREAAGGQPGFAE---VL---- 68
Query: 72 NTNTSDNSNNKNGGVEAVVPGPSGTTDDVIIEDVKSSDKKRIRVRKKKKKEADKIEIEDQ 131
+ +SD +++ VE G D ++ K ++R RKK++KE E++
Sbjct: 69 -SLSSDEEVDEDAVVEL------GEADPSRRKEKKKKKQRRKERRKKQRKEDAAAAPEEE 121
Query: 132 SVIVRKEEQKVETADNG--DEGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEE 189
+ +E + TA++ GV + ++ + L R PRYFDP + +TC+NCGEE
Sbjct: 122 PQVAGAQEGQTGTAESVLIQNGVDVPVSDNTVLRKLL-RIPRYFDPGETILETCFNCGEE 180
Query: 190 GHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH-KSGFQN 248
GH+AVNC KRKKPCFVCG H +QC++ Q+CFICKKGGH AKDCPDKH K Q
Sbjct: 181 GHVAVNC-PMEKRKKPCFVCGLFGHNAKQCTQGQECFICKKGGHMAKDCPDKHTKITQQC 239
Query: 249 AQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQ 308
+CL+CG++GHDMF C N Y LDD+KE++CY+C+ GHLCC + +D+ EV+C+ C Q
Sbjct: 240 TALCLRCGETGHDMFGCSNDYPLDDVKEIKCYVCKQNGHLCCTDFADSCSKEVTCYNCAQ 299
Query: 309 LGHTGL 314
GHTGL
Sbjct: 300 SGHTGL 305
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 11/97 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVK----RKKPCFVCGSLEH-----GVRQCSKAQDCFICKKGGH 233
C CGE GH C + ++ C+VC H CSK C+ C + GH
Sbjct: 243 CLRCGETGHDMFGCSNDYPLDDVKEIKCYVCKQNGHLCCTDFADSCSKEVTCYNCAQSGH 302
Query: 234 RAKDCPDKHK--SGFQNAQVCLKCGDSGHDMFSCRNS 268
C + + S +C KCG+ GH C NS
Sbjct: 303 TGLGCAKQRRETSVATTPTLCYKCGEDGHFARGCTNS 339
>gi|326516278|dbj|BAJ92294.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 480
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 126/306 (41%), Positives = 179/306 (58%), Gaps = 21/306 (6%)
Query: 14 EENGEEEEKLKSAAAMSSDDEE--GNEDLSLKIVEKHMLMRAAKLDQDDSDSDVVLNDNT 71
++ G + A SDDE+ GNEDL+L+IV + AA ++ VL
Sbjct: 16 DDAGTPSPARRPAPVPVSDDEDEAGNEDLTLEIVARARRREAAGGQPGFAE---VL---- 68
Query: 72 NTNTSDNSNNKNGGVEAVVPGPSGTTDDVIIEDVKSSDKKRIRVRKKKKKEADKIEIEDQ 131
+ +SD +++ VE G D ++ K ++R RKK++KE E++
Sbjct: 69 -SLSSDEEVDEDAVVEL------GEADPSRRKEKKKKKQRRKERRKKQRKEDAAAAPEEE 121
Query: 132 SVIVRKEEQKVETADNG--DEGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEE 189
+ +E + TA++ GV + ++ + L R P YFDP + +TC+NCGEE
Sbjct: 122 PQVAGAQEGQTGTAESVLIQNGVDVPVSDNTVLRKLL-RIPGYFDPGETILETCFNCGEE 180
Query: 190 GHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH-KSGFQN 248
GH+AVNC KRKKPCFVCG H +QC++ Q+CFICKKGGH AKDCPDKH K Q
Sbjct: 181 GHVAVNC-PMEKRKKPCFVCGLFGHNAKQCTQGQECFICKKGGHMAKDCPDKHTKITRQC 239
Query: 249 AQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQ 308
+CL+CG++GHDMF C N Y LDD+KE++CY+C+ GHLCC + +D+ EV+C+ C Q
Sbjct: 240 TALCLRCGETGHDMFGCSNDYPLDDVKEIKCYVCKQNGHLCCTDFADSCSKEVTCYNCAQ 299
Query: 309 LGHTGL 314
GHTGL
Sbjct: 300 SGHTGL 305
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 70/194 (36%), Gaps = 80/194 (41%)
Query: 155 VEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEE------------------------- 189
V +SDN VLRKLLR P YFDP + +TC+NCGEE
Sbjct: 146 VPVSDNTVLRKLLRIPGYFDPGETILETCFNCGEEGHVAVNCPMEKRKKPCFVCGLFGHN 205
Query: 190 ----------------GHMAVNC---RSAVKRK--KPCFVCGSLEHGVRQCS-------- 220
GHMA +C + + R+ C CG H + CS
Sbjct: 206 AKQCTQGQECFICKKGGHMAKDCPDKHTKITRQCTALCLRCGETGHDMFGCSNDYPLDDV 265
Query: 221 KAQDCFICKKGGH--------------RAKDCPDKHKSGFQNAQ------------VCLK 254
K C++CK+ GH +C +G A+ +C K
Sbjct: 266 KEIKCYVCKQNGHLCCTDFADSCSKEVTCYNCAQSGHTGLGCAKQRRETSVATTPTLCYK 325
Query: 255 CGDSGHDMFSCRNS 268
CG+ GH C NS
Sbjct: 326 CGEDGHFARGCTNS 339
>gi|147828626|emb|CAN73043.1| hypothetical protein VITISV_005152 [Vitis vinifera]
Length = 513
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 129/321 (40%), Positives = 162/321 (50%), Gaps = 75/321 (23%)
Query: 1 MATRQKLKGKLYHEENGEEEEKLKSAAAMSS-DDEEGNEDLSLKIVEKHMLMRAAKLDQD 59
M RQK K K+ H+E+ E +S +SS DB NEBLSLKIVEK M RA+K D +
Sbjct: 78 MGRRQKPKAKIDHQEDEEGANSSRSVIYLSSSDBXXANEBLSLKIVEKAM-KRASKTDHN 136
Query: 60 DSDSDVVLNDNTNTNTSDNSNNKNGGVEAVVPGPSGTTDDVIIEDVKSSDKKRIRVRKKK 119
D+ VL + +S ++ V GP+ T DD ++ K +K R K
Sbjct: 137 DA----VLAGRSAVIDLGSSPSEEAEVITDRSGPT-TDDDAEVKSKKKKSRKEKRANKN- 190
Query: 120 KKEADKIEIEDQSVIVRKEEQKVETADNGDEGVTTVEI-----SDNIVLRKLLRGPRYFD 174
IE ++++ + EE+K E+ D E + VE SDNIVLRKLLRGPRYFD
Sbjct: 191 ------IENQEKTDEILMEEKKGES-DKALEILKMVEPXPVEGSDNIVLRKLLRGPRYFD 243
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHR 234
PPD GW CYNCGEEGH AVNC S VKRKKP CF+C H
Sbjct: 244 PPDSGWGACYNCGEEGHNAVNCAS-VKRKKP-------------------CFVCGSLEHN 283
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNIS 294
AK C +KE+QCYIC+ FGHLCC+N
Sbjct: 284 AKQC-----------------------------------MKEIQCYICKSFGHLCCINYV 308
Query: 295 DAVPGEVSCFRCGQLGHTGLV 315
D P E SC++CGQLGHTGL
Sbjct: 309 DTGPIEPSCYKCGQLGHTGLA 329
>gi|224138186|ref|XP_002322751.1| predicted protein [Populus trichocarpa]
gi|222867381|gb|EEF04512.1| predicted protein [Populus trichocarpa]
Length = 265
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 88/209 (42%), Positives = 123/209 (58%), Gaps = 21/209 (10%)
Query: 123 ADKIEIEDQSVIVRKEEQKVETADNGDEGVTT-------VEISDNIVLRKLLRGPRYFDP 175
A+ + E V K+++KV+ A + T VE +DNIVLR+LLR RYFD
Sbjct: 38 AETVPAETFIVNAMKQKRKVDRASKEMQEDTAKGMEREQVEFTDNIVLRQLLRRTRYFDG 97
Query: 176 PD-RGWQTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCSKAQDCFICKKGGH 233
P W+ C NCG+EGHM C+ ++KK CF+C SL+H R+C K + C +CK GH
Sbjct: 98 PSYNSWEMCSNCGQEGHMVCQCKMRKRKKKKLCFLCESLDHIGRRCRKNRYCSVCKGRGH 157
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNI 293
+A+ CP++ + + +CL+CG+SGHDMFSC Y DLKE+QCY+CR FGHLCC +
Sbjct: 158 KARYCPERDQERSSHG-ICLQCGNSGHDMFSCTADYLPSDLKEIQCYVCRSFGHLCCADF 216
Query: 294 SDAVPGE-----------VSCFRCGQLGH 311
D P E +C++CG+ H
Sbjct: 217 PDTDPRESCGATGSTKAYTTCYKCGEEDH 245
>gi|164605537|dbj|BAF98603.1| CM0545.270.nc [Lotus japonicus]
Length = 259
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 101/191 (52%), Gaps = 60/191 (31%)
Query: 126 IEIEDQSVIVRKEEQKVETADNGDEGVTTVEISDNIVLRKLLRGPRYFDPP-DRGWQTCY 184
+ ++++V K QK+E ++ G TV++SDN+VLRKLLRGPRY+DPP D GW+TCY
Sbjct: 12 VLFQEEAVETIKGTQKMEPSEAG-----TVQMSDNVVLRKLLRGPRYYDPPADCGWETCY 66
Query: 185 NCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKS 244
NCGEEGH V C +A + KKPC ++C H+AK C
Sbjct: 67 NCGEEGHATVKCAAAKELKKPC-------------------YLCGSLMHQAKRCK----- 102
Query: 245 GFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCF 304
KE+QCY+C+ FGHLCC N + + P E+SC+
Sbjct: 103 ------------------------------KEIQCYVCKSFGHLCCANTTGSTPIEISCY 132
Query: 305 RCGQLGHTGLV 315
+CGQ GHTGL
Sbjct: 133 KCGQTGHTGLA 143
>gi|412994131|emb|CCO14642.1| predicted protein [Bathycoccus prasinos]
Length = 421
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 159 DNIVLRKLLRGPRYFDPP-DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVR 217
+N +R++LR PRYFD + C+ CG+ GH C K +KPC +CG +H R
Sbjct: 135 ENTTVREILRLPRYFDDDFEAAAMRCFRCGKGGHREFECTLPAK-QKPCHLCGDFDHQAR 193
Query: 218 QCSKAQDCFICKKGGHRAKDCPDKHKSGF-QNAQVCLKCGDSGHDMFSCRNSYSLDDLKE 276
C K CF C GHR++DC ++ G Q + CL+CG SGH + C ++S DLK
Sbjct: 194 DCPKGL-CFNCLTPGHRSRDCEERRGIGRDQQSLCCLRCGRSGHVVEKCMFTFSEADLKR 252
Query: 277 VQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHT 312
+ CY+C FGHLCC PG++SC +CG GH
Sbjct: 253 MPCYVCGEFGHLCCAPQDSQPPGKLSCVKCGGEGHV 288
>gi|308807348|ref|XP_003080985.1| E3 ubiquitin ligase interacting with arginine methyltransferase
(ISS) [Ostreococcus tauri]
gi|116059446|emb|CAL55153.1| E3 ubiquitin ligase interacting with arginine methyltransferase
(ISS) [Ostreococcus tauri]
Length = 276
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 83/165 (50%), Gaps = 4/165 (2%)
Query: 153 TTVEISDNIVLRKLLRGPRYFDPP-DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGS 211
T + +N +R +LR PRYFD + C+ CG+ GH C K KKPC +CG
Sbjct: 27 TPRDDQENEEVRNILRQPRYFDDDYEAAALRCFRCGQGGHREAECELPAK-KKPCHLCGY 85
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGF-QNAQVCLKCGDSGHDMFSCRNSYS 270
H R C C+ C GH+++DCP SG A CL+CG SGH + C +
Sbjct: 86 KSHVARDCPHGL-CYNCLTPGHQSRDCPYVRGSGRDAQALCCLRCGKSGHVVADCVYRFD 144
Query: 271 LDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGLV 315
+DL ++ CY+C GHLCC PG +C RCG GH L
Sbjct: 145 ANDLAQIHCYVCGSIGHLCCAPQDALPPGVPTCCRCGGNGHLDLA 189
>gi|242068929|ref|XP_002449741.1| hypothetical protein SORBIDRAFT_05g022420 [Sorghum bicolor]
gi|241935584|gb|EES08729.1| hypothetical protein SORBIDRAFT_05g022420 [Sorghum bicolor]
Length = 261
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 58/80 (72%)
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNIS 294
AKDCPDKHK + +CL+CG++GHDMF C N Y DD+++++CY+C GHLCC + S
Sbjct: 2 AKDCPDKHKRNDHQSTLCLRCGETGHDMFGCTNDYPQDDIEQIRCYVCNQKGHLCCSDFS 61
Query: 295 DAVPGEVSCFRCGQLGHTGL 314
D P ++SC+ C Q GH+GL
Sbjct: 62 DNCPKQISCYNCAQSGHSGL 81
>gi|15229296|ref|NP_189935.1| Zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]
gi|7288027|emb|CAB81789.1| hypothetical protein [Arabidopsis thaliana]
gi|332644278|gb|AEE77799.1| Zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]
Length = 260
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 94/194 (48%), Gaps = 32/194 (16%)
Query: 33 DEEGNEDLSLKIVEKHMLMRAA--KLDQDDSDSDVVLNDNTNTNTSDNSNNKNGGVEAVV 90
D+E NEDL LKI+EK R KLD D S + GV + V
Sbjct: 23 DDEANEDLRLKILEKAFSRRNVDNKLDSDLS--------------------FDPGVVSTV 62
Query: 91 PGPSGTTDDVIIEDVKSSDKKRIRVRKKKKKEADKIEIEDQSVIVRKEEQKVETADNGDE 150
G +++V K+ K EA EI V + E+ VE G+E
Sbjct: 63 MVNGGKSEEVKNSKSNKK-------MKRNKLEAAN-EIVTHCVERQDEDNMVEDVVRGEE 114
Query: 151 GVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCG 210
E + N V+ KLLRG RYFDP D GW TCY+CGE+ H+ V+C + +K CF+C
Sbjct: 115 --EDGETTSNSVMTKLLRGARYFDPLDAGWVTCYSCGEKDHITVSCPTLTNCRKSCFICA 172
Query: 211 SLEHGVRQCSKAQD 224
SLEHG RQC+K D
Sbjct: 173 SLEHGARQCTKVWD 186
>gi|115485975|ref|NP_001068131.1| Os11g0573200 [Oryza sativa Japonica Group]
gi|113645353|dbj|BAF28494.1| Os11g0573200, partial [Oryza sativa Japonica Group]
Length = 129
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 57/83 (68%), Gaps = 6/83 (7%)
Query: 140 QKVETADNGDEGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSA 199
Q V T D D V +SDNIVLRKLLR PRYFDP + +TC+NCGEEGH+AVNC
Sbjct: 22 QSVLTEDGPD-----VPLSDNIVLRKLLRIPRYFDPGETLLETCFNCGEEGHVAVNC-PM 75
Query: 200 VKRKKPCFVCGSLEHGVRQCSKA 222
KRK+PCFVCG H +QC++
Sbjct: 76 EKRKRPCFVCGLFGHNSKQCTQV 98
>gi|255581588|ref|XP_002531599.1| cellular nucleic acid binding protein, putative [Ricinus communis]
gi|223528795|gb|EEF30802.1| cellular nucleic acid binding protein, putative [Ricinus communis]
Length = 167
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 50/73 (68%)
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGE 300
KH+ + CL+CG GH+MFSCR Y DDLKE+QCY+C+ FGHLCC + D P E
Sbjct: 14 KHQENKSHPDACLRCGGPGHEMFSCRTDYLPDDLKEIQCYVCKKFGHLCCHDFPDLYPTE 73
Query: 301 VSCFRCGQLGHTG 313
+SC+ CGQ GH G
Sbjct: 74 LSCYNCGQSGHLG 86
>gi|414591598|tpg|DAA42169.1| TPA: hypothetical protein ZEAMMB73_148737 [Zea mays]
Length = 226
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 109/212 (51%), Gaps = 42/212 (19%)
Query: 32 DDEEGNEDLSLKIVEKHMLMRAAKLDQDDSDSDVVLNDNTNTNTSDNSNNKNGGVEAVVP 91
DDE GNEDLSL+I+ RA + + S V G ++
Sbjct: 35 DDEVGNEDLSLEII-----ARAQRKRRWASCGGVT------------------GFANLLS 71
Query: 92 GPSGTTDDVIIEDVKSSDKKR-------IRVRKKKKKEADK-------IEIEDQSVIVRK 137
SG +D ++E ++ + +R + RK+++KEA ++ E++ V +
Sbjct: 72 VSSGDDEDAVVELAEADEPRRKQKKRQHWKQRKRQRKEATAAAAAAAAVDEEEKEVGTTQ 131
Query: 138 EEQKVETADN--GDEGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVN 195
EEQ + TA++ ++GV S ++ LRKLLR PRYFDP + +TC+NC EEGH+A N
Sbjct: 132 EEQ-IGTAESVLTEDGVD-APTSHSMFLRKLLRIPRYFDPGETLLETCFNCSEEGHVAAN 189
Query: 196 CRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C KRKKPCFVCG H +QC + ++
Sbjct: 190 CPMG-KRKKPCFVCGLFGHNAKQCKQVGPPYL 220
>gi|297805180|ref|XP_002870474.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297316310|gb|EFH46733.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 176
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 53/70 (75%)
Query: 247 QNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRC 306
+ A+VCL+CG+ GHDM C+ YS +DLK+++CY+C+ GHLCC+ S + VSC+RC
Sbjct: 7 EAAEVCLRCGEFGHDMTLCKYEYSQEDLKDIKCYVCKSLGHLCCIEPSHSPSWTVSCYRC 66
Query: 307 GQLGHTGLVS 316
GQLGHTGL S
Sbjct: 67 GQLGHTGLAS 76
>gi|413925351|gb|AFW65283.1| hypothetical protein ZEAMMB73_494862 [Zea mays]
Length = 270
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 51/80 (63%), Gaps = 9/80 (11%)
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNIS 294
AKDCPDKH+ + +CLKCG+ GHDMF C N Y DD+++ GHLCC + S
Sbjct: 2 AKDCPDKHRRNDHQSTLCLKCGEIGHDMFGCTNDYPPDDIEK---------GHLCCSDFS 52
Query: 295 DAVPGEVSCFRCGQLGHTGL 314
D P ++SC+ C Q GH+GL
Sbjct: 53 DDCPKQISCYNCAQSGHSGL 72
>gi|414591599|tpg|DAA42170.1| TPA: hypothetical protein ZEAMMB73_148737 [Zea mays]
Length = 256
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 53/92 (57%), Gaps = 15/92 (16%)
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNIS 294
AKDCPDKHK + +C++CG++GHDMF C N Y DD+++++CY C GHLCC +
Sbjct: 2 AKDCPDKHKRNDHQSTLCIRCGETGHDMFGCANDYPPDDIEQIRCYACNQKGHLCCSDFF 61
Query: 295 D---------------AVPGEVSCFRCGQLGH 311
D AV CF+CG+ GH
Sbjct: 62 DNSLEQGCAKQRREASAVTTPTLCFKCGEEGH 93
>gi|145350100|ref|XP_001419461.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579692|gb|ABO97754.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 170
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 68/131 (51%), Gaps = 5/131 (3%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C+ CG+ GH C K KK C +CG H R C CF C GH+++DCP
Sbjct: 6 CFRCGQGGHREAECELPAK-KKACHLCGYKSHIARDCPHGL-CFNCLTPGHQSRDCPYAR 63
Query: 243 KSGFQNAQ--VCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGE 300
SG ++AQ CL+CG SGH + C + DL ++ CY+C GHLCC PG
Sbjct: 64 GSG-RDAQERCCLRCGKSGHVVADCVYRFDASDLAQIHCYVCGSKGHLCCAPQDSLPPGL 122
Query: 301 VSCFRCGQLGH 311
SC RCG GH
Sbjct: 123 PSCCRCGGDGH 133
>gi|359481085|ref|XP_002266540.2| PREDICTED: uncharacterized protein LOC100252970 [Vitis vinifera]
Length = 248
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 58/87 (66%), Gaps = 5/87 (5%)
Query: 137 KEEQKVETADNGDE----GVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHM 192
+E+++V+T + D + +++I DNIVL+KLL+ PR FDPP+ W+ C+N EE
Sbjct: 105 REQKQVDTCKSVDTVKLFQIESIDIKDNIVLQKLLQAPRCFDPPESSWRMCHNSEEEAPT 164
Query: 193 AVNCRSAVKRKKPCFVCGSLEHGVRQC 219
AV C SA K+KKPCF+CGS +H C
Sbjct: 165 AVAC-SAEKQKKPCFLCGSFKHSGNHC 190
>gi|15239349|ref|NP_198473.1| zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]
gi|9759037|dbj|BAB09364.1| unnamed protein product [Arabidopsis thaliana]
gi|332006678|gb|AED94061.1| zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]
Length = 254
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 46/67 (68%)
Query: 249 AQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQ 308
A+VCL+CG GHDM C+ YS +DLK ++CY+C GHLCC+ VSC+RCGQ
Sbjct: 25 AEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLCCIEPGHTQSWTVSCYRCGQ 84
Query: 309 LGHTGLV 315
LGHTGL
Sbjct: 85 LGHTGLA 91
>gi|303278606|ref|XP_003058596.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459756|gb|EEH57051.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 291
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 61/118 (51%), Gaps = 12/118 (10%)
Query: 206 CFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQN-AQVCLKCGDSGHDMFS 264
C +CG L+H R C + CF C K GH+++DCP+ G + A CL+CG GH
Sbjct: 1 CHLCGYLDHLARDCRRGL-CFNCLKSGHQSRDCPEPRGVGRETQALCCLRCGGRGHAATD 59
Query: 265 CRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEV----------SCFRCGQLGHT 312
C S++ D+ V CY+C FGHLCC + +A SC RCG +GH
Sbjct: 60 CARSFAASDVARVACYVCGEFGHLCCASQDEAAGALASAGGGGGKRKSCCRCGGMGHV 117
>gi|108864537|gb|ABA94400.2| Zinc knuckle family protein, expressed [Oryza sativa Japonica
Group]
Length = 232
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 37/53 (69%)
Query: 262 MFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
MF C N Y DD+KE++CY+C GHLCC + SD P EVSC+ C Q GHTGL
Sbjct: 1 MFGCANDYPRDDVKEIKCYVCNQKGHLCCADFSDICPKEVSCYNCAQPGHTGL 53
>gi|299752665|ref|XP_001841159.2| DNA-binding protein hexbp [Coprinopsis cinerea okayama7#130]
gi|298409943|gb|EAU80696.2| DNA-binding protein hexbp [Coprinopsis cinerea okayama7#130]
Length = 173
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 70/147 (47%), Gaps = 23/147 (15%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC----------SKAQDC 225
P G TCYNCG EGH++ +C A K K C+ CG H R C S+ +C
Sbjct: 21 PKAGTPTCYNCGGEGHVSRDCTQAAK-PKSCYRCGEEGHLSRDCTSDNAAAGGVSRGGEC 79
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQ-VCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRC 284
+ C K GH A+ CPD F +Q C CG GH S D ++ +CY C
Sbjct: 80 YRCGKTGHLARSCPDSGYGSFGGSQKTCYTCGGVGH--------LSRDCVQGSKCYNCSS 131
Query: 285 FGHLCCVNISDAVPGEVSCFRCGQLGH 311
GH ++ P + +C++CGQ GH
Sbjct: 132 IGH---ISRDCPQPQKRACYQCGQEGH 155
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 148 GDEGVTTVE-ISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCR-----SAVK 201
G+EG + + SDN + RG CY CG+ GH+A +C S
Sbjct: 54 GEEGHLSRDCTSDNAAAGGVSRG-----------GECYRCGKTGHLARSCPDSGYGSFGG 102
Query: 202 RKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
+K C+ CG + H R C + C+ C GH ++DCP K + C +CG GH
Sbjct: 103 SQKTCYTCGGVGHLSRDCVQGSKCYNCSSIGHISRDCPQPQK------RACYQCGQEGH 155
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 220 SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQC 279
S A+ CF C GH+A +CP K+G C CG GH C + K C
Sbjct: 2 SGARGCFNCGGFGHQAANCP---KAG---TPTCYNCGGEGHVSRDCTQA-----AKPKSC 50
Query: 280 YICRCFGHLCCVNISD-AVPGEVS----CFRCGQLGH 311
Y C GHL SD A G VS C+RCG+ GH
Sbjct: 51 YRCGEEGHLSRDCTSDNAAAGGVSRGGECYRCGKTGH 87
>gi|221114884|ref|XP_002154581.1| PREDICTED: DNA-binding protein HEXBP-like isoform 1 [Hydra
magnipapillata]
gi|449665534|ref|XP_004206169.1| PREDICTED: DNA-binding protein HEXBP-like isoform 2 [Hydra
magnipapillata]
Length = 209
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 181 QTCYNCGEEGHMAVNC--RSAVKRKKPCFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKD 237
+TCY+CG GH++ +C R K K+ C+ CG H R C ++ C+ C K GH KD
Sbjct: 61 RTCYSCGRSGHISRDCTQRGGRKGKQRCYRCGKDGHFARDCEGEEEMCYTCGKAGHIKKD 120
Query: 238 CPDKHK-SGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNIS 294
CP+ + N QVC C GH C ++V CY C GH C N S
Sbjct: 121 CPESESFTSSTNEQVCYHCNKPGHFARECAEKDDSSRERDVTCYKCNEKGHFARDCHNKS 180
Query: 295 DAVPGEVSCFRCGQLGH 311
+ +CF+C Q+GH
Sbjct: 181 NDKKNGNTCFKCHQVGH 197
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 68/151 (45%), Gaps = 30/151 (19%)
Query: 182 TCYNCGEEGHMAVNC------RSAVKRKKPCFVCGSLEHGVRQCSK-----------AQD 224
TCY CG EGH A NC ++ K K C+ CG + H R CSK ++
Sbjct: 3 TCYKCGNEGHYARNCTEPSSTETSQKSDKECYRCGEVGHLSRDCSKSSSGGGSGNFDSRT 62
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRC 284
C+ C + GH ++DC + G + Q C +CG GH C + +E CY C
Sbjct: 63 CYSCGRSGHISRDCT--QRGGRKGKQRCYRCGKDGHFARDC-------EGEEEMCYTCGK 113
Query: 285 FGHL---CCVNIS-DAVPGEVSCFRCGQLGH 311
GH+ C + S + E C+ C + GH
Sbjct: 114 AGHIKKDCPESESFTSSTNEQVCYHCNKPGH 144
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Query: 178 RGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA---------QDCFIC 228
+G Q CY CG++GH A +C ++ C+ CG H + C ++ Q C+ C
Sbjct: 83 KGKQRCYRCGKDGHFARDCEG---EEEMCYTCGKAGHIKKDCPESESFTSSTNEQVCYHC 139
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
K GH A++C +K S + C KC + GH C N S D C+ C GH
Sbjct: 140 NKPGHFARECAEKDDSSRERDVTCYKCNEKGHFARDCHNK-SNDKKNGNTCFKCHQVGHF 198
>gi|168009954|ref|XP_001757670.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691364|gb|EDQ77727.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 106
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 63/136 (46%), Gaps = 55/136 (40%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
+TCYNCG++GH A C + R+KP C++C GH + DCP
Sbjct: 1 ETCYNCGQQGHWAAEC-TKQAREKP-------------------CYVCGNFGHFSYDCP- 39
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGE 300
+ ++CYIC+ GH+CC+++SDA P
Sbjct: 40 ----------------------------------EALRCYICKRTGHMCCIDVSDASPTP 65
Query: 301 VSCFRCGQLGHTGLVS 316
VSC+RCG LGH+G+VS
Sbjct: 66 VSCYRCGDLGHSGVVS 81
>gi|161752|gb|AAC37171.1| cnjB [Tetrahymena thermophila]
gi|737494|prf||1922371A cnjB gene
Length = 1748
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 64/142 (45%), Gaps = 20/142 (14%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD----------CFICKKG 231
C+ C +EGHM+ +C + ++K CF CG H + C Q CF C +
Sbjct: 1477 ACFKCNQEGHMSKDCPNQQQKKSGCFKCGEEGHFSKDCPNPQKQQQQKPRGGACFKCGEE 1536
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC-- 289
GH +KDCP+ K Q C KC GH C NS + K C+ C GH+
Sbjct: 1537 GHISKDCPNPQKQ--QQKNTCFKCKQEGHISKDCPNSQNSGGNK---CFNCNQEGHMSKD 1591
Query: 290 CVNISDAVPGEVSCFRCGQLGH 311
C N S G CF CG+ GH
Sbjct: 1592 CPNPSQKKKG---CFNCGEEGH 1610
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 65/141 (46%), Gaps = 16/141 (11%)
Query: 183 CYNCGEEGHMAVNC----RSAVKRKKPCFVCGSLEHGVRQCSKAQD----CFICKKGGHR 234
C+ CG+ GHMA +C + K+ CF C H + C Q CF C + GH
Sbjct: 1451 CFKCGKVGHMAKDCTEPQQQGRKQSGACFKCNQEGHMSKDCPNQQQKKSGCFKCGEEGHF 1510
Query: 235 AKDCPDKHKSGFQNAQ--VCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--C 290
+KDCP+ K Q + C KCG+ GH C N ++ C+ C+ GH+ C
Sbjct: 1511 SKDCPNPQKQQQQKPRGGACFKCGEEGHISKDCPNPQK--QQQKNTCFKCKQEGHISKDC 1568
Query: 291 VNISDAVPGEVSCFRCGQLGH 311
N ++ G CF C Q GH
Sbjct: 1569 PNSQNS--GGNKCFNCNQEGH 1587
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKR--KKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGHR 234
C+ CGEEGH++ +C + K+ K CF C H + C +Q+ CF C + GH
Sbjct: 1529 ACFKCGEEGHISKDCPNPQKQQQKNTCFKCKQEGHISKDCPNSQNSGGNKCFNCNQEGHM 1588
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+KDCP+ Q + C CG+ GH C
Sbjct: 1589 SKDCPNPS----QKKKGCFNCGEEGHQSREC 1615
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 55/122 (45%), Gaps = 21/122 (17%)
Query: 204 KPCFVCGSLEHGVRQCSKAQD--------CFICKKGGHRAKDCPDKH--KSGFQNAQVCL 253
K CF CG + H + C++ Q CF C + GH +KDCP++ KSG C
Sbjct: 1449 KGCFKCGKVGHMAKDCTEPQQQGRKQSGACFKCNQEGHMSKDCPNQQQKKSG------CF 1502
Query: 254 KCGDSGHDMFSCRNSYSLDDLKEV--QCYICRCFGHLC--CVNISDAVPGEVSCFRCGQL 309
KCG+ GH C N K C+ C GH+ C N + +CF+C Q
Sbjct: 1503 KCGEEGHFSKDCPNPQKQQQQKPRGGACFKCGEEGHISKDCPN-PQKQQQKNTCFKCKQE 1561
Query: 310 GH 311
GH
Sbjct: 1562 GH 1563
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 220 SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQC 279
+K + CF C K GH AKDC + + G + + C KC GH C N K+ C
Sbjct: 1446 NKGKGCFKCGKVGHMAKDCTEPQQQGRKQSGACFKCNQEGHMSKDCPN----QQQKKSGC 1501
Query: 280 YICRCFGHLC--CVNISDAVPGEV---SCFRCGQLGH 311
+ C GH C N + +CF+CG+ GH
Sbjct: 1502 FKCGEEGHFSKDCPNPQKQQQQKPRGGACFKCGEEGH 1538
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK 221
+ G C+NC +EGHM+ +C + ++KK CF CG H R+C+K
Sbjct: 1573 NSGGNKCFNCNQEGHMSKDCPNPSQKKKGCFNCGEEGHQSRECTK 1617
>gi|146182859|ref|XP_001025435.2| Zinc knuckle family protein [Tetrahymena thermophila]
gi|146143687|gb|EAS05190.2| Zinc knuckle family protein [Tetrahymena thermophila SB210]
Length = 1748
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 64/142 (45%), Gaps = 20/142 (14%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD----------CFICKKG 231
C+ C +EGHM+ +C + ++K CF CG H + C Q CF C +
Sbjct: 1477 ACFKCNQEGHMSKDCPNQQQKKSGCFKCGEEGHFSKDCPNPQKQQQQKPRGGACFKCGEE 1536
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC-- 289
GH +KDCP+ K Q C KC GH C NS + K C+ C GH+
Sbjct: 1537 GHISKDCPNPQKQ--QQKNTCFKCKQEGHISKDCPNSQNSGGNK---CFNCNQEGHMSKD 1591
Query: 290 CVNISDAVPGEVSCFRCGQLGH 311
C N S G CF CG+ GH
Sbjct: 1592 CPNPSQKKKG---CFNCGEEGH 1610
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 65/141 (46%), Gaps = 16/141 (11%)
Query: 183 CYNCGEEGHMAVNC----RSAVKRKKPCFVCGSLEHGVRQCSKAQD----CFICKKGGHR 234
C+ CG+ GHMA +C + K+ CF C H + C Q CF C + GH
Sbjct: 1451 CFKCGKVGHMAKDCTEPQQQGRKQSGACFKCNQEGHMSKDCPNQQQKKSGCFKCGEEGHF 1510
Query: 235 AKDCPDKHKSGFQNAQ--VCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--C 290
+KDCP+ K Q + C KCG+ GH C N ++ C+ C+ GH+ C
Sbjct: 1511 SKDCPNPQKQQQQKPRGGACFKCGEEGHISKDCPNPQK--QQQKNTCFKCKQEGHISKDC 1568
Query: 291 VNISDAVPGEVSCFRCGQLGH 311
N ++ G CF C Q GH
Sbjct: 1569 PNSQNS--GGNKCFNCNQEGH 1587
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKR--KKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGHR 234
C+ CGEEGH++ +C + K+ K CF C H + C +Q+ CF C + GH
Sbjct: 1529 ACFKCGEEGHISKDCPNPQKQQQKNTCFKCKQEGHISKDCPNSQNSGGNKCFNCNQEGHM 1588
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+KDCP+ Q + C CG+ GH C
Sbjct: 1589 SKDCPNPS----QKKKGCFNCGEEGHQSREC 1615
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 55/122 (45%), Gaps = 21/122 (17%)
Query: 204 KPCFVCGSLEHGVRQCSKAQD--------CFICKKGGHRAKDCPDKH--KSGFQNAQVCL 253
K CF CG + H + C++ Q CF C + GH +KDCP++ KSG C
Sbjct: 1449 KGCFKCGKVGHMAKDCTEPQQQGRKQSGACFKCNQEGHMSKDCPNQQQKKSG------CF 1502
Query: 254 KCGDSGHDMFSCRNSYSLDDLKEV--QCYICRCFGHLC--CVNISDAVPGEVSCFRCGQL 309
KCG+ GH C N K C+ C GH+ C N + +CF+C Q
Sbjct: 1503 KCGEEGHFSKDCPNPQKQQQQKPRGGACFKCGEEGHISKDCPN-PQKQQQKNTCFKCKQE 1561
Query: 310 GH 311
GH
Sbjct: 1562 GH 1563
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 220 SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQC 279
+K + CF C K GH AKDC + + G + + C KC GH C N K+ C
Sbjct: 1446 NKGKGCFKCGKVGHMAKDCTEPQQQGRKQSGACFKCNQEGHMSKDCPN----QQQKKSGC 1501
Query: 280 YICRCFGHLC--CVNISDAVPGEV---SCFRCGQLGH 311
+ C GH C N + +CF+CG+ GH
Sbjct: 1502 FKCGEEGHFSKDCPNPQKQQQQKPRGGACFKCGEEGH 1538
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK 221
+ G C+NC +EGHM+ +C + ++KK CF CG H R+C+K
Sbjct: 1573 NSGGNKCFNCNQEGHMSKDCPNPSQKKKGCFNCGEEGHQSRECTK 1617
>gi|320040571|gb|EFW22504.1| zinc knuckle protein [Coccidioides posadasii str. Silveira]
gi|392862016|gb|EAS37384.2| zinc knuckle domain-containing protein [Coccidioides immitis RS]
Length = 199
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 74/158 (46%), Gaps = 27/158 (17%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA--------QDC 225
D P +G CYNCG EGH++ +C K +K C+ CG H R C +A Q+C
Sbjct: 19 DCPKKGSVICYNCGGEGHVSRDCNEPAK-EKSCYRCGLTGHISRDCPQAGESGGARGQEC 77
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC------------RNSYSLDD 273
+ C + GH +++CP +SG Q C KCG GH +C SY +
Sbjct: 78 YKCGQVGHISRECPQGGESGEARGQECYKCGQVGHISRNCGQYSGYNGGGYNAGSYRYGN 137
Query: 274 LKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
+ + CY C +GH D G+ C+ CG+ GH
Sbjct: 138 -RPLTCYSCGGYGH----RARDCTQGQ-KCYNCGETGH 169
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 19/102 (18%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK---------------RKKPCFVCGSLEHGVRQCSKAQDC 225
Q CY CG+ GH++ NC R C+ CG H R C++ Q C
Sbjct: 102 QECYKCGQVGHISRNCGQYSGYNGGGYNAGSYRYGNRPLTCYSCGGYGHRARDCTQGQKC 161
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
+ C + GH ++DC + K +VC KC GH +C N
Sbjct: 162 YNCGETGHVSRDCTTEGK----GERVCYKCKQPGHVQAACPN 199
>gi|400621674|gb|AFP87471.1| vasa-like protein, partial [Nematostella vectensis]
Length = 906
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 64/148 (43%), Gaps = 13/148 (8%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRK--KPCFVCGSLEHGVRQCSKAQD-------C 225
P G + C+ CGEEGH A C + + + C CG H R+C C
Sbjct: 214 PSQGGARACHKCGEEGHFARECPNQPSQGGGRACHKCGEEGHFARECPNQPSQGGWCLTC 273
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCF 285
C++ GH A+DCP++ G C KCG GH C N S C+ C
Sbjct: 274 HKCREEGHYARDCPNQPSQGMGGGGACHKCGKEGHFSRECPNQDSQRIGGGRNCHKCGQE 333
Query: 286 GHLC--CVNISDAVPGEVSCFRCGQLGH 311
GH C N + G +C +CG++GH
Sbjct: 334 GHFSRECPNQTSQ--GSGTCHKCGEVGH 359
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 68/145 (46%), Gaps = 15/145 (10%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRK---KPCFVCGSLEHGVRQCSK------AQDCFICK 229
G C+ CG+EGH + +C + R+ + C CG H R+C A+ C C
Sbjct: 167 GGGACHRCGQEGHFSRDCPNPPTRQGNGRACHKCGEEGHFARECPNQPSQGGARACHKCG 226
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL- 288
+ GH A++CP++ G + C KCG+ GH C N S + C+ CR GH
Sbjct: 227 EEGHFARECPNQPSQG--GGRACHKCGEEGHFARECPNQPSQGGWC-LTCHKCREEGHYA 283
Query: 289 --CCVNISDAVPGEVSCFRCGQLGH 311
C S + G +C +CG+ GH
Sbjct: 284 RDCPNQPSQGMGGGGACHKCGKEGH 308
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 20/127 (15%)
Query: 175 PPDRGW-QTCYNCGEEGHMAVNCRSAVKRKK----PCFVCGSLEHGVRQCSK-------- 221
P GW TC+ C EEGH A +C + + C CG H R+C
Sbjct: 264 PSQGGWCLTCHKCREEGHYARDCPNQPSQGMGGGGACHKCGKEGHFSRECPNQDSQRIGG 323
Query: 222 AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYI 281
++C C + GH +++CP++ G + C KCG+ GH C D C+
Sbjct: 324 GRNCHKCGQEGHFSRECPNQTSQG---SGTCHKCGEVGHFARECPTGRGQSDT----CHK 376
Query: 282 CRCFGHL 288
C GH
Sbjct: 377 CGETGHY 383
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRK----KPCFVCGSLEHGVRQCSK-----AQDCFICK 229
G C+ CG+EGH + C + ++ + C CG H R+C + C C
Sbjct: 296 GGGACHKCGKEGHFSRECPNQDSQRIGGGRNCHKCGQEGHFSRECPNQTSQGSGTCHKCG 355
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ GH A++CP +G + C KCG++GH C
Sbjct: 356 EVGHFARECP----TGRGQSDTCHKCGETGHYSREC 387
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKK-PCFVCGSLEHGVRQCS----KAQDCFICKKGGH 233
G + C+ CG+EGH + C + + C CG + H R+C ++ C C + GH
Sbjct: 323 GGRNCHKCGQEGHFSRECPNQTSQGSGTCHKCGEVGHFARECPTGRGQSDTCHKCGETGH 382
Query: 234 RAKDCPDKHKSGF 246
+++CP G
Sbjct: 383 YSRECPTLGNGGL 395
>gi|3661541|gb|AAC61751.1| poly-zinc finger protein 1 [Trypanosoma cruzi]
Length = 193
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 17/148 (11%)
Query: 179 GWQTCYNCGEEGHMAVNCRS---AVKRKKPCFVCGSLEHGVRQCSK-------AQDCFIC 228
G + CYNCG+ GH++ C + + C+ CG H R+C + C+ C
Sbjct: 42 GDRACYNCGQPGHLSRGCPTRPPGAMGGRACYNCGQPGHPSRECPTRPPGAMGGRACYNC 101
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC--RNSYSLDDLKEVQCYICRCFG 286
+ GH +++CP + G + C KCG GH C R + + CY C+ G
Sbjct: 102 GQPGHLSRECPTR-PPGTMGDRACYKCGRMGHLSRECPNRPAGGFRGVARGACYHCQQEG 160
Query: 287 HLC--CVNISDAVPGEVSCFRCGQLGHT 312
HL C N GE +C+ CGQ GHT
Sbjct: 161 HLARDCPNAPPG--GERACYNCGQTGHT 186
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 179 GWQTCYNCGEEGHMAVNCRS---AVKRKKPCFVCGSLEHGVRQCSKAQ----------DC 225
G + CYNCG+ GH++ C + + C+ CG + H R+C C
Sbjct: 94 GGRACYNCGQPGHLSRECPTRPPGTMGDRACYKCGRMGHLSRECPNRPAGGFRGVARGAC 153
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ C++ GH A+DCP+ G + C CG +GH +C
Sbjct: 154 YHCQQEGHLARDCPNAPPGG---ERACYNCGQTGHTSRAC 190
>gi|164656387|ref|XP_001729321.1| hypothetical protein MGL_3356 [Malassezia globosa CBS 7966]
gi|159103212|gb|EDP42107.1| hypothetical protein MGL_3356 [Malassezia globosa CBS 7966]
Length = 171
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 69/145 (47%), Gaps = 13/145 (8%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ--------DCFI 227
P G TCYNCG++GH++V+C + K CF C H R+C A+ +C+
Sbjct: 21 PSAGNPTCYNCGQQGHVSVDCTNQPVPKT-CFRCNEAGHVSRECPHAEARGDAAAGECYR 79
Query: 228 CKKGGHRAKDCPDKHKSGF-QNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFG 286
C + GH A+ CP SG +N + C CG GH C ++ ++CY C G
Sbjct: 80 CGETGHIARMCPVSGGSGAPRNPRACYNCGGVGHLSRDCSSAPGAAATASMKCYNCGNMG 139
Query: 287 HLCCVNISDAVPGEVSCFRCGQLGH 311
HL + P + SC+ CG H
Sbjct: 140 HL---SRECPRPSQRSCYTCGSSDH 161
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 61/139 (43%), Gaps = 9/139 (6%)
Query: 180 WQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK---AQDCFICKKGGHRAK 236
++CYNCG GH C SA C+ CG H C+ + CF C + GH ++
Sbjct: 4 MRSCYNCGRPGHTIAACPSAGNPT--CYNCGQQGHVSVDCTNQPVPKTCFRCNEAGHVSR 61
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQ-CYICRCFGHL---CCVN 292
+CP G A C +CG++GH C S + + CY C GHL C
Sbjct: 62 ECPHAEARGDAAAGECYRCGETGHIARMCPVSGGSGAPRNPRACYNCGGVGHLSRDCSSA 121
Query: 293 ISDAVPGEVSCFRCGQLGH 311
A + C+ CG +GH
Sbjct: 122 PGAAATASMKCYNCGNMGH 140
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSA----VKRKKPCFVCGSLEHGVRQCSKA--QDCFICKK 230
R + CYNCG GH++ +C SA C+ CG++ H R+C + + C+ C
Sbjct: 99 PRNPRACYNCGGVGHLSRDCSSAPGAAATASMKCYNCGNMGHLSRECPRPSQRSCYTCGS 158
Query: 231 GGHRAKDCPD 240
H A CP
Sbjct: 159 SDHLAAQCPQ 168
>gi|157876792|ref|XP_001686738.1| putative universal minicircle sequence binding protein [Leishmania
major strain Friedlin]
gi|68129813|emb|CAJ09119.1| putative universal minicircle sequence binding protein [Leishmania
major strain Friedlin]
Length = 271
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 68/163 (41%), Gaps = 33/163 (20%)
Query: 182 TCYNCGEEGHMAVNC----RSAVKRKKPCFVCGSLEHGVRQC--------SKAQDCFICK 229
TC+ CGEEGHM+ C RS CF CG H R C +K +C+ C
Sbjct: 44 TCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCG 103
Query: 230 KGGHRAKDCPDKH----------------KSGFQNAQVCLKCGDSGHDMFSCRNSY-SLD 272
+ GH ++DCP + G+ + C KCGD+GH C N
Sbjct: 104 QEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYS 163
Query: 273 DLKEVQCYICRCFGHLC--CVNISDAV--PGEVSCFRCGQLGH 311
+ CY C GH+ C N G+ C++CG+ GH
Sbjct: 164 GAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGH 206
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 71/166 (42%), Gaps = 34/166 (20%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD---------- 224
G TC+ CGE GHM+ +C ++ K C+ CG H R C +Q
Sbjct: 68 GAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKR 127
Query: 225 --------------CFICKKGGHRAKDCPDKHKSGFQNA--QVCLKCGDSGHDMFSCRNS 268
C+ C GH ++DCP+ + G+ A + C KCGD+GH C N
Sbjct: 128 GRSGAQGGYSGDRTCYKCGDAGHISRDCPNG-QGGYSGAGDRTCYKCGDAGHISRDCPNG 186
Query: 269 Y-SLDDLKEVQCYICRCFGHLC--CVNISDAVPGEVSCFRCGQLGH 311
+ +CY C GH+ C + + +C++CG+ GH
Sbjct: 187 QGGYSGAGDRKCYKCGESGHMSRECPSAGSTGSSDRACYKCGKPGH 232
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 67/162 (41%), Gaps = 32/162 (19%)
Query: 182 TCYNCGEEGHMAVNCRSA----VKRKKPCFVCGSLEHGVRQC--------SKAQDCFICK 229
+C NCG+EGH A C A +R CF CG H R+C + A CF C
Sbjct: 17 SCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCG 76
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC-------RNSYSLDDLK------- 275
+ GH ++DCP+ K G C KCG GH C R Y +
Sbjct: 77 EAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGY 136
Query: 276 --EVQCYICRCFGHLC--CVNISDAV--PGEVSCFRCGQLGH 311
+ CY C GH+ C N G+ +C++CG GH
Sbjct: 137 SGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGH 178
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 72/172 (41%), Gaps = 50/172 (29%)
Query: 183 CYNCGEEGHMAVNCRSAV---------KRKKP-----------CFVCGSLEHGVRQCSKA 222
CY CG+EGH++ +C S+ KR + C+ CG H R C
Sbjct: 99 CYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNG 158
Query: 223 QD---------CFICKKGGHRAKDCPDKHKSGFQNA--QVCLKCGDSGHDMFSCRNSYSL 271
Q C+ C GH ++DCP+ + G+ A + C KCG+SGH C ++ S
Sbjct: 159 QGGYSGAGDRTCYKCGDAGHISRDCPNG-QGGYSGAGDRKCYKCGESGHMSRECPSAGST 217
Query: 272 DDLKEVQCYICRCFGHLCCVNISDAVP------------GEVSCFRCGQLGH 311
CY C GH IS P G+ +C++CG+ GH
Sbjct: 218 GSSDRA-CYKCGKPGH-----ISRECPEAGGSYGGSRGGGDRTCYKCGEAGH 263
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 20/108 (18%)
Query: 179 GWQTCYNCGEEGHMAVNC-------RSAVKRKKPCFVCGSLEHGVRQCSKA-------QD 224
G +TCY CG+ GH++ +C A RK C+ CG H R+C A +
Sbjct: 166 GDRTCYKCGDAGHISRDCPNGQGGYSGAGDRK--CYKCGESGHMSRECPSAGSTGSSDRA 223
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNA----QVCLKCGDSGHDMFSCRNS 268
C+ C K GH +++CP+ S + + C KCG++GH C +S
Sbjct: 224 CYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCPSS 271
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 247 QNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSC 303
+++ C CG GH C + S D + C+ C GH+ C G ++C
Sbjct: 13 ESSTSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTC 72
Query: 304 FRCGQLGH 311
FRCG+ GH
Sbjct: 73 FRCGEAGH 80
>gi|729704|sp|Q04832.1|HEXP_LEIMA RecName: Full=DNA-binding protein HEXBP; AltName:
Full=Hexamer-binding protein
gi|159342|gb|AAA29245.1| HEXBP DNA binding protein [Leishmania major]
Length = 271
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 68/163 (41%), Gaps = 33/163 (20%)
Query: 182 TCYNCGEEGHMAVNC----RSAVKRKKPCFVCGSLEHGVRQC--------SKAQDCFICK 229
TC+ CGEEGHM+ C RS CF CG H R C +K +C+ C
Sbjct: 44 TCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCG 103
Query: 230 KGGHRAKDCPDKH----------------KSGFQNAQVCLKCGDSGHDMFSCRNSY-SLD 272
+ GH ++DCP + G+ + C KCGD+GH C N
Sbjct: 104 QEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYS 163
Query: 273 DLKEVQCYICRCFGHLC--CVNISDAV--PGEVSCFRCGQLGH 311
+ CY C GH+ C N G+ C++CG+ GH
Sbjct: 164 GAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGH 206
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 34/166 (20%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD---------- 224
G TC+ CGE GHM+ +C ++ K C+ CG H R C +Q
Sbjct: 68 GAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKR 127
Query: 225 --------------CFICKKGGHRAKDCPDKHKSGFQNA--QVCLKCGDSGHDMFSCRNS 268
C+ C GH ++DCP+ + G+ A + C KCGD+GH C N
Sbjct: 128 GRSGAQGGYSGDRTCYKCGDAGHISRDCPNG-QGGYSGAGDRTCYKCGDAGHISRDCPNG 186
Query: 269 Y-SLDDLKEVQCYICRCFGHLC--CVNISDAVPGEVSCFRCGQLGH 311
+ +CY C GH+ C + G+ +C++CG+ GH
Sbjct: 187 QGGYSGAGDRKCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGH 232
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 67/162 (41%), Gaps = 32/162 (19%)
Query: 182 TCYNCGEEGHMAVNCRSA----VKRKKPCFVCGSLEHGVRQC--------SKAQDCFICK 229
+C NCG+EGH A C A +R CF CG H R+C + A CF C
Sbjct: 17 SCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCG 76
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC-------RNSYSLDDLK------- 275
+ GH ++DCP+ K G C KCG GH C R Y +
Sbjct: 77 EAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGY 136
Query: 276 --EVQCYICRCFGHLC--CVNISDAV--PGEVSCFRCGQLGH 311
+ CY C GH+ C N G+ +C++CG GH
Sbjct: 137 SGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGH 178
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 20/108 (18%)
Query: 179 GWQTCYNCGEEGHMAVNC-------RSAVKRKKPCFVCGSLEHGVRQCSKA-------QD 224
G +TCY CG+ GH++ +C A RK C+ CG H R+C A +
Sbjct: 166 GDRTCYKCGDAGHISRDCPNGQGGYSGAGDRK--CYKCGESGHMSRECPSAGSTGSGDRA 223
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNA----QVCLKCGDSGHDMFSCRNS 268
C+ C K GH +++CP+ S + + C KCG++GH C +S
Sbjct: 224 CYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCPSS 271
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 247 QNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSC 303
+++ C CG GH C + S D + C+ C GH+ C G ++C
Sbjct: 13 ESSTSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTC 72
Query: 304 FRCGQLGH 311
FRCG+ GH
Sbjct: 73 FRCGEAGH 80
>gi|340057209|emb|CCC51551.1| putative universal minicircle sequence binding protein (UMSBP)
[Trypanosoma vivax Y486]
Length = 198
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 68/155 (43%), Gaps = 20/155 (12%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNC----RSAVKRKKPCFVCGSLEHGVRQCSK-------AQ 223
P G + CYNCG+ GH++ C AV + CF CG H R C +
Sbjct: 38 PGAMGDRACYNCGQPGHLSRECPTMPHGAVGGARACFTCGQFGHLSRDCPGMRGAGFGGR 97
Query: 224 DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH---DMFSCRNSYSLDDLKEVQCY 280
C+ C + GH ++DCP + C CG GH D + R +Y + CY
Sbjct: 98 ACYNCGQPGHISRDCPGMRGGSSFGGRSCYNCGKVGHISRDCPTARGAYGGPQTRS--CY 155
Query: 281 ICRCFGHLC--CVNIS--DAVPGEVSCFRCGQLGH 311
C+ GH+ C N AV G +C+ CGQ GH
Sbjct: 156 HCQQEGHIARDCPNAPADGAVRGGGACYNCGQPGH 190
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 60/148 (40%), Gaps = 16/148 (10%)
Query: 179 GWQTCYNCGEEGHMAVNCRS---AVKRKKPCFVCGSLEHGVRQC--------SKAQDCFI 227
G +CY CGE GH A C + + C+ CG H R+C A+ CF
Sbjct: 16 GASSCYRCGEAGHFARECTNVPPGAMGDRACYNCGQPGHLSRECPTMPHGAVGGARACFT 75
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGH 287
C + GH ++DCP +GF + C CG GH C CY C GH
Sbjct: 76 CGQFGHLSRDCPGMRGAGF-GGRACYNCGQPGHISRDCPGMRGGSSFGGRSCYNCGKVGH 134
Query: 288 LC--CVNISDAV--PGEVSCFRCGQLGH 311
+ C A P SC+ C Q GH
Sbjct: 135 ISRDCPTARGAYGGPQTRSCYHCQQEGH 162
>gi|318087050|gb|ADV40117.1| putative E3 ubiquitin ligase [Latrodectus hesperus]
Length = 175
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 18/138 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA--------QDCFICKKGGH 233
+CYNCG GH A CR + K C+ CG H R C++ C+ C K GH
Sbjct: 41 SCYNCGRSGHFARECRES---DKTCYSCGKSGHISRDCTQGGGGGSDRKMTCYTCGKPGH 97
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNI 293
++DCP++ ++ + C CGD+GH C + D + CY C GH+ N
Sbjct: 98 ASRDCPNE-----RDDRKCYSCGDTGHISRDCPEGGNAGDNDDTVCYRCNESGHI-ARNC 151
Query: 294 SDAVPGEVSCFRCGQLGH 311
++ P C+ CG++GH
Sbjct: 152 RNSRPSN-KCYSCGEVGH 168
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 12/115 (10%)
Query: 181 QTCYNCGEEGHMAVNCR----SAVKRKKPCFVCGSLEHGVRQCSKAQD---CFICKKGGH 233
+TCY+CG+ GH++ +C RK C+ CG H R C +D C+ C GH
Sbjct: 60 KTCYSCGKSGHISRDCTQGGGGGSDRKMTCYTCGKPGHASRDCPNERDDRKCYSCGDTGH 119
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
++DCP+ +G + VC +C +SGH +CRNS + +CY C GH+
Sbjct: 120 ISRDCPEGGNAGDNDDTVCYRCNESGHIARNCRNSRPSN-----KCYSCGEVGHI 169
>gi|71654802|ref|XP_816013.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70881113|gb|EAN94162.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 503
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 58/131 (44%), Gaps = 24/131 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C+ C + GHMA C + R CF CGS H + C CF C GHR+ DCP K
Sbjct: 92 CFQCHQRGHMAPTC--PLTR---CFNCGSYGHSSQLCYSRPLCFHCSLAGHRSTDCPMKP 146
Query: 243 KSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVS 302
K +VC +C + GH+M C + C++C GHL A E
Sbjct: 147 K-----GRVCYRCKEPGHEMAECTQT--------ALCHMCNQAGHLV------AQCPEAV 187
Query: 303 CFRCGQLGHTG 313
C C + GHT
Sbjct: 188 CNLCHERGHTA 198
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 52/141 (36%), Gaps = 30/141 (21%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP--------CFVCGSLEHGVRQC---SKAQDCFICKK 230
TC CG GH +C S KR + C CGS H C S++ +CF C +
Sbjct: 38 TCRACGRLGHFKEDCPSEKKRARAEEDGEVSVCRSCGSSRHVKASCPLRSQSVECFQCHQ 97
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCC 290
GH A CP C CG GH C YS C+ C GH
Sbjct: 98 RGHMAPTCP---------LTRCFNCGSYGHSSQLC---YS-----RPLCFHCSLAGHR-- 138
Query: 291 VNISDAVPGEVSCFRCGQLGH 311
P C+RC + GH
Sbjct: 139 STDCPMKPKGRVCYRCKEPGH 159
>gi|71651603|ref|XP_814476.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70879451|gb|EAN92625.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 503
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 58/131 (44%), Gaps = 24/131 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C+ C + GHMA C + R CF CGS H + C CF C GHR+ DCP K
Sbjct: 92 CFQCHQRGHMAPTC--PLTR---CFNCGSYGHSSQLCYSRPLCFHCSLAGHRSTDCPMKP 146
Query: 243 KSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVS 302
K +VC +C + GH+M C + C++C GHL A E
Sbjct: 147 K-----GRVCYRCKEPGHEMAECTQT--------ALCHMCNQAGHLV------AQCPEAV 187
Query: 303 CFRCGQLGHTG 313
C C + GHT
Sbjct: 188 CNLCHERGHTA 198
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 52/141 (36%), Gaps = 30/141 (21%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP--------CFVCGSLEHGVRQC---SKAQDCFICKK 230
TC CG GH +C S KR + C CGS H C S++ +CF C +
Sbjct: 38 TCRACGRLGHFKEDCPSEKKRARAEEDGEVSVCRSCGSSRHVKASCPLRSQSVECFQCHQ 97
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCC 290
GH A CP C CG GH C YS C+ C GH
Sbjct: 98 RGHMAPTCP---------LTRCFNCGSYGHSSQLC---YS-----RPLCFHCSLAGHR-- 138
Query: 291 VNISDAVPGEVSCFRCGQLGH 311
P C+RC + GH
Sbjct: 139 STDCPMKPKGRVCYRCKEPGH 159
>gi|407399797|gb|EKF28436.1| hypothetical protein MOQ_007815 [Trypanosoma cruzi marinkellei]
Length = 509
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 58/131 (44%), Gaps = 24/131 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C+ C + GHMA C + R CF CGS H + C CF C GHR+ DCP K
Sbjct: 98 CFQCHQRGHMAPTC--PLTR---CFNCGSYGHSSQLCYSRPLCFHCSLAGHRSTDCPMKP 152
Query: 243 KSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVS 302
K +VC +C + GH+M C + C++C GHL A E
Sbjct: 153 K-----GRVCYRCKEPGHEMAECTQT--------ALCHMCNQAGHLI------AQCPEAI 193
Query: 303 CFRCGQLGHTG 313
C C + GHT
Sbjct: 194 CNLCHERGHTA 204
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 52/141 (36%), Gaps = 30/141 (21%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP--------CFVCGSLEHGVRQC---SKAQDCFICKK 230
TC CG GH +C S KR + C CGS H C S++ +CF C +
Sbjct: 44 TCRACGRLGHFKEDCPSENKRARAEEDGEVSVCRSCGSSRHVKASCPLRSQSVECFQCHQ 103
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCC 290
GH A CP C CG GH C YS C+ C GH
Sbjct: 104 RGHMAPTCP---------LTRCFNCGSYGHSSQLC---YS-----RPLCFHCSLAGHR-- 144
Query: 291 VNISDAVPGEVSCFRCGQLGH 311
P C+RC + GH
Sbjct: 145 STDCPMKPKGRVCYRCKEPGH 165
>gi|401420042|ref|XP_003874510.1| putative universal minicircle sequence binding protein (UMSBP)
[Leishmania mexicana MHOM/GT/2001/U1103]
gi|322490746|emb|CBZ26010.1| putative universal minicircle sequence binding protein (UMSBP)
[Leishmania mexicana MHOM/GT/2001/U1103]
Length = 298
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 68/163 (41%), Gaps = 33/163 (20%)
Query: 182 TCYNCGEEGHMAVNC----RSAVKRKKPCFVCGSLEHGVRQC--------SKAQDCFICK 229
TC+ CGEEGHM+ C RS CF CG H R C +K +C+ C
Sbjct: 44 TCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKQGAAKGFECYKCG 103
Query: 230 KGGHRAKDCPDKH----------------KSGFQNAQVCLKCGDSGHDMFSCRNSY-SLD 272
+ GH ++DCP + G+ + C KCGD+GH C N
Sbjct: 104 QEGHLSRDCPSSQGGSRGGYGQKRGRNGAQGGYGGDRACYKCGDAGHISRDCPNGQGGYS 163
Query: 273 DLKEVQCYICRCFGHLC--CVNISDAV--PGEVSCFRCGQLGH 311
+ CY C GH+ C N G+ C++CG+ GH
Sbjct: 164 GAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGH 206
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 34/166 (20%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD---------- 224
G TC+ CGE GHM+ +C ++ K+ C+ CG H R C +Q
Sbjct: 68 GAMTCFRCGEAGHMSRDCPNSAKQGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKR 127
Query: 225 --------------CFICKKGGHRAKDCPDKHKSGFQNA--QVCLKCGDSGHDMFSCRNS 268
C+ C GH ++DCP+ + G+ A + C KCGD+GH C N
Sbjct: 128 GRNGAQGGYGGDRACYKCGDAGHISRDCPNG-QGGYSGAGDRTCYKCGDAGHISRDCPNG 186
Query: 269 Y-SLDDLKEVQCYICRCFGHLC--CVNISDAVPGEVSCFRCGQLGH 311
+ +CY C GH+ C + G+ +C++CG+ GH
Sbjct: 187 QGGYSGAGDRKCYKCGESGHISRECPSAGSTGSGDRTCYKCGKPGH 232
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 65/161 (40%), Gaps = 32/161 (19%)
Query: 183 CYNCGEEGHMAVNCRSA----VKRKKPCFVCGSLEHGVRQC--------SKAQDCFICKK 230
C NCG+EGH A C A +R CF CG H R+C + A CF C +
Sbjct: 18 CRNCGKEGHYARECPEADSKGDERSSTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGE 77
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC----------------RNSYSLDDL 274
GH ++DCP+ K G C KCG GH C RN
Sbjct: 78 AGHMSRDCPNSAKQGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRNGAQGGYG 137
Query: 275 KEVQCYICRCFGHLC--CVNISDAV--PGEVSCFRCGQLGH 311
+ CY C GH+ C N G+ +C++CG GH
Sbjct: 138 GDRACYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGH 178
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 179 GWQTCYNCGEEGHMAVNCRS-----AVKRKKPCFVCGSLEHGVRQCSKAQD--------- 224
G + CY CG+ GH++ +C + + + C+ CG H R C Q
Sbjct: 138 GDRACYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRK 197
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLK-----EVQC 279
C+ C + GH +++CP +G + + C KCG GH C + + C
Sbjct: 198 CYKCGESGHISRECPSAGSTGSGD-RTCYKCGKPGHISRECPEAGGSYGGSRGGGSDRTC 256
Query: 280 YICRCFGHLC--CVNISDAVPGEVSCFRCGQLGH 311
Y C GH+ C + G+ +C++CG+ GH
Sbjct: 257 YKCGEAGHMSRECPSAGGTGSGDRACYKCGEAGH 290
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 17/106 (16%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRK---KPCFVCGSLEHGVRQCSKA------------- 222
G + CY CGE GH++ C SA + C+ CG H R+C +A
Sbjct: 194 GDRKCYKCGESGHISRECPSAGSTGSGDRTCYKCGKPGHISRECPEAGGSYGGSRGGGSD 253
Query: 223 QDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
+ C+ C + GH +++CP +G + + C KCG++GH C +S
Sbjct: 254 RTCYKCGEAGHMSRECPSAGGTGSGD-RACYKCGEAGHISRDCPSS 298
>gi|320580572|gb|EFW94794.1| zinc finger protein, putative [Ogataea parapolymorpha DL-1]
Length = 390
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKK-PCFVCGSLEHGVRQC-SKAQDCFICKKGGH 233
P R CYNCG+ GH+A C +A K C CG L H R C S C+ C K GH
Sbjct: 294 PLRPVSKCYNCGKIGHLAKGCSAARGGPKVTCHKCGGLNHFARDCQSGVVKCYACGKTGH 353
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
+KDC NA+ C KCG+SGH
Sbjct: 354 ISKDCTSASGGSNFNAKTCYKCGESGH 380
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 55/136 (40%), Gaps = 19/136 (13%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA-----QDCFICKKGGHRA 235
+TCY CG+ GH A C+ ++ C+ C H C + + C+ CK+ GH
Sbjct: 232 RTCYKCGQVGHFADACQET---ERLCYNCKQPGHESGDCPEPKQTTQKQCYNCKQTGHVQ 288
Query: 236 KDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISD 295
+C + + C CG GH C + +V C+ C H D
Sbjct: 289 SECSEP----LRPVSKCYNCGKIGHLAKGCS---AARGGPKVTCHKCGGLNHF----ARD 337
Query: 296 AVPGEVSCFRCGQLGH 311
G V C+ CG+ GH
Sbjct: 338 CQSGVVKCYACGKTGH 353
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 18/137 (13%)
Query: 183 CYNCGEEGHMAVNCRSAVKR-KKPCFVCGSLEHGVRQCSK----AQDCFICKKGGHRAKD 237
CYNC + GH + +C + +K C+ C H +CS+ C+ C K GH AK
Sbjct: 254 CYNCKQPGHESGDCPEPKQTTQKQCYNCKQTGHVQSECSEPLRPVSKCYNCGKIGHLAKG 313
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISD 295
C + G + C KCG H C++ V+CY C GH+ C + S
Sbjct: 314 C-SAARGGPK--VTCHKCGGLNHFARDCQSGV-------VKCYACGKTGHISKDCTSASG 363
Query: 296 AVPGEV-SCFRCGQLGH 311
+C++CG+ GH
Sbjct: 364 GSNFNAKTCYKCGESGH 380
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA--------QDCFICKKGGH 233
TC+ CG H A +C+S V + C+ CG H + C+ A + C+ C + GH
Sbjct: 324 TCHKCGGLNHFARDCQSGVVK---CYACGKTGHISKDCTSASGGSNFNAKTCYKCGESGH 380
Query: 234 RAKDC 238
+K C
Sbjct: 381 ISKFC 385
>gi|146104187|ref|XP_001469754.1| putative universal minicircle sequence binding protein (UMSBP)
[Leishmania infantum JPCM5]
gi|398024252|ref|XP_003865287.1| universal minicircle sequence binding protein (UMSBP), putative
[Leishmania donovani]
gi|134074124|emb|CAM72866.1| putative universal minicircle sequence binding protein (UMSBP)
[Leishmania infantum JPCM5]
gi|322503524|emb|CBZ38610.1| universal minicircle sequence binding protein (UMSBP), putative
[Leishmania donovani]
Length = 271
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 67/163 (41%), Gaps = 33/163 (20%)
Query: 182 TCYNCGEEGHMAVNC----RSAVKRKKPCFVCGSLEHGVRQC--------SKAQDCFICK 229
TC+ CGEEGHM C RS CF CG H R C +K +C+ C
Sbjct: 44 TCFRCGEEGHMTRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYNCG 103
Query: 230 KGGHRAKDCPDKH----------------KSGFQNAQVCLKCGDSGHDMFSCRNSY-SLD 272
+ GH ++DCP + G+ + C KCGD+GH C N
Sbjct: 104 QEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYGGDRTCYKCGDAGHISRDCPNGQGGYS 163
Query: 273 DLKEVQCYICRCFGHLC--CVNISDAV--PGEVSCFRCGQLGH 311
+ CY C GH+ C N G+ C++CG+ GH
Sbjct: 164 GAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGH 206
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 34/166 (20%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD---------- 224
G TC+ CGE GHM+ +C ++ K C+ CG H R C +Q
Sbjct: 68 GAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYNCGQEGHLSRDCPSSQGGSRGGYGQKR 127
Query: 225 --------------CFICKKGGHRAKDCPDKHKSGFQNA--QVCLKCGDSGHDMFSCRNS 268
C+ C GH ++DCP+ + G+ A + C KCGD+GH C N
Sbjct: 128 GRSGAQGGYGGDRTCYKCGDAGHISRDCPNG-QGGYSGAGDRTCYKCGDAGHISRDCPNG 186
Query: 269 Y-SLDDLKEVQCYICRCFGHLC--CVNISDAVPGEVSCFRCGQLGH 311
+ +CY C GH+ C + G+ +C++CG+ GH
Sbjct: 187 QGGYSGAGDRKCYKCGESGHMSRECPSAGSNGSGDRTCYKCGKPGH 232
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 65/162 (40%), Gaps = 32/162 (19%)
Query: 182 TCYNCGEEGHMAVNCRSAVK----RKKPCFVCGSLEHGVRQC--------SKAQDCFICK 229
+C NCG+EGH A C A R CF CG H R+C + A CF C
Sbjct: 17 SCRNCGKEGHYARECPEADSKGDGRSTTCFRCGEEGHMTRECPNEARSGAAGAMTCFRCG 76
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC-------RNSYSLDDLK------- 275
+ GH ++DCP+ K G C CG GH C R Y +
Sbjct: 77 EAGHMSRDCPNSAKPGAAKGFECYNCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGY 136
Query: 276 --EVQCYICRCFGHLC--CVNISDAV--PGEVSCFRCGQLGH 311
+ CY C GH+ C N G+ +C++CG GH
Sbjct: 137 GGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGH 178
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 74/172 (43%), Gaps = 50/172 (29%)
Query: 183 CYNCGEEGHMAVNC-------RSAVKRKK-------------PCFVCGSLEHGVRQCSKA 222
CYNCG+EGH++ +C R +K+ C+ CG H R C
Sbjct: 99 CYNCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYGGDRTCYKCGDAGHISRDCPNG 158
Query: 223 QD---------CFICKKGGHRAKDCPDKHKSGFQNA--QVCLKCGDSGHDMFSCRNSYSL 271
Q C+ C GH ++DCP+ + G+ A + C KCG+SGH C ++ S
Sbjct: 159 QGGYSGAGDRTCYKCGDAGHISRDCPNG-QGGYSGAGDRKCYKCGESGHMSRECPSAGS- 216
Query: 272 DDLKEVQCYICRCFGHLCCVNISDAVP------------GEVSCFRCGQLGH 311
+ + CY C GH IS P G+ +C++CG+ GH
Sbjct: 217 NGSGDRTCYKCGKPGH-----ISRECPEAGGSYGGSRGGGDRTCYKCGEAGH 263
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 20/108 (18%)
Query: 179 GWQTCYNCGEEGHMAVNC-------RSAVKRKKPCFVCGSLEHGVRQCSKA-------QD 224
G +TCY CG+ GH++ +C A RK C+ CG H R+C A +
Sbjct: 166 GDRTCYKCGDAGHISRDCPNGQGGYSGAGDRK--CYKCGESGHMSRECPSAGSNGSGDRT 223
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNA----QVCLKCGDSGHDMFSCRNS 268
C+ C K GH +++CP+ S + + C KCG++GH C +S
Sbjct: 224 CYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCPSS 271
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 247 QNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSC 303
+++ C CG GH C + S D + C+ C GH+ C G ++C
Sbjct: 13 ESSTSCRNCGKEGHYARECPEADSKGDGRSTTCFRCGEEGHMTRECPNEARSGAAGAMTC 72
Query: 304 FRCGQLGH 311
FRCG+ GH
Sbjct: 73 FRCGEAGH 80
>gi|407837810|gb|EKF99870.1| hypothetical protein TCSYLVIO_009208 [Trypanosoma cruzi]
Length = 503
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 57/130 (43%), Gaps = 24/130 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C+ C + GHMA C + R CF CGS H + C CF C GHR+ DCP K
Sbjct: 92 CFQCHQRGHMAPTC--PLTR---CFNCGSYGHSAQLCYSRPLCFHCSLAGHRSTDCPMKP 146
Query: 243 KSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVS 302
K +VC +C + GH+M C + C++C GH A E
Sbjct: 147 K-----GRVCYRCKEPGHEMAECTQT--------ALCHMCNQAGHFI------AQCPEAV 187
Query: 303 CFRCGQLGHT 312
C C + GHT
Sbjct: 188 CNLCNERGHT 197
>gi|356574489|ref|XP_003555379.1| PREDICTED: uncharacterized protein LOC100783153 [Glycine max]
Length = 1410
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 10/115 (8%)
Query: 206 CFVCGSLEHGVRQCS------KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
CF+C +++H + C K + C C++ GHRAK+CP+ G ++A C CG++G
Sbjct: 72 CFICKAMDHIAKLCPEKAEWEKNKICLRCRRRGHRAKNCPEVL-DGAKDAMYCYNCGENG 130
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
H + C + K +C++C GHL C N P C CG + H
Sbjct: 131 HSLTQCPHPLQEGGTKFAECFVCNQRGHLSKNCPQNTHGIYPKGGCCKICGGVTH 185
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 12/75 (16%)
Query: 183 CYNCGEEGHMAVNCRSAVK----RKKPCFVCGSLEHGVRQCSKAQD--------CFICKK 230
CYNCGE GH C ++ + CFVC H + C + C IC
Sbjct: 123 CYNCGENGHSLTQCPHPLQEGGTKFAECFVCNQRGHLSKNCPQNTHGIYPKGGCCKICGG 182
Query: 231 GGHRAKDCPDKHKSG 245
H AKDCPDK KSG
Sbjct: 183 VTHLAKDCPDKGKSG 197
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 14/95 (14%)
Query: 180 WQ---TCYNCGEEGHMAVNCRSAV---KRKKPCFVCGSLEHGVRQC--------SKAQDC 225
W+ C C GH A NC + K C+ CG H + QC +K +C
Sbjct: 91 WEKNKICLRCRRRGHRAKNCPEVLDGAKDAMYCYNCGENGHSLTQCPHPLQEGGTKFAEC 150
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
F+C + GH +K+CP + C CG H
Sbjct: 151 FVCNQRGHLSKNCPQNTHGIYPKGGCCKICGGVTH 185
>gi|225707608|gb|ACO09650.1| Cellular nucleic acid-binding protein [Osmerus mordax]
Length = 165
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 26/143 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVK----------RKKPCFVCGSLEHGVRQCSKAQD-CFICKKG 231
C+ CG GH NC +A + + C+ CG H R C +++D C+ C +
Sbjct: 9 CFGCGRSGHWIKNCPNAGGRGRGRGRGRGKDQFCYRCGEQGHMARDCEQSEDACYNCHRT 68
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCV 291
GH ++DC + K + QVC CG +GH C D E +CY C FGH+
Sbjct: 69 GHISRDCKEPKK---EREQVCYSCGKAGHVARDC------DHANEQKCYSCGGFGHI--- 116
Query: 292 NISDAVPGEVSCFRCGQLGHTGL 314
+ +V C+RCG++GH +
Sbjct: 117 ---QKLCDKVKCYRCGEIGHVAV 136
Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CY+CG+ GH+A +C A ++K C+ CG H + C K + C+ C + GH
Sbjct: 77 EPKKEREQVCYSCGKAGHVARDCDHANEQK--CYSCGGFGHIQKLCDKVK-CYRCGEIGH 133
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
A C N C CG +GH
Sbjct: 134 VAVHCSK------SNEMNCYNCGKTGH 154
>gi|356534137|ref|XP_003535614.1| PREDICTED: uncharacterized protein LOC100804471 [Glycine max]
Length = 1241
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
Query: 206 CFVCGSLEHGVRQCS------KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
CF+C +++H + C K + C C++ GHRAK+CP+ G ++A+ C CG++G
Sbjct: 72 CFICKAMDHIAKLCPEKAEWEKNKICLRCRRRGHRAKNCPEV-LDGAKDAKYCYNCGENG 130
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
H + C + K +C++C GHL C N P C CG + H
Sbjct: 131 HALTQCLHPLQEGGTKFAECFVCNQRGHLSKNCPQNTHGIYPKGGCCKICGGVTH 185
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 12/75 (16%)
Query: 183 CYNCGEEGHMAVNCRSAVK----RKKPCFVCGSLEHGVRQCSKAQD--------CFICKK 230
CYNCGE GH C ++ + CFVC H + C + C IC
Sbjct: 123 CYNCGENGHALTQCLHPLQEGGTKFAECFVCNQRGHLSKNCPQNTHGIYPKGGCCKICGG 182
Query: 231 GGHRAKDCPDKHKSG 245
H AKDCPDK KSG
Sbjct: 183 VTHLAKDCPDKGKSG 197
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 14/95 (14%)
Query: 180 WQ---TCYNCGEEGHMAVNCRSAV---KRKKPCFVCGSLEHGVRQC--------SKAQDC 225
W+ C C GH A NC + K K C+ CG H + QC +K +C
Sbjct: 91 WEKNKICLRCRRRGHRAKNCPEVLDGAKDAKYCYNCGENGHALTQCLHPLQEGGTKFAEC 150
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
F+C + GH +K+CP + C CG H
Sbjct: 151 FVCNQRGHLSKNCPQNTHGIYPKGGCCKICGGVTH 185
>gi|358389553|gb|EHK27145.1| hypothetical protein TRIVIDRAFT_188061 [Trichoderma virens Gv29-8]
Length = 458
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 59/138 (42%), Gaps = 18/138 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHRAK 236
+CYNCG EGH +C K C CG H ++C + +C C K GH AK
Sbjct: 288 SCYNCGAEGHRVRDCPEPRVDKFACKNCGKSGHNAKECEEPPNMDNVECRKCNKTGHFAK 347
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNIS 294
DCPD ++ C CG GH C ++D+ V C C GH C
Sbjct: 348 DCPDG------GSRACRNCGQEGHISKECDQPKNMDN---VTCRNCEETGHFSKECPKPR 398
Query: 295 DAVPGEVSCFRCGQLGHT 312
D +V C C Q GHT
Sbjct: 399 DW--SKVQCSNCEQFGHT 414
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 206 CFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMF 263
CF CG H +C KA Q C CKK GH KDCP+ +C CG GH
Sbjct: 69 CFGCGEEGHRRAECPKAGEQTCHYCKKEGHMRKDCPEAP------PMLCSNCGQEGHFRN 122
Query: 264 SCRNSYSLD 272
SC N+ ++
Sbjct: 123 SCENARKIN 131
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 159 DNIVLRKLLRGPRYF-DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKK-PCFVCGSLEHGV 216
DN+ RK + + D PD G + C NCG+EGH++ C C C H
Sbjct: 332 DNVECRKCNKTGHFAKDCPDGGSRACRNCGQEGHISKECDQPKNMDNVTCRNCEETGHFS 391
Query: 217 RQCSKAQD-----CFICKKGGHRAKDC--PDKHKSGFQN 248
++C K +D C C++ GH C P K ++N
Sbjct: 392 KECPKPRDWSKVQCSNCEQFGHTKVRCKMPPKESDAYEN 430
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 10/112 (8%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFIC 228
+PP+ C C + GH A +C R C CG H ++C + ++ C C
Sbjct: 327 EPPNMDNVECRKCNKTGHFAKDCPDGGSRA--CRNCGQEGHISKECDQPKNMDNVTCRNC 384
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCY 280
++ GH +K+CP K + C C GH C+ D E Q Y
Sbjct: 385 EETGHFSKECP---KPRDWSKVQCSNCEQFGHTKVRCKMPPKESDAYENQGY 433
>gi|427788709|gb|JAA59806.1| Putative protein self-association [Rhipicephalus pulchellus]
Length = 856
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 70/153 (45%), Gaps = 22/153 (14%)
Query: 179 GWQTCYNCGEEGHMAVNCRSA-----VKRKKPCFVCGSLEHGVRQCSKA----------- 222
G + C+ C +EGHM+ +C +A R + CF CG H R C A
Sbjct: 173 GGRACFKCNQEGHMSRDCPNADSGGGGGRGRGCFKCGEEGHMSRDCPNADSSSGGGRSGG 232
Query: 223 QDCFICKKGGHRAKDCP--DKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCY 280
+ CF C + GH ++DCP D G + C KCG+ GH C + S DD + C+
Sbjct: 233 RGCFKCGQEGHMSRDCPNSDSSGGGGGGGRGCFKCGEEGHMSRDCPTASS-DDRPKRGCF 291
Query: 281 ICRCFGHLC--CVNISDAVPGEVSCFRCGQLGH 311
C GH+ C N + CF+CG+ GH
Sbjct: 292 NCGEDGHMSRDCPNPQQERRSK-GCFKCGEEGH 323
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 45/104 (43%), Gaps = 19/104 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP---CFVCGSLEHGVRQCSKAQD------CFICKKGGH 233
C+ CGEEGHM+ +C +A +P CF CG H R C Q CF C + GH
Sbjct: 264 CFKCGEEGHMSRDCPTASSDDRPKRGCFNCGEDGHMSRDCPNPQQERRSKGCFKCGEEGH 323
Query: 234 RAKDCP----------DKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
++DCP D G + C KC GH C N
Sbjct: 324 MSRDCPNPDAGGGRGGDTSGEGGDRPRGCFKCQQEGHMAKDCTN 367
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 23/85 (27%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAV--KRKKPCFVCGSLEHGVRQCS----------- 220
D P RG C+NCGE+GHM+ +C + +R K CF CG H R C
Sbjct: 284 DRPKRG---CFNCGEDGHMSRDCPNPQQERRSKGCFKCGEEGHMSRDCPNPDAGGGRGGD 340
Query: 221 -------KAQDCFICKKGGHRAKDC 238
+ + CF C++ GH AKDC
Sbjct: 341 TSGEGGDRPRGCFKCQQEGHMAKDC 365
>gi|189524881|ref|XP_001922882.1| PREDICTED: cellular nucleic acid-binding protein isoform 1 [Danio
rerio]
gi|189524883|ref|XP_001922883.1| PREDICTED: cellular nucleic acid-binding protein isoform 2 [Danio
rerio]
gi|326671493|ref|XP_003199446.1| PREDICTED: cellular nucleic acid-binding protein [Danio rerio]
gi|326671495|ref|XP_003199447.1| PREDICTED: cellular nucleic acid-binding protein [Danio rerio]
Length = 161
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 67/142 (47%), Gaps = 25/142 (17%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP---------CFVCGSLEHGVRQCSKAQD-CFICKKGG 232
C+ CG GH NC +A + + C+ CG H R C + +D C+ C +GG
Sbjct: 6 CFGCGRTGHWIKNCPNAGRGRGKGRGRGKDLFCYRCGEPGHVARDCERTEDACYNCGRGG 65
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVN 292
H ++DC + K + QVC CG +GH C D E +CY C FGH+
Sbjct: 66 HISRDCKEPKK---EREQVCYNCGKAGHMARDC------DHANEQKCYSCGGFGHI---- 112
Query: 293 ISDAVPGEVSCFRCGQLGHTGL 314
+V C+RCG++GH +
Sbjct: 113 --QKGCEKVKCYRCGEIGHVAV 132
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 58/136 (42%), Gaps = 36/136 (26%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAK 236
+R CYNCG GH++ +C+ K ++ Q C+ C K GH A+
Sbjct: 52 ERTEDACYNCGRGGHISRDCKEPKKERE------------------QVCYNCGKAGHMAR 93
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDA 296
DC N Q C CG GH C ++V+CY C GH V + +
Sbjct: 94 DCD------HANEQKCYSCGGFGHIQKGC---------EKVKCYRCGEIGH---VAVQCS 135
Query: 297 VPGEVSCFRCGQLGHT 312
EV+C+ CG+ GH
Sbjct: 136 KASEVNCYNCGKSGHV 151
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 18/83 (21%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKR----------------KKPCFVCGSLEHGVR 217
+P Q CYNCG+ GHMA +C A ++ K C+ CG + H
Sbjct: 73 EPKKEREQVCYNCGKAGHMARDCDHANEQKCYSCGGFGHIQKGCEKVKCYRCGEIGHVAV 132
Query: 218 QCSKAQD--CFICKKGGHRAKDC 238
QCSKA + C+ C K GH AK+C
Sbjct: 133 QCSKASEVNCYNCGKSGHVAKEC 155
>gi|154345732|ref|XP_001568803.1| putative universal minicircle sequence binding protein (UMSBP)
[Leishmania braziliensis MHOM/BR/75/M2904]
gi|134066145|emb|CAM43935.1| putative universal minicircle sequence binding protein (UMSBP)
[Leishmania braziliensis MHOM/BR/75/M2904]
Length = 276
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 69/163 (42%), Gaps = 33/163 (20%)
Query: 182 TCYNCGEEGHMAVNC----RSAVKRKKPCFVCGSLEHGVRQC--------SKAQDCFICK 229
TC+ CGE GHM+ C +S CF CG H R C +K +C+ C
Sbjct: 44 TCFRCGEAGHMSRECPNEAKSGAAGAMACFRCGEAGHMSRDCPNSAKPGAAKGFECYKCG 103
Query: 230 KGGHRAKDCPDKH----------------KSGFQNAQVCLKCGDSGHDMFSCRNSY-SLD 272
+ GH ++DCP + G+ + C KCGD+GH C NS
Sbjct: 104 QEGHLSRDCPSSQGGGRGGYGQKRGRNGAQGGYGGDRTCYKCGDAGHISRDCPNSQGGYS 163
Query: 273 DLKEVQCYICRCFGHLC--CVNISDAV--PGEVSCFRCGQLGH 311
+ CY C GH+ C N G+ +C++CG+ GH
Sbjct: 164 GAGDRTCYKCGESGHISRDCPNSQGGYSGAGDRTCYKCGKPGH 206
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 66/161 (40%), Gaps = 32/161 (19%)
Query: 183 CYNCGEEGHMAVNCRSA----VKRKKPCFVCGSLEHGVRQC--------SKAQDCFICKK 230
C NCG+EGH A C A +R CF CG H R+C + A CF C +
Sbjct: 18 CRNCGKEGHYARECPEADAKGDERSTTCFRCGEAGHMSRECPNEAKSGAAGAMACFRCGE 77
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLK--------------- 275
GH ++DCP+ K G C KCG GH C +S
Sbjct: 78 AGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGGRGGYGQKRGRNGAQGGYG 137
Query: 276 -EVQCYICRCFGHLC--CVNISDAV--PGEVSCFRCGQLGH 311
+ CY C GH+ C N G+ +C++CG+ GH
Sbjct: 138 GDRTCYKCGDAGHISRDCPNSQGGYSGAGDRTCYKCGESGH 178
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 21/111 (18%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAV-----KRKKPCFVCGSLEHGVRQCSKA----------- 222
G +TCY CGE GH++ +C ++ + C+ CG H R+C +A
Sbjct: 166 GDRTCYKCGESGHISRDCPNSQGGYSGAGDRTCYKCGKPGHMSRECPEAGGSYGGSRGGG 225
Query: 223 -QDCFICKKGGHRAKDCPDKHKSGFQNA----QVCLKCGDSGHDMFSCRNS 268
+ C+ C K GH +++CP+ S + + C KCGDSGH C +S
Sbjct: 226 DRTCYKCGKPGHMSRECPEAGGSYGGSRGGGDRTCYKCGDSGHISRDCPSS 276
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 71/202 (35%), Gaps = 70/202 (34%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD---------- 224
G C+ CGE GHM+ +C ++ K C+ CG H R C +Q
Sbjct: 68 GAMACFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGGRGGYGQKR 127
Query: 225 --------------CFICKKGGHRAKDCPDKHKSGFQNA--QVCLKCGDSGHDMFSCRNS 268
C+ C GH ++DCP+ + G+ A + C KCG+SGH C NS
Sbjct: 128 GRNGAQGGYGGDRTCYKCGDAGHISRDCPNS-QGGYSGAGDRTCYKCGESGHISRDCPNS 186
Query: 269 YS-LDDLKEVQCYICRCFGHLC--CVNISDAV----------------PGEVS------- 302
+ CY C GH+ C + PG +S
Sbjct: 187 QGGYSGAGDRTCYKCGKPGHMSRECPEAGGSYGGSRGGGDRTCYKCGKPGHMSRECPEAG 246
Query: 303 -------------CFRCGQLGH 311
C++CG GH
Sbjct: 247 GSYGGSRGGGDRTCYKCGDSGH 268
>gi|397570339|gb|EJK47249.1| hypothetical protein THAOC_34043 [Thalassiosira oceanica]
Length = 628
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 64/145 (44%), Gaps = 11/145 (7%)
Query: 177 DRGWQT-----CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKG 231
+R W+ C NCGE GHMA +C + KPC +C L H + C CF C
Sbjct: 408 NRYWEKDISIKCNNCGEVGHMAKDC-PKDGQLKPCGLCAGLGHEMWACPMKSICFNCGVP 466
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCC- 290
GH +++C + G ++C C S H F CR ++ C G L
Sbjct: 467 GHVSREC--NQRRGVPERKICTICFRSDHHRFQCRERPWNAPFQDAICMQTGRQGQLMKN 524
Query: 291 -VNISDAVPGEVSCFRCGQLGHTGL 314
+ + G VSCF CGQ GH G+
Sbjct: 525 EMRWFFGLRG-VSCFNCGQKGHLGI 548
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 183 CYNCGEEGHMAVNC--RSAVKRKKPCFVCGSLEHGVRQC------SKAQDCFICKKGGHR 234
C+NCG GH++ C R V +K C +C +H QC + QD IC + G +
Sbjct: 460 CFNCGVPGHVSRECNQRRGVPERKICTICFRSDHHRFQCRERPWNAPFQDA-ICMQTGRQ 518
Query: 235 AKDCPDKHKSGFQNAQV-CLKCGDSGHDMFSCR 266
+ ++ + F V C CG GH CR
Sbjct: 519 GQLMKNEMRWFFGLRGVSCFNCGQKGHLGIDCR 551
>gi|74835178|dbj|BAE44472.1| Vasa [Botryllus primigenus]
Length = 687
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 55/120 (45%), Gaps = 16/120 (13%)
Query: 183 CYNCGEEGHMAVNCRS--AVKRKKPCFVCGSLEHGVRQC------SKAQDCFICKKGGHR 234
CY CGEEGHM+ +C + R K CF CG H R C S+ + CF C + GH
Sbjct: 54 CYKCGEEGHMSRDCPNGGGSSRPKGCFKCGEEGHMSRDCPNGGGDSRPKGCFKCGEEGHM 113
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS------YSLDDLKEVQCYICRCFGHL 288
++DCP+ G + C KCG+ GH C N D K C+ C GH
Sbjct: 114 SRDCPN--GGGDSRPKGCFKCGEEGHMSRDCPNGGEGGSRSQGDRQKGSGCFKCGEEGHF 171
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 54/123 (43%), Gaps = 23/123 (18%)
Query: 206 CFVCGSLEHGVRQC------SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
C+ CG H R C S+ + CF C + GH ++DCP+ G + C KCG+ G
Sbjct: 54 CYKCGEEGHMSRDCPNGGGSSRPKGCFKCGEEGHMSRDCPN--GGGDSRPKGCFKCGEEG 111
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVPGEVS---------CFRCGQ 308
H C N D + C+ C GH+ C N + G S CF+CG+
Sbjct: 112 HMSRDCPNGGG--DSRPKGCFKCGEEGHMSRDCPNGGEG--GSRSQGDRQKGSGCFKCGE 167
Query: 309 LGH 311
GH
Sbjct: 168 EGH 170
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 16/73 (21%)
Query: 183 CYNCGEEGHMAVNCRSAV--KRKKPCFVCGSLEHGVRQCS--------------KAQDCF 226
C+ CGEEGHM+ +C + R K CF CG H R C K CF
Sbjct: 104 CFKCGEEGHMSRDCPNGGGDSRPKGCFKCGEEGHMSRDCPNGGEGGSRSQGDRQKGSGCF 163
Query: 227 ICKKGGHRAKDCP 239
C + GH +++CP
Sbjct: 164 KCGEEGHFSRECP 176
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 10/50 (20%)
Query: 183 CYNCGEEGHMAVNC--------RSAVKRKKP--CFVCGSLEHGVRQCSKA 222
C+ CGEEGHM+ +C RS R+K CF CG H R+C KA
Sbjct: 129 CFKCGEEGHMSRDCPNGGEGGSRSQGDRQKGSGCFKCGEEGHFSRECPKA 178
>gi|71416081|ref|XP_810084.1| universal minicircle sequence binding protein (UMSBP) [Trypanosoma
cruzi strain CL Brener]
gi|70874565|gb|EAN88233.1| universal minicircle sequence binding protein (UMSBP), putative
[Trypanosoma cruzi]
Length = 193
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 66/147 (44%), Gaps = 17/147 (11%)
Query: 179 GWQTCYNCGEEGHMAVNCRS---AVKRKKPCFVCGSLEHGVRQCSK-------AQDCFIC 228
G + CYNCG+ GH++ C + + C+ CG H R+C + C+ C
Sbjct: 42 GDRACYNCGQPGHLSRECPTRPPGAMGGRACYNCGQPGHLSRECPTRPPGAMGGRACYNC 101
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC--RNSYSLDDLKEVQCYICRCFG 286
+ GH +++CP + G + C CG GH C R + + CY C+ G
Sbjct: 102 GQPGHLSRECPTR-PPGAMGDRACYNCGRMGHLSHECPNRPAGGFRGVARGACYHCQQEG 160
Query: 287 HLC--CVNISDAVPGEVSCFRCGQLGH 311
HL C N GE +C+ CGQ GH
Sbjct: 161 HLARDCPNAPPG--GERACYNCGQTGH 185
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 16/100 (16%)
Query: 179 GWQTCYNCGEEGHMAVNCRS---AVKRKKPCFVCGSLEHGVRQCSKAQD----------C 225
G + CYNCG+ GH++ C + + C+ CG + H +C C
Sbjct: 94 GGRACYNCGQPGHLSRECPTRPPGAMGDRACYNCGRMGHLSHECPNRPAGGFRGVARGAC 153
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ C++ GH A+DCP+ G + C CG +GH +C
Sbjct: 154 YHCQQEGHLARDCPNAPPGG---ERACYNCGQTGHISRAC 190
>gi|156544377|ref|XP_001607405.1| PREDICTED: hypothetical protein LOC100123711 [Nasonia vitripennis]
Length = 531
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 54/106 (50%), Gaps = 15/106 (14%)
Query: 217 RQCSKA------QDCFICKKGGHRAKDCPD--KHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
R+C KA Q CF C+K GH DCP+ K ++G +C KCG + H F C+ +
Sbjct: 380 RKCEKALARVRRQVCFHCRKAGHNLSDCPELGKEEAG---TGICFKCGSTEHTHFECKVN 436
Query: 269 YSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
S DD + +C+ICR GH+ C N P SC CG + H
Sbjct: 437 KS-DDYRYAKCFICREQGHIAKQCPDNPKGLYPDGGSCKICGDVTH 481
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 10/90 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP---CFVCGSLEHGVRQC--SKAQD-----CFICKK 230
Q C++C + GH +C K + CF CGS EH +C +K+ D CFIC++
Sbjct: 392 QVCFHCRKAGHNLSDCPELGKEEAGTGICFKCGSTEHTHFECKVNKSDDYRYAKCFICRE 451
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
GH AK CPD K + + C CGD H
Sbjct: 452 QGHIAKQCPDNPKGLYPDGGSCKICGDVTH 481
>gi|401420040|ref|XP_003874509.1| putative poly-zinc finger protein 2 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490745|emb|CBZ26009.1| putative poly-zinc finger protein 2 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 135
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 59/136 (43%), Gaps = 18/136 (13%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CG GH + C SA PCF CG H ++C ++ CF C+K GHRA+D
Sbjct: 3 CYRCGGVGHQSRECTSAAD-SAPCFRCGKPGHVAKECVSTITAEEAPCFYCQKPGHRARD 61
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL--CCVNISD 295
CPD +C C GH C N CY+C GH+ C
Sbjct: 62 CPDAPPK--SETVMCYNCSQKGHIASECPN--------PAHCYLCNEDGHIGRSCPTAPK 111
Query: 296 AVPGEVSCFRCGQLGH 311
E SC +CG+ GH
Sbjct: 112 RSVAEKSCRKCGKKGH 127
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 15/102 (14%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQT----CYNCGEEGHMAVNCRSAVKRKKP 205
E V+T+ + G R D PD ++ CYNC ++GH+A C +
Sbjct: 37 ECVSTITAEEAPCFYCQKPGHRARDCPDAPPKSETVMCYNCSQKGHIASECPNPAH---- 92
Query: 206 CFVCGSLEHGVRQCSKA-------QDCFICKKGGHRAKDCPD 240
C++C H R C A + C C K GH KDCP+
Sbjct: 93 CYLCNEDGHIGRSCPTAPKRSVAEKSCRKCGKKGHLRKDCPE 134
>gi|291244816|ref|XP_002742290.1| PREDICTED: Vasa-like, partial [Saccoglossus kowalevskii]
Length = 679
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 64/141 (45%), Gaps = 12/141 (8%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-----AQDCFICKKGGHRA 235
++C+ CGEEGHM+ C + CF CG H R+C K + CF C + GH +
Sbjct: 101 RSCFKCGEEGHMSRECPKGGGGGRNCFKCGEEGHMSRECPKGGGGGGRGCFKCGEDGHMS 160
Query: 236 KDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNI 293
++CP G + C KCG+ GH C S L C+ C GH C N
Sbjct: 161 RECPQGGGGG-GRGRGCFKCGEEGHMSRDC-TSGGLGKSSGGGCFKCGESGHFSRECPNA 218
Query: 294 SD---AVPGEVSCFRCGQLGH 311
G +CFRCG+ GH
Sbjct: 219 ESGGGGGGGGGNCFRCGESGH 239
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 63/145 (43%), Gaps = 18/145 (12%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRK--------KPCFVCGSLEHGVRQCSK----AQDCFIC 228
+ C+ CGEEGHM+ C + CF CG H R+C K ++CF C
Sbjct: 70 RNCFKCGEEGHMSRECPKGGGGGGGGSGGGDRSCFKCGEEGHMSRECPKGGGGGRNCFKC 129
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
+ GH +++CP K G + C KCG+ GH C + C+ C GH+
Sbjct: 130 GEEGHMSRECP---KGGGGGGRGCFKCGEDGHMSRECPQG-GGGGGRGRGCFKCGEEGHM 185
Query: 289 C--CVNISDAVPGEVSCFRCGQLGH 311
C + CF+CG+ GH
Sbjct: 186 SRDCTSGGLGKSSGGGCFKCGESGH 210
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 183 CYNCGEEGHMAVNC---RSAVKRKKPCFVCGSLEHGVRQCSKAQD-------CFICKKGG 232
C+ CGE+GHM+ C R + CF CG H R C+ CF C + G
Sbjct: 150 CFKCGEDGHMSRECPQGGGGGGRGRGCFKCGEEGHMSRDCTSGGLGKSSGGGCFKCGESG 209
Query: 233 HRAKDCPDKHKSGFQNAQV--CLKCGDSGHDMFSCRN 267
H +++CP+ G C +CG+SGH C N
Sbjct: 210 HFSRECPNAESGGGGGGGGGNCFRCGESGHFAKDCTN 246
>gi|71418284|ref|XP_810806.1| universal minicircle sequence binding protein (UMSBP) [Trypanosoma
cruzi strain CL Brener]
gi|70875395|gb|EAN88955.1| universal minicircle sequence binding protein (UMSBP), putative
[Trypanosoma cruzi]
Length = 193
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 66/147 (44%), Gaps = 17/147 (11%)
Query: 179 GWQTCYNCGEEGHMAVNCRS---AVKRKKPCFVCGSLEHGVRQCSK-------AQDCFIC 228
G + CYNCG+ GH++ C + + C+ CG H R+C + C+ C
Sbjct: 42 GDRACYNCGQPGHLSRECPTRPPGAMGGRACYNCGQPGHLSRECPTRPPGAMGGRACYNC 101
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC--RNSYSLDDLKEVQCYICRCFG 286
+ GH +++CP + G + C CG GH C R + + CY C+ G
Sbjct: 102 GQPGHLSRECPTR-PPGVMGDRACYNCGRMGHLSRECPNRPAGGFRGVARGACYHCQQEG 160
Query: 287 HLC--CVNISDAVPGEVSCFRCGQLGH 311
HL C N GE +C+ CGQ GH
Sbjct: 161 HLARDCPNAPPG--GERACYNCGQTGH 185
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 16/100 (16%)
Query: 179 GWQTCYNCGEEGHMAVNCRS---AVKRKKPCFVCGSLEHGVRQCSKAQD----------C 225
G + CYNCG+ GH++ C + V + C+ CG + H R+C C
Sbjct: 94 GGRACYNCGQPGHLSRECPTRPPGVMGDRACYNCGRMGHLSRECPNRPAGGFRGVARGAC 153
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ C++ GH A+DCP+ G + C CG +GH +C
Sbjct: 154 YHCQQEGHLARDCPNAPPGG---ERACYNCGQTGHISRAC 190
>gi|392343296|ref|XP_003754844.1| PREDICTED: cellular nucleic acid-binding protein-like [Rattus
norvegicus]
gi|392355786|ref|XP_003752133.1| PREDICTED: cellular nucleic acid-binding protein-like [Rattus
norvegicus]
gi|149055591|gb|EDM07175.1| rCG38105 [Rattus norvegicus]
Length = 170
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 68/134 (50%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA-----QDCFICKKGGHRAKD 237
CY CGE GH A +C + C+ CG H + C++A Q C+IC + GH A+D
Sbjct: 47 CYRCGETGHYAKDCDLL---QDTCYNCGRRGHIAKDCTQAKREREQCCYICSRPGHLARD 103
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C D+ Q Q C CG+ GH D +++CY C GH+ VN S A
Sbjct: 104 C-DR-----QEEQKCYTCGEFGHIQ---------KDCTQIKCYRCGENGHM-AVNCSKA- 146
Query: 298 PGEVSCFRCGQLGH 311
EVSC+RCG+ GH
Sbjct: 147 -SEVSCYRCGESGH 159
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--CFICKKGGHRAKDC 238
Q CY CGE GH+ +C + +K C+ CG H CSKA + C+ C + GH A++C
Sbjct: 110 QKCYTCGEFGHIQKDC-TQIK----CYRCGENGHMAVNCSKASEVSCYRCGESGHLAREC 164
Query: 239 P 239
P
Sbjct: 165 P 165
Score = 40.8 bits (94), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
Q CY C GH+A +C ++K C+ CG H + C++ + C+ C + GH A +C
Sbjct: 89 QCCYICSRPGHLARDCDRQEEQK--CYTCGEFGHIQKDCTQIK-CYRCGENGHMAVNCSK 145
Query: 241 KHKSGFQNAQVCLKCGDSGH 260
+ C +CG+SGH
Sbjct: 146 ASEVS------CYRCGESGH 159
>gi|198428176|ref|XP_002131221.1| PREDICTED: similar to universal minicircle sequence binding protein
(UMSBP), putative isoform 1 [Ciona intestinalis]
Length = 299
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 71/158 (44%), Gaps = 38/158 (24%)
Query: 178 RGWQTCYNCGEEGHMAVNCRS----AVKR---KKP--------CFVCGSLEHGVRQCSKA 222
R CY CG GH A C + ++R ++P CF CG H R C A
Sbjct: 107 RDADVCYKCGTPGHFARECPNDAADGIQRNEDRRPMGRRNNDYCFRCGQPGHMARDCLSA 166
Query: 223 QD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC-----RNSYSLDDLKE 276
++ C+ C K GH A+DCP+ + C KCG +GH C RN + + +E
Sbjct: 167 ENACYNCYKEGHLARDCPEDN--------ACYKCGKAGHLARKCPEDADRNGDARLNRRE 218
Query: 277 V---QCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
QCY+C+ GH+ A E +C+RC GH
Sbjct: 219 AGTKQCYLCQNVGHI------QANCPEATCYRCHGEGH 250
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 58/137 (42%), Gaps = 24/137 (17%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCP-DK 241
C+ CG+ GHMA +C SA + C+ C H R C + C+ C K GH A+ CP D
Sbjct: 150 CFRCGQPGHMARDCLSA---ENACYNCYKEGHLARDCPEDNACYKCGKAGHLARKCPEDA 206
Query: 242 HKSG-------FQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNIS 294
++G + C C + GH +C E CY C GH+
Sbjct: 207 DRNGDARLNRREAGTKQCYLCQNVGHIQANC---------PEATCYRCHGEGHI----AR 253
Query: 295 DAVPGEVSCFRCGQLGH 311
D G C+ C + GH
Sbjct: 254 DCPNGNEECYNCRRPGH 270
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA-QDCFICKKGGHRAKD 237
G + CY C GH+ NC A C+ C H R C ++C+ C++ GH+A+D
Sbjct: 220 GTKQCYLCQNVGHIQANCPEAT-----CYRCHGEGHIARDCPNGNEECYNCRRPGHKARD 274
Query: 238 C 238
C
Sbjct: 275 C 275
>gi|301106623|ref|XP_002902394.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262098268|gb|EEY56320.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 443
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C++CGE GHMA C + K + PC+ C H +C C C++ GH+ +DC ++
Sbjct: 163 CFHCGEVGHMATVCMND-KLQLPCYYCALRGHQAWECPNLP-CGNCRQLGHQERDCDNRR 220
Query: 243 KSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVS 302
S C CG GH C N +++ +V C +C GHL CV I V
Sbjct: 221 LS----IDPCGVCGRPGHIDVDCDN---VEEPAQVTCMVCTEVGHLHCVPIPPPADRSVY 273
Query: 303 CFRCGQ 308
C CG+
Sbjct: 274 CPNCGE 279
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 39/106 (36%), Gaps = 20/106 (18%)
Query: 182 TCYNCGEEGHM-AVNCRSAVKRKKPCFVCGSLEHGVRQC------------------SKA 222
TC C E GH+ V R C CG H + +C
Sbjct: 249 TCMVCTEVGHLHCVPIPPPADRSVYCPNCGE-NHTLDRCDTYLEPTVTNFATRTASGRTV 307
Query: 223 QDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
Q CF+C + GH A +CP + + C KCG GH C +S
Sbjct: 308 QTCFVCNEAGHIAAECPVRSNGYTRGGGSCFKCGKPGHFAADCYDS 353
>gi|407917903|gb|EKG11203.1| Zinc finger CCHC-type protein [Macrophomina phaseolina MS6]
Length = 176
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 73/161 (45%), Gaps = 37/161 (22%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK--------AQDC 225
D P +G TCYNCGE+GH++ +C+ + +KPC+ CG + H R+C + Q+C
Sbjct: 23 DCPTKGNPTCYNCGEQGHLSRDCQQP-QAEKPCYRCGKVGHLSRECPEGGAPGMGAGQEC 81
Query: 226 FICKKGGHRAKDC-----------PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
+ C K GH A++C G Q C CG GH S D
Sbjct: 82 YKCGKVGHIARNCNSYGGGFGGGYGGGSGFGGPRGQTCYSCGGYGH--------MSRDCT 133
Query: 275 KEVQCYICRCFGHLCCVNISDAVPGEVS----CFRCGQLGH 311
+ +CY C GHL S P E S C++C Q GH
Sbjct: 134 QGQKCYNCGEVGHL-----SRDCPSETSNERVCYKCKQPGH 169
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 67/154 (43%), Gaps = 24/154 (15%)
Query: 172 YFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ---DCFIC 228
+ PP RG CYNCG+ H A +C K C+ CG H R C + Q C+ C
Sbjct: 3 FSAPPARG---CYNCGDTSHQARDC--PTKGNPTCYNCGEQGHLSRDCQQPQAEKPCYRC 57
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL-----------KEV 277
K GH +++CP+ G Q C KCG GH +C + +
Sbjct: 58 GKVGHLSRECPEGGAPGMGAGQECYKCGKVGHIARNCNSYGGGFGGGYGGGSGFGGPRGQ 117
Query: 278 QCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
CY C +GH+ D G+ C+ CG++GH
Sbjct: 118 TCYSCGGYGHM----SRDCTQGQ-KCYNCGEVGH 146
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 19/102 (18%)
Query: 181 QTCYNCGEEGHMAVNCRSAV---------------KRKKPCFVCGSLEHGVRQCSKAQDC 225
Q CY CG+ GH+A NC S R + C+ CG H R C++ Q C
Sbjct: 79 QECYKCGKVGHIARNCNSYGGGFGGGYGGGSGFGGPRGQTCYSCGGYGHMSRDCTQGQKC 138
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
+ C + GH ++DCP + N +VC KC GH +C N
Sbjct: 139 YNCGEVGHLSRDCPSE----TSNERVCYKCKQPGHVQAACPN 176
>gi|354488556|ref|XP_003506434.1| PREDICTED: cellular nucleic acid-binding protein-like [Cricetulus
griseus]
Length = 170
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 67/134 (50%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA-----QDCFICKKGGHRAKD 237
CY CGE GH A +C + C+ CG H + C++ Q C+IC + GH A+D
Sbjct: 47 CYRCGETGHYAKDCDLL---QDTCYNCGKRGHIAKDCTQTKREREQCCYICSRPGHLARD 103
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C D+ Q Q C CG+ GH D +++CY C GH+ VN S A
Sbjct: 104 C-DR-----QEEQKCYTCGEFGHIQ---------KDCTQIKCYRCGENGHM-AVNCSKAS 147
Query: 298 PGEVSCFRCGQLGH 311
EVSC+RCG+ GH
Sbjct: 148 --EVSCYRCGEPGH 159
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--CFICKKGGHRAKDC 238
Q CY CGE GH+ +C + +K C+ CG H CSKA + C+ C + GH A++C
Sbjct: 110 QKCYTCGEFGHIQKDC-TQIK----CYRCGENGHMAVNCSKASEVSCYRCGEPGHLAREC 164
Query: 239 P 239
P
Sbjct: 165 P 165
>gi|258676573|gb|ACV87294.1| VASA DEAD-box protein [Phallusia mammillata]
Length = 851
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 71/161 (44%), Gaps = 30/161 (18%)
Query: 181 QTCYNCGEEGHMAVNCRSA-----------VKRKKPCFVCGSLEHGVRQCS--------- 220
+TC+ CGEEGHM+ C SA R K CF CG H R+C
Sbjct: 162 KTCFKCGEEGHMSRECPSADSSSGGFGGSGGGRPKTCFKCGEEGHMSRECPSADSSSGGF 221
Query: 221 ---KAQDCFICKKGGHRAKDCP--DKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLK 275
K++ CF C + GH ++DCP G ++ C KCG+ GH C + S
Sbjct: 222 GGGKSRGCFKCGEEGHMSRDCPSGGSTGFGGGKSKSCFKCGEEGHMSRDCPSGGSQGGFG 281
Query: 276 EVQ---CYICRCFGHLC--CVNISDAVPGEVSCFRCGQLGH 311
+ C+ C GH+ C + D+ CF+CG+ GH
Sbjct: 282 GGRPKGCFKCGEEGHMSRECPSGGDSSNRGKGCFKCGEEGH 322
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 14/73 (19%)
Query: 181 QTCYNCGEEGHMAVNC-------RSAVKRKKPCFVCGSLEHGVRQCSKAQD-------CF 226
++C+ CGEEGHM+ +C R K CF CG H R+C D CF
Sbjct: 256 KSCFKCGEEGHMSRDCPSGGSQGGFGGGRPKGCFKCGEEGHMSRECPSGGDSSNRGKGCF 315
Query: 227 ICKKGGHRAKDCP 239
C + GH A+DCP
Sbjct: 316 KCGEEGHMARDCP 328
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 64/168 (38%), Gaps = 34/168 (20%)
Query: 178 RGWQTCYNCGEEG-----HMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA---------- 222
+G+ + +N G G A S+ + K CF CG H R+C K
Sbjct: 99 KGFGSGFNSGSFGDKPDRSFASGESSSNNKGKGCFKCGEEGHKSRECPKGGQQGFGASGG 158
Query: 223 ---QDCFICKKGGHRAKDCPDK-------HKSGFQNAQVCLKCGDSGHDMFSC----RNS 268
+ CF C + GH +++CP SG + C KCG+ GH C +S
Sbjct: 159 GRPKTCFKCGEEGHMSRECPSADSSSGGFGGSGGGRPKTCFKCGEEGHMSRECPSADSSS 218
Query: 269 YSLDDLKEVQCYICRCFGHLC-----CVNISDAVPGEVSCFRCGQLGH 311
K C+ C GH+ + SCF+CG+ GH
Sbjct: 219 GGFGGGKSRGCFKCGEEGHMSRDCPSGGSTGFGGGKSKSCFKCGEEGH 266
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 183 CYNCGEEGHMAVNCRS---AVKRKKPCFVCGSLEHGVRQCSKAQD 224
C+ CGEEGHM+ C S + R K CF CG H R C A D
Sbjct: 288 CFKCGEEGHMSRECPSGGDSSNRGKGCFKCGEEGHMARDCPSAGD 332
>gi|400594711|gb|EJP62544.1| cellular nucleic acid-binding protein [Beauveria bassiana ARSEF
2860]
Length = 179
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 65/151 (43%), Gaps = 21/151 (13%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA------QDCFI 227
D P +G CYNCG EGH++ C +K K C+ CG H R+C A +C+
Sbjct: 29 DCPSKGPAKCYNCGNEGHLSRECSEPMKENKSCYKCGQPGHLSRECPTAGGNGQSTECYK 88
Query: 228 CKKGGHRAKDCPDKHKSGFQNA-------QVCLKCGDSGHDMFSCRNSYSLDDLKEVQCY 280
C + GH A+ C G A + C CG GH C N ++CY
Sbjct: 89 CGEMGHIARHCTKSSYGGSYGASYNGGAGKTCYSCGGYGHMSRECVNG--------MRCY 140
Query: 281 ICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
C GH ++ GE C++C Q GH
Sbjct: 141 NCGESGHYSRDCPKESTGGEKICYKCQQSGH 171
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 73/149 (48%), Gaps = 26/149 (17%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA----QDCFICKKG 231
P RG CY+CG GH A +C S K C+ CG+ H R+CS+ + C+ C +
Sbjct: 12 PSRG--ACYSCGNSGHQARDCPSKGPAK--CYNCGNEGHLSRECSEPMKENKSCYKCGQP 67
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC-RNSY------SLDDLKEVQCYICRC 284
GH +++CP +G + C KCG+ GH C ++SY S + CY C
Sbjct: 68 GHLSRECPTAGGNG--QSTECYKCGEMGHIARHCTKSSYGGSYGASYNGGAGKTCYSCGG 125
Query: 285 FGHLC--CVNISDAVPGEVSCFRCGQLGH 311
+GH+ CVN + C+ CG+ GH
Sbjct: 126 YGHMSRECVN-------GMRCYNCGESGH 147
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 183 CYNCGEEGHMAVNCRSAV-----------KRKKPCFVCGSLEHGVRQCSKAQDCFICKKG 231
CY CGE GH+A +C + K C+ CG H R+C C+ C +
Sbjct: 86 CYKCGEMGHIARHCTKSSYGGSYGASYNGGAGKTCYSCGGYGHMSRECVNGMRCYNCGES 145
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
GH ++DCP + G ++C KC SGH +C N
Sbjct: 146 GHYSRDCPKESTGG---EKICYKCQQSGHVQAACPN 178
>gi|98986202|dbj|BAE94497.1| Vasa [Polyandrocarpa misakiensis]
Length = 705
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 10/88 (11%)
Query: 183 CYNCGEEGHMAVNCRS--AVKRKKPCFVCGSLEHGVRQCSK-----AQDCFICKKGGHRA 235
C+ CGEEGHM+ +C S + K CF CG H R+C ++ CF C + GH +
Sbjct: 97 CFKCGEEGHMSRDCPSNTSTGSSKACFKCGEEGHMSRECPNNNNNNSKACFKCGEEGHMS 156
Query: 236 KDCPDKHKS--GF-QNAQVCLKCGDSGH 260
++CP+ + S GF +++ C KCG+ GH
Sbjct: 157 RECPNNNSSKDGFGTSSRACFKCGEEGH 184
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 33/140 (23%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK---RKKPCFVCGSLEHGVRQC------SKAQDCFICKKG 231
++C+ CG+EGHM+ +C S + K CF CG H R C ++ CF C +
Sbjct: 69 RSCFKCGQEGHMSRDCTSGASGDTQAKKCFKCGEEGHMSRDCPSNTSTGSSKACFKCGEE 128
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCV 291
GH +++CP+ + + N++ C KCG+ GH C N+ S D FG
Sbjct: 129 GHMSRECPNNNNN---NSKACFKCGEEGHMSRECPNNNSSKD----------GFGT---- 171
Query: 292 NISDAVPGEVSCFRCGQLGH 311
+CF+CG+ GH
Sbjct: 172 -------SSRACFKCGEEGH 184
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 181 QTCYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQC-----------SKAQDCFIC 228
+ C+ CGEEGHM+ C + K CF CG H R+C + ++ CF C
Sbjct: 120 KACFKCGEEGHMSRECPNNNNNNSKACFKCGEEGHMSRECPNNNSSKDGFGTSSRACFKC 179
Query: 229 KKGGHRAKDCP 239
+ GH +++CP
Sbjct: 180 GEEGHMSRECP 190
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRK-------KPCFVCGSLEHGVRQCSKA 222
+ C+ CGEEGHM+ C + K + CF CG H R+C KA
Sbjct: 144 KACFKCGEEGHMSRECPNNNSSKDGFGTSSRACFKCGEEGHMSRECPKA 192
>gi|9955402|dbj|BAB12217.1| vasa homolog [Ciona savignyi]
Length = 770
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 64/144 (44%), Gaps = 18/144 (12%)
Query: 183 CYNCGEEGHMAVNC--RSAVKRKKPCFVCGSLEHGVRQCSK--------AQDCFICKKGG 232
C+ CGEEGHM+ C R K CF CG H R+C K + CF C + G
Sbjct: 108 CFKCGEEGHMSRECPQGGGGSRGKGCFKCGEEGHMSRECPKGGGGGGGGGRGCFKCGEEG 167
Query: 233 HRAKDCPDKHKSGFQN---AQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC 289
H +++CP SGF+ ++ C KCG+ GH C + C+ C GH+
Sbjct: 168 HMSRECPKGGDSGFEGRSRSKGCFKCGEEGHMSRECPQGGG--GGRGSGCFKCGEEGHMS 225
Query: 290 --CVNISDAVPGEVSCFRCGQLGH 311
C CF+CG+ GH
Sbjct: 226 RECPQGGGGG-RGSGCFKCGEEGH 248
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 50/121 (41%), Gaps = 12/121 (9%)
Query: 202 RKKPCFVCGSLEHGVRQCSKAQD------CFICKKGGHRAKDCPDKHKSGFQNAQVCLKC 255
R K CF CG H R+C + CF C + GH +++CP G + C KC
Sbjct: 104 RSKGCFKCGEEGHMSRECPQGGGGSRGKGCFKCGEEGHMSRECPKGGGGGGGGGRGCFKC 163
Query: 256 GDSGHDMFSCR---NSYSLDDLKEVQCYICRCFGHLC--CVNISDAVPGEVSCFRCGQLG 310
G+ GH C +S + C+ C GH+ C CF+CG+ G
Sbjct: 164 GEEGHMSRECPKGGDSGFEGRSRSKGCFKCGEEGHMSRECPQGGGGG-RGSGCFKCGEEG 222
Query: 311 H 311
H
Sbjct: 223 H 223
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 217 RQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKE 276
R S+++ CF C + GH +++CP + C KCG+ GH C
Sbjct: 100 RGSSRSKGCFKCGEEGHMSRECPQGGGG--SRGKGCFKCGEEGHMSRECPKGGGGGGGGG 157
Query: 277 VQCYICRCFGHL---CCVNISDAVPGEV---SCFRCGQLGH 311
C+ C GH+ C G CF+CG+ GH
Sbjct: 158 RGCFKCGEEGHMSRECPKGGDSGFEGRSRSKGCFKCGEEGH 198
>gi|121702271|ref|XP_001269400.1| zinc knuckle domain protein [Aspergillus clavatus NRRL 1]
gi|119397543|gb|EAW07974.1| zinc knuckle domain protein [Aspergillus clavatus NRRL 1]
Length = 177
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 169 GPRYFDPPDRGWQTCYNCGEEGHMAVNCR-----------SAVKRKKPCFVCGSLEHGVR 217
G Y P G Q CY CG+ GH+A NC R++ C+ CG H R
Sbjct: 72 GDNYGGPSTGGGQECYKCGQVGHIARNCSQGGNYGGGYGGGFGGRQQTCYSCGGFGHMAR 131
Query: 218 QCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
C++ Q C+ C + GH ++DCP + K +VC KC GH +C N
Sbjct: 132 DCTQGQKCYNCGEVGHVSRDCPTEAK----GERVCYKCKQPGHVQAACPN 177
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 69/163 (42%), Gaps = 39/163 (23%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA----------- 222
D P +G TCYNCG +GH++ C A K K C+ CG H R+C ++
Sbjct: 22 DCPKKGTPTCYNCGGQGHVSRECTVAPKEKS-CYRCGVAGHISRECPQSGAGDNYGGPST 80
Query: 223 ---QDCFICKKGGHRAKDCPDKHKSGFQNA-------QVCLKCGDSGHDMFSCRNSYSLD 272
Q+C+ C + GH A++C G Q C CG GH + D
Sbjct: 81 GGGQECYKCGQVGHIARNCSQGGNYGGGYGGGFGGRQQTCYSCGGFGH--------MARD 132
Query: 273 DLKEVQCYICRCFGHLCCVNISDAVP----GEVSCFRCGQLGH 311
+ +CY C GH +S P GE C++C Q GH
Sbjct: 133 CTQGQKCYNCGEVGH-----VSRDCPTEAKGERVCYKCKQPGH 170
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 25/150 (16%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCS---KAQDCFICKKGGHR 234
G + C+NCG+ H A +C K+ P C+ CG H R+C+ K + C+ C GH
Sbjct: 6 GGRGCFNCGDASHQARDC---PKKGTPTCYNCGGQGHVSRECTVAPKEKSCYRCGVAGHI 62
Query: 235 AKDCPDKHKS------GFQNAQVCLKCGDSGHDMFSCRN-------SYSLDDLKEVQCYI 281
+++CP Q C KCG GH +C ++ CY
Sbjct: 63 SRECPQSGAGDNYGGPSTGGGQECYKCGQVGHIARNCSQGGNYGGGYGGGFGGRQQTCYS 122
Query: 282 CRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
C FGH+ D G+ C+ CG++GH
Sbjct: 123 CGGFGHM----ARDCTQGQ-KCYNCGEVGH 147
>gi|294948106|ref|XP_002785619.1| cellular nucleic acid binding protein, putative [Perkinsus marinus
ATCC 50983]
gi|239899598|gb|EER17415.1| cellular nucleic acid binding protein, putative [Perkinsus marinus
ATCC 50983]
Length = 141
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA--QDCFICKKGG 232
P R CYNCG+ H+A +C + ++PCF CG + H R C++ + CF C + G
Sbjct: 39 PTGRRPMNCYNCGKPDHLARDCPNEQTNQRPCFKCGKVGHFARDCTEPDTRACFRCGQTG 98
Query: 233 HRAKDCP--------DKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
H A+DCP ++ G + C KCG GH C N
Sbjct: 99 HLARDCPNEDTRPESERAPRGRSEGRNCFKCGKPGHLARDCPN 141
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 16/96 (16%)
Query: 182 TCYNCGEEGHMAVNC------RSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKG 231
TC+ C E GH A +C R +R C+ CG +H R C Q CF C K
Sbjct: 17 TCFICNEPGHFARDCPQASSSRPTGRRPMNCYNCGKPDHLARDCPNEQTNQRPCFKCGKV 76
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
GH A+DC + + + C +CG +GH C N
Sbjct: 77 GHFARDCTEP------DTRACFRCGQTGHLARDCPN 106
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 225 CFICKKGGHRAKDCPDKHKS--GFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYIC 282
CFIC + GH A+DCP S + C CG H C N + + C+ C
Sbjct: 18 CFICNEPGHFARDCPQASSSRPTGRRPMNCYNCGKPDHLARDCPN----EQTNQRPCFKC 73
Query: 283 RCFGHLCCVNISDAV-PGEVSCFRCGQLGH 311
GH D P +CFRCGQ GH
Sbjct: 74 GKVGHF----ARDCTEPDTRACFRCGQTGH 99
>gi|294874952|ref|XP_002767169.1| cellular nucleic acid binding protein, putative [Perkinsus marinus
ATCC 50983]
gi|239868618|gb|EEQ99886.1| cellular nucleic acid binding protein, putative [Perkinsus marinus
ATCC 50983]
Length = 141
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA--QDCFICKKGG 232
P R CYNCG+ H+A +C + ++PCF CG + H R C++ + CF C + G
Sbjct: 39 PTGRRPMNCYNCGKPDHLARDCPNEQTNQRPCFKCGKVGHFARDCTEPDTRACFRCGETG 98
Query: 233 HRAKDCP--------DKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
H A+DCP ++ G + C KCG GH C N
Sbjct: 99 HLARDCPNEDTRPESERAPRGRSEGRNCFKCGKPGHLARDCPN 141
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 16/96 (16%)
Query: 182 TCYNCGEEGHMAVNC------RSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKG 231
TC+ C E GH A +C R +R C+ CG +H R C Q CF C K
Sbjct: 17 TCFICNEPGHFARDCPQASSSRPTGRRPMNCYNCGKPDHLARDCPNEQTNQRPCFKCGKV 76
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
GH A+DC + + + C +CG++GH C N
Sbjct: 77 GHFARDCTEP------DTRACFRCGETGHLARDCPN 106
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 225 CFICKKGGHRAKDCPDKHKS--GFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYIC 282
CFIC + GH A+DCP S + C CG H C N + + C+ C
Sbjct: 18 CFICNEPGHFARDCPQASSSRPTGRRPMNCYNCGKPDHLARDCPN----EQTNQRPCFKC 73
Query: 283 RCFGHLCCVNISDAV-PGEVSCFRCGQLGH 311
GH D P +CFRCG+ GH
Sbjct: 74 GKVGHF----ARDCTEPDTRACFRCGETGH 99
>gi|340507460|gb|EGR33421.1| universal minicircle sequence binding protein, putative
[Ichthyophthirius multifiliis]
Length = 724
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 76/179 (42%), Gaps = 50/179 (27%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKK---PCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHR 234
C+ CGEEGHM+ +C + R+K CF CG + H ++C + C+ C++ GH
Sbjct: 305 CFKCGEEGHMSRDCSNGNSREKKNNSCFNCGEITHMSKECPNPKKPRSIQCYKCQQEGHM 364
Query: 235 AKDCPDK-----------------HKSG-FQNAQVCLKCGDSGHDMFSCRNSYSLDDLKE 276
AKDCP+ HKS +C+KC + GH C+N D + +
Sbjct: 365 AKDCPNAQQYQARVMKCFLCKKEGHKSNDCTEPPLCMKCKEQGHQSKDCQNP---DHMNK 421
Query: 277 VQCYICRCFGHL---CCVNISDAV------------PG------EVSCFRCGQLGHTGL 314
C+ C GH C N ++ PG + CF+C + GH +
Sbjct: 422 RVCFNCGDEGHPTKGCPQNQQNSFRNNNDTNSTYQKPGGFQQREKPKCFKCQKEGHRAI 480
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 68/155 (43%), Gaps = 37/155 (23%)
Query: 183 CYNCGEEGHMAVNCRSAVK---RKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDC- 238
CY C +EGHMA +C +A + R CF+C H C++ C CK+ GH++KDC
Sbjct: 355 CYKCQQEGHMAKDCPNAQQYQARVMKCFLCKKEGHKSNDCTEPPLCMKCKEQGHQSKDCQ 414
Query: 239 -PDKHKSGFQNAQVCLKCGDSGHDMFSC----RNSY--------------SLDDLKEVQC 279
PD N +VC CGD GH C +NS+ ++ +C
Sbjct: 415 NPD-----HMNKRVCFNCGDEGHPTKGCPQNQQNSFRNNNDTNSTYQKPGGFQQREKPKC 469
Query: 280 YICRCFGHLC--CVNISDAVPGEVSCFRCGQLGHT 312
+ C+ GH C + CF+C Q H+
Sbjct: 470 FKCQKEGHRAIDCTEL-------PYCFKCLQNIHS 497
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 16/118 (13%)
Query: 201 KRKKPCFVCGSLEHGVRQCS-------KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCL 253
+RKK CF CG H R CS K CF C + H +K+CP+ K + C
Sbjct: 300 ERKKGCFKCGEEGHMSRDCSNGNSREKKNNSCFNCGEITHMSKECPNPKKP---RSIQCY 356
Query: 254 KCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
KC GH C N+ + ++C++C+ GH S+ C +C + GH
Sbjct: 357 KCQQEGHMAKDCPNAQQY-QARVMKCFLCKKEGHK-----SNDCTEPPLCMKCKEQGH 408
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 29/102 (28%)
Query: 183 CYNCGEEGHMAVNCRSAVK---------------------RKKP-CFVCGSLEHGVRQCS 220
C+NCG+EGH C + R+KP CF C H C+
Sbjct: 424 CFNCGDEGHPTKGCPQNQQNSFRNNNDTNSTYQKPGGFQQREKPKCFKCQKEGHRAIDCT 483
Query: 221 KAQDCFICKKGGHRAKDC--PDKHKSGFQNAQVCLKCGDSGH 260
+ CF C + H +K+C P+ K +VC CGD H
Sbjct: 484 ELPYCFKCLQNIHSSKECDHPENSK-----KRVCFNCGDEKH 520
>gi|331238075|ref|XP_003331693.1| hypothetical protein PGTG_12858 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309310683|gb|EFP87274.1| hypothetical protein PGTG_12858 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 169
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 62/137 (45%), Gaps = 18/137 (13%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-DCFICKKGGHR 234
P G +CYNCG EGH++ +C + K C+ CG H R CS+ + +CF C + GH
Sbjct: 19 PKSGTPSCYNCGGEGHISKDCSNPTAPKS-CYTCGDSGHISRDCSQQKTNCFKCGEEGHY 77
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNIS 294
++DCP GD G+ +S CY C GHL S
Sbjct: 78 SRDCPQAGGG-----------GDQGYQSYSGGRGRGGGGGGSRNCYTCGGVGHL-----S 121
Query: 295 DAVPGEVSCFRCGQLGH 311
G+ CF CG++GH
Sbjct: 122 RDCVGDQKCFNCGEVGH 138
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 26/98 (26%)
Query: 183 CYNCGEEGHMAVNCRSA--------------------VKRKKPCFVCGSLEHGVRQCSKA 222
C+ CGEEGH + +C A + C+ CG + H R C
Sbjct: 68 CFKCGEEGHYSRDCPQAGGGGDQGYQSYSGGRGRGGGGGGSRNCYTCGGVGHLSRDCVGD 127
Query: 223 QDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
Q CF C + GH ++DC A+ C CG SGH
Sbjct: 128 QKCFNCGEVGHVSRDCSRPQ------AKNCYACGQSGH 159
>gi|449446157|ref|XP_004140838.1| PREDICTED: uncharacterized protein LOC101212555 [Cucumis sativus]
Length = 396
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 10/117 (8%)
Query: 206 CFVCGSLEHGVRQCS------KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
CF+C + +H + C K + C +C++ GH K+CPDK++ G + ++C CG++G
Sbjct: 78 CFICKANDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKNE-GTVDKKLCYNCGETG 136
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGHTG 313
H + +C K C+IC GHL C N P C CG++ H
Sbjct: 137 HSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYPKGGCCKTCGEVTHLA 193
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
+ CYNCGE GH NC L+ G +K CFIC + GH +K+CP
Sbjct: 127 KLCYNCGETGHSLANCPQP------------LQDGG---TKFASCFICNESGHLSKNCPK 171
Query: 241 KHKSGFQNAQVCLKCGDSGH 260
+ C CG+ H
Sbjct: 172 NTHGIYPKGGCCKTCGEVTH 191
>gi|449485612|ref|XP_004157224.1| PREDICTED: uncharacterized LOC101212555 [Cucumis sativus]
Length = 396
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
Query: 206 CFVCGSLEHGVRQCS------KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
CF+C + +H + C K + C +C++ GH K+CPDK++ G + ++C CG++G
Sbjct: 78 CFICKANDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKNE-GTVDKKLCYNCGETG 136
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
H + +C K C+IC GHL C N P C CG++ H
Sbjct: 137 HSLANCSQPLQDGGTKFASCFICNEGGHLSKNCPKNTHGIYPKGGCCKTCGEVTH 191
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 15/80 (18%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
+ CYNCGE GH NC L+ G +K CFIC +GGH +K+CP
Sbjct: 127 KLCYNCGETGHSLANCSQP------------LQDGG---TKFASCFICNEGGHLSKNCPK 171
Query: 241 KHKSGFQNAQVCLKCGDSGH 260
+ C CG+ H
Sbjct: 172 NTHGIYPKGGCCKTCGEVTH 191
>gi|452819791|gb|EME26843.1| cellular nucleic acid-binding protein [Galdieria sulphuraria]
Length = 301
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 97/231 (41%), Gaps = 37/231 (16%)
Query: 93 PSGTTDDVIIEDVKSSDKKRI---RVRKKKKKEADKIEIED------QSVIVRKEEQKVE 143
P G+ D+ + V S+ + R R +K+ ++ K E +V + ++E K E
Sbjct: 13 PPGSPDEELSHLVTHSETTKADSPRKRSQKRHKSSKALPESGPNSGPTTVTLEEKESKDE 72
Query: 144 TADNGDEGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRK 203
+ E ++ RYF + C NCG GH +V C V +
Sbjct: 73 ASTFFSEEQASLHAESQA---------RYFSESN---VVCSNCGLAGHFSVFCPEEVVGR 120
Query: 204 KPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMF 263
+ CF+CG H R CS+ + C C + GH+ K+C L D +
Sbjct: 121 R-CFLCGGEGHLARNCSE-ELCHNCLRPGHKRKNC-------------TLPRRDWRREEK 165
Query: 264 SCRNSYS-LDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTG 313
Y L ++K+++CYIC GHL C +SC+ CGQ GH+G
Sbjct: 166 HAYPKYEDLKNVKKLKCYICGKTGHLDCSFEKMKFCKSISCYNCGQSGHSG 216
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 87/243 (35%), Gaps = 57/243 (23%)
Query: 49 MLMRAAKLDQDDSDSDVVLNDNTNTNTSDNSNNKNGGVEAVVP--GPSGTTDDVIIEDVK 106
+L+ D++ S V ++ T ++ + K +P GP+ V +E+ +
Sbjct: 10 LLLPPGSPDEELSHL-VTHSETTKADSPRKRSQKRHKSSKALPESGPNSGPTTVTLEEKE 68
Query: 107 SSDKKRIRVRKKKKKEADKIEIEDQSVIVRKEEQKVETADNGDEGVTTVEISDNIVLRKL 166
S D+ +E + E Q+ E V ++ G G +V + +V R+
Sbjct: 69 SKDEASTFF----SEEQASLHAESQARYF--SESNVVCSNCGLAGHFSVFCPEEVVGRR- 121
Query: 167 LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS------ 220
C+ CG EGH+A NC + C C H + C+
Sbjct: 122 ----------------CFLCGGEGHLARNCSEEL-----CHNCLRPGHKRKNCTLPRRDW 160
Query: 221 -----------------KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMF 263
K C+IC K GH DC K F + C CG SGH
Sbjct: 161 RREEKHAYPKYEDLKNVKKLKCYICGKTGH--LDC-SFEKMKFCKSISCYNCGQSGHSGG 217
Query: 264 SCR 266
SCR
Sbjct: 218 SCR 220
>gi|335306205|ref|XP_001926395.3| PREDICTED: cellular nucleic acid-binding protein-like [Sus scrofa]
Length = 171
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 66/134 (49%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA-----QDCFICKKGGHRAKD 237
CY CGE GH A NC ++ C+ CG H + C + Q C+ C + GH A+D
Sbjct: 48 CYRCGEPGHHAKNCDL---QEDICYNCGKSGHIAKDCMEPKRERDQCCYTCGRPGHLARD 104
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C D+ Q Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 105 C-DR-----QEEQKCYSCGERGHIQ---------KDCTQVRCYRCGETGH---VAINCSK 146
Query: 298 PGEVSCFRCGQLGH 311
P EV+C+RCG+ GH
Sbjct: 147 PSEVNCYRCGESGH 160
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 61/152 (40%), Gaps = 35/152 (23%)
Query: 183 CYNCGEEGHMAVNCR-------------------SAVKRKKPCFVCGSLEHGVRQCSKAQ 223
C+ CG GH A C S+ C+ CG H + C +
Sbjct: 6 CFKCGRSGHWARGCPKGGGARGRGSRGRGRGPHCSSTTLPIICYRCGEPGHHAKNCDLQE 65
Query: 224 D-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYIC 282
D C+ C K GH AKDC + + + Q C CG GH C D +E +CY C
Sbjct: 66 DICYNCGKSGHIAKDCMEPKR---ERDQCCYTCGRPGHLARDC------DRQEEQKCYSC 116
Query: 283 RCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
GH+ D +V C+RCG+ GH +
Sbjct: 117 GERGHI----QKDCT--QVRCYRCGETGHVAI 142
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
Q CY CG GH+A +C ++K C+ CG H + C++ + C+ C + GH A +C
Sbjct: 90 QCCYTCGRPGHLARDCDRQEEQK--CYSCGERGHIQKDCTQVR-CYRCGETGHVAINCSK 146
Query: 241 KHKSGFQNAQVCLKCGDSGH 260
+ C +CG+SGH
Sbjct: 147 PSEVN------CYRCGESGH 160
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--CFICKKGGHRAKDC 238
Q CY+CGE GH+ +C + V+ C+ CG H CSK + C+ C + GH A++C
Sbjct: 111 QKCYSCGERGHIQKDC-TQVR----CYRCGETGHVAINCSKPSEVNCYRCGESGHLAREC 165
Query: 239 P 239
P
Sbjct: 166 P 166
>gi|71756201|ref|XP_829015.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834401|gb|EAN79903.1| nucleic acid binding protein, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261334955|emb|CBH17949.1| nucleic acid binding protein, putative [Trypanosoma brucei
gambiense DAL972]
Length = 516
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 24/131 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C+ C ++GH+ C + C+ CG+ H ++C C+ C GHR+ DCP +
Sbjct: 86 CFQCHQKGHLLPMCP-----QTRCYNCGNYGHSSQRCLSRPLCYHCSSTGHRSTDCPLRE 140
Query: 243 KSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVS 302
K +VC +C GHDM C SL L C+ C GH+ S P ++S
Sbjct: 141 K-----GRVCYRCKKPGHDMAGC----SLSAL----CFTCNGEGHM-----SAQCP-QIS 181
Query: 303 CFRCGQLGHTG 313
C RC GH
Sbjct: 182 CNRCNAKGHVA 192
>gi|55925630|ref|NP_083434.1| zinc finger CCHC domain-containing protein 13 [Mus musculus]
gi|12854262|dbj|BAB29977.1| unnamed protein product [Mus musculus]
gi|21425582|emb|CAD33940.1| cellular nucleic acid binding-like protein [Mus musculus]
gi|148682147|gb|EDL14094.1| cellular nucleic acid binding protein 2 [Mus musculus]
gi|148877851|gb|AAI45773.1| Zinc finger, CCHC domain containing 13 [Mus musculus]
gi|148878274|gb|AAI45775.1| Zinc finger, CCHC domain containing 13 [Mus musculus]
Length = 170
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 65/134 (48%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA-----QDCFICKKGGHRAKD 237
CY CGE GH A +C + C+ CG H + C++A Q C+IC + GH A+D
Sbjct: 47 CYRCGETGHYAKDCDLL---QDTCYNCGRRGHIAKDCTQAKREREQCCYICSQPGHLARD 103
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C Q Q C CG+ GH D +++CY C GH+ VN S
Sbjct: 104 C------NRQEEQKCYTCGEFGHIQ---------KDCTQIKCYRCGENGHM-AVNCSKT- 146
Query: 298 PGEVSCFRCGQLGH 311
EVSC+RCG+ GH
Sbjct: 147 -SEVSCYRCGESGH 159
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 11/81 (13%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
Q CY C + GH+A +C ++K C+ CG H + C++ + C+ C + GH A +C
Sbjct: 89 QCCYICSQPGHLARDCNRQEEQK--CYTCGEFGHIQKDCTQIK-CYRCGENGHMAVNCS- 144
Query: 241 KHKSGFQNAQV-CLKCGDSGH 260
+ ++V C +CG+SGH
Sbjct: 145 ------KTSEVSCYRCGESGH 159
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--CFICKKGGHRAKDC 238
Q CY CGE GH+ +C + +K C+ CG H CSK + C+ C + GH A++C
Sbjct: 110 QKCYTCGEFGHIQKDC-TQIK----CYRCGENGHMAVNCSKTSEVSCYRCGESGHLAREC 164
Query: 239 P 239
P
Sbjct: 165 P 165
>gi|347921162|ref|NP_001231665.1| zinc finger protein 9 [Danio rerio]
gi|347921635|ref|NP_956043.2| zinc finger protein 9 [Danio rerio]
Length = 163
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 25/142 (17%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP---------CFVCGSLEHGVRQCSKAQD-CFICKKGG 232
C+ CG GH NC +A + + C+ CG H R C + +D C+ C + G
Sbjct: 8 CFGCGRSGHWIKNCPNAGRGRGRGRGRGKDLFCYRCGEQGHIARDCEQTEDACYNCHRSG 67
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVN 292
H ++DC + K + Q C CG +GH C D E +CY C FGH+
Sbjct: 68 HISRDCKEPKK---EREQCCYNCGKAGHVARDC------DHANEQKCYSCGGFGHI---- 114
Query: 293 ISDAVPGEVSCFRCGQLGHTGL 314
+ +V C+RCG++GH +
Sbjct: 115 --QKLCDKVKCYRCGEIGHVAV 134
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 61/134 (45%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE+GH+A +C + + C+ C H R C + Q C+ C K GH A+D
Sbjct: 40 CYRCGEQGHIARDCE---QTEDACYNCHRSGHISRDCKEPKKEREQCCYNCGKAGHVARD 96
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C N Q C CG GH C +V+CY C GH V + +
Sbjct: 97 CD------HANEQKCYSCGGFGHIQKLC---------DKVKCYRCGEIGH---VAVQCSK 138
Query: 298 PGEVSCFRCGQLGH 311
EV+C+ CG+ GH
Sbjct: 139 ATEVNCYNCGKTGH 152
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 51/110 (46%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNC GH++ +C+ K R++ C+ CG H R C A Q C+ C GH K C
Sbjct: 59 ACYNCHRSGHISRDCKEPKKEREQCCYNCGKAGHVARDCDHANEQKCYSCGGFGHIQKLC 118
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
DK K C +CG+ GH C + EV CY C GHL
Sbjct: 119 -DKVK--------CYRCGEIGHVAVQCSKA------TEVNCYNCGKTGHL 153
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 18/83 (21%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKR----------------KKPCFVCGSLEHGVR 217
+P Q CYNCG+ GH+A +C A ++ K C+ CG + H
Sbjct: 75 EPKKEREQCCYNCGKAGHVARDCDHANEQKCYSCGGFGHIQKLCDKVKCYRCGEIGHVAV 134
Query: 218 QCSKAQD--CFICKKGGHRAKDC 238
QCSKA + C+ C K GH A+DC
Sbjct: 135 QCSKATEVNCYNCGKTGHLARDC 157
>gi|240273725|gb|EER37244.1| F-box protein [Ajellomyces capsulatus H143]
gi|325094843|gb|EGC48153.1| F-box domain-containing protein [Ajellomyces capsulatus H88]
Length = 857
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 25/108 (23%)
Query: 181 QTCYNCGEEGHMAVNC---------------------RSAVKRKKPCFVCGSLEHGVRQC 219
Q CY CG+ GH+A NC R++ C+ CG H R C
Sbjct: 754 QECYKCGQVGHIARNCSQSGGYGSGGYGGATGGGYSGGYGGGRQQTCYSCGGYGHMARDC 813
Query: 220 SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
++ Q C+ C + GH ++DCP + K +VC KC GH +C N
Sbjct: 814 TQGQKCYNCGEVGHVSRDCPTEAK----GERVCYKCKQPGHVQATCPN 857
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 53/150 (35%), Gaps = 54/150 (36%)
Query: 181 QTCYNCGEEGHMAVNCRSA-----------------VKRKKPCFVCGSLEHGVRQCS--- 220
+TCY CG+ GH++ +C SA + C+ CG + H R CS
Sbjct: 714 KTCYRCGQAGHISRDCTSAGSGDSYGNSGGYSGGGGAAGGQECYKCGQVGHIARNCSQSG 773
Query: 221 ----------------------KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDS 258
+ Q C+ C GH A+DC Q C CG+
Sbjct: 774 GYGSGGYGGATGGGYSGGYGGGRQQTCYSCGGYGHMARDC--------TQGQKCYNCGEV 825
Query: 259 GHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
GH C + E CY C+ GH+
Sbjct: 826 GHVSRDCPT----EAKGERVCYKCKQPGHV 851
>gi|34784873|gb|AAH56793.1| Zinc finger protein 9 [Danio rerio]
Length = 161
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 25/142 (17%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP---------CFVCGSLEHGVRQCSKAQD-CFICKKGG 232
C+ CG GH NC +A + + C+ CG H R C + +D C+ C + G
Sbjct: 6 CFGCGRSGHWIKNCPNAGRGRGRGRGRGKDLFCYRCGEQGHIARDCEQTEDACYNCHRSG 65
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVN 292
H ++DC + K + Q C CG +GH C D E +CY C FGH+
Sbjct: 66 HISRDCKEPKK---EREQCCYNCGKAGHVARDC------DHANEQKCYSCGGFGHI---- 112
Query: 293 ISDAVPGEVSCFRCGQLGHTGL 314
+ +V C+RCG++GH +
Sbjct: 113 --QKLCDKVKCYRCGEIGHVAV 132
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 51/110 (46%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNC GH++ +C+ K R++ C+ CG H R C A Q C+ C GH K C
Sbjct: 57 ACYNCHRSGHISRDCKEPKKEREQCCYNCGKAGHVARDCDHANEQKCYSCGGFGHIQKLC 116
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
DK K C +CG+ GH C + EV CY C GHL
Sbjct: 117 -DKVK--------CYRCGEIGHVAVQCSKA------TEVNCYNCGKTGHL 151
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 18/83 (21%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKR----------------KKPCFVCGSLEHGVR 217
+P Q CYNCG+ GH+A +C A ++ K C+ CG + H
Sbjct: 73 EPKKEREQCCYNCGKAGHVARDCDHANEQKCYSCGGFGHIQKLCDKVKCYRCGEIGHVAV 132
Query: 218 QCSKAQD--CFICKKGGHRAKDC 238
QCSKA + C+ C K GH A+DC
Sbjct: 133 QCSKATEVNCYNCGKTGHLARDC 155
>gi|148535009|gb|ABQ85432.1| CCHC-type zinc finger [Cricetulus griseus]
Length = 164
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 70/148 (47%), Gaps = 33/148 (22%)
Query: 177 DRGWQ--------TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQ 223
DRG+Q CY CGE GH+A +C ++ + C+ CG H + C + Q
Sbjct: 26 DRGFQFVSSSLPDICYRCGESGHLAKDCD--LQEDEACYNCGRGGHIAKDCKEPKREREQ 83
Query: 224 DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C K GH A+DC + Q C CG+ GH D +V+CY C
Sbjct: 84 CCYNCGKPGHLARDCD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCG 128
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGH 311
GH V I+ + EV+C+RCG+ GH
Sbjct: 129 ETGH---VAINCSKTSEVNCYRCGESGH 153
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 18/111 (16%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKD 237
+ CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KD
Sbjct: 59 EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKD 118
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C C +CG++GH +C + EV CY C GHL
Sbjct: 119 C---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 154
>gi|254210302|gb|AAO73520.2| cellular nucleic acid-binding protein [Danio rerio]
Length = 163
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 65/142 (45%), Gaps = 25/142 (17%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP---------CFVCGSLEHGVRQCSKAQD-CFICKKGG 232
C+ CG GH NC +A + + C+ CG H R C + +D C+ C + G
Sbjct: 8 CFGCGRSGHWIKNCPNAGRGRGRGRGRGKDLFCYRCGEQGHIARDCEQTEDACYNCHRSG 67
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVN 292
H ++DC + K + Q C CG +GH C D E +CY C FGH
Sbjct: 68 HISRDCKEPKK---EREQCCYNCGKAGHVARDC------DHANEQKCYSCGGFGHF---- 114
Query: 293 ISDAVPGEVSCFRCGQLGHTGL 314
+ +V C+RCG++GH +
Sbjct: 115 --QKLCDKVKCYRCGEIGHVAV 134
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 61/134 (45%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE+GH+A +C + + C+ C H R C + Q C+ C K GH A+D
Sbjct: 40 CYRCGEQGHIARDCE---QTEDACYNCHRSGHISRDCKEPKKEREQCCYNCGKAGHVARD 96
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C N Q C CG GH C +V+CY C GH V + +
Sbjct: 97 CD------HANEQKCYSCGGFGHFQKLC---------DKVKCYRCGEIGH---VAVQCSK 138
Query: 298 PGEVSCFRCGQLGH 311
EV+C+ CG+ GH
Sbjct: 139 ATEVNCYNCGKTGH 152
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 51/110 (46%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNC GH++ +C+ K R++ C+ CG H R C A Q C+ C GH K C
Sbjct: 59 ACYNCHRSGHISRDCKEPKKEREQCCYNCGKAGHVARDCDHANEQKCYSCGGFGHFQKLC 118
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
DK K C +CG+ GH C + EV CY C GHL
Sbjct: 119 -DKVK--------CYRCGEIGHVAVQCSKA------TEVNCYNCGKTGHL 153
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 18/83 (21%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKR----------------KKPCFVCGSLEHGVR 217
+P Q CYNCG+ GH+A +C A ++ K C+ CG + H
Sbjct: 75 EPKKEREQCCYNCGKAGHVARDCDHANEQKCYSCGGFGHFQKLCDKVKCYRCGEIGHVAV 134
Query: 218 QCSKAQD--CFICKKGGHRAKDC 238
QCSKA + C+ C K GH A+DC
Sbjct: 135 QCSKATEVNCYNCGKTGHLARDC 157
>gi|297263145|ref|XP_001093980.2| PREDICTED: hypothetical protein LOC705622 [Macaca mulatta]
Length = 343
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 220 CYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 276
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 277 C------DHADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSK 318
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 319 TSEVNCYRCGESGH 332
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 63/151 (41%), Gaps = 34/151 (22%)
Query: 183 CYNCGEEGHMAVNCRSA----------------VKRKKP--CFVCGSLEHGVRQCSKAQD 224
C+ CG GH A C + V P C+ CG H + C +D
Sbjct: 179 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 238
Query: 225 -CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C +GGH AKDC + + + Q C CG GH C D E +CY C
Sbjct: 239 ACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCG 289
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
FGH+ D +V C+RCG+ GH +
Sbjct: 290 EFGHI----QKDCT--KVKCYRCGETGHVAI 314
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 239 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 298
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 299 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 333
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 9/85 (10%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH A +C
Sbjct: 262 QCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGHVAINC-- 316
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K+ N C +CG+SGH C
Sbjct: 317 -SKTSEVN---CYRCGESGHLAREC 337
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 50/127 (39%), Gaps = 46/127 (36%)
Query: 222 AQDCFICKKGGHRAKDCPD---------KHKSGFQNAQ-----VCLKCGDSGHDMFSCRN 267
+ +CF C + GH A++CP GFQ +C +CG+SGH C
Sbjct: 176 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC-- 233
Query: 268 SYSLDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----------CF 304
DL+E CY C GH+ CC N PG ++ C+
Sbjct: 234 -----DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDHADEQKCY 286
Query: 305 RCGQLGH 311
CG+ GH
Sbjct: 287 SCGEFGH 293
>gi|417396563|gb|JAA45315.1| Putative e3 ubiquitin ligase [Desmodus rotundus]
Length = 178
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 70/148 (47%), Gaps = 33/148 (22%)
Query: 177 DRGWQ--------TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQ 223
DRG+Q CY CGE GH+A +C ++ + C+ CG H + C + Q
Sbjct: 40 DRGFQFVSSSLSDICYRCGESGHLAKDCD--LQEDEACYNCGRGGHIAKDCKEPKREREQ 97
Query: 224 DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C K GH A+DC + Q C CG+ GH D +V+CY C
Sbjct: 98 CCYNCGKPGHLARDCD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCG 142
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGH 311
GH V I+ + EV+C+RCG+ GH
Sbjct: 143 ETGH---VAINCSKTSEVNCYRCGESGH 167
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 18/111 (16%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKD 237
+ CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KD
Sbjct: 73 EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKD 132
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C C +CG++GH +C + EV CY C GHL
Sbjct: 133 C---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 168
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 90 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 146
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 147 VAINCS-------KTSEVNCYRCGESGH 167
>gi|357606571|gb|EHJ65114.1| putative zinc finger protein [Danaus plexippus]
Length = 420
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 221 KAQDCFICKKGGHRAKDCPD--KHKSGFQNAQ-VCLKCGDSGHDMFSCRNSYSLDDLKEV 277
K + C+ C+KGGH DCPD H G +A+ VC KCG + H F C+ + +
Sbjct: 275 KREVCYNCRKGGHNLSDCPDLKSHIPGVDSAEGVCFKCGSTEHRQFECKVQKD-KEFRFA 333
Query: 278 QCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
C+ICR GH+ C N P SC CG + H
Sbjct: 334 TCFICREPGHIARQCPDNPKGLYPNGGSCKLCGDVTH 370
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 45/95 (47%), Gaps = 16/95 (16%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP--------CFVCGSLEHGVRQCSKAQD-------C 225
+ CYNC + GH +C +K P CF CGS EH +C +D C
Sbjct: 277 EVCYNCRKGGHNLSDC-PDLKSHIPGVDSAEGVCFKCGSTEHRQFECKVQKDKEFRFATC 335
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
FIC++ GH A+ CPD K + N C CGD H
Sbjct: 336 FICREPGHIARQCPDNPKGLYPNGGSCKLCGDVTH 370
>gi|7304969|ref|NP_038521.1| cellular nucleic acid-binding protein isoform 1 [Mus musculus]
gi|187608732|ref|NP_001120665.1| cellular nucleic acid-binding protein isoform 2 [Homo sapiens]
gi|395847858|ref|XP_003796581.1| PREDICTED: cellular nucleic acid-binding protein-like isoform 1
[Otolemur garnettii]
gi|395847860|ref|XP_003796582.1| PREDICTED: cellular nucleic acid-binding protein-like isoform 2
[Otolemur garnettii]
gi|395847862|ref|XP_003796583.1| PREDICTED: cellular nucleic acid-binding protein-like isoform 3
[Otolemur garnettii]
gi|50403746|sp|P53996.2|CNBP_MOUSE RecName: Full=Cellular nucleic acid-binding protein; Short=CNBP;
AltName: Full=Zinc finger protein 9
gi|854675|gb|AAB60490.1| cellular nucleic acid binding protein [Mus musculus]
gi|30059133|gb|AAO31613.1| cellular nucleic acid binding protein [Mus musculus]
gi|37194897|gb|AAH58723.1| Cellular nucleic acid binding protein [Mus musculus]
gi|40738015|gb|AAR89463.1| cellular nucleic acid binding protein [Mus musculus]
gi|54696094|gb|AAV38419.1| zinc finger protein 9 (a cellular retroviral nucleic acid binding
protein) [Homo sapiens]
gi|68304555|gb|AAY89856.1| cellular nucleic acid binding protein alpha variant 1 [Homo
sapiens]
gi|74194928|dbj|BAE26042.1| unnamed protein product [Mus musculus]
gi|74204641|dbj|BAE35390.1| unnamed protein product [Mus musculus]
gi|310756754|gb|ADP20518.1| cellular nucleic acid binding protein [Heterocephalus glaber]
Length = 178
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 70/148 (47%), Gaps = 33/148 (22%)
Query: 177 DRGWQ--------TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQ 223
DRG+Q CY CGE GH+A +C ++ + C+ CG H + C + Q
Sbjct: 40 DRGFQFVSSSLPDICYRCGESGHLAKDCD--LQEDEACYNCGRGGHIAKDCKEPKREREQ 97
Query: 224 DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C K GH A+DC + Q C CG+ GH D +V+CY C
Sbjct: 98 CCYNCGKPGHLARDCD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCG 142
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGH 311
GH V I+ + EV+C+RCG+ GH
Sbjct: 143 ETGH---VAINCSKTSEVNCYRCGESGH 167
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 18/111 (16%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKD 237
+ CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KD
Sbjct: 73 EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKD 132
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C C +CG++GH +C + EV CY C GHL
Sbjct: 133 C---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 168
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 90 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 146
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 147 VAINCS-------KTSEVNCYRCGESGH 167
>gi|310756752|gb|ADP20517.1| cellular nucleic acid binding protein [Fukomys anselli]
Length = 178
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 70/148 (47%), Gaps = 33/148 (22%)
Query: 177 DRGWQ--------TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQ 223
DRG+Q CY CGE GH+A +C ++ + C+ CG H + C + Q
Sbjct: 40 DRGFQFVSSSLPDICYRCGESGHLAKDCD--LQEDEACYNCGRGGHIAKDCKEPKREREQ 97
Query: 224 DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C K GH A+DC + Q C CG+ GH D +V+CY C
Sbjct: 98 CCYNCGKPGHLARDCD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCG 142
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGH 311
GH V I+ + EV+C+RCG+ GH
Sbjct: 143 ETGH---VAINCSKTSEVNCYRCGESGH 167
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 18/111 (16%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKD 237
+ CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KD
Sbjct: 73 EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKD 132
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C C +CG++GH +C + EV CY C GHL
Sbjct: 133 C---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 168
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 90 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 146
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 147 VAINCS-------KTSEVNCYRCGESGH 167
>gi|58802483|gb|AAW82446.1| cellular nucleic acid-binding protein [Carassius gibelio]
Length = 163
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 25/142 (17%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP---------CFVCGSLEHGVRQCSKAQD-CFICKKGG 232
C+ CG GH NC +A + + C+ CG H R C + +D C+ C + G
Sbjct: 8 CFGCGRSGHWIKNCPNAGRGRGRGRGRGKDLFCYRCGEQGHIARDCEQTEDACYNCHRSG 67
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVN 292
H ++DC + K + Q C CG +GH C D E +CY C FGH+
Sbjct: 68 HISRDCKEPKK---EREQSCYNCGKAGHVARDC------DHGNEQKCYSCGGFGHI---- 114
Query: 293 ISDAVPGEVSCFRCGQLGHTGL 314
+ +V C+RCG++GH +
Sbjct: 115 --QKLCDKVKCYRCGEIGHVAV 134
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 61/134 (45%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE+GH+A +C + + C+ C H R C + Q C+ C K GH A+D
Sbjct: 40 CYRCGEQGHIARDCE---QTEDACYNCHRSGHISRDCKEPKKEREQSCYNCGKAGHVARD 96
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C N Q C CG GH C +V+CY C GH V + +
Sbjct: 97 CDHG------NEQKCYSCGGFGHIQKLC---------DKVKCYRCGEIGH---VAVQCSK 138
Query: 298 PGEVSCFRCGQLGH 311
EV+C+ CG+ GH
Sbjct: 139 ATEVNCYNCGKTGH 152
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 18/83 (21%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKR----------------KKPCFVCGSLEHGVR 217
+P Q+CYNCG+ GH+A +C ++ K C+ CG + H
Sbjct: 75 EPKKEREQSCYNCGKAGHVARDCDHGNEQKCYSCGGFGHIQKLCDKVKCYRCGEIGHVAV 134
Query: 218 QCSKAQD--CFICKKGGHRAKDC 238
QCSKA + C+ C K GH A++C
Sbjct: 135 QCSKATEVNCYNCGKTGHLAREC 157
>gi|348540577|ref|XP_003457764.1| PREDICTED: cellular nucleic acid-binding protein-like isoform 1
[Oreochromis niloticus]
Length = 161
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 29/144 (20%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP---------CFVCGSLEHGVRQCSKAQD-CFICKKGG 232
C+ CG GH NC S + + C+ CG L H R C + +D C+ C +
Sbjct: 6 CFGCGHSGHWVKNCPSGGRGRGKGRGRGKDLFCYRCGELGHVARDCERTEDACYNCGRED 65
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL--CC 290
H ++DC + K + Q+C CG +GH +C +++ E +CY C FGH+ CC
Sbjct: 66 HISRDCKEPKK---EREQLCYNCGKAGHMARNCNHAH------EQKCYSCGSFGHIQKCC 116
Query: 291 VNISDAVPGEVSCFRCGQLGHTGL 314
+V C+RCG++GH +
Sbjct: 117 E--------KVKCYRCGEIGHVAV 132
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C + + C+ CG +H R C + Q C+ C K GH A++
Sbjct: 38 CYRCGELGHVARDCE---RTEDACYNCGREDHISRDCKEPKKEREQLCYNCGKAGHMARN 94
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C H+ Q C CG GH C ++V+CY C GH V + +
Sbjct: 95 CNHAHE------QKCYSCGSFGHIQKCC---------EKVKCYRCGEIGH---VAVHCSK 136
Query: 298 PGEVSCFRCGQLGH 311
E++C+ G+ GH
Sbjct: 137 ASELNCYNYGKSGH 150
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GHMA NC A ++K C+ CGS H +++C + C+ C + GH
Sbjct: 73 EPKKEREQLCYNCGKAGHMARNCNHAHEQK--CYSCGSFGH-IQKCCEKVKCYRCGEIGH 129
Query: 234 RAKDC 238
A C
Sbjct: 130 VAVHC 134
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 12/99 (12%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGH 233
+R CYNCG E H++ +C+ K R++ C+ CG H R C+ A Q C+ C GH
Sbjct: 52 ERTEDACYNCGREDHISRDCKEPKKEREQLCYNCGKAGHMARNCNHAHEQKCYSCGSFGH 111
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
K C +K K C +CG+ GH C + L+
Sbjct: 112 IQK-CCEKVK--------CYRCGEIGHVAVHCSKASELN 141
>gi|146104184|ref|XP_001469753.1| putative poly-zinc finger protein 2 [Leishmania infantum JPCM5]
gi|398024250|ref|XP_003865286.1| poly-zinc finger protein 2, putative [Leishmania donovani]
gi|134074123|emb|CAM72865.1| putative poly-zinc finger protein 2 [Leishmania infantum JPCM5]
gi|322503523|emb|CBZ38609.1| poly-zinc finger protein 2, putative [Leishmania donovani]
Length = 135
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 59/136 (43%), Gaps = 18/136 (13%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CG GH + C SA PCF CG H ++C ++ CF C+K GHRA+D
Sbjct: 3 CYRCGGVGHQSRECTSAAD-SAPCFRCGKPGHVAKECVSTITAEEAPCFYCQKPGHRARD 61
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL--CCVNISD 295
CP+ +C C GH C N CY+C GH+ C
Sbjct: 62 CPEAPPK--SETVMCYNCSQKGHIASECTN--------PAHCYLCNEDGHIGRSCPTAPK 111
Query: 296 AVPGEVSCFRCGQLGH 311
+ +C +CG+ GH
Sbjct: 112 RSAADKTCRKCGKKGH 127
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 42/102 (41%), Gaps = 15/102 (14%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFD----PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKP 205
E V+T+ + G R D PP CYNC ++GH+A C +
Sbjct: 37 ECVSTITAEEAPCFYCQKPGHRARDCPEAPPKSETVMCYNCSQKGHIASECTNPAH---- 92
Query: 206 CFVCGSLEHGVRQCSKA-------QDCFICKKGGHRAKDCPD 240
C++C H R C A + C C K GH KDCPD
Sbjct: 93 CYLCNEDGHIGRSCPTAPKRSAADKTCRKCGKKGHLRKDCPD 134
>gi|119496265|ref|XP_001264906.1| zinc knuckle domain protein [Neosartorya fischeri NRRL 181]
gi|119413068|gb|EAW23009.1| zinc knuckle domain protein [Neosartorya fischeri NRRL 181]
Length = 170
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 16/107 (14%)
Query: 173 FDPPDRGWQTCYNCGEEGHMAVNC------------RSAVKRKKPCFVCGSLEHGVRQCS 220
++ G Q CY CG+ GH+A NC R++ C+ CG H R C+
Sbjct: 68 YNGAPSGGQECYKCGQVGHIARNCSQGGNYGGGFGHGGYGGRQQTCYSCGGFGHMARDCT 127
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
Q C+ C GH ++DCP + K +VC KC GH +C N
Sbjct: 128 HGQKCYNCGDVGHVSRDCPTEAK----GERVCYKCKQPGHVQAACPN 170
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 59/149 (39%), Gaps = 39/149 (26%)
Query: 189 EGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA-------------QDCFICKKGGHRA 235
+GH++ C A K K C+ CG H R+CS+A Q+C+ C + GH A
Sbjct: 30 QGHVSRECTVAPKEKS-CYRCGVAGHISRECSQAGSGDNYNGAPSGGQECYKCGQVGHIA 88
Query: 236 KDCPDKHKSGFQNA--------QVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGH 287
++C G Q C CG GH C + +CY C GH
Sbjct: 89 RNCSQGGNYGGGFGHGGYGGRQQTCYSCGGFGHMARDCTHGQ--------KCYNCGDVGH 140
Query: 288 LCCVNISDAVP----GEVSCFRCGQLGHT 312
+S P GE C++C Q GH
Sbjct: 141 -----VSRDCPTEAKGERVCYKCKQPGHV 164
>gi|310792827|gb|EFQ28288.1| zinc knuckle [Glomerella graminicola M1.001]
Length = 454
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 19/138 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ------DCFICKKGGHRA 235
TCYNCGEEGH +C + K C CG H V +C++ + +C C + GH +
Sbjct: 274 TCYNCGEEGHRVRDCPTPRVDKFACKNCGQSGHKVSECTEPRKAGDDVECNKCHEMGHFS 333
Query: 236 KDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNI 293
+DCP + G + C CG+ GH C + ++++C C GHL C
Sbjct: 334 RDCP---QGGGGGGRACHNCGNEGHISREC------PEPRKIKCRNCDADGHLSKDCDKP 384
Query: 294 SDAVPGEVSCFRCGQLGH 311
D + C CG++GH
Sbjct: 385 VDVT--RIKCNNCGEMGH 400
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQC--SKAQDCFICKKGGHRAKD 237
+ C+NCG+ GH +C K C CG H R C + A C IC + GH KD
Sbjct: 32 RACFNCGQSGHNKADCPERPKGFDGTCRACGQEGHSRRDCPDAPAMTCRICGEEGHIRKD 91
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
CP K A C C + GH+ C+ +D
Sbjct: 92 CPQK------PADACRNCLEEGHETVECKAPRKID 120
>gi|354622941|ref|NP_001135177.2| zinc finger protein 9 [Salmo salar]
gi|221219922|gb|ACM08622.1| Cellular nucleic acid-binding protein [Salmo salar]
gi|221219978|gb|ACM08650.1| Cellular nucleic acid-binding protein [Salmo salar]
Length = 164
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 65/143 (45%), Gaps = 26/143 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----------CFVCGSLEHGVRQCSKAQD-CFICKKG 231
C+ CG GH NC A R + C+ CG H R C + +D C+ C +
Sbjct: 8 CFRCGRPGHWIKNCPEAGGRGRGRGRGRGKDLFCYRCGEQGHIARDCEQTEDACYNCHRS 67
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCV 291
GH ++DC + K + Q C CG +GH C D E +CY C FGH+
Sbjct: 68 GHISRDCKEPKK---EREQCCYSCGKAGHVARDC------DHANEQKCYSCGGFGHI--- 115
Query: 292 NISDAVPGEVSCFRCGQLGHTGL 314
+ +V C+RCG++GH +
Sbjct: 116 ---QKLCDKVKCYRCGEIGHVAV 135
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 61/134 (45%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE+GH+A +C + + C+ C H R C + Q C+ C K GH A+D
Sbjct: 41 CYRCGEQGHIARDCE---QTEDACYNCHRSGHISRDCKEPKKEREQCCYSCGKAGHVARD 97
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C N Q C CG GH C +V+CY C GH V + +
Sbjct: 98 CD------HANEQKCYSCGGFGHIQKLC---------DKVKCYRCGEIGH---VAVQCSK 139
Query: 298 PGEVSCFRCGQLGH 311
EV+C++CG GH
Sbjct: 140 ASEVNCYKCGNTGH 153
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 51/110 (46%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNC GH++ +C+ K R++ C+ CG H R C A Q C+ C GH K C
Sbjct: 60 ACYNCHRSGHISRDCKEPKKEREQCCYSCGKAGHVARDCDHANEQKCYSCGGFGHIQKLC 119
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
DK K C +CG+ GH C + EV CY C GHL
Sbjct: 120 -DKVK--------CYRCGEIGHVAVQCSKA------SEVNCYKCGNTGHL 154
Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CY+CG+ GH+A +C A ++K C+ CG H + C K + C+ C + GH
Sbjct: 76 EPKKEREQCCYSCGKAGHVARDCDHANEQK--CYSCGGFGHIQKLCDKVK-CYRCGEIGH 132
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
A C K+ N C KCG++GH
Sbjct: 133 VAVQCS---KASEVN---CYKCGNTGH 153
>gi|432865753|ref|XP_004070596.1| PREDICTED: cellular nucleic acid-binding protein-like isoform 3
[Oryzias latipes]
Length = 164
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 25/142 (17%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP---------CFVCGSLEHGVRQCSKAQD-CFICKKGG 232
C+ CG GH +C +A + C+ CG H R C + +D C+ C + G
Sbjct: 9 CFGCGRPGHWVKHCPNASGTRGRGRGRGRELFCYRCGDQGHMARDCDQTEDACYNCHRSG 68
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVN 292
H ++DC + K + Q+C CG +GH C D E +CY C FGH+
Sbjct: 69 HISRDCKEPKK---EREQLCYTCGKAGHMARDC------DHANEQKCYSCGGFGHI---- 115
Query: 293 ISDAVPGEVSCFRCGQLGHTGL 314
+ +V C+RCG++GH +
Sbjct: 116 --QKLCDKVKCYRCGEIGHVAV 135
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 50/110 (45%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNC GH++ +C+ K R++ C+ CG H R C A Q C+ C GH K C
Sbjct: 60 ACYNCHRSGHISRDCKEPKKEREQLCYTCGKAGHMARDCDHANEQKCYSCGGFGHIQKLC 119
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
DK K C +CG+ GH C + E CY C GHL
Sbjct: 120 -DKVK--------CYRCGEIGHVAVHCSKA------SETNCYNCGKAGHL 154
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CY CG+ GHMA +C A ++K C+ CG H + C K + C+ C + GH
Sbjct: 76 EPKKEREQLCYTCGKAGHMARDCDHANEQK--CYSCGGFGHIQKLCDKVK-CYRCGEIGH 132
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
A C ++ C CG +GH
Sbjct: 133 VAVHCSKASETN------CYNCGKAGH 153
>gi|357444017|ref|XP_003592286.1| Zinc finger CCHC domain-containing protein [Medicago truncatula]
gi|355481334|gb|AES62537.1| Zinc finger CCHC domain-containing protein [Medicago truncatula]
Length = 262
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 206 CFVCGSLEHGVRQCSKAQD------CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
CF+C L+H + C++ + C C++ GHRA++CPD ++ + C CGD+G
Sbjct: 69 CFICKGLDHIAKFCTQKAEWEKNKICLRCRRRGHRAQNCPDGGSK--EDFKYCYNCGDNG 126
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
H + +C + QC++C+ GHL C N P C CG + H
Sbjct: 127 HSLANCPHPLQEGGTMFAQCFVCKEQGHLSKNCPKNAHGIYPKGGCCKICGGVTH 181
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 50/108 (46%), Gaps = 16/108 (14%)
Query: 159 DNIVLRKLLRGPRYFDPPDRG----WQTCYNCGEEGHMAVNCRSAVKRK----KPCFVCG 210
+ I LR RG R + PD G ++ CYNCG+ GH NC ++ CFVC
Sbjct: 91 NKICLRCRRRGHRAQNCPDGGSKEDFKYCYNCGDNGHSLANCPHPLQEGGTMFAQCFVCK 150
Query: 211 SLEHGVRQCSKAQD--------CFICKKGGHRAKDCPDKHKSGFQNAQ 250
H + C K C IC H A+DCPDK ++GF + +
Sbjct: 151 EQGHLSKNCPKNAHGIYPKGGCCKICGGVTHLARDCPDKGQNGFGDGR 198
>gi|156082886|ref|XP_001608927.1| zinc knuckle domain containing protein [Babesia bovis T2Bo]
gi|154796177|gb|EDO05359.1| zinc knuckle domain containing protein [Babesia bovis]
Length = 200
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-------CFIC 228
P R +TC+ C + GH C +A CF CGS +H +R C + CFIC
Sbjct: 97 PKRVRKTCFKCRKRGHTLRECSAA--EVGICFRCGSTDHILRDCQDPDNGTLPFTSCFIC 154
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
KK GH A CPD K + N C CG H
Sbjct: 155 KKNGHIASQCPDNDKGIYPNGGCCFFCGSVTH 186
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 223 QDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYIC 282
+ CF C+K GH ++C +C +CG + H + C++ + L C+IC
Sbjct: 102 KTCFKCRKRGHTLREC------SAAEVGICFRCGSTDHILRDCQDPDN-GTLPFTSCFIC 154
Query: 283 RCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+ GH+ C N P CF CG + H
Sbjct: 155 KKNGHIASQCPDNDKGIYPNGGCCFFCGSVTH 186
>gi|429849218|gb|ELA24622.1| zinc knuckle domain protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 185
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 68/159 (42%), Gaps = 31/159 (19%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC----------SKAQDC 225
P+RG CYNCG EGHM+ +C K K C+ CG H R C + + +C
Sbjct: 28 PNRGAAKCYNCGNEGHMSRDCPEGPKDTKSCYRCGQAGHISRDCPQGGNVGGGGASSSEC 87
Query: 226 FICKKGGHRAKDCPDK-----------HKSGFQNA--QVCLKCGDSGHDMFSCRNSYSLD 272
+ C + GH A++CP + G+ A + C CG GH C N
Sbjct: 88 YKCGEVGHIARNCPKSGGGYGGGGACYNSGGYGGASQKTCYSCGGYGHMSRDCTNG---- 143
Query: 273 DLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
+CY C GH ++ GE C++C Q GH
Sbjct: 144 ----SKCYNCGENGHFSRDCPKESSGGEKICYKCQQPGH 178
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 67/160 (41%), Gaps = 37/160 (23%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNC--RSAVKRKKPCFVCGSLEHGVRQCSKA----QDCFIC 228
PP R TC+ CG GH A C R A K C+ CG+ H R C + + C+ C
Sbjct: 9 PPAR---TCFTCGAAGHQARECPNRGAAK----CYNCGNEGHMSRDCPEGPKDTKSCYRC 61
Query: 229 KKGGHRAKDCPDKHKSGFQNAQV--CLKCGDSGH-------------DMFSCRNSYSLDD 273
+ GH ++DCP G A C KCG+ GH +C NS
Sbjct: 62 GQAGHISRDCPQGGNVGGGGASSSECYKCGEVGHIARNCPKSGGGYGGGGACYNSGGYGG 121
Query: 274 LKEVQCYICRCFGHLC--CVNISDAVPGEVSCFRCGQLGH 311
+ CY C +GH+ C N S C+ CG+ GH
Sbjct: 122 ASQKTCYSCGGYGHMSRDCTNGSK-------CYNCGENGH 154
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 20/102 (19%)
Query: 183 CYNCGEEGHMAVNCRSAV-----------------KRKKPCFVCGSLEHGVRQCSKAQDC 225
CY CGE GH+A NC + +K C+ CG H R C+ C
Sbjct: 87 CYKCGEVGHIARNCPKSGGGYGGGGACYNSGGYGGASQKTCYSCGGYGHMSRDCTNGSKC 146
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
+ C + GH ++DCP + G ++C KC GH C N
Sbjct: 147 YNCGENGHFSRDCPKESSGG---EKICYKCQQPGHVQSQCPN 185
>gi|157876790|ref|XP_001686737.1| putative poly-zinc finger protein 2 [Leishmania major strain
Friedlin]
gi|68129812|emb|CAJ09118.1| putative poly-zinc finger protein 2 [Leishmania major strain
Friedlin]
Length = 135
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 59/136 (43%), Gaps = 18/136 (13%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CG GH + C SA PCF CG H R+C ++ CF C+K GHRA++
Sbjct: 3 CYRCGGVGHQSRECTSAAD-SAPCFRCGKPGHVARECVSTITAEEAPCFYCQKPGHRARE 61
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL--CCVNISD 295
CP+ +C C GH C N CY+C GH+ C
Sbjct: 62 CPEAPPK--SETVICYNCSQKGHIASECTNP--------AHCYLCNEDGHIGRSCPTAPK 111
Query: 296 AVPGEVSCFRCGQLGH 311
+ +C +CG+ GH
Sbjct: 112 RSVADKTCRKCGRKGH 127
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA-------QDCFI 227
PP CYNC ++GH+A C + C++C H R C A + C
Sbjct: 66 PPKSETVICYNCSQKGHIASECTNPAH----CYLCNEDGHIGRSCPTAPKRSVADKTCRK 121
Query: 228 CKKGGHRAKDCPD 240
C + GH KDCPD
Sbjct: 122 CGRKGHLRKDCPD 134
>gi|197632623|gb|ACH71035.1| zinc finger protein 9-2 [Salmo salar]
Length = 162
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 65/143 (45%), Gaps = 26/143 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----------CFVCGSLEHGVRQCSKAQD-CFICKKG 231
C+ CG GH NC A R + C+ CG H R C + +D C+ C +
Sbjct: 6 CFRCGRPGHWIKNCPEAGGRGRGRGRGRGKDLFCYRCGEQGHIARDCEQTEDACYNCHRS 65
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCV 291
GH ++DC + K + Q C CG +GH C D E +CY C FGH+
Sbjct: 66 GHISRDCKEPKK---EREQCCYSCGKAGHVARDC------DHANEQKCYSCGGFGHI--- 113
Query: 292 NISDAVPGEVSCFRCGQLGHTGL 314
+ +V C+RCG++GH +
Sbjct: 114 ---QKLCDKVKCYRCGEIGHVAV 133
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 61/134 (45%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE+GH+A +C + + C+ C H R C + Q C+ C K GH A+D
Sbjct: 39 CYRCGEQGHIARDCE---QTEDACYNCHRSGHISRDCKEPKKEREQCCYSCGKAGHVARD 95
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C N Q C CG GH C +V+CY C GH V + +
Sbjct: 96 CD------HANEQKCYSCGGFGHIQKLC---------DKVKCYRCGEIGH---VAVQCSK 137
Query: 298 PGEVSCFRCGQLGH 311
EV+C++CG GH
Sbjct: 138 ASEVNCYKCGNTGH 151
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 51/110 (46%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNC GH++ +C+ K R++ C+ CG H R C A Q C+ C GH K C
Sbjct: 58 ACYNCHRSGHISRDCKEPKKEREQCCYSCGKAGHVARDCDHANEQKCYSCGGFGHIQKLC 117
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
DK K C +CG+ GH C + EV CY C GHL
Sbjct: 118 -DKVK--------CYRCGEIGHVAVQCSKA------SEVNCYKCGNTGHL 152
Score = 43.9 bits (102), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CY+CG+ GH+A +C A ++K C+ CG H + C K + C+ C + GH
Sbjct: 74 EPKKEREQCCYSCGKAGHVARDCDHANEQK--CYSCGGFGHIQKLCDKVK-CYRCGEIGH 130
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
A C K+ N C KCG++GH
Sbjct: 131 VAVQCS---KASEVN---CYKCGNTGH 151
>gi|348502965|ref|XP_003439037.1| PREDICTED: cellular nucleic acid-binding protein-like [Oreochromis
niloticus]
Length = 166
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 27/144 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVK-----------RKKPCFVCGSLEHGVRQCSKAQD-CFICKK 230
C+ CG GH +C +A ++ C+ CG H R C + +D C+ C +
Sbjct: 9 CFGCGRSGHWVKHCPNASGSRGRGRGRGRGKELFCYRCGDQGHMARDCDQTEDACYNCHR 68
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCC 290
GH ++DC + K + Q+C CG +GH C D E +CY C FGH+
Sbjct: 69 SGHISRDCKEPKK---EREQLCYTCGKAGHMARDC------DHANEQKCYSCGGFGHI-- 117
Query: 291 VNISDAVPGEVSCFRCGQLGHTGL 314
+ +V C+RCG++GH +
Sbjct: 118 ----QKLCDKVKCYRCGEIGHVAV 137
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 50/110 (45%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNC GH++ +C+ K R++ C+ CG H R C A Q C+ C GH K C
Sbjct: 62 ACYNCHRSGHISRDCKEPKKEREQLCYTCGKAGHMARDCDHANEQKCYSCGGFGHIQKLC 121
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
DK K C +CG+ GH C + E CY C GHL
Sbjct: 122 -DKVK--------CYRCGEIGHVAVHCSKA------SETNCYNCGKAGHL 156
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CY CG+ GHMA +C A ++K C+ CG H + C K + C+ C + GH
Sbjct: 78 EPKKEREQLCYTCGKAGHMARDCDHANEQK--CYSCGGFGHIQKLCDKVK-CYRCGEIGH 134
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
A C ++ C CG +GH
Sbjct: 135 VAVHCSKASETN------CYNCGKAGH 155
>gi|432865749|ref|XP_004070594.1| PREDICTED: cellular nucleic acid-binding protein-like isoform 1
[Oryzias latipes]
gi|432865751|ref|XP_004070595.1| PREDICTED: cellular nucleic acid-binding protein-like isoform 2
[Oryzias latipes]
Length = 166
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 27/144 (18%)
Query: 183 CYNCGEEGHMAVNCRSA-----------VKRKKPCFVCGSLEHGVRQCSKAQD-CFICKK 230
C+ CG GH +C +A ++ C+ CG H R C + +D C+ C +
Sbjct: 9 CFGCGRPGHWVKHCPNASGTRGRGRGRGRGKELFCYRCGDQGHMARDCDQTEDACYNCHR 68
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCC 290
GH ++DC + K + Q+C CG +GH C D E +CY C FGH+
Sbjct: 69 SGHISRDCKEPKK---EREQLCYTCGKAGHMARDC------DHANEQKCYSCGGFGHI-- 117
Query: 291 VNISDAVPGEVSCFRCGQLGHTGL 314
+ +V C+RCG++GH +
Sbjct: 118 ----QKLCDKVKCYRCGEIGHVAV 137
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 50/110 (45%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNC GH++ +C+ K R++ C+ CG H R C A Q C+ C GH K C
Sbjct: 62 ACYNCHRSGHISRDCKEPKKEREQLCYTCGKAGHMARDCDHANEQKCYSCGGFGHIQKLC 121
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
DK K C +CG+ GH C + E CY C GHL
Sbjct: 122 -DKVK--------CYRCGEIGHVAVHCSKA------SETNCYNCGKAGHL 156
Score = 43.9 bits (102), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CY CG+ GHMA +C A ++K C+ CG H + C K + C+ C + GH
Sbjct: 78 EPKKEREQLCYTCGKAGHMARDCDHANEQK--CYSCGGFGHIQKLCDKVK-CYRCGEIGH 134
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
A C ++ C CG +GH
Sbjct: 135 VAVHCSKASETN------CYNCGKAGH 155
>gi|408387760|gb|EKJ67470.1| hypothetical protein FPSE_12389 [Fusarium pseudograminearum CS3096]
Length = 180
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 70/156 (44%), Gaps = 29/156 (18%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC------SKAQDCFI 227
D P +G CYNCG EGHM+ +C +K K C+ CG H R C +A +C+
Sbjct: 28 DCPTKGPAKCYNCGGEGHMSRDCTEPMKDNKSCYKCGQPGHISRDCPMSGGSGQATECYK 87
Query: 228 CKKGGHRAKDCPDKHKSGFQN------------AQVCLKCGDSGHDMFSCRNSYSLDDLK 275
C + GH A++C +KS + N + C CG GH C N
Sbjct: 88 CGEIGHIARNC---NKSSYGNNYGGGFQQQGGAGKTCYSCGGFGHMSRECVNG------- 137
Query: 276 EVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
++CY C GH ++ GE C++C Q GH
Sbjct: 138 -MKCYNCGESGHYSRDCPKESAGGEKICYKCQQPGH 172
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 64/145 (44%), Gaps = 26/145 (17%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA----QDCFICKKGGHRAKD 237
CY+CG H A +C K C+ CG H R C++ + C+ C + GH ++D
Sbjct: 15 ACYSCGSTAHQARDC--PTKGPAKCYNCGGEGHMSRDCTEPMKDNKSCYKCGQPGHISRD 72
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQ---------CYICRCFGHL 288
CP SG A C KCG+ GH +C S ++ CY C FGH+
Sbjct: 73 CPMSGGSG--QATECYKCGEIGHIARNCNKSSYGNNYGGGFQQQGGAGKTCYSCGGFGHM 130
Query: 289 C--CVNISDAVPGEVSCFRCGQLGH 311
CVN + C+ CG+ GH
Sbjct: 131 SRECVN-------GMKCYNCGESGH 148
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 16/96 (16%)
Query: 183 CYNCGEEGHMAVNCRSA-------------VKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
CY CGE GH+A NC + K C+ CG H R+C C+ C
Sbjct: 85 CYKCGEIGHIARNCNKSSYGNNYGGGFQQQGGAGKTCYSCGGFGHMSRECVNGMKCYNCG 144
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ GH ++DCP + G ++C KC GH C
Sbjct: 145 ESGHYSRDCPKESAGG---EKICYKCQQPGHVQSQC 177
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGHRA 235
+TCY+CG GHM+ C + +K C+ CG H R C K C+ C++ GH
Sbjct: 119 KTCYSCGGFGHMSRECVNGMK----CYNCGESGHYSRDCPKESAGGEKICYKCQQPGHVQ 174
Query: 236 KDCP 239
CP
Sbjct: 175 SQCP 178
>gi|145238910|ref|XP_001392102.1| cellular nucleic acid-binding protein [Aspergillus niger CBS
513.88]
gi|134076603|emb|CAK45156.1| unnamed protein product [Aspergillus niger]
Length = 171
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 66/157 (42%), Gaps = 33/157 (21%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA----------- 222
D P +G TCYNCG +GH++ C A K K C+ CG + H R+C +
Sbjct: 22 DCPKKGTPTCYNCGGQGHVSRECTVAPKEKS-CYRCGGVGHISRECQASPAEGFGAAAGG 80
Query: 223 -QDCFICKKGGHRAKDCPDKHKSGFQNA---QVCLKCGDSGHDMFSCRNSYSLDDLKEVQ 278
Q+C+ C + GH A++CP Q C CG GH C N + EV
Sbjct: 81 GQECYKCGRVGHIARNCPQSGGYSGGFGGRQQTCYSCGGFGHMARDCTNGQKCYNCGEV- 139
Query: 279 CYICRCFGHLCCVNISDAVP----GEVSCFRCGQLGH 311
GH +S P GE C+ C Q GH
Sbjct: 140 -------GH-----VSRDCPTEAKGERVCYNCKQPGH 164
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 181 QTCYNCGEEGHMAVNC-------RSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
Q CY CG GH+A NC R++ C+ CG H R C+ Q C+ C + GH
Sbjct: 82 QECYKCGRVGHIARNCPQSGGYSGGFGGRQQTCYSCGGFGHMARDCTNGQKCYNCGEVGH 141
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
++DCP + K +VC C GH +C N
Sbjct: 142 VSRDCPTEAK----GERVCYNCKQPGHVQAACPN 171
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 19/144 (13%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCS---KAQDCFICKKGGHR 234
G + C+NCG+ H A +C K+ P C+ CG H R+C+ K + C+ C GH
Sbjct: 6 GGRGCFNCGDASHQARDC---PKKGTPTCYNCGGQGHVSRECTVAPKEKSCYRCGGVGHI 62
Query: 235 AKDC----PDKHKSGFQNAQVCLKCGDSGHDMFSC---RNSYSLDDLKEVQCYICRCFGH 287
+++C + + Q C KCG GH +C ++ CY C FGH
Sbjct: 63 SRECQASPAEGFGAAAGGGQECYKCGRVGHIARNCPQSGGYSGGFGGRQQTCYSCGGFGH 122
Query: 288 LCCVNISDAVPGEVSCFRCGQLGH 311
+ D G+ C+ CG++GH
Sbjct: 123 M----ARDCTNGQ-KCYNCGEVGH 141
>gi|118401479|ref|XP_001033060.1| Zinc knuckle family protein [Tetrahymena thermophila]
gi|89287406|gb|EAR85397.1| Zinc knuckle family protein [Tetrahymena thermophila SB210]
Length = 352
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 183 CYNCGEEGHMAVNC---RSAVKRKKPCFVCGSLEHGVRQCSKAQD-------CFICKKGG 232
C C E GH+ +C +S+ ++ C+ CGS EH ++ C K + CF+C+K G
Sbjct: 216 CLGCREVGHLVADCPNAKSSKAKQNICYNCGSNEHTLKDCKKKKTGALKFAFCFVCQKQG 275
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
H ++DCP+ K + C CGD H +C
Sbjct: 276 HISRDCPENDKGLYYKGGGCFICGDVHHTQANC 308
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRC 284
C C++ GH DCP+ KS +C CG + H + C+ + LK C++C+
Sbjct: 216 CLGCREVGHLVADCPNA-KSSKAKQNICYNCGSNEHTLKDCKKKKT-GALKFAFCFVCQK 273
Query: 285 FGHL---CCVNISDAVPGEVSCFRCGQLGHT 312
GH+ C N CF CG + HT
Sbjct: 274 QGHISRDCPENDKGLYYKGGGCFICGDVHHT 304
>gi|358390183|gb|EHK39589.1| hypothetical protein TRIATDRAFT_302941 [Trichoderma atroviride IMI
206040]
Length = 176
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 69/160 (43%), Gaps = 33/160 (20%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ---------D 224
D P +G CYNCG EGH++ +C +K K C+ CG H R C +A +
Sbjct: 21 DCPTKGPAKCYNCGGEGHLSRDCTEPMKDNKSCYKCGQPGHISRDCPQAGAAGGGQAGTE 80
Query: 225 CFICKKGGHRAKDCPDKHKSGFQN-------------AQVCLKCGDSGHDMFSCRNSYSL 271
C+ C + GH A+ CP KSGF + C CG GH C N
Sbjct: 81 CYKCGEKGHIARSCP---KSGFGGNSYGGNSGYGGGAGKTCYSCGGYGHMSRECVNG--- 134
Query: 272 DDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
++CY C GH +A GE C++C Q GH
Sbjct: 135 -----MKCYNCGESGHYSRDCPKEAAGGEKICYKCQQGGH 169
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 26/147 (17%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA----QDCFICKKGGHRAKD 237
CY+CG GH A +C K C+ CG H R C++ + C+ C + GH ++D
Sbjct: 8 ACYSCGNAGHQARDC--PTKGPAKCYNCGGEGHLSRDCTEPMKDNKSCYKCGQPGHISRD 65
Query: 238 CPDKHKSGFQNAQV-CLKCGDSGHDMFSCRNS----------YSLDDLKEVQCYICRCFG 286
CP +G A C KCG+ GH SC S CY C +G
Sbjct: 66 CPQAGAAGGGQAGTECYKCGEKGHIARSCPKSGFGGNSYGGNSGYGGGAGKTCYSCGGYG 125
Query: 287 HLC--CVNISDAVPGEVSCFRCGQLGH 311
H+ CVN + C+ CG+ GH
Sbjct: 126 HMSRECVN-------GMKCYNCGESGH 145
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 17/99 (17%)
Query: 183 CYNCGEEGHMAVNCRSA--------------VKRKKPCFVCGSLEHGVRQCSKAQDCFIC 228
CY CGE+GH+A +C + K C+ CG H R+C C+ C
Sbjct: 81 CYKCGEKGHIARSCPKSGFGGNSYGGNSGYGGGAGKTCYSCGGYGHMSRECVNGMKCYNC 140
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
+ GH ++DCP + G ++C KC GH C N
Sbjct: 141 GESGHYSRDCPKEAAGG---EKICYKCQQGGHVQAQCPN 176
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGHRA 235
+TCY+CG GHM+ C + +K C+ CG H R C K C+ C++GGH
Sbjct: 116 KTCYSCGGYGHMSRECVNGMK----CYNCGESGHYSRDCPKEAAGGEKICYKCQQGGHVQ 171
Query: 236 KDCPD 240
CP+
Sbjct: 172 AQCPN 176
>gi|125549296|gb|EAY95118.1| hypothetical protein OsI_16935 [Oryza sativa Indica Group]
Length = 403
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 11/115 (9%)
Query: 206 CFVCGSLEHGVRQCS------KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
CF+C + +H + C K + C +C++ GH K+CPDK+ + + C CG+SG
Sbjct: 72 CFICKATDHVAKVCPEKSLWEKNKICLLCRQRGHSLKNCPDKNDENLK--KFCYNCGESG 129
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
H + C K C++C+ GHL C N P C CG++ H
Sbjct: 130 HSLSKCPKPIENGGTKFASCFVCKQQGHLSKNCPENKHGIYPKGGCCKICGEVTH 184
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 181 QTCYNCGEEGHMAVNC--RSAVKRKKPCFVCGSLEHGVRQC--------SKAQDCFICKK 230
+ C C + GH NC ++ KK C+ CG H + +C +K CF+CK+
Sbjct: 95 KICLLCRQRGHSLKNCPDKNDENLKKFCYNCGESGHSLSKCPKPIENGGTKFASCFVCKQ 154
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
GH +K+CP+ + C CG+ H C N
Sbjct: 155 QGHLSKNCPENKHGIYPKGGCCKICGEVTHLAKHCPN 191
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 183 CYNCGEEGHMAVNCRSAVK----RKKPCFVCGSLEHGVRQCSKAQD--------CFICKK 230
CYNCGE GH C ++ + CFVC H + C + + C IC +
Sbjct: 122 CYNCGESGHSLSKCPKPIENGGTKFASCFVCKQQGHLSKNCPENKHGIYPKGGCCKICGE 181
Query: 231 GGHRAKDCPDK 241
H AK CP++
Sbjct: 182 VTHLAKHCPNR 192
>gi|45382487|ref|NP_990238.1| cellular nucleic acid-binding protein [Gallus gallus]
gi|6225175|sp|O42395.1|CNBP_CHICK RecName: Full=Cellular nucleic acid-binding protein; Short=CNBP;
AltName: Full=Zinc finger protein 9
gi|2232217|gb|AAB62243.1| cellular nucleic acid binding protein [Gallus gallus]
Length = 172
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 65/134 (48%), Gaps = 25/134 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ K C+ CG H + C + Q C+ C K GH A+D
Sbjct: 48 CYRCGESGHLAKDCD--LQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 105
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 106 CD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSK 147
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 148 TSEVNCYRCGESGH 161
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 18/111 (16%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKD 237
+ CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KD
Sbjct: 67 KACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKD 126
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C C +CG++GH +C + EV CY C GHL
Sbjct: 127 C---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 162
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 84 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 140
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 141 VAINCS-------KTSEVNCYRCGESGH 161
>gi|281200716|gb|EFA74934.1| hypothetical protein PPL_11968 [Polysphondylium pallidum PN500]
Length = 254
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 65/152 (42%), Gaps = 25/152 (16%)
Query: 177 DRGWQTCYNCGEEGHMAVNC---RSAVKRKKPCFVCGSLEHGVRQCSKAQD--------- 224
DRG C+NCG+ GH++ C + C+ CG+ H R+C +
Sbjct: 59 DRGGNNCFNCGKPGHISRECPDGAAGAGNTGSCYNCGNTGHISRECPNKSERNDRSGGDR 118
Query: 225 -CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD--DLKEVQCYI 281
CF C K GH ++DC S C KCG +GH C S D + +C+
Sbjct: 119 ACFNCGKTGHMSRDCTQGGSS-----AGCFKCGKTGHISRDCTESGGSDRGHGGDKKCFK 173
Query: 282 CRCFGHLC--CVNISDAVPGEVSCFRCGQLGH 311
C GH+ C N P SCF CG+ GH
Sbjct: 174 CNQTGHISRDCPNSDSQGP---SCFNCGESGH 202
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 25/133 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C+ CG+ GHM+ C G + G +CF C K GH +++CPD
Sbjct: 39 CFKCGKPGHMSRECTQG----------GGSDRG------GNNCFNCGKPGHISRECPDG- 81
Query: 243 KSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLK--EVQCYICRCFGHLCCVNISDAVPGE 300
+G N C CG++GH C N +D + C+ C GH+ D G
Sbjct: 82 AAGAGNTGSCYNCGNTGHISRECPNKSERNDRSGGDRACFNCGKTGHM----SRDCTQGG 137
Query: 301 VS--CFRCGQLGH 311
S CF+CG+ GH
Sbjct: 138 SSAGCFKCGKTGH 150
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 15/100 (15%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA----------QDCFIC 228
G + C+NCG+ GHM+ +C CF CG H R C+++ + CF C
Sbjct: 116 GDRACFNCGKTGHMSRDCTQGGSSAG-CFKCGKTGHISRDCTESGGSDRGHGGDKKCFKC 174
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
+ GH ++DCP+ G C CG+SGH C S
Sbjct: 175 NQTGHISRDCPNSDSQG----PSCFNCGESGHKSRECTKS 210
>gi|222629337|gb|EEE61469.1| hypothetical protein OsJ_15732 [Oryza sativa Japonica Group]
Length = 403
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 11/115 (9%)
Query: 206 CFVCGSLEHGVRQCS------KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
CF+C + +H + C K + C +C++ GH K+CPDK+ + + C CG+SG
Sbjct: 72 CFICKAADHVAKVCPEKSLWEKNKICLLCRQRGHSLKNCPDKNDENLK--KFCYNCGESG 129
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
H + C K C++C+ GHL C N P C CG++ H
Sbjct: 130 HSLSKCPKPIENGGTKFASCFVCKQQGHLSKNCPENKHGIYPKGGCCKICGEVTH 184
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 181 QTCYNCGEEGHMAVNC--RSAVKRKKPCFVCGSLEHGVRQC--------SKAQDCFICKK 230
+ C C + GH NC ++ KK C+ CG H + +C +K CF+CK+
Sbjct: 95 KICLLCRQRGHSLKNCPDKNDENLKKFCYNCGESGHSLSKCPKPIENGGTKFASCFVCKQ 154
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
GH +K+CP+ + C CG+ H C N
Sbjct: 155 QGHLSKNCPENKHGIYPKGGCCKICGEVTHLAKHCPN 191
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 183 CYNCGEEGHMAVNCRSAVK----RKKPCFVCGSLEHGVRQCSKAQD--------CFICKK 230
CYNCGE GH C ++ + CFVC H + C + + C IC +
Sbjct: 122 CYNCGESGHSLSKCPKPIENGGTKFASCFVCKQQGHLSKNCPENKHGIYPKGGCCKICGE 181
Query: 231 GGHRAKDCPDK 241
H AK CP++
Sbjct: 182 VTHLAKHCPNR 192
>gi|198428174|ref|XP_002131234.1| PREDICTED: similar to universal minicircle sequence binding protein
(UMSBP), putative isoform 2 [Ciona intestinalis]
Length = 310
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 71/169 (42%), Gaps = 49/169 (28%)
Query: 178 RGWQTCYNCGEEGHMAVNCRS----AVKR---KKP--------CFVCGSLEHGVRQCSKA 222
R CY CG GH A C + ++R ++P CF CG H R C A
Sbjct: 107 RDADVCYKCGTPGHFARECPNDAADGIQRNEDRRPMGRRNNDYCFRCGQPGHMARDCLSA 166
Query: 223 QD------------CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC----- 265
++ C+ C K GH A+DCP+ + C KCG +GH C
Sbjct: 167 ENGRSRTGATNINTCYNCYKEGHLARDCPEDN--------ACYKCGKAGHLARKCPEDAD 218
Query: 266 RNSYSLDDLKEV---QCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
RN + + +E QCY+C+ GH+ A E +C+RC GH
Sbjct: 219 RNGDARLNRREAGTKQCYLCQNVGHI------QANCPEATCYRCHGEGH 261
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 57/145 (39%), Gaps = 29/145 (20%)
Query: 183 CYNCGEEGHMAVNC--------RSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHR 234
C+ CG+ GHMA +C R+ C+ C H R C + C+ C K GH
Sbjct: 150 CFRCGQPGHMARDCLSAENGRSRTGATNINTCYNCYKEGHLARDCPEDNACYKCGKAGHL 209
Query: 235 AKDCP-DKHKSG-------FQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFG 286
A+ CP D ++G + C C + GH +C E CY C G
Sbjct: 210 ARKCPEDADRNGDARLNRREAGTKQCYLCQNVGHIQANC---------PEATCYRCHGEG 260
Query: 287 HLCCVNISDAVPGEVSCFRCGQLGH 311
H+ D G C+ C + GH
Sbjct: 261 HI----ARDCPNGNEECYNCRRPGH 281
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 55/137 (40%), Gaps = 37/137 (27%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD----------------C 225
TCYNC +EGH+A +C C+ CG H R+C + D C
Sbjct: 180 TCYNCYKEGHLARDC----PEDNACYKCGKAGHLARKCPEDADRNGDARLNRREAGTKQC 235
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCF 285
++C+ GH +CP+ C +C GH C N +CY CR
Sbjct: 236 YLCQNVGHIQANCPEA---------TCYRCHGEGHIARDCPNG-------NEECYNCRRP 279
Query: 286 GHLCCVNISDAVPGEVS 302
GH + + PGE+S
Sbjct: 280 GHK-ARDCDEPRPGELS 295
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA-QDCFICKKGGHRAKD 237
G + CY C GH+ NC A C+ C H R C ++C+ C++ GH+A+D
Sbjct: 231 GTKQCYLCQNVGHIQANCPEAT-----CYRCHGEGHIARDCPNGNEECYNCRRPGHKARD 285
Query: 238 C 238
C
Sbjct: 286 C 286
>gi|217073290|gb|ACJ85004.1| unknown [Medicago truncatula]
Length = 262
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 206 CFVCGSLEHGVRQCSKAQD------CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
CF+C L+H + C++ + C C++ GHRA++CPD ++ + C CGD+G
Sbjct: 69 CFICKGLDHIAKFCTQKAEWEKNKICVRCRRRGHRAQNCPDGGSK--EDFKYCYNCGDNG 126
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
H + +C + QC++C+ GHL C N P C CG + H
Sbjct: 127 HSLANCPHPLQEGGTMFAQCFVCKEQGHLSKNCPKNAHGIYPKGGCCKICGGVTH 181
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 16/108 (14%)
Query: 159 DNIVLRKLLRGPRYFDPPDRG----WQTCYNCGEEGHMAVNCRSAVKRK----KPCFVCG 210
+ I +R RG R + PD G ++ CYNCG+ GH NC ++ CFVC
Sbjct: 91 NKICVRCRRRGHRAQNCPDGGSKEDFKYCYNCGDNGHSLANCPHPLQEGGTMFAQCFVCK 150
Query: 211 SLEHGVRQCSKAQD--------CFICKKGGHRAKDCPDKHKSGFQNAQ 250
H + C K C IC H A+DCPDK ++GF + +
Sbjct: 151 EQGHLSKNCPKNAHGIYPKGGCCKICGGVTHLARDCPDKGQNGFGDGR 198
>gi|255082406|ref|XP_002504189.1| predicted protein [Micromonas sp. RCC299]
gi|226519457|gb|ACO65447.1| predicted protein [Micromonas sp. RCC299]
Length = 938
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 51/120 (42%), Gaps = 26/120 (21%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA------QDCFICKKGGHR 234
+TC+ CG GH+A C +A ++ C VCG H R C + + C +C + GH
Sbjct: 644 RTCHKCGMPGHIARECPNAPGEQRTCHVCGEGGHIARDCPQGPSRPEERACHVCGESGHL 703
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVN 292
A+DCP C CG GH C E +C C GH+ CVN
Sbjct: 704 ARDCPQS---------TCHNCGKPGHRAAEC---------PEARCRRCGEKGHMARDCVN 745
>gi|189303765|gb|ACD85807.1| cellular nucleic acid-binding protein [Ctenopharyngodon idella]
Length = 163
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 65/142 (45%), Gaps = 25/142 (17%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP---------CFVCGSLEHGVRQCSKAQD-CFICKKGG 232
C CG GH NC +A + + C+ CG H R C + +D C+ C + G
Sbjct: 8 CSGCGRSGHWIKNCPNAGRGRGRGRGRGKDLFCYRCGEQGHIARDCEQTEDACYNCHRSG 67
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVN 292
H ++DC + K + Q C CG +GH C D E +CY C FGH+
Sbjct: 68 HISRDCKEPKK---EREQCCYNCGKAGHVARDC------DHANEQKCYSCGGFGHI---- 114
Query: 293 ISDAVPGEVSCFRCGQLGHTGL 314
+ +V C+RCG++GH +
Sbjct: 115 --QKLCDKVKCYRCGEIGHVAV 134
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 51/110 (46%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNC GH++ +C+ K R++ C+ CG H R C A Q C+ C GH K C
Sbjct: 59 ACYNCHRSGHISRDCKEPKKEREQCCYNCGKAGHVARDCDHANEQKCYSCGGFGHIQKLC 118
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
DK K C +CG+ GH C + EV CY C GHL
Sbjct: 119 -DKVK--------CYRCGEIGHVAVQCSKA------TEVNCYNCGKTGHL 153
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 18/83 (21%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKR----------------KKPCFVCGSLEHGVR 217
+P Q CYNCG+ GH+A +C A ++ K C+ CG + H
Sbjct: 75 EPKKEREQCCYNCGKAGHVARDCDHANEQKCYSCGGFGHIQKLCDKVKCYRCGEIGHVAV 134
Query: 218 QCSKAQD--CFICKKGGHRAKDC 238
QCSKA + C+ C K GH A++C
Sbjct: 135 QCSKATEVNCYNCGKTGHLAREC 157
>gi|354622939|ref|NP_001133217.2| zinc finger protein 9 [Salmo salar]
gi|221220712|gb|ACM09017.1| Cellular nucleic acid-binding protein [Salmo salar]
Length = 167
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 28/145 (19%)
Query: 183 CYNCGEEGHMAVNCRSA------------VKRKKPCFVCGSLEHGVRQCSKAQD-CFICK 229
C+ CG GH NC A + C+ CG H R C + +D C+ C
Sbjct: 9 CFRCGRPGHWIKNCPEAGSGGRGRGRGRGRGKDLFCYRCGEQGHIARDCEQTEDACYNCH 68
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC 289
+ GH ++DC + K + Q C CG +GH C D E +CY C FGH+
Sbjct: 69 RSGHISRDCKEPKK---EREQCCYSCGKAGHVARDC------DHANEQKCYSCGGFGHI- 118
Query: 290 CVNISDAVPGEVSCFRCGQLGHTGL 314
+ +V C+RCG++GH +
Sbjct: 119 -----QKLCDKVKCYRCGEIGHVAV 138
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 61/134 (45%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE+GH+A +C + + C+ C H R C + Q C+ C K GH A+D
Sbjct: 44 CYRCGEQGHIARDCE---QTEDACYNCHRSGHISRDCKEPKKEREQCCYSCGKAGHVARD 100
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C N Q C CG GH C +V+CY C GH V + +
Sbjct: 101 CD------HANEQKCYSCGGFGHIQKLC---------DKVKCYRCGEIGH---VAVQCSK 142
Query: 298 PGEVSCFRCGQLGH 311
EV+C++CG GH
Sbjct: 143 ASEVNCYKCGNTGH 156
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 51/110 (46%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNC GH++ +C+ K R++ C+ CG H R C A Q C+ C GH K C
Sbjct: 63 ACYNCHRSGHISRDCKEPKKEREQCCYSCGKAGHVARDCDHANEQKCYSCGGFGHIQKLC 122
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
DK K C +CG+ GH C + EV CY C GHL
Sbjct: 123 -DKVK--------CYRCGEIGHVAVQCSKA------SEVNCYKCGNTGHL 157
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CY+CG+ GH+A +C A ++K C+ CG H + C K + C+ C + GH
Sbjct: 79 EPKKEREQCCYSCGKAGHVARDCDHANEQK--CYSCGGFGHIQKLCDKVK-CYRCGEIGH 135
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
A C K+ N C KCG++GH
Sbjct: 136 VAVQCS---KASEVN---CYKCGNTGH 156
>gi|71747588|ref|XP_822849.1| universal minicircle sequence binding protein (UMSBP) [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
gi|70832517|gb|EAN78021.1| universal minicircle sequence binding protein (UMSBP), putative
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|261332660|emb|CBH15655.1| predicted zinc finger protein [Trypanosoma brucei gambiense DAL972]
Length = 140
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 66/136 (48%), Gaps = 19/136 (13%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
+TCYNCG+ GHM+ C +A G++ G + C+ C + H ++DCP+
Sbjct: 11 RTCYNCGQPGHMSRECPNARSG-------GNMGGG-------RSCYNCGQPDHISRDCPN 56
Query: 241 KHKSG-FQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQ-CYICRCFGHLC--CVNI-SD 295
G + C CG GH C N+ S ++ + CY C+ GH+ C N +D
Sbjct: 57 ARTGGNMGGGRSCYNCGRPGHISRDCPNARSGGNMGGGRACYHCQQEGHIARECPNAPAD 116
Query: 296 AVPGEVSCFRCGQLGH 311
A G +CF CGQ GH
Sbjct: 117 AAAGGRACFNCGQPGH 132
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 179 GWQTCYNCGEEGHMAVNCRSA-----VKRKKPCFVCGSLEHGVRQCSKAQD--------- 224
G ++CYNCG+ H++ +C +A + + C+ CG H R C A+
Sbjct: 37 GGRSCYNCGQPDHISRDCPNARTGGNMGGGRSCYNCGRPGHISRDCPNARSGGNMGGGRA 96
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
C+ C++ GH A++CP+ + C CG GH +C
Sbjct: 97 CYHCQQEGHIARECPNAPADAAAGGRACFNCGQPGHLSRAC 137
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 13/76 (17%)
Query: 179 GWQTCYNCGEEGHMAVNCRSA-----VKRKKPCFVCGSLEHGVRQCSKA--------QDC 225
G ++CYNCG GH++ +C +A + + C+ C H R+C A + C
Sbjct: 65 GGRSCYNCGRPGHISRDCPNARSGGNMGGGRACYHCQQEGHIARECPNAPADAAAGGRAC 124
Query: 226 FICKKGGHRAKDCPDK 241
F C + GH ++ CP K
Sbjct: 125 FNCGQPGHLSRACPVK 140
>gi|197632621|gb|ACH71034.1| zinc finger protein 9-1 [Salmo salar]
Length = 165
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 28/145 (19%)
Query: 183 CYNCGEEGHMAVNCRSA------------VKRKKPCFVCGSLEHGVRQCSKAQD-CFICK 229
C+ CG GH NC A + C+ CG H R C + +D C+ C
Sbjct: 7 CFRCGRPGHWIKNCPEAGSGGRGRGRGRGRGKDLFCYRCGEQGHIARDCEQTEDACYNCH 66
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC 289
+ GH ++DC + K + Q C CG +GH C D E +CY C FGH+
Sbjct: 67 RSGHISRDCKEPKK---EREQCCYSCGKAGHVARDC------DHANEQKCYSCGGFGHI- 116
Query: 290 CVNISDAVPGEVSCFRCGQLGHTGL 314
+ +V C+RCG++GH +
Sbjct: 117 -----QKLCDKVKCYRCGEIGHVAV 136
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 61/134 (45%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE+GH+A +C + + C+ C H R C + Q C+ C K GH A+D
Sbjct: 42 CYRCGEQGHIARDCE---QTEDACYNCHRSGHISRDCKEPKKEREQCCYSCGKAGHVARD 98
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C N Q C CG GH C +V+CY C GH V + +
Sbjct: 99 CD------HANEQKCYSCGGFGHIQKLC---------DKVKCYRCGEIGH---VAVQCSK 140
Query: 298 PGEVSCFRCGQLGH 311
EV+C++CG GH
Sbjct: 141 ASEVNCYKCGNTGH 154
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 51/110 (46%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNC GH++ +C+ K R++ C+ CG H R C A Q C+ C GH K C
Sbjct: 61 ACYNCHRSGHISRDCKEPKKEREQCCYSCGKAGHVARDCDHANEQKCYSCGGFGHIQKLC 120
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
DK K C +CG+ GH C + EV CY C GHL
Sbjct: 121 -DKVK--------CYRCGEIGHVAVQCSKA------SEVNCYKCGNTGHL 155
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CY+CG+ GH+A +C A ++K C+ CG H + C K + C+ C + GH
Sbjct: 77 EPKKEREQCCYSCGKAGHVARDCDHANEQK--CYSCGGFGHIQKLCDKVK-CYRCGEIGH 133
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
A C K+ N C KCG++GH
Sbjct: 134 VAVQCS---KASEVN---CYKCGNTGH 154
>gi|242076730|ref|XP_002448301.1| hypothetical protein SORBIDRAFT_06g024880 [Sorghum bicolor]
gi|241939484|gb|EES12629.1| hypothetical protein SORBIDRAFT_06g024880 [Sorghum bicolor]
Length = 275
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 206 CFVCGSLEHGVRQCS------KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
CF+C S +H + C K + C +C++ GH K+CPDK + + + C CG+SG
Sbjct: 70 CFICKSTDHVAKACPEKALWDKNKICLLCRERGHSLKNCPDKSEGNLK--KFCYNCGESG 127
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
H + C C+IC+ GHL C N P C CG++ H
Sbjct: 128 HSLSKCPKPIENGGTNFASCFICKQQGHLSKNCPENKHGIYPKGGCCKECGEVTH 182
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 181 QTCYNCGEEGHMAVNC--RSAVKRKKPCFVCGSLEHGVRQCSKA--------QDCFICKK 230
+ C C E GH NC +S KK C+ CG H + +C K CFICK+
Sbjct: 93 KICLLCRERGHSLKNCPDKSEGNLKKFCYNCGESGHSLSKCPKPIENGGTNFASCFICKQ 152
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
GH +K+CP+ + C +CG+ H C N D
Sbjct: 153 QGHLSKNCPENKHGIYPKGGCCKECGEVTHLARHCPNKGKQD 194
>gi|440632924|gb|ELR02843.1| hypothetical protein GMDG_05776 [Geomyces destructans 20631-21]
Length = 525
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 16/100 (16%)
Query: 183 CYNCGEEGHMAVNC---RSAVKRKKPCFVCGSLEHGVRQCSKAQ-------DCFICKKGG 232
C+NCGE+GHM +C R+ + C+ CG + H C Q C +C+ G
Sbjct: 45 CFNCGEQGHMKGDCPNPRAGGQLAGECYNCGEVGHNKADCPNPQVPREFTGTCRVCEAVG 104
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
HRA DCP ++C CGD GH + +C N +D
Sbjct: 105 HRASDCPT------AGPKLCKNCGDEGHTITACTNPRKID 138
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 59/143 (41%), Gaps = 19/143 (13%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKG 231
DR TC+NC E GH +C + + C C H ++C++ + +C C +
Sbjct: 288 DRASVTCFNCNETGHRMRDCHKPREDRFACRNCKQSGHSSKECTEPRSAEGVECKNCNEM 347
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC-- 289
GH ++DCP +G C CG GH C + + C C GH+
Sbjct: 348 GHFSRDCP----TGGGGGGACHNCGQEGHRSKDC------TEPRVPTCRNCDEKGHISKE 397
Query: 290 CVNISDAVPGEVSCFRCGQLGHT 312
C D + C C Q+GHT
Sbjct: 398 CPKPRDY--SRIQCSNCQQMGHT 418
>gi|431913718|gb|ELK15208.1| Cellular nucleic acid-binding protein [Pteropus alecto]
Length = 189
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 69/148 (46%), Gaps = 34/148 (22%)
Query: 177 DRGWQ--------TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQ 223
DRG+Q CY CGE GH+A +C ++ C+ CG H + C + Q
Sbjct: 52 DRGFQFVSSSLPDICYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPKREREQ 108
Query: 224 DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C K GH A+DC + Q C CG+ GH D +V+CY C
Sbjct: 109 CCYNCGKPGHLARDCD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCG 153
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGH 311
GH V I+ + EV+C+RCG+ GH
Sbjct: 154 ETGH---VAINCSKTSEVNCYRCGESGH 178
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 85 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 144
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 145 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 179
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 63/158 (39%), Gaps = 41/158 (25%)
Query: 183 CYNCGEEGHMAVNCRSA-----------------------VKRKKP--CFVCGSLEHGVR 217
C+ CG GH A C + V P C+ CG H +
Sbjct: 18 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 77
Query: 218 QCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKE 276
C +D C+ C +GGH AKDC + + + Q C CG GH C D E
Sbjct: 78 DCDLQEDACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADE 128
Query: 277 VQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
+CY C FGH+ D +V C+RCG+ GH +
Sbjct: 129 QKCYSCGEFGHI----QKDCT--KVKCYRCGETGHVAI 160
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 53/134 (39%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKS----------------GFQNAQ-----VCLKCGDSGH 260
+ +CF C + GH A++CP GFQ +C +CG+SGH
Sbjct: 15 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 74
Query: 261 DMFSCRNSYSLDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----- 302
C DL+E CY C GH+ CC N PG ++
Sbjct: 75 LAKDC-------DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDH 125
Query: 303 -----CFRCGQLGH 311
C+ CG+ GH
Sbjct: 126 ADEQKCYSCGEFGH 139
>gi|348570490|ref|XP_003471030.1| PREDICTED: cellular nucleic acid-binding protein-like [Cavia
porcellus]
Length = 169
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 66/159 (41%), Gaps = 36/159 (22%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP------------------CFVCGSLEHGVRQCSKAQD 224
C+ CG GH A C R++ C+ CG+ H + C
Sbjct: 6 CFKCGRNGHWARECPKGGARQRGFRSSDSGPQCSSASQSDICYRCGAAGHYAKNCDLQDI 65
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH-----------DMFSCRNSYSLD- 272
C+ C K GH AKDCP+ + Q Q C C GH ++C S +
Sbjct: 66 CYSCGKSGHIAKDCPEPKQ---QKEQCCYTCSRPGHLARDCDQRKVQKCYTCGESGHIQK 122
Query: 273 DLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
D +V+CY C GH+ +S EV+C+RCG+ GH
Sbjct: 123 DCAQVRCYRCGETGHM---AMSCNKASEVNCYRCGEAGH 158
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 55/110 (50%), Gaps = 20/110 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPC-FVCGSLEHGVRQC--SKAQDCFICKKGGHRAKDCP 239
CY+CG+ GH+A +C ++K+ C + C H R C K Q C+ C + GH KDC
Sbjct: 66 CYSCGKSGHIAKDCPEPKQQKEQCCYTCSRPGHLARDCDQRKVQKCYTCGESGHIQKDC- 124
Query: 240 DKHKSGFQNAQV-CLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
AQV C +CG++GH SC + EV CY C GH+
Sbjct: 125 ---------AQVRCYRCGETGHMAMSC------NKASEVNCYRCGEAGHI 159
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--CFICKKG 231
D R Q CY CGE GH+ +C + V+ C+ CG H C+KA + C+ C +
Sbjct: 102 DCDQRKVQKCYTCGESGHIQKDC-AQVR----CYRCGETGHMAMSCNKASEVNCYRCGEA 156
Query: 232 GHRAKDC 238
GH A++C
Sbjct: 157 GHIAREC 163
>gi|114689169|ref|XP_529043.2| PREDICTED: zinc finger CCHC domain-containing protein 13 [Pan
troglodytes]
gi|397507945|ref|XP_003824438.1| PREDICTED: zinc finger CCHC domain-containing protein 13-like [Pan
paniscus]
Length = 170
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 61/124 (49%), Gaps = 25/124 (20%)
Query: 183 CYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQC--SKAQDCFICKKGGHRAKDCP 239
CYNCG GH+A +C+ + R++ C+ CG L H R C K Q C+ C K GH KDC
Sbjct: 67 CYNCGRSGHIAKDCKEPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSCGKLGHIQKDC- 125
Query: 240 DKHKSGFQNAQV-CLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVP 298
AQV C +CG+ GH +C + + QCY C GHL + P
Sbjct: 126 ---------AQVKCYRCGEIGHVAINCSKT------RPGQCYRCGKSGHL-----AKECP 165
Query: 299 GEVS 302
EV+
Sbjct: 166 SEVT 169
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 60/135 (44%), Gaps = 26/135 (19%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-----KAQDCFICKKGGHRAK 236
TCY CGE G A N V C+ CG H + C + Q C+ C + GH A+
Sbjct: 46 TCYCCGESGRNAKN---RVLLGNICYNCGRSGHIAKDCKEPKRERRQHCYTCGRLGHLAR 102
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDA 296
DC Q Q C CG GH D +V+CY C GH+ +N S
Sbjct: 103 DCDR------QKEQKCYSCGKLGHIQ---------KDCAQVKCYRCGEIGHV-AINCSKT 146
Query: 297 VPGEVSCFRCGQLGH 311
PG+ C+RCG+ GH
Sbjct: 147 RPGQ--CYRCGKSGH 159
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ--DCFICKKGGHRAKDC 238
Q CY+CG+ GH+ +C + VK C+ CG + H CSK + C+ C K GH AK+C
Sbjct: 110 QKCYSCGKLGHIQKDC-AQVK----CYRCGEIGHVAINCSKTRPGQCYRCGKSGHLAKEC 164
Query: 239 PD 240
P
Sbjct: 165 PS 166
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CY CG GH+A +C ++++ C+ CG L H + C++ + C+ C + GH
Sbjct: 82 EPKRERRQHCYTCGRLGHLARDCDR--QKEQKCYSCGKLGHIQKDCAQVK-CYRCGEIGH 138
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
A +C K + G C +CG SGH
Sbjct: 139 VAINC-SKTRPG-----QCYRCGKSGH 159
>gi|336269017|ref|XP_003349270.1| hypothetical protein SMAC_05554 [Sordaria macrospora k-hell]
gi|380089843|emb|CCC12376.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 184
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 72/161 (44%), Gaps = 31/161 (19%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKAQ--------- 223
D P++G CYNCG EGHM+ +C K + C+ CG H R CS++
Sbjct: 24 DCPNKGAAKCYNCGNEGHMSRDCPEGPKDNARTCYRCGQTGHISRDCSQSGGQGGQSSGA 83
Query: 224 DCFICKKGGHRAKDCPD---KHKSGFQN----------AQVCLKCGDSGHDMFSCRNSYS 270
+C+ C + GH A++C + GFQN A+ C CG GH S
Sbjct: 84 ECYKCGEVGHIARNCSKGGAAYGGGFQNSGYGGGFGGPAKTCYSCGGIGH--------MS 135
Query: 271 LDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
D + +CY C GH D+ GE C++C Q GH
Sbjct: 136 RDCVNGSKCYNCGESGHFSRDCPKDSGSGEKICYKCQQPGH 176
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 41/100 (41%), Gaps = 20/100 (20%)
Query: 183 CYNCGEEGHMAVNCRSA-----------------VKRKKPCFVCGSLEHGVRQCSKAQDC 225
CY CGE GH+A NC K C+ CG + H R C C
Sbjct: 85 CYKCGEVGHIARNCSKGGAAYGGGFQNSGYGGGFGGPAKTCYSCGGIGHMSRDCVNGSKC 144
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ C + GH ++DCP SG ++C KC GH C
Sbjct: 145 YNCGESGHFSRDCPKDSGSG---EKICYKCQQPGHVQSQC 181
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 22/132 (16%)
Query: 199 AVKRKKPCFVCGSLEHGVRQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCG 256
A + + CF CG H R C A C+ C GH ++DCP+ K NA+ C +CG
Sbjct: 5 AAPQARACFTCGQTTHQARDCPNKGAAKCYNCGNEGHMSRDCPEGPK---DNARTCYRCG 61
Query: 257 DSGHDMFSC-RNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVPGEV------------ 301
+GH C ++ +CY C GH+ C A G
Sbjct: 62 QTGHISRDCSQSGGQGGQSSGAECYKCGEVGHIARNCSKGGAAYGGGFQNSGYGGGFGGP 121
Query: 302 --SCFRCGQLGH 311
+C+ CG +GH
Sbjct: 122 AKTCYSCGGIGH 133
Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 66/152 (43%), Gaps = 30/152 (19%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-----AQDCFICKKGGHRA 235
+ C+ CG+ H A +C + K C+ CG+ H R C + A+ C+ C + GH +
Sbjct: 10 RACFTCGQTTHQARDCPN--KGAAKCYNCGNEGHMSRDCPEGPKDNARTCYRCGQTGHIS 67
Query: 236 KDCPDKHKSGFQNAQV-CLKCGDSGHDMFSC-----------RNSYSLDDLKEVQ--CYI 281
+DC G Q++ C KCG+ GH +C +NS CY
Sbjct: 68 RDCSQSGGQGGQSSGAECYKCGEVGHIARNCSKGGAAYGGGFQNSGYGGGFGGPAKTCYS 127
Query: 282 CRCFGHLC--CVNISDAVPGEVSCFRCGQLGH 311
C GH+ CVN S C+ CG+ GH
Sbjct: 128 CGGIGHMSRDCVNGSK-------CYNCGESGH 152
>gi|358395603|gb|EHK44990.1| hypothetical protein TRIATDRAFT_166172, partial [Trichoderma
atroviride IMI 206040]
Length = 404
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 58/138 (42%), Gaps = 18/138 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHRAK 236
+CYNCG EGH +C K C CG H + +C + +C C K GH AK
Sbjct: 265 SCYNCGNEGHRVRDCPEPRVDKFACKNCGKSGHKIAECPEPPNMDNVECRKCNKTGHFAK 324
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNIS 294
DCPD ++ C CG GH C ++D V C C GH C
Sbjct: 325 DCPDG------GSRACRNCGQEGHISKDCDQPRNMD---LVTCRNCEETGHYSKECPKPR 375
Query: 295 DAVPGEVSCFRCGQLGHT 312
D +V C C + GHT
Sbjct: 376 DW--SKVQCTNCEEYGHT 391
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 40/99 (40%), Gaps = 27/99 (27%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
D + G C+ CGEEGH C +A +AQ C CKK GH
Sbjct: 37 DAGEYGNDKCFGCGEEGHRRAECPNA---------------------EAQTCRYCKKEGH 75
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
KDCPDK C CG+ GH C N+ ++
Sbjct: 76 MVKDCPDKP------PMTCGNCGEEGHFRKDCENARKVN 108
>gi|238490081|ref|XP_002376278.1| zinc knuckle domain protein (Byr3), putative [Aspergillus flavus
NRRL3357]
gi|83770972|dbj|BAE61105.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220698666|gb|EED55006.1| zinc knuckle domain protein (Byr3), putative [Aspergillus flavus
NRRL3357]
gi|391871140|gb|EIT80305.1| E3 ubiquitin ligase interacting with arginine methyltransferase
[Aspergillus oryzae 3.042]
Length = 190
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 179 GWQTCYNCGEEGHMAVNC-------RSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKG 231
G Q CY CG GH+A NC R+ C+ CG H R C+ Q C+ C +
Sbjct: 99 GGQECYKCGHVGHIARNCSQGGYSGDGYGGRQHTCYSCGGHGHMARDCTHGQKCYNCGEV 158
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
GH ++DCP + + +VC KC GH +C N
Sbjct: 159 GHVSRDCPSEAR----GERVCYKCKQPGHVQAACPN 190
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 15/106 (14%)
Query: 217 RQCS---KAQDCFICKKGGHRAKDCPDKHK----SGFQNAQVCLKCGDSGHDMFSCRN-- 267
R+C+ K + C+ C GH ++DCP SG Q C KCG GH +C
Sbjct: 61 RECTVAPKEKPCYRCSGVGHISRDCPQAPSGDGYSGATGGQECYKCGHVGHIARNCSQGG 120
Query: 268 -SYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHT 312
S ++ CY C GH+ D G+ C+ CG++GH
Sbjct: 121 YSGDGYGGRQHTCYSCGGHGHM----ARDCTHGQ-KCYNCGEVGHV 161
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 51/130 (39%), Gaps = 24/130 (18%)
Query: 198 SAVKRKKPCFVCGSLEHGVRQCSKA------------QDCFICKKGGHRAKDCPDKHKSG 245
+ ++KPC+ C + H R C +A Q+C+ C GH A++C SG
Sbjct: 64 TVAPKEKPCYRCSGVGHISRDCPQAPSGDGYSGATGGQECYKCGHVGHIARNCSQGGYSG 123
Query: 246 FQNA---QVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVS 302
C CG GH C + +CY C GH+ + GE
Sbjct: 124 DGYGGRQHTCYSCGGHGHMARDCTHG--------QKCYNCGEVGHV-SRDCPSEARGERV 174
Query: 303 CFRCGQLGHT 312
C++C Q GH
Sbjct: 175 CYKCKQPGHV 184
>gi|260408201|gb|ACX37415.1| vasa [Botryllus schlosseri]
Length = 655
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 181 QTCYNCGEEGHMAVNCR--SAVKRKKPCFVCGSLEHGVRQC------SKAQDCFICKKGG 232
+ C+ CG+EGHM+ C R K CF CG H R+C S+ + CF C + G
Sbjct: 51 RACFKCGQEGHMSRECPEGGGGSRPKGCFKCGEEGHMSRECPSGGGDSRPKGCFKCGEEG 110
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
H +++CP G + C KCG+ GH C N
Sbjct: 111 HMSRECP-TGGGGDSRPKGCFKCGEEGHMSRECPN 144
Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 220 SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQC 279
S ++ CF C + GH +++CP+ G + C KCG+ GH C + D + C
Sbjct: 48 SNSRACFKCGQEGHMSRECPE--GGGGSRPKGCFKCGEEGHMSRECPSGGG--DSRPKGC 103
Query: 280 YICRCFGHLC--CVNISDAVPGEVSCFRCGQLGH 311
+ C GH+ C CF+CG+ GH
Sbjct: 104 FKCGEEGHMSRECPTGGGGDSRPKGCFKCGEEGH 137
>gi|291409840|ref|XP_002721202.1| PREDICTED: cellular nucleic acid binding protein-like isoform 1
[Oryctolagus cuniculus]
Length = 168
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 25/134 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ + C+ CG H + C + Q C+ C K GH A+D
Sbjct: 44 CYRCGESGHLAKDC--DLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 101
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 102 CD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSK 143
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 144 TSEVNCYRCGESGH 157
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 62/149 (41%), Gaps = 32/149 (21%)
Query: 183 CYNCGEEGHMAVNCRSA---------------VKRKKPCFVCGSLEHGVRQCSKAQD--C 225
C+ CG GH A C + + C+ CG H + C +D C
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRDICYRCGESGHLAKDCDLQEDEAC 65
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCF 285
+ C +GGH AKDC + + + Q C CG GH C D E +CY C F
Sbjct: 66 YNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCGEF 116
Query: 286 GHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
GH+ D +V C+RCG+ GH +
Sbjct: 117 GHI----QKDCT--KVKCYRCGETGHVAI 139
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 18/111 (16%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKD 237
+ CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KD
Sbjct: 63 EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKD 122
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C C +CG++GH +C + EV CY C GHL
Sbjct: 123 C---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 158
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 80 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 136
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 137 VAINCS-------KTSEVNCYRCGESGH 157
>gi|70991320|ref|XP_750509.1| zinc knuckle domain protein (Byr3) [Aspergillus fumigatus Af293]
gi|66848141|gb|EAL88471.1| zinc knuckle domain protein (Byr3), putative [Aspergillus fumigatus
Af293]
gi|159130982|gb|EDP56095.1| zinc knuckle domain protein (Byr3), putative [Aspergillus fumigatus
A1163]
Length = 190
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 16/107 (14%)
Query: 173 FDPPDRGWQTCYNCGEEGHMAVNCR------------SAVKRKKPCFVCGSLEHGVRQCS 220
++ G Q CY CG+ GH+A NC R++ C+ CG H R C+
Sbjct: 88 YNGAPSGGQECYKCGQVGHIARNCSQGGNYGGGFGHGGYGGRQQTCYSCGGFGHMARDCT 147
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
Q C+ C GH ++DCP + K +VC KC GH +C N
Sbjct: 148 HGQKCYNCGDVGHVSRDCPTEAK----GERVCYKCKQPGHVQAACPN 190
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 69/166 (41%), Gaps = 42/166 (25%)
Query: 174 DPPDRGWQTCYNCGE---EGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA-------- 222
D P +G TCYNCG +GH++ C A K K C+ CG H R+CS+A
Sbjct: 32 DCPKKGTPTCYNCGATIGQGHVSRECTVAPKEKS-CYRCGVAGHISRECSQAGSGDNYNG 90
Query: 223 -----QDCFICKKGGHRAKDCPDKHKSGFQNA--------QVCLKCGDSGHDMFSCRNSY 269
Q+C+ C + GH A++C G Q C CG GH
Sbjct: 91 APSGGQECYKCGQVGHIARNCSQGGNYGGGFGHGGYGGRQQTCYSCGGFGH--------M 142
Query: 270 SLDDLKEVQCYICRCFGHLCCVNISDAVP----GEVSCFRCGQLGH 311
+ D +CY C GH +S P GE C++C Q GH
Sbjct: 143 ARDCTHGQKCYNCGDVGH-----VSRDCPTEAKGERVCYKCKQPGH 183
>gi|294942030|ref|XP_002783361.1| cellular nucleic acid binding protein, putative [Perkinsus marinus
ATCC 50983]
gi|239895776|gb|EER15157.1| cellular nucleic acid binding protein, putative [Perkinsus marinus
ATCC 50983]
Length = 135
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 170 PRYFDPPDRGW---QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA--QD 224
PR FD R Q CYNCG+ H+A +C +PCF C + H R C A ++
Sbjct: 24 PRQFDDDSRARRRPQNCYNCGQPDHLARDCPKDQSNDRPCFKCQQVGHFARDCPSADTRN 83
Query: 225 CFICKKGGHRAKDCP--------DKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
CF C + GH A++CP + + G + C CG GH +CRNS
Sbjct: 84 CFRCGQSGHLARECPNEENNQDNNNNNRGGGGGRNCFHCGKPGHLARNCRNS 135
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 17/91 (18%)
Query: 181 QTCYNCGEEGHMAVNC-------RSAVKRKKPCFVCGSLEHGVRQCSKAQD----CFICK 229
Q C+ C E GH A NC A +R + C+ CG +H R C K Q CF C+
Sbjct: 8 QACFICNETGHYARNCPRQFDDDSRARRRPQNCYNCGQPDHLARDCPKDQSNDRPCFKCQ 67
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
+ GH A+DCP + + C +CG SGH
Sbjct: 68 QVGHFARDCPSA------DTRNCFRCGQSGH 92
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 220 SKAQDCFICKKGGHRAKDCP---DKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKE 276
+ +Q CFIC + GH A++CP D + Q C CG H C D +
Sbjct: 5 APSQACFICNETGHYARNCPRQFDDDSRARRRPQNCYNCGQPDHLARDC----PKDQSND 60
Query: 277 VQCYICRCFGHLCCVNISDAVPGEV-SCFRCGQLGH 311
C+ C+ GH D + +CFRCGQ GH
Sbjct: 61 RPCFKCQQVGHF----ARDCPSADTRNCFRCGQSGH 92
>gi|229366404|gb|ACQ58182.1| Cellular nucleic acid-binding protein [Anoplopoma fimbria]
Length = 170
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 61/134 (45%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CG++GHMA +C + + C+ C H R C + Q C+IC K GH A+D
Sbjct: 47 CYRCGDQGHMARDCD---QTEDACYNCHRSGHISRDCKEPKKEREQLCYICNKAGHMARD 103
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C G N Q C CG GH C +V+CY C GH V + A
Sbjct: 104 C------GHANNQKCYSCGGFGHIQKLC---------DKVKCYRCGDIGH---VAVHCAK 145
Query: 298 PGEVSCFRCGQLGH 311
E +C+ CG GH
Sbjct: 146 TSETNCYNCGTAGH 159
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 30/147 (20%)
Query: 183 CYNCGEEGHMAVNC--------------RSAVKRKKPCFVCGSLEHGVRQCSKAQD-CFI 227
CY CG GH A +C + C+ CG H R C + +D C+
Sbjct: 10 CYQCGRSGHWAKHCPSSSMGSSGRGRGRGRGRGKDLFCYRCGDQGHMARDCDQTEDACYN 69
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGH 287
C + GH ++DC + K + Q+C C +GH C ++ +CY C FGH
Sbjct: 70 CHRSGHISRDCKEPKK---EREQLCYICNKAGHMARDCGHA------NNQKCYSCGGFGH 120
Query: 288 LCCVNISDAVPGEVSCFRCGQLGHTGL 314
+ + +V C+RCG +GH +
Sbjct: 121 I------QKLCDKVKCYRCGDIGHVAV 141
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CY C + GHMA +C A +K C+ CG H + C K + C+ C GH
Sbjct: 82 EPKKEREQLCYICNKAGHMARDCGHANNQK--CYSCGGFGHIQKLCDKVK-CYRCGDIGH 138
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
A C ++ C CG +GH C N
Sbjct: 139 VAVHCAKTSETN------CYNCGTAGHLARDCTN 166
>gi|19114592|ref|NP_593680.1| zinc finger protein Byr3 [Schizosaccharomyces pombe 972h-]
gi|543908|sp|P36627.1|BYR3_SCHPO RecName: Full=Cellular nucleic acid-binding protein homolog
gi|254734|gb|AAB23116.1| human cellular nucleic acid binding protein (CNBP) homolog
[Schizosaccharomyces pombe]
gi|1204164|emb|CAA93542.1| zinc finger protein Byr3 [Schizosaccharomyces pombe]
Length = 179
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 61/138 (44%), Gaps = 20/138 (14%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD---CFICKKGGHRAKDCP 239
CYNCGE GH A C + C+ C H +C++ Q C+ C GH +DCP
Sbjct: 19 CYNCGENGHQAREC----TKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCP 74
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLK------EVQCYICRCFGHLCCVNI 293
+ Q A+ C KCG GH CR + + + CY C +GH
Sbjct: 75 SS-PNPRQGAE-CYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGH----QA 128
Query: 294 SDAVPGEVSCFRCGQLGH 311
D G V C+ CG++GH
Sbjct: 129 RDCTMG-VKCYSCGKIGH 145
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 15/102 (14%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRS----------AVKRKKPCFVCGSLEHGVRQCSKAQ 223
P R CY CG GH+A +CR+ + C+ CGS H R C+
Sbjct: 76 SPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGV 135
Query: 224 DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
C+ C K GHR+ +C + Q+C KC GH +C
Sbjct: 136 KCYSCGKIGHRSFECQQA-----SDGQLCYKCNQPGHIAVNC 172
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 56/133 (42%), Gaps = 30/133 (22%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKK--PCFVCGSLEHGVRQC--------------SKAQD 224
+TCY CG GH+ +C S+ ++ C+ CG + H R C +
Sbjct: 58 KTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMN 117
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRC 284
C+ C GH+A+DC K C CG GH F C+ + S L CY C
Sbjct: 118 CYACGSYGHQARDCTMGVK--------CYSCGKIGHRSFECQQA-SDGQL----CYKCNQ 164
Query: 285 FGHLCCVNISDAV 297
GH+ VN + V
Sbjct: 165 PGHI-AVNCTSPV 176
>gi|115459840|ref|NP_001053520.1| Os04g0555800 [Oryza sativa Japonica Group]
gi|38345588|emb|CAD41641.2| OSJNBb0012E24.6 [Oryza sativa Japonica Group]
gi|113565091|dbj|BAF15434.1| Os04g0555800 [Oryza sativa Japonica Group]
Length = 277
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 11/115 (9%)
Query: 206 CFVCGSLEHGVRQCS------KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
CF+C + +H + C K + C +C++ GH K+CPDK+ + + C CG+SG
Sbjct: 72 CFICKAADHVAKVCPEKSLWEKNKICLLCRQRGHSLKNCPDKNDENLK--KFCYNCGESG 129
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
H + C K C++C+ GHL C N P C CG++ H
Sbjct: 130 HSLSKCPKPIENGGTKFASCFVCKQQGHLSKNCPENKHGIYPKGGCCKICGEVTH 184
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 181 QTCYNCGEEGHMAVNC--RSAVKRKKPCFVCGSLEHGVRQCSKA--------QDCFICKK 230
+ C C + GH NC ++ KK C+ CG H + +C K CF+CK+
Sbjct: 95 KICLLCRQRGHSLKNCPDKNDENLKKFCYNCGESGHSLSKCPKPIENGGTKFASCFVCKQ 154
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
GH +K+CP+ + C CG+ H C N
Sbjct: 155 QGHLSKNCPENKHGIYPKGGCCKICGEVTHLAKHCPN 191
Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 12/71 (16%)
Query: 183 CYNCGEEGHMAVNCRSAVK----RKKPCFVCGSLEHGVRQCS--------KAQDCFICKK 230
CYNCGE GH C ++ + CFVC H + C K C IC +
Sbjct: 122 CYNCGESGHSLSKCPKPIENGGTKFASCFVCKQQGHLSKNCPENKHGIYPKGGCCKICGE 181
Query: 231 GGHRAKDCPDK 241
H AK CP++
Sbjct: 182 VTHLAKHCPNR 192
>gi|291411194|ref|XP_002721877.1| PREDICTED: zinc finger protein 9 [Oryctolagus cuniculus]
Length = 171
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 61/116 (52%), Gaps = 20/116 (17%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCS--KAQDCFICKKGGH 233
DR CYNCG+ GH+A +C + R++ C+ CG H R C+ + Q C+ C + GH
Sbjct: 61 DRLQDICYNCGKTGHIAKDCLEPKREREQYCYTCGRQGHLARDCTHLEEQKCYSCGEFGH 120
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
K+C QV C +CG++GH +C+ + K+V CY C FGHL
Sbjct: 121 FQKEC----------TQVKCYRCGETGHVAINCKKA------KQVNCYRCGEFGHL 160
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 64/151 (42%), Gaps = 34/151 (22%)
Query: 183 CYNCGEEGHMAVNC-----RSAVKRKKP-------------CFVCGSLEHGVRQCSKAQD 224
C+ CG GH A C RS R + C+ CG H + C + QD
Sbjct: 6 CFKCGRSGHWARGCPRKEARSQGSRGRGRAIPGTSAMQADICYRCGESGHHAKNCDRLQD 65
Query: 225 -CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C K GH AKDC + + + Q C CG GH C + L+E +CY C
Sbjct: 66 ICYNCGKTGHIAKDCLEPKR---EREQYCYTCGRQGHLARDCTH------LEEQKCYSCG 116
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
FGH +V C+RCG+ GH +
Sbjct: 117 EFGHF------QKECTQVKCYRCGETGHVAI 141
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 62/134 (46%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH A NC + + C+ CG H + C + Q C+ C + GH A+D
Sbjct: 47 CYRCGESGHHAKNCD---RLQDICYNCGKTGHIAKDCLEPKREREQYCYTCGRQGHLARD 103
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH C +V+CY C GH V I+
Sbjct: 104 CTHLEE------QKCYSCGEFGHFQKEC---------TQVKCYRCGETGH---VAINCKK 145
Query: 298 PGEVSCFRCGQLGH 311
+V+C+RCG+ GH
Sbjct: 146 AKQVNCYRCGEFGH 159
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 11/101 (10%)
Query: 173 FDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGG 232
+P Q CY CG +GH+A +C ++K C+ CG H ++C++ + C+ C + G
Sbjct: 81 LEPKREREQYCYTCGRQGHLARDCTHLEEQK--CYSCGEFGHFQKECTQVK-CYRCGETG 137
Query: 233 HRAKDCPDKHKSGFQNAQV-CLKCGDSGHDMFSCRNSYSLD 272
H A +C + QV C +CG+ GH C N + D
Sbjct: 138 HVAINCK-------KAKQVNCYRCGEFGHLARECDNEMASD 171
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 21/103 (20%)
Query: 223 QDCFICKKGGHRAKDCPDKHK--------------SGFQNAQVCLKCGDSGHDMFSCRNS 268
++CF C + GH A+ CP K + A +C +CG+SGH +C
Sbjct: 4 KECFKCGRSGHWARGCPRKEARSQGSRGRGRAIPGTSAMQADICYRCGESGHHAKNC--- 60
Query: 269 YSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
D L+++ CY C GH+ + E C+ CG+ GH
Sbjct: 61 ---DRLQDI-CYNCGKTGHIAKDCLEPKREREQYCYTCGRQGH 99
>gi|158257670|dbj|BAF84808.1| unnamed protein product [Homo sapiens]
Length = 179
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 69/148 (46%), Gaps = 32/148 (21%)
Query: 177 DRGWQ--------TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQ 223
DRG+Q CY CGE GH+A +C + + C+ CG H + C + Q
Sbjct: 40 DRGFQFVSSSLPDICYRCGESGHLAKDC-DLQEDVEACYNCGRGGHIAKDCKEPKREREQ 98
Query: 224 DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C K GH A+DC + Q C CG+ GH D +V+CY C
Sbjct: 99 CCYNCGKPGHLARDCD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCG 143
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGH 311
GH V I+ + EV+C+RCG+ GH
Sbjct: 144 ETGH---VAINCSKTSEVNCYRCGESGH 168
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 18/111 (16%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKD 237
+ CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KD
Sbjct: 74 EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKD 133
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C C +CG++GH +C + EV CY C GHL
Sbjct: 134 C---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 169
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 91 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 147
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 148 VAINCS-------KTSEVNCYRCGESGH 168
>gi|294882220|ref|XP_002769652.1| cellular nucleic acid binding protein, putative [Perkinsus marinus
ATCC 50983]
gi|239873234|gb|EER02370.1| cellular nucleic acid binding protein, putative [Perkinsus marinus
ATCC 50983]
Length = 144
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA--QDCFICKKGG 232
P R CYNCG+ H+A +C + ++PCF CG + H R C+ + CF C + G
Sbjct: 41 PTGRRPMNCYNCGKPDHLARDCPNEQTNQRPCFKCGQVGHFARDCTAPDTRACFRCGETG 100
Query: 233 HRAKDCP--------DKHKSGF-QNAQVCLKCGDSGHDMFSCRN 267
H A+DCP D+ G + C KCG GH C N
Sbjct: 101 HLARDCPNEDTRPESDRAPRGRGAEGRNCFKCGQPGHFARDCPN 144
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 58/147 (39%), Gaps = 46/147 (31%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP-------CFVCGSLEHGVRQCSKAQ----DCFICKKG 231
C+ C E GH A +C A +P C+ CG +H R C Q CF C +
Sbjct: 19 CFICNEPGHFARDCPQATSSSRPTGRRPMNCYNCGKPDHLARDCPNEQTNQRPCFKCGQV 78
Query: 232 GHRAKDC--PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC 289
GH A+DC PD + C +CG++GH C N + +
Sbjct: 79 GHFARDCTAPD--------TRACFRCGETGHLARDCPNEDTRPE---------------- 114
Query: 290 CVNISDAVPG-----EVSCFRCGQLGH 311
SD P +CF+CGQ GH
Sbjct: 115 ----SDRAPRGRGAEGRNCFKCGQPGH 137
>gi|294873524|ref|XP_002766658.1| cellular nucleic acid binding protein, putative [Perkinsus marinus
ATCC 50983]
gi|239867715|gb|EEQ99375.1| cellular nucleic acid binding protein, putative [Perkinsus marinus
ATCC 50983]
Length = 144
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA--QDCFICKKGG 232
P R CYNCG+ H+A +C + ++PCF CG + H R C+ + CF C + G
Sbjct: 41 PTGRRPMNCYNCGKPDHLARDCPNEQTNQRPCFKCGQVGHFARDCTAPDTRACFRCGETG 100
Query: 233 HRAKDCP--------DKHKSGF-QNAQVCLKCGDSGHDMFSCRN 267
H A+DCP D+ G + C KCG GH C N
Sbjct: 101 HLARDCPNEDTRPESDRAPRGRGAEGRNCFKCGQPGHFARDCPN 144
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 58/147 (39%), Gaps = 46/147 (31%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP-------CFVCGSLEHGVRQCSKAQ----DCFICKKG 231
C+ C E GH A +C A +P C+ CG +H R C Q CF C +
Sbjct: 19 CFICNEPGHFARDCPQASSSTRPTGRRPMNCYNCGKPDHLARDCPNEQTNQRPCFKCGQV 78
Query: 232 GHRAKDC--PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC 289
GH A+DC PD + C +CG++GH C N + +
Sbjct: 79 GHFARDCTAPD--------TRACFRCGETGHLARDCPNEDTRPE---------------- 114
Query: 290 CVNISDAVPG-----EVSCFRCGQLGH 311
SD P +CF+CGQ GH
Sbjct: 115 ----SDRAPRGRGAEGRNCFKCGQPGH 137
>gi|148666816|gb|EDK99232.1| cellular nucleic acid binding protein, isoform CRA_e [Mus musculus]
Length = 142
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 66/149 (44%), Gaps = 20/149 (13%)
Query: 143 ETADNGDEGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVK- 201
E A G + ++ + L+ PR R TCYNCG GH+A +C+ +
Sbjct: 1 EAAAEGSSLFPRLSLTSATAVVSLVILPRIVIC--RRMVTCYNCGRGGHIAKDCKEPKRE 58
Query: 202 RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
R++ C+ CG H R C A Q C+ C + GH KDC C +CG++G
Sbjct: 59 REQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVK---------CYRCGETG 109
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
H +C + EV CY C GHL
Sbjct: 110 HVAINCSKT------SEVNCYRCGESGHL 132
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 11/93 (11%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 54 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 110
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGHDMFSC 265
A +C + ++V C +CG+SGH C
Sbjct: 111 VAINCS-------KTSEVNCYRCGESGHLAREC 136
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 18/105 (17%)
Query: 219 CSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC-----RNSYSLDD 273
C + C+ C +GGH AKDC + + + Q C CG GH C + YS +
Sbjct: 33 CRRMVTCYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDCDHADEQKCYSCGE 89
Query: 274 LKEVQ-------CYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
+Q CY C GH V I+ + EV+C+RCG+ GH
Sbjct: 90 FGHIQKDCTKVKCYRCGETGH---VAINCSKTSEVNCYRCGESGH 131
>gi|54696090|gb|AAV38417.1| zinc finger protein 9 (a cellular retroviral nucleic acid binding
protein) [synthetic construct]
gi|61368820|gb|AAX43242.1| zinc finger protein 9 [synthetic construct]
Length = 178
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 69/148 (46%), Gaps = 34/148 (22%)
Query: 177 DRGWQ--------TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQ 223
DRG+Q CY CGE GH+A +C ++ C+ CG H + C + Q
Sbjct: 40 DRGFQFVSSSLPDICYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPKREREQ 96
Query: 224 DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C K GH A+DC + Q C CG+ GH D +V+CY C
Sbjct: 97 CCYNCGKPGHLARDCDHA------DEQKCYSCGEFGHIQ---------KDCTKVKCYRCG 141
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGH 311
GH V I+ + EV+C+RCG+ GH
Sbjct: 142 ETGH---VAINCSKTSEVNCYRCGESGH 166
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 73 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 132
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 133 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 167
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 63/158 (39%), Gaps = 41/158 (25%)
Query: 183 CYNCGEEGHMAVNCRSA-----------------------VKRKKP--CFVCGSLEHGVR 217
C+ CG GH A C + V P C+ CG H +
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 218 QCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKE 276
C +D C+ C +GGH AKDC + + + Q C CG GH C D E
Sbjct: 66 DCDLQEDACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADE 116
Query: 277 VQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
+CY C FGH+ D +V C+RCG+ GH +
Sbjct: 117 QKCYSCGEFGHI----QKDCT--KVKCYRCGETGHVAI 148
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 89 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 145
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 146 VAINCS-------KTSEVNCYRCGESGH 166
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 53/134 (39%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKS----------------GFQNAQ-----VCLKCGDSGH 260
+ +CF C + GH A++CP GFQ +C +CG+SGH
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 62
Query: 261 DMFSCRNSYSLDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----- 302
C DL+E CY C GH+ CC N PG ++
Sbjct: 63 LAKDC-------DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDH 113
Query: 303 -----CFRCGQLGH 311
C+ CG+ GH
Sbjct: 114 ADEQKCYSCGEFGH 127
>gi|402910570|ref|XP_003917942.1| PREDICTED: zinc finger CCHC domain-containing protein 13-like
[Papio anubis]
Length = 170
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 61/135 (45%), Gaps = 26/135 (19%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-----KAQDCFICKKGGHRAK 236
TCY CGE GH A NC V C+ CG H + C + Q C+ C + GH A
Sbjct: 46 TCYRCGEFGHHAKNC---VLLGNICYNCGRSGHIAKDCKEPKRERNQHCYTCGRLGHLAY 102
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDA 296
DC Q Q C CG GH D +V+CY C GH V I+ +
Sbjct: 103 DCDR------QKEQKCYSCGKLGHIQ---------KDCAQVKCYRCGETGH---VAINCS 144
Query: 297 VPGEVSCFRCGQLGH 311
+V+C+RCG+ GH
Sbjct: 145 KASQVNCYRCGESGH 159
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CY CG GH+A +C ++++ C+ CG L H + C++ + C+ C + GH
Sbjct: 82 EPKRERNQHCYTCGRLGHLAYDCDR--QKEQKCYSCGKLGHIQKDCAQVK-CYRCGETGH 138
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + +QV C +CG+SGH
Sbjct: 139 VAINCS-------KASQVNCYRCGESGH 159
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 7/63 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ--DCFICKKGGHRAKDC 238
Q CY+CG+ GH+ +C + VK C+ CG H CSKA +C+ C + GH A++C
Sbjct: 110 QKCYSCGKLGHIQKDC-AQVK----CYRCGETGHVAINCSKASQVNCYRCGESGHLAREC 164
Query: 239 PDK 241
P +
Sbjct: 165 PSE 167
>gi|2665788|gb|AAB88490.1| cellular nucleic acid binding protein [Gallus gallus]
Length = 172
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 25/134 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ + C+ CG H + C + Q C+ C K GH A+D
Sbjct: 48 CYRCGESGHLAKDCD--LQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 105
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 106 CD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSK 147
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 148 TSEVNCYRCGESGH 161
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 18/111 (16%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKD 237
+ CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KD
Sbjct: 67 EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKD 126
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C C +CG++GH +C + EV CY C GHL
Sbjct: 127 C---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 162
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 63/153 (41%), Gaps = 36/153 (23%)
Query: 183 CYNCGEEGHMAVNCRSA-----------------VKRKKP--CFVCGSLEHGVRQCSKAQ 223
C+ CG GH A C + + P C+ CG H + C +
Sbjct: 6 CFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDLQE 65
Query: 224 D--CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYI 281
D C+ C +GGH AKDC + + + Q C CG GH C D E +CY
Sbjct: 66 DEACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYS 116
Query: 282 CRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C FGH+ D +V C+RCG+ GH +
Sbjct: 117 CGEFGHI----QKDCT--KVKCYRCGETGHVAI 143
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 84 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 140
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 141 VAINCS-------KTSEVNCYRCGESGH 161
>gi|387017354|gb|AFJ50795.1| Cellular nucleic acid binding protein [Crotalus adamanteus]
Length = 171
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 25/134 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ + C+ CG H + C + Q C+ C K GH A+D
Sbjct: 47 CYRCGESGHLAKDCD--LQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 104
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 105 CD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSK 146
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 147 TSEVNCYRCGESGH 160
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 18/111 (16%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKD 237
+ CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KD
Sbjct: 66 EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKD 125
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C C +CG++GH +C + EV CY C GHL
Sbjct: 126 C---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 161
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 63/152 (41%), Gaps = 35/152 (23%)
Query: 183 CYNCGEEGHMAVNCRSA----------------VKRKKP--CFVCGSLEHGVRQCSKAQD 224
C+ CG GH A C + + P C+ CG H + C +D
Sbjct: 6 CFKCGRTGHWARECPTGIGRGRGMRSRGRGFQFMSSSLPDICYRCGESGHLAKDCDLQED 65
Query: 225 --CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYIC 282
C+ C +GGH AKDC + + + Q C CG GH C D E +CY C
Sbjct: 66 EACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSC 116
Query: 283 RCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
FGH+ D +V C+RCG+ GH +
Sbjct: 117 GEFGHI----QKDCT--KVKCYRCGETGHVAI 142
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 83 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 139
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 140 VAINCS-------KTSEVNCYRCGESGH 160
>gi|388501938|gb|AFK39035.1| unknown [Medicago truncatula]
Length = 220
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 206 CFVCGSLEHGVRQCSKAQD------CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
CF+C L+H + C++ + C C++ GHRA++CPD ++ + C CGD+G
Sbjct: 69 CFICKGLDHIAKFCTQKAEWEKNKICLRCRRRGHRAQNCPDGGSK--EDFKYCYNCGDNG 126
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
H + +C + QC++C+ GHL C N P C CG + H
Sbjct: 127 HSLANCPHPLQEGGTMFAQCFVCKEQGHLSKNCPKNAHGIYPKGGCCKICGGVTH 181
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 48/104 (46%), Gaps = 16/104 (15%)
Query: 159 DNIVLRKLLRGPRYFDPPDRG----WQTCYNCGEEGHMAVNCRSAVKRK----KPCFVCG 210
+ I LR RG R + PD G ++ CYNCG+ GH NC ++ CFVC
Sbjct: 91 NKICLRCRRRGHRAQNCPDGGSKEDFKYCYNCGDNGHSLANCPHPLQEGGTMFAQCFVCK 150
Query: 211 SLEHGVRQCSKAQD--------CFICKKGGHRAKDCPDKHKSGF 246
H + C K C IC H A+DCPDK ++GF
Sbjct: 151 EQGHLSKNCPKNAHGIYPKGGCCKICGGVTHLARDCPDKGQNGF 194
>gi|261205624|ref|XP_002627549.1| zinc knuckle transcription factor [Ajellomyces dermatitidis
SLH14081]
gi|239592608|gb|EEQ75189.1| zinc knuckle transcription factor [Ajellomyces dermatitidis
SLH14081]
Length = 473
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKD 237
C NCG+ GH A +C K CF CG H +C+K + C IC+K GH A +
Sbjct: 41 ACRNCGQSGHFARDCTEPRKATGACFNCGEEGHNKAECTKPRVFKGHCRICEKEGHPASE 100
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
CP+K A VC C + GH C + D
Sbjct: 101 CPEK------PADVCKNCKEEGHKTMECTQNRKFD 129
>gi|4827071|ref|NP_003409.1| cellular nucleic acid-binding protein isoform 3 [Homo sapiens]
gi|12018264|ref|NP_072120.1| cellular nucleic acid-binding protein [Rattus norvegicus]
gi|197099834|ref|NP_001126703.1| cellular nucleic acid-binding protein [Pongo abelii]
gi|356582433|ref|NP_001239193.1| cellular nucleic acid-binding protein isoform 1 [Canis lupus
familiaris]
gi|301764545|ref|XP_002917687.1| PREDICTED: cellular nucleic acid-binding protein-like [Ailuropoda
melanoleuca]
gi|332261811|ref|XP_003279960.1| PREDICTED: cellular nucleic acid-binding protein isoform 4
[Nomascus leucogenys]
gi|332817849|ref|XP_516737.3| PREDICTED: uncharacterized protein LOC460682 isoform 4 [Pan
troglodytes]
gi|338714528|ref|XP_003363101.1| PREDICTED: cellular nucleic acid-binding protein-like [Equus
caballus]
gi|344275961|ref|XP_003409779.1| PREDICTED: cellular nucleic acid-binding protein-like [Loxodonta
africana]
gi|348553985|ref|XP_003462806.1| PREDICTED: cellular nucleic acid-binding protein-like isoform 1
[Cavia porcellus]
gi|354482847|ref|XP_003503607.1| PREDICTED: cellular nucleic acid-binding protein isoform 1
[Cricetulus griseus]
gi|390475369|ref|XP_002758716.2| PREDICTED: cellular nucleic acid-binding protein isoform 1
[Callithrix jacchus]
gi|397518580|ref|XP_003829462.1| PREDICTED: cellular nucleic acid-binding protein isoform 1 [Pan
paniscus]
gi|402887087|ref|XP_003906936.1| PREDICTED: cellular nucleic acid-binding protein [Papio anubis]
gi|403268271|ref|XP_003926201.1| PREDICTED: cellular nucleic acid-binding protein [Saimiri
boliviensis boliviensis]
gi|410037468|ref|XP_003950232.1| PREDICTED: uncharacterized protein LOC460682 [Pan troglodytes]
gi|410037472|ref|XP_003950234.1| PREDICTED: uncharacterized protein LOC460682 [Pan troglodytes]
gi|410037479|ref|XP_003950237.1| PREDICTED: uncharacterized protein LOC460682 [Pan troglodytes]
gi|410951814|ref|XP_003982588.1| PREDICTED: cellular nucleic acid-binding protein isoform 1 [Felis
catus]
gi|426342036|ref|XP_004036322.1| PREDICTED: cellular nucleic acid-binding protein isoform 1 [Gorilla
gorilla gorilla]
gi|426342040|ref|XP_004036324.1| PREDICTED: cellular nucleic acid-binding protein isoform 3 [Gorilla
gorilla gorilla]
gi|426342042|ref|XP_004036325.1| PREDICTED: cellular nucleic acid-binding protein isoform 4 [Gorilla
gorilla gorilla]
gi|426342044|ref|XP_004036326.1| PREDICTED: cellular nucleic acid-binding protein isoform 5 [Gorilla
gorilla gorilla]
gi|441665181|ref|XP_004091798.1| PREDICTED: cellular nucleic acid-binding protein [Nomascus
leucogenys]
gi|441665186|ref|XP_004091799.1| PREDICTED: cellular nucleic acid-binding protein [Nomascus
leucogenys]
gi|50401851|sp|P62634.1|CNBP_RAT RecName: Full=Cellular nucleic acid-binding protein; Short=CNBP;
AltName: Full=Zinc finger protein 9
gi|50401852|sp|P62633.1|CNBP_HUMAN RecName: Full=Cellular nucleic acid-binding protein; Short=CNBP;
AltName: Full=Zinc finger protein 9
gi|75054771|sp|Q5R5R5.1|CNBP_PONAB RecName: Full=Cellular nucleic acid-binding protein; Short=CNBP;
AltName: Full=Zinc finger protein 9
gi|8650478|gb|AAF78224.1|AF242550_1 cellular nucleic acid binding protein [Rattus norvegicus]
gi|643576|gb|AAA61975.1| SRE-binding protein [Homo sapiens]
gi|790571|gb|AAA91782.1| nucleic acid binding protein [Homo sapiens]
gi|809511|dbj|BAA08212.1| Cellular Nucleic Acid Binding Protein [Rattus norvegicus]
gi|26344578|dbj|BAC35938.1| unnamed protein product [Mus musculus]
gi|38328236|gb|AAH62225.1| CCHC-type zinc finger, nucleic acid binding protein [Rattus
norvegicus]
gi|40738013|gb|AAR89462.1| zinc finger protein 9 [Homo sapiens]
gi|40738017|gb|AAR89464.1| cellular nucleic acid binding protein [Rattus norvegicus]
gi|55732400|emb|CAH92901.1| hypothetical protein [Pongo abelii]
gi|62205335|gb|AAH93058.1| CCHC-type zinc finger, nucleic acid binding protein [Homo sapiens]
gi|67970964|dbj|BAE01824.1| unnamed protein product [Macaca fascicularis]
gi|71891589|dbj|BAE16993.1| cellular nucleic acid binding protein [Rattus norvegicus]
gi|71891591|dbj|BAE16994.1| cellular nucleic acid binding protein [Rattus norvegicus]
gi|74144600|dbj|BAE27288.1| unnamed protein product [Mus musculus]
gi|74191437|dbj|BAE30298.1| unnamed protein product [Mus musculus]
gi|74195828|dbj|BAE30476.1| unnamed protein product [Mus musculus]
gi|74211374|dbj|BAE26440.1| unnamed protein product [Mus musculus]
gi|74226682|dbj|BAE26992.1| unnamed protein product [Mus musculus]
gi|74226907|dbj|BAE27097.1| unnamed protein product [Mus musculus]
gi|74226950|dbj|BAE27117.1| unnamed protein product [Mus musculus]
gi|90084990|dbj|BAE91236.1| unnamed protein product [Macaca fascicularis]
gi|119599679|gb|EAW79273.1| zinc finger protein 9 (a cellular retroviral nucleic acid binding
protein), isoform CRA_c [Homo sapiens]
gi|119599683|gb|EAW79277.1| zinc finger protein 9 (a cellular retroviral nucleic acid binding
protein), isoform CRA_c [Homo sapiens]
gi|148666812|gb|EDK99228.1| cellular nucleic acid binding protein, isoform CRA_a [Mus musculus]
gi|149036676|gb|EDL91294.1| cellular nucleic acid binding protein 1, isoform CRA_b [Rattus
norvegicus]
gi|189067296|dbj|BAG37006.1| unnamed protein product [Homo sapiens]
gi|208965940|dbj|BAG72984.1| CCHC-type zinc finger, nucleic acid binding protein [synthetic
construct]
gi|281347013|gb|EFB22597.1| hypothetical protein PANDA_006035 [Ailuropoda melanoleuca]
gi|344253372|gb|EGW09476.1| Cellular nucleic acid-binding protein [Cricetulus griseus]
gi|351695335|gb|EHA98253.1| Cellular nucleic acid-binding protein [Heterocephalus glaber]
gi|387543018|gb|AFJ72136.1| cellular nucleic acid-binding protein isoform 3 [Macaca mulatta]
gi|410253690|gb|JAA14812.1| CCHC-type zinc finger, nucleic acid binding protein [Pan
troglodytes]
gi|440895043|gb|ELR47334.1| Cellular nucleic acid-binding protein [Bos grunniens mutus]
gi|444512840|gb|ELV10182.1| Cellular nucleic acid-binding protein [Tupaia chinensis]
Length = 177
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 69/148 (46%), Gaps = 34/148 (22%)
Query: 177 DRGWQ--------TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQ 223
DRG+Q CY CGE GH+A +C ++ C+ CG H + C + Q
Sbjct: 40 DRGFQFVSSSLPDICYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPKREREQ 96
Query: 224 DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C K GH A+DC + Q C CG+ GH D +V+CY C
Sbjct: 97 CCYNCGKPGHLARDCD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCG 141
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGH 311
GH V I+ + EV+C+RCG+ GH
Sbjct: 142 ETGH---VAINCSKTSEVNCYRCGESGH 166
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 73 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 132
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 133 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 167
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 63/158 (39%), Gaps = 41/158 (25%)
Query: 183 CYNCGEEGHMAVNCRSA-----------------------VKRKKP--CFVCGSLEHGVR 217
C+ CG GH A C + V P C+ CG H +
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 218 QCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKE 276
C +D C+ C +GGH AKDC + + + Q C CG GH C D E
Sbjct: 66 DCDLQEDACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADE 116
Query: 277 VQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
+CY C FGH+ D +V C+RCG+ GH +
Sbjct: 117 QKCYSCGEFGHI----QKDCT--KVKCYRCGETGHVAI 148
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 89 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 145
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 146 VAINCS-------KTSEVNCYRCGESGH 166
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 53/134 (39%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKS----------------GFQNAQ-----VCLKCGDSGH 260
+ +CF C + GH A++CP GFQ +C +CG+SGH
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 62
Query: 261 DMFSCRNSYSLDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----- 302
C DL+E CY C GH+ CC N PG ++
Sbjct: 63 LAKDC-------DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDH 113
Query: 303 -----CFRCGQLGH 311
C+ CG+ GH
Sbjct: 114 ADEQKCYSCGEFGH 127
>gi|410293500|gb|JAA25350.1| CCHC-type zinc finger, nucleic acid binding protein [Pan
troglodytes]
Length = 176
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 69/148 (46%), Gaps = 34/148 (22%)
Query: 177 DRGWQ--------TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQ 223
DRG+Q CY CGE GH+A +C ++ C+ CG H + C + Q
Sbjct: 39 DRGFQFVSSSLPDICYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPKREREQ 95
Query: 224 DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C K GH A+DC + Q C CG+ GH D +V+CY C
Sbjct: 96 CCYNCGKPGHLARDCD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCG 140
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGH 311
GH V I+ + EV+C+RCG+ GH
Sbjct: 141 ETGH---VAINCSKTSEVNCYRCGESGH 165
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 72 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 131
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 132 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 166
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 63/157 (40%), Gaps = 40/157 (25%)
Query: 183 CYNCGEEGHMAVNCRSA----------------------VKRKKP--CFVCGSLEHGVRQ 218
C+ CG GH A C + V P C+ CG H +
Sbjct: 6 CFKCGRSGHWARECPTGGGRGGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKD 65
Query: 219 CSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
C +D C+ C +GGH AKDC + + + Q C CG GH C D E
Sbjct: 66 CDLQEDACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQ 116
Query: 278 QCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
+CY C FGH+ D +V C+RCG+ GH +
Sbjct: 117 KCYSCGEFGHI----QKDCT--KVKCYRCGETGHVAI 147
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 88 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 144
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 145 VAINCS-------KTSEVNCYRCGESGH 165
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 50/133 (37%), Gaps = 52/133 (39%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKS---------------GFQNAQ-----VCLKCGDSGHD 261
+ +CF C + GH A++CP GFQ +C +CG+SGH
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHL 62
Query: 262 MFSCRNSYSLDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS------ 302
C DL+E CY C GH+ CC N PG ++
Sbjct: 63 AKDC-------DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDHA 113
Query: 303 ----CFRCGQLGH 311
C+ CG+ GH
Sbjct: 114 DEQKCYSCGEFGH 126
>gi|383421411|gb|AFH33919.1| cellular nucleic acid-binding protein isoform 3 [Macaca mulatta]
gi|410221754|gb|JAA08096.1| CCHC-type zinc finger, nucleic acid binding protein [Pan
troglodytes]
Length = 176
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 69/148 (46%), Gaps = 34/148 (22%)
Query: 177 DRGWQ--------TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQ 223
DRG+Q CY CGE GH+A +C ++ C+ CG H + C + Q
Sbjct: 39 DRGFQFVSSSLPDICYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPKREREQ 95
Query: 224 DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C K GH A+DC + Q C CG+ GH D +V+CY C
Sbjct: 96 CCYNCGKPGHLARDCD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCG 140
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGH 311
GH V I+ + EV+C+RCG+ GH
Sbjct: 141 ETGH---VAINCSKTSEVNCYRCGESGH 165
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 72 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 131
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 132 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 166
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 63/157 (40%), Gaps = 40/157 (25%)
Query: 183 CYNCGEEGHMAVNCRSA----------------------VKRKKP--CFVCGSLEHGVRQ 218
C+ CG GH A C + V P C+ CG H +
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFTSDRGFQFVSSSLPDICYRCGESGHLAKD 65
Query: 219 CSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
C +D C+ C +GGH AKDC + + + Q C CG GH C D E
Sbjct: 66 CDLQEDACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQ 116
Query: 278 QCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
+CY C FGH+ D +V C+RCG+ GH +
Sbjct: 117 KCYSCGEFGHI----QKDCT--KVKCYRCGETGHVAI 147
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 88 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 144
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 145 VAINCS-------KTSEVNCYRCGESGH 165
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 50/133 (37%), Gaps = 52/133 (39%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKS---------------GFQNAQ-----VCLKCGDSGHD 261
+ +CF C + GH A++CP GFQ +C +CG+SGH
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFTSDRGFQFVSSSLPDICYRCGESGHL 62
Query: 262 MFSCRNSYSLDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS------ 302
C DL+E CY C GH+ CC N PG ++
Sbjct: 63 AKDC-------DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDHA 113
Query: 303 ----CFRCGQLGH 311
C+ CG+ GH
Sbjct: 114 DEQKCYSCGEFGH 126
>gi|239611240|gb|EEQ88227.1| zinc knuckle transcription factor [Ajellomyces dermatitidis ER-3]
Length = 477
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKD 237
C NCG+ GH A +C K CF CG H +C+K + C IC+K GH A +
Sbjct: 45 ACRNCGQSGHFARDCTEPRKATGACFNCGEEGHNKAECTKPRVFKGHCRICEKEGHPASE 104
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
CP+K A VC C + GH C + D
Sbjct: 105 CPEK------PADVCKNCKEEGHKTMECTQNRKFD 133
>gi|67423403|dbj|BAD99522.1| VASA RNA helicase [Daphnia magna]
Length = 775
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 12/145 (8%)
Query: 179 GWQTCYNCGEEGHMAVNC---RSAVKRKKPCFVCGSLEHGVRQCSKA--------QDCFI 227
G + C+ CGEEGHMA C + C CG H R+C +A + C
Sbjct: 137 GGRPCHKCGEEGHMARECPKGGGGGGGSRACHKCGEEGHFSRECPQAGGGGGSGPRTCHK 196
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGH 287
C + GH +++CP + G ++ C KCG+ GH C C+ C GH
Sbjct: 197 CGEEGHFSRECP-QGGGGGGGSRACHKCGEEGHFSRECPQGGGGGGSGPRTCHKCGEEGH 255
Query: 288 LCCVNISDAVPGEVSCFRCGQLGHT 312
+ G+ CF+C + GHT
Sbjct: 256 VSRDCPQGGGGGDSKCFKCHEAGHT 280
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 16/114 (14%)
Query: 181 QTCYNCGEEGHMAVNC---RSAVKRKKPCFVCGSLEHGVRQCSK--------AQDCFICK 229
+TC+ CGEEGH + C + C CG H R+C + + C C
Sbjct: 192 RTCHKCGEEGHFSRECPQGGGGGGGSRACHKCGEEGHFSRECPQGGGGGGSGPRTCHKCG 251
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYS--LDDLKEVQCYI 281
+ GH ++DCP + G C KC ++GH C N +S +D K + YI
Sbjct: 252 EEGHVSRDCP---QGGGGGDSKCFKCHEAGHTSKDCPNPFSELTEDGKPREQYI 302
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 51/136 (37%), Gaps = 11/136 (8%)
Query: 187 GEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-------AQDCFICKKGGHRAKDCP 239
G G N + +PC CG H R+C K ++ C C + GH +++CP
Sbjct: 122 GGWGSSGANGLKSTGGGRPCHKCGEEGHMARECPKGGGGGGGSRACHKCGEEGHFSRECP 181
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDA 296
G + C KCG+ GH C C+ C GH C
Sbjct: 182 QAGGGGGSGPRTCHKCGEEGHFSRECPQGGGGGGGSRA-CHKCGEEGHFSRECPQGGGGG 240
Query: 297 VPGEVSCFRCGQLGHT 312
G +C +CG+ GH
Sbjct: 241 GSGPRTCHKCGEEGHV 256
>gi|157909782|ref|NP_001103215.1| cellular nucleic acid-binding protein isoform 2 [Mus musculus]
gi|187608744|ref|NP_001120667.1| cellular nucleic acid-binding protein isoform 5 [Homo sapiens]
gi|68359739|gb|AAY96754.1| cellular nucleic acid binding protein beta variant 1 [Homo sapiens]
gi|74142441|dbj|BAE31974.1| unnamed protein product [Mus musculus]
Length = 171
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 25/134 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ + C+ CG H + C + Q C+ C K GH A+D
Sbjct: 47 CYRCGESGHLAKDCD--LQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 104
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 105 CD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSK 146
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 147 TSEVNCYRCGESGH 160
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 63/152 (41%), Gaps = 35/152 (23%)
Query: 183 CYNCGEEGHMAVNCRSA----------------VKRKKP--CFVCGSLEHGVRQCSKAQD 224
C+ CG GH A C + V P C+ CG H + C +D
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 65
Query: 225 --CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYIC 282
C+ C +GGH AKDC + + + Q C CG GH C D E +CY C
Sbjct: 66 EACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSC 116
Query: 283 RCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
FGH+ D +V C+RCG+ GH +
Sbjct: 117 GEFGHI----QKDCT--KVKCYRCGETGHVAI 142
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 18/111 (16%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKD 237
+ CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KD
Sbjct: 66 EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKD 125
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C C +CG++GH +C + EV CY C GHL
Sbjct: 126 C---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 161
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 83 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 139
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 140 VAINCS-------KTSEVNCYRCGESGH 160
>gi|291409842|ref|XP_002721203.1| PREDICTED: cellular nucleic acid binding protein-like isoform 2
[Oryctolagus cuniculus]
Length = 161
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 25/134 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ + C+ CG H + C + Q C+ C K GH A+D
Sbjct: 37 CYRCGESGHLAKDCD--LQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 94
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 95 CD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSK 136
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 137 TSEVNCYRCGESGH 150
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 63/142 (44%), Gaps = 25/142 (17%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP--------CFVCGSLEHGVRQCSKAQD--CFICKKGG 232
C+ CG GH A C + R + C+ CG H + C +D C+ C +GG
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRDICYRCGESGHLAKDCDLQEDEACYNCGRGG 65
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVN 292
H AKDC + + + Q C CG GH C D E +CY C FGH+
Sbjct: 66 HIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCGEFGHI---- 112
Query: 293 ISDAVPGEVSCFRCGQLGHTGL 314
D +V C+RCG+ GH +
Sbjct: 113 QKDCT--KVKCYRCGETGHVAI 132
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 18/111 (16%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKD 237
+ CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KD
Sbjct: 56 EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKD 115
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C C +CG++GH +C + EV CY C GHL
Sbjct: 116 C---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 151
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 73 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 129
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 130 VAINCS-------KTSEVNCYRCGESGH 150
>gi|187608726|ref|NP_001120664.1| cellular nucleic acid-binding protein isoform 1 [Homo sapiens]
gi|291393354|ref|XP_002713209.1| PREDICTED: zinc finger protein 9 isoform 1 [Oryctolagus cuniculus]
gi|355564532|gb|EHH21032.1| hypothetical protein EGK_04008 [Macaca mulatta]
gi|355786375|gb|EHH66558.1| hypothetical protein EGM_03574 [Macaca fascicularis]
Length = 179
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 69/148 (46%), Gaps = 32/148 (21%)
Query: 177 DRGWQ--------TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQ 223
DRG+Q CY CGE GH+A +C + + C+ CG H + C + Q
Sbjct: 40 DRGFQFVSSSLPDICYRCGESGHLAKDC-DLQEDVEACYNCGRGGHIAKDCKEPKREREQ 98
Query: 224 DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C K GH A+DC + Q C CG+ GH D +V+CY C
Sbjct: 99 CCYNCGKPGHLARDCD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCG 143
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGH 311
GH V I+ + EV+C+RCG+ GH
Sbjct: 144 ETGH---VAINCSKTSEVNCYRCGESGH 168
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 18/111 (16%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKD 237
+ CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KD
Sbjct: 74 EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKD 133
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C C +CG++GH +C + EV CY C GHL
Sbjct: 134 C---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 169
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 91 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 147
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 148 VAINCS-------KTSEVNCYRCGESGH 168
>gi|410988851|ref|XP_004000690.1| PREDICTED: cellular nucleic acid-binding protein-like [Felis catus]
Length = 171
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 64/134 (47%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH A NC + C+ CG H + C + Q C+ C + GH A+D
Sbjct: 48 CYRCGESGHHAKNCDLL---EDICYNCGRSGHIAKDCIEPKREREQCCYTCGRPGHLARD 104
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C D+ Q Q C CG+ GH D +V+CY C GH+ I+ +
Sbjct: 105 C-DR-----QEEQKCYSCGEYGHIQ---------KDCTQVKCYRCGEIGHM---AINCSK 146
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 147 TSEVNCYRCGESGH 160
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 35/152 (23%)
Query: 183 CYNCGEEGHMAVNCR-------------------SAVKRKKPCFVCGSLEHGVRQCSKAQ 223
C+ CG GH A C S+ C+ CG H + C +
Sbjct: 6 CFKCGRSGHWARGCPRGGGSQGHGARGRVRGSQCSSTNPSDICYRCGESGHHAKNCDLLE 65
Query: 224 D-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYIC 282
D C+ C + GH AKDC + + + Q C CG GH C D +E +CY C
Sbjct: 66 DICYNCGRSGHIAKDCIEPKR---EREQCCYTCGRPGHLARDC------DRQEEQKCYSC 116
Query: 283 RCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
+GH+ D +V C+RCG++GH +
Sbjct: 117 GEYGHI----QKDCT--QVKCYRCGEIGHMAI 142
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--CFICKKGGHRAKDC 238
Q CY+CGE GH+ +C + VK C+ CG + H CSK + C+ C + GH A++C
Sbjct: 111 QKCYSCGEYGHIQKDC-TQVK----CYRCGEIGHMAINCSKTSEVNCYRCGESGHLAREC 165
Query: 239 P 239
P
Sbjct: 166 P 166
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Query: 173 FDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGG 232
+P Q CY CG GH+A +C ++K C+ CG H + C++ + C+ C + G
Sbjct: 82 IEPKREREQCCYTCGRPGHLARDCDRQEEQK--CYSCGEYGHIQKDCTQVK-CYRCGEIG 138
Query: 233 HRAKDCPDKHKSGFQNAQV-CLKCGDSGHDMFSC 265
H A +C + ++V C +CG+SGH C
Sbjct: 139 HMAINCS-------KTSEVNCYRCGESGHLAREC 165
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 22/104 (21%)
Query: 223 QDCFICKKGGHRAKDCPDKHKSGFQNAQ---------------VCLKCGDSGHDMFSCRN 267
++CF C + GH A+ CP S A+ +C +CG+SGH +C
Sbjct: 4 KECFKCGRSGHWARGCPRGGGSQGHGARGRVRGSQCSSTNPSDICYRCGESGHHAKNC-- 61
Query: 268 SYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
DL E CY C GH+ I E C+ CG+ GH
Sbjct: 62 -----DLLEDICYNCGRSGHIAKDCIEPKREREQCCYTCGRPGH 100
>gi|225470195|ref|XP_002268512.1| PREDICTED: uncharacterized protein LOC100242054 [Vitis vinifera]
Length = 401
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 10/117 (8%)
Query: 206 CFVCGSLEHGVRQCS-KAQ-----DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
CF+C + +H + C KAQ C +C++ GH K+CPDK + + ++C CG++G
Sbjct: 79 CFICKAKDHIAKHCPEKAQWERHKICLLCRQRGHSLKNCPDKGEEKL-DKKLCYNCGETG 137
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGHTG 313
H + +C K C+IC GHL C N P C CG + H
Sbjct: 138 HSLANCPQPLQEGGTKFASCFICNERGHLSKNCPKNSHGIYPKGGCCKICGGVTHLA 194
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 44/103 (42%), Gaps = 20/103 (19%)
Query: 176 PDRGWQ-----TCYNCGEEGHMAVNCRSAVK----RKKPCFVCGSLEHGVRQCSKAQD-- 224
PD+G + CYNCGE GH NC ++ + CF+C H + C K
Sbjct: 118 PDKGEEKLDKKLCYNCGETGHSLANCPQPLQEGGTKFASCFICNERGHLSKNCPKNSHGI 177
Query: 225 ------CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHD 261
C IC H AKDCP+K G N+ V G H+
Sbjct: 178 YPKGGCCKICGGVTHLAKDCPNK---GCNNSPVAAIAGGIKHE 217
>gi|99907876|gb|ABF68761.1| CNBP mutant S158A, partial [synthetic construct]
Length = 163
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 25/142 (17%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP---------CFVCGSLEHGVRQCSKAQD-CFICKKGG 232
C+ CG GH NC +A + + C+ CG H R C + +D C+ C +
Sbjct: 8 CFGCGRSGHWIKNCPNAGRGRGRGRGRGKDLFCYRCGEQGHIARDCEQTEDACYNCHRSX 67
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVN 292
H ++DC + K + Q C CG +GH C D E +CY C FGH
Sbjct: 68 HISRDCKEPKK---EREQCCYNCGKAGHVARDC------DHANEQKCYSCGGFGHF---- 114
Query: 293 ISDAVPGEVSCFRCGQLGHTGL 314
+ +V C+RCG++GH +
Sbjct: 115 --QKLCDKVKCYRCGEIGHVAV 134
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 61/134 (45%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE+GH+A +C + + C+ C H R C + Q C+ C K GH A+D
Sbjct: 40 CYRCGEQGHIARDCE---QTEDACYNCHRSXHISRDCKEPKKEREQCCYNCGKAGHVARD 96
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C N Q C CG GH C +V+CY C GH V + +
Sbjct: 97 CDHA------NEQKCYSCGGFGHFQKLC---------DKVKCYRCGEIGH---VAVQCSK 138
Query: 298 PGEVSCFRCGQLGH 311
EV+C+ CG+ GH
Sbjct: 139 ATEVNCYNCGKTGH 152
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKR----------------KKPCFVCGSLEHGVR 217
+P Q CYNCG+ GH+A +C A ++ K C+ CG + H
Sbjct: 75 EPKKEREQCCYNCGKAGHVARDCDHANEQKCYSCGGFGHFQKLCDKVKCYRCGEIGHVAV 134
Query: 218 QCSKAQD--CFICKKGGHRAKDCP 239
QCSKA + C+ C K GH A+DC
Sbjct: 135 QCSKATEVNCYNCGKTGHLARDCA 158
>gi|403413797|emb|CCM00497.1| predicted protein [Fibroporia radiculosa]
Length = 178
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 65/157 (41%), Gaps = 33/157 (21%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD----------- 224
P G TCYNCG EGH++ C S K K C+ CG H R C A +
Sbjct: 21 PKAGTPTCYNCGLEGHVSKECTSETKAKA-CYRCGQEGHISRDCPDAANAPPGAIGGAST 79
Query: 225 --CFICKKGGHRAKDCPDKHKSGFQ--------NAQVCLKCGDSGHDMFSCRNSYSLDDL 274
C+ C K GH A+ CPD G ++ C CG GH S D +
Sbjct: 80 TECYRCGKTGHIARTCPDAASGGGYGGGGGGNFGSKTCYTCGGVGH--------LSRDCV 131
Query: 275 KEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
+ +CY C GH ++ P +C+ CG GH
Sbjct: 132 QGSKCYNCSGVGH---ISRDCPQPQRRACYTCGSEGH 165
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 66/145 (45%), Gaps = 23/145 (15%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC---SKAQDCFICKKGGHRAKDCP 239
C+NCG GH A NC A C+ CG H ++C +KA+ C+ C + GH ++DCP
Sbjct: 7 CFNCGGFGHQAANCPKA--GTPTCYNCGLEGHVSKECTSETKAKACYRCGQEGHISRDCP 64
Query: 240 DKHKS-----GFQNAQVCLKCGDSGHDMFSCRNSYS--------LDDLKEVQCYICRCFG 286
D + G + C +CG +GH +C ++ S + CY C G
Sbjct: 65 DAANAPPGAIGGASTTECYRCGKTGHIARTCPDAASGGGYGGGGGGNFGSKTCYTCGGVG 124
Query: 287 HLCCVNISDAVPGEVSCFRCGQLGH 311
HL D V G C+ C +GH
Sbjct: 125 HL----SRDCVQGS-KCYNCSGVGH 144
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ--DCFICKKGGHRAK 236
G +TCY CG GH++ +C K C+ C + H R C + Q C+ C GH ++
Sbjct: 113 GSKTCYTCGGVGHLSRDCVQGSK----CYNCSGVGHISRDCPQPQRRACYTCGSEGHISR 168
Query: 237 DCP 239
DCP
Sbjct: 169 DCP 171
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 19/100 (19%)
Query: 220 SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQC 279
+ + CF C GH+A +CP K+G C CG GH C + K C
Sbjct: 2 ASGRGCFNCGGFGHQAANCP---KAG---TPTCYNCGLEGHVSKEC-----TSETKAKAC 50
Query: 280 YICRCFGHLC--CVNISDAVPGEVS------CFRCGQLGH 311
Y C GH+ C + ++A PG + C+RCG+ GH
Sbjct: 51 YRCGQEGHISRDCPDAANAPPGAIGGASTTECYRCGKTGH 90
>gi|67537882|ref|XP_662715.1| hypothetical protein AN5111.2 [Aspergillus nidulans FGSC A4]
gi|40743102|gb|EAA62292.1| hypothetical protein AN5111.2 [Aspergillus nidulans FGSC A4]
Length = 176
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 15/101 (14%)
Query: 179 GWQTCYNCGEEGHMAVNC-----------RSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
G Q CY CG GH+A NC R++ C+ CG H R C++ Q C+
Sbjct: 80 GGQECYKCGRVGHIARNCSQGGSYGGGFGGGYGGRQQTCYSCGGFGHMARDCTQGQKCYN 139
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
C + GH ++DCP + K +VC +C GH +C N+
Sbjct: 140 CGETGHVSRDCPTEAK----GERVCYQCKQPGHIQSACPNN 176
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 71/163 (43%), Gaps = 39/163 (23%)
Query: 174 DPPDRGWQTCYNCG-----EEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA------ 222
D P +G TCYNCG +GH++ C A K K C+ CG++ H R+C +A
Sbjct: 20 DCPKKGTPTCYNCGVLDRLGQGHVSRECTVAPKEKS-CYRCGAVGHISRECPQAGENERP 78
Query: 223 ---QDCFICKKGGHRAKDCPDKHKSGFQNA-------QVCLKCGDSGHDMFSCRNSYSLD 272
Q+C+ C + GH A++C G Q C CG GH + D
Sbjct: 79 AGGQECYKCGRVGHIARNCSQGGSYGGGFGGGYGGRQQTCYSCGGFGH--------MARD 130
Query: 273 DLKEVQCYICRCFGHLCCVNISDAVP----GEVSCFRCGQLGH 311
+ +CY C GH +S P GE C++C Q GH
Sbjct: 131 CTQGQKCYNCGETGH-----VSRDCPTEAKGERVCYQCKQPGH 168
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 25/150 (16%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLE-----HGVRQCS---KAQDCFICK 229
G + C+NCGE H A +C K+ P C+ CG L+ H R+C+ K + C+ C
Sbjct: 4 GGRVCFNCGEATHQARDC---PKKGTPTCYNCGVLDRLGQGHVSRECTVAPKEKSCYRCG 60
Query: 230 KGGHRAKDCPDKHKS-GFQNAQVCLKCGDSGHDMFSCRN-------SYSLDDLKEVQCYI 281
GH +++CP ++ Q C KCG GH +C ++ CY
Sbjct: 61 AVGHISRECPQAGENERPAGGQECYKCGRVGHIARNCSQGGSYGGGFGGGYGGRQQTCYS 120
Query: 282 CRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
C FGH+ D G+ C+ CG+ GH
Sbjct: 121 CGGFGHM----ARDCTQGQ-KCYNCGETGH 145
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 32/128 (25%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP-----CFVCGSLEHGVRQCS--------------- 220
++CY CG GH++ C A + ++P C+ CG + H R CS
Sbjct: 54 KSCYRCGAVGHISRECPQAGENERPAGGQECYKCGRVGHIARNCSQGGSYGGGFGGGYGG 113
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCY 280
+ Q C+ C GH A+DC Q C CG++GH C + E CY
Sbjct: 114 RQQTCYSCGGFGHMARDC--------TQGQKCYNCGETGHVSRDC----PTEAKGERVCY 161
Query: 281 ICRCFGHL 288
C+ GH+
Sbjct: 162 QCKQPGHI 169
>gi|259484556|tpe|CBF80881.1| TPA: zinc knuckle domain protein (Byr3), putative (AFU_orthologue;
AFUA_1G07630) [Aspergillus nidulans FGSC A4]
Length = 171
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 71/158 (44%), Gaps = 34/158 (21%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA---------QD 224
D P +G TCYNCG +GH++ C A K K C+ CG++ H R+C +A Q+
Sbjct: 20 DCPKKGTPTCYNCGGQGHVSRECTVAPKEKS-CYRCGAVGHISRECPQAGENERPAGGQE 78
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNA-------QVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
C+ C + GH A++C G Q C CG GH + D +
Sbjct: 79 CYKCGRVGHIARNCSQGGSYGGGFGGGYGGRQQTCYSCGGFGH--------MARDCTQGQ 130
Query: 278 QCYICRCFGHLCCVNISDAVP----GEVSCFRCGQLGH 311
+CY C GH +S P GE C++C Q GH
Sbjct: 131 KCYNCGETGH-----VSRDCPTEAKGERVCYQCKQPGH 163
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 15/101 (14%)
Query: 179 GWQTCYNCGEEGHMAVNC-----------RSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
G Q CY CG GH+A NC R++ C+ CG H R C++ Q C+
Sbjct: 75 GGQECYKCGRVGHIARNCSQGGSYGGGFGGGYGGRQQTCYSCGGFGHMARDCTQGQKCYN 134
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
C + GH ++DCP + K +VC +C GH +C N+
Sbjct: 135 CGETGHVSRDCPTEAK----GERVCYQCKQPGHIQSACPNN 171
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 20/145 (13%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCS---KAQDCFICKKGGHR 234
G + C+NCGE H A +C K+ P C+ CG H R+C+ K + C+ C GH
Sbjct: 4 GGRVCFNCGEATHQARDC---PKKGTPTCYNCGGQGHVSRECTVAPKEKSCYRCGAVGHI 60
Query: 235 AKDCPDKHKS-GFQNAQVCLKCGDSGHDMFSCRN-------SYSLDDLKEVQCYICRCFG 286
+++CP ++ Q C KCG GH +C ++ CY C FG
Sbjct: 61 SRECPQAGENERPAGGQECYKCGRVGHIARNCSQGGSYGGGFGGGYGGRQQTCYSCGGFG 120
Query: 287 HLCCVNISDAVPGEVSCFRCGQLGH 311
H+ D G+ C+ CG+ GH
Sbjct: 121 HM----ARDCTQGQ-KCYNCGETGH 140
>gi|300122852|emb|CBK23859.2| unnamed protein product [Blastocystis hominis]
Length = 158
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 66/154 (42%), Gaps = 30/154 (19%)
Query: 183 CYNCGEEGHMAVNC--RSAVKRKKP--CFVCGSLEHGVRQCS------KAQDCFICKKGG 232
CY CGE+GH A +C R ++P C++CG H R C + C+ C K G
Sbjct: 3 CYVCGEKGHKARDCPNRENSNNERPVKCYICGGFGHISRDCPSESGNRRETTCYNCGKPG 62
Query: 233 HRAKDCPDKHKSGFQNAQ----VCLKCGDSGHDMFSCRN-----------SYSLDDLKEV 277
H ++DCP++H + +C KC GH C N + D E
Sbjct: 63 HISRDCPEEHTHPVNPQRSRVIICRKCNQEGHIARDCPNDIVCHNCHQAGHVARDCPNEA 122
Query: 278 QCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
C+ C GHL + P E C +CGQ GH
Sbjct: 123 LCHNCNQPGHL-----ARNCPNEGVCRKCGQSGH 151
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 47/110 (42%), Gaps = 19/110 (17%)
Query: 177 DRGWQTCYNCGEEGHMAVNC--------RSAVKRKKPCFVCGSLEHGVRQCSKAQDCFIC 228
+R TCYNCG+ GH++ +C R C C H R C C C
Sbjct: 49 NRRETTCYNCGKPGHISRDCPEEHTHPVNPQRSRVIICRKCNQEGHIARDCPNDIVCHNC 108
Query: 229 KKGGHRAKDCPDK------HKSGF-----QNAQVCLKCGDSGHDMFSCRN 267
+ GH A+DCP++ ++ G N VC KCG SGH C N
Sbjct: 109 HQAGHVARDCPNEALCHNCNQPGHLARNCPNEGVCRKCGQSGHIARDCPN 158
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 224 DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
+C++C + GH+A+DCP++ S + C CG GH C + + +E CY C
Sbjct: 2 ECYVCGEKGHKARDCPNRENSNNERPVKCYICGGFGHISRDCPSESG--NRRETTCYNCG 59
Query: 284 CFGHL 288
GH+
Sbjct: 60 KPGHI 64
>gi|304434516|dbj|BAJ15435.1| VASA-like gene [Mytilus galloprovincialis]
Length = 745
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
Query: 183 CYNCGEEGHMAVNCRSA-----VKRKKPCFVCGSLEHGVRQCSKAQ---------DCFIC 228
C+ CGE GHM+ C SA + CF C H R+C A+ +CF C
Sbjct: 148 CFKCGESGHMSRECPSAEQGGGGGGNRNCFKCNESGHMARECPNAEQGGGGGRSGNCFKC 207
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSL 271
++ GH A+DCP+ G C KC + GH C + L
Sbjct: 208 QESGHMARDCPNSDSKG----NACFKCNEGGHMARDCPKAEGL 246
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 181 QTCYNCGEEGHMAVNCRSA-----VKRKKPCFVCGSLEHGVRQC----SKAQDCFICKKG 231
+ C+ C E GHMA C +A R CF C H R C SK CF C +G
Sbjct: 174 RNCFKCNESGHMARECPNAEQGGGGGRSGNCFKCQESGHMARDCPNSDSKGNACFKCNEG 233
Query: 232 GHRAKDCP 239
GH A+DCP
Sbjct: 234 GHMARDCP 241
>gi|58004799|gb|AAW62459.1| cellular nucleic acid binding protein mutant delta-RGG [synthetic
construct]
Length = 162
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 68/152 (44%), Gaps = 29/152 (19%)
Query: 183 CYNCGEEGHMAVNCRS--------AVKRKKP--CFVCGSLEHGVRQCSKAQD-CFICKKG 231
C+ CG GH A C + + P C+ CG H + C +D C+ C +G
Sbjct: 6 CFKCGRTGHWARECPTFSSSRGFQFISSSLPDICYRCGESGHLAKDCDLQEDACYNCGRG 65
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS-----YSLDDLKEVQ-------C 279
GH AKDC + K + Q C CG GH C ++ YS + +Q C
Sbjct: 66 GHIAKDCKEPRK---EREQCCYNCGKPGHLARDCEHADEQKCYSCGEFGHIQKDCTKVKC 122
Query: 280 YICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
Y C GH V I+ + EV+C+RCG+ GH
Sbjct: 123 YRCGDTGH---VAINCSKTSEVNCYRCGESGH 151
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ K R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 58 ACYNCGRGGHIAKDCKEPRKEREQCCYNCGKPGHLARDCEHADEQKCYSCGEFGHIQKDC 117
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CGD+GH +C + EV CY C GHL
Sbjct: 118 ---------TKVKCYRCGDTGHVAINCSKT------SEVNCYRCGESGHL 152
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C GH
Sbjct: 74 EPRKEREQCCYNCGKPGHLARDCEHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGDTGH 130
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 131 VAINCS-------KTSEVNCYRCGESGH 151
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 51/119 (42%), Gaps = 38/119 (31%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKS-GFQNAQ-----VCLKCGDSGHDMFSCRNSYSLDDLK 275
+ +CF C + GH A++CP S GFQ +C +CG+SGH C DL+
Sbjct: 3 SNECFKCGRTGHWARECPTFSSSRGFQFISSSLPDICYRCGESGHLAKDC-------DLQ 55
Query: 276 EVQCYICRCFGHL-------------CCVNISDAVPGEVS----------CFRCGQLGH 311
E CY C GH+ CC N PG ++ C+ CG+ GH
Sbjct: 56 EDACYNCGRGGHIAKDCKEPRKEREQCCYNCGK--PGHLARDCEHADEQKCYSCGEFGH 112
>gi|71418282|ref|XP_810805.1| universal minicircle sequence binding protein (UMSBP) [Trypanosoma
cruzi strain CL Brener]
gi|16225904|gb|AAL16022.1|AF420314_1 zinc finger protein PDZ5 [Trypanosoma cruzi]
gi|70875394|gb|EAN88954.1| universal minicircle sequence binding protein (UMSBP) [Trypanosoma
cruzi]
Length = 134
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 37/146 (25%)
Query: 178 RGWQTCYNCGEEGHMAVNCRS---AVKRKKPCFVCGSLEHGVRQCSKA-------QDCFI 227
RG + CYNCG+ GH++ C + V + C+ CG + H R+C + C+
Sbjct: 8 RGSRACYNCGQPGHLSRECPTRPPGVMGDRACYNCGRMGHLSRECPTRPPGVMGDRACYN 67
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGH 287
C + GH +++CP++ GF+ + CY C+ GH
Sbjct: 68 CGRMGHLSRECPNRPAGGFRG-------------------------VARGACYHCQQEGH 102
Query: 288 LCCVNISDAVP-GEVSCFRCGQLGHT 312
L + +A P GE +C+ CGQ GHT
Sbjct: 103 L-ARDCPNAPPGGERACYNCGQTGHT 127
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 179 GWQTCYNCGEEGHMAVNCRS---AVKRKKPCFVCGSLEHGVRQCSKAQ----------DC 225
G + CYNCG GH++ C + V + C+ CG + H R+C C
Sbjct: 35 GDRACYNCGRMGHLSRECPTRPPGVMGDRACYNCGRMGHLSRECPNRPAGGFRGVARGAC 94
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ C++ GH A+DCP+ G + C CG +GH +C
Sbjct: 95 YHCQQEGHLARDCPNAPPGG---ERACYNCGQTGHTSRAC 131
>gi|145519341|ref|XP_001445537.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412992|emb|CAK78140.1| unnamed protein product [Paramecium tetraurelia]
Length = 300
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 167 LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCF 226
L RY+ ++ CY C + GH C + + C C S +H CS CF
Sbjct: 180 LGANRYYQQ--NPFEYCYRCKQTGHQERQCTEQLNIQ--CNYCLSYKHVGDICSNV-SCF 234
Query: 227 ICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC-RNSYSLDD-LKEVQCYICRC 284
C + GHR +DC + Q Q C+ CG + H C Y+L + L +++C +CR
Sbjct: 235 RCNQMGHRKQDCKFQ-----QRLQQCINCGKNTHKEQDCGILIYNLHNFLDQIECLVCRN 289
Query: 285 FGHLCCVNI 293
+GH+ C+NI
Sbjct: 290 YGHINCLNI 298
>gi|26347241|dbj|BAC37269.1| unnamed protein product [Mus musculus]
Length = 171
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 25/134 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ + C+ CG H + C + Q C+ C K GH A+D
Sbjct: 47 CYRCGEPGHLAKDCD--LQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 104
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 105 CD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSK 146
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 147 TSEVNCYRCGESGH 160
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 63/152 (41%), Gaps = 35/152 (23%)
Query: 183 CYNCGEEGHMAVNCRSA----------------VKRKKP--CFVCGSLEHGVRQCSKAQD 224
C+ CG GH A C + V P C+ CG H + C +D
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGEPGHLAKDCDLQED 65
Query: 225 --CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYIC 282
C+ C +GGH AKDC + + + Q C CG GH C D E +CY C
Sbjct: 66 EACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSC 116
Query: 283 RCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
FGH+ D +V C+RCG+ GH +
Sbjct: 117 GEFGHI----QKDCT--KVKCYRCGETGHVAI 142
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 18/111 (16%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKD 237
+ CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KD
Sbjct: 66 EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKD 125
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C C +CG++GH +C + EV CY C GHL
Sbjct: 126 C---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 161
>gi|146104100|ref|XP_001469726.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|398024576|ref|XP_003865449.1| hypothetical protein, conserved [Leishmania donovani]
gi|134074096|emb|CAM72838.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|322503686|emb|CBZ38772.1| hypothetical protein, conserved [Leishmania donovani]
Length = 566
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 20/115 (17%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
CY C + GHM C + C+ CG+ H + C CF C GHR+ +CP +
Sbjct: 128 CYQCHQLGHMMTTCP-----QTRCYNCGTFGHSSQICHSKPHCFHCSHSGHRSSECPMRS 182
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC----------RNSYSLDDLKEVQCYICRCFGH 287
K +VC +C + GH+ +C R + + EV C +C GH
Sbjct: 183 K-----GRVCYQCNEPGHEAANCPQGQLCRMCHRPGHFVAHCPEVVCNLCHVKGH 232
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 28/123 (22%)
Query: 209 CGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQ----------------VC 252
C + H R C K + C +CK+ GH +DCP ++ + VC
Sbjct: 48 CKTRGHLRRNCPKIK-CNLCKRLGHYRRDCPQDASKRVRSVEGAPHEEVNLDEEYRWSVC 106
Query: 253 LKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHT 312
CG S H +C Y + ++CY C GH+ P + C+ CG GH+
Sbjct: 107 RHCGSSRHIQANCPVRY-----QALECYQCHQLGHM-----MTTCP-QTRCYNCGTFGHS 155
Query: 313 GLV 315
+
Sbjct: 156 SQI 158
>gi|441674301|ref|XP_004092503.1| PREDICTED: zinc finger CCHC domain-containing protein 13 [Nomascus
leucogenys]
Length = 170
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 62/135 (45%), Gaps = 26/135 (19%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-----KAQDCFICKKGGHRAK 236
TCY CGE G A NC V C+ CG H + C + Q C+ C + GH A+
Sbjct: 46 TCYCCGESGRHAKNC---VLLGNICYNCGRSGHIAKDCKEPKRERHQHCYNCGRLGHLAR 102
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDA 296
DC Q Q C CG GH D +V+CY C GH V+I+ +
Sbjct: 103 DCDR------QKEQKCYSCGKLGHIQ---------KDCAQVKCYRCGEIGH---VSINCS 144
Query: 297 VPGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 145 KASEVTCYRCGKSGH 159
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 60/124 (48%), Gaps = 25/124 (20%)
Query: 183 CYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQC--SKAQDCFICKKGGHRAKDCP 239
CYNCG GH+A +C+ + R + C+ CG L H R C K Q C+ C K GH KDC
Sbjct: 67 CYNCGRSGHIAKDCKEPKRERHQHCYNCGRLGHLARDCDRQKEQKCYSCGKLGHIQKDC- 125
Query: 240 DKHKSGFQNAQV-CLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVP 298
AQV C +CG+ GH +C + EV CY C GHL + P
Sbjct: 126 ---------AQVKCYRCGEIGHVSINCSKA------SEVTCYRCGKSGHL-----AKECP 165
Query: 299 GEVS 302
EV+
Sbjct: 166 SEVT 169
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG GH+A +C ++++ C+ CG L H + C++ + C+ C + GH
Sbjct: 82 EPKRERHQHCYNCGRLGHLARDCDR--QKEQKCYSCGKLGHIQKDCAQVK-CYRCGEIGH 138
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
+ +C + C +CG SGH
Sbjct: 139 VSINCSK------ASEVTCYRCGKSGH 159
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 7/63 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--CFICKKGGHRAKDC 238
Q CY+CG+ GH+ +C + VK C+ CG + H CSKA + C+ C K GH AK+C
Sbjct: 110 QKCYSCGKLGHIQKDC-AQVK----CYRCGEIGHVSINCSKASEVTCYRCGKSGHLAKEC 164
Query: 239 PDK 241
P +
Sbjct: 165 PSE 167
>gi|241780604|ref|XP_002400201.1| E3 ubiquitin ligase, putative [Ixodes scapularis]
gi|215510686|gb|EEC20139.1| E3 ubiquitin ligase, putative [Ixodes scapularis]
Length = 181
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-AQDCFICKKGGHRAKDCPD 240
+CYNCG+ GH+A C+ +++K C++C H R C + + C++C K GH ++DCP
Sbjct: 52 SCYNCGKMGHIARECK---EQEKTCYICHKQGHISRDCEQDERRCYLCGKLGHISRDCP- 107
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGE 300
S ++ + C CG GH C + D + +V CY C GH+ +
Sbjct: 108 ---SSERDDRKCYNCGHLGHISRDCPEAGGNDTVADV-CYRCNERGHI--ARNCRSTRTN 161
Query: 301 VSCFRCGQLGH 311
C+ CG++GH
Sbjct: 162 NRCYHCGEVGH 172
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 17/114 (14%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAK 236
+TCY C ++GH++ +C +R C++CG L H R C ++ C+ C GH ++
Sbjct: 71 KTCYICHKQGHISRDCEQDERR---CYLCGKLGHISRDCPSSERDDRKCYNCGHLGHISR 127
Query: 237 DCPDKHKSGFQN--AQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
DCP+ +G + A VC +C + GH +CR++ + + +CY C GHL
Sbjct: 128 DCPE---AGGNDTVADVCYRCNERGHIARNCRSTRTNN-----RCYHCGEVGHL 173
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 61/146 (41%), Gaps = 31/146 (21%)
Query: 173 FDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD---CFICK 229
+ P R + CY C GH A +C+ A R C+ C H + C D C+ C
Sbjct: 3 YKAPIR--EKCYKCNRIGHFARDCKEAEDR---CYRCNGTGHISKDCQHGPDEMSCYNCG 57
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC 289
K GH A++C ++ K+ C C GH C + E +CY+C GH
Sbjct: 58 KMGHIARECKEQEKT-------CYICHKQGHISRDC-------EQDERRCYLCGKLGH-- 101
Query: 290 CVNISDAVPG----EVSCFRCGQLGH 311
IS P + C+ CG LGH
Sbjct: 102 ---ISRDCPSSERDDRKCYNCGHLGH 124
>gi|255947154|ref|XP_002564344.1| Pc22g03000 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591361|emb|CAP97588.1| Pc22g03000 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 487
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKG 231
DR C NC GH +CR + K C CGS+EH +C++ + +C C +
Sbjct: 303 DRTEIKCSNCDGVGHRVRDCRQQRRNKHGCRNCGSVEHIASECTEPRSAADVECRKCNET 362
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC-- 289
GH AKDCP+ G + C CG H C D+ V C C GH
Sbjct: 363 GHFAKDCPNVADRG---PRTCRNCGSEDHIARDCDQPR---DVSTVTCRNCEKTGHYSRD 416
Query: 290 CVNISDAVPGEVSCFRCGQLGHT 312
C D +V C CG++GHT
Sbjct: 417 CDQPKDW--SKVQCKNCGEMGHT 437
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAK 236
+ CYNCG+EGH C ++ CF CG H +C+K + C IC+K GH A
Sbjct: 65 RACYNCGQEGHSKAEC-PEPRKTGSCFNCGQEGHSKSECTKPRVFKGTCRICEKEGHPAV 123
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
DCP++ VC C GH C+ + D
Sbjct: 124 DCPER------PPDVCKNCQTEGHKTMECKENRKFD 153
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKR-KKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGHRAK 236
C C E GH A +C + R + C CGS +H R C + +D C C+K GH ++
Sbjct: 356 CRKCNETGHFAKDCPNVADRGPRTCRNCGSEDHIARDCDQPRDVSTVTCRNCEKTGHYSR 415
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKE 276
DC D+ K + Q C CG+ GH + CR D E
Sbjct: 416 DC-DQPKD-WSKVQ-CKNCGEMGHTVVRCRQPKDKDPQDE 452
>gi|148666815|gb|EDK99231.1| cellular nucleic acid binding protein, isoform CRA_d [Mus musculus]
Length = 204
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 81 CYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 137
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 138 CDHA------DEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSK 179
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 180 TSEVNCYRCGESGH 193
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 63/151 (41%), Gaps = 34/151 (22%)
Query: 183 CYNCGEEGHMAVNCRSA----------------VKRKKP--CFVCGSLEHGVRQCSKAQD 224
C+ CG GH A C + V P C+ CG H + C +D
Sbjct: 40 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 99
Query: 225 -CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C +GGH AKDC + + + Q C CG GH C D E +CY C
Sbjct: 100 ACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCG 150
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
FGH+ D +V C+RCG+ GH +
Sbjct: 151 EFGHI----QKDCT--KVKCYRCGETGHVAI 175
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 100 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 159
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 160 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 194
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 11/81 (13%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH A +C
Sbjct: 123 QCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGHVAINCS- 178
Query: 241 KHKSGFQNAQV-CLKCGDSGH 260
+ ++V C +CG+SGH
Sbjct: 179 ------KTSEVNCYRCGESGH 193
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 50/127 (39%), Gaps = 46/127 (36%)
Query: 222 AQDCFICKKGGHRAKDCPD---------KHKSGFQNAQ-----VCLKCGDSGHDMFSCRN 267
+ +CF C + GH A++CP GFQ +C +CG+SGH C
Sbjct: 37 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC-- 94
Query: 268 SYSLDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----------CF 304
DL+E CY C GH+ CC N PG ++ C+
Sbjct: 95 -----DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDHADEQKCY 147
Query: 305 RCGQLGH 311
CG+ GH
Sbjct: 148 SCGEFGH 154
>gi|403216232|emb|CCK70729.1| hypothetical protein KNAG_0F00600 [Kazachstania naganishii CBS
8797]
Length = 157
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 60/134 (44%), Gaps = 15/134 (11%)
Query: 183 CYNCGEEGHMAVNCR-SAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
CYNCG+ GH+ C K C+ CG H +CS Q CF C + GH +KDC +
Sbjct: 25 CYNCGQPGHVQSECTLPRTVEHKQCYNCGETGHVKSECS-VQRCFNCNQTGHISKDCTEP 83
Query: 242 HKSGFQNA----QVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
K Q A C KCG H C+ ++ +CY C FGH+
Sbjct: 84 RKPRAQAAGGRGMSCYKCGGPNHLARDCQQ-------EDTKCYSCGNFGHI--SRDCPDG 134
Query: 298 PGEVSCFRCGQLGH 311
PG+ C+ C Q GH
Sbjct: 135 PGDKVCYNCNQSGH 148
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
Query: 181 QTCYNCGEEGHMAVNC--------RSAVKRKKPCFVCGSLEHGVRQCSKA-QDCFICKKG 231
Q C+NC + GH++ +C ++A R C+ CG H R C + C+ C
Sbjct: 65 QRCFNCNQTGHISKDCTEPRKPRAQAAGGRGMSCYKCGGPNHLARDCQQEDTKCYSCGNF 124
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
GH ++DCPD +VC C SGH
Sbjct: 125 GHISRDCPDG-----PGDKVCYNCNQSGH 148
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 168 RGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--- 224
R PR RG +CY CG H+A +C+ + C+ CG+ H R C
Sbjct: 84 RKPRAQAAGGRGM-SCYKCGGPNHLARDCQ---QEDTKCYSCGNFGHISRDCPDGPGDKV 139
Query: 225 CFICKKGGHRAKDCPD 240
C+ C + GH ++DCP+
Sbjct: 140 CYNCNQSGHISRDCPE 155
>gi|154345720|ref|XP_001568797.1| universal minicircle sequence binding protein [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134066139|emb|CAM43929.1| universal minicircle sequence binding protein [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|449310608|gb|AGE92531.1| universal minicircle sequence binding protein [Leishmania
braziliensis]
Length = 115
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 13/87 (14%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-------AQDCFICKKGGH 233
++CYNCGE GHM+ +C S ++ K CF CGS EH R+C+ + C+ C GH
Sbjct: 26 RSCYNCGETGHMSRDCPSE-RKPKSCFNCGSTEHLSRECTNEAKAGADTRSCYNCGGTGH 84
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
++DCP++ K + C CG + H
Sbjct: 85 MSRDCPNERK-----PKSCYNCGSTEH 106
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKDC 238
TCY CGE GHM+ +C V + C+ CG H R C K + CF C H +++C
Sbjct: 5 TCYKCGEAGHMSRSC-PRVAATRSCYNCGETGHMSRDCPSERKPKSCFNCGSTEHLSREC 63
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
++ K+G + + C CG +GH C N + K CY C HL
Sbjct: 64 TNEAKAG-ADTRSCYNCGGTGHMSRDCPN-----ERKPKSCYNCGSTEHL 107
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKR---KKPCFVCGSLEHGVRQCS---KAQDCFIC 228
P +R ++C+NCG H++ C + K + C+ CG H R C K + C+ C
Sbjct: 42 PSERKPKSCFNCGSTEHLSRECTNEAKAGADTRSCYNCGGTGHMSRDCPNERKPKSCYNC 101
Query: 229 KKGGHRAKDCPDKH 242
H +++CPD+H
Sbjct: 102 GSTEHLSRECPDRH 115
>gi|401420036|ref|XP_003874507.1| universal minicircle sequence binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490743|emb|CBZ26007.1| universal minicircle sequence binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 182
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 13/87 (14%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-------AQDCFICKKGGH 233
++CYNCGE GHM+ +C S ++ K C+ CGS EH R+C+ + C+ C GH
Sbjct: 93 RSCYNCGETGHMSRDCPSE-RKPKSCYNCGSTEHLSRECTNEAKAGADTRSCYNCGGTGH 151
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
++DCP++ K + C CG + H
Sbjct: 152 MSRDCPNERK-----PKSCYNCGSTEH 173
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 55/111 (49%), Gaps = 12/111 (10%)
Query: 182 TCYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKD 237
TCY CGE GHM+ +C R+A R C+ CG H R C K + C+ C H +++
Sbjct: 72 TCYKCGEAGHMSRSCPRAAATRS--CYNCGETGHMSRDCPSERKPKSCYNCGSTEHLSRE 129
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C ++ K+G + + C CG +GH C N + K CY C HL
Sbjct: 130 CTNEAKAG-ADTRSCYNCGGTGHMSRDCPN-----ERKPKSCYNCGSTEHL 174
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKR---KKPCFVCGSLEHGVRQCS---KAQDCFIC 228
P +R ++CYNCG H++ C + K + C+ CG H R C K + C+ C
Sbjct: 109 PSERKPKSCYNCGSTEHLSRECTNEAKAGADTRSCYNCGGTGHMSRDCPNERKPKSCYNC 168
Query: 229 KKGGHRAKDCPDKH 242
H +++CPD+H
Sbjct: 169 GSTEHLSRECPDRH 182
>gi|380489650|emb|CCF36563.1| cellular nucleic acid-binding protein [Colletotrichum higginsianum]
Length = 275
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 64/138 (46%), Gaps = 19/138 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ------DCFICKKGGHRA 235
TCYNCGEEGH +C + K C CG H V +C + + +C C + GH +
Sbjct: 99 TCYNCGEEGHRVRDCPTPRVDKFACKNCGQSGHKVSECPEPRKAGADVECNKCHEMGHFS 158
Query: 236 KDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNI 293
+DCP + G + C CG+ GH C + ++++C C GHL C
Sbjct: 159 RDCP---QGGGGGGRACHNCGNEGHMSREC------PEPRKIKCRNCDEEGHLSKDCDKP 209
Query: 294 SDAVPGEVSCFRCGQLGH 311
D + C CG++GH
Sbjct: 210 IDV--SRIKCNNCGEMGH 225
>gi|348540579|ref|XP_003457765.1| PREDICTED: cellular nucleic acid-binding protein-like isoform 2
[Oreochromis niloticus]
Length = 170
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 38/153 (24%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP------------------CFVCGSLEHGVRQCSKAQD 224
C+ CG GH NC S + + C+ CG L H R C + +D
Sbjct: 6 CFGCGHSGHWVKNCPSGGRGRGKGRGRGKGDTHHQTSMNLFCYRCGELGHVARDCERTED 65
Query: 225 -CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C + H ++DC + K + Q+C CG +GH +C +++ E +CY C
Sbjct: 66 ACYNCGREDHISRDCKEPKK---EREQLCYNCGKAGHMARNCNHAH------EQKCYSCG 116
Query: 284 CFGHL--CCVNISDAVPGEVSCFRCGQLGHTGL 314
FGH+ CC +V C+RCG++GH +
Sbjct: 117 SFGHIQKCCE--------KVKCYRCGEIGHVAV 141
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C + + C+ CG +H R C + Q C+ C K GH A++
Sbjct: 47 CYRCGELGHVARDCE---RTEDACYNCGREDHISRDCKEPKKEREQLCYNCGKAGHMARN 103
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C H+ Q C CG GH C ++V+CY C GH V + +
Sbjct: 104 CNHAHE------QKCYSCGSFGHIQKCC---------EKVKCYRCGEIGH---VAVHCSK 145
Query: 298 PGEVSCFRCGQLGH 311
E++C+ G+ GH
Sbjct: 146 ASELNCYNYGKSGH 159
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GHMA NC A ++K C+ CGS H +++C + C+ C + GH
Sbjct: 82 EPKKEREQLCYNCGKAGHMARNCNHAHEQK--CYSCGSFGH-IQKCCEKVKCYRCGEIGH 138
Query: 234 RAKDC 238
A C
Sbjct: 139 VAVHC 143
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 12/99 (12%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGH 233
+R CYNCG E H++ +C+ K R++ C+ CG H R C+ A Q C+ C GH
Sbjct: 61 ERTEDACYNCGREDHISRDCKEPKKEREQLCYNCGKAGHMARNCNHAHEQKCYSCGSFGH 120
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
K C +K K C +CG+ GH C + L+
Sbjct: 121 IQK-CCEKVK--------CYRCGEIGHVAVHCSKASELN 150
>gi|212721230|ref|NP_001132383.1| actin depolymerizing factor [Zea mays]
gi|194694234|gb|ACF81201.1| unknown [Zea mays]
gi|414585937|tpg|DAA36508.1| TPA: actin depolymerizing factor [Zea mays]
Length = 276
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 11/115 (9%)
Query: 206 CFVCGSLEHGVRQCS------KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
CF+C S +H + C K + C +C++ GH K+CPDK + + C CG+SG
Sbjct: 71 CFICKSTDHVAKACPEKALWDKKKICLLCRERGHSLKNCPDKSEGNLM--KFCYNCGESG 128
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
H + C C+IC GHL C N P C CG++ H
Sbjct: 129 HSLSKCPKPIENGGTNFASCFICNQQGHLSKNCPENKHGIYPKGGCCKVCGEVTH 183
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 181 QTCYNCGEEGHMAVNC--RSAVKRKKPCFVCGSLEHGVRQCSKA--------QDCFICKK 230
+ C C E GH NC +S K C+ CG H + +C K CFIC +
Sbjct: 94 KICLLCRERGHSLKNCPDKSEGNLMKFCYNCGESGHSLSKCPKPIENGGTNFASCFICNQ 153
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
GH +K+CP+ + C CG+ H C N
Sbjct: 154 QGHLSKNCPENKHGIYPKGGCCKVCGEVTHLARHCPN 190
>gi|429862592|gb|ELA37234.1| zinc knuckle transcription factor [Colletotrichum gloeosporioides
Nara gc5]
Length = 460
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 19/137 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHRAK 236
TCYNCGEEGH +C + K C CG H V +C++ + +C C + GH +
Sbjct: 285 TCYNCGEEGHRVRDCPTPRIDKFACKNCGQSRHKVSECTEPRSAEGVECNKCNEMGHFGR 344
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNIS 294
DCP G + C CG GH C + ++++C C GH C
Sbjct: 345 DCPTAGGGG----RSCHNCGQEGHISKECT------EPRKLKCRNCDEEGHHSRDCDKPQ 394
Query: 295 DAVPGEVSCFRCGQLGH 311
D + C CG++GH
Sbjct: 395 DVT--RIKCMNCGEMGH 409
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKR-KKPCFVCGSLEHGVRQCSKAQD--CFICKKGGHRAKDC 238
C+NCG++GH +C K C CG H R C A C C + GH KDC
Sbjct: 44 ACFNCGQDGHNKADCPEPAKPFDGECKGCGQQGHMRRDCPDAPPMACRSCGEEGHIRKDC 103
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
P+K +VC C + GH + +C N +D
Sbjct: 104 PNK------PPEVCRNCHEEGHLVVNCENPRKID 131
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGH 233
G ++C+NCG+EGH++ C RK C C H R C K QD C C + GH
Sbjct: 352 GGRSCHNCGQEGHISKECTEP--RKLKCRNCDEEGHHSRDCDKPQDVTRIKCMNCGEMGH 409
Query: 234 RAKDCPD 240
+ CP+
Sbjct: 410 KKYKCPN 416
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 43/109 (39%), Gaps = 21/109 (19%)
Query: 223 QDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH----------DMFSCRN----S 268
Q C C + GH AK CP + C CG+ GH D F+C+N
Sbjct: 257 QKCNNCDELGHTAKACPQDPNEKVRVTITCYNCGEEGHRVRDCPTPRIDKFACKNCGQSR 316
Query: 269 YSLDDLKE------VQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
+ + + E V+C C GH + A G SC CGQ GH
Sbjct: 317 HKVSECTEPRSAEGVECNKCNEMGHF-GRDCPTAGGGGRSCHNCGQEGH 364
>gi|157877134|ref|XP_001686898.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68129973|emb|CAJ09281.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 566
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 20/115 (17%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
CY C + GHM C + C+ CG+ H + C CF C GHR+ +CP +
Sbjct: 128 CYQCHQLGHMMTTCP-----QTRCYNCGTFGHSSQICHSKPHCFHCSHSGHRSSECPMRS 182
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC----------RNSYSLDDLKEVQCYICRCFGH 287
K +VC +C + GH+ +C R + + EV C +C GH
Sbjct: 183 K-----GRVCYQCNEPGHEAANCPQGQLCRMCHRPGHFVAHCPEVVCNLCHLKGH 232
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 55/139 (39%), Gaps = 23/139 (16%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGG--HRAK 236
G C NC GH+ NC K C +C L H R C + + GG H
Sbjct: 41 GAVVCDNCKTRGHLRRNC-----PKIKCNLCKRLGHYRRDCPQDASKRVRSVGGAPHEEV 95
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDA 296
+ ++++ VC CG S H +C Y + ++CY C GH+
Sbjct: 96 NLDEEYR-----WSVCRNCGSSRHIQANCPVRY-----QALECYQCHQLGHM-----MTT 140
Query: 297 VPGEVSCFRCGQLGHTGLV 315
P + C+ CG GH+ +
Sbjct: 141 CP-QTRCYNCGTFGHSSQI 158
>gi|327348756|gb|EGE77613.1| zinc knuckle transcription factor [Ajellomyces dermatitidis ATCC
18188]
Length = 485
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKD 237
C NCG+ GH A +C K CF CG H +C+K + C IC+K GH A +
Sbjct: 41 ACRNCGQSGHFARDCTEPRKATGACFNCGEEGHNKAECTKPRVFKGHCRICEKEGHPASE 100
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
CP+K A VC C + GH C + D
Sbjct: 101 CPEK------PADVCKNCKEEGHKTMECTQNRKFD 129
>gi|85098402|ref|XP_960605.1| hypothetical protein NCU08923 [Neurospora crassa OR74A]
gi|28922111|gb|EAA31369.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 183
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 72/159 (45%), Gaps = 29/159 (18%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKAQ-------DC 225
D P++G CYNCG EGHM+ +C K + C+ CG H R CS++ +C
Sbjct: 25 DCPNKGAAKCYNCGNEGHMSRDCPEGPKDNARTCYRCGQTGHISRDCSQSGGGQSSGAEC 84
Query: 226 FICKKGGHRAKDCPD---KHKSGFQNA----------QVCLKCGDSGHDMFSCRNSYSLD 272
+ C + GH A++C + G+QN+ + C CG GH S D
Sbjct: 85 YKCGEVGHIARNCSKGGASYGGGYQNSGYGGGFGGPQKTCYSCGGIGH--------MSRD 136
Query: 273 DLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
+ +CY C GH D+ GE C++C Q GH
Sbjct: 137 CVNGSKCYNCGESGHFSRDCPKDSGSGEKICYKCQQPGH 175
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 20/100 (20%)
Query: 183 CYNCGEEGHMAVNCRSA-----------------VKRKKPCFVCGSLEHGVRQCSKAQDC 225
CY CGE GH+A NC +K C+ CG + H R C C
Sbjct: 84 CYKCGEVGHIARNCSKGGASYGGGYQNSGYGGGFGGPQKTCYSCGGIGHMSRDCVNGSKC 143
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ C + GH ++DCP SG ++C KC GH C
Sbjct: 144 YNCGESGHFSRDCPKDSGSG---EKICYKCQQPGHVQSQC 180
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 69/159 (43%), Gaps = 31/159 (19%)
Query: 173 FDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-----AQDCFI 227
F P +G + C+ CG+ H A +C + K C+ CG+ H R C + A+ C+
Sbjct: 4 FAAP-QGTRACFTCGQTTHQARDCPNKGAAK--CYNCGNEGHMSRDCPEGPKDNARTCYR 60
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC-----------RNSYSLDDLKE 276
C + GH ++DC A+ C KCG+ GH +C +NS
Sbjct: 61 CGQTGHISRDCSQSGGGQSSGAE-CYKCGEVGHIARNCSKGGASYGGGYQNSGYGGGFGG 119
Query: 277 VQ--CYICRCFGHLC--CVNISDAVPGEVSCFRCGQLGH 311
Q CY C GH+ CVN S C+ CG+ GH
Sbjct: 120 PQKTCYSCGGIGHMSRDCVNGSK-------CYNCGESGH 151
Score = 37.4 bits (85), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGHRA 235
+TCY+CG GHM+ +C + K C+ CG H R C K C+ C++ GH
Sbjct: 122 KTCYSCGGIGHMSRDCVNGSK----CYNCGESGHFSRDCPKDSGSGEKICYKCQQPGHVQ 177
Query: 236 KDCP 239
CP
Sbjct: 178 SQCP 181
>gi|395863010|ref|XP_003803706.1| PREDICTED: cellular nucleic acid-binding protein-like [Otolemur
garnettii]
Length = 170
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 64/134 (47%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-----KAQDCFICKKGGHRAKD 237
CY CGE GH A NC + C+ CG H + C+ + Q C+ C + GH A+D
Sbjct: 47 CYRCGESGHHAKNCDLL---EDICYNCGRSGHIAKDCNEPKREREQCCYSCGRPGHLARD 103
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C Q Q C CG+ GH D +V+CY C GH+ +N S A
Sbjct: 104 CD------HQEEQKCYSCGEFGHIQ---------KDCTQVKCYRCGETGHV-AINCSKAT 147
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 148 --EVNCYRCGESGH 159
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 62/151 (41%), Gaps = 34/151 (22%)
Query: 183 CYNCGEEGHMAVNCR------------------SAVKRKKPCFVCGSLEHGVRQCSKAQD 224
C+ CG GH A C S+ C+ CG H + C +D
Sbjct: 6 CFKCGRSGHWARGCPRGGARGRGARGRGRGSPCSSTTFSDICYRCGESGHHAKNCDLLED 65
Query: 225 -CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C + GH AKDC + + + Q C CG GH C D +E +CY C
Sbjct: 66 ICYNCGRSGHIAKDCNEPKR---EREQCCYSCGRPGHLARDC------DHQEEQKCYSCG 116
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
FGH+ D +V C+RCG+ GH +
Sbjct: 117 EFGHI----QKDCT--QVKCYRCGETGHVAI 141
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 9/80 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
Q CY+CG GH+A +C ++K C+ CG H + C++ + C+ C + GH A +C
Sbjct: 89 QCCYSCGRPGHLARDCDHQEEQK--CYSCGEFGHIQKDCTQVK-CYRCGETGHVAINCSK 145
Query: 241 KHKSGFQNAQVCLKCGDSGH 260
+ C +CG+SGH
Sbjct: 146 ATEVN------CYRCGESGH 159
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--CFICKKGGHRAKDC 238
Q CY+CGE GH+ +C + VK C+ CG H CSKA + C+ C + GH A++C
Sbjct: 110 QKCYSCGEFGHIQKDC-TQVK----CYRCGETGHVAINCSKATEVNCYRCGESGHLAREC 164
Query: 239 P 239
P
Sbjct: 165 P 165
>gi|154345718|ref|XP_001568796.1| putative universal minicircle sequence binding protein [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134066138|emb|CAM43928.1| putative universal minicircle sequence binding protein [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|449310630|gb|AGE92542.1| universal minicircle sequence binding protein [Leishmania
braziliensis]
Length = 115
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 13/87 (14%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-------AQDCFICKKGGH 233
++CYNCGE GHM+ +C S ++ K CF CGS EH R+C+ + C+ C GH
Sbjct: 26 RSCYNCGETGHMSRDCPSE-RKPKSCFNCGSTEHLSRECTNEAKAGADTRSCYNCGGTGH 84
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
++DCP++ K + C CG + H
Sbjct: 85 LSRDCPNERK-----PKSCYNCGSTEH 106
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKDC 238
TCY CGE GHM+ +C V + C+ CG H R C K + CF C H +++C
Sbjct: 5 TCYKCGEAGHMSRSC-PRVAATRSCYNCGETGHMSRDCPSERKPKSCFNCGSTEHLSREC 63
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
++ K+G + + C CG +GH C N + K CY C HL
Sbjct: 64 TNEAKAG-ADTRSCYNCGGTGHLSRDCPN-----ERKPKSCYNCGSTEHL 107
>gi|10185395|emb|CAC08539.1| CCHC zinc finger protein [Trypanosoma brucei]
Length = 140
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 64/136 (47%), Gaps = 19/136 (13%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
+TCYNCG GHM+ C +A G++ G + C+ C + H ++DCP+
Sbjct: 11 RTCYNCGHAGHMSRECPNARSG-------GNMGGG-------RSCYNCGQPDHISRDCPN 56
Query: 241 KHKSG-FQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQ-CYICRCFGHLC--CVNIS-D 295
G + C CG GH C N+ S ++ + CY C+ GH+ C N D
Sbjct: 57 ARTGGNMGGGRSCYNCGRPGHISRDCPNARSGGNMGGGRACYHCQQEGHIARECPNAPLD 116
Query: 296 AVPGEVSCFRCGQLGH 311
A G +CF CGQ GH
Sbjct: 117 AAAGGRACFNCGQPGH 132
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 179 GWQTCYNCGEEGHMAVNCRSA-----VKRKKPCFVCGSLEHGVRQCSKAQD--------- 224
G ++CYNCG+ H++ +C +A + + C+ CG H R C A+
Sbjct: 37 GGRSCYNCGQPDHISRDCPNARTGGNMGGGRSCYNCGRPGHISRDCPNARSGGNMGGGRA 96
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
C+ C++ GH A++CP+ + C CG GH +C
Sbjct: 97 CYHCQQEGHIARECPNAPLDAAAGGRACFNCGQPGHLSRAC 137
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 13/76 (17%)
Query: 179 GWQTCYNCGEEGHMAVNCRSA-----VKRKKPCFVCGSLEHGVRQCSKA--------QDC 225
G ++CYNCG GH++ +C +A + + C+ C H R+C A + C
Sbjct: 65 GGRSCYNCGRPGHISRDCPNARSGGNMGGGRACYHCQQEGHIARECPNAPLDAAAGGRAC 124
Query: 226 FICKKGGHRAKDCPDK 241
F C + GH ++ CP K
Sbjct: 125 FNCGQPGHLSRACPVK 140
>gi|384247042|gb|EIE20530.1| hypothetical protein COCSUDRAFT_10924, partial [Coccomyxa
subellipsoidea C-169]
Length = 102
Score = 59.7 bits (143), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 52/131 (39%), Gaps = 32/131 (24%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C+ CG +GHMA +C + +R++PC +CG H QCS C C+ G
Sbjct: 1 CFKCGGQGHMARDCPNE-ERQRPCHLCGQFGHTRYQCSNTLLCIHCRAEG---------- 49
Query: 243 KSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVS 302
C Y DL++ C C GHLCC P + S
Sbjct: 50 ---------------------GCTGEYLEGDLRQALCVACGRRGHLCCQLAEGLPPRKTS 88
Query: 303 CFRCGQLGHTG 313
C+ CG+ GH
Sbjct: 89 CYNCGEGGHVA 99
>gi|302143876|emb|CBI22737.3| unnamed protein product [Vitis vinifera]
Length = 279
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 206 CFVCGSLEHGVRQCS-KAQ-----DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
CF+C + +H + C KAQ C +C++ GH K+CPDK + + ++C CG++G
Sbjct: 79 CFICKAKDHIAKHCPEKAQWERHKICLLCRQRGHSLKNCPDKGEEKL-DKKLCYNCGETG 137
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
H + +C K C+IC GHL C N P C CG + H
Sbjct: 138 HSLANCPQPLQEGGTKFASCFICNERGHLSKNCPKNSHGIYPKGGCCKICGGVTH 192
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 20/97 (20%)
Query: 176 PDRGWQ-----TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKK 230
PD+G + CYNCGE GH NC ++ E G +K CFIC +
Sbjct: 118 PDKGEEKLDKKLCYNCGETGHSLANCPQPLQ-----------EGG----TKFASCFICNE 162
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
GH +K+CP + C CG H C N
Sbjct: 163 RGHLSKNCPKNSHGIYPKGGCCKICGGVTHLAKDCPN 199
>gi|47223220|emb|CAG11355.1| unnamed protein product [Tetraodon nigroviridis]
Length = 167
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 28/145 (19%)
Query: 183 CYNCGEEGHMAVNCRSA------------VKRKKPCFVCGSLEHGVRQCSKAQD-CFICK 229
C+ CG GH NC ++ ++ C+ CG H V+ C + +D C+ C
Sbjct: 9 CFGCGRPGHWVKNCPTSSGLRGRGPRGRGRGKELFCYRCGDQGHMVKDCDQTEDSCYNCH 68
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC 289
K GH ++DC + + + Q C CG +GH C D E +C+ C GH+
Sbjct: 69 KSGHISRDCKEPKR---EREQQCYNCGKAGHMAREC------DHANEQKCFTCGTLGHI- 118
Query: 290 CVNISDAVPGEVSCFRCGQLGHTGL 314
+ +V C+RCG +GH L
Sbjct: 119 -----QKLCDKVKCYRCGGIGHVAL 138
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 26/135 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CG++GHM +C + + C+ C H R C + Q C+ C K GH A++
Sbjct: 44 CYRCGDQGHMVKDCD---QTEDSCYNCHKSGHISRDCKEPKREREQQCYNCGKAGHMARE 100
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C N Q C CG GH C +V+CY C GH V + +
Sbjct: 101 CD------HANEQKCFTCGTLGHIQKLC---------DKVKCYRCGGIGH---VALQCSK 142
Query: 298 PGEVSCFRCGQLGHT 312
E +C+ CG+ GH
Sbjct: 143 ASETTCYNCGKAGHV 157
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GHMA C A ++K CF CG+L H + C K + C+ C GH
Sbjct: 79 EPKREREQQCYNCGKAGHMARECDHANEQK--CFTCGTLGHIQKLCDKVK-CYRCGGIGH 135
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
A C ++ C CG +GH
Sbjct: 136 VALQCSKASET------TCYNCGKAGH 156
>gi|378732167|gb|EHY58626.1| cellular nucleic acid-binding protein [Exophiala dermatitidis
NIH/UT8656]
Length = 464
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA--QDCFICKKG 231
D P+R QTC NCG E HMA C + K+ C CG +H R+C A Q C IC
Sbjct: 310 DCPNREKQTCRNCGAEDHMARECPD--REKRTCRKCGEEDHIARECPNAPKQTCNICDAE 367
Query: 232 GHRAKDCPDKHKSGFQNAQ-----VCLKCGDSGHDMFSC 265
H AKDCP K + G + + VC C GH C
Sbjct: 368 DHFAKDCPKKGEPGLRPRRDWSQVVCSLCEQKGHGRARC 406
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 61/143 (42%), Gaps = 27/143 (18%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP---CFVCGSLEHGVRQCS--KAQDCFICKKGGHRAK 236
TCY CGE+GH +C +RKKP C +C + +H + C + Q C C H A+
Sbjct: 273 TCYLCGEQGHRVRDCTQ--ERKKPGRACRICEAEDHIAKDCPNREKQTCRNCGAEDHMAR 330
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDA 296
+CPD+ K + C KCG+ H C N+ + C IC H
Sbjct: 331 ECPDREK------RTCRKCGEEDHIARECPNA------PKQTCNICDAEDHFAKDCPKKG 378
Query: 297 VPG--------EVSCFRCGQLGH 311
PG +V C C Q GH
Sbjct: 379 EPGLRPRRDWSQVVCSLCEQKGH 401
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 17/108 (15%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKD 237
C NCG+EGH A C ++ CF CG H +C+ + +C C + GH D
Sbjct: 33 ACRNCGQEGHFAREC-PEPRKMGACFNCGEEGHSKAECTAPRKFKGECRNCGEEGHMISD 91
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD-----DLKEVQCY 280
CP + C C GH+ C+N +D D+ E + +
Sbjct: 92 CP-------TYVEKCKNCQQEGHNAIDCKNPMMMDRHGVADMSEAEAW 132
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-SKAQDCFICKKGGH 233
P R C+NCGEEGH C + K K C CG H + C + + C C++ GH
Sbjct: 48 PEPRKMGACFNCGEEGHSKAECTAPRKFKGECRNCGEEGHMISDCPTYVEKCKNCQQEGH 107
Query: 234 RAKDC 238
A DC
Sbjct: 108 NAIDC 112
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD----------- 224
PDR +TC CGEE H+A C +A K+ C +C + +H + C K +
Sbjct: 333 PDREKRTCRKCGEEDHIARECPNAPKQT--CNICDAEDHFAKDCPKKGEPGLRPRRDWSQ 390
Query: 225 --CFICKKGGHRAKDCPDKHKSGFQNAQV 251
C +C++ GH CP + N +
Sbjct: 391 VVCSLCEQKGHGRARCPQAEGTAAANGET 419
>gi|392863891|gb|EAS35332.2| zinc knuckle transcription factor [Coccidioides immitis RS]
Length = 482
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 12/135 (8%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHRAKD 237
C C E GH A +C K C CG+ +H +QC + + +C C++ GH AKD
Sbjct: 294 CVICKEIGHRARDCIQPRIDKSGCRNCGNPDHHAKQCPEPRSAEGVECKKCQQVGHFAKD 353
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
CP+K N++ C CG+ GH C ++D+ V C C GH+ +
Sbjct: 354 CPEKG----VNSRACRNCGEEGHMSKECDKPRNMDN---VTCRNCEKTGHMSRDCPEEKD 406
Query: 298 PGEVSCFRCGQLGHT 312
+V C C ++GHT
Sbjct: 407 WSKVQCTNCKEMGHT 421
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKD 237
C+NCG+ GH + C K CF CG H +C + C IC+ GH A +
Sbjct: 51 ACHNCGQPGHFSRECPEPRKASGACFNCGEEGHNKAECPNPRVFKGTCRICQAEGHPAFE 110
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
CPDK VC C GH C + D
Sbjct: 111 CPDK------APDVCKNCKGEGHKTKDCTENRKFD 139
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-KAQD-CFICKKGGH 233
P + C+NCGEEGH C + K C +C + H +C KA D C CK GH
Sbjct: 68 PRKASGACFNCGEEGHNKAECPNPRVFKGTCRICQAEGHPAFECPDKAPDVCKNCKGEGH 127
Query: 234 RAKDCPDKHK 243
+ KDC + K
Sbjct: 128 KTKDCTENRK 137
>gi|395146534|gb|AFN53688.1| putative actin-depolymerizing factor 12 [Linum usitatissimum]
Length = 388
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 12/117 (10%)
Query: 206 CFVCGSLEHGVRQCSKAQD------CFICKKGGHRAKDCPDKHKSGFQN--AQVCLKCGD 257
C++C +++H + C + + C +C++ GH K CP+K + G ++ A++C CG+
Sbjct: 75 CYICKAVDHIAKLCPQKAEWERDKICLLCRQRGHSLKRCPNK-RDGDESVGAKLCYNCGE 133
Query: 258 SGHDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+GH + +C K C++C GHL C N + P SC CG + H
Sbjct: 134 TGHSLANCSQPIQDGGTKYASCFVCNEQGHLSKDCPKNANGIYPKGGSCKICGGVTH 190
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVK----RKKPCFVCGSLEHGVRQCSKAQD--------CF 226
G + CYNCGE GH NC ++ + CFVC H + C K + C
Sbjct: 124 GAKLCYNCGETGHSLANCSQPIQDGGTKYASCFVCNEQGHLSKDCPKNANGIYPKGGSCK 183
Query: 227 ICKKGGHRAKDCPDKHK 243
IC H A+DCPDK K
Sbjct: 184 ICGGVTHLARDCPDKAK 200
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 11/118 (9%)
Query: 182 TCYNCGEEGHMAVNC--RSAVKRKKPCFVCGSLEHGVRQCSKAQD---------CFICKK 230
+CY C H+A C ++ +R K C +C H +++C +D C+ C +
Sbjct: 74 SCYICKAVDHIAKLCPQKAEWERDKICLLCRQRGHSLKRCPNKRDGDESVGAKLCYNCGE 133
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
GH +C + G C C + GH C + + K C IC HL
Sbjct: 134 TGHSLANCSQPIQDGGTKYASCFVCNEQGHLSKDCPKNANGIYPKGGSCKICGGVTHL 191
>gi|213623438|gb|AAI69746.1| CNBP protein [Xenopus laevis]
Length = 178
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 66/136 (48%), Gaps = 30/136 (22%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 55 CYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPRKEREQCCYNCGKPGHLARD 111
Query: 238 C--PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISD 295
C D+HK C CG+ GH D +V+CY C GH V I+
Sbjct: 112 CDHADEHK--------CYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINC 151
Query: 296 AVPGEVSCFRCGQLGH 311
+ EV+C+RCG+ GH
Sbjct: 152 SKTSEVNCYRCGESGH 167
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 52/110 (47%), Gaps = 16/110 (14%)
Query: 206 CFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFS 264
C+ CG H + C +D C+ C +GGH AKDC + K + Q C CG GH
Sbjct: 55 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPRK---EREQCCYNCGKPGHLARD 111
Query: 265 CRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C D E +CY C FGH+ D +V C+RCG+ GH +
Sbjct: 112 C------DHADEHKCYSCGEFGHI----QKDCT--KVKCYRCGETGHVAI 149
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 11/81 (13%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
Q CYNCG+ GH+A +C A + K C+ CG H + C+K + C+ C + GH A +C
Sbjct: 97 QCCYNCGKPGHLARDCDHADEHK--CYSCGEFGHIQKDCTKVK-CYRCGETGHVAINCS- 152
Query: 241 KHKSGFQNAQV-CLKCGDSGH 260
+ ++V C +CG+SGH
Sbjct: 153 ------KTSEVNCYRCGESGH 167
>gi|195638752|gb|ACG38844.1| actin depolymerizing factor [Zea mays]
Length = 276
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 11/115 (9%)
Query: 206 CFVCGSLEHGVRQCS------KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
CF+C S +H + C K + C +C++ GH K+CPDK + C CG+SG
Sbjct: 71 CFICKSTDHVAKACPEKALWDKKKICLLCRERGHSLKNCPDKXXGNLM--KFCYNCGESG 128
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
H + C C+IC GHL C N P C CG++ H
Sbjct: 129 HSLSKCPKPIENGGTNFASCFICNQQGHLSKNCPENKHGIYPKGGCCKVCGEVTH 183
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 181 QTCYNCGEEGHMAVNC--RSAVKRKKPCFVCGSLEHGVRQCSKA--------QDCFICKK 230
+ C C E GH NC + K C+ CG H + +C K CFIC +
Sbjct: 94 KICLLCRERGHSLKNCPDKXXGNLMKFCYNCGESGHSLSKCPKPIENGGTNFASCFICNQ 153
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
GH +K+CP+ + C CG+ H C N
Sbjct: 154 QGHLSKNCPENKHGIYPKGGCCKVCGEVTHLARHCPN 190
>gi|171694395|ref|XP_001912122.1| hypothetical protein [Podospora anserina S mat+]
gi|170947146|emb|CAP73951.1| unnamed protein product [Podospora anserina S mat+]
Length = 479
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 57/137 (41%), Gaps = 18/137 (13%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHRAKD 237
CYNC E GH +C + K C CG H V +C + + +C C + GH +KD
Sbjct: 304 CYNCDEVGHRVRDCPTPRVDKFACKNCGQPGHPVAECPEPRSAEGVECRKCNETGHFSKD 363
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISD 295
CP G C CG GH C ++D+ VQC C GH C D
Sbjct: 364 CPSAGPRG------CRNCGQEGHMSKECTEPKNMDN---VQCRNCDEMGHFSKECPKPPD 414
Query: 296 AVPGEVSCFRCGQLGHT 312
V C C Q GHT
Sbjct: 415 WS--RVECQNCHQKGHT 429
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 187 GEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDCPDKHKS 244
GE GH +C + K C CG H + C A C C H K+CPD
Sbjct: 68 GETGHNKADCSNPRKPLGACRRCGDEGHYSKDCPTAGPMTCNACGSTEHLRKECPDA--- 124
Query: 245 GFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
+C CG+ GH + +C N+ +D
Sbjct: 125 ---GPMLCKNCGEEGHTISACENARKVD 149
>gi|395754126|ref|XP_003779713.1| PREDICTED: zinc finger CCHC domain-containing protein 13-like
[Pongo abelii]
Length = 170
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 60/124 (48%), Gaps = 25/124 (20%)
Query: 183 CYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQC--SKAQDCFICKKGGHRAKDCP 239
CYNCG GH+A +C+ + R + C+ CG L H R C K Q C+ C K GH KDC
Sbjct: 67 CYNCGRSGHIAKDCKEPKRERHQHCYTCGRLGHLARDCDRQKEQKCYSCGKLGHIQKDC- 125
Query: 240 DKHKSGFQNAQV-CLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVP 298
AQV C +CG+ GH +C + +V CY C GHL + P
Sbjct: 126 ---------AQVKCYRCGEIGHVAINCSKA------SQVNCYRCGKSGHL-----ARECP 165
Query: 299 GEVS 302
EV+
Sbjct: 166 SEVT 169
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 206 CFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFS 264
C+ CG + C + C+ C + GH AKDC + + + Q C CG GH
Sbjct: 47 CYCCGESSRHAKNCVLLGNICYNCGRSGHIAKDCKEPKR---ERHQHCYTCGRLGHLARD 103
Query: 265 CRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C D KE +CY C GH+ +V C+RCG++GH +
Sbjct: 104 C------DRQKEQKCYSCGKLGHI------QKDCAQVKCYRCGEIGHVAI 141
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 7/63 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ--DCFICKKGGHRAKDC 238
Q CY+CG+ GH+ +C + VK C+ CG + H CSKA +C+ C K GH A++C
Sbjct: 110 QKCYSCGKLGHIQKDC-AQVK----CYRCGEIGHVAINCSKASQVNCYRCGKSGHLAREC 164
Query: 239 PDK 241
P +
Sbjct: 165 PSE 167
Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CY CG GH+A +C ++++ C+ CG L H + C++ + C+ C + GH
Sbjct: 82 EPKRERHQHCYTCGRLGHLARDCDR--QKEQKCYSCGKLGHIQKDCAQVK-CYRCGEIGH 138
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + +QV C +CG SGH
Sbjct: 139 VAINCS-------KASQVNCYRCGKSGH 159
>gi|444321188|ref|XP_004181250.1| hypothetical protein TBLA_0F01890 [Tetrapisispora blattae CBS 6284]
gi|387514294|emb|CCH61731.1| hypothetical protein TBLA_0F01890 [Tetrapisispora blattae CBS 6284]
Length = 451
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 78/201 (38%), Gaps = 41/201 (20%)
Query: 127 EIEDQSVIVRKEEQKVETADNGDEGVTTVEISDNIVLRKLLRGP-RYF----DPPDRGWQ 181
+I+D+S I T DN +T E+ DN + LRG RYF D ++
Sbjct: 44 KIDDKSAIF--------TDDNKSVALTIEEVDDNKEELRALRGQGRYFGLEDDNLNKLEP 95
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLE-HGVRQCSKAQDCFICKKGGHRAKDCPD 240
C NC + GH+ NC + C CG L+ H + C KA C C + GH CP
Sbjct: 96 KCNNCSQRGHLKKNCPHVI-----CTYCGVLDDHYSQHCPKAIICSNCNESGHYKSKCPQ 150
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGE 300
K K F C C H C N + LKE N +D +
Sbjct: 151 KWKRKF-----CTMCNSKIHSRDRCPNVWRSYLLKESP---------ENSNNKNDTNTKK 196
Query: 301 --------VSCFRCGQLGHTG 313
+SC+ CG GH G
Sbjct: 197 QSKLSIDFISCYNCGFSGHFG 217
>gi|432090075|gb|ELK23671.1| Cellular nucleic acid-binding protein [Myotis davidii]
Length = 142
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 72/156 (46%), Gaps = 32/156 (20%)
Query: 163 LRKLLRGPRYFDP--PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC- 219
+R RG ++ PD CY CGE GH+A +C ++ C+ CG H + C
Sbjct: 1 MRSRGRGFQFVSSSLPD----ICYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCK 53
Query: 220 ----SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLK 275
+ Q C+ C K GH A+DC + Q C CG+ GH D
Sbjct: 54 EPKREREQCCYNCGKPGHLARDCD------HADEQKCYSCGEFGHIQ---------KDCT 98
Query: 276 EVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
+V+CY C GH V I+ + EV+C+RCG+ GH
Sbjct: 99 KVKCYRCGETGH---VAINCSKTSEVNCYRCGESGH 131
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 38 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 97
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 98 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 132
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 16/110 (14%)
Query: 206 CFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFS 264
C+ CG H + C +D C+ C +GGH AKDC + + + Q C CG GH
Sbjct: 19 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARD 75
Query: 265 CRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C D E +CY C FGH+ D +V C+RCG+ GH +
Sbjct: 76 C------DHADEQKCYSCGEFGHI----QKDCT--KVKCYRCGETGHVAI 113
>gi|409050450|gb|EKM59927.1| hypothetical protein PHACADRAFT_250735 [Phanerochaete carnosa
HHB-10118-sp]
Length = 697
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 51/113 (45%), Gaps = 17/113 (15%)
Query: 171 RYFDPPDRGWQ------TCYNCGEEG-HMAVNCRSAVKRKKPCFVCGSL-EHGVRQCSKA 222
RYFD P G + C CG EG H NC + C CG EHG R C +
Sbjct: 298 RYFDDPADGTEPKTAKIVCKKCGAEGDHKTWNCPVII-----CLTCGVRNEHGTRSCPIS 352
Query: 223 QDCFICKKGGHRAKDCPDKH----KSGFQNAQVCLKCGDSGHDMFSCRNSYSL 271
+ CF C GH +DCP+++ + G N C +CG S H + C + +
Sbjct: 353 KVCFTCGMKGHINRDCPNRYAGRARMGGSNFDDCDRCGSSLHQINECPTLWRI 405
>gi|154345724|ref|XP_001568799.1| putative poly-zinc finger protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066141|emb|CAM43931.1| putative poly-zinc finger protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 135
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 59/136 (43%), Gaps = 18/136 (13%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CG GH + C SA PCF CG H ++C ++ CF C K GHRA++
Sbjct: 3 CYRCGGVGHQSRECTSAAD-SAPCFRCGQPGHVAKECLSTISAEEAPCFFCHKAGHRARE 61
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL--CCVNISD 295
CP+ +C C GH C N+ CY+C GH+ C
Sbjct: 62 CPEAPPK--SETVMCYNCSQKGHIASECTNN--------PHCYLCNEDGHVGRSCPAAPK 111
Query: 296 AVPGEVSCFRCGQLGH 311
+ +C +CG+ GH
Sbjct: 112 RSAADKTCRKCGKKGH 127
Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA-------QDCFI 227
PP CYNC ++GH+A C + C++C H R C A + C
Sbjct: 66 PPKSETVMCYNCSQKGHIASECTNNPH----CYLCNEDGHVGRSCPAAPKRSAADKTCRK 121
Query: 228 CKKGGHRAKDCPD 240
C K GH KDCP+
Sbjct: 122 CGKKGHLRKDCPE 134
>gi|443735051|gb|ELU18906.1| hypothetical protein CAPTEDRAFT_180220 [Capitella teleta]
Length = 651
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCSKAQD-------CFICKKGGHR 234
CY CGE+GH A C SA C CG H R+C KA C C + GH
Sbjct: 50 CYKCGEDGHFARECPSAGGGGGGGCHKCGEEGHFARECPKAGGGGGGGRGCHKCGEEGHF 109
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
A++CP SG C KCG+ GH C NS
Sbjct: 110 ARECPSAGSSGGGGGSGCRKCGEEGHFARECPNS 143
>gi|353236645|emb|CCA68635.1| hypothetical protein PIIN_02500 [Piriformospora indica DSM 11827]
Length = 257
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 15/100 (15%)
Query: 181 QTCYNCGEEGHMAVNC--RSAVKRKKP----CFVCGSLEHGVRQCSKAQD---------C 225
+TC+ C ++GH A +C S + K+P C+ CG+ +H + +C K D C
Sbjct: 93 KTCFACRQKGHAAKDCPSNSELGEKRPVTGICYRCGATKHTLAKCRKPIDEANPLPFASC 152
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
FICK GH A CP K + N C CG + H +C
Sbjct: 153 FICKGKGHLASSCPQNEKGIYPNGGSCKLCGQTDHLARAC 192
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 223 QDCFICKKGGHRAKDCPDKHKSGFQN--AQVCLKCGDSGHDMFSCRNSY-SLDDLKEVQC 279
+ CF C++ GH AKDCP + G + +C +CG + H + CR + L C
Sbjct: 93 KTCFACRQKGHAAKDCPSNSELGEKRPVTGICYRCGATKHTLAKCRKPIDEANPLPFASC 152
Query: 280 YICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+IC+ GHL C N P SC CGQ H
Sbjct: 153 FICKGKGHLASSCPQNEKGIYPNGGSCKLCGQTDH 187
>gi|109131255|ref|XP_001096279.1| PREDICTED: zinc finger CCHC domain-containing protein 13-like
[Macaca mulatta]
gi|355757474|gb|EHH60999.1| Zinc finger CCHC domain-containing protein 13 [Macaca fascicularis]
Length = 170
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 61/135 (45%), Gaps = 26/135 (19%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA-----QDCFICKKGGHRAK 236
TCY CGE GH A NC V C+ CG H + C + Q C+ C + GH A
Sbjct: 46 TCYRCGEFGHHAKNC---VLLGNICYNCGRSGHIAKDCKEPKRERDQHCYTCGRLGHLAC 102
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDA 296
DC Q Q C CG GH D +V+CY C GH V I+ +
Sbjct: 103 DCDH------QKEQKCYSCGKLGHIQ---------KDCAQVKCYRCGETGH---VAINCS 144
Query: 297 VPGEVSCFRCGQLGH 311
+V+C+RCG+ GH
Sbjct: 145 KASQVNCYRCGESGH 159
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 11/81 (13%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
Q CY CG GH+A +C ++++ C+ CG L H + C++ + C+ C + GH A +C
Sbjct: 89 QHCYTCGRLGHLACDCDH--QKEQKCYSCGKLGHIQKDCAQVK-CYRCGETGHVAINCS- 144
Query: 241 KHKSGFQNAQV-CLKCGDSGH 260
+ +QV C +CG+SGH
Sbjct: 145 ------KASQVNCYRCGESGH 159
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 7/63 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ--DCFICKKGGHRAKDC 238
Q CY+CG+ GH+ +C + VK C+ CG H CSKA +C+ C + GH A++C
Sbjct: 110 QKCYSCGKLGHIQKDC-AQVK----CYRCGETGHVAINCSKASQVNCYRCGESGHLAREC 164
Query: 239 PDK 241
P +
Sbjct: 165 PSE 167
>gi|395146475|gb|AFN53632.1| actin-depolymerizing factor 12 [Linum usitatissimum]
Length = 359
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 12/119 (10%)
Query: 206 CFVCGSLEHGVRQCSKAQD------CFICKKGGHRAKDCPDKHKSGFQN--AQVCLKCGD 257
C++C +++H + C + + C +C++ GH K CP+K + G ++ A++C CG+
Sbjct: 78 CYICKAVDHIAKLCPQKAEWERDKICLLCRQRGHSLKRCPNK-RDGDESIGAKLCYNCGE 136
Query: 258 SGHDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGHTG 313
+GH + +C K C++C GHL C N + P SC CG + H
Sbjct: 137 TGHSLANCSQPIQDGGTKYASCFVCNEQGHLSKDCPKNANGIYPKGGSCKICGGVTHLA 195
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVK----RKKPCFVCGSLEHGVRQCSKAQD--------CF 226
G + CYNCGE GH NC ++ + CFVC H + C K + C
Sbjct: 127 GAKLCYNCGETGHSLANCSQPIQDGGTKYASCFVCNEQGHLSKDCPKNANGIYPKGGSCK 186
Query: 227 ICKKGGHRAKDCPDKHK 243
IC H A+DCPDK K
Sbjct: 187 ICGGVTHLARDCPDKAK 203
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 11/118 (9%)
Query: 182 TCYNCGEEGHMAVNC--RSAVKRKKPCFVCGSLEHGVRQCSKAQD---------CFICKK 230
+CY C H+A C ++ +R K C +C H +++C +D C+ C +
Sbjct: 77 SCYICKAVDHIAKLCPQKAEWERDKICLLCRQRGHSLKRCPNKRDGDESIGAKLCYNCGE 136
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
GH +C + G C C + GH C + + K C IC HL
Sbjct: 137 TGHSLANCSQPIQDGGTKYASCFVCNEQGHLSKDCPKNANGIYPKGGSCKICGGVTHL 194
>gi|363747942|ref|XP_003644189.1| hypothetical protein Ecym_1118 [Eremothecium cymbalariae
DBVPG#7215]
gi|356887821|gb|AET37372.1| hypothetical protein Ecym_1118 [Eremothecium cymbalariae
DBVPG#7215]
Length = 162
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 65/142 (45%), Gaps = 25/142 (17%)
Query: 183 CYNCGEEGHMAVNC---RSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCP 239
CYNC + GH+ C RSA K C+ CG H +C+ Q CF C + GH +KDCP
Sbjct: 25 CYNCNQPGHIQSECTLPRSA--EHKQCYNCGETGHVRGECN-IQKCFNCNQAGHISKDCP 81
Query: 240 DKHKSGFQNAQV----------CLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC 289
+ +S F ++ C +CG H C L D E +CY C GH+
Sbjct: 82 EPRRSRFSTSRASFSTKSSKVSCYRCGGPNHMAKDC-----LQD--ETKCYSCGKSGHI- 133
Query: 290 CVNISDAVPGEVSCFRCGQLGH 311
+ P E +C+ C + GH
Sbjct: 134 -SRDCPSGPSEKTCYNCNEPGH 154
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 50/135 (37%), Gaps = 31/135 (22%)
Query: 203 KKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCP---------------DKHKSGFQ 247
+K C+VCG L H C + C+ C + GH +C H G
Sbjct: 3 QKACYVCGKLGHLADNCDSERLCYNCNQPGHIQSECTLPRSAEHKQCYNCGETGHVRGEC 62
Query: 248 NAQVCLKCGDSGHDMFSC-----------RNSYSLDDLKEVQCYICRCFGHLCCVNISDA 296
N Q C C +GH C R S+S K V CY C H+ D
Sbjct: 63 NIQKCFNCNQAGHISKDCPEPRRSRFSTSRASFSTKSSK-VSCYRCGGPNHM----AKDC 117
Query: 297 VPGEVSCFRCGQLGH 311
+ E C+ CG+ GH
Sbjct: 118 LQDETKCYSCGKSGH 132
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA---QDCFICKKGGHRAKDC 238
+CY CG HMA +C ++ + C+ CG H R C + C+ C + GH ++DC
Sbjct: 103 SCYRCGGPNHMAKDC---LQDETKCYSCGKSGHISRDCPSGPSEKTCYNCNEPGHISRDC 159
Query: 239 P 239
P
Sbjct: 160 P 160
>gi|148666814|gb|EDK99230.1| cellular nucleic acid binding protein, isoform CRA_c [Mus musculus]
Length = 149
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 55/114 (48%), Gaps = 18/114 (15%)
Query: 178 RGWQTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHR 234
R TCYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH
Sbjct: 41 RRMVTCYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHI 100
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
KDC C +CG++GH +C + EV CY C GHL
Sbjct: 101 QKDCTKVK---------CYRCGETGHVAINCSKT------SEVNCYRCGESGHL 139
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 61 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 117
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
A +C + C +CG+SGH C
Sbjct: 118 VAINCSKTSEVN------CYRCGESGHLAREC 143
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 18/105 (17%)
Query: 219 CSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC-----RNSYSLDD 273
C + C+ C +GGH AKDC + + + Q C CG GH C + YS +
Sbjct: 40 CRRMVTCYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDCDHADEQKCYSCGE 96
Query: 274 LKEVQ-------CYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
+Q CY C GH V I+ + EV+C+RCG+ GH
Sbjct: 97 FGHIQKDCTKVKCYRCGETGH---VAINCSKTSEVNCYRCGESGH 138
>gi|71416083|ref|XP_810085.1| universal minicircle sequence binding protein (UMSBP) [Trypanosoma
cruzi strain CL Brener]
gi|51340810|gb|AAU01009.1| nucleic acid binding protein [Trypanosoma cruzi]
gi|70874566|gb|EAN88234.1| universal minicircle sequence binding protein (UMSBP) [Trypanosoma
cruzi]
Length = 134
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 37/146 (25%)
Query: 178 RGWQTCYNCGEEGHMAVNCRS---AVKRKKPCFVCGSLEHGVRQCSKA-------QDCFI 227
RG + CYNCG+ GH++ C + + C+ CG + H R+C + C+
Sbjct: 8 RGSRACYNCGQPGHLSRECPTRPPGAMGDRACYNCGRMGHLSRECPTRPPGAMGDRACYN 67
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGH 287
C + GH +++CP++ GF+ + CY C+ GH
Sbjct: 68 CGRMGHLSRECPNRPAGGFRG-------------------------VARGACYHCQQEGH 102
Query: 288 LCCVNISDAVP-GEVSCFRCGQLGHT 312
L + +A P GE +C+ CGQ GHT
Sbjct: 103 L-ARDCPNAPPGGERACYNCGQTGHT 127
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 16/100 (16%)
Query: 179 GWQTCYNCGEEGHMAVNCRS---AVKRKKPCFVCGSLEHGVRQCSKAQ----------DC 225
G + CYNCG GH++ C + + C+ CG + H R+C C
Sbjct: 35 GDRACYNCGRMGHLSRECPTRPPGAMGDRACYNCGRMGHLSRECPNRPAGGFRGVARGAC 94
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ C++ GH A+DCP+ G + C CG +GH +C
Sbjct: 95 YHCQQEGHLARDCPNAPPGG---ERACYNCGQTGHTSRAC 131
>gi|241022874|ref|XP_002406044.1| cellular nucleic acid binding protein, putative [Ixodes scapularis]
gi|215491870|gb|EEC01511.1| cellular nucleic acid binding protein, putative [Ixodes scapularis]
Length = 239
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAV----KRKKPCFVCGSLEHGVRQCS-----KAQDCFICKKGG 232
C+ CGEEGHM+ +C SA + K+ CF CG H R C +++ CF C + G
Sbjct: 19 ACFKCGEEGHMSRDCPSAGGDGDRPKRGCFNCGEDGHMSRDCPNPKQERSKGCFKCGEEG 78
Query: 233 HRAKDCPDKHKSGFQN-AQVCLKCGDSGHDMFSCRN 267
H ++DCP + G + + C KC GH C N
Sbjct: 79 HMSRDCPTAGEGGDSDRPKGCFKCQQEGHMAKDCTN 114
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 10/72 (13%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA---------QDCF 226
DR + C+NCGE+GHM+ +C + + R K CF CG H R C A + CF
Sbjct: 41 DRPKRGCFNCGEDGHMSRDCPNPKQERSKGCFKCGEEGHMSRDCPTAGEGGDSDRPKGCF 100
Query: 227 ICKKGGHRAKDC 238
C++ GH AKDC
Sbjct: 101 KCQQEGHMAKDC 112
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRC 284
CF C + GH ++DCP G + + C CG+ GH C N + C+ C
Sbjct: 20 CFKCGEEGHMSRDCPSAGGDGDRPKRGCFNCGEDGHMSRDCPNP---KQERSKGCFKCGE 76
Query: 285 FGHLC--CVNISDAVPGEVS--CFRCGQLGH 311
GH+ C + + CF+C Q GH
Sbjct: 77 EGHMSRDCPTAGEGGDSDRPKGCFKCQQEGH 107
>gi|345329903|ref|XP_003431441.1| PREDICTED: cellular nucleic acid-binding protein-like
[Ornithorhynchus anatinus]
Length = 167
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 65/138 (47%), Gaps = 26/138 (18%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGH 233
G CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH
Sbjct: 40 GRDICYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGH 96
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNI 293
A+DC + Q C CG+ GH D +V+CY C GH V I
Sbjct: 97 LARDCD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAI 138
Query: 294 SDAVPGEVSCFRCGQLGH 311
+ + EV+C+RCG+ GH
Sbjct: 139 NCSKTSEVNCYRCGESGH 156
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 63/148 (42%), Gaps = 31/148 (20%)
Query: 183 CYNCGEEGHMAVNCRSAVKR---------------KKPCFVCGSLEHGVRQCSKAQD-CF 226
C+ CG GH A C + R + C+ CG H + C +D C+
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGLRSRGRGGFSSGRDICYRCGESGHLAKDCDLQEDACY 65
Query: 227 ICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFG 286
C +GGH AKDC + + + Q C CG GH C D E +CY C FG
Sbjct: 66 NCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCGEFG 116
Query: 287 HLCCVNISDAVPGEVSCFRCGQLGHTGL 314
H+ D +V C+RCG+ GH +
Sbjct: 117 HI----QKDCT--KVKCYRCGETGHVAI 138
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 63 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 122
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 123 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 157
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 79 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 135
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 136 VAINCS-------KTSEVNCYRCGESGH 156
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 43/122 (35%)
Query: 224 DCFICKKGGHRAKDCPD----------KHKSGFQNAQ-VCLKCGDSGHDMFSCRNSYSLD 272
+CF C + GH A++CP + + GF + + +C +CG+SGH C
Sbjct: 5 ECFKCGRSGHWARECPTGGGRGRGLRSRGRGGFSSGRDICYRCGESGHLAKDC------- 57
Query: 273 DLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----------CFRCGQL 309
DL+E CY C GH+ CC N PG ++ C+ CG+
Sbjct: 58 DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDHADEQKCYSCGEF 115
Query: 310 GH 311
GH
Sbjct: 116 GH 117
>gi|4929293|gb|AAD33937.1|AF144698_1 cellular nucleic acid binding protein [Rhinella arenarum]
Length = 178
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 55 CYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPRKEREQCCYNCGKPGHLARD 111
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 112 CE------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGDTGH---VAINCSK 153
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 154 TSEVNCYRCGESGH 167
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ K R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 74 ACYNCGRGGHIAKDCKEPRKEREQCCYNCGKPGHLARDCEHADEQKCYSCGEFGHIQKDC 133
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CGD+GH +C + EV CY C GHL
Sbjct: 134 ---------TKVKCYRCGDTGHVAINCSKT------SEVNCYRCGESGHL 168
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 16/110 (14%)
Query: 206 CFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFS 264
C+ CG H + C +D C+ C +GGH AKDC + K + Q C CG GH
Sbjct: 55 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPRK---EREQCCYNCGKPGHLARD 111
Query: 265 CRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C ++ E +CY C FGH+ D +V C+RCG GH +
Sbjct: 112 CEHA------DEQKCYSCGEFGHI----QKDCT--KVKCYRCGDTGHVAI 149
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C GH
Sbjct: 90 EPRKEREQCCYNCGKPGHLARDCEHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGDTGH 146
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 147 VAINCS-------KTSEVNCYRCGESGH 167
>gi|284925124|ref|NP_001165425.1| cellular nucleic acid binding protein b [Xenopus laevis]
gi|1531585|emb|CAA69031.1| cellular nucleic acid binding protein [Xenopus laevis]
Length = 178
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 55 CYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPRKEREQCCYNCGKPGHLARD 111
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 112 CE------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGDTGH---VAINCSK 153
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 154 TSEVNCYRCGESGH 167
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ K R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 74 ACYNCGRGGHIAKDCKEPRKEREQCCYNCGKPGHLARDCEHADEQKCYSCGEFGHIQKDC 133
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CGD+GH +C + EV CY C GHL
Sbjct: 134 ---------TKVKCYRCGDTGHVAINCSKT------SEVNCYRCGESGHL 168
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 16/110 (14%)
Query: 206 CFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFS 264
C+ CG H + C +D C+ C +GGH AKDC + K + Q C CG GH
Sbjct: 55 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPRK---EREQCCYNCGKPGHLARD 111
Query: 265 CRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C ++ E +CY C FGH+ D +V C+RCG GH +
Sbjct: 112 CEHA------DEQKCYSCGEFGHI----QKDCT--KVKCYRCGDTGHVAI 149
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C GH
Sbjct: 90 EPRKEREQCCYNCGKPGHLARDCEHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGDTGH 146
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 147 VAINCS-------KTSEVNCYRCGESGH 167
>gi|308472350|ref|XP_003098403.1| hypothetical protein CRE_06839 [Caenorhabditis remanei]
gi|308269067|gb|EFP13020.1| hypothetical protein CRE_06839 [Caenorhabditis remanei]
Length = 386
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRC 284
CF C++ GHR DCP ++ S Q+ VC KCG H + C+ + C++C+
Sbjct: 229 CFHCREPGHRLADCPKRNSS--QSDGVCFKCGSMEHSIHECKKK-GVKGFPYATCFVCKQ 285
Query: 285 FGHL---CCVNISDAVPGEVSCFRCGQLGH 311
GH+ C N + P +C CG +GH
Sbjct: 286 VGHISRDCHQNANGVYPDGGACNVCGAVGH 315
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 182 TCYNCGEEGHMAVNC--RSAVKRKKPCFVCGSLEHGVRQCSKA-------QDCFICKKGG 232
C++C E GH +C R++ + CF CGS+EH + +C K CF+CK+ G
Sbjct: 228 ACFHCREPGHRLADCPKRNSSQSDGVCFKCGSMEHSIHECKKKGVKGFPYATCFVCKQVG 287
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
H ++DC + + C CG GH
Sbjct: 288 HISRDCHQNANGVYPDGGACNVCGAVGH 315
>gi|407920706|gb|EKG13888.1| Zinc finger CCHC-type protein [Macrophomina phaseolina MS6]
Length = 347
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 58/137 (42%), Gaps = 28/137 (20%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
+CYNCG GH+ VNC A + Q+C+ C + GHR +CP+
Sbjct: 110 SCYNCGGHGHIKVNCPEAPRG-----------------GGGQECYGCGQVGHRKSECPN- 151
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV--QCYICRCFGHL---CCVNISDA 296
G + C CG GH C N D+ CY C GHL C I+ A
Sbjct: 152 ---GGGGGRACYNCGQYGHRKADCPNPSQGDNSGGGGRPCYNCGEIGHLKSECTNPINPA 208
Query: 297 VPG--EVSCFRCGQLGH 311
G + CF+C ++GH
Sbjct: 209 TGGGDDRLCFKCHKVGH 225
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 52/153 (33%), Gaps = 53/153 (34%)
Query: 175 PPDRGWQTCYNCGEEGH-------------MAVNCRSAVKRK----------------KP 205
P G Q CY CG+ GH NC RK +P
Sbjct: 128 PRGGGGQECYGCGQVGHRKSECPNGGGGGRACYNCGQYGHRKADCPNPSQGDNSGGGGRP 187
Query: 206 CFVCGSLEHGVRQCSKAQD----------CFICKKGGHRAKDCPDKHKSGFQNAQVCLKC 255
C+ CG + H +C+ + CF C K GH A+DC C C
Sbjct: 188 CYNCGEIGHLKSECTNPINPATGGGDDRLCFKCHKVGHMARDC-----------NFCPNC 236
Query: 256 GDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
GH F C + D ++ C +C+ GH
Sbjct: 237 EQEGHGFFEC---HLKKDYSKITCTVCKEKGHT 266
>gi|297796051|ref|XP_002865910.1| zinc knuckle (CCHC-type) family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297311745|gb|EFH42169.1| zinc knuckle (CCHC-type) family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 268
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 14/117 (11%)
Query: 206 CFVCGSLEHGVRQCSKAQD------CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
CF+C S H + C + + C C++ GH K+CP+K+ + ++C CGD+G
Sbjct: 76 CFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNDESSEK-KLCYNCGDTG 134
Query: 260 HDMFSCRNSYSLDD--LKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
H + C Y L+D K C+IC+ GH+ C N P C CG + H
Sbjct: 135 HSLSHC--PYPLEDGGTKFASCFICKGQGHISKNCPQNKHGIYPMGGCCKVCGSVAH 189
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 11/101 (10%)
Query: 181 QTCYNCGEEGHMAVNCRSA---VKRKKPCFVCGSLEHGVRQC--------SKAQDCFICK 229
+ C C GH NC KK C+ CG H + C +K CFICK
Sbjct: 99 KICLQCRRRGHSLKNCPEKNDESSEKKLCYNCGDTGHSLSHCPYPLEDGGTKFASCFICK 158
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYS 270
GH +K+CP + C CG H + C + ++
Sbjct: 159 GQGHISKNCPQNKHGIYPMGGCCKVCGSVAHLVKDCPDKFN 199
>gi|262072939|dbj|BAI47777.1| CCHC-type zinc finger, nucleic acid binding protein [Sus scrofa]
Length = 137
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 68/147 (46%), Gaps = 34/147 (23%)
Query: 178 RGWQ--------TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQD 224
RG+Q CY CGE GH+A +C ++ C+ CG H + C + Q
Sbjct: 1 RGFQFVSSSLPDICYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPKREREQC 57
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRC 284
C+ C K GH A+DC + Q C CG+ GH D +V+CY C
Sbjct: 58 CYNCGKPGHLARDCD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGE 102
Query: 285 FGHLCCVNISDAVPGEVSCFRCGQLGH 311
GH V I+ + EV+C+RCG+ GH
Sbjct: 103 TGH---VAINCSKTSEVNCYRCGESGH 126
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 33 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 92
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 93 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 127
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 16/110 (14%)
Query: 206 CFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFS 264
C+ CG H + C +D C+ C +GGH AKDC + + + Q C CG GH
Sbjct: 14 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARD 70
Query: 265 CRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C D E +CY C FGH+ D +V C+RCG+ GH +
Sbjct: 71 C------DHADEQKCYSCGEFGHI----QKDCT--KVKCYRCGETGHVAI 108
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 49 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 105
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 106 VAINCS-------KTSEVNCYRCGESGH 126
>gi|149728229|ref|XP_001488727.1| PREDICTED: cellular nucleic acid-binding protein-like isoform 3
[Equus caballus]
gi|291393358|ref|XP_002713211.1| PREDICTED: zinc finger protein 9 isoform 3 [Oryctolagus cuniculus]
gi|296225968|ref|XP_002758717.1| PREDICTED: cellular nucleic acid-binding protein isoform 2
[Callithrix jacchus]
gi|332261809|ref|XP_003279959.1| PREDICTED: cellular nucleic acid-binding protein isoform 3
[Nomascus leucogenys]
gi|397518584|ref|XP_003829464.1| PREDICTED: cellular nucleic acid-binding protein isoform 3 [Pan
paniscus]
gi|402887091|ref|XP_003906938.1| PREDICTED: cellular nucleic acid-binding protein [Papio anubis]
gi|410037475|ref|XP_003950235.1| PREDICTED: uncharacterized protein LOC460682 [Pan troglodytes]
gi|410951818|ref|XP_003982590.1| PREDICTED: cellular nucleic acid-binding protein isoform 3 [Felis
catus]
gi|16549164|dbj|BAB70769.1| unnamed protein product [Homo sapiens]
gi|119599677|gb|EAW79271.1| zinc finger protein 9 (a cellular retroviral nucleic acid binding
protein), isoform CRA_a [Homo sapiens]
gi|119599680|gb|EAW79274.1| zinc finger protein 9 (a cellular retroviral nucleic acid binding
protein), isoform CRA_a [Homo sapiens]
Length = 167
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 44 CYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 100
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 101 CD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSK 142
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 143 TSEVNCYRCGESGH 156
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 62/148 (41%), Gaps = 31/148 (20%)
Query: 183 CYNCGEEGHMAVNCRSA---------------VKRKKPCFVCGSLEHGVRQCSKAQD-CF 226
C+ CG GH A C + + C+ CG H + C +D C+
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRDICYRCGESGHLAKDCDLQEDACY 65
Query: 227 ICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFG 286
C +GGH AKDC + + + Q C CG GH C D E +CY C FG
Sbjct: 66 NCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCGEFG 116
Query: 287 HLCCVNISDAVPGEVSCFRCGQLGHTGL 314
H+ D +V C+RCG+ GH +
Sbjct: 117 HI----QKDCT--KVKCYRCGETGHVAI 138
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 63 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 122
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 123 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 157
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 79 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 135
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 136 VAINCS-------KTSEVNCYRCGESGH 156
Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 43/124 (34%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKSGF-----------QNAQVCLKCGDSGHDMFSCRNSYS 270
+ +CF C + GH A++CP G + +C +CG+SGH C
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRDICYRCGESGHLAKDC----- 57
Query: 271 LDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----------CFRCG 307
DL+E CY C GH+ CC N PG ++ C+ CG
Sbjct: 58 --DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDHADEQKCYSCG 113
Query: 308 QLGH 311
+ GH
Sbjct: 114 EFGH 117
>gi|387914596|gb|AFK10907.1| cellular nucleic acid-binding protein-like protein [Callorhinchus
milii]
Length = 167
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 44 CYRCGESGHLAKDCDL---QEDACYNCGKGGHIAKDCKEPKKEREQCCYNCGKPGHLARD 100
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 101 CD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSK 142
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 143 TSEVNCYRCGEAGH 156
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 62/148 (41%), Gaps = 31/148 (20%)
Query: 183 CYNCGEEGHMAVNCRSA---------------VKRKKPCFVCGSLEHGVRQCSKAQD-CF 226
C+ CG GH A C + + C+ CG H + C +D C+
Sbjct: 6 CFKCGRTGHWARECPTGGGRVRGIRGRCKIGFTAARDICYRCGESGHLAKDCDLQEDACY 65
Query: 227 ICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFG 286
C KGGH AKDC + K + Q C CG GH C D E +CY C FG
Sbjct: 66 NCGKGGHIAKDCKEPKK---EREQCCYNCGKPGHLARDC------DHADEQKCYSCGEFG 116
Query: 287 HLCCVNISDAVPGEVSCFRCGQLGHTGL 314
H+ D +V C+RCG+ GH +
Sbjct: 117 HI----QKDCT--KVKCYRCGETGHVAI 138
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG+ GH+A +C+ K R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 63 ACYNCGKGGHIAKDCKEPKKEREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 122
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 123 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGEAGHL 157
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 79 EPKKEREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 135
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG++GH
Sbjct: 136 VAINCS-------KTSEVNCYRCGEAGH 156
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 43/124 (34%)
Query: 222 AQDCFICKKGGHRAKDCPDKH----------KSGFQNAQ-VCLKCGDSGHDMFSCRNSYS 270
+ +CF C + GH A++CP K GF A+ +C +CG+SGH C
Sbjct: 3 SNECFKCGRTGHWARECPTGGGRVRGIRGRCKIGFTAARDICYRCGESGHLAKDC----- 57
Query: 271 LDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----------CFRCG 307
DL+E CY C GH+ CC N PG ++ C+ CG
Sbjct: 58 --DLQEDACYNCGKGGHIAKDCKEPKKEREQCCYNCGK--PGHLARDCDHADEQKCYSCG 113
Query: 308 QLGH 311
+ GH
Sbjct: 114 EFGH 117
>gi|358346811|ref|XP_003637458.1| Transcription elongation factor SPT6 [Medicago truncatula]
gi|355503393|gb|AES84596.1| Transcription elongation factor SPT6 [Medicago truncatula]
Length = 2159
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 60/154 (38%), Gaps = 24/154 (15%)
Query: 182 TCYNCGEEGHMAVNC------RSAVKRKKPCFVCGSLEHGVRQCSK-----------AQD 224
+CY CGE GHMA C C+ CG H R+C++
Sbjct: 1430 SCYKCGESGHMARECTQEGGGGGGRGGGGSCYKCGESGHMARECTQEGGGGGRGGGGGGT 1489
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQV--CLKCGDSGHDMFSC-RNSYSLDDLKEVQCYI 281
C+ C + GH A+DC + G C KCG+SGH C + CY
Sbjct: 1490 CYKCGESGHMARDCTQEGGGGGGRGGGGSCYKCGESGHMARECTQEGGGGGRGGGGTCYK 1549
Query: 282 CRCFGHLC--CVN--ISDAVPGEVSCFRCGQLGH 311
C GH+ C G +C++CG+ GH
Sbjct: 1550 CGESGHMARECTQEGGGGGGRGGGACYKCGESGH 1583
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 59/155 (38%), Gaps = 25/155 (16%)
Query: 182 TCYNCGEEGHMAVNC------RSAVKRKKPCFVCGSLEHGVRQCSK----------AQDC 225
+CY CGE GHMA C C+ CG H R+C++ C
Sbjct: 1401 SCYKCGESGHMARECTQEGGGGGGRGGGGSCYKCGESGHMARECTQEGGGGGGRGGGGSC 1460
Query: 226 FICKKGGHRAKDCPDK---HKSGFQNAQVCLKCGDSGHDMFSCRN--SYSLDDLKEVQCY 280
+ C + GH A++C + G C KCG+SGH C CY
Sbjct: 1461 YKCGESGHMARECTQEGGGGGRGGGGGGTCYKCGESGHMARDCTQEGGGGGGRGGGGSCY 1520
Query: 281 ICRCFGHLC--CVN--ISDAVPGEVSCFRCGQLGH 311
C GH+ C G +C++CG+ GH
Sbjct: 1521 KCGESGHMARECTQEGGGGGRGGGGTCYKCGESGH 1555
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 58/156 (37%), Gaps = 26/156 (16%)
Query: 182 TCYNCGEEGHMAVNC------RSAVKRKKPCFVCGSLEHGVRQCSK----------AQDC 225
C+ CGE GHMA C C+ CG H R+C++ C
Sbjct: 1372 ACHKCGESGHMARECTQEGGGGGGRGGGGSCYKCGESGHMARECTQEGGGGGGRGGGGSC 1431
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQV--CLKCGDSGHDMFSCRN---SYSLDDLKEVQCY 280
+ C + GH A++C + G C KCG+SGH C CY
Sbjct: 1432 YKCGESGHMARECTQEGGGGGGRGGGGSCYKCGESGHMARECTQEGGGGGRGGGGGGTCY 1491
Query: 281 ICRCFGHLC--CVN---ISDAVPGEVSCFRCGQLGH 311
C GH+ C G SC++CG+ GH
Sbjct: 1492 KCGESGHMARDCTQEGGGGGGRGGGGSCYKCGESGH 1527
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 16/100 (16%)
Query: 182 TCYNCGEEGHMAVNC------RSAVKRKKPCFVCGSLEHGVRQCSK---------AQDCF 226
TCY CGE GHMA +C C+ CG H R+C++ C+
Sbjct: 1489 TCYKCGESGHMARDCTQEGGGGGGRGGGGSCYKCGESGHMARECTQEGGGGGRGGGGTCY 1548
Query: 227 ICKKGGHRAKDCP-DKHKSGFQNAQVCLKCGDSGHDMFSC 265
C + GH A++C + G + C KCG+SGH C
Sbjct: 1549 KCGESGHMARECTQEGGGGGGRGGGACYKCGESGHMAREC 1588
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 32/116 (27%)
Query: 182 TCYNCGEEGHMAVNC---------RSAVKRKKPCFVCGSLEHGVRQCSK----------- 221
CY CGE GHMA C R + C+ CG H R+C++
Sbjct: 1964 ACYKCGESGHMARECTQEGGGGGGRGGGRGGGACYKCGESGHMARECTQEGGGGGGWGGG 2023
Query: 222 -------AQDCFICKKGGHRAKDCPDK-----HKSGFQNAQVCLKCGDSGHDMFSC 265
C+ C + GH A++C + + G + C KCG+SGH C
Sbjct: 2024 GRGGGSGGGACYKCGESGHMARECTQEGGGGGGRGGGRGGGACYKCGESGHMAREC 2079
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 61/185 (32%), Gaps = 55/185 (29%)
Query: 182 TCYNCGEEGHMAVNC------------RSAVKRKKPCFVCGSLEHGVRQCSK-------- 221
CY CGE GHMA C R + C+ CG H R+C++
Sbjct: 1929 ACYKCGESGHMARECTQEGGGGRGGGGRGGGRGGGACYKCGESGHMARECTQEGGGGGGR 1988
Query: 222 -----AQDCFICKKGGHRAKDCPDK----------HKSGFQNAQVCLKCGDSGHDMFSCR 266
C+ C + GH A++C + + G C KCG+SGH C
Sbjct: 1989 GGGRGGGACYKCGESGHMARECTQEGGGGGGWGGGGRGGGSGGGACYKCGESGHMARECT 2048
Query: 267 N-----SYSLDDLKEVQCYICRCFGHLC--CVN-------------ISDAVPGEVSCFRC 306
CY C GH+ C G +C++C
Sbjct: 2049 QEGGGGGGRGGGRGGGACYKCGESGHMARECTQEGGGGGGGGWGGGGRGGGSGGGACYKC 2108
Query: 307 GQLGH 311
G+ GH
Sbjct: 2109 GESGH 2113
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 44/125 (35%), Gaps = 38/125 (30%)
Query: 182 TCYNCGEEGHMAVNC---------RSAVKRKKPCFVCGSLEHGVRQCSK----------- 221
CY CGE GHMA C R + C+ CG H R+C++
Sbjct: 2033 ACYKCGESGHMARECTQEGGGGGGRGGGRGGGACYKCGESGHMARECTQEGGGGGGGGWG 2092
Query: 222 ---------AQDCFICKKGGHRAKDCPDKHKSGFQNAQV---------CLKCGDSGHDMF 263
C+ C + GH A+DC + G C KCG+SGH
Sbjct: 2093 GGGRGGGSGGGACYKCGESGHMARDCTQEGGGGGGWGGGGRGGGSGGNCYKCGESGHFAR 2152
Query: 264 SCRNS 268
C S
Sbjct: 2153 ECPAS 2157
>gi|116197715|ref|XP_001224669.1| hypothetical protein CHGG_07013 [Chaetomium globosum CBS 148.51]
gi|88178292|gb|EAQ85760.1| hypothetical protein CHGG_07013 [Chaetomium globosum CBS 148.51]
Length = 200
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 66/161 (40%), Gaps = 30/161 (18%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-----------KA 222
D P+RG CYNCG EGHM+ +C K K C+ CG H R C
Sbjct: 42 DCPNRGAAKCYNCGGEGHMSRDCPEGPKDTKTCYRCGQPGHISRNCPTDGGGGHSGGQSG 101
Query: 223 QDCFICKKGGHRAKDCPDKHKSGFQNA-----------QVCLKCGDSGHDMFSCRNSYSL 271
+C+ C + GH A++C + G + C CG GH S
Sbjct: 102 AECYKCGEIGHIARNCSKGNAYGGGYGGGGFGGGGYGQKTCYSCGGVGH--------VSR 153
Query: 272 DDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHT 312
D + +CY C GH+ ++ GE C++C Q GH
Sbjct: 154 DCVNGSKCYNCGVSGHVSRDCPKESTGGEKICYKCQQPGHV 194
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 18/100 (18%)
Query: 183 CYNCGEEGHMAVNCRSA---------------VKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
CY CGE GH+A NC +K C+ CG + H R C C+
Sbjct: 104 CYKCGEIGHIARNCSKGNAYGGGYGGGGFGGGGYGQKTCYSCGGVGHVSRDCVNGSKCYN 163
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
C GH ++DCP + G ++C KC GH C N
Sbjct: 164 CGVSGHVSRDCPKESTGG---EKICYKCQQPGHVQSQCPN 200
>gi|58004792|gb|AAW62457.1| cellular nucleic acid binding protein mutant 2-7 [synthetic
construct]
Length = 128
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 5 CYRCGESGHLAKDCDL---QEDACYNCGRGGHIAKDCKEPRKEREQCCYNCGKPGHLARD 61
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 62 CE------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGDTGH---VAINCSK 103
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 104 TSEVNCYRCGESGH 117
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ K R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 24 ACYNCGRGGHIAKDCKEPRKEREQCCYNCGKPGHLARDCEHADEQKCYSCGEFGHIQKDC 83
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CGD+GH +C + EV CY C GHL
Sbjct: 84 ---------TKVKCYRCGDTGHVAINCSKT------SEVNCYRCGESGHL 118
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 16/110 (14%)
Query: 206 CFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFS 264
C+ CG H + C +D C+ C +GGH AKDC + K + Q C CG GH
Sbjct: 5 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPRK---EREQCCYNCGKPGHLARD 61
Query: 265 CRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C ++ E +CY C FGH+ D +V C+RCG GH +
Sbjct: 62 CEHA------DEQKCYSCGEFGHI----QKDCT--KVKCYRCGDTGHVAI 99
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C GH
Sbjct: 40 EPRKEREQCCYNCGKPGHLARDCEHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGDTGH 96
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 97 VAINCS-------KTSEVNCYRCGESGH 117
>gi|358388038|gb|EHK25632.1| hypothetical protein TRIVIDRAFT_167877 [Trichoderma virens Gv29-8]
Length = 178
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 66/159 (41%), Gaps = 29/159 (18%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA--------QDC 225
D P +G CYNCG EGH++ +C +K K C+ CG H R C +A +C
Sbjct: 21 DCPTKGPAKCYNCGGEGHISRDCTEPMKDNKSCYKCGQQGHISRDCPQAGGAGSGQSTEC 80
Query: 226 FICKKGGHRAKDCPDKHKSGFQN-------------AQVCLKCGDSGHDMFSCRNSYSLD 272
+ C + GH A+ CP N + C CG GH C N
Sbjct: 81 YKCGEKGHIARSCPKSGGGFGGNSYGGNSGGYGGGAGKTCYSCGGYGHMSRECVNG---- 136
Query: 273 DLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
++CY C GH ++ GE C++C Q GH
Sbjct: 137 ----MKCYNCGESGHYSRDCPKESAGGEKICYKCQQSGH 171
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 63/149 (42%), Gaps = 28/149 (18%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA----QDCFICKKGGHRAKD 237
CY+CG GH A +C K C+ CG H R C++ + C+ C + GH ++D
Sbjct: 8 ACYSCGSTGHQARDC--PTKGPAKCYNCGGEGHISRDCTEPMKDNKSCYKCGQQGHISRD 65
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQ-------------CYICRC 284
CP +G + C KCG+ GH SC S CY C
Sbjct: 66 CPQAGGAGSGQSTECYKCGEKGHIARSCPKSGGGFGGNSYGGNSGGYGGGAGKTCYSCGG 125
Query: 285 FGHLC--CVNISDAVPGEVSCFRCGQLGH 311
+GH+ CVN + C+ CG+ GH
Sbjct: 126 YGHMSRECVN-------GMKCYNCGESGH 147
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 20/102 (19%)
Query: 183 CYNCGEEGHMAVNC-----------------RSAVKRKKPCFVCGSLEHGVRQCSKAQDC 225
CY CGE+GH+A +C K C+ CG H R+C C
Sbjct: 80 CYKCGEKGHIARSCPKSGGGFGGNSYGGNSGGYGGGAGKTCYSCGGYGHMSRECVNGMKC 139
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
+ C + GH ++DCP + G ++C KC SGH C N
Sbjct: 140 YNCGESGHYSRDCPKESAGG---EKICYKCQQSGHVQAQCPN 178
>gi|361124091|gb|EHK96212.1| putative ATP-dependent RNA helicase glh-4 [Glarea lozoyensis 74030]
Length = 452
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 62/139 (44%), Gaps = 19/139 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHRAK 236
+C+NC E GH +C K C C + H ++C++ + +C C + GH AK
Sbjct: 253 SCFNCSEVGHRMRDCPVPRVDKFACRNCKASGHSSKECTEPRSAEGVECKKCNETGHFAK 312
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDA 296
DCP G A C CG+ GH C N K+VQC C FGH V
Sbjct: 313 DCPQGGGGGGGGA--CHNCGEEGHRKQDCTNE------KKVQCRNCDEFGH---VGRDCP 361
Query: 297 VP---GEVSCFRCGQLGHT 312
+P V+C C + GHT
Sbjct: 362 LPRDYSRVTCTNCQKTGHT 380
>gi|334342426|ref|XP_001378413.2| PREDICTED: cellular nucleic acid-binding protein-like isoform 1
[Monodelphis domestica]
gi|395516728|ref|XP_003762539.1| PREDICTED: cellular nucleic acid-binding protein isoform 1
[Sarcophilus harrisii]
Length = 177
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 54 CYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 110
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 111 CDHA------DEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSK 152
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 153 TSEVNCYRCGESGH 166
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 73 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 132
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 133 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 167
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 63/158 (39%), Gaps = 41/158 (25%)
Query: 183 CYNCGEEGHMAVNCRSA-----------------------VKRKKP--CFVCGSLEHGVR 217
C+ CG GH A C + V P C+ CG H +
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSARGFQFVSSSLPDICYRCGESGHLAK 65
Query: 218 QCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKE 276
C +D C+ C +GGH AKDC + + + Q C CG GH C D E
Sbjct: 66 DCDLQEDACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADE 116
Query: 277 VQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
+CY C FGH+ D +V C+RCG+ GH +
Sbjct: 117 QKCYSCGEFGHI----QKDCT--KVKCYRCGETGHVAI 148
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 89 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 145
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 146 VAINCS-------KTSEVNCYRCGESGH 166
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 53/134 (39%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKS----------------GFQNAQ-----VCLKCGDSGH 260
+ +CF C + GH A++CP GFQ +C +CG+SGH
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSARGFQFVSSSLPDICYRCGESGH 62
Query: 261 DMFSCRNSYSLDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----- 302
C DL+E CY C GH+ CC N PG ++
Sbjct: 63 LAKDC-------DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDH 113
Query: 303 -----CFRCGQLGH 311
C+ CG+ GH
Sbjct: 114 ADEQKCYSCGEFGH 127
>gi|26452133|dbj|BAC43155.1| unknown protein [Arabidopsis thaliana]
Length = 268
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 14/117 (11%)
Query: 206 CFVCGSLEHGVRQCSKAQD------CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
CF+C S H + C + + C C++ GH K+CP+K+ + ++C CGD+G
Sbjct: 76 CFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSER-KLCYNCGDTG 134
Query: 260 HDMFSCRNSYSLDD--LKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
H + C Y ++D K C+IC+ GH+ C N P C CG + H
Sbjct: 135 HSLSHC--PYPMEDGGTKFASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAH 189
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 11/101 (10%)
Query: 181 QTCYNCGEEGHMAVNC---RSAVKRKKPCFVCGSLEHGVRQC--------SKAQDCFICK 229
+ C C GH NC + +K C+ CG H + C +K CFICK
Sbjct: 99 KICLQCRRRGHSLKNCPEKNNESSERKLCYNCGDTGHSLSHCPYPMEDGGTKFASCFICK 158
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYS 270
GH +K+CP+ + C CG H + C + ++
Sbjct: 159 GQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKDCPDKFN 199
>gi|89269563|emb|CAJ82604.1| zinc finger protein 9 (a cellular retroviral nucleic acid binding
protein) [Xenopus (Silurana) tropicalis]
gi|115292111|gb|AAI22021.1| cnbp protein [Xenopus (Silurana) tropicalis]
Length = 177
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 54 CYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPRKEREQCCYNCGKPGHLARD 110
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 111 CD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSK 152
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 153 TSEVNCYRCGESGH 166
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ K R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 73 ACYNCGRGGHIAKDCKEPRKEREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 132
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 133 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 167
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 52/110 (47%), Gaps = 16/110 (14%)
Query: 206 CFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFS 264
C+ CG H + C +D C+ C +GGH AKDC + K + Q C CG GH
Sbjct: 54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPRK---EREQCCYNCGKPGHLARD 110
Query: 265 CRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C D E +CY C FGH+ D +V C+RCG+ GH +
Sbjct: 111 C------DHADEQKCYSCGEFGHI----QKDCT--KVKCYRCGETGHVAI 148
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 89 EPRKEREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 145
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 146 VAINCS-------KTSEVNCYRCGESGH 166
>gi|149642096|ref|XP_001505515.1| PREDICTED: cellular nucleic acid-binding protein-like isoform 2
[Ornithorhynchus anatinus]
Length = 177
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 54 CYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 110
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 111 CD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSK 152
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 153 TSEVNCYRCGESGH 166
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 73 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 132
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 133 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 167
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 63/158 (39%), Gaps = 41/158 (25%)
Query: 183 CYNCGEEGHMAVNCRSA-----------------------VKRKKP--CFVCGSLEHGVR 217
C+ CG GH A C + V P C+ CG H +
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGLRSRGRGGFSSGRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 218 QCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKE 276
C +D C+ C +GGH AKDC + + + Q C CG GH C D E
Sbjct: 66 DCDLQEDACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADE 116
Query: 277 VQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
+CY C FGH+ D +V C+RCG+ GH +
Sbjct: 117 QKCYSCGEFGHI----QKDCT--KVKCYRCGETGHVAI 148
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 89 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 145
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 146 VAINCS-------KTSEVNCYRCGESGH 166
>gi|391333168|ref|XP_003740993.1| PREDICTED: uncharacterized protein LOC100904700 [Metaseiulus
occidentalis]
Length = 1180
Score = 58.9 bits (141), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRA--KDC 238
Q C+NC + GH+A C+ + C+ CG +H + C + C++C K GHRA + C
Sbjct: 210 QCCFNCQKFGHLAHECKEGKAEGRRCYRCGKEDHIAKDCEASPSCYVCGKNGHRADSRSC 269
Query: 239 PDKHKSG 245
P + +
Sbjct: 270 PAQREQA 276
Score = 41.2 bits (95), Expect = 0.64, Method: Composition-based stats.
Identities = 53/211 (25%), Positives = 84/211 (39%), Gaps = 42/211 (19%)
Query: 98 DDVIIEDVKSSDKKRIRVRKKKKKE------ADKIEIEDQSVI--VRKEEQKVETADNG- 148
D V +E + + IR++ ++ +E A+K+ + +++ V+ +V A G
Sbjct: 73 DGVELEKISITKSGEIRIQVRETREGGRKNFAEKLSQKAEALQAEVKAVSAQVPIAIRGI 132
Query: 149 DEGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKP--C 206
D+ V E+ + +V + P + N GE R+AV R P
Sbjct: 133 DDTVDKDEVEEALVKAGV---------PKEEVENKVNLGEVQAGRAGTRTAVMRVSPSRA 183
Query: 207 FVCGSLEH------GVR----QCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCG 256
F+ L+ G R Q + Q CF C+K GH A +C K G + C +CG
Sbjct: 184 FMLLQLQELRVGWSGCRCRITQFEQPQCCFNCQKFGHLAHEC----KEGKAEGRRCYRCG 239
Query: 257 DSGHDMFSCRNSYSLDDLKEVQCYICRCFGH 287
H C S S CY+C GH
Sbjct: 240 KEDHIAKDCEASPS--------CYVCGKNGH 262
>gi|401420364|ref|XP_003874671.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490907|emb|CBZ26171.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 566
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 20/115 (17%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
CY C + GH+ C + C+ CG+ H + C CF C GHR+ +CP +
Sbjct: 128 CYQCHQLGHIMTTCP-----QTRCYNCGTFGHSSQICHSKPHCFHCSHSGHRSSECPMRS 182
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC----------RNSYSLDDLKEVQCYICRCFGH 287
K +VC +C + GH+ +C R + + EV C +C GH
Sbjct: 183 K-----GRVCYQCNEPGHEAANCPQGQLCRMCHRPGHFVAHCPEVVCNLCHVKGH 232
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 28/126 (22%)
Query: 206 CFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQ--------------- 250
C C + H R C K + C +C + GH +DCP ++ +
Sbjct: 45 CNNCKTRGHLRRNCPKIK-CNLCNRLGHYRRDCPQDASKRVRSVEGAPREEVNLDEEYRW 103
Query: 251 -VCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQL 309
VC CG S H +C Y + ++CY C GH I P + C+ CG
Sbjct: 104 SVCRNCGSSRHIQANCPVRY-----QALECYQCHQLGH-----IMTTCP-QTRCYNCGTF 152
Query: 310 GHTGLV 315
GH+ +
Sbjct: 153 GHSSQI 158
>gi|242791199|ref|XP_002481710.1| zinc knuckle transcription factor (CnjB), putative [Talaromyces
stipitatus ATCC 10500]
gi|218718298|gb|EED17718.1| zinc knuckle transcription factor (CnjB), putative [Talaromyces
stipitatus ATCC 10500]
Length = 446
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 60/137 (43%), Gaps = 16/137 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHRAKD 237
C NC E GH A +C K K C CG+ +H +C++ +C C GH AKD
Sbjct: 290 CVNCSEVGHRARDCTQPRKSKFGCRNCGASDHKAAECTEPPNMDNVECRRCNDTGHFAKD 349
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISD 295
CP S + A+ C KCG H C ++D + C C GH C D
Sbjct: 350 CP----SASKVAKACRKCGAEDHLSRDCDQPQNMD---LITCNNCDETGHYGRDCPKPRD 402
Query: 296 AVPGEVSCFRCGQLGHT 312
V C CG++GHT
Sbjct: 403 W--SRVKCTNCGEMGHT 417
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFIC 228
+PP+ C C + GH A +C SA K K C CG+ +H R C + Q+ C C
Sbjct: 328 EPPNMDNVECRRCNDTGHFAKDCPSASKVAKACRKCGAEDHLSRDCDQPQNMDLITCNNC 387
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
+ GH +DCP K + C CG+ GH C + D
Sbjct: 388 DETGHYGRDCP---KPRDWSRVKCTNCGEMGHTHRRCSKPAAED 428
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 11/96 (11%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAK 236
TC NCG+ GH +C + CF CG H C + C IC + GH A
Sbjct: 44 TCRNCGQSGHFVRDCPEPRQGGGGGCFNCGEEGHNKADCPHPRVFKGTCRICNEEGHPAM 103
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
+CP K A+VC C GH + C+ + D
Sbjct: 104 ECPQK------PAEVCKNCRKEGHKIAECKENRQFD 133
>gi|345329901|ref|XP_003431440.1| PREDICTED: cellular nucleic acid-binding protein-like
[Ornithorhynchus anatinus]
Length = 170
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 47 CYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 103
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 104 CD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSK 145
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 146 TSEVNCYRCGESGH 159
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 63/151 (41%), Gaps = 34/151 (22%)
Query: 183 CYNCGEEGHMAVNCRSA----------------VKRKKP--CFVCGSLEHGVRQCSKAQD 224
C+ CG GH A C + V P C+ CG H + C +D
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGLRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 65
Query: 225 -CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C +GGH AKDC + + + Q C CG GH C D E +CY C
Sbjct: 66 ACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCG 116
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
FGH+ D +V C+RCG+ GH +
Sbjct: 117 EFGHI----QKDCT--KVKCYRCGETGHVAI 141
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 66 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 125
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 126 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 160
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 82 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 138
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 139 VAINCS-------KTSEVNCYRCGESGH 159
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 49/125 (39%), Gaps = 46/125 (36%)
Query: 224 DCFICKKGGHRAKDCPD---------KHKSGFQNAQ-----VCLKCGDSGHDMFSCRNSY 269
+CF C + GH A++CP GFQ +C +CG+SGH C
Sbjct: 5 ECFKCGRSGHWARECPTGGGRGRGLRSRGRGFQFVSSSLPDICYRCGESGHLAKDC---- 60
Query: 270 SLDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----------CFRC 306
DL+E CY C GH+ CC N PG ++ C+ C
Sbjct: 61 ---DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDHADEQKCYSC 115
Query: 307 GQLGH 311
G+ GH
Sbjct: 116 GEFGH 120
>gi|449473367|ref|XP_002187556.2| PREDICTED: cellular nucleic acid-binding protein isoform 1
[Taeniopygia guttata]
Length = 170
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 47 CYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 103
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 104 CD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSK 145
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 146 TSEVNCYRCGESGH 159
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 63/151 (41%), Gaps = 34/151 (22%)
Query: 183 CYNCGEEGHMAVNCRSA----------------VKRKKP--CFVCGSLEHGVRQCSKAQD 224
C+ CG GH A C + + P C+ CG H + C +D
Sbjct: 6 CFKCGRTGHWARECPTGMGRGRGMRSRGRGFQFMSSSLPDICYRCGESGHLAKDCDLQED 65
Query: 225 -CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C +GGH AKDC + + + Q C CG GH C D E +CY C
Sbjct: 66 ACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCG 116
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
FGH+ D +V C+RCG+ GH +
Sbjct: 117 EFGHI----QKDCT--KVKCYRCGETGHVAI 141
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 66 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 125
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 126 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 160
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 82 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 138
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 139 VAINCS-------KTSEVNCYRCGESGH 159
Score = 37.4 bits (85), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 50/127 (39%), Gaps = 46/127 (36%)
Query: 222 AQDCFICKKGGHRAKDCPD---------KHKSGFQNAQ-----VCLKCGDSGHDMFSCRN 267
+ +CF C + GH A++CP GFQ +C +CG+SGH C
Sbjct: 3 SNECFKCGRTGHWARECPTGMGRGRGMRSRGRGFQFMSSSLPDICYRCGESGHLAKDC-- 60
Query: 268 SYSLDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----------CF 304
DL+E CY C GH+ CC N PG ++ C+
Sbjct: 61 -----DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDHADEQKCY 113
Query: 305 RCGQLGH 311
CG+ GH
Sbjct: 114 SCGEFGH 120
>gi|291393360|ref|XP_002713212.1| PREDICTED: zinc finger protein 9 isoform 4 [Oryctolagus cuniculus]
gi|296225970|ref|XP_002758718.1| PREDICTED: cellular nucleic acid-binding protein isoform 3
[Callithrix jacchus]
gi|332261813|ref|XP_003279961.1| PREDICTED: cellular nucleic acid-binding protein isoform 5
[Nomascus leucogenys]
gi|338714532|ref|XP_003363103.1| PREDICTED: cellular nucleic acid-binding protein-like [Equus
caballus]
gi|397518586|ref|XP_003829465.1| PREDICTED: cellular nucleic acid-binding protein isoform 4 [Pan
paniscus]
gi|402887093|ref|XP_003906939.1| PREDICTED: cellular nucleic acid-binding protein [Papio anubis]
gi|410037477|ref|XP_003950236.1| PREDICTED: uncharacterized protein LOC460682 [Pan troglodytes]
gi|410951820|ref|XP_003982591.1| PREDICTED: cellular nucleic acid-binding protein isoform 4 [Felis
catus]
gi|194389826|dbj|BAG60429.1| unnamed protein product [Homo sapiens]
Length = 160
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 63/141 (44%), Gaps = 24/141 (17%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP--------CFVCGSLEHGVRQCSKAQD-CFICKKGGH 233
C+ CG GH A C + R + C+ CG H + C +D C+ C +GGH
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRDICYRCGESGHLAKDCDLQEDACYNCGRGGH 65
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNI 293
AKDC + + + Q C CG GH C D E +CY C FGH+
Sbjct: 66 IAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCGEFGHI----Q 112
Query: 294 SDAVPGEVSCFRCGQLGHTGL 314
D +V C+RCG+ GH +
Sbjct: 113 KDCT--KVKCYRCGETGHVAI 131
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 37 CYRCGESGHLAKDCDL---QEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 93
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 94 CD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSK 135
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 136 TSEVNCYRCGESGH 149
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 56 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 115
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 116 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 150
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 72 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 128
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 129 VAINCS-------KTSEVNCYRCGESGH 149
Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 36/117 (30%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKSGFQNAQ----VCLKCGDSGHDMFSCRNSYSLDDLKEV 277
+ +CF C + GH A++CP G +C +CG+SGH C DL+E
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRDICYRCGESGHLAKDC-------DLQED 55
Query: 278 QCYICRCFGHL-------------CCVNISDAVPGEVS----------CFRCGQLGH 311
CY C GH+ CC N PG ++ C+ CG+ GH
Sbjct: 56 ACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDHADEQKCYSCGEFGH 110
>gi|54696092|gb|AAV38418.1| zinc finger protein 9 (a cellular retroviral nucleic acid binding
protein) [synthetic construct]
gi|61368826|gb|AAX43243.1| zinc finger protein 9 [synthetic construct]
Length = 171
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 47 CYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 103
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 104 CD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSK 145
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 146 TSEVNCYRCGESGH 159
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 63/151 (41%), Gaps = 34/151 (22%)
Query: 183 CYNCGEEGHMAVNCRSA----------------VKRKKP--CFVCGSLEHGVRQCSKAQD 224
C+ CG GH A C + V P C+ CG H + C +D
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 65
Query: 225 -CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C +GGH AKDC + + + Q C CG GH C D E +CY C
Sbjct: 66 ACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCG 116
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
FGH+ D +V C+RCG+ GH +
Sbjct: 117 EFGHI----QKDCT--KVKCYRCGETGHVAI 141
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 66 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 125
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 126 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 160
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 82 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 138
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 139 VAINCS-------KTSEVNCYRCGESGH 159
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 50/127 (39%), Gaps = 46/127 (36%)
Query: 222 AQDCFICKKGGHRAKDCPD---------KHKSGFQNAQ-----VCLKCGDSGHDMFSCRN 267
+ +CF C + GH A++CP GFQ +C +CG+SGH C
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC-- 60
Query: 268 SYSLDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----------CF 304
DL+E CY C GH+ CC N PG ++ C+
Sbjct: 61 -----DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDHADEQKCY 113
Query: 305 RCGQLGH 311
CG+ GH
Sbjct: 114 SCGEFGH 120
>gi|77735399|ref|NP_001029396.1| cellular nucleic acid-binding protein [Bos taurus]
gi|157909784|ref|NP_001103216.1| cellular nucleic acid-binding protein isoform 3 [Mus musculus]
gi|187608750|ref|NP_001120668.1| cellular nucleic acid-binding protein isoform 6 [Homo sapiens]
gi|356582435|ref|NP_001239194.1| cellular nucleic acid-binding protein isoform 2 [Canis lupus
familiaris]
gi|332261807|ref|XP_003279958.1| PREDICTED: cellular nucleic acid-binding protein isoform 2
[Nomascus leucogenys]
gi|332817847|ref|XP_003310041.1| PREDICTED: uncharacterized protein LOC460682 isoform 2 [Pan
troglodytes]
gi|332817851|ref|XP_003310042.1| PREDICTED: uncharacterized protein LOC460682 isoform 3 [Pan
troglodytes]
gi|334342424|ref|XP_003341812.1| PREDICTED: cellular nucleic acid-binding protein-like isoform 2
[Monodelphis domestica]
gi|338714526|ref|XP_003363100.1| PREDICTED: cellular nucleic acid-binding protein-like [Equus
caballus]
gi|348553987|ref|XP_003462807.1| PREDICTED: cellular nucleic acid-binding protein-like isoform 2
[Cavia porcellus]
gi|354482849|ref|XP_003503608.1| PREDICTED: cellular nucleic acid-binding protein isoform 2
[Cricetulus griseus]
gi|390475371|ref|XP_003734945.1| PREDICTED: cellular nucleic acid-binding protein [Callithrix
jacchus]
gi|395516730|ref|XP_003762540.1| PREDICTED: cellular nucleic acid-binding protein isoform 2
[Sarcophilus harrisii]
gi|397518582|ref|XP_003829463.1| PREDICTED: cellular nucleic acid-binding protein isoform 2 [Pan
paniscus]
gi|402887089|ref|XP_003906937.1| PREDICTED: cellular nucleic acid-binding protein [Papio anubis]
gi|410037470|ref|XP_003950233.1| PREDICTED: uncharacterized protein LOC460682 [Pan troglodytes]
gi|410951816|ref|XP_003982589.1| PREDICTED: cellular nucleic acid-binding protein isoform 2 [Felis
catus]
gi|426342038|ref|XP_004036323.1| PREDICTED: cellular nucleic acid-binding protein isoform 2 [Gorilla
gorilla gorilla]
gi|426342046|ref|XP_004036327.1| PREDICTED: cellular nucleic acid-binding protein isoform 6 [Gorilla
gorilla gorilla]
gi|110832801|sp|Q3T0Q6.1|CNBP_BOVIN RecName: Full=Cellular nucleic acid-binding protein; Short=CNBP;
AltName: Full=Zinc finger protein 9
gi|2136380|pir||A55499 zinc finger protein 9 - human
gi|292348|gb|AAA89198.1| nucleic acid binding protein [Mus sp.]
gi|12653049|gb|AAH00288.1| CNBP protein [Homo sapiens]
gi|15928890|gb|AAH14911.1| CNBP protein [Homo sapiens]
gi|55730956|emb|CAH92196.1| hypothetical protein [Pongo abelii]
gi|74207292|dbj|BAE30832.1| unnamed protein product [Mus musculus]
gi|74226825|dbj|BAE27058.1| unnamed protein product [Mus musculus]
gi|74354088|gb|AAI02299.1| CCHC-type zinc finger, nucleic acid binding protein [Bos taurus]
gi|119599678|gb|EAW79272.1| zinc finger protein 9 (a cellular retroviral nucleic acid binding
protein), isoform CRA_b [Homo sapiens]
gi|119599681|gb|EAW79275.1| zinc finger protein 9 (a cellular retroviral nucleic acid binding
protein), isoform CRA_b [Homo sapiens]
gi|149036675|gb|EDL91293.1| cellular nucleic acid binding protein 1, isoform CRA_a [Rattus
norvegicus]
gi|296474617|tpg|DAA16732.1| TPA: cellular nucleic acid-binding protein [Bos taurus]
gi|380816310|gb|AFE80029.1| cellular nucleic acid-binding protein isoform 6 [Macaca mulatta]
gi|383421415|gb|AFH33921.1| cellular nucleic acid-binding protein isoform 6 [Macaca mulatta]
gi|384949298|gb|AFI38254.1| cellular nucleic acid-binding protein isoform 6 [Macaca mulatta]
gi|410221752|gb|JAA08095.1| CCHC-type zinc finger, nucleic acid binding protein [Pan
troglodytes]
gi|410253688|gb|JAA14811.1| CCHC-type zinc finger, nucleic acid binding protein [Pan
troglodytes]
gi|410293498|gb|JAA25349.1| CCHC-type zinc finger, nucleic acid binding protein [Pan
troglodytes]
Length = 170
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 47 CYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 103
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 104 CD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSK 145
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 146 TSEVNCYRCGESGH 159
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 63/151 (41%), Gaps = 34/151 (22%)
Query: 183 CYNCGEEGHMAVNCRSA----------------VKRKKP--CFVCGSLEHGVRQCSKAQD 224
C+ CG GH A C + V P C+ CG H + C +D
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 65
Query: 225 -CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C +GGH AKDC + + + Q C CG GH C D E +CY C
Sbjct: 66 ACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCG 116
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
FGH+ D +V C+RCG+ GH +
Sbjct: 117 EFGHI----QKDCT--KVKCYRCGETGHVAI 141
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 66 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 125
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 126 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 160
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 82 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 138
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 139 VAINCS-------KTSEVNCYRCGESGH 159
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 50/127 (39%), Gaps = 46/127 (36%)
Query: 222 AQDCFICKKGGHRAKDCPD---------KHKSGFQNAQ-----VCLKCGDSGHDMFSCRN 267
+ +CF C + GH A++CP GFQ +C +CG+SGH C
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC-- 60
Query: 268 SYSLDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----------CF 304
DL+E CY C GH+ CC N PG ++ C+
Sbjct: 61 -----DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDHADEQKCY 113
Query: 305 RCGQLGH 311
CG+ GH
Sbjct: 114 SCGEFGH 120
>gi|119599682|gb|EAW79276.1| zinc finger protein 9 (a cellular retroviral nucleic acid binding
protein), isoform CRA_d [Homo sapiens]
gi|383421413|gb|AFH33920.1| cellular nucleic acid-binding protein isoform 3 [Macaca mulatta]
Length = 171
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 48 CYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 104
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 105 CD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSK 146
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 147 TSEVNCYRCGESGH 160
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 63/152 (41%), Gaps = 35/152 (23%)
Query: 183 CYNCGEEGHMAVNCRSA-----------------VKRKKP--CFVCGSLEHGVRQCSKAQ 223
C+ CG GH A C + V P C+ CG H + C +
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFQFVSSSLPDICYRCGESGHLAKDCDLQE 65
Query: 224 D-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYIC 282
D C+ C +GGH AKDC + + + Q C CG GH C D E +CY C
Sbjct: 66 DACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSC 116
Query: 283 RCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
FGH+ D +V C+RCG+ GH +
Sbjct: 117 GEFGHI----QKDCT--KVKCYRCGETGHVAI 142
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 67 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 126
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 127 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 161
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 83 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 139
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 140 VAINCS-------KTSEVNCYRCGESGH 160
Score = 37.7 bits (86), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 47/128 (36%)
Query: 222 AQDCFICKKGGHRAKDCPD----------KHKSGFQNAQ-----VCLKCGDSGHDMFSCR 266
+ +CF C + GH A++CP + + GFQ +C +CG+SGH C
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFQFVSSSLPDICYRCGESGHLAKDC- 61
Query: 267 NSYSLDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----------C 303
DL+E CY C GH+ CC N PG ++ C
Sbjct: 62 ------DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDHADEQKC 113
Query: 304 FRCGQLGH 311
+ CG+ GH
Sbjct: 114 YSCGEFGH 121
>gi|392881264|gb|AFM89464.1| cellular nucleic acid-binding protein-like protein [Callorhinchus
milii]
Length = 167
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 44 CYRCGESGHLAKDCDL---QEDACYNCGKGGHIAKDCKEPKKEREQCCYNCGKPGHLARD 100
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 101 CD------HADEQKCYSCGEFGHIR---------KDCTKVKCYRCGETGH---VAINCSK 142
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 143 TSEVNCYRCGEAGH 156
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 62/148 (41%), Gaps = 31/148 (20%)
Query: 183 CYNCGEEGHMAVNCRSA---------------VKRKKPCFVCGSLEHGVRQCSKAQD-CF 226
C+ CG GH A C + + C+ CG H + C +D C+
Sbjct: 6 CFKCGRTGHWARECPTGGGRVRGIRGRCKIGFTAARDICYRCGESGHLAKDCDLQEDACY 65
Query: 227 ICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFG 286
C KGGH AKDC + K + Q C CG GH C D E +CY C FG
Sbjct: 66 NCGKGGHIAKDCKEPKK---EREQCCYNCGKPGHLARDC------DHADEQKCYSCGEFG 116
Query: 287 HLCCVNISDAVPGEVSCFRCGQLGHTGL 314
H+ D +V C+RCG+ GH +
Sbjct: 117 HI----RKDCT--KVKCYRCGETGHVAI 138
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG+ GH+A +C+ K R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 63 ACYNCGKGGHIAKDCKEPKKEREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIRKDC 122
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 123 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGEAGHL 157
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 79 EPKKEREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIRKDCTKVK-CYRCGETGH 135
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG++GH
Sbjct: 136 VAINCS-------KTSEVNCYRCGEAGH 156
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 43/124 (34%)
Query: 222 AQDCFICKKGGHRAKDCPDKH----------KSGFQNAQ-VCLKCGDSGHDMFSCRNSYS 270
+ +CF C + GH A++CP K GF A+ +C +CG+SGH C
Sbjct: 3 SNECFKCGRTGHWARECPTGGGRVRGIRGRCKIGFTAARDICYRCGESGHLAKDC----- 57
Query: 271 LDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----------CFRCG 307
DL+E CY C GH+ CC N PG ++ C+ CG
Sbjct: 58 --DLQEDACYNCGKGGHIAKDCKEPKKEREQCCYNCGK--PGHLARDCDHADEQKCYSCG 113
Query: 308 QLGH 311
+ GH
Sbjct: 114 EFGH 117
>gi|327265859|ref|XP_003217725.1| PREDICTED: cellular nucleic acid-binding protein-like [Anolis
carolinensis]
Length = 170
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 47 CYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPRREREQCCYNCGKPGHLARD 103
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 104 CD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSK 145
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 146 TSEVNCYRCGESGH 159
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 63/151 (41%), Gaps = 34/151 (22%)
Query: 183 CYNCGEEGHMAVNCRSA----------------VKRKKP--CFVCGSLEHGVRQCSKAQD 224
C+ CG GH A C + + P C+ CG H + C +D
Sbjct: 6 CFKCGRTGHWARECPTGMGRGRGMRSRGRGFQFMSSSLPDICYRCGESGHLAKDCDLQED 65
Query: 225 -CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C +GGH AKDC + + + Q C CG GH C D E +CY C
Sbjct: 66 ACYNCGRGGHIAKDCKEPRR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCG 116
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
FGH+ D +V C+RCG+ GH +
Sbjct: 117 EFGHI----QKDCT--KVKCYRCGETGHVAI 141
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 66 ACYNCGRGGHIAKDCKEPRREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 125
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 126 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 160
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 11/81 (13%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH A +C
Sbjct: 89 QCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGHVAINCS- 144
Query: 241 KHKSGFQNAQV-CLKCGDSGH 260
+ ++V C +CG+SGH
Sbjct: 145 ------KTSEVNCYRCGESGH 159
Score = 37.4 bits (85), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 50/127 (39%), Gaps = 46/127 (36%)
Query: 222 AQDCFICKKGGHRAKDCPD---------KHKSGFQNAQ-----VCLKCGDSGHDMFSCRN 267
+ +CF C + GH A++CP GFQ +C +CG+SGH C
Sbjct: 3 SNECFKCGRTGHWARECPTGMGRGRGMRSRGRGFQFMSSSLPDICYRCGESGHLAKDC-- 60
Query: 268 SYSLDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----------CF 304
DL+E CY C GH+ CC N PG ++ C+
Sbjct: 61 -----DLQEDACYNCGRGGHIAKDCKEPRREREQCCYNCGK--PGHLARDCDHADEQKCY 113
Query: 305 RCGQLGH 311
CG+ GH
Sbjct: 114 SCGEFGH 120
>gi|15237136|ref|NP_200051.1| vascular-related NAC-domain 6 protein [Arabidopsis thaliana]
gi|10177404|dbj|BAB10535.1| unnamed protein product [Arabidopsis thaliana]
gi|90962970|gb|ABE02409.1| At5g52380 [Arabidopsis thaliana]
gi|332008824|gb|AED96207.1| vascular-related NAC-domain 6 protein [Arabidopsis thaliana]
Length = 268
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 14/117 (11%)
Query: 206 CFVCGSLEHGVRQCSKAQD------CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
CF+C S H + C + + C C++ GH K+CP+K+ + ++C CGD+G
Sbjct: 76 CFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEK-KLCYNCGDTG 134
Query: 260 HDMFSCRNSYSLDD--LKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
H + C Y ++D K C+IC+ GH+ C N P C CG + H
Sbjct: 135 HSLSHC--PYPMEDGGTKFASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAH 189
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 11/101 (10%)
Query: 181 QTCYNCGEEGHMAVNC---RSAVKRKKPCFVCGSLEHGVRQC--------SKAQDCFICK 229
+ C C GH NC + KK C+ CG H + C +K CFICK
Sbjct: 99 KICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKFASCFICK 158
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYS 270
GH +K+CP+ + C CG H + C + ++
Sbjct: 159 GQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKDCPDKFN 199
>gi|50471|emb|CAA45345.1| cellular nucleic acid binding protein clone 6 [Mus musculus]
gi|50473|emb|CAA77896.1| cellular nucleic acid binding protein clone 6 [Mus musculus]
Length = 170
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 47 CYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 103
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 104 CD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSK 145
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 146 TSEVNCYRCGESGH 159
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 63/151 (41%), Gaps = 34/151 (22%)
Query: 183 CYNCGEEGHMAVNCRSA----------------VKRKKP--CFVCGSLEHGVRQCSKAQD 224
C+ CG GH A C + V P C+ CG H + C +D
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 65
Query: 225 -CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C +GGH AKDC + + + Q C CG GH C D E +CY C
Sbjct: 66 ACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCG 116
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
FGH+ D +V C+RCG+ GH +
Sbjct: 117 EFGHI----QKDCT--KVKCYRCGETGHVAI 141
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 66 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 125
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 126 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 160
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 82 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 138
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 139 VAINCS-------KTSEVNCYRCGESGH 159
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 46/128 (35%)
Query: 221 KAQDCFICKKGGHRAKDCPD---------KHKSGFQNAQ-----VCLKCGDSGHDMFSCR 266
++ +CF C + GH A++CP GFQ +C +CG+SGH C
Sbjct: 2 RSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC- 60
Query: 267 NSYSLDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----------C 303
DL+E CY C GH+ CC N PG ++ C
Sbjct: 61 ------DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDHADEQKC 112
Query: 304 FRCGQLGH 311
+ CG+ GH
Sbjct: 113 YSCGEFGH 120
>gi|154346046|ref|XP_001568960.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066302|emb|CAM44093.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 573
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 20/115 (17%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
CY C + GHM C + C+ CG+ H + C CF C GHR+ +CP +
Sbjct: 135 CYQCHQLGHMMTTCP-----QTRCYNCGTFGHSSQICHSKPHCFQCSHSGHRSSECPMRS 189
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC----------RNSYSLDDLKEVQCYICRCFGH 287
K ++C +C + GH+ +C R + + EV C +C GH
Sbjct: 190 K-----GRLCYQCNEPGHEAANCPQGQLCRMCHRPGHFVARCPEVVCNLCHVKGH 239
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 52/150 (34%), Gaps = 51/150 (34%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C NC GH+ NC + C +CK+ GH +DCP
Sbjct: 51 VCDNCKTRGHLRRNCPTI------------------------KCNLCKRLGHFRRDCPQD 86
Query: 242 HKSGFQNAQ----------------VCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCF 285
++A+ VC CG S H +C Y + ++CY C
Sbjct: 87 ASKRVRSAENAPCDDVNLDEEYRWSVCRNCGSSRHIQANCPVRY-----QALECYQCHQL 141
Query: 286 GHLCCVNISDAVPGEVSCFRCGQLGHTGLV 315
GH+ P + C+ CG GH+ +
Sbjct: 142 GHM-----MTTCP-QTRCYNCGTFGHSSQI 165
>gi|147899284|ref|NP_001084082.1| cellular nucleic acid binding protein [Xenopus laevis]
gi|1055224|gb|AAA81168.1| cellular nucleic acid binding protein [Xenopus laevis]
Length = 168
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 66/136 (48%), Gaps = 30/136 (22%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 45 CYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPRKEREQCCYNCGKPGHLARD 101
Query: 238 C--PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISD 295
C D+H+ C CG+ GH D +V+CY C GH V I+
Sbjct: 102 CDHADEHR--------CYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINC 141
Query: 296 AVPGEVSCFRCGQLGH 311
+ EV+C+RCG+ GH
Sbjct: 142 SKTSEVNCYRCGESGH 157
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 62/149 (41%), Gaps = 32/149 (21%)
Query: 183 CYNCGEEGHMAVNCRSAV----------------KRKKPCFVCGSLEHGVRQCSKAQD-C 225
C+ CG GH A C + + C+ CG H + C +D C
Sbjct: 6 CFKCGRTGHWARECPTGGGRGRGGGRGRGRGGFSSSRDICYRCGESGHLAKDCDLQEDAC 65
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCF 285
+ C +GGH AKDC + K + Q C CG GH C D E +CY C F
Sbjct: 66 YNCGRGGHIAKDCKEPRK---EREQCCYNCGKPGHLARDC------DHADEHRCYSCGEF 116
Query: 286 GHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
GH+ D +V C+RCG+ GH +
Sbjct: 117 GHI----QKDCT--KVKCYRCGETGHVAI 139
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A + + C+ CG H + C+K + C+ C + GH
Sbjct: 80 EPRKEREQCCYNCGKPGHLARDCDHADEHR--CYSCGEFGHIQKDCTKVK-CYRCGETGH 136
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 137 VAINCS-------KTSEVNCYRCGESGH 157
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 44/125 (35%)
Query: 222 AQDCFICKKGGHRAKDCPD-----------KHKSGFQNAQ-VCLKCGDSGHDMFSCRNSY 269
+ +CF C + GH A++CP + + GF +++ +C +CG+SGH C
Sbjct: 3 SNECFKCGRTGHWARECPTGGGRGRGGGRGRGRGGFSSSRDICYRCGESGHLAKDC---- 58
Query: 270 SLDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----------CFRC 306
DL+E CY C GH+ CC N PG ++ C+ C
Sbjct: 59 ---DLQEDACYNCGRGGHIAKDCKEPRKEREQCCYNCGK--PGHLARDCDHADEHRCYSC 113
Query: 307 GQLGH 311
G+ GH
Sbjct: 114 GEFGH 118
>gi|426249733|ref|XP_004018604.1| PREDICTED: cellular nucleic acid-binding protein isoform 1 [Ovis
aries]
Length = 176
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 57/120 (47%), Gaps = 21/120 (17%)
Query: 175 PPDRGW---QTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFIC 228
PP + W CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C
Sbjct: 62 PPAKDWIRGGPCYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSC 121
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
+ GH KDC C +CG++GH +C + EV CY C GHL
Sbjct: 122 GEFGHIQKDC---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 166
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 60/157 (38%), Gaps = 40/157 (25%)
Query: 183 CYNCGEEGHMAVNCRSA-----------------------VKRKKP--CFVCGSLEHGVR 217
C+ CG GH A C + V P C+ CG +
Sbjct: 6 CFKCGRSGHWARECPAGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGPPAK 65
Query: 218 QCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
+ C+ C +GGH AKDC + + + Q C CG GH C D E
Sbjct: 66 DWIRGGPCYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQ 116
Query: 278 QCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
+CY C FGH+ D +V C+RCG+ GH +
Sbjct: 117 KCYSCGEFGHI----QKDCT--KVKCYRCGETGHVAI 147
>gi|343417191|emb|CCD20113.1| nucleic acid binding protein, putative [Trypanosoma vivax Y486]
Length = 502
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 57/131 (43%), Gaps = 24/131 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C+ C ++GHM C + CF CG H + C+K + CF GH + +C K
Sbjct: 78 CFQCHQKGHMMPMCP-----QTRCFNCGHFGHSSQLCAKKRACFHFSMPGHTSTECTRK- 131
Query: 243 KSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVS 302
++C +C + GHDM C S +C++C GHL A EV
Sbjct: 132 ----DMGRLCYRCKEPGHDMAKCPQS--------PRCHMCNQTGHLV------AQCPEVL 173
Query: 303 CFRCGQLGHTG 313
C RC Q GH
Sbjct: 174 CNRCHQKGHMA 184
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 14/109 (12%)
Query: 206 CFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHK--SGFQNAQVCLKCGDSGHDMF 263
C C S H R C +C C + GH +DCP + K + +C CG S H
Sbjct: 9 CKNCLSTGHLRRDCPLI-ECAACSRLGHFKEDCPHRRKRPRADNDIGICRSCGSSSHAQA 67
Query: 264 SCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHT 312
C + +K V+C+ C GH+ + + CF CG GH+
Sbjct: 68 KCP-----ERIKSVECFQCHQKGHM------MPMCPQTRCFNCGHFGHS 105
>gi|2895760|gb|AAC32813.1| universal minicircle sequence binding protein [Crithidia
fasciculata]
gi|2895761|gb|AAC32814.1| universal minicircle sequence binding protein [Crithidia
fasciculata]
Length = 116
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 13/93 (13%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-------SKAQDCFI 227
P +TCYNCG+ GH++ C S ++ K C+ CGS EH R+C + ++ C+
Sbjct: 21 PKAAASRTCYNCGQTGHLSRECPSE-RKPKACYNCGSTEHLSRECPNEAKTGADSRTCYN 79
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C + GH ++DCP + K + C CG + H
Sbjct: 80 CGQSGHLSRDCPSERK-----PKACYNCGSTEH 107
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKDC 238
TCY CGE GHM+ C A + C+ CG H R+C K + C+ C H +++C
Sbjct: 6 TCYKCGEAGHMSRECPKAAASRT-CYNCGQTGHLSRECPSERKPKACYNCGSTEHLSREC 64
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
P++ K+G +++ C CG SGH C + K CY C HL
Sbjct: 65 PNEAKTG-ADSRTCYNCGQSGHLSRDC-----PSERKPKACYNCGSTEHL 108
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKR---KKPCFVCGSLEHGVRQCS---KAQDCFIC 228
P +R + CYNCG H++ C + K + C+ CG H R C K + C+ C
Sbjct: 43 PSERKPKACYNCGSTEHLSRECPNEAKTGADSRTCYNCGQSGHLSRDCPSERKPKACYNC 102
Query: 229 KKGGHRAKDCPDKH 242
H +++CPD+H
Sbjct: 103 GSTEHLSRECPDRH 116
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 220 SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQC 279
S A C+ C + GH +++CP S + C CG +GH C + K C
Sbjct: 2 SAAVTCYKCGEAGHMSRECPKAAAS-----RTCYNCGQTGHLSREC-----PSERKPKAC 51
Query: 280 YICRCFGHLC--CVNISDAVPGEVSCFRCGQLGH 311
Y C HL C N + +C+ CGQ GH
Sbjct: 52 YNCGSTEHLSRECPNEAKTGADSRTCYNCGQSGH 85
>gi|338729303|ref|XP_001505024.3| PREDICTED: cellular nucleic acid-binding protein-like [Equus
caballus]
Length = 170
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-----KAQDCFICKKGGHRAKD 237
CY CGE GH A +C + C+ CG H + C+ + Q C+ C + GH A+D
Sbjct: 47 CYRCGESGHHARDCHLL---ENICYNCGRSGHIAKDCTEPKREREQCCYTCGRRGHLARD 103
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C D+ Q Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 104 C-DR-----QEQQKCYSCGELGHFQ---------KDCTQVKCYRCGETGH---VAINCSK 145
Query: 298 PGEVSCFRCGQLGH 311
+V+C+RCG+ GH
Sbjct: 146 KNKVNCYRCGKPGH 159
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 16/110 (14%)
Query: 206 CFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFS 264
C+ CG H R C ++ C+ C + GH AKDC + + + Q C CG GH
Sbjct: 47 CYRCGESGHHARDCHLLENICYNCGRSGHIAKDCTEPKR---EREQCCYTCGRRGHLARD 103
Query: 265 CRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C D ++ +CY C GH D +V C+RCG+ GH +
Sbjct: 104 C------DRQEQQKCYSCGELGHF----QKDCT--QVKCYRCGETGHVAI 141
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
Q CY CG GH+A +C ++K C+ CG L H + C++ + C+ C + GH A +C
Sbjct: 89 QCCYTCGRRGHLARDCDRQEQQK--CYSCGELGHFQKDCTQVK-CYRCGETGHVAINCSK 145
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K+K C +CG GH C
Sbjct: 146 KNKVN------CYRCGKPGHLAREC 164
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ--DCFICKKGGHRAKDC 238
Q CY+CGE GH +C + VK C+ CG H CSK +C+ C K GH A++C
Sbjct: 110 QKCYSCGELGHFQKDC-TQVK----CYRCGETGHVAINCSKKNKVNCYRCGKPGHLAREC 164
Query: 239 P 239
P
Sbjct: 165 P 165
>gi|156065797|ref|XP_001598820.1| hypothetical protein SS1G_00909 [Sclerotinia sclerotiorum 1980]
gi|154691768|gb|EDN91506.1| hypothetical protein SS1G_00909 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 502
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-------AQDCFICKKGGHR 234
C+NCG+EGH C K +PCF C H +C+ + C IC++ GHR
Sbjct: 72 ACFNCGQEGHSKAECPEPPK-ARPCFNCSEEGHTKAECTNPAVPREFSGTCRICEQQGHR 130
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
A DCP ++C C + GH + C+N ++
Sbjct: 131 ASDCPSAP------PKLCNNCKEEGHSILECKNPRKIE 162
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 67/150 (44%), Gaps = 21/150 (14%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKK----PCFVCGSLEHGVRQCSKAQD----C 225
+P DRG C C E GH++ +C V + CF C + H VR C ++ C
Sbjct: 281 EPVDRGVPLCSRCSELGHISKHCTQEVGESERVQVQCFNCSEIGHRVRDCPIPREDKFAC 340
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQ--VCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
CKK GH +KDC +G ++A+ C KC + GH FS R+ + C C
Sbjct: 341 RNCKKSGHSSKDC-----TGPRSAEGVECKKCNEIGH--FS-RDCPTGGGGDGGVCRNCN 392
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGHTG 313
GH ++ V + C C GHTG
Sbjct: 393 QPGHHSKECTNERV---IICRNCDAEGHTG 419
>gi|433935|emb|CAA53777.1| UMS binding protein [Crithidia fasciculata]
Length = 116
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKDC 238
TCY CGE GHM+ C A + C+ CG H R+C K + C+ C H +++C
Sbjct: 6 TCYKCGEAGHMSRECPKAAASRT-CYNCGQTGHLSRECPSERKPKACYNCGSTEHLSREC 64
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
P++ K+G +++ C CG +GH C + K +CY C HL
Sbjct: 65 PNEAKTG-ADSRTCYNCGQTGHLSREC-----PSERKPKRCYNCGSTEHL 108
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 13/93 (13%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-------SKAQDCFI 227
P +TCYNCG+ GH++ C S ++ K C+ CGS EH R+C + ++ C+
Sbjct: 21 PKAAASRTCYNCGQTGHLSRECPSE-RKPKACYNCGSTEHLSRECPNEAKTGADSRTCYN 79
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C + GH +++CP + K + C CG + H
Sbjct: 80 CGQTGHLSRECPSERK-----PKRCYNCGSTEH 107
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKR---KKPCFVCGSLEHGVRQCS---KAQDCFIC 228
P +R + CYNCG H++ C + K + C+ CG H R+C K + C+ C
Sbjct: 43 PSERKPKACYNCGSTEHLSRECPNEAKTGADSRTCYNCGQTGHLSRECPSERKPKRCYNC 102
Query: 229 KKGGHRAKDCPDKH 242
H +++CPD+H
Sbjct: 103 GSTEHLSRECPDRH 116
Score = 40.8 bits (94), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 220 SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQC 279
S A C+ C + GH +++CP S + C CG +GH C + K C
Sbjct: 2 SAAVTCYKCGEAGHMSRECPKAAAS-----RTCYNCGQTGHLSREC-----PSERKPKAC 51
Query: 280 YICRCFGHLC--CVNISDAVPGEVSCFRCGQLGH 311
Y C HL C N + +C+ CGQ GH
Sbjct: 52 YNCGSTEHLSRECPNEAKTGADSRTCYNCGQTGH 85
>gi|110815940|sp|Q77373.3|POL_HV1AN RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1435
Score = 58.5 bits (140), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCF--ICKKG 231
+P +G C+NCG+EGH+A NCR+ RKK C+ CG H ++ C + F I G
Sbjct: 387 NPIRKGTIKCFNCGKEGHIARNCRAP--RKKGCWKCGQEGHQMKDCRNGKQFFRQILASG 444
Query: 232 GHRAK 236
GH A+
Sbjct: 445 GHEAR 449
Score = 43.9 bits (102), Expect = 0.087, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
CF C K GH A++C K G C KCG GH M CRN
Sbjct: 396 CFNCGKEGHIARNCRAPRKKG------CWKCGQEGHQMKDCRN 432
>gi|406863952|gb|EKD16998.1| zinc knuckle protein [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 545
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 14/97 (14%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-------DCFICKKGGHRA 235
C+NCG+EGHM +C K + CF CG H C C +C++ GHRA
Sbjct: 136 CFNCGQEGHMKSDCPQPPKSRG-CFNCGEEGHSKADCPNPAVAREFTGTCRVCEQQGHRA 194
Query: 236 KDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
DCP K + VC C + GH++ C +D
Sbjct: 195 ADCPSKPPT------VCKNCQEEGHEVVVCDKPRKID 225
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 57/135 (42%), Gaps = 17/135 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHRAKD 237
CYNC E GH +C + K C C H ++CS+ + +C C + GH +++
Sbjct: 380 CYNCEETGHRIRDCPNPRPDKFACRNCKQSGHSSKECSEPRSAEGVECKKCNEVGHFSRE 439
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
CP + G ++ C CG GH C N L C C GH C +
Sbjct: 440 CP---QGGGGGSRACHNCGQEGHSKNDCTNERVL------ICRNCDAQGHECSKPRDYS- 489
Query: 298 PGEVSCFRCGQLGHT 312
V C C Q+GHT
Sbjct: 490 --RVKCSNCDQMGHT 502
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 50/132 (37%), Gaps = 22/132 (16%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
Q C NC GH NC K EH V + C+ C++ GHR +DCP+
Sbjct: 351 QKCGNCDGLGHTQRNCPQDKVEK---------EHTVVK------CYNCEETGHRIRDCPN 395
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGE 300
F C C SGH C S + V+C C GH G
Sbjct: 396 PRPDKF----ACRNCKQSGHSSKECSEPRSAEG---VECKKCNEVGHFSRECPQGGGGGS 448
Query: 301 VSCFRCGQLGHT 312
+C CGQ GH+
Sbjct: 449 RACHNCGQEGHS 460
>gi|317137775|ref|XP_001727944.2| cellular nucleic acid-binding protein [Aspergillus oryzae RIB40]
Length = 171
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 179 GWQTCYNCGEEGHMAVNC-------RSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKG 231
G Q CY CG GH+A NC R+ C+ CG H R C+ Q C+ C +
Sbjct: 80 GGQECYKCGHVGHIARNCSQGGYSGDGYGGRQHTCYSCGGHGHMARDCTHGQKCYNCGEV 139
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
GH ++DCP + + +VC KC GH +C N
Sbjct: 140 GHVSRDCPSE----ARGERVCYKCKQPGHVQAACPN 171
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 63/145 (43%), Gaps = 32/145 (22%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
D P +G TCYNCG +GH++ C A K +KPC+ C + GH
Sbjct: 22 DCPKKGTPTCYNCGGQGHVSRECTVAPK-EKPCYRCSGV-------------------GH 61
Query: 234 RAKDCPDKHK----SGFQNAQVCLKCGDSGHDMFSCRN---SYSLDDLKEVQCYICRCFG 286
++DCP SG Q C KCG GH +C S ++ CY C G
Sbjct: 62 ISRDCPQAPSGDGYSGATGGQECYKCGHVGHIARNCSQGGYSGDGYGGRQHTCYSCGGHG 121
Query: 287 HLCCVNISDAVPGEVSCFRCGQLGH 311
H+ D G+ C+ CG++GH
Sbjct: 122 HM----ARDCTHGQ-KCYNCGEVGH 141
Score = 37.4 bits (85), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 40/104 (38%), Gaps = 28/104 (26%)
Query: 220 SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQC 279
++ + CF C H+A+DCP K C CG GH C + KE C
Sbjct: 5 TRGRGCFNCGDASHQARDCPKK------GTPTCYNCGGQGHVSRECTVA-----PKEKPC 53
Query: 280 YICRCFGHLCCVNISDAVP------------GEVSCFRCGQLGH 311
Y C GH IS P G C++CG +GH
Sbjct: 54 YRCSGVGH-----ISRDCPQAPSGDGYSGATGGQECYKCGHVGH 92
>gi|322710312|gb|EFZ01887.1| zinc knuckle domain protein [Metarhizium anisopliae ARSEF 23]
Length = 182
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 68/158 (43%), Gaps = 28/158 (17%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC----------SKAQ 223
D P +G CYNCG EGHM+ +C +K K C+ CG H R+C +++
Sbjct: 26 DCPSKGPAKCYNCGGEGHMSRDCSEPMKENKSCYKCGQPGHISRECPLGGAGGAGGAQST 85
Query: 224 DCFICKKGGHRAKDCP----------DKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDD 273
+C+ C + GH A++C G + C CG GH C N
Sbjct: 86 ECYKCGEIGHIARNCSKAGGSYGGSFGGGYGGGGAGKTCYSCGGYGHMSRECVNG----- 140
Query: 274 LKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
++CY C GH ++ GE C++C Q GH
Sbjct: 141 ---MKCYNCGESGHYSRDCPKESSGGEKICYKCQQAGH 175
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 17/99 (17%)
Query: 183 CYNCGEEGHMAVNCR--------------SAVKRKKPCFVCGSLEHGVRQCSKAQDCFIC 228
CY CGE GH+A NC K C+ CG H R+C C+ C
Sbjct: 87 CYKCGEIGHIARNCSKAGGSYGGSFGGGYGGGGAGKTCYSCGGYGHMSRECVNGMKCYNC 146
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
+ GH ++DCP + G ++C KC +GH +C N
Sbjct: 147 GESGHYSRDCPKESSGG---EKICYKCQQAGHVQSACPN 182
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 64/148 (43%), Gaps = 27/148 (18%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA----QDCFICKKGGHRAKD 237
CY+CG GH A +C S K C+ CG H R CS+ + C+ C + GH +++
Sbjct: 13 ACYSCGNPGHQARDCPSKGPAK--CYNCGGEGHMSRDCSEPMKENKSCYKCGQPGHISRE 70
Query: 238 CPDKHKSGFQNAQV--CLKCGDSGHDMFSCRNSYSLDDLKEVQ----------CYICRCF 285
CP G AQ C KCG+ GH +C + CY C +
Sbjct: 71 CPLGGAGGAGGAQSTECYKCGEIGHIARNCSKAGGSYGGSFGGGYGGGGAGKTCYSCGGY 130
Query: 286 GHLC--CVNISDAVPGEVSCFRCGQLGH 311
GH+ CVN + C+ CG+ GH
Sbjct: 131 GHMSRECVN-------GMKCYNCGESGH 151
>gi|403291696|ref|XP_003936912.1| PREDICTED: cellular nucleic acid-binding protein-like [Saimiri
boliviensis boliviensis]
Length = 169
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 65/135 (48%), Gaps = 27/135 (20%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA-----QDCFICKKGGHRAK 236
TCY CGE GH A NC C+ CG H + C++ Q C+ C + GH A
Sbjct: 46 TCYRCGESGHQAKNCVLG----NICYNCGRSGHIAKDCNEPKRERDQCCYTCGRPGHLAC 101
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDA 296
DC D+ K Q C CG GH D +V+CY C GH+ ++ S A
Sbjct: 102 DC-DRQKE-----QKCYACGQLGHIQ---------KDCAKVKCYRCGETGHM-AISCSKA 145
Query: 297 VPGEVSCFRCGQLGH 311
+ +V+C+RCG+ GH
Sbjct: 146 I--QVNCYRCGKPGH 158
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 11/81 (13%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
Q CY CG GH+A +C ++++ C+ CG L H + C+K + C+ C + GH A C
Sbjct: 88 QCCYTCGRPGHLACDCDR--QKEQKCYACGQLGHIQKDCAKVK-CYRCGETGHMAISCS- 143
Query: 241 KHKSGFQNAQV-CLKCGDSGH 260
+ QV C +CG GH
Sbjct: 144 ------KAIQVNCYRCGKPGH 158
>gi|426249735|ref|XP_004018605.1| PREDICTED: cellular nucleic acid-binding protein isoform 2 [Ovis
aries]
Length = 169
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 57/120 (47%), Gaps = 21/120 (17%)
Query: 175 PPDRGW---QTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFIC 228
PP + W CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C
Sbjct: 55 PPAKDWIRGGPCYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSC 114
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
+ GH KDC C +CG++GH +C + EV CY C GHL
Sbjct: 115 GEFGHIQKDC---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 159
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 60/150 (40%), Gaps = 33/150 (22%)
Query: 183 CYNCGEEGHMAVNCRSA----------------VKRKKP--CFVCGSLEHGVRQCSKAQD 224
C+ CG GH A C + V P C+ CG + +
Sbjct: 6 CFKCGRSGHWARECPAGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGPPAKDWIRGGP 65
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRC 284
C+ C +GGH AKDC + + + Q C CG GH C D E +CY C
Sbjct: 66 CYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCGE 116
Query: 285 FGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
FGH+ D +V C+RCG+ GH +
Sbjct: 117 FGHI----QKDCT--KVKCYRCGETGHVAI 140
>gi|335772494|gb|AEH58085.1| cellular nucleic acid-binding protein-like protein, partial [Equus
caballus]
Length = 166
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 43 CYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 99
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 100 CD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSK 141
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 142 TSEVNCYRCGESGH 155
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 63/151 (41%), Gaps = 34/151 (22%)
Query: 183 CYNCGEEGHMAVNCRSA----------------VKRKKP--CFVCGSLEHGVRQCSKAQD 224
C+ CG GH A C + V P C+ CG H + C +D
Sbjct: 2 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 61
Query: 225 -CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C +GGH AKDC + + + Q C CG GH C D E +CY C
Sbjct: 62 ACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCG 112
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
FGH+ D +V C+RCG+ GH +
Sbjct: 113 EFGHI----QKDCT--KVKCYRCGETGHVAI 137
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 62 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 121
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 122 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 156
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 78 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 134
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 135 VAINCS-------KTSEVNCYRCGESGH 155
Score = 37.4 bits (85), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 49/125 (39%), Gaps = 46/125 (36%)
Query: 224 DCFICKKGGHRAKDCPD---------KHKSGFQNAQ-----VCLKCGDSGHDMFSCRNSY 269
+CF C + GH A++CP GFQ +C +CG+SGH C
Sbjct: 1 ECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC---- 56
Query: 270 SLDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----------CFRC 306
DL+E CY C GH+ CC N PG ++ C+ C
Sbjct: 57 ---DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDHADEQKCYSC 111
Query: 307 GQLGH 311
G+ GH
Sbjct: 112 GEFGH 116
>gi|294463728|gb|ADE77389.1| unknown [Picea sitchensis]
Length = 301
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Query: 206 CFVCGSLEHGVRQCS------KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
CF+CG+ +H + C + + C +C++ GH K C + ++ + C CG++G
Sbjct: 75 CFICGARDHIAKGCPSKDRWDREKICLLCRERGHTMKHCYNNQQN--HETKYCYNCGETG 132
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
H + C +C++C+ GHL C N P SC CG L H
Sbjct: 133 HRLSECPEPIQNGGTAFAECFLCKERGHLSKNCPTNTHGIYPKGGSCKICGGLTH 187
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 9/186 (4%)
Query: 111 KRIRVRKKKKKEADKIEIEDQSVIVRKEEQKVETADNGDEGVTTVEISDNIVLRKLLRGP 170
KR R+ ++K E+ + K + +++D G V+ S + L + P
Sbjct: 4 KRQRLARQKYLESHGDSVPTLDRDAHKTKTDGDSSDESKNGGGDVKASKRPRPKSLRKHP 63
Query: 171 RYFDPPDRGWQTCYNCGEEGHMAVNCRSAVK--RKKPCFVCGSLEHGVRQCSKAQD---- 224
P + + C+ CG H+A C S + R+K C +C H ++ C Q
Sbjct: 64 LRV-PGSKPGEGCFICGARDHIAKGCPSKDRWDREKICLLCRERGHTMKHCYNNQQNHET 122
Query: 225 --CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYIC 282
C+ C + GHR +CP+ ++G C C + GH +C + K C IC
Sbjct: 123 KYCYNCGETGHRLSECPEPIQNGGTAFAECFLCKERGHLSKNCPTNTHGIYPKGGSCKIC 182
Query: 283 RCFGHL 288
HL
Sbjct: 183 GGLTHL 188
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 48/118 (40%), Gaps = 15/118 (12%)
Query: 197 RSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCG 256
R RK P V GS + CFIC H AK CP K + + ++CL C
Sbjct: 55 RPKSLRKHPLRVPGS--------KPGEGCFICGARDHIAKGCPSKDR--WDREKICLLCR 104
Query: 257 DSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+ GH M C N+ + K CY C GH C I + CF C + GH
Sbjct: 105 ERGHTMKHCYNNQQNHETK--YCYNCGETGHRLSECPEPIQNGGTAFAECFLCKERGH 160
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 15/83 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
CYNCGE GH C ++ F +CF+CK+ GH +K+CP
Sbjct: 125 CYNCGETGHRLSECPEPIQNGGTAFA---------------ECFLCKERGHLSKNCPTNT 169
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
+ C CG H C
Sbjct: 170 HGIYPKGGSCKICGGLTHLAKDC 192
>gi|341875989|gb|EGT31924.1| hypothetical protein CAEBREN_06592 [Caenorhabditis brenneri]
Length = 395
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRC 284
CF C++ GHR DCP ++ S + VC KCG H + C+ + C++C+
Sbjct: 235 CFHCREPGHRLADCPKRNSS--HSDGVCFKCGSMEHSIHECKKK-GVKGFPFATCFVCKQ 291
Query: 285 FGHL---CCVNISDAVPGEVSCFRCGQLGH 311
GH+ C N++ P +C CG +GH
Sbjct: 292 VGHISRDCHQNLNGVYPDGGACNVCGAVGH 321
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 182 TCYNCGEEGHMAVNC--RSAVKRKKPCFVCGSLEHGVRQCSKA-------QDCFICKKGG 232
C++C E GH +C R++ CF CGS+EH + +C K CF+CK+ G
Sbjct: 234 ACFHCREPGHRLADCPKRNSSHSDGVCFKCGSMEHSIHECKKKGVKGFPFATCFVCKQVG 293
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
H ++DC + + C CG GH
Sbjct: 294 HISRDCHQNLNGVYPDGGACNVCGAVGH 321
>gi|319921907|gb|ADV78572.1| universal minicircle sequence-binding protein 2 [Leishmania
donovani]
Length = 175
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 13/87 (14%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-------AQDCFICKKGGH 233
++CYNCGE GHM+ +C S ++ K C+ CGS +H R+C+ + C+ C GH
Sbjct: 86 RSCYNCGETGHMSRDCPSE-RKPKSCYNCGSTDHLSRECTNEAKAGADTRSCYNCGGTGH 144
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
++DCP++ K + C CG + H
Sbjct: 145 LSRDCPNERK-----PKSCYNCGSTDH 166
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 55/111 (49%), Gaps = 12/111 (10%)
Query: 182 TCYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKD 237
TCY CGE GHM+ +C R+A R C+ CG H R C K + C+ C H +++
Sbjct: 65 TCYKCGEAGHMSRSCPRAAATRS--CYNCGETGHMSRDCPSERKPKSCYNCGSTDHLSRE 122
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C ++ K+G + + C CG +GH C N + K CY C HL
Sbjct: 123 CTNEAKAG-ADTRSCYNCGGTGHLSRDCPN-----ERKPKSCYNCGSTDHL 167
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKR---KKPCFVCGSLEHGVRQCS---KAQDCFIC 228
P +R ++CYNCG H++ C + K + C+ CG H R C K + C+ C
Sbjct: 102 PSERKPKSCYNCGSTDHLSRECTNEAKAGADTRSCYNCGGTGHLSRDCPNERKPKSCYNC 161
Query: 229 KKGGHRAKDCPDKH 242
H +++CPD+H
Sbjct: 162 GSTDHLSRECPDRH 175
>gi|449266322|gb|EMC77386.1| Cellular nucleic acid-binding protein [Columba livia]
Length = 181
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 58 CYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 114
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 115 CDHA------DEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSK 156
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 157 TSEVNCYRCGESGH 170
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 77 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 136
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 137 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 171
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 16/110 (14%)
Query: 206 CFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFS 264
C+ CG H + C +D C+ C +GGH AKDC + + + Q C CG GH
Sbjct: 58 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARD 114
Query: 265 CRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C D E +CY C FGH+ D +V C+RCG+ GH +
Sbjct: 115 C------DHADEQKCYSCGEFGHI----QKDCT--KVKCYRCGETGHVAI 152
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 11/81 (13%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH A +C
Sbjct: 100 QCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGHVAINCS- 155
Query: 241 KHKSGFQNAQV-CLKCGDSGH 260
+ ++V C +CG+SGH
Sbjct: 156 ------KTSEVNCYRCGESGH 170
>gi|50475|emb|CAA77897.1| cellular nucleic acid binding protein clone 14 [Mus musculus]
Length = 171
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 25/134 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ + C+ CG H + C + Q C+ C K H A+D
Sbjct: 47 CYRCGESGHLAKDCD--LQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPDHLARD 104
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 105 CD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSK 146
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 147 TSEVNCYRCGESGH 160
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 55/111 (49%), Gaps = 18/111 (16%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKD 237
+ CYNCG GH+A +C+ + R++ C+ CG +H R C A Q C+ C + GH KD
Sbjct: 66 EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPDHLARDCDHADEQKCYSCGEFGHIQKD 125
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C C +CG++GH +C + EV CY C GHL
Sbjct: 126 C---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 161
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 62/152 (40%), Gaps = 35/152 (23%)
Query: 183 CYNCGEEGHMAVNCRSA----------------VKRKKP--CFVCGSLEHGVRQCSKAQD 224
C+ CG GH A C + V P C+ CG H + C +D
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 65
Query: 225 --CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYIC 282
C+ C +GGH AKDC + + + Q C CG H C D E +CY C
Sbjct: 66 EACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPDHLARDC------DHADEQKCYSC 116
Query: 283 RCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
FGH+ D +V C+RCG+ GH +
Sbjct: 117 GEFGHI----QKDCT--KVKCYRCGETGHVAI 142
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ H+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 83 EPKREREQCCYNCGKPDHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 139
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 140 VAINCS-------KTSEVNCYRCGESGH 160
>gi|393245308|gb|EJD52819.1| hypothetical protein AURDEDRAFT_181338 [Auricularia delicata
TFB-10046 SS5]
Length = 256
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 225 CFICKKGGHRAKDCPDKHKS--GFQNAQ----VCLKCGDSGHDMFSCRNSYSLDD-LKEV 277
CF C+ GH AKDCPD + + G + + +C +CG + H + CR + DD L
Sbjct: 82 CFACRGKGHAAKDCPDANSNLEGEEKPKPAMGICYRCGATNHSLKRCRRPENPDDPLPFA 141
Query: 278 QCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
C++C GHL C N P SC CG+ H
Sbjct: 142 TCFVCGRKGHLAGGCAKNARGVYPDGGSCVLCGKTTH 178
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 19/102 (18%)
Query: 183 CYNCGEEGHMAVNCRSA------VKRKKP----CFVCGSLEHGVRQCSKAQD-------- 224
C+ C +GH A +C A ++ KP C+ CG+ H +++C + ++
Sbjct: 82 CFACRGKGHAAKDCPDANSNLEGEEKPKPAMGICYRCGATNHSLKRCRRPENPDDPLPFA 141
Query: 225 -CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF+C + GH A C + + + C+ CG + H C
Sbjct: 142 TCFVCGRKGHLAGGCAKNARGVYPDGGSCVLCGKTTHLARDC 183
>gi|301788510|ref|XP_002929671.1| PREDICTED: cellular nucleic acid-binding protein-like [Ailuropoda
melanoleuca]
Length = 206
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 62/134 (46%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH A +C + C+ CG H + C Q C+ C + GH A+D
Sbjct: 83 CYRCGESGHHAKDCDFL---EALCYNCGRSGHIAKDCIERKRESEQCCYTCGRPGHLARD 139
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C D+ Q C CG+ GH D +V+CY C GH+ I+ +
Sbjct: 140 C-DR-----QEEPKCYSCGEYGHIQ---------KDCSQVKCYRCGETGHM---AINCSK 181
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 182 TSEVNCYRCGESGH 195
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 26/113 (23%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD--CFICKKGGHRAK 236
CYNCG GH+A +C ++RK+ C+ CG H R C + ++ C+ C + GH K
Sbjct: 103 CYNCGRSGHIAKDC---IERKRESEQCCYTCGRPGHLARDCDRQEEPKCYSCGEYGHIQK 159
Query: 237 DCPDKHKSGFQNAQV-CLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
DC +QV C +CG++GH +C + EV CY C GHL
Sbjct: 160 DC----------SQVKCYRCGETGHMAINCSKT------SEVNCYRCGESGHL 196
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 16/110 (14%)
Query: 206 CFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFS 264
C+ CG H + C + C+ C + GH AKDC ++ + ++ Q C CG GH
Sbjct: 83 CYRCGESGHHAKDCDFLEALCYNCGRSGHIAKDCIERKR---ESEQCCYTCGRPGHLARD 139
Query: 265 CRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C D +E +CY C +GH+ +V C+RCG+ GH +
Sbjct: 140 C------DRQEEPKCYSCGEYGHI------QKDCSQVKCYRCGETGHMAI 177
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 13/82 (15%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCP 239
Q CY CG GH+A +C ++++P C+ CG H + CS+ + C+ C + GH A +C
Sbjct: 125 QCCYTCGRPGHLARDCD---RQEEPKCYSCGEYGHIQKDCSQVK-CYRCGETGHMAINCS 180
Query: 240 DKHKSGFQNAQV-CLKCGDSGH 260
+ ++V C +CG+SGH
Sbjct: 181 -------KTSEVNCYRCGESGH 195
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--CFICKKGGHRAKDCP 239
CY+CGE GH+ +C S VK C+ CG H CSK + C+ C + GH A++CP
Sbjct: 148 CYSCGEYGHIQKDC-SQVK----CYRCGETGHMAINCSKTSEVNCYRCGESGHLARECP 201
>gi|310796854|gb|EFQ32315.1| zinc knuckle [Glomerella graminicola M1.001]
Length = 182
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 65/165 (39%), Gaps = 37/165 (22%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-----------AQD 224
P+RG CYNCG EGHM+ +C K K C+ CG H R C + + +
Sbjct: 18 PNRGAAKCYNCGNEGHMSRDCPEGPKDTKSCYRCGQAGHISRDCPQGGNVGGGGGPSSSE 77
Query: 225 CFICKKGGHRAKDCPDKHKSGFQ------------------NAQVCLKCGDSGHDMFSCR 266
C+ C + GH A++CP + + C CG GH C
Sbjct: 78 CYKCGEVGHVARNCPKSGGGYGGGQGGYGGGYGGGGGYGGASQKTCYSCGGYGHMSRDCT 137
Query: 267 NSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
N +CY C GH ++ GE C++C Q GH
Sbjct: 138 NG--------SKCYNCGENGHFSRDCPKESSGGEKICYKCQQPGH 174
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 25/107 (23%)
Query: 183 CYNCGEEGHMAVNCRSAV----------------------KRKKPCFVCGSLEHGVRQCS 220
CY CGE GH+A NC + +K C+ CG H R C+
Sbjct: 78 CYKCGEVGHVARNCPKSGGGYGGGQGGYGGGYGGGGGYGGASQKTCYSCGGYGHMSRDCT 137
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
C+ C + GH ++DCP + G ++C KC GH C N
Sbjct: 138 NGSKCYNCGENGHFSRDCPKESSGG---EKICYKCQQPGHVQSQCPN 181
>gi|189195318|ref|XP_001933997.1| cellular nucleic acid binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187979876|gb|EDU46502.1| cellular nucleic acid binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 189
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 73/175 (41%), Gaps = 50/175 (28%)
Query: 171 RYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK--------- 221
R + P +G TCYNCGE+GH++ C S + +K C+ CG H R+C+K
Sbjct: 24 RAAECPTKGTPTCYNCGEKGHVSRECTSP-QAEKTCYRCGGTGHISRECTKDGGAPMGGR 82
Query: 222 ---AQDCFICKKGGHRAKDCPDKHKSGFQNAQ------------------VCLKCGDSGH 260
+Q+C+ C + GH A++C G+ C CG GH
Sbjct: 83 GGGSQECYKCGQVGHIARNC--SQGGGYSAGSRGGYGGGAAGGYGGARQTTCYSCGGFGH 140
Query: 261 DMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVS----CFRCGQLGH 311
S D + +CY C GHL S P E S C+RC Q GH
Sbjct: 141 --------MSRDCTQGQKCYNCGEVGHL-----SRDCPQETSSERVCYRCKQPGH 182
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 24/107 (22%)
Query: 181 QTCYNCGEEGHMAVNCRSA--------------------VKRKKPCFVCGSLEHGVRQCS 220
Q CY CG+ GH+A NC R+ C+ CG H R C+
Sbjct: 87 QECYKCGQVGHIARNCSQGGGYSAGSRGGYGGGAAGGYGGARQTTCYSCGGFGHMSRDCT 146
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
+ Q C+ C + GH ++DCP + S +VC +C GH +C N
Sbjct: 147 QGQKCYNCGEVGHLSRDCPQETSS----ERVCYRCKQPGHVQSACTN 189
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 59/152 (38%), Gaps = 30/152 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ---DCFICKKGGHRAKDCP 239
CYNCG+ H A C K C+ CG H R+C+ Q C+ C GH +++C
Sbjct: 15 CYNCGDSSHRAAEC--PTKGTPTCYNCGEKGHVSRECTSPQAEKTCYRCGGTGHISRECT 72
Query: 240 ----DKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSL----------------DDLKEVQC 279
+Q C KCG GH +C ++ C
Sbjct: 73 KDGGAPMGGRGGGSQECYKCGQVGHIARNCSQGGGYSAGSRGGYGGGAAGGYGGARQTTC 132
Query: 280 YICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
Y C FGH+ D G+ C+ CG++GH
Sbjct: 133 YSCGGFGHM----SRDCTQGQ-KCYNCGEVGH 159
>gi|452985547|gb|EME85303.1| hypothetical protein MYCFIDRAFT_101930, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 184
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 69/169 (40%), Gaps = 43/169 (25%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA------------- 222
P++G TCYNCG +GH++ +C K K C+ CG H R+C
Sbjct: 19 PNKGNPTCYNCGGQGHLSRDCTEPAK-DKSCYACGETGHMSRECPNGGGGGARSGGFGGG 77
Query: 223 ----QDCFICKKGGHRAKDCPD----------------KHKSGFQNAQVCLKCGDSGHDM 262
Q+C+ C K GH A++C G + Q C CG GH
Sbjct: 78 AGSDQECYKCGKVGHIARNCTQGGYGGGNFGGGRGGFGGGYGGGNSQQSCYTCGGYGH-- 135
Query: 263 FSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
S D ++ +CY C GHL + S E +C+RC Q GH
Sbjct: 136 ------LSRDCVQGQKCYNCGELGHL-SRDCSSEASSERTCYRCKQPGH 177
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 67/161 (41%), Gaps = 35/161 (21%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS---KAQDCFICKKGGHRA 235
G + CYNCG+ H A C + K C+ CG H R C+ K + C+ C + GH +
Sbjct: 1 GGRACYNCGDTTHQARECPN--KGNPTCYNCGGQGHLSRDCTEPAKDKSCYACGETGHMS 58
Query: 236 KDCPDKHKSGFQNA---------QVCLKCGDSGHDMFSCRN----------------SYS 270
++CP+ G ++ Q C KCG GH +C
Sbjct: 59 RECPNGGGGGARSGGFGGGAGSDQECYKCGKVGHIARNCTQGGYGGGNFGGGRGGFGGGY 118
Query: 271 LDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
+ CY C +GHL D V G+ C+ CG+LGH
Sbjct: 119 GGGNSQQSCYTCGGYGHL----SRDCVQGQ-KCYNCGELGH 154
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 24/107 (22%)
Query: 181 QTCYNCGEEGHMAVNC--------------------RSAVKRKKPCFVCGSLEHGVRQCS 220
Q CY CG+ GH+A NC ++ C+ CG H R C
Sbjct: 82 QECYKCGKVGHIARNCTQGGYGGGNFGGGRGGFGGGYGGGNSQQSCYTCGGYGHLSRDCV 141
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
+ Q C+ C + GH ++DC + S + C +C GH SC N
Sbjct: 142 QGQKCYNCGELGHLSRDCSSEASS----ERTCYRCKQPGHVQASCPN 184
>gi|401420034|ref|XP_003874506.1| universal minicircle sequence binding protein,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322490742|emb|CBZ26006.1| universal minicircle sequence binding protein,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 115
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 13/93 (13%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-------AQDCFI 227
P ++CYNCGE GH++ +C S ++ K C+ CGS EH R+C+ + C+
Sbjct: 20 PRAAATRSCYNCGETGHLSRDCPSE-RKPKSCYNCGSTEHLSRECTNEAKAGADTRSCYN 78
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C GH ++DCP++ K + C CG + H
Sbjct: 79 CGGTGHMSRDCPNERK-----PKSCYNCGSTEH 106
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 55/111 (49%), Gaps = 12/111 (10%)
Query: 182 TCYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKD 237
TCY CGE GHM+ +C R+A R C+ CG H R C K + C+ C H +++
Sbjct: 5 TCYKCGEAGHMSRSCPRAAATRS--CYNCGETGHLSRDCPSERKPKSCYNCGSTEHLSRE 62
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C ++ K+G + + C CG +GH C N + K CY C HL
Sbjct: 63 CTNEAKAG-ADTRSCYNCGGTGHMSRDCPN-----ERKPKSCYNCGSTEHL 107
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKR---KKPCFVCGSLEHGVRQCS---KAQDCFIC 228
P +R ++CYNCG H++ C + K + C+ CG H R C K + C+ C
Sbjct: 42 PSERKPKSCYNCGSTEHLSRECTNEAKAGADTRSCYNCGGTGHMSRDCPNERKPKSCYNC 101
Query: 229 KKGGHRAKDCPDKH 242
H +++CPD+H
Sbjct: 102 GSTEHLSRECPDRH 115
>gi|212538011|ref|XP_002149161.1| zinc knuckle domain protein (Byr3), putative [Talaromyces marneffei
ATCC 18224]
gi|210068903|gb|EEA22994.1| zinc knuckle domain protein (Byr3), putative [Talaromyces marneffei
ATCC 18224]
Length = 183
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 31/156 (19%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCSKA---QDCFICKKGGHR 234
G + C+NCGE H A +C K+ P C+ CG H R+C++A + C+ C + GH
Sbjct: 6 GSRGCFNCGEPSHQARDC---PKKGTPTCYNCGGQGHVSRECTQAPKEKSCYRCGQTGHI 62
Query: 235 AKDCPDKHKSGFQN-------------AQVCLKCGDSGHDMFSCRN------SYSLDDLK 275
++DC +G N Q C KCG GH +C + +
Sbjct: 63 SRDCQQSAPAGGNNGGFSRGGFSGGAGGQECYKCGQVGHIARNCSQGGSYGGGHGGFGGR 122
Query: 276 EVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
+ CY C +GH+ D G+ C+ CG++GH
Sbjct: 123 QQTCYSCGGYGHM----ARDCTQGQ-KCYNCGEVGH 153
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 70/165 (42%), Gaps = 37/165 (22%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA----------- 222
D P +G TCYNCG +GH++ C A K +K C+ CG H R C ++
Sbjct: 22 DCPKKGTPTCYNCGGQGHVSRECTQAPK-EKSCYRCGQTGHISRDCQQSAPAGGNNGGFS 80
Query: 223 ----------QDCFICKKGGHRAKDCPDKHKSGFQNA------QVCLKCGDSGHDMFSCR 266
Q+C+ C + GH A++C G + Q C CG GH
Sbjct: 81 RGGFSGGAGGQECYKCGQVGHIARNCSQGGSYGGGHGGFGGRQQTCYSCGGYGH------ 134
Query: 267 NSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
+ D + +CY C GH+ + + GE C++C Q GH
Sbjct: 135 --MARDCTQGQKCYNCGEVGHV-SRDCTTEANGERVCYKCKQPGH 176
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 14/97 (14%)
Query: 181 QTCYNCGEEGHMAVNC----------RSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKK 230
Q CY CG+ GH+A NC R++ C+ CG H R C++ Q C+ C +
Sbjct: 91 QECYKCGQVGHIARNCSQGGSYGGGHGGFGGRQQTCYSCGGYGHMARDCTQGQKCYNCGE 150
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
GH ++DC + +VC KC GH +C N
Sbjct: 151 VGHVSRDCTTE----ANGERVCYKCKQPGHVQSACPN 183
>gi|444314443|ref|XP_004177879.1| hypothetical protein TBLA_0A05670 [Tetrapisispora blattae CBS 6284]
gi|387510918|emb|CCH58360.1| hypothetical protein TBLA_0A05670 [Tetrapisispora blattae CBS 6284]
Length = 173
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 19/99 (19%)
Query: 181 QTCYNCGEEGHMAVNCRS-----------------AVKRKKPCFVCGSLEHGVRQCSKAQ 223
Q CY+CGE GHM+ +C S A + C+ CG H R C +++
Sbjct: 66 QRCYSCGETGHMSRDCPSGNSNGRRGGRFHNNRGGAGGSRVSCYKCGGPNHMARDCLQSE 125
Query: 224 D-CFICKKGGHRAKDCPDKHKS-GFQNAQVCLKCGDSGH 260
C+ C K GH A+DCP S G N +VC CG+SGH
Sbjct: 126 SKCYSCGKFGHLARDCPASGMSGGASNDRVCYACGESGH 164
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 70/168 (41%), Gaps = 45/168 (26%)
Query: 181 QTCYNCGEEGHMAVNCRS-----------------AVKRK---KPCFVCGSLEHGVRQCS 220
+ CY CG+ GH+A +C S ++R K C+ CG H +C+
Sbjct: 5 KACYVCGKIGHLADDCESEKLCYNCNQPGHLQSECTMERTAEFKQCYACGETGHVRSECT 64
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSG-----FQNAQ--------VCLKCGDSGHDMFSCRN 267
AQ C+ C + GH ++DCP + +G F N + C KCG H C
Sbjct: 65 -AQRCYSCGETGHMSRDCPSGNSNGRRGGRFHNNRGGAGGSRVSCYKCGGPNHMARDCLQ 123
Query: 268 SYSLDDLKEVQCYICRCFGHLC----CVNISDAVPGEVSCFRCGQLGH 311
S E +CY C FGHL +S + C+ CG+ GH
Sbjct: 124 S-------ESKCYSCGKFGHLARDCPASGMSGGASNDRVCYACGESGH 164
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 19/88 (21%)
Query: 168 RGPRYFDPPDRGWQ-----TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC--- 219
RG R+ + +RG +CY CG HMA +C ++ + C+ CG H R C
Sbjct: 90 RGGRFHN--NRGGAGGSRVSCYKCGGPNHMARDC---LQSESKCYSCGKFGHLARDCPAS 144
Query: 220 ------SKAQDCFICKKGGHRAKDCPDK 241
S + C+ C + GH ++DCP K
Sbjct: 145 GMSGGASNDRVCYACGESGHISRDCPSK 172
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 52/140 (37%), Gaps = 32/140 (22%)
Query: 200 VKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQ------------ 247
+ +K C+VCG + H C + C+ C + GH +C + + F+
Sbjct: 1 MNSQKACYVCGKIGHLADDCESEKLCYNCNQPGHLQSECTMERTAEFKQCYACGETGHVR 60
Query: 248 ---NAQVCLKCGDSGHDMFSC-------------RNSYSLDDLKEVQCYICRCFGHLCCV 291
AQ C CG++GH C N+ V CY C H+
Sbjct: 61 SECTAQRCYSCGETGHMSRDCPSGNSNGRRGGRFHNNRGGAGGSRVSCYKCGGPNHM--- 117
Query: 292 NISDAVPGEVSCFRCGQLGH 311
D + E C+ CG+ GH
Sbjct: 118 -ARDCLQSESKCYSCGKFGH 136
>gi|291225537|ref|XP_002732758.1| PREDICTED: zinc finger, CCHC domain containing 9-like [Saccoglossus
kowalevskii]
Length = 245
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 14/108 (12%)
Query: 178 RGWQTCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD--------- 224
R + C++C + GH +C +K CF CGS EH QC+ D
Sbjct: 90 RNKKVCFHCRQPGHGVADCPVILKANDQGMGICFKCGSTEHTSHQCTARVDKKRGEYPFA 149
Query: 225 -CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSL 271
CF+C K GH ++ CPD K + C CG H + C ++ SL
Sbjct: 150 RCFVCHKIGHLSRQCPDNPKGLYPYGGGCTICGSVKHFVKDCPDNISL 197
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC--RNSYSLDDLKEVQCYIC 282
CF C++ GH DCP K+ Q +C KCG + H C R + +C++C
Sbjct: 95 CFHCRQPGHGVADCPVILKANDQGMGICFKCGSTEHTSHQCTARVDKKRGEYPFARCFVC 154
Query: 283 RCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
GHL C N P C CG + H
Sbjct: 155 HKIGHLSRQCPDNPKGLYPYGGGCTICGSVKH 186
>gi|198401785|gb|ACH87542.1| Air1 domain containing protein [Platynereis dumerilii]
Length = 489
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 73/171 (42%), Gaps = 29/171 (16%)
Query: 111 KRIRVRK--KKKKEADKIEIEDQSVIVRKEEQKVETADNGDEGVTTVEISDNIVLRKLLR 168
KRI++ K K KKE + I V +N G+++ E+
Sbjct: 290 KRIQLVKPFKSKKEPESSPIPSP---VGSPHSAPTPFENLGSGISSSEVPK--------- 337
Query: 169 GPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD---- 224
PR + P +TC+ CG GH+A +C + +R CF C + H QCS +
Sbjct: 338 -PRPWKP-----RTCFECGGAGHLAPHCPTRHQRSIHCFECEGVGHPAPQCSSRRHVSII 391
Query: 225 CFICKKGGHRAKDC-----PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYS 270
C C+ GH AK+C P H S +N +C + GH +C +S S
Sbjct: 392 CHQCRGRGHIAKNCAFSCGPASHFSPRRNITRGYECWNYGHIARNCIDSTS 442
>gi|146104178|ref|XP_001469751.1| universal minicircle sequence binding protein [Leishmania infantum
JPCM5]
gi|134074121|emb|CAM72863.1| universal minicircle sequence binding protein [Leishmania infantum
JPCM5]
Length = 115
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 13/87 (14%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-------AQDCFICKKGGH 233
++CYNCGE GHM+ +C S ++ K C+ CGS +H R+C+ + C+ C GH
Sbjct: 26 RSCYNCGETGHMSRDCPSE-RKPKSCYNCGSTDHLSRECTNEAKAGADTRSCYNCGGTGH 84
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
++DCP++ K + C CG + H
Sbjct: 85 MSRDCPNERK-----PKSCYNCGSTDH 106
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 12/111 (10%)
Query: 182 TCYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKD 237
TCY CGE GHM+ +C R+AV R C+ CG H R C K + C+ C H +++
Sbjct: 5 TCYKCGEAGHMSRSCPRAAVTRS--CYNCGETGHMSRDCPSERKPKSCYNCGSTDHLSRE 62
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C ++ K+G + + C CG +GH C N + K CY C HL
Sbjct: 63 CTNEAKAG-ADTRSCYNCGGTGHMSRDCPN-----ERKPKSCYNCGSTDHL 107
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKR---KKPCFVCGSLEHGVRQCS---KAQDCFIC 228
P +R ++CYNCG H++ C + K + C+ CG H R C K + C+ C
Sbjct: 42 PSERKPKSCYNCGSTDHLSRECTNEAKAGADTRSCYNCGGTGHMSRDCPNERKPKSCYNC 101
Query: 229 KKGGHRAKDCPDKH 242
H +++CPD+H
Sbjct: 102 GSTDHLSRECPDRH 115
>gi|242018245|ref|XP_002429589.1| zinc finger protein cchc domain containing protein, putative
[Pediculus humanus corporis]
gi|212514556|gb|EEB16851.1| zinc finger protein cchc domain containing protein, putative
[Pediculus humanus corporis]
Length = 380
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCS-------KAQDCFICKKG 231
C++C GH+ C S + + C+ CGS EH +C + +CFICK+
Sbjct: 228 CFHCRGSGHVLSQCPSLTETENTGTGICYKCGSTEHSAIECKVVKGSSFQFAECFICKEQ 287
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
GH A+ CPD + + + C +CGD H
Sbjct: 288 GHIARQCPDNPRGLYPHGGACRECGDVTH 316
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRC 284
CF C+ GH CP ++ +C KCG + H C+ + +C+IC+
Sbjct: 228 CFHCRGSGHVLSQCPSLTETENTGTGICYKCGSTEHSAIECK-VVKGSSFQFAECFICKE 286
Query: 285 FGHL---CCVNISDAVPGEVSCFRCGQLGH 311
GH+ C N P +C CG + H
Sbjct: 287 QGHIARQCPDNPRGLYPHGGACRECGDVTH 316
>gi|157876786|ref|XP_001686735.1| universal minicircle sequence binding protein [Leishmania major
strain Friedlin]
gi|68129810|emb|CAJ09116.1| universal minicircle sequence binding protein [Leishmania major
strain Friedlin]
Length = 175
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 13/87 (14%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-------AQDCFICKKGGH 233
++CYNCGE GHM+ +C S ++ K C+ CGS +H R+C+ + C+ C GH
Sbjct: 86 RSCYNCGETGHMSRDCPSE-RKPKSCYNCGSTDHLSRECTNEAKAGADTRSCYNCGGTGH 144
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
++DCP++ K + C CG + H
Sbjct: 145 LSRDCPNERK-----PKSCYNCGSTDH 166
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 55/111 (49%), Gaps = 12/111 (10%)
Query: 182 TCYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKD 237
TCY CGE GHM+ +C R+A R C+ CG H R C K + C+ C H +++
Sbjct: 65 TCYKCGEAGHMSRSCPRAAATRS--CYNCGETGHMSRDCPSERKPKSCYNCGSTDHLSRE 122
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C ++ K+G + + C CG +GH C N + K CY C HL
Sbjct: 123 CTNEAKAG-ADTRSCYNCGGTGHLSRDCPN-----ERKPKSCYNCGSTDHL 167
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKR---KKPCFVCGSLEHGVRQCS---KAQDCFIC 228
P +R ++CYNCG H++ C + K + C+ CG H R C K + C+ C
Sbjct: 102 PSERKPKSCYNCGSTDHLSRECTNEAKAGADTRSCYNCGGTGHLSRDCPNERKPKSCYNC 161
Query: 229 KKGGHRAKDCPDKH 242
H +++CPD+H
Sbjct: 162 GSTDHLSRECPDRH 175
>gi|358369000|dbj|GAA85616.1| zinc knuckle domain protein [Aspergillus kawachii IFO 4308]
Length = 144
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK-------RKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
Q CY CG GH+A NC + R++ C+ CG H R C+ Q C+ C + GH
Sbjct: 55 QECYKCGRVGHIARNCPQSGGYGGGFGGRQQTCYSCGGFGHMARDCTNGQKCYNCGEVGH 114
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
++DCP + K +VC C GH +C N
Sbjct: 115 VSRDCPTEAK----GERVCYNCKQPGHVQAACPN 144
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 56/145 (38%), Gaps = 35/145 (24%)
Query: 190 GHMAVNCR--SAVKRKKPCFVCGSLEHGVRQCSKA-------------QDCFICKKGGHR 234
G NCR + ++K C+ CG + H R+C + Q+C+ C + GH
Sbjct: 7 GRGCFNCRECTVAPKEKSCYRCGGVGHISRECQASPAEGFGGAAAGGGQECYKCGRVGHI 66
Query: 235 AKDCPDKHKSGFQNA---QVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCV 291
A++CP G Q C CG GH C N + EV GH
Sbjct: 67 ARNCPQSGGYGGGFGGRQQTCYSCGGFGHMARDCTNGQKCYNCGEV--------GH---- 114
Query: 292 NISDAVP----GEVSCFRCGQLGHT 312
+S P GE C+ C Q GH
Sbjct: 115 -VSRDCPTEAKGERVCYNCKQPGHV 138
>gi|326483283|gb|EGE07293.1| zinc knuckle domain-containing protein [Trichophyton equinum CBS
127.97]
Length = 210
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 26/109 (23%)
Query: 181 QTCYNCGEEGHMAVNC----------------------RSAVKRKKPCFVCGSLEHGVRQ 218
Q CY CG+ GH+A NC R + C+ CG H R
Sbjct: 106 QECYKCGQVGHIARNCSQQGGSGYGGGYGNSGSGSYGSGGYGGRSQTCYSCGGYGHMARD 165
Query: 219 CSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
C++ Q C+ C + GH ++DCP + K +VC KC +GH +C N
Sbjct: 166 CTQGQKCYNCGEVGHVSRDCPTEAK----GERVCYKCKQAGHVQAACPN 210
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 69/180 (38%), Gaps = 53/180 (29%)
Query: 171 RYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA-------- 222
R D P +G TCYNCG +GH++ C K K C+ CG H R+C +
Sbjct: 38 RARDCPKKGTPTCYNCGGQGHVSRECTQPPKEKS-CYRCGMTGHISRECPSSGSGDNNYS 96
Query: 223 ---------QDCFICKKGGHRAKDCPDK------------------HKSGFQNAQVCLKC 255
Q+C+ C + GH A++C + +Q C C
Sbjct: 97 GGYSGGSGGQECYKCGQVGHIARNCSQQGGSGYGGGYGNSGSGSYGSGGYGGRSQTCYSC 156
Query: 256 GDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVP----GEVSCFRCGQLGH 311
G GH + D + +CY C GH +S P GE C++C Q GH
Sbjct: 157 GGYGH--------MARDCTQGQKCYNCGEVGH-----VSRDCPTEAKGERVCYKCKQAGH 203
>gi|146104175|ref|XP_001469750.1| putative universal minicircle sequence binding protein [Leishmania
infantum JPCM5]
gi|398024244|ref|XP_003865283.1| universal minicircle sequence binding protein, putative [Leishmania
donovani]
gi|134074120|emb|CAM72862.1| putative universal minicircle sequence binding protein [Leishmania
infantum JPCM5]
gi|322503520|emb|CBZ38606.1| universal minicircle sequence binding protein, putative [Leishmania
donovani]
Length = 115
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 13/93 (13%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-------AQDCFI 227
P ++CYNCGE GHM+ +C S ++ K C+ CGS +H R+C+ + C+
Sbjct: 20 PRAAATRSCYNCGETGHMSRDCPSE-RKPKSCYNCGSTDHLSRECTNEAKAGADTRSCYN 78
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C GH ++DCP++ K + C CG + H
Sbjct: 79 CGGTGHLSRDCPNERK-----PKSCYNCGSTDH 106
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 55/111 (49%), Gaps = 12/111 (10%)
Query: 182 TCYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKD 237
TCY CGE GHM+ +C R+A R C+ CG H R C K + C+ C H +++
Sbjct: 5 TCYKCGEAGHMSRSCPRAAATRS--CYNCGETGHMSRDCPSERKPKSCYNCGSTDHLSRE 62
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C ++ K+G + + C CG +GH C N + K CY C HL
Sbjct: 63 CTNEAKAG-ADTRSCYNCGGTGHLSRDCPN-----ERKPKSCYNCGSTDHL 107
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKR---KKPCFVCGSLEHGVRQCS---KAQDCFIC 228
P +R ++CYNCG H++ C + K + C+ CG H R C K + C+ C
Sbjct: 42 PSERKPKSCYNCGSTDHLSRECTNEAKAGADTRSCYNCGGTGHLSRDCPNERKPKSCYNC 101
Query: 229 KKGGHRAKDCPDKH 242
H +++CPD+H
Sbjct: 102 GSTDHLSRECPDRH 115
>gi|157876783|ref|XP_001686734.1| putative universal minicircle sequence binding protein [Leishmania
major strain Friedlin]
gi|68129809|emb|CAJ09115.1| putative universal minicircle sequence binding protein [Leishmania
major strain Friedlin]
Length = 115
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 13/93 (13%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-------AQDCFI 227
P ++CYNCGE GHM+ +C S ++ K C+ CGS +H R+C+ + C+
Sbjct: 20 PRAAATRSCYNCGETGHMSRDCPSE-RKPKSCYNCGSTDHLSRECTNEAKAGADTRSCYN 78
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C GH ++DCP++ K + C CG + H
Sbjct: 79 CGGTGHLSRDCPNERK-----PKSCYNCGSTDH 106
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 55/111 (49%), Gaps = 12/111 (10%)
Query: 182 TCYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKD 237
TCY CGE GHM+ +C R+A R C+ CG H R C K + C+ C H +++
Sbjct: 5 TCYKCGEAGHMSRSCPRAAATRS--CYNCGETGHMSRDCPSERKPKSCYNCGSTDHLSRE 62
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C ++ K+G + + C CG +GH C N + K CY C HL
Sbjct: 63 CTNEAKAG-ADTRSCYNCGGTGHLSRDCPN-----ERKPKSCYNCGSTDHL 107
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKR---KKPCFVCGSLEHGVRQCS---KAQDCFIC 228
P +R ++CYNCG H++ C + K + C+ CG H R C K + C+ C
Sbjct: 42 PSERKPKSCYNCGSTDHLSRECTNEAKAGADTRSCYNCGGTGHLSRDCPNERKPKSCYNC 101
Query: 229 KKGGHRAKDCPDKH 242
H +++CPD+H
Sbjct: 102 GSTDHLSRECPDRH 115
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 12/92 (13%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYI 281
A C+ C + GH ++ CP + + C CG++GH C + K CY
Sbjct: 3 AVTCYKCGEAGHMSRSCPRAAAT-----RSCYNCGETGHMSRDC-----PSERKPKSCYN 52
Query: 282 CRCFGHLC--CVNISDAVPGEVSCFRCGQLGH 311
C HL C N + A SC+ CG GH
Sbjct: 53 CGSTDHLSRECTNEAKAGADTRSCYNCGGTGH 84
>gi|48374972|gb|AAT42170.1| putative actin depolymerizing factor [Sorghum bicolor]
Length = 463
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 22/126 (17%)
Query: 206 CFVCGSLEHGVRQCS------KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
CF+C S +H + C K + C +C++ GH K+CPDK + + + C CG+SG
Sbjct: 70 CFICKSTDHVAKACPEKALWDKNKICLLCRERGHSLKNCPDKSEGNLK--KFCYNCGESG 127
Query: 260 HDMFSCRNSY-------SLDDLKE----VQCYICRCFGHL---CCVNISDAVPGEVSCFR 305
H + C S+ D+ C+IC+ GHL C N P C
Sbjct: 128 HSLSKCPKPIENGNPRASIVDISGGTNFASCFICKQQGHLSKNCPENKHGIYPKGGCCKE 187
Query: 306 CGQLGH 311
CG++ H
Sbjct: 188 CGEVTH 193
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
CYNCGE GH C ++ P + G S CFICK+ GH +K+CP+
Sbjct: 120 CYNCGESGHSLSKCPKPIENGNPRASIVDISGGTNFAS----CFICKQQGHLSKNCPENK 175
Query: 243 KSGFQNAQVCLKCGDSGHDMFSCRN 267
+ C +CG+ H C N
Sbjct: 176 HGIYPKGGCCKECGEVTHLARHCPN 200
>gi|115385941|ref|XP_001209517.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114187964|gb|EAU29664.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 184
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 181 QTCYNCGEEGHMAVNC-----------RSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
Q CY CG GH+A NC R++ C+ CG H R C+ Q C+ C
Sbjct: 91 QECYKCGRVGHIARNCPQGGSYGGGFGGGYGGRQQTCYSCGGFGHMARDCTHGQKCYNCG 150
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
+ GH ++DCP + K +VC C GH +C N
Sbjct: 151 EVGHVSRDCPTEAK----GERVCYNCKQPGHVQAACPN 184
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 57/147 (38%), Gaps = 38/147 (25%)
Query: 191 HMAVNCR--SAVKRKKPCFVCGSLEHGVRQCSKA------------QDCFICKKGGHRAK 236
H CR + ++K C+ CG+ H R+C +A Q+C+ C + GH A+
Sbjct: 45 HRPGTCRECTVAPKEKSCYRCGTTGHISRECPQAAGEGYGGGAPGGQECYKCGRVGHIAR 104
Query: 237 DCPDKHKSGFQNA-------QVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC 289
+CP G Q C CG GH C + +CY C GH
Sbjct: 105 NCPQGGSYGGGFGGGYGGRQQTCYSCGGFGHMARDCTHG--------QKCYNCGEVGH-- 154
Query: 290 CVNISDAVP----GEVSCFRCGQLGHT 312
+S P GE C+ C Q GH
Sbjct: 155 ---VSRDCPTEAKGERVCYNCKQPGHV 178
Score = 37.7 bits (86), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 30/157 (19%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV---------RQCS---KAQDCF 226
G + C+NCGE H + R K P F G + + R+C+ K + C+
Sbjct: 6 GGRGCFNCGEATHQ-LQLRWYAKPISP-FKLGPDPNLILPDHRPGTCRECTVAPKEKSCY 63
Query: 227 ICKKGGHRAKDCPD----KHKSGFQNAQVCLKCGDSGHDMFSCRN-------SYSLDDLK 275
C GH +++CP + G Q C KCG GH +C +
Sbjct: 64 RCGTTGHISRECPQAAGEGYGGGAPGGQECYKCGRVGHIARNCPQGGSYGGGFGGGYGGR 123
Query: 276 EVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHT 312
+ CY C FGH+ D G+ C+ CG++GH
Sbjct: 124 QQTCYSCGGFGHM----ARDCTHGQ-KCYNCGEVGHV 155
>gi|410899915|ref|XP_003963442.1| PREDICTED: cellular nucleic acid-binding protein-like [Takifugu
rubripes]
Length = 167
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 28/149 (18%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVK------------RKKPCFVCGSLEHGVRQCSKAQD-C 225
G C+ CG GH +C + +++ C+ CG H R C + +D C
Sbjct: 5 GNNECFGCGRTGHWIKDCPKSSGPRGRGPRGRGRVKEQFCYRCGEHGHIARDCDQPEDSC 64
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCF 285
+ C K GH ++DC + + + +C CG +GH C ++ E +CY C F
Sbjct: 65 YNCHKSGHISRDCKEPKR---EREHLCYNCGKAGHVARDCEHA------NEQKCYSCGEF 115
Query: 286 GHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
GH+ + +V C+RCG++GH +
Sbjct: 116 GHI------QKLCDKVKCYRCGEIGHVAV 138
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 61/137 (44%), Gaps = 26/137 (18%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGHRA 235
Q CY CGE GH+A +C + + C+ C H R C + + C+ C K GH A
Sbjct: 42 QFCYRCGEHGHIARDCD---QPEDSCYNCHKSGHISRDCKEPKREREHLCYNCGKAGHVA 98
Query: 236 KDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISD 295
+DC N Q C CG+ GH C +V+CY C GH V +
Sbjct: 99 RDCE------HANEQKCYSCGEFGHIQKLC---------DKVKCYRCGEIGH---VAVQC 140
Query: 296 AVPGEVSCFRCGQLGHT 312
+ E +C+ CG+ GH
Sbjct: 141 SKASETNCYNCGKAGHV 157
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 18/83 (21%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKR----------------KKPCFVCGSLEHGVR 217
+P CYNCG+ GH+A +C A ++ K C+ CG + H
Sbjct: 79 EPKREREHLCYNCGKAGHVARDCEHANEQKCYSCGEFGHIQKLCDKVKCYRCGEIGHVAV 138
Query: 218 QCSKAQD--CFICKKGGHRAKDC 238
QCSKA + C+ C K GH A+DC
Sbjct: 139 QCSKASETNCYNCGKAGHVARDC 161
>gi|345562029|gb|EGX45101.1| hypothetical protein AOL_s00173g202 [Arthrobotrys oligospora ATCC
24927]
Length = 549
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 69/165 (41%), Gaps = 34/165 (20%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVK-RKKP--CFVCGSLEHGVRQCSKAQD-----C 225
DP D C NC +EGH A +C K R+ P C CG H ++C K +D C
Sbjct: 316 DPSDIPSIKCVNCDQEGHRARDCPEERKQRRNPNACRNCGEEGHEAKECEKPRDASNVQC 375
Query: 226 FICKKGGHRAKDCPDKHKSGFQN----------------AQVCLKCGDSGHDMFSCRNSY 269
C+K GH +KDCPD K +N C CG+ GH C N
Sbjct: 376 RKCEKMGHFSKDCPDAPKMTCRNCDQEGHRAAECPEPKKGMTCNNCGEEGHRRVDCTNP- 434
Query: 270 SLDDLKEVQCYICRCFGHLC--CVNISDAVPGEVSCFRCGQLGHT 312
+++ C C GH+ C D P V C C ++GH+
Sbjct: 435 -----RKIICNNCDEEGHVGRDCPKPRD--PARVKCRNCDEMGHS 472
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 57/129 (44%), Gaps = 19/129 (14%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
CYNC E GH++ C + + P + + C C + GHRA+DCP++
Sbjct: 295 CYNCKETGHVSRACPQERQARDPSDI------------PSIKCVNCDQEGHRARDCPEER 342
Query: 243 KSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVS 302
K +N C CG+ GH+ C D VQC C GH + DA +++
Sbjct: 343 KQ-RRNPNACRNCGEEGHEAKECEKPR---DASNVQCRKCEKMGHF-SKDCPDAP--KMT 395
Query: 303 CFRCGQLGH 311
C C Q GH
Sbjct: 396 CRNCDQEGH 404
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFICKK 230
P +G TC NCGEEGH V+C + RK C C H R C K +D C C +
Sbjct: 412 PKKG-MTCNNCGEEGHRRVDCTNP--RKIICNNCDEEGHVGRDCPKPRDPARVKCRNCDE 468
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
GH AK+CP K + C +CG+ GH +C N
Sbjct: 469 MGHSAKECP---KPRDMSRIKCNECGEMGHWSRNCTN 502
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 19/127 (14%)
Query: 146 DNGDEGVTTVEISDNIVLRKLLRGPRYF-------DPPDRGWQTCYNCGEEGHMAVNCRS 198
D G+ + ++ + + G +F D P C C EEGH A C +
Sbjct: 12 DEGEWVPPPMPVATGLTTNNISSGDNFFEDGADGGDRPRGAPGACRRCNEEGHFAAECPN 71
Query: 199 AVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDS 258
+ C CG H +C + C IC GH +CP K + Q C CG++
Sbjct: 72 -----QKCSCCGQKGHSASKCPTPK-CNICNTEGHIPFECPQK------DNQACRHCGET 119
Query: 259 GHDMFSC 265
GH + C
Sbjct: 120 GHMVKEC 126
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 55/135 (40%), Gaps = 12/135 (8%)
Query: 158 SDNIVLRKLLRGPRYF-DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
+ N+ RK + + D PD TC NC +EGH A C K+ C CG H
Sbjct: 370 ASNVQCRKCEKMGHFSKDCPDAPKMTCRNCDQEGHRAAEC-PEPKKGMTCNNCGEEGHRR 428
Query: 217 RQCSKAQD--CFICKKGGHRAKDCPDKHKSGFQNAQV-CLKCGDSGHDMFSCRNSYSLDD 273
C+ + C C + GH +DCP A+V C C + GH C D
Sbjct: 429 VDCTNPRKIICNNCDEEGHVGRDCPKPRDP----ARVKCRNCDEMGHSAKECPKPR---D 481
Query: 274 LKEVQCYICRCFGHL 288
+ ++C C GH
Sbjct: 482 MSRIKCNECGEMGHW 496
>gi|427787167|gb|JAA59035.1| Putative e3 ubiquitin ligase [Rhipicephalus pulchellus]
Length = 240
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 19/139 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK---------AQDCFICKKGG 232
+CYNCG+ GH+A C+ +++K C++C H R C + + C++C K G
Sbjct: 103 SCYNCGKMGHIARECK---EQEKTCYICHKQGHISRDCEQDERRSGAGLSLQCYLCGKLG 159
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVN 292
H ++DCP+ + + + C CG GH C + D + +V CY C GH+
Sbjct: 160 HISRDCPNSER----DDRKCYNCGHLGHISRDCPEAGGNDAVADV-CYRCNERGHI--AR 212
Query: 293 ISDAVPGEVSCFRCGQLGH 311
+ C+ CG++GH
Sbjct: 213 NCRSTRANNRCYHCGEVGH 231
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 73/167 (43%), Gaps = 39/167 (23%)
Query: 173 FDPPDRGWQTCYNCGEEGHMAVNCRSAVKR-------------------KKPCFVCGSLE 213
+ PP R + CY C GH A +C+ A R + C+ CG +
Sbjct: 54 YKPPIR--EKCYKCNRIGHFARDCKEAEDRCYRCNGTGHISKDCQHGPDEMSCYNCGKMG 111
Query: 214 HGVRQCSKAQ-DCFICKKGGHRAKDC-PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSL 271
H R+C + + C+IC K GH ++DC D+ +SG + C CG GH C NS
Sbjct: 112 HIARECKEQEKTCYICHKQGHISRDCEQDERRSGAGLSLQCYLCGKLGHISRDCPNS-ER 170
Query: 272 DDLKEVQCYICRCFGHLCCVNISDAVPGEVS-------CFRCGQLGH 311
DD K CY C GHL +IS P C+RC + GH
Sbjct: 171 DDRK---CYNC---GHL--GHISRDCPEAGGNDAVADVCYRCNERGH 209
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 19/119 (15%)
Query: 181 QTCYNCGEEGHMAVNC-----RSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKG 231
+TCY C ++GH++ +C RS C++CG L H R C ++ C+ C
Sbjct: 122 KTCYICHKQGHISRDCEQDERRSGAGLSLQCYLCGKLGHISRDCPNSERDDRKCYNCGHL 181
Query: 232 GHRAKDCPDKHKSGFQNA--QVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
GH ++DCP+ +G +A VC +C + GH +CR++ + + +CY C GHL
Sbjct: 182 GHISRDCPE---AGGNDAVADVCYRCNERGHIARNCRSTRANN-----RCYHCGEVGHL 232
>gi|326492548|dbj|BAK02057.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 268
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 11/115 (9%)
Query: 206 CFVCGSLEHGVRQCS------KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
CF+C +H + C K + C +C++ GH K+CPDK + + C CG+SG
Sbjct: 72 CFICKGTDHAAKNCPEKSYWDKNKICLLCRERGHSMKNCPDKGDGDLK--KFCYNCGESG 129
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
H + C C++C+ GHL C + P C CG++ H
Sbjct: 130 HSLSKCPKPIENGGTNFASCFVCKQQGHLSKDCPESTHGIYPKGGCCKICGEVTH 184
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYI 281
+ CFICK H AK+CP+ KS + ++CL C + GH M +C + DLK+ CY
Sbjct: 69 GEQCFICKGTDHAAKNCPE--KSYWDKNKICLLCRERGHSMKNCPDK-GDGDLKKF-CYN 124
Query: 282 CRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
C GH C I + SCF C Q GH
Sbjct: 125 CGESGHSLSKCPKPIENGGTNFASCFVCKQQGH 157
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 181 QTCYNCGEEGHMAVNC--RSAVKRKKPCFVCGSLEHGVRQCSKA--------QDCFICKK 230
+ C C E GH NC + KK C+ CG H + +C K CF+CK+
Sbjct: 95 KICLLCRERGHSMKNCPDKGDGDLKKFCYNCGESGHSLSKCPKPIENGGTNFASCFVCKQ 154
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
GH +KDCP+ + C CG+ H C N
Sbjct: 155 QGHLSKDCPESTHGIYPKGGCCKICGEVTHLARHCPN 191
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 16/107 (14%)
Query: 159 DNIVLRKLLRGPRYFDPPDRG----WQTCYNCGEEGHMAVNCRSAVKRK----KPCFVCG 210
+ I L RG + PD+G + CYNCGE GH C ++ CFVC
Sbjct: 94 NKICLLCRERGHSMKNCPDKGDGDLKKFCYNCGESGHSLSKCPKPIENGGTNFASCFVCK 153
Query: 211 SLEHGVRQCSKAQD--------CFICKKGGHRAKDCPDKHKSGFQNA 249
H + C ++ C IC + H A+ CP+K + F+++
Sbjct: 154 QQGHLSKDCPESTHGIYPKGGCCKICGEVTHLARHCPNKRQQYFESS 200
>gi|67968237|dbj|BAE00180.1| VASA RNA helicase [Daphnia magna]
Length = 779
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 179 GWQTCYNCGEEGHMAVNC----RSAVKRKKPCFVCGSLEHGVRQCSKA--------QDCF 226
G + C+ CGEEGHMA C + C CG H R+C +A + C
Sbjct: 137 GGRPCHKCGEEGHMARECPKGGGGGGGGSRACHKCGEEGHFSRECPQAGGGGGSGPRTCH 196
Query: 227 ICKKGGHRAKDCPD--KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRC 284
C + GH +++CP G ++ C KCG+ GH C C+ C
Sbjct: 197 KCGEEGHFSRECPQGGGGGGGGGGSRACHKCGEEGHFSRECPQGGGGGGSGPRTCHKCGE 256
Query: 285 FGHLCCVNISDAVPGEVSCFRCGQLGHT 312
GH+ G+ CF+C + GHT
Sbjct: 257 EGHMSRDCPQGGGGGDGKCFKCHEAGHT 284
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 19/117 (16%)
Query: 181 QTCYNCGEEGHMAVNC------RSAVKRKKPCFVCGSLEHGVRQCSK--------AQDCF 226
+TC+ CGEEGH + C + C CG H R+C + + C
Sbjct: 193 RTCHKCGEEGHFSRECPQGGGGGGGGGGSRACHKCGEEGHFSRECPQGGGGGGSGPRTCH 252
Query: 227 ICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYS--LDDLKEVQCYI 281
C + GH ++DCP C KC ++GH C N +S +D K + YI
Sbjct: 253 KCGEEGHMSRDCPQGGGG---GDGKCFKCHEAGHTSKDCPNPFSELTEDGKPREQYI 306
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 5/102 (4%)
Query: 215 GVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
G++ + C C + GH A++CP G ++ C KCG+ GH C +
Sbjct: 131 GLKSTGGGRPCHKCGEEGHMARECPKGGGGGGGGSRACHKCGEEGHFSRECPQAGGGGGS 190
Query: 275 KEVQCYICRCFGHLC-----CVNISDAVPGEVSCFRCGQLGH 311
C+ C GH G +C +CG+ GH
Sbjct: 191 GPRTCHKCGEEGHFSRECPQGGGGGGGGGGSRACHKCGEEGH 232
>gi|123325507|gb|ABM74410.1| vasa protein [Botrylloides violaceus]
Length = 630
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 183 CYNCGEEGHMAVNC---RSAVKRKKPCFVCGSLEHGVRQCSKAQD-------CFICKKGG 232
C+ CGEEGHM+ +C R K CF CG H R C CF C + G
Sbjct: 43 CFKCGEEGHMSRDCPSGGGGGSRSKGCFKCGEEGHMSRDCPSGGGGGSRSKGCFKCGEEG 102
Query: 233 HRAKDCPDKHKSGFQ--------NAQVCLKCGDSGH 260
H ++DCP+ KS F + C KCG+ GH
Sbjct: 103 HISRDCPNGQKSDFSRNGAGDCARSTACYKCGEEGH 138
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 42/102 (41%), Gaps = 16/102 (15%)
Query: 202 RKKPCFVCGSLEHGVRQCS-------KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLK 254
R K CF CG H R C +++ CF C + GH ++DCP G ++ C K
Sbjct: 39 RSKGCFKCGEEGHMSRDCPSGGGGGSRSKGCFKCGEEGHMSRDCPSGGGGG-SRSKGCFK 97
Query: 255 CGDSGHDMFSCRNSYSLDD--------LKEVQCYICRCFGHL 288
CG+ GH C N D + CY C GH
Sbjct: 98 CGEEGHISRDCPNGQKSDFSRNGAGDCARSTACYKCGEEGHF 139
Score = 37.7 bits (86), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 13/103 (12%)
Query: 220 SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQC 279
S+++ CF C + GH ++DCP G ++ C KCG+ GH C + + C
Sbjct: 38 SRSKGCFKCGEEGHMSRDCPSGGGGG-SRSKGCFKCGEEGHMSRDCPSG-GGGGSRSKGC 95
Query: 280 YICRCFGHLC--CVN-----ISDAVPGE----VSCFRCGQLGH 311
+ C GH+ C N S G+ +C++CG+ GH
Sbjct: 96 FKCGEEGHISRDCPNGQKSDFSRNGAGDCARSTACYKCGEEGH 138
>gi|261192892|ref|XP_002622852.1| zinc knuckle domain-containing protein [Ajellomyces dermatitidis
SLH14081]
gi|239588987|gb|EEQ71630.1| zinc knuckle domain-containing protein [Ajellomyces dermatitidis
SLH14081]
gi|327352663|gb|EGE81520.1| hypothetical protein BDDG_04462 [Ajellomyces dermatitidis ATCC
18188]
Length = 190
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 23/106 (21%)
Query: 181 QTCYNCGEEGHMAVNC-------------------RSAVKRKKPCFVCGSLEHGVRQCSK 221
Q CY CG+ GH+A NC R++ C+ CG H R C++
Sbjct: 89 QECYKCGQVGHIARNCSQSGGYGSAGYGGAGGYGGGYGGGRQQTCYSCGGYGHMARDCTQ 148
Query: 222 AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
Q C+ C + GH ++DCP + K +VC KC +GH +C N
Sbjct: 149 GQKCYNCGEVGHVSRDCPTEAK----GERVCYKCKQTGHVQAACPN 190
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 70/176 (39%), Gaps = 52/176 (29%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA----------- 222
D P +G TCYNCG +GH++ C +A ++K C+ CG H R C+ A
Sbjct: 22 DCPKKGTPTCYNCGGQGHVSREC-TAAPKEKTCYRCGQTGHISRDCTSAGSGDNYTSGGY 80
Query: 223 --------QDCFICKKGGHRAKDCPDKHKSGFQNA---------------QVCLKCGDSG 259
Q+C+ C + GH A++C G Q C CG G
Sbjct: 81 SGGGAAGGQECYKCGQVGHIARNCSQSGGYGSAGYGGAGGYGGGYGGGRQQTCYSCGGYG 140
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVP----GEVSCFRCGQLGH 311
H + D + +CY C GH +S P GE C++C Q GH
Sbjct: 141 H--------MARDCTQGQKCYNCGEVGH-----VSRDCPTEAKGERVCYKCKQTGH 183
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 33/92 (35%), Gaps = 35/92 (38%)
Query: 220 SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQC 279
S ++ CF C + H+A+DCP K C CG GH C
Sbjct: 5 SGSRGCFNCGEASHQARDCPKK------GTPTCYNCGGQGHVSREC-------------- 44
Query: 280 YICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
A P E +C+RCGQ GH
Sbjct: 45 ---------------TAAPKEKTCYRCGQTGH 61
>gi|221222214|gb|ACM09768.1| Cellular nucleic acid-binding protein [Salmo salar]
Length = 143
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 63/140 (45%), Gaps = 26/140 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----------CFVCGSLEHGVRQCSKAQD-CFICKKG 231
C+ CG GH NC A R + C+ CG H R C + +D C+ C +
Sbjct: 8 CFRCGRPGHWIKNCPEAGGRGRGRGRGRGKDLFCYRCGEQGHIARDCEQTEDACYNCHRS 67
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCV 291
GH ++DC + K + Q C CG +GH C +V+CY C GH V
Sbjct: 68 GHISRDCKEPKK---EREQCCYSCGKAGHIQKLC---------DKVKCYRCGEIGH---V 112
Query: 292 NISDAVPGEVSCFRCGQLGH 311
+ + EV+C++CG GH
Sbjct: 113 AVQCSKASEVNCYKCGNTGH 132
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--CFICKKG 231
+P Q CY+CG+ GH+ C K C+ CG + H QCSKA + C+ C
Sbjct: 76 EPKKEREQCCYSCGKAGHIQKLC-----DKVKCYRCGEIGHVAVQCSKASEVNCYKCGNT 130
Query: 232 GHRAKDC 238
GH AK+C
Sbjct: 131 GHLAKEC 137
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
CYNC GH++ +C+ K R++ C+ CG H + C K + C+ C + GH A C
Sbjct: 60 ACYNCHRSGHISRDCKEPKKEREQCCYSCGKAGHIQKLCDKVK-CYRCGEIGHVAVQCS- 117
Query: 241 KHKSGFQNAQVCLKCGDSGH 260
K+ N C KCG++GH
Sbjct: 118 --KASEVN---CYKCGNTGH 132
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 31/117 (26%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKSGFQNAQ------VCLKCGDSGHDMFSCRNSYSLDDLK 275
+ +CF C + GH K+CP+ G + C +CG+ GH C +
Sbjct: 5 SSECFRCGRPGHWIKNCPEAGGRGRGRGRGRGKDLFCYRCGEQGHIARDCEQT------- 57
Query: 276 EVQCYICRCFGHL-------------CCVNISDA-----VPGEVSCFRCGQLGHTGL 314
E CY C GH+ CC + A + +V C+RCG++GH +
Sbjct: 58 EDACYNCHRSGHISRDCKEPKKEREQCCYSCGKAGHIQKLCDKVKCYRCGEIGHVAV 114
>gi|239613570|gb|EEQ90557.1| zinc knuckle domain-containing protein [Ajellomyces dermatitidis
ER-3]
Length = 185
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 23/106 (21%)
Query: 181 QTCYNCGEEGHMAVNC-------------------RSAVKRKKPCFVCGSLEHGVRQCSK 221
Q CY CG+ GH+A NC R++ C+ CG H R C++
Sbjct: 84 QECYKCGQVGHIARNCSQSGGYGSAGYGGAGGYGGGYGGGRQQTCYSCGGYGHMARDCTQ 143
Query: 222 AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
Q C+ C + GH ++DCP + K +VC KC +GH +C N
Sbjct: 144 GQKCYNCGEVGHVSRDCPTEAK----GERVCYKCKQTGHVQAACPN 185
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 65/163 (39%), Gaps = 43/163 (26%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCSKA---QDCFICKKGGHR 234
G + C+NCGE H A +C K+ P C+ CG R+C+ A + C+ C + GH
Sbjct: 6 GSRGCFNCGEASHQARDC---PKKGTPTCYNCGG-----RECTAAPKEKTCYRCGQTGHI 57
Query: 235 AKDCPD-----------KHKSGFQNAQVCLKCGDSGHDMFSCRN---------------S 268
++DC G Q C KCG GH +C
Sbjct: 58 SRDCTSAGSGDNYTSGGYSGGGAAGGQECYKCGQVGHIARNCSQSGGYGSAGYGGAGGYG 117
Query: 269 YSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
++ CY C +GH+ D G+ C+ CG++GH
Sbjct: 118 GGYGGGRQQTCYSCGGYGHM----ARDCTQGQ-KCYNCGEVGH 155
Score = 40.4 bits (93), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 53/146 (36%), Gaps = 50/146 (34%)
Query: 181 QTCYNCGEEGHMAVNCRSA---------------VKRKKPCFVCGSLEHGVRQCS----- 220
+TCY CG+ GH++ +C SA + C+ CG + H R CS
Sbjct: 46 KTCYRCGQTGHISRDCTSAGSGDNYTSGGYSGGGAAGGQECYKCGQVGHIARNCSQSGGY 105
Query: 221 ------------------KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDM 262
+ Q C+ C GH A+DC Q C CG+ GH
Sbjct: 106 GSAGYGGAGGYGGGYGGGRQQTCYSCGGYGHMARDCTQ--------GQKCYNCGEVGHVS 157
Query: 263 FSCRNSYSLDDLKEVQCYICRCFGHL 288
C + E CY C+ GH+
Sbjct: 158 RDC----PTEAKGERVCYKCKQTGHV 179
>gi|255931619|ref|XP_002557366.1| Pc12g05190 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581985|emb|CAP80146.1| Pc12g05190 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 182
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 21/106 (19%)
Query: 179 GWQTCYNCGEEGHMAVNC-----------------RSAVKRKKPCFVCGSLEHGVRQCSK 221
G Q CY CG+ GH+A NC A R++ C+ CG H R C++
Sbjct: 81 GSQECYKCGQVGHIARNCSQGGNYGGYSAGGYGGFGGAGGRQQTCYSCGGFGHMARDCTQ 140
Query: 222 AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
Q C+ C + GH ++DCP + K ++C KC GH +C N
Sbjct: 141 GQKCYNCGEVGHVSRDCPTEAKG----ERMCYKCKQPGHVQSACPN 182
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 68/157 (43%), Gaps = 25/157 (15%)
Query: 173 FDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQC---SKAQDCFIC 228
F P RG C+NCGE H A +C P + C H R+C +K + C+ C
Sbjct: 3 FPPAGRGG--CFNCGEASHQAKDCPKKGNPTCPNSYNCNGQGHLSRECQEPAKEKSCYRC 60
Query: 229 KKGGHRAKDCPDKHKSGF-QNAQVCLKCGDSGHDMFSCRN-------------SYSLDDL 274
+ GH +++CP S + +Q C KCG GH +C +
Sbjct: 61 GQTGHLSRECPQGGDSNYGGGSQECYKCGQVGHIARNCSQGGNYGGYSAGGYGGFGGAGG 120
Query: 275 KEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
++ CY C FGH+ D G+ C+ CG++GH
Sbjct: 121 RQQTCYSCGGFGHM----ARDCTQGQ-KCYNCGEVGH 152
>gi|255539441|ref|XP_002510785.1| actin depolymerizing factor, putative [Ricinus communis]
gi|223549900|gb|EEF51387.1| actin depolymerizing factor, putative [Ricinus communis]
Length = 498
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 10/117 (8%)
Query: 206 CFVCGSLEHGVRQCSKAQD------CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
CF+C + +H + C + + C +C++ GH K CP+K + ++C CG++G
Sbjct: 80 CFICKAKDHIAKLCPQKAEWERNKICLLCRQRGHSLKRCPNKKDENV-DRKLCYNCGETG 138
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGHTG 313
H + +C K C+IC GHL C N P C CG + H
Sbjct: 139 HSLSNCPQPLKNGGTKYANCFICNESGHLSKDCPQNTRGIYPKGGCCKICGGVTHLA 195
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
+ CYNCGE GH NC +K +K +CFIC + GH +KDCP
Sbjct: 129 KLCYNCGETGHSLSNCPQPLKNGG---------------TKYANCFICNESGHLSKDCPQ 173
Query: 241 KHKSGFQNAQVCLKCGDSGH 260
+ + C CG H
Sbjct: 174 NTRGIYPKGGCCKICGGVTH 193
>gi|294943015|ref|XP_002783737.1| cellular nucleic acid binding protein, putative [Perkinsus marinus
ATCC 50983]
gi|239896385|gb|EER15533.1| cellular nucleic acid binding protein, putative [Perkinsus marinus
ATCC 50983]
Length = 110
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 17/91 (18%)
Query: 181 QTCYNCGEEGHMAVNC-------RSAVKRKKPCFVCGSLEHGVRQCSKAQD----CFICK 229
Q C+ C E GH A NC A +R + C+ CG +H R C K Q CF C+
Sbjct: 8 QACFICNETGHYARNCPRQFDDDSRARRRPQNCYNCGQPDHLARDCPKDQSNDRPCFKCQ 67
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
+ GH A+DCP + + C +CG SGH
Sbjct: 68 QVGHFARDCPSA------DTRNCFRCGQSGH 92
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 170 PRYFDPPDRGW---QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA--QD 224
PR FD R Q CYNCG+ H+A +C +PCF C + H R C A ++
Sbjct: 24 PRQFDDDSRARRRPQNCYNCGQPDHLARDCPKDQSNDRPCFKCQQVGHFARDCPSADTRN 83
Query: 225 CFICKKGGHRAKDCP 239
CF C + GH A++CP
Sbjct: 84 CFRCGQSGHLARECP 98
Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 220 SKAQDCFICKKGGHRAKDCP---DKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKE 276
+ +Q CFIC + GH A++CP D + Q C CG H C D +
Sbjct: 5 APSQACFICNETGHYARNCPRQFDDDSRARRRPQNCYNCGQPDHLARDC----PKDQSND 60
Query: 277 VQCYICRCFGHLCCVNISDAVPGEV-SCFRCGQLGH 311
C+ C+ GH D + +CFRCGQ GH
Sbjct: 61 RPCFKCQQVGHF----ARDCPSADTRNCFRCGQSGH 92
>gi|427787097|gb|JAA59000.1| Putative e3 ubiquitin ligase [Rhipicephalus pulchellus]
Length = 554
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD-DLKEVQCY 280
A+ CF C++ GHR DCP + + +C KCG + H +C S D + +C+
Sbjct: 407 AKLCFKCRQPGHRVSDCPQMLQDSSEPIGICFKCGSTEHFSSACTVQTSKDNEFPYAKCF 466
Query: 281 ICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
IC+ GHL C N P C CG + H
Sbjct: 467 ICKQQGHLSRKCPRNDKGVYPKGGHCNFCGAIDH 500
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 13/96 (13%)
Query: 183 CYNCGEEGHMAVNCRSAVK-RKKP---CFVCGSLEHGVRQCS---------KAQDCFICK 229
C+ C + GH +C ++ +P CF CGS EH C+ CFICK
Sbjct: 410 CFKCRQPGHRVSDCPQMLQDSSEPIGICFKCGSTEHFSSACTVQTSKDNEFPYAKCFICK 469
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ GH ++ CP K + C CG H C
Sbjct: 470 QQGHLSRKCPRNDKGVYPKGGHCNFCGAIDHFKKEC 505
>gi|213404984|ref|XP_002173264.1| cellular nucleic acid-binding protein [Schizosaccharomyces
japonicus yFS275]
gi|212001311|gb|EEB06971.1| cellular nucleic acid-binding protein [Schizosaccharomyces
japonicus yFS275]
Length = 175
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 65/155 (41%), Gaps = 38/155 (24%)
Query: 169 GPRYFDPPDRGWQT--------CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS 220
GPR ++ + G Q CYNC + GH A C S +R+K C+ CG+
Sbjct: 13 GPRCYNCNEIGHQARECVKGSICYNCNQTGHKANEC-SEPQREKACYNCGTA-------- 63
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKE---- 276
GH +DCP + NA+ C KCG GH +CR S +
Sbjct: 64 -----------GHLVRDCPTAPPNPRANAE-CYKCGRVGHIARACRTSGPAAGGRPGRSN 111
Query: 277 VQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
+ CY C FGH D G V C+ CG+ GH
Sbjct: 112 LNCYACGSFGH----QARDCTQG-VKCYSCGKTGH 141
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 175 PPD-RGWQTCYNCGEEGHMAVNCRSA--VKRKKP------CFVCGSLEHGVRQCSKAQDC 225
PP+ R CY CG GH+A CR++ +P C+ CGS H R C++ C
Sbjct: 74 PPNPRANAECYKCGRVGHIARACRTSGPAAGGRPGRSNLNCYACGSFGHQARDCTQGVKC 133
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ C K GHR+ +C +SG Q+C KC GH C
Sbjct: 134 YSCGKTGHRSFEC---EQSG--GGQLCYKCNQPGHIAVDC 168
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 23/103 (22%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP---CFVCGSLEHGVRQCSKAQ------------DC 225
+ CYNCG GH+ +C +A + C+ CG + H R C + +C
Sbjct: 55 KACYNCGTAGHLVRDCPTAPPNPRANAECYKCGRVGHIARACRTSGPAAGGRPGRSNLNC 114
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
+ C GH+A+DC K C CG +GH F C S
Sbjct: 115 YACGSFGHQARDCTQGVK--------CYSCGKTGHRSFECEQS 149
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 169 GPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA---QDC 225
GP P R CY CG GH A +C VK C+ CG H +C ++ Q C
Sbjct: 100 GPAAGGRPGRSNLNCYACGSFGHQARDCTQGVK----CYSCGKTGHRSFECEQSGGGQLC 155
Query: 226 FICKKGGHRAKDC 238
+ C + GH A DC
Sbjct: 156 YKCNQPGHIAVDC 168
>gi|240849635|ref|NP_001155824.1| Zinc finger, CCHC domain containing 9-like [Acyrthosiphon pisum]
gi|239787929|dbj|BAH70666.1| ACYPI009958 [Acyrthosiphon pisum]
Length = 263
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKK--PCFVCGSLEHGVRQCSKAQD--------CFICKK 230
+ C++C + GHM C CF CGS EH + +C A + CFIC +
Sbjct: 115 KACFHCRQPGHMLNQCPELGTNTALGVCFKCGSTEHKLHECRNAGNNDQLDFAKCFICNE 174
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
GH ++ CPD + N C CGD H
Sbjct: 175 EGHLSRQCPDNPMGLYPNGGACRSCGDVTH 204
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQ-VCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
CF C++ GH CP+ G A VC KCG + H + CRN+ + D L +C+IC
Sbjct: 117 CFHCRQPGHMLNQCPE---LGTNTALGVCFKCGSTEHKLHECRNAGNNDQLDFAKCFICN 173
Query: 284 CFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
GHL C N P +C CG + H
Sbjct: 174 EEGHLSRQCPDNPMGLYPNGGACRSCGDVTH 204
>gi|77416891|sp|P24740.3|POL_HV1U4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1428
Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ R RGPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 361 EAMSQVQQTSIMMQRGNFRGPRRI--------KCFNCGKEGHLAKNCRAP--RKKGCWKC 410
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 411 GKEGHQMKDCTERQANFL 428
Score = 41.6 bits (96), Expect = 0.50, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + + + ++ G + + CF C K GH AK+C
Sbjct: 346 CQGVGGPGHKARVLAEAMSQVQQTSIM--MQRGNFRGPRRIKCFNCGKEGHLAKNCRAPR 403
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 404 KKG------CWKCGKEGHQMKDC 420
>gi|213137655|gb|ACJ44508.1| gag protein [Human immunodeficiency virus 1]
Length = 261
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 13/120 (10%)
Query: 114 RVRKKKKKEA-DKIEIEDQSVIVRKEEQKV---ETADNGDEGVTTVEISDNIVLRKLLRG 169
R+ K KEA DKIE E + ++ K + + N DE ++ V ++ ++ R +G
Sbjct: 91 RIDVKDTKEALDKIEEEQNKCQQKTQQAKAADGKVSQNYDEAMSQVNNANIMMQRSNFKG 150
Query: 170 PRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
P+ C+NCG+EGH+A NCR+ RKK C+ CG H ++ C + Q F+ K
Sbjct: 151 PKRIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKDCDERQANFLGK 201
>gi|345564451|gb|EGX47414.1| hypothetical protein AOL_s00083g507 [Arthrobotrys oligospora ATCC
24927]
Length = 196
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 72/168 (42%), Gaps = 46/168 (27%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK------------ 221
D P RG CYNCG++GH++ C+S K +K C+ CG H R+C+
Sbjct: 33 DCPKRGNPVCYNCGQDGHLSRECQSPPK-EKSCYRCGQTGHISRECTNESSGSSYSGGNS 91
Query: 222 ------AQDCFICKKGGHRAKDCPD----------KHKSGFQNAQVCLKCGDSGHDMFSC 265
+C+ C K GH A++C ++ SG Q C CG GH
Sbjct: 92 GGAAGSGAECYKCGKVGHIARNCQSGDNGGFGGGNRYASG--RGQTCYSCGGFGH----- 144
Query: 266 RNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVPGEVSCFRCGQLGH 311
S D + +CY C GHL C + D V C++C + GH
Sbjct: 145 ---MSRDCTQGQKCYNCGQIGHLSRDCTSEQDRV-----CYKCKKPGH 184
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 18/95 (18%)
Query: 183 CYNCGEEGHMAVNCRS------------AVKRKKPCFVCGSLEHGVRQCSKAQDCFICKK 230
CY CG+ GH+A NC+S A R + C+ CG H R C++ Q C+ C +
Sbjct: 101 CYKCGKVGHIARNCQSGDNGGFGGGNRYASGRGQTCYSCGGFGHMSRDCTQGQKCYNCGQ 160
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
GH ++DC + +VC KC GH M +C
Sbjct: 161 IGHLSRDCTS------EQDRVCYKCKKPGHIMSNC 189
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 30/153 (19%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQC---SKAQDCFICKKGGHRAK 236
++CYNCG GH A +C KR P C+ CG H R+C K + C+ C + GH ++
Sbjct: 19 RSCYNCGGSGHQAKDC---PKRGNPVCYNCGQDGHLSRECQSPPKEKSCYRCGQTGHISR 75
Query: 237 DCPDKHKSGFQNAQV----------CLKCGDSGHDMFSCRNSYSLDDLKEVQ-------- 278
+C ++ + C KCG GH +C++ + +
Sbjct: 76 ECTNESSGSSYSGGNSGGAAGSGAECYKCGKVGHIARNCQSGDNGGFGGGNRYASGRGQT 135
Query: 279 CYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
CY C FGH+ D G+ C+ CGQ+GH
Sbjct: 136 CYSCGGFGHM----SRDCTQGQ-KCYNCGQIGH 163
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--CFICKKGGHRAKDC 238
QTCY+CG GHM+ +C K C+ CG + H R C+ QD C+ CKK GH +C
Sbjct: 134 QTCYSCGGFGHMSRDCTQGQK----CYNCGQIGHLSRDCTSEQDRVCYKCKKPGHIMSNC 189
Query: 239 PD 240
P+
Sbjct: 190 PE 191
>gi|15233440|ref|NP_195326.1| cellular nucleic acid-binding protein [Arabidopsis thaliana]
gi|75318587|sp|O65639.1|CSP1_ARATH RecName: Full=Cold shock protein 1; Short=AtCSP1; AltName:
Full=Cold shock domain-containing protein 1
gi|3036806|emb|CAA18496.1| glycine-rich protein [Arabidopsis thaliana]
gi|7270554|emb|CAB81511.1| glycine-rich protein [Arabidopsis thaliana]
gi|110741941|dbj|BAE98911.1| glycine-rich protein [Arabidopsis thaliana]
gi|332661203|gb|AEE86603.1| cellular nucleic acid-binding protein [Arabidopsis thaliana]
Length = 299
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 13/96 (13%)
Query: 183 CYNCGEEGHMAVNC---------RSAVKRKKPCFVCGSLEHGVRQCSK----AQDCFICK 229
CY CG+ GH A +C RS C+ CG + H R C+ ++ C+ C
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCG 259
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
GH A+DC + G N C KCG GH C
Sbjct: 260 GSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 63/161 (39%), Gaps = 36/161 (22%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKK---------PCFVCGSLEHGVRQCSKAQ---------- 223
CYNCG+ GH A +C SA + C+ CG + H R C++
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193
Query: 224 -----DCFICKKGGHRAKDCPDK-----HKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDD 273
C+ C GH A+DC K +SG + C CG GH C +
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDC----ATKR 249
Query: 274 LKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
CY C GHL C S + +C++CG+ GH
Sbjct: 250 QPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGH 290
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 55/149 (36%), Gaps = 30/149 (20%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCP--- 239
CYNCGE GH++ +C R+ + C+ C GH A+DC
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGG----------ERRSRGGEGCYNCGDTGHFARDCTSAG 151
Query: 240 --DKHKSGFQNAQVCLKCGDSGHDMFSC-RNSYSLDDLKEV------QCYICRCFGHLC- 289
D+ + C CGD GH C + S D + CY C GH
Sbjct: 152 NGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFAR 211
Query: 290 -CV------NISDAVPGEVSCFRCGQLGH 311
C N+ G +C+ CG +GH
Sbjct: 212 DCTQKVAAGNVRSGGGGSGTCYSCGGVGH 240
>gi|296412703|ref|XP_002836061.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629863|emb|CAZ80218.1| unnamed protein product [Tuber melanosporum]
Length = 183
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 16/93 (17%)
Query: 183 CYNCGEEGHMAVNCRSAVK----------RKKPCFVCGSLEHGVRQCSKAQDCFICKKGG 232
CY CG+ GH+A C ++ R++ C+ CG H R C++ Q C+ C + G
Sbjct: 91 CYKCGKVGHIARQCTASGAGYGGPPGGGARQQTCYSCGGYGHLSRDCTQGQKCYNCGQIG 150
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
H ++DCP + +VC KC GH M SC
Sbjct: 151 HLSRDCPSEQD------RVCYKCKQPGHVMASC 177
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 65/150 (43%), Gaps = 27/150 (18%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCS---KAQDCFICKKGGHRAK 236
+ CYNCGE GH A R KR P C+ CG + R C+ K + C+ C + GH ++
Sbjct: 10 RACYNCGEGGHQA---RECPKRGTPVCYNCGRMFFPRRDCTGPAKEKSCYRCGQTGHLSR 66
Query: 237 DCPDKHK---------SGFQNAQVCLKCGDSGHDMFSCRNS------YSLDDLKEVQCYI 281
DC D + G C KCG GH C S ++ CY
Sbjct: 67 DCNDAPQQVGSFGGGSYGSGGGAECYKCGKVGHIARQCTASGAGYGGPPGGGARQQTCYS 126
Query: 282 CRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
C +GHL D G+ C+ CGQ+GH
Sbjct: 127 CGGYGHL----SRDCTQGQ-KCYNCGQIGH 151
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--CFICKKGGHRAKDC 238
QTCY+CG GH++ +C K C+ CG + H R C QD C+ CK+ GH C
Sbjct: 122 QTCYSCGGYGHLSRDCTQGQK----CYNCGQIGHLSRDCPSEQDRVCYKCKQPGHVMASC 177
Query: 239 PD 240
P+
Sbjct: 178 PE 179
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 57/161 (35%), Gaps = 39/161 (24%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA------------- 222
P RG CYNCG +C K K C+ CG H R C+ A
Sbjct: 26 PKRGTPVCYNCGRMFFPRRDCTGPAKEKS-CYRCGQTGHLSRDCNDAPQQVGSFGGGSYG 84
Query: 223 ----QDCFICKKGGHRAKDCPDKHKSGFQNA------QVCLKCGDSGHDMFSCRNSYSLD 272
+C+ C K GH A+ C Q C CG GH S D
Sbjct: 85 SGGGAECYKCGKVGHIARQCTASGAGYGGPPGGGARQQTCYSCGGYGH--------LSRD 136
Query: 273 DLKEVQCYICRCFGHLCCVNISDAVPGEVS--CFRCGQLGH 311
+ +CY C GHL S P E C++C Q GH
Sbjct: 137 CTQGQKCYNCGQIGHL-----SRDCPSEQDRVCYKCKQPGH 172
>gi|300122354|emb|CBK22926.2| unnamed protein product [Blastocystis hominis]
Length = 158
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 64/157 (40%), Gaps = 36/157 (22%)
Query: 183 CYNCGEEGHMAVNCRSAVKRK----KPCFVCGSLEHGVRQCSKAQD------CFICKKGG 232
CY CG+ GH A +C + ++K K C+VCG H R C C+ C K G
Sbjct: 3 CYVCGQSGHKARDCPNRSQQKPGAGKKCYVCGGFGHVARDCPNQNGENTESVCYNCGKPG 62
Query: 233 HRAKDCPDKHKSGFQNAQ----VCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
H A DCP++ S +C C GH ++ D EV C CR GH+
Sbjct: 63 HIAADCPEERTSRPTGRAAKTIICRNCNKEGH--------FARDCPNEVVCRNCRQPGHI 114
Query: 289 C--CVN------------ISDAVPGEVSCFRCGQLGH 311
C N + P E C +CGQ GH
Sbjct: 115 ARDCTNQAVCRNCNQPGHFARDCPNETVCHKCGQSGH 151
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 43/97 (44%), Gaps = 14/97 (14%)
Query: 171 RYFDPPDRGWQT--CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFIC 228
R P R +T C NC +EGH A +C + V C C H R C+ C C
Sbjct: 72 RTSRPTGRAAKTIICRNCNKEGHFARDCPNEVV----CRNCRQPGHIARDCTNQAVCRNC 127
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ GH A+DCP N VC KCG SGH C
Sbjct: 128 NQPGHFARDCP--------NETVCHKCGQSGHKARDC 156
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 224 DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
+C++C + GH+A+DCP++ + + C CG GH C N + E CY C
Sbjct: 2 ECYVCGQSGHKARDCPNRSQQKPGAGKKCYVCGGFGHVARDCPNQNGEN--TESVCYNCG 59
Query: 284 CFGHL 288
GH+
Sbjct: 60 KPGHI 64
>gi|156720287|dbj|BAF76796.1| Vasa-related protein [Enchytraeus japonensis]
Length = 990
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 52/120 (43%), Gaps = 22/120 (18%)
Query: 178 RGWQTCYNCGEEGHMAVNC------RSAVKRKKP--CFVCGSLEHGVRQCSKAQD----- 224
R + CYNCG EGHM +C RS + P CF CGS H R C + +
Sbjct: 349 RPLRACYNCGNEGHMTRDCTEPRKERSNENSRPPRACFNCGSEAHMSRDCPEPKKERPND 408
Query: 225 -------CFICKKGGHRAKDCPD--KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLK 275
CF C H +++CP+ K + G + + VC +C GH C +D K
Sbjct: 409 NSRPPRACFNCGSEAHMSRECPEPKKEREGGKPSGVCFRCDLEGHMAKDCSKPALTEDGK 468
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 23/106 (21%)
Query: 178 RGWQTCYNCGEEGHMAVNCRSAVKRK-------KPCFVCGSLEHGVRQCSKAQD------ 224
RG + CYNCG + HM+ +C K + + C+ CG+ H R C++ +
Sbjct: 319 RGPRACYNCGSDAHMSRDCPEPRKERSNDSRPLRACYNCGNEGHMTRDCTEPRKERSNEN 378
Query: 225 ------CFICKKGGHRAKDCPDKHKS----GFQNAQVCLKCGDSGH 260
CF C H ++DCP+ K + + C CG H
Sbjct: 379 SRPPRACFNCGSEAHMSRDCPEPKKERPNDNSRPPRACFNCGSEAH 424
>gi|241742586|ref|XP_002412390.1| zinc-finger protein, putative [Ixodes scapularis]
gi|215505716|gb|EEC15210.1| zinc-finger protein, putative [Ixodes scapularis]
Length = 481
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC--RNSYSLDDLKEVQC 279
A+ CF C++ GHR +DCP Q +C KCG + H +C R S S ++ +C
Sbjct: 334 AKLCFKCRQPGHRVQDCPVMLGDSDQAVGICFKCGSTEHFSSACAVRTSAS-NEFPFAKC 392
Query: 280 YICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+IC+ GHL C N A P C CG + H
Sbjct: 393 FICQQQGHLSRKCPQNEKGAYPRGGHCNFCGAVDH 427
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 13/96 (13%)
Query: 183 CYNCGEEGHMAVNCRSAV----KRKKPCFVCGSLEHGVRQCS---------KAQDCFICK 229
C+ C + GH +C + + CF CGS EH C+ CFIC+
Sbjct: 337 CFKCRQPGHRVQDCPVMLGDSDQAVGICFKCGSTEHFSSACAVRTSASNEFPFAKCFICQ 396
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ GH ++ CP K + C CG H C
Sbjct: 397 QQGHLSRKCPQNEKGAYPRGGHCNFCGAVDHFKREC 432
>gi|332079154|gb|AEE00157.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 448
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 10/81 (12%)
Query: 150 EGVTTVEISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V S NI++ R RGP+ + C+NCG+EGH+A NCR+ RKK C+
Sbjct: 365 EAMSQVTASANIMMQRGNFRGPKRIN-------KCFNCGKEGHLARNCRAP--RKKGCWK 415
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 416 CGKEGHQMKDCTERQANFLGK 436
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + R + CF C K GH A++C
Sbjct: 349 ACQGVGGPGHWARVLAEAMSQVTASANIMMQRGNFRGPKRINKCFNCGKEGHLARNCRAP 408
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 409 RKKG------CWKCGKEGHQMKDC 426
>gi|154288428|ref|XP_001545009.1| hypothetical protein HCAG_02056 [Ajellomyces capsulatus NAm1]
gi|150408650|gb|EDN04191.1| hypothetical protein HCAG_02056 [Ajellomyces capsulatus NAm1]
Length = 191
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 25/108 (23%)
Query: 181 QTCYNCGEEGHMAVNC---------------------RSAVKRKKPCFVCGSLEHGVRQC 219
Q CY CG+ GH+A NC R++ C+ CG H R C
Sbjct: 88 QECYKCGQVGHIARNCSQSGGYGSGGYGGATGGGYSGGYGGGRQQTCYSCGGYGHMARDC 147
Query: 220 SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
++ Q C+ C + GH ++DCP + K +VC KC GH +C N
Sbjct: 148 TQGQKCYNCGEVGHVSRDCPTEAK----GERVCYKCKQPGHVQATCPN 191
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 59/167 (35%), Gaps = 56/167 (33%)
Query: 164 RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSA-----------------VKRKKPC 206
R+LL G P +TCY CG+ GH++ +C SA + C
Sbjct: 33 RELLPGRECTAAPKE--KTCYRCGQAGHISRDCTSAGSGDSYGNSGGYSGGGGAAGGQEC 90
Query: 207 FVCGSLEHGVRQCS-------------------------KAQDCFICKKGGHRAKDCPDK 241
+ CG + H R CS + Q C+ C GH A+DC
Sbjct: 91 YKCGQVGHIARNCSQSGGYGSGGYGGATGGGYSGGYGGGRQQTCYSCGGYGHMARDC--- 147
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
Q C CG+ GH C + E CY C+ GH+
Sbjct: 148 -----TQGQKCYNCGEVGHVSRDC----PTEAKGERVCYKCKQPGHV 185
>gi|299929701|gb|ADJ58058.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++TV+ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSTVQHANVMMQRGNFKGPRKIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|259149113|emb|CAY82355.1| Gis2p [Saccharomyces cerevisiae EC1118]
gi|365763461|gb|EHN04989.1| Gis2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 153
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 183 CYNCGEEGHMAVNCRSA-VKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
CYNC + GH+ +C K C+ CG + H +C+ Q CF C + GH +++CP+
Sbjct: 25 CYNCNKPGHVQTDCTMPRTVEFKQCYNCGEIGHVRSECT-VQRCFNCNQTGHISRECPEP 83
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEV 301
K+ + C KCG H C D + ++CY C GH+ S +
Sbjct: 84 KKTSRFSKVSCYKCGGPNHMAKDCMKE---DGISGLKCYTCGQAGHM-----SRDCQNDR 135
Query: 302 SCFRCGQLGH 311
C+ C + GH
Sbjct: 136 LCYNCNETGH 145
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 17/89 (19%)
Query: 181 QTCYNCGEEGHMAVNC----RSAVKRKKPCFVCGSLEHGVRQCSK-----AQDCFICKKG 231
Q C+NC + GH++ C +++ K C+ CG H + C K C+ C +
Sbjct: 65 QRCFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISGLKCYTCGQA 124
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
GH ++DC QN ++C C ++GH
Sbjct: 125 GHMSRDC--------QNDRLCYNCNETGH 145
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 48/126 (38%), Gaps = 19/126 (15%)
Query: 203 KKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQ--------------- 247
+K C+VCG + H C + C+ C K GH DC F+
Sbjct: 3 QKACYVCGKIGHLAEDCDSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGEIGHVRSEC 62
Query: 248 NAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVPGEVSCFR 305
Q C C +GH C +V CY C H+ C+ D + G + C+
Sbjct: 63 TVQRCFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMK-EDGISG-LKCYT 120
Query: 306 CGQLGH 311
CGQ GH
Sbjct: 121 CGQAGH 126
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 182 TCYNCGEEGHMAVNCR-----SAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAK 236
+CY CG HMA +C S +K C+ CG H R C + C+ C + GH +K
Sbjct: 93 SCYKCGGPNHMAKDCMKEDGISGLK----CYTCGQAGHMSRDCQNDRLCYNCNETGHISK 148
Query: 237 DCP 239
DCP
Sbjct: 149 DCP 151
>gi|58004785|gb|AAW62455.1| cellular nucleic acid binding protein mutant H128Q [synthetic
construct]
Length = 178
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 63/134 (47%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 55 CYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPRKEREQCCYNCGKPGHLARD 111
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ G D +V+CY C GH V I+ +
Sbjct: 112 CE------HADEQKCYSCGEFGQIQ---------KDCTKVKCYRCGDTGH---VAINCSK 153
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 154 TSEVNCYRCGESGH 167
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 52/110 (47%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ K R++ C+ CG H R C A Q C+ C + G KDC
Sbjct: 74 ACYNCGRGGHIAKDCKEPRKEREQCCYNCGKPGHLARDCEHADEQKCYSCGEFGQIQKDC 133
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CGD+GH +C + EV CY C GHL
Sbjct: 134 ---------TKVKCYRCGDTGHVAINCSKT------SEVNCYRCGESGHL 168
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 16/110 (14%)
Query: 206 CFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFS 264
C+ CG H + C +D C+ C +GGH AKDC + K + Q C CG GH
Sbjct: 55 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPRK---EREQCCYNCGKPGHLARD 111
Query: 265 CRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C ++ E +CY C FG + D +V C+RCG GH +
Sbjct: 112 CEHA------DEQKCYSCGEFGQI----QKDCT--KVKCYRCGDTGHVAI 149
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG + C+K + C+ C GH
Sbjct: 90 EPRKEREQCCYNCGKPGHLARDCEHADEQK--CYSCGEFGQIQKDCTKVK-CYRCGDTGH 146
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 147 VAINCS-------KTSEVNCYRCGESGH 167
>gi|7263178|gb|AAF44118.1| cellular nucleic acid binding protein mutant H107Q [synthetic
construct]
Length = 178
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 63/134 (47%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K G A+D
Sbjct: 55 CYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPRKEREQCCYNCGKPGQLARD 111
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 112 CE------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGDTGH---VAINCSK 153
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 154 TSEVNCYRCGESGH 167
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 52/110 (47%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ K R++ C+ CG R C A Q C+ C + GH KDC
Sbjct: 74 ACYNCGRGGHIAKDCKEPRKEREQCCYNCGKPGQLARDCEHADEQKCYSCGEFGHIQKDC 133
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CGD+GH +C + EV CY C GHL
Sbjct: 134 ---------TKVKCYRCGDTGHVAINCSKT------SEVNCYRCGESGHL 168
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 16/110 (14%)
Query: 206 CFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFS 264
C+ CG H + C +D C+ C +GGH AKDC + K + Q C CG G
Sbjct: 55 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPRK---EREQCCYNCGKPGQLARD 111
Query: 265 CRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C ++ E +CY C FGH+ D +V C+RCG GH +
Sbjct: 112 CEHA------DEQKCYSCGEFGHI----QKDCT--KVKCYRCGDTGHVAI 149
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ G +A +C A ++K C+ CG H + C+K + C+ C GH
Sbjct: 90 EPRKEREQCCYNCGKPGQLARDCEHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGDTGH 146
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 147 VAINCS-------KTSEVNCYRCGESGH 167
>gi|417398164|gb|JAA46115.1| Putative e3 ubiquitin ligase [Desmodus rotundus]
Length = 271
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C +A++ + C+ CGS EH + +C D CF+
Sbjct: 129 VCFHCRKPGHGIADCPAALESQDMGTGICYRCGSTEHEITKCKANVDPALGEFPFAKCFV 188
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
C + GH ++ CPD K + + C CG GH C S D + V
Sbjct: 189 CGEMGHLSRSCPDNPKGVYADGGCCRLCGSVGHFKKDCPQSQHSDQMVTV 238
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGH---LCCVNISDAV 297
K ++ +NA VC C GH + C + D+ CY C H C N+ A+
Sbjct: 119 KRQAAKKNAMVCFHCRKPGHGIADCPAALESQDMGTGICYRCGSTEHEITKCKANVDPAL 178
Query: 298 PGEVS---CFRCGQLGH 311
GE CF CG++GH
Sbjct: 179 -GEFPFAKCFVCGEMGH 194
>gi|213403956|ref|XP_002172750.1| zf-CCHC type zinc finger protein [Schizosaccharomyces japonicus
yFS275]
gi|212000797|gb|EEB06457.1| zf-CCHC type zinc finger protein [Schizosaccharomyces japonicus
yFS275]
Length = 215
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA-----QDCFICKKGGHRAKD 237
C+ C ++GH+ +C + K CF CGS EH + C+K CFICK GH A
Sbjct: 75 CFGCRKQGHILQDCPESGNSKAICFRCGSTEHTLSSCAKKGPLEFATCFICKAKGHLASK 134
Query: 238 CPDKHKSGFQNAQVCLKCGDSGH 260
CPD K + C C H
Sbjct: 135 CPDNPKGLYPRGGGCKLCSSVHH 157
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRC 284
CF C+K GH +DCP+ SG A +C +CG + H + SC L+ C+IC+
Sbjct: 75 CFGCRKQGHILQDCPE---SGNSKA-ICFRCGSTEHTLSSCAKK---GPLEFATCFICKA 127
Query: 285 FGHL---CCVNISDAVPGEVSCFRCGQLGH 311
GHL C N P C C + H
Sbjct: 128 KGHLASKCPDNPKGLYPRGGGCKLCSSVHH 157
>gi|295658168|ref|XP_002789646.1| DNA-binding protein HEXBP [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283131|gb|EEH38697.1| DNA-binding protein HEXBP [Paracoccidioides sp. 'lutzii' Pb01]
Length = 190
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 22/105 (20%)
Query: 181 QTCYNCGEEGHMAVNCR------------------SAVKRKKPCFVCGSLEHGVRQCSKA 222
Q CY CG+ GH+A NC R++ C+ CG H R C++
Sbjct: 90 QECYKCGQVGHIARNCSQGYSSGGYGSGAGGYGGGYGGNRQQTCYSCGGFGHMARDCTQG 149
Query: 223 QDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
Q C+ C + GH ++DCP + + +VC KC GH +C N
Sbjct: 150 QKCYNCGEVGHVSRDCPTE----VKGERVCYKCKQPGHVQAACPN 190
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 73/172 (42%), Gaps = 44/172 (25%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA----------- 222
D P +G TCYNCG +GH++ C +A ++K C+ CG H R C+ A
Sbjct: 22 DCPKKGTPTCYNCGGQGHVSREC-TAAPKEKTCYRCGQGGHISRDCTSAGSGDSYTPSGG 80
Query: 223 ---------QDCFICKKGGHRAKDCPDKHKSGFQNA--------------QVCLKCGDSG 259
Q+C+ C + GH A++C + SG + Q C CG G
Sbjct: 81 YSGGGGASSQECYKCGQVGHIARNCSQGYSSGGYGSGAGGYGGGYGGNRQQTCYSCGGFG 140
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
H + D + +CY C GH+ + V GE C++C Q GH
Sbjct: 141 H--------MARDCTQGQKCYNCGEVGHV-SRDCPTEVKGERVCYKCKQPGH 183
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 71/163 (43%), Gaps = 38/163 (23%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCSKA---QDCFICKKGGHR 234
G + C+NCG+ H A +C K+ P C+ CG H R+C+ A + C+ C +GGH
Sbjct: 6 GGRGCFNCGDASHQARDC---PKKGTPTCYNCGGQGHVSRECTAAPKEKTCYRCGQGGHI 62
Query: 235 AKDCPDK------------HKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL-------- 274
++DC G ++Q C KCG GH +C YS
Sbjct: 63 SRDCTSAGSGDSYTPSGGYSGGGGASSQECYKCGQVGHIARNCSQGYSSGGYGSGAGGYG 122
Query: 275 ------KEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
++ CY C FGH+ D G+ C+ CG++GH
Sbjct: 123 GGYGGNRQQTCYSCGGFGHM----ARDCTQGQ-KCYNCGEVGH 160
>gi|225684876|gb|EEH23160.1| cellular nucleic acid-binding protein [Paracoccidioides
brasiliensis Pb03]
gi|226287748|gb|EEH43261.1| DNA-binding protein HEXBP [Paracoccidioides brasiliensis Pb18]
Length = 190
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 22/105 (20%)
Query: 181 QTCYNCGEEGHMAVNCR------------------SAVKRKKPCFVCGSLEHGVRQCSKA 222
Q CY CG+ GH+A NC R++ C+ CG H R C++
Sbjct: 90 QECYKCGQVGHIARNCSQGYGSGGYGGGAGGYGGGYGGNRQQTCYSCGGFGHMARDCTQG 149
Query: 223 QDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
Q C+ C + GH ++DCP + + +VC KC GH +C N
Sbjct: 150 QKCYNCGEVGHVSRDCPTE----VKGERVCYKCKQPGHVQAACPN 190
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 72/172 (41%), Gaps = 44/172 (25%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA----------- 222
D P +G TCYNCG +GH++ C +A ++K C+ CG H R C+ A
Sbjct: 22 DCPKKGTPTCYNCGGQGHVSREC-TAAPKEKTCYRCGQGGHISRDCTSAGSGDSYTPSGG 80
Query: 223 ---------QDCFICKKGGHRAKDCPDKHKSGFQNA--------------QVCLKCGDSG 259
Q+C+ C + GH A++C + SG Q C CG G
Sbjct: 81 YSGGGGASSQECYKCGQVGHIARNCSQGYGSGGYGGGAGGYGGGYGGNRQQTCYSCGGFG 140
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
H + D + +CY C GH+ + V GE C++C Q GH
Sbjct: 141 H--------MARDCTQGQKCYNCGEVGHV-SRDCPTEVKGERVCYKCKQPGH 183
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 70/163 (42%), Gaps = 38/163 (23%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCSKA---QDCFICKKGGHR 234
G + C+NCG+ H A +C K+ P C+ CG H R+C+ A + C+ C +GGH
Sbjct: 6 GGRGCFNCGDASHQARDC---PKKGTPTCYNCGGQGHVSRECTAAPKEKTCYRCGQGGHI 62
Query: 235 AKDCPDK------------HKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL-------- 274
++DC G ++Q C KCG GH +C Y
Sbjct: 63 SRDCTSAGSGDSYTPSGGYSGGGGASSQECYKCGQVGHIARNCSQGYGSGGYGGGAGGYG 122
Query: 275 ------KEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
++ CY C FGH+ D G+ C+ CG++GH
Sbjct: 123 GGYGGNRQQTCYSCGGFGHM----ARDCTQGQ-KCYNCGEVGH 160
>gi|340722932|ref|XP_003399853.1| PREDICTED: hypothetical protein LOC100652207 [Bombus terrestris]
Length = 463
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Query: 216 VRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQ--VCLKCGDSGHDMFSCRNSYSLDD 273
+R+C CF C+K GH DCP+ G + A +C KCG + H F C+ + + +
Sbjct: 320 IRKCV----CFHCRKSGHNLSDCPE---LGSEQAGTGICFKCGSTEHTHFECKVAKPM-E 371
Query: 274 LKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+ C+ICR GH+ C N P +C CG + H
Sbjct: 372 FRYATCFICREQGHIAKQCPDNPKGIYPQGGACKICGDVTH 412
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKK---PCFVCGSLEHGVRQCSKAQD-------CFICKKGG 232
C++C + GH +C + CF CGS EH +C A+ CFIC++ G
Sbjct: 325 CFHCRKSGHNLSDCPELGSEQAGTGICFKCGSTEHTHFECKVAKPMEFRYATCFICREQG 384
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
H AK CPD K + C CGD H
Sbjct: 385 HIAKQCPDNPKGIYPQGGACKICGDVTH 412
Score = 37.4 bits (85), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVK---RKKPCFVCGSLEHGVRQCS--------KAQDCFI 227
G C+ CG H C+ A R CF+C H +QC + C I
Sbjct: 347 GTGICFKCGSTEHTHFECKVAKPMEFRYATCFICREQGHIAKQCPDNPKGIYPQGGACKI 406
Query: 228 CKKGGHRAKDCPD 240
C H KDCPD
Sbjct: 407 CGDVTHLKKDCPD 419
>gi|320590859|gb|EFX03302.1| zinc knuckle domain containing protein [Grosmannia clavigera
kw1407]
Length = 190
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 67/171 (39%), Gaps = 41/171 (23%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ---------- 223
D P+RG CYNCG EGHM+ +C K K C+ CG H R C ++
Sbjct: 20 DCPNRGAAKCYNCGGEGHMSRDCPEGPKETKTCYRCGQAGHISRDCPQSAGPGGSGPSGA 79
Query: 224 DCFICKKGGHRAKDCPDKHKSGFQNA-----------------------QVCLKCGDSGH 260
+C+ C + GH A++CP G + + C CG GH
Sbjct: 80 ECYKCGEVGHIARNCPKGGFGGNPSGGAGGYGNSYGGGGGGGGYGGNQNKTCYSCGGVGH 139
Query: 261 DMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
S D + +CY C GH + GE C++C Q GH
Sbjct: 140 --------MSRDCVNGSKCYNCGETGHFSRDCPKASTSGEKICYKCQQPGH 182
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 44/113 (38%), Gaps = 30/113 (26%)
Query: 183 CYNCGEEGHMAVNC---------------------------RSAVKRKKPCFVCGSLEHG 215
CY CGE GH+A NC + K C+ CG + H
Sbjct: 81 CYKCGEVGHIARNCPKGGFGGNPSGGAGGYGNSYGGGGGGGGYGGNQNKTCYSCGGVGHM 140
Query: 216 VRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
R C C+ C + GH ++DCP SG ++C KC GH C N+
Sbjct: 141 SRDCVNGSKCYNCGETGHFSRDCPKASTSG---EKICYKCQQPGHIQADCPNN 190
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 204 KPCFVCGSLEHGVRQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
+ CF CG+ H R C A C+ C GH ++DCP+ G + + C +CG +GH
Sbjct: 6 RACFSCGATTHQARDCPNRGAAKCYNCGGEGHMSRDCPE----GPKETKTCYRCGQAGH 60
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 181 QTCYNCGEEGHMAVNC--RSAVKRKKPCFVCGSLEHGVRQCSKA----QDCFICKKGGHR 234
+ C++CG H A +C R A K C+ CG H R C + + C+ C + GH
Sbjct: 6 RACFSCGATTHQARDCPNRGAAK----CYNCGGEGHMSRDCPEGPKETKTCYRCGQAGHI 61
Query: 235 AKDCPDKHKSGFQNAQV--CLKCGDSGHDMFSC 265
++DCP G C KCG+ GH +C
Sbjct: 62 SRDCPQSAGPGGSGPSGAECYKCGEVGHIARNC 94
>gi|350403681|ref|XP_003486874.1| PREDICTED: hypothetical protein LOC100747634 [Bombus impatiens]
Length = 447
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Query: 216 VRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQ--VCLKCGDSGHDMFSCRNSYSLDD 273
+R+C CF C+K GH DCP+ G + A +C KCG + H F C+ + + +
Sbjct: 320 IRKCV----CFHCRKSGHNLSDCPE---LGSEQAGTGICFKCGSTEHTHFECKVAKPM-E 371
Query: 274 LKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+ C+ICR GH+ C N P +C CG + H
Sbjct: 372 FRYATCFICREQGHIAKQCPDNPKGIYPQGGACKICGDVTH 412
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKK---PCFVCGSLEHGVRQCSKAQD-------CFICKKG 231
C++C + GH +C + CF CGS EH +C A+ CFIC++
Sbjct: 324 VCFHCRKSGHNLSDCPELGSEQAGTGICFKCGSTEHTHFECKVAKPMEFRYATCFICREQ 383
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
GH AK CPD K + C CGD H
Sbjct: 384 GHIAKQCPDNPKGIYPQGGACKICGDVTH 412
Score = 37.4 bits (85), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVK---RKKPCFVCGSLEHGVRQCS--------KAQDCFI 227
G C+ CG H C+ A R CF+C H +QC + C I
Sbjct: 347 GTGICFKCGSTEHTHFECKVAKPMEFRYATCFICREQGHIAKQCPDNPKGIYPQGGACKI 406
Query: 228 CKKGGHRAKDCPD 240
C H KDCPD
Sbjct: 407 CGDVTHLKKDCPD 419
>gi|319921905|gb|ADV78571.1| universal minicircle sequence-binding protein 1 [Leishmania
donovani]
Length = 115
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 55/111 (49%), Gaps = 12/111 (10%)
Query: 182 TCYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKD 237
TCY CGE GHM+ +C R+A R C+ CG H R C K + C+ C H +++
Sbjct: 5 TCYKCGEAGHMSRSCPRAAATRS--CYNCGETSHMSRDCPSERKPKSCYNCGSTDHLSRE 62
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C ++ K+G + + C CG +GH C N + K CY C HL
Sbjct: 63 CTNEAKAG-ADTRSCYNCGGTGHLSRDCPN-----ERKPKSCYNCGSTDHL 107
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 13/93 (13%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-------AQDCFI 227
P ++CYNCGE HM+ +C S ++ K C+ CGS +H R+C+ + C+
Sbjct: 20 PRAAATRSCYNCGETSHMSRDCPSE-RKPKSCYNCGSTDHLSRECTNEAKAGADTRSCYN 78
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C GH ++DCP++ K + C CG + H
Sbjct: 79 CGGTGHLSRDCPNERK-----PKSCYNCGSTDH 106
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKR---KKPCFVCGSLEHGVRQCS---KAQDCFIC 228
P +R ++CYNCG H++ C + K + C+ CG H R C K + C+ C
Sbjct: 42 PSERKPKSCYNCGSTDHLSRECTNEAKAGADTRSCYNCGGTGHLSRDCPNERKPKSCYNC 101
Query: 229 KKGGHRAKDCPDKH 242
H +++CPD+H
Sbjct: 102 GSTDHLSRECPDRH 115
>gi|343426719|emb|CBQ70247.1| related to GIS2-Putative zinc finger protein, proposed to be
involved in the RAS/cAMP signaling pathway [Sporisorium
reilianum SRZ2]
Length = 178
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 66/153 (43%), Gaps = 22/153 (14%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC---------SKAQDCF 226
P G +CYNCG++GH++ C + K C+ C H R+C +C+
Sbjct: 21 PTAGNPSCYNCGQQGHISSQCGMEAQPKT-CYKCNETGHISRECPTNPAPVAGGPGGECY 79
Query: 227 ICKKGGHRAKDCPDKHKS---GFQNA-----QVCLKCGDSGHDMFSCRNSYSLDDLKEVQ 278
C + GH A+ CP S GF A + C CG GH C S + +
Sbjct: 80 KCGQHGHIARACPTAGPSTRGGFGGAPRAGGRSCYNCGGVGHLSREC-TSPAGAAAGGQR 138
Query: 279 CYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
CY C GH ++ P SC+RCG+ GH
Sbjct: 139 CYNCNENGH---ISRECPKPQTKSCYRCGEEGH 168
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 18/146 (12%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC---SKAQDCFICKKGGHRAKD 237
+TC+NCG+ GH A C +A C+ CG H QC ++ + C+ C + GH +++
Sbjct: 5 RTCFNCGQPGHNAAACPTAGNPS--CYNCGQQGHISSQCGMEAQPKTCYKCNETGHISRE 62
Query: 238 CPDKHK--SGFQNAQVCLKCGDSGHDMFSC-------RNSY-SLDDLKEVQCYICRCFGH 287
CP +G + C KCG GH +C R + CY C GH
Sbjct: 63 CPTNPAPVAGGPGGE-CYKCGQHGHIARACPTAGPSTRGGFGGAPRAGGRSCYNCGGVGH 121
Query: 288 LC--CVNISDAVPGEVSCFRCGQLGH 311
L C + + A G C+ C + GH
Sbjct: 122 LSRECTSPAGAAAGGQRCYNCNENGH 147
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 25/102 (24%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKK------------PCFVCGSLEHGVRQCSK-------AQ 223
CY CG+ GH+A C +A + C+ CG + H R+C+ Q
Sbjct: 78 CYKCGQHGHIARACPTAGPSTRGGFGGAPRAGGRSCYNCGGVGHLSRECTSPAGAAAGGQ 137
Query: 224 DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
C+ C + GH +++CP + C +CG+ GH +C
Sbjct: 138 RCYNCNENGHISRECPKPQT------KSCYRCGEEGHLSAAC 173
Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRS---AVKRKKPCFVCGSLEHGVRQCSKAQ--DCFICKK 230
P G ++CYNCG GH++ C S A + C+ C H R+C K Q C+ C +
Sbjct: 106 PRAGGRSCYNCGGVGHLSRECTSPAGAAAGGQRCYNCNENGHISRECPKPQTKSCYRCGE 165
Query: 231 GGHRAKDCPD 240
GH + CP
Sbjct: 166 EGHLSAACPQ 175
>gi|91179150|gb|ABE27759.1| vasa [Azumapecten farreri]
Length = 801
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRK---KPCFVCGSLEHGVRQCSKA--------QDCFICKKG 231
C+ CGEEGH A C + + CF CG H R+C K + CF C +
Sbjct: 198 CHKCGEEGHFARECPTGGGGGGGDRSCFKCGEQGHMSRECPKGGGGGGGGDRSCFKCGEQ 257
Query: 232 GHRAKDCPDKHKSGFQNA-QVCLKCGDSGHDMFSCRNS 268
GH +++CP G + C KCG+ GH C N+
Sbjct: 258 GHMSRECPSSGGGGGGGGDRGCFKCGEQGHFSRECPNA 295
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 13/80 (16%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRK----KPCFVCGSLEHGVRQCSKA---------QDCFI 227
++C+ CGE+GHM+ C + CF CG H R+C + + CF
Sbjct: 222 RSCFKCGEQGHMSRECPKGGGGGGGGDRSCFKCGEQGHMSRECPSSGGGGGGGGDRGCFK 281
Query: 228 CKKGGHRAKDCPDKHKSGFQ 247
C + GH +++CP+ KSG Q
Sbjct: 282 CGEQGHFSRECPNAEKSGIQ 301
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP-----CFVCGSLEHGVRQCSKA-------QDCFICKK 230
C+ CGE+GH A C + + C CG H R+C + CF C +
Sbjct: 170 CHKCGEDGHFARECPTGGGGRGGGGGGKCHKCGEEGHFARECPTGGGGGGGDRSCFKCGE 229
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
GH +++CP G + C KCG+ GH C +S
Sbjct: 230 QGHMSRECPKGGGGGGGGDRSCFKCGEQGHMSRECPSS 267
>gi|187608738|ref|NP_001120666.1| cellular nucleic acid-binding protein isoform 4 [Homo sapiens]
gi|291393356|ref|XP_002713210.1| PREDICTED: zinc finger protein 9 isoform 2 [Oryctolagus cuniculus]
gi|68359783|gb|AAY96755.1| cellular nucleic acid binding protein beta variant 2 [Homo sapiens]
Length = 172
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 63/153 (41%), Gaps = 36/153 (23%)
Query: 183 CYNCGEEGHMAVNCRSA----------------VKRKKP--CFVCGSLEHGVRQCSKAQD 224
C+ CG GH A C + V P C+ CG H + C +D
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 65
Query: 225 ---CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYI 281
C+ C +GGH AKDC + + + Q C CG GH C D E +CY
Sbjct: 66 VEACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYS 116
Query: 282 CRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C FGH+ D +V C+RCG+ GH +
Sbjct: 117 CGEFGHI----QKDCT--KVKCYRCGETGHVAI 143
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 18/111 (16%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKD 237
+ CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KD
Sbjct: 67 EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKD 126
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C C +CG++GH +C + EV CY C GHL
Sbjct: 127 C---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 162
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 84 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 140
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 141 VAINCS-------KTSEVNCYRCGESGH 161
>gi|195997645|ref|XP_002108691.1| hypothetical protein TRIADDRAFT_51887 [Trichoplax adhaerens]
gi|190589467|gb|EDV29489.1| hypothetical protein TRIADDRAFT_51887 [Trichoplax adhaerens]
Length = 361
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 77/175 (44%), Gaps = 27/175 (15%)
Query: 147 NGDEGVTTVEISDNIVLRKLLRGPRYFDPPDRGW-QTCYNCGEEGHMAVNCRSAVKRKKP 205
N D+ + IS V+ + + RYF+ + + C+ C E GH++ C +K+K
Sbjct: 95 NSDDNDVVLPISK--VMGTIGKKFRYFNNTNHVINRKCHICLELGHLSYQC--PMKKKMT 150
Query: 206 CFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCP-----DKHKSGFQNAQVCLKCGDSGH 260
C +CG + H + C Q C+ C + GHR K+CP DK K+ C +C GH
Sbjct: 151 CRICGEIGHKLNSCPN-QFCYKCDQQGHRGKECPNGLAKDKRKT-------CRRCFMRGH 202
Query: 261 DMFSCRNSYSLDDLKEVQCYICRCFGHL--CCVNISDAVPGEVSCFRCGQLGHTG 313
C + + Q Y FG + +A V C+ CG+ GH G
Sbjct: 203 VEKECPDRWR-------QYYATTKFGPPKKPPDELLNAQNPRVYCYNCGKKGHYG 250
>gi|7263180|gb|AAF44119.1| cellular nucleic acid binding protein mutant H128D [synthetic
construct]
Length = 178
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 55 CYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPRKEREQCCYNCGKPGHLARD 111
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ G D+ D +V+CY C GH V I+ +
Sbjct: 112 CE------HADEQKCYSCGEFG-DI--------QKDCTKVKCYRCGDTGH---VAINCSK 153
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 154 TSEVNCYRCGESGH 167
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 52/110 (47%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ K R++ C+ CG H R C A Q C+ C + G KDC
Sbjct: 74 ACYNCGRGGHIAKDCKEPRKEREQCCYNCGKPGHLARDCEHADEQKCYSCGEFGDIQKDC 133
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CGD+GH +C + EV CY C GHL
Sbjct: 134 ---------TKVKCYRCGDTGHVAINCSKT------SEVNCYRCGESGHL 168
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 16/110 (14%)
Query: 206 CFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFS 264
C+ CG H + C +D C+ C +GGH AKDC + K + Q C CG GH
Sbjct: 55 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPRK---EREQCCYNCGKPGHLARD 111
Query: 265 CRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C ++ E +CY C FG + D +V C+RCG GH +
Sbjct: 112 CEHA------DEQKCYSCGEFGDI----QKDCT--KVKCYRCGDTGHVAI 149
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 11/81 (13%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
Q CYNCG+ GH+A +C A ++K C+ CG + C+K + C+ C GH A +C
Sbjct: 97 QCCYNCGKPGHLARDCEHADEQK--CYSCGEFGDIQKDCTKVK-CYRCGDTGHVAINCS- 152
Query: 241 KHKSGFQNAQV-CLKCGDSGH 260
+ ++V C +CG+SGH
Sbjct: 153 ------KTSEVNCYRCGESGH 167
>gi|225710484|gb|ACO11088.1| DNA-binding protein HEXBP [Caligus rogercresseyi]
Length = 397
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDCPD 240
C+ CG+EGH + C +V CF CG + H R+C CF CK+ GH ++DCP+
Sbjct: 280 CFKCGKEGHFSRECTESVGGSN-CFKCGEVGHFSRECPTGGGDKCFNCKQEGHISRDCPE 338
Query: 241 KHKSGFQNAQVCLKCGDSGH 260
K C C ++GH
Sbjct: 339 KRNVS------CYNCNETGH 352
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--CFICKKGGHRAK 236
G C+ CGE GH + C + K CF C H R C + ++ C+ C + GH ++
Sbjct: 298 GGSNCFKCGEVGHFSRECPTGGGDK--CFNCKQEGHISRDCPEKRNVSCYNCNETGHMSR 355
Query: 237 DCP 239
+CP
Sbjct: 356 ECP 358
>gi|358057974|dbj|GAA96219.1| hypothetical protein E5Q_02883 [Mixia osmundae IAM 14324]
Length = 215
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 10/95 (10%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-----AQDCFICKK 230
P R + C+ CG++ H+A +C S VK CF C S +H + +CS+ + C+ C+
Sbjct: 5 PARRPRGCFRCGKDDHLAASCPSEVKL---CFNCASPDHSLAECSEERKPMSMTCYNCQG 61
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
GHRA DC + + + ++C CG GH +C
Sbjct: 62 QGHRAADCTEARVA--RPEKLCYTCGQGGHVASAC 94
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 18/87 (20%)
Query: 182 TCYNCGEEGHMAVNCRSA-----------VKRKKPCFVCGSLEHGVRQCSKAQD------ 224
TC+ CG++GH A +C +A R K C CG H +R C A D
Sbjct: 125 TCHRCGQDGHFARDCSAADPISPREPSARPPRTKTCHSCGGA-HLIRDCPTATDRPAAKT 183
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQV 251
C+ C GH +++C + ++A
Sbjct: 184 CYNCGLSGHLSRNCSQPSATTVESAPA 210
>gi|258569739|ref|XP_002543673.1| zinc finger CCHC domain-containing protein 13 [Uncinocarpus reesii
1704]
gi|237903943|gb|EEP78344.1| zinc finger CCHC domain-containing protein 13 [Uncinocarpus reesii
1704]
Length = 170
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 28/145 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKDCP 239
C+NCG+ H A +C K C+ CG R CS K + C+ C GH ++DCP
Sbjct: 8 CFNCGDSAHQARDC--PKKGSLVCYNCGG-----RDCSEPAKEKSCYRCGLTGHISRDCP 60
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDD-------------LKEVQCYICRCFG 286
+SG +Q C KCG GH +C + ++ + CY C +G
Sbjct: 61 QGGESGETRSQECYKCGQVGHIARNCSQNTGYNNSGYGAGSYGGGYGSRPQTCYSCGGYG 120
Query: 287 HLCCVNISDAVPGEVSCFRCGQLGH 311
H+ D G+ C+ CG++GH
Sbjct: 121 HM----ARDCTQGQ-KCYNCGEVGH 140
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 21/104 (20%)
Query: 181 QTCYNCGEEGHMAVNC-----------------RSAVKRKKPCFVCGSLEHGVRQCSKAQ 223
Q CY CG+ GH+A NC R + C+ CG H R C++ Q
Sbjct: 71 QECYKCGQVGHIARNCSQNTGYNNSGYGAGSYGGGYGSRPQTCYSCGGYGHMARDCTQGQ 130
Query: 224 DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
C+ C + GH +++C + K +VC KC GH +C N
Sbjct: 131 KCYNCGEVGHVSRECTTEGKG----ERVCYKCKQPGHVQAACPN 170
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 53/133 (39%), Gaps = 37/133 (27%)
Query: 181 QTCYNCGEEGHMAVNC----RSAVKRKKPCFVCGSLEHGVRQCS---------------- 220
++CY CG GH++ +C S R + C+ CG + H R CS
Sbjct: 44 KSCYRCGLTGHISRDCPQGGESGETRSQECYKCGQVGHIARNCSQNTGYNNSGYGAGSYG 103
Query: 221 -----KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLK 275
+ Q C+ C GH A+DC Q C CG+ GH C + +
Sbjct: 104 GGYGSRPQTCYSCGGYGHMARDCTQ--------GQKCYNCGEVGHVSREC----TTEGKG 151
Query: 276 EVQCYICRCFGHL 288
E CY C+ GH+
Sbjct: 152 ERVCYKCKQPGHV 164
>gi|170093301|ref|XP_001877872.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647731|gb|EDR11975.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 133
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAV------KRKKPCFVCGSLEHGVRQCSKAQD---------CF 226
TC+ C E+GH A NC A K C+ CGS H + +C K D CF
Sbjct: 17 TCFACREKGHAAKNCPKATTEDGKGKSVGICYRCGSTRHTLSRCKKPADTENPMPFASCF 76
Query: 227 ICKKGGHRAKDCP-DKHKSGFQNAQVCLKCGDSGH 260
+C GH A CP +K K + N C CGD+ H
Sbjct: 77 VCSGKGHLASACPQNKAKGVYPNGGCCKICGDTAH 111
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 225 CFICKKGGHRAKDCPDKHK--SGFQNAQVCLKCGDSGHDMFSCRNSYSLDD-LKEVQCYI 281
CF C++ GH AK+CP ++ +C +CG + H + C+ ++ + C++
Sbjct: 18 CFACREKGHAAKNCPKATTEDGKGKSVGICYRCGSTRHTLSRCKKPADTENPMPFASCFV 77
Query: 282 CRCFGHL---CCVNISDAV-PGEVSCFRCGQLGH 311
C GHL C N + V P C CG H
Sbjct: 78 CSGKGHLASACPQNKAKGVYPNGGCCKICGDTAH 111
>gi|403416646|emb|CCM03346.1| predicted protein [Fibroporia radiculosa]
Length = 641
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 57/142 (40%), Gaps = 17/142 (11%)
Query: 183 CYNCGEEG-HMAVNCRSAVKRKKPCFVCGSL-EHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C NCG EG H C + C CG+ EH R C ++ CF C GH KDCP+
Sbjct: 295 CKNCGAEGDHKTYECPVLI-----CLTCGARDEHSTRSCPISKTCFNCGMKGHINKDCPN 349
Query: 241 KHKSGFQNAQV---CLKCGDSGHDMFSCRNSYSL----DDLKEVQCYICRCFGHLCCVNI 293
+H SG +A C +CG H C + L DD + R +
Sbjct: 350 RH-SGRNSANYFNDCDRCGARSHTSDECPTLWRLYEYVDDTERQNILQTREAKQTLALGK 408
Query: 294 SDA--VPGEVSCFRCGQLGHTG 313
+ + C+ CG GH G
Sbjct: 409 GGEGYIASDEWCYNCGGCGHLG 430
>gi|326919350|ref|XP_003205944.1| PREDICTED: cellular nucleic acid-binding protein-like [Meleagris
gallopavo]
Length = 134
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 13/96 (13%)
Query: 168 RGPRYF--DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDC 225
RG +Y+ +P Q CYNCG+ GH+A +C A K+K C+ CG H + C+K + C
Sbjct: 38 RGGKYYCKEPKREREQCCYNCGKPGHLARDCDHADKQK--CYSCGEFGHIQKDCTKVK-C 94
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
+ C + GH A C + ++V C +CG SGH
Sbjct: 95 YRCGETGHVAISCS-------KTSEVNCYRCGKSGH 123
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 18/91 (19%)
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCY 280
+ Q C+ C K GH A+DC K Q C CG+ GH D +V+CY
Sbjct: 51 REQCCYNCGKPGHLARDCDHADK------QKCYSCGEFGHIQ---------KDCTKVKCY 95
Query: 281 ICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
C GH V IS + EV+C+RCG+ GH
Sbjct: 96 RCGETGH---VAISCSKTSEVNCYRCGKSGH 123
>gi|346716306|ref|NP_001231149.1| zinc finger CCHC domain-containing protein 9 [Sus scrofa]
Length = 270
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 29/173 (16%)
Query: 129 EDQSVIVRKEEQKVETADNGDEGVTTVEISDNIVL----------RKLLRGPRYFDPPDR 178
ED + + Q + NG+E + E+ I L R+L R +
Sbjct: 70 EDVNGFMEYLRQNSQMVHNGEEIADSQEVRQEIALALKKDSRREGRRLKR-----QAAKK 124
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD---------- 224
C++C + GH +C +A++ ++ C+ CGS EH + +C D
Sbjct: 125 NAMVCFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEIIKCKAQVDPALGEFPFAK 184
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
CF+C + GH ++ CPD K + + C CG H C S + D + V
Sbjct: 185 CFVCGEMGHLSRSCPDNPKGLYADGGCCRLCGSVEHFKKDCPESKNSDQMVTV 237
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C++ GH DCP ++ +C +CG + H++ C+ +L
Sbjct: 119 RQAAKKNAMVCFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEIIKCKAQVDPALG 178
Query: 273 DLKEVQCYICRCFGHL--CCVNISDAVPGEVSCFR-CGQLGH 311
+ +C++C GHL C + + + C R CG + H
Sbjct: 179 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGCCRLCGSVEH 220
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGH--LCCVNISDAVP 298
K ++ +NA VC C GH + C + ++ CY C H + C D
Sbjct: 118 KRQAAKKNAMVCFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEIIKCKAQVDPAL 177
Query: 299 GEVS---CFRCGQLGH 311
GE CF CG++GH
Sbjct: 178 GEFPFAKCFVCGEMGH 193
>gi|167380673|ref|XP_001735408.1| cellular nucleic acid binding protein [Entamoeba dispar SAW760]
gi|165902631|gb|EDR28401.1| cellular nucleic acid binding protein, putative [Entamoeba dispar
SAW760]
Length = 390
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 7/67 (10%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGG 232
++G C+ CGE GH++ +C +A ++ CFVCG H R C KA+ CFIC + G
Sbjct: 287 NKGTDCCFICGEPGHISKDCPNAERK---CFVCGKTGHKSRDCPKAKGNNRPCFICGEIG 343
Query: 233 HRAKDCP 239
H +DCP
Sbjct: 344 HLDRDCP 350
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 183 CYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCSKAQ-DCFICKKGGHRAKDCPD 240
C CGE GH + C ++ K CF+CG H + C A+ CF+C K GH+++DCP
Sbjct: 269 CIICGEIGHTSKGCPQNENKGTDCCFICGEPGHISKDCPNAERKCFVCGKTGHKSRDCPK 328
Query: 241 KHKSGFQNAQVCLKCGDSGH 260
N + C CG+ GH
Sbjct: 329 AK----GNNRPCFICGEIGH 344
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 16/88 (18%)
Query: 206 CFVCGSLEHGVRQCSKAQD-----CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C +CG + H + C + ++ CFIC + GH +KDCP+ + C CG +GH
Sbjct: 269 CIICGEIGHTSKGCPQNENKGTDCCFICGEPGHISKDCPNAERK-------CFVCGKTGH 321
Query: 261 DMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C + + C+IC GHL
Sbjct: 322 KSRDCPKAKGNNR----PCFICGEIGHL 345
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRC 284
C IC + GH +K CP G C CG+ GH C N+ E +C++C
Sbjct: 269 CIICGEIGHTSKGCPQNENKG---TDCCFICGEPGHISKDCPNA-------ERKCFVCGK 318
Query: 285 FGHLCCVNISDAVPGEVSCFRCGQLGH 311
GH + A CF CG++GH
Sbjct: 319 TGHKS-RDCPKAKGNNRPCFICGEIGH 344
>gi|338714530|ref|XP_003363102.1| PREDICTED: cellular nucleic acid-binding protein-like [Equus
caballus]
Length = 172
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 63/153 (41%), Gaps = 36/153 (23%)
Query: 183 CYNCGEEGHMAVNCRSA----------------VKRKKP--CFVCGSLEHGVRQCSKAQD 224
C+ CG GH A C + V P C+ CG H + C +D
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 65
Query: 225 ---CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYI 281
C+ C +GGH AKDC + + + Q C CG GH C D E +CY
Sbjct: 66 GKSCYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYS 116
Query: 282 CRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C FGH+ D +V C+RCG+ GH +
Sbjct: 117 CGEFGHI----QKDCT--KVKCYRCGETGHVAI 143
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 55/111 (49%), Gaps = 18/111 (16%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKD 237
++CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KD
Sbjct: 67 KSCYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKD 126
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C C +CG++GH +C + EV CY C GHL
Sbjct: 127 C---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 162
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 84 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 140
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 141 VAINCS-------KTSEVNCYRCGESGH 161
>gi|71416079|ref|XP_810083.1| poly-zinc finger protein 2 [Trypanosoma cruzi strain CL Brener]
gi|70874564|gb|EAN88232.1| poly-zinc finger protein 2, putative [Trypanosoma cruzi]
Length = 192
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSA--VKRKKPCFVCGSLEHGVRQCSKAQD---CFICKK 230
P Q CY CGEEGH++ +C + + ++ CF C H R+C + + C C
Sbjct: 66 PPEARQPCYRCGEEGHISRDCTNPRLPRSEQSCFHCHKTGHYARECPEVIENLKCNSCGV 125
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
GH A+ CP++ ++ + C +CG GH +C N+ +E CY+C GHL
Sbjct: 126 TGHIARRCPERIRTA-RAFYPCFRCGMQGHVARNCPNTRL--PYEEQLCYVCGEKGHL 180
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 63/161 (39%), Gaps = 35/161 (21%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-----KAQDCFICKKGGHRAK 236
CY CG GH + +C V CF CG H + C+ K CF C++ GHRA
Sbjct: 2 VCYRCGGVGHTSRDCSRPVNESL-CFRCGKPGHMSKDCASDIDVKNAPCFFCQQAGHRAN 60
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNI- 293
+CP + + Q C +CG+ GH C N E C+ C GH C +
Sbjct: 61 NCP---LAPPEARQPCYRCGEEGHISRDCTNPRL--PRSEQSCFHCHKTGHYARECPEVI 115
Query: 294 ------SDAVPGEVS---------------CFRCGQLGHTG 313
S V G ++ CFRCG GH
Sbjct: 116 ENLKCNSCGVTGHIARRCPERIRTARAFYPCFRCGMQGHVA 156
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-------AQDCFICK 229
R Q+C++C + GH A C ++ K C CG H R+C + CF C
Sbjct: 92 PRSEQSCFHCHKTGHYARECPEVIENLK-CNSCGVTGHIARRCPERIRTARAFYPCFRCG 150
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSL 271
GH A++CP+ Q+C CG+ GH C++ L
Sbjct: 151 MQGHVARNCPNTRLP--YEEQLCYVCGEKGHLARDCKSEAPL 190
>gi|407044490|gb|EKE42624.1| zinc finger protein, putative [Entamoeba nuttalli P19]
Length = 389
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 7/67 (10%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGG 232
++G C+ CGE GH++ +C +A ++ CFVCG H R C KA+ CFIC + G
Sbjct: 287 NKGSDCCFICGETGHISKDCPNAERK---CFVCGKTGHKSRDCPKAKGNNRPCFICGEIG 343
Query: 233 HRAKDCP 239
H +DCP
Sbjct: 344 HLDRDCP 350
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 183 CYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCSKAQ-DCFICKKGGHRAKDCPD 240
C CGE GH + +C ++ K CF+CG H + C A+ CF+C K GH+++DCP
Sbjct: 269 CIICGEIGHTSKDCPQNENKGSDCCFICGETGHISKDCPNAERKCFVCGKTGHKSRDCP- 327
Query: 241 KHKSGFQNAQVCLKCGDSGH 260
K K N + C CG+ GH
Sbjct: 328 KAKG---NNRPCFICGEIGH 344
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRC 284
C IC + GH +KDCP G + C CG++GH C N+ E +C++C
Sbjct: 269 CIICGEIGHTSKDCPQNENKG---SDCCFICGETGHISKDCPNA-------ERKCFVCGK 318
Query: 285 FGHLCCVNISDAVPGEVSCFRCGQLGH 311
GH + A CF CG++GH
Sbjct: 319 TGHK-SRDCPKAKGNNRPCFICGEIGH 344
>gi|16797820|gb|AAL29186.1|AF204398_1 poly-zinc finger protein 2 [Trypanosoma cruzi]
Length = 192
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSA--VKRKKPCFVCGSLEHGVRQCSKAQD---CFICKK 230
P Q CY CGEEGH++ +C + + K+ CF C H R+C + C C
Sbjct: 66 PPEARQPCYRCGEEGHISRDCTNPRLPRSKQSCFHCHKTGHYARECRIVIENLKCNSCGV 125
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
GH A+ CP++ ++ + C +CG GH +C N+ +E CY+C GHL
Sbjct: 126 TGHIARRCPERIRTA-RAFYPCFRCGMQGHVARNCPNTRL--PYEEQLCYVCGEKGHL 180
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 66/161 (40%), Gaps = 35/161 (21%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-----KAQDCFICKKGGHRAK 236
CY CG GH + +C V CF CG H + C+ K CF C++ GHRA
Sbjct: 2 VCYRCGGVGHTSRDCSRPVNESL-CFRCGKPGHMSKDCASDIDVKNAPCFFCQQAGHRAN 60
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNI 293
+CP + + Q C +CG+ GH C N L K+ C+ C GH C + I
Sbjct: 61 NCP---LAPPEARQPCYRCGEEGHISRDCTNP-RLPRSKQ-SCFHCHKTGHYARECRIVI 115
Query: 294 ------SDAVPGEVS---------------CFRCGQLGHTG 313
S V G ++ CFRCG GH
Sbjct: 116 ENLKCNSCGVTGHIARRCPERIRTARAFYPCFRCGMQGHVA 156
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-------AQDCFICK 229
R Q+C++C + GH A CR ++ K C CG H R+C + CF C
Sbjct: 92 PRSKQSCFHCHKTGHYARECRIVIENLK-CNSCGVTGHIARRCPERIRTARAFYPCFRCG 150
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSL 271
GH A++CP+ Q+C CG+ GH C++ L
Sbjct: 151 MQGHVARNCPNTRLP--YEEQLCYVCGEKGHLARDCKSEAPL 190
>gi|395333861|gb|EJF66238.1| hypothetical protein DICSQDRAFT_48600 [Dichomitus squalens LYAD-421
SS1]
Length = 197
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 69/172 (40%), Gaps = 48/172 (27%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC---------------- 219
P G TCYNCG EGH++ +C +A + K C+ CG H R+C
Sbjct: 20 PKAGTPTCYNCGLEGHVSKDC-TAETKAKTCYKCGQEGHISRECPDNQNANGGTSGGGSY 78
Query: 220 -------SKAQDCFICKKGGHRAKDCPDK-------------HKSGFQNAQVCLKCGDSG 259
S + +C+ C K GH A+ CP+ G + C CG G
Sbjct: 79 TAFSSSNSGSTECYRCGKVGHIARSCPEAPGGTSGGYGGGGYSNFGGGQQRTCYTCGGVG 138
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
H S D ++ +CY C FGH ++ P +C+ CG GH
Sbjct: 139 H--------LSRDCVQGSKCYNCSGFGH---ISKDCPQPQRRACYTCGSEGH 179
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 23/112 (20%)
Query: 173 FDPPDRGWQTCYNCGEEGHMAVNCRSA-----------------VKRKKPCFVCGSLEHG 215
F + G CY CG+ GH+A +C A +++ C+ CG + H
Sbjct: 81 FSSSNSGSTECYRCGKVGHIARSCPEAPGGTSGGYGGGGYSNFGGGQQRTCYTCGGVGHL 140
Query: 216 VRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
R C + C+ C GH +KDCP + + C CG GH C N
Sbjct: 141 SRDCVQGSKCYNCSGFGHISKDCPQPQR------RACYTCGSEGHISRDCPN 186
>gi|407741470|gb|AFU33891.1| gag protein [Human immunodeficiency virus 1]
Length = 1432
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F + + K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFFRENLAFQGKAREFSS 447
Query: 243 KSGFQNAQVCLKCGDSGHD 261
+ N+ K GD G D
Sbjct: 448 EQTRANSPTSRKLGDGGRD 466
Score = 40.0 bits (92), Expect = 1.3, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQRGNFKGQKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|67467476|ref|XP_649839.1| zinc finger protein [Entamoeba histolytica HM-1:IMSS]
gi|56466350|gb|EAL44453.1| zinc finger protein, putative [Entamoeba histolytica HM-1:IMSS]
gi|449701896|gb|EMD42631.1| zinc finger protein, putative [Entamoeba histolytica KU27]
Length = 389
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 7/67 (10%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGG 232
++G C+ CGE GH++ +C +A ++ CFVCG H R C KA+ CFIC + G
Sbjct: 287 NKGSDCCFICGETGHISKDCPNAERK---CFVCGKTGHKSRDCPKAKGNNRPCFICGEIG 343
Query: 233 HRAKDCP 239
H +DCP
Sbjct: 344 HLDRDCP 350
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 183 CYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCSKAQ-DCFICKKGGHRAKDCPD 240
C CG+ GH + +C ++ K CF+CG H + C A+ CF+C K GH+++DCP
Sbjct: 269 CIICGKIGHTSKDCPQNENKGSDCCFICGETGHISKDCPNAERKCFVCGKTGHKSRDCP- 327
Query: 241 KHKSGFQNAQVCLKCGDSGH 260
K K N + C CG+ GH
Sbjct: 328 KAKG---NNRPCFICGEIGH 344
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRC 284
C IC K GH +KDCP G + C CG++GH C N+ E +C++C
Sbjct: 269 CIICGKIGHTSKDCPQNENKG---SDCCFICGETGHISKDCPNA-------ERKCFVCGK 318
Query: 285 FGHLCCVNISDAVPGEVSCFRCGQLGH 311
GH + A CF CG++GH
Sbjct: 319 TGHK-SRDCPKAKGNNRPCFICGEIGH 344
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 16/88 (18%)
Query: 206 CFVCGSLEHGVRQCSKAQD-----CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C +CG + H + C + ++ CFIC + GH +KDCP+ + C CG +GH
Sbjct: 269 CIICGKIGHTSKDCPQNENKGSDCCFICGETGHISKDCPNAERK-------CFVCGKTGH 321
Query: 261 DMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C + + C+IC GHL
Sbjct: 322 KSRDCPKAKGNNR----PCFICGEIGHL 345
>gi|99907739|gb|ABF68760.1| CNBP mutant 36-163, partial [synthetic construct]
Length = 128
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 61/134 (45%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE+GH+A +C + + C+ C H R C + Q C+ C K GH A+D
Sbjct: 5 CYRCGEQGHIARDCE---QTEDACYNCHRSXHISRDCKEPKKEREQCCYNCGKAGHVARD 61
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C N Q C CG GH C +V+CY C GH V + +
Sbjct: 62 CD------HANEQKCYSCGGFGHFQKLC---------DKVKCYRCGEIGH---VAVQCSK 103
Query: 298 PGEVSCFRCGQLGH 311
EV+C+ CG+ GH
Sbjct: 104 ATEVNCYNCGKTGH 117
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 16/110 (14%)
Query: 206 CFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFS 264
C+ CG H R C + +D C+ C + H ++DC + K + Q C CG +GH
Sbjct: 5 CYRCGEQGHIARDCEQTEDACYNCHRSXHISRDCKEPKK---EREQCCYNCGKAGHVARD 61
Query: 265 CRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C D E +CY C FGH + +V C+RCG++GH +
Sbjct: 62 C------DHANEQKCYSCGGFGHF------QKLCDKVKCYRCGEIGHVAV 99
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKR----------------KKPCFVCGSLEHGVR 217
+P Q CYNCG+ GH+A +C A ++ K C+ CG + H
Sbjct: 40 EPKKEREQCCYNCGKAGHVARDCDHANEQKCYSCGGFGHFQKLCDKVKCYRCGEIGHVAV 99
Query: 218 QCSKAQD--CFICKKGGHRAKDCP 239
QCSKA + C+ C K GH A+DC
Sbjct: 100 QCSKATEVNCYNCGKTGHLARDCS 123
>gi|393215825|gb|EJD01316.1| hypothetical protein FOMMEDRAFT_147876 [Fomitiporia mediterranea
MF3/22]
Length = 591
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 60/145 (41%), Gaps = 23/145 (15%)
Query: 183 CYNCGEEG-HMAVNCRSAVKRKKPCFVCGSL-EHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C CG EG H +C V C CG+ EH RQC + CF C GH KDCP+
Sbjct: 210 CGQCGAEGDHRQADCPVVV-----CLTCGAHNEHSTRQCPIVKTCFSCGMKGHINKDCPN 264
Query: 241 KHKSGFQNAQV------CLKCGDSGHDMFSCRNSYSLDDL-----KEVQCYICRCFGHLC 289
K F + Q+ C +CG H C + + D ++V + R +L
Sbjct: 265 K----FMSRQMTDRYYDCSRCGSILHKTRECPTLWRMYDYMDDTDRDVTLKMRREKENLP 320
Query: 290 CVNISDAVPGE-VSCFRCGQLGHTG 313
+ GE C+ CG GH G
Sbjct: 321 VGQGGEGYIGEDYWCYNCGASGHLG 345
>gi|340057210|emb|CCC51552.1| putative universal minicircle sequence binding protein (UMSBP)
[Trypanosoma vivax Y486]
Length = 138
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 25/141 (17%)
Query: 178 RGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKD 237
RG ++CYNCG+ GH++ C A + + C+ C + GH ++D
Sbjct: 8 RGDRSCYNCGQPGHISRECPGARSGN----------------ADGRACYNCGQPGHISRD 51
Query: 238 CPDKHKSGFQNAQVCLKCGDSGH---DMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVN 292
CP + C CG GH D + R +Y + CY C+ GH+ C N
Sbjct: 52 CPGMRGGSSFGGRSCYNCGKVGHISRDCPTARGAYGGPQTRS--CYHCQQEGHIARDCPN 109
Query: 293 IS--DAVPGEVSCFRCGQLGH 311
AV G +C+ CGQ GH
Sbjct: 110 APADGAVRGGGACYNCGQPGH 130
>gi|58004789|gb|AAW62456.1| cellular nucleic acid binding protein mutant H128A [synthetic
construct]
Length = 178
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 63/134 (47%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 55 CYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPRKEREQCCYNCGKPGHLARD 111
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ G D +V+CY C GH V I+ +
Sbjct: 112 CE------HADEQKCYSCGEFGAIQ---------KDCTKVKCYRCGDTGH---VAINCSK 153
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 154 TSEVNCYRCGESGH 167
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 52/110 (47%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ K R++ C+ CG H R C A Q C+ C + G KDC
Sbjct: 74 ACYNCGRGGHIAKDCKEPRKEREQCCYNCGKPGHLARDCEHADEQKCYSCGEFGAIQKDC 133
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CGD+GH +C + EV CY C GHL
Sbjct: 134 ---------TKVKCYRCGDTGHVAINCSKT------SEVNCYRCGESGHL 168
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 16/110 (14%)
Query: 206 CFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFS 264
C+ CG H + C +D C+ C +GGH AKDC + K + Q C CG GH
Sbjct: 55 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPRK---EREQCCYNCGKPGHLARD 111
Query: 265 CRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
C ++ E +CY C FG + D +V C+RCG GH +
Sbjct: 112 CEHA------DEQKCYSCGEFGAI----QKDCT--KVKCYRCGDTGHVAI 149
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 11/81 (13%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
Q CYNCG+ GH+A +C A ++K C+ CG + C+K + C+ C GH A +C
Sbjct: 97 QCCYNCGKPGHLARDCEHADEQK--CYSCGEFGAIQKDCTKVK-CYRCGDTGHVAINCS- 152
Query: 241 KHKSGFQNAQV-CLKCGDSGH 260
+ ++V C +CG+SGH
Sbjct: 153 ------KTSEVNCYRCGESGH 167
>gi|224137012|ref|XP_002322472.1| predicted protein [Populus trichocarpa]
gi|222869468|gb|EEF06599.1| predicted protein [Populus trichocarpa]
Length = 278
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 10/115 (8%)
Query: 206 CFVCGSLEHGVRQCS------KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
CF+C + +H + C K + C +C+ GH K CP K+ + ++C CG++G
Sbjct: 78 CFICKAKDHIAKLCPQKDEWEKNKICLLCRHRGHSLKRCPKKNDETM-DQKLCYNCGETG 136
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
H + C K C+IC GHL C N P C CG + H
Sbjct: 137 HSLSQCPQPREDGGTKFANCFICNERGHLSKDCPKNTRGIYPKGGCCKLCGGVTH 191
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 11/96 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSA---VKRKKPCFVCGSLEHGVRQC--------SKAQDCFICK 229
+ C C GH C +K C+ CG H + QC +K +CFIC
Sbjct: 101 KICLLCRHRGHSLKRCPKKNDETMDQKLCYNCGETGHSLSQCPQPREDGGTKFANCFICN 160
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ GH +KDCP + + C CG H C
Sbjct: 161 ERGHLSKDCPKNTRGIYPKGGCCKLCGGVTHLARDC 196
Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK----RKKPCFVCGSLEHGVRQCSKAQD--------CFIC 228
+ CYNCGE GH C + + CF+C H + C K C +C
Sbjct: 127 KLCYNCGETGHSLSQCPQPREDGGTKFANCFICNERGHLSKDCPKNTRGIYPKGGCCKLC 186
Query: 229 KKGGHRAKDCPDKHKSG 245
H A+DCPDK K G
Sbjct: 187 GGVTHLARDCPDKGKRG 203
>gi|347828477|emb|CCD44174.1| hypothetical protein [Botryotinia fuckeliana]
Length = 503
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 14/97 (14%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-------DCFICKKGGHRA 235
C+NCGEEGH C K + C+ CG H +C+ C IC++ GHRA
Sbjct: 73 CFNCGEEGHSKAECTQPPKARS-CYNCGEEGHTKAECTNPAVAREFTGTCRICEQSGHRA 131
Query: 236 KDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
CP ++C C + GH + C+N ++
Sbjct: 132 SGCPSAP------PKLCNNCKEEGHSILECKNPRKIE 162
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 61/150 (40%), Gaps = 21/150 (14%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRS----AVKRKKPCFVCGSLEHGVRQCSKAQD----C 225
+P DRG C C E GH +C + + CF C + H VR C ++ C
Sbjct: 281 EPVDRGVPLCSRCNELGHTVKHCTEERVDGERVQVQCFNCSEIGHRVRDCPIPREDKFAC 340
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCF 285
CKK GH +K+CP+ + C C + GH FS R+ + C C
Sbjct: 341 RNCKKSGHSSKECPEPRSA---EGVECKNCNEIGH--FS-RDCPTGGGGDGGLCRNCNQP 394
Query: 286 GHLC--CVNISDAVPGEVSCFRCGQLGHTG 313
GH C N + C C + GHTG
Sbjct: 395 GHRAKDCTNERVMI-----CRNCDEEGHTG 419
>gi|57648428|gb|AAW55909.1| zinc finger protein 8 [Trypanosoma cruzi]
Length = 192
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSA--VKRKKPCFVCGSLEHGVRQCSKAQD---CFICKK 230
P Q CY CGEEGH++ +C + + ++ CF C H R+C + + C C
Sbjct: 66 PPEARQPCYRCGEEGHISRDCTNPRLPRSEQSCFHCHKAGHYARECPEVIENLKCNSCGV 125
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
GH A+ CP++ ++ + C +CG GH +C N+ +E CY+C GHL
Sbjct: 126 TGHIARRCPERIRTA-RAFYPCFRCGMQGHVARNCPNTRL--PYEEQLCYVCGEKGHL 180
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 60/139 (43%), Gaps = 15/139 (10%)
Query: 183 CYNCGEEGHMAVNCRSAVKRK-KPCFVCGSLEHGVRQCSKA-----QDCFICKKGGHRAK 236
C+ CG+ GHM+ +C S + K PCF C H C A Q C+ C + GH ++
Sbjct: 25 CFRCGKPGHMSKDCASDIDVKNAPCFFCQQAGHRANSCPLAPPEARQPCYRCGEEGHISR 84
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNIS 294
DC + ++ Q C C +GH C + ++ ++C C GH+ C
Sbjct: 85 DCTNPRLP--RSEQSCFHCHKAGHYAREC-----PEVIENLKCNSCGVTGHIARRCPERI 137
Query: 295 DAVPGEVSCFRCGQLGHTG 313
CFRCG GH
Sbjct: 138 RTARAFYPCFRCGMQGHVA 156
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-------AQDCFICK 229
R Q+C++C + GH A C ++ K C CG H R+C + CF C
Sbjct: 92 PRSEQSCFHCHKAGHYARECPEVIENLK-CNSCGVTGHIARRCPERIRTARAFYPCFRCG 150
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSL 271
GH A++CP+ Q+C CG+ GH C++ L
Sbjct: 151 MQGHVARNCPNTRLP--YEEQLCYVCGEKGHLARDCKSEAPL 190
>gi|403215016|emb|CCK69516.1| hypothetical protein KNAG_0C04130 [Kazachstania naganishii CBS
8797]
Length = 372
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 76/204 (37%), Gaps = 36/204 (17%)
Query: 127 EIEDQSVIVRKEEQKVETADNGDEGVTTVEI----SDNIVLRKLLRGPRYF-------DP 175
E+E + + ++ NG + I D VLR L RYF D
Sbjct: 7 EVESMDTLPFVTDTNPSSSSNGKPKLVAPSIEEVDGDPEVLRSLRGQGRYFGVEDGDKDS 66
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLE-HGVRQCSKAQDCFICKKGGHR 234
C NC + GH+ +C + C CGS++ H +QC KA C C + GH
Sbjct: 67 IKEAVPKCSNCSQRGHLKKHCTHVI-----CTYCGSMDDHYSKQCPKAIKCTNCNENGHY 121
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNIS 294
CP K K + C C H C + + L++ + + +
Sbjct: 122 RSQCPQKWKRIY-----CTLCNSKRHSRDRCPTIWRVYLLRDKKDRLKK----------- 165
Query: 295 DAVPGE-VSCFRCGQLGHTGLVSW 317
VP E V C+ CG GH G W
Sbjct: 166 --VPFEKVYCYNCGSQGHFGDDCW 187
>gi|343960683|dbj|BAK61931.1| cellular nucleic acid-binding protein [Pan troglodytes]
Length = 170
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 62/134 (46%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C + C+ CG H + C + Q C+ C K GH A+D
Sbjct: 47 CYRCGESGHLAKDCD---LQGDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 103
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 104 CD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSK 145
Query: 298 PGEVSCFRCGQLGH 311
EV+C RCG+ GH
Sbjct: 146 TSEVNCSRCGESGH 159
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 62/151 (41%), Gaps = 34/151 (22%)
Query: 183 CYNCGEEGHMAVNCRSA----------------VKRKKP--CFVCGSLEHGVRQCSKAQD 224
C+ CG GH A C + V P C+ CG H + C D
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQGD 65
Query: 225 -CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C +GGH AKDC + + + Q C CG GH C D E +CY C
Sbjct: 66 ACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCG 116
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
FGH+ D +V C+RCG+ GH +
Sbjct: 117 EFGHI----QKDCT--KVKCYRCGETGHVAI 141
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 82 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 138
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 139 VAINCS-------KTSEVNCSRCGESGH 159
>gi|443897220|dbj|GAC74561.1| vesicle coat complex AP-2, alpha subunit [Pseudozyma antarctica T-34]
Length = 1140
Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 46/122 (37%), Gaps = 16/122 (13%)
Query: 183 CYNCGEEGHMAVNCRSA-VKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAK 236
C+NC E GH + C + K C+ CG H C A+ C+ C GHRA+
Sbjct: 996 CFNCLEPGHESSACEAPRTADAKQCYGCGGKGHIRADCPTPASGAAKACYTCGDQGHRAR 1055
Query: 237 DCPDKHK---SGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLK-------EVQCYICRCFG 286
DCP K + C CG H C+ + + CY C G
Sbjct: 1056 DCPQNPKPPAAAESKPVTCRNCGQPNHFAKDCKAPAAPGTAQPKPKKSKLKSCYTCNQPG 1115
Query: 287 HL 288
H+
Sbjct: 1116 HI 1117
Score = 45.8 bits (107), Expect = 0.023, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 22/89 (24%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRS-----AVKRKKP--CFVCGSLEHGVRQCS------- 220
P + CY CG++GH A +C A KP C CG H + C
Sbjct: 1036 PASGAAKACYTCGDQGHRARDCPQNPKPPAAAESKPVTCRNCGQPNHFAKDCKAPAAPGT 1095
Query: 221 --------KAQDCFICKKGGHRAKDCPDK 241
K + C+ C + GH AK+CP +
Sbjct: 1096 AQPKPKKSKLKSCYTCNQPGHIAKECPQQ 1124
>gi|321469269|gb|EFX80250.1| putative germ-line specific RNA helicase vasa protein [Daphnia
pulex]
Length = 761
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 18/143 (12%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRK----KPCFVCGSLEHGVRQCSKA-------QDCFICK 229
+ CY CGEEGHM+ C ++ + C C H R C + C C+
Sbjct: 129 RACYKCGEEGHMSRECPNSNSGGGGGDRTCHKCQQPGHMARDCPTGGGGGGGDRTCHKCQ 188
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC 289
+ GH A+DCP G + C KC ++GH R+ + C C GH+
Sbjct: 189 QPGHMARDCP---TGGGGGDRACHKCQETGH---MARDCPTGGGGGPRTCNKCGDAGHM- 241
Query: 290 CVNISDAVPGEVSCFRCGQLGHT 312
G+ CF+C +LGH+
Sbjct: 242 ARECPSGGGGDTKCFKCYKLGHS 264
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKR-KKPCFVCGSLEHGVRQCSKA----QDCFICKKGGH 233
G + C+ C E GHMA +C + + C CG H R+C CF C K GH
Sbjct: 204 GDRACHKCQETGHMARDCPTGGGGGPRTCNKCGDAGHMARECPSGGGGDTKCFKCYKLGH 263
Query: 234 RAKDCPDKH 242
K+CPD +
Sbjct: 264 STKECPDPY 272
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRK-KPCFVCGSLEHGVRQCSK-----AQDCFICKKGGHR 234
+TC+ C + GHMA +C + + C C H R C + C C GH
Sbjct: 182 RTCHKCQQPGHMARDCPTGGGGGDRACHKCQETGHMARDCPTGGGGGPRTCNKCGDAGHM 241
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYS--LDDLKEVQCYI 281
A++CP SG C KC GH C + Y+ +D KE + Y+
Sbjct: 242 ARECP----SGGGGDTKCFKCYKLGHSTKECPDPYNKLTEDGKERERYV 286
>gi|342186041|emb|CCC95526.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 492
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 58/131 (44%), Gaps = 24/131 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C+ C ++GH C + C+ CG+ H ++C CF C GHR+ DC K
Sbjct: 80 CFQCHQKGHTMPTCP-----QTRCYNCGNFGHSSQRCLSRPLCFHCSAPGHRSTDCQLKT 134
Query: 243 KSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVS 302
+ +VC +C + GH+M C SL L C+ C GH ++ P E
Sbjct: 135 R-----GRVCYRCKEPGHEMADC----SLTAL----CFTCHQAGH-----VAARCP-EGL 175
Query: 303 CFRCGQLGHTG 313
C RC GHT
Sbjct: 176 CSRCNARGHTA 186
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 54/140 (38%), Gaps = 30/140 (21%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP--------CFVCGSLEHGVRQC---SKAQDCFICKKG 231
C CGE GH +C +A KR + C CGS H C +++ +CF C +
Sbjct: 27 CLVCGETGHSRDDCTNAKKRPRSGEEEEASVCRGCGSSRHSQSSCPVRARSMECFQCHQK 86
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCV 291
GH CP C CG+ GH C L C+ C GH
Sbjct: 87 GHTMPTCPQTR---------CYNCGNFGHSSQRC--------LSRPLCFHCSAPGHR-ST 128
Query: 292 NISDAVPGEVSCFRCGQLGH 311
+ G V C+RC + GH
Sbjct: 129 DCQLKTRGRV-CYRCKEPGH 147
>gi|339245201|ref|XP_003378526.1| zinc finger CCHC domain-containing protein 9 [Trichinella spiralis]
gi|316972556|gb|EFV56229.1| zinc finger CCHC domain-containing protein 9 [Trichinella spiralis]
Length = 275
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKK--PCFVCGSLEHGVRQC-SKAQD-----CFICKKGGHR 234
CY C ++GH NC +K CF CGSLEH ++ C SKA CF+C GH
Sbjct: 113 CYCCRKKGHTLANCERNNDTQKLGVCFKCGSLEHTLKNCKSKANGLPYAFCFVCNGHGHL 172
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
AK C + + N C KCG H + C
Sbjct: 173 AKSCKENPNGIYPNGGSCKKCGSIYHLVKDC 203
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRC 284
C+ C+K GH +C + + Q VC KCG H + +C++ + L C++C
Sbjct: 113 CYCCRKKGHTLANCERNNDT--QKLGVCFKCGSLEHTLKNCKS--KANGLPYAFCFVCNG 168
Query: 285 FGHL---CCVNISDAVPGEVSCFRCGQLGH 311
GHL C N + P SC +CG + H
Sbjct: 169 HGHLAKSCKENPNGIYPNGGSCKKCGSIYH 198
>gi|444729593|gb|ELW70004.1| Zinc finger CCHC domain-containing protein 9 [Tupaia chinensis]
Length = 270
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 14/110 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C +A++ + C+ CGS EH + +C D CF+
Sbjct: 128 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 187
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
C + GH ++ CPD K + + C CG H M C S + D + V
Sbjct: 188 CGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLMKDCPKSQNSDRMVTV 237
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C+K GH DCP ++ +C +CG + H++ C+ +L
Sbjct: 119 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 178
Query: 273 DLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+ +C++C GHL C N C CG + H
Sbjct: 179 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEH 220
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVP 298
K ++ +NA VC C GH + C + D+ CY C H C D
Sbjct: 118 KRQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPAL 177
Query: 299 GEVS---CFRCGQLGH 311
GE CF CG++GH
Sbjct: 178 GEFPFAKCFVCGEMGH 193
>gi|242807741|ref|XP_002485018.1| zinc knuckle domain protein (Byr3), putative [Talaromyces
stipitatus ATCC 10500]
gi|218715643|gb|EED15065.1| zinc knuckle domain protein (Byr3), putative [Talaromyces
stipitatus ATCC 10500]
Length = 181
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 29/154 (18%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCSKA---QDCFICKKGGHR 234
G + C+NCGE H A +C K+ P C+ CG H R+C++A + C+ C + GH
Sbjct: 6 GSRGCFNCGEPSHQARDC---PKKGTPTCYNCGGQGHVSRECTQAPKEKSCYRCGQTGHI 62
Query: 235 AKDC----PDKHKSGFQ-------NAQVCLKCGDSGHDMFSCRN------SYSLDDLKEV 277
++DC P + ++ Q C KCG GH +C + ++
Sbjct: 63 SRDCQQSGPANNGGNYRGGFSGGSGGQECYKCGQVGHIARNCSQGGGYGGGHGGFGGRQQ 122
Query: 278 QCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
CY C +GH+ D G+ C+ CG++GH
Sbjct: 123 TCYSCGGYGHM----ARDCTQGQ-KCYNCGEVGH 151
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 70/163 (42%), Gaps = 35/163 (21%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA----------- 222
D P +G TCYNCG +GH++ C A K +K C+ CG H R C ++
Sbjct: 22 DCPKKGTPTCYNCGGQGHVSRECTQAPK-EKSCYRCGQTGHISRDCQQSGPANNGGNYRG 80
Query: 223 --------QDCFICKKGGHRAKDCPDKHKSGFQNA------QVCLKCGDSGHDMFSCRNS 268
Q+C+ C + GH A++C G + Q C CG GH
Sbjct: 81 GFSGGSGGQECYKCGQVGHIARNCSQGGGYGGGHGGFGGRQQTCYSCGGYGH-------- 132
Query: 269 YSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
+ D + +CY C GH+ + + GE C++C Q GH
Sbjct: 133 MARDCTQGQKCYNCGEVGHV-SRDCTTEGNGERVCYKCKQPGH 174
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 14/97 (14%)
Query: 181 QTCYNCGEEGHMAVNC----------RSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKK 230
Q CY CG+ GH+A NC R++ C+ CG H R C++ Q C+ C +
Sbjct: 89 QECYKCGQVGHIARNCSQGGGYGGGHGGFGGRQQTCYSCGGYGHMARDCTQGQKCYNCGE 148
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
GH ++DC + +VC KC GH +C N
Sbjct: 149 VGHVSRDCTTE----GNGERVCYKCKQPGHVQSACPN 181
>gi|332079156|gb|AEE00158.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 448
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 10/81 (12%)
Query: 150 EGVTTVEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V S NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+
Sbjct: 365 EAMSQVTTSANIMMQKGNFKGPRRIV-------KCFNCGKEGHLARNCRAP--RKKGCWK 415
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 416 CGKEGHQMKDCTERQANFLGK 436
>gi|343416638|emb|CCD20307.1| hypothetical protein, conserved in T. vivax, (fragment)
[Trypanosoma vivax Y486]
Length = 241
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 55/129 (42%), Gaps = 24/129 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C+ C + GHM C + CF CG H + C+ CF C GH + +CP K
Sbjct: 78 CFQCHQNGHMMPMCP-----RTRCFNCGHFGHSSQLCASKSVCFHCSMPGHTSTECPRK- 131
Query: 243 KSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVS 302
++C +C + GHDM C S QC++ GHL A EV
Sbjct: 132 ----DMGRLCYRCKEPGHDMAKCPQS--------PQCHMWDQTGHL------VAQCPEVL 173
Query: 303 CFRCGQLGH 311
C RC Q GH
Sbjct: 174 CNRCHQKGH 182
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 14/109 (12%)
Query: 206 CFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQ--VCLKCGDSGHDMF 263
C C S H R C + C C + GH +DCP + K ++ +C CG S H
Sbjct: 9 CKNCFSTGHLRRDCPLIK-CAACSRLGHFKEDCPHRRKRPRPDSDIGICRSCGSSSHAQA 67
Query: 264 SCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHT 312
C + +K V+C+ C GH+ + CF CG GH+
Sbjct: 68 KC-----PERIKSVECFQCHQNGHM------MPMCPRTRCFNCGHFGHS 105
>gi|327297590|ref|XP_003233489.1| zinc knuckle domain-containing protein [Trichophyton rubrum CBS
118892]
gi|326464795|gb|EGD90248.1| zinc knuckle domain-containing protein [Trichophyton rubrum CBS
118892]
Length = 190
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 25/108 (23%)
Query: 181 QTCYNCGEEGHMAVNC---------------------RSAVKRKKPCFVCGSLEHGVRQC 219
Q CY CG+ GH+A NC R + C+ CG H R C
Sbjct: 87 QECYKCGQVGHIARNCSQQGGSGYGGGYGNSGSGSYSGGYGGRSQTCYSCGGYGHMARGC 146
Query: 220 SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
++ Q C+ C + GH ++DCP + K +VC KC +GH +C N
Sbjct: 147 TQGQKCYNCGEVGHVSRDCPTEAK----GERVCYKCKQAGHVQAACPN 190
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 70/176 (39%), Gaps = 52/176 (29%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA----------- 222
D P +G TCYNCG +GH++ C K K C+ CG H R+C +
Sbjct: 22 DCPKKGTPTCYNCGGQGHVSRECTQPPKEKS-CYRCGMTGHISRECPSSGSGDNNYSGGY 80
Query: 223 ------QDCFICKKGGHRAKDCPDKHKSGFQN-----------------AQVCLKCGDSG 259
Q+C+ C + GH A++C + SG+ +Q C CG G
Sbjct: 81 SGGSGGQECYKCGQVGHIARNCSQQGGSGYGGGYGNSGSGSYSGGYGGRSQTCYSCGGYG 140
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVP----GEVSCFRCGQLGH 311
H C + +CY C GH +S P GE C++C Q GH
Sbjct: 141 HMARGC--------TQGQKCYNCGEVGH-----VSRDCPTEAKGERVCYKCKQAGH 183
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 64/160 (40%), Gaps = 40/160 (25%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKDC 238
C+NCGE H A +C K+ P C+ CG H R+C+ K + C+ C GH +++C
Sbjct: 10 CFNCGESSHQARDC---PKKGTPTCYNCGGQGHVSRECTQPPKEKSCYRCGMTGHISREC 66
Query: 239 PDKHKSGFQN----------AQVCLKCGDSGHDMFSCRN-----------------SYSL 271
P SG N Q C KCG GH +C
Sbjct: 67 PSS-GSGDNNYSGGYSGGSGGQECYKCGQVGHIARNCSQQGGSGYGGGYGNSGSGSYSGG 125
Query: 272 DDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
+ CY C +GH+ G+ C+ CG++GH
Sbjct: 126 YGGRSQTCYSCGGYGHM----ARGCTQGQ-KCYNCGEVGH 160
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 40/109 (36%), Gaps = 33/109 (30%)
Query: 220 SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQC 279
S + CF C + H+A+DCP K C CG GH C KE C
Sbjct: 5 SSGRGCFNCGESSHQARDCPKK------GTPTCYNCGGQGHVSREC-----TQPPKEKSC 53
Query: 280 YICRCFGHLCCVNISDAVPGEVS-----------------CFRCGQLGH 311
Y C GH IS P S C++CGQ+GH
Sbjct: 54 YRCGMTGH-----ISRECPSSGSGDNNYSGGYSGGSGGQECYKCGQVGH 97
>gi|19335964|emb|CAC38430.2| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 1445
Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCF----ICK 229
+P +G C+NCG+EGH+A NCR+ RKK C+ CG H ++ C + I
Sbjct: 386 NPSRKGPIKCFNCGKEGHLARNCRAP--RKKGCWKCGQEGHQMKDCKNGRQANFFREILA 443
Query: 230 KGGHRAK 236
GGH A+
Sbjct: 444 SGGHEAR 450
Score = 44.7 bits (104), Expect = 0.053, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
CF C K GH A++C K G C KCG GH M C+N + +E+
Sbjct: 395 CFNCGKEGHLARNCRAPRKKG------CWKCGQEGHQMKDCKNGRQANFFREI 441
>gi|340378247|ref|XP_003387639.1| PREDICTED: zinc finger CCHC domain-containing protein 9-like
[Amphimedon queenslandica]
Length = 201
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA--------QDCFICKKGG 232
+ C+ C + GH +C++ CF CGS EH V+ C CFIC + G
Sbjct: 71 KVCFKCRQPGHHLEDCKNNNDELNICFKCGSTEHSVKSCKAVVPSGSYPFAQCFICGESG 130
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY 269
H ++ CPD + + N C CG H +C +
Sbjct: 131 HLSRSCPDNPRGLYPNGGGCKVCGSVEHFKANCPEKF 167
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRC 284
CF C++ GH +DC K+ +C KCG + H + SC+ QC+IC
Sbjct: 73 CFKCRQPGHHLEDC----KNNNDELNICFKCGSTEHSVKSCKAVVPSGSYPFAQCFICGE 128
Query: 285 FGHL---CCVNISDAVPGEVSCFRCGQLGH 311
GHL C N P C CG + H
Sbjct: 129 SGHLSRSCPDNPRGLYPNGGGCKVCGSVEH 158
>gi|21429778|gb|AAM50567.1| AT22983p [Drosophila melanogaster]
Length = 186
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRA 235
Q C+ C EEGH+A +CRS V R + CF CG+ H +C K CF+C G++A
Sbjct: 98 QRCFRCLEEGHIAAHCRSTVDRSQCCFRCGTAGHKA-ECPKEAKCFLCASRGNQA 151
>gi|196001349|ref|XP_002110542.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190586493|gb|EDV26546.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 209
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN---SYSLDDLKEVQCYI 281
CF C++ GH+ C K +SG + ++C KCG S H ++ C S D L +C+I
Sbjct: 64 CFKCRQPGHKVSKC--KAESGNSSEKICFKCGSSNHSLYQCTQYDQSRRDDPLPFAKCFI 121
Query: 282 CRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
C+ GHL C N P SC CG + H
Sbjct: 122 CQGVGHLSKSCPDNPRGLYPLGGSCKLCGSVEH 154
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 13/92 (14%)
Query: 182 TCYNCGEEGHMAVNCR--SAVKRKKPCFVCGSLEHGVRQCSKAQD-----------CFIC 228
C+ C + GH C+ S +K CF CGS H + QC++ CFIC
Sbjct: 63 VCFKCRQPGHKVSKCKAESGNSSEKICFKCGSSNHSLYQCTQYDQSRRDDPLPFAKCFIC 122
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
+ GH +K CPD + + C CG H
Sbjct: 123 QGVGHLSKSCPDNPRGLYPLGGSCKLCGSVEH 154
>gi|325183159|emb|CCA17617.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 461
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 68/179 (37%), Gaps = 49/179 (27%)
Query: 176 PDRGW------QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
PDR + C+NCG+ GH++ C + K KPC+ CG H C + C C
Sbjct: 183 PDRRYFVTDLSTKCFNCGQTGHLSNAC-TNTKLLKPCYFCGISGHNSYACPRTP-CGSCL 240
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC 289
+ GH C ++ N +V CG GH SC+ D+K ++C +C GH
Sbjct: 241 QIGHITSRCSNR-SIQLNNCKV---CGRIGHTEESCQ--LKSKDVKAIKCMVCMKTGHSH 294
Query: 290 C-------------------------------VNISDAVP----GEVSCFRCGQLGHTG 313
C + +SD +P V CF C +GH
Sbjct: 295 CTPLPQPSDRRLFCPNCAGNHRLKRCRNQREGIRLSDVIPSFSSSNVKCFLCNHMGHIA 353
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 55/146 (37%), Gaps = 19/146 (13%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS------KAQDCFICKKGGHRAK 236
C +C + GH+ C + + C VCG + H C KA C +C K GH +
Sbjct: 236 CGSCLQIGHITSRCSNRSIQLNNCKVCGRIGHTEESCQLKSKDVKAIKCMVCMKTGH-SH 294
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS---YSLDDL------KEVQCYICRCFGH 287
P S C C H + CRN L D+ V+C++C GH
Sbjct: 295 CTPLPQPS--DRRLFCPNCA-GNHRLKRCRNQREGIRLSDVIPSFSSSNVKCFLCNHMGH 351
Query: 288 LCCVNISDAVPGEVSCFRCGQLGHTG 313
+ + +CFRC GH
Sbjct: 352 IAAECSHRKSTRDGACFRCDDYGHMA 377
>gi|120843|sp|P24736.3|GAG_HV1U4 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains:
RecName: Full=Matrix protein p17; Short=MA; Contains:
RecName: Full=Capsid protein p24; Short=CA; Contains:
RecName: Full=Spacer peptide p2; Contains: RecName:
Full=Nucleocapsid protein p7; Short=NC; Contains:
RecName: Full=Spacer peptide p1; Contains: RecName:
Full=p6-gag
gi|328905|gb|AAA75018.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ R RGPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 361 EAMSQVQQTSIMMQRGNFRGPRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 410
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 411 GKEGHQMKDCTERQANFLGK 430
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G + + CF C K GH AK+C
Sbjct: 345 ACQGVGGPGHKARVLAEAMSQVQQTSIM--MQRGNFRGPRRIKCFNCGKEGHLAKNCRAP 402
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 403 RKKG------CWKCGKEGHQMKDC 420
>gi|396496524|ref|XP_003844764.1| hypothetical protein LEMA_P000720.1 [Leptosphaeria maculans JN3]
gi|312221345|emb|CBY01285.1| hypothetical protein LEMA_P000720.1 [Leptosphaeria maculans JN3]
Length = 622
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 67/166 (40%), Gaps = 35/166 (21%)
Query: 177 DRGWQTCYNCGEEGHMAVNC------RSAVKRKKPCFVCGSLEHGVRQCSK----AQDCF 226
DRG C NCGE GH+ +C R + + + C C + H R C+K C
Sbjct: 415 DRGVPLCGNCGELGHVRKHCKQEQPERQSHQPEITCVNCHEIGHRARDCNKERLNPHACR 474
Query: 227 ICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH--------DMFSCRNSYSLDDLK--- 275
CKK GH +KDCP+ + C KC +GH +CRN S + +
Sbjct: 475 NCKKDGHNSKDCPEPRSA---EGVECRKCMQTGHFSKDCPNVAARTCRNCDSTEHIAKDC 531
Query: 276 -------EVQCYICRCFGHLC--CVNISDAVPGEVSCFRCGQLGHT 312
+ QC C GH C D V C CG +GHT
Sbjct: 532 DQPKNPDKTQCRNCDLTGHFSRDCPKPRDY--SRVKCSNCGDMGHT 575
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 183 CYNCGEEGHMAVNCRSA-VKR--KKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDC 238
CYNCGE GH +C + V+R C CG H +R C +Q C +C + GHRA +C
Sbjct: 228 CYNCGEVGHNKADCTNPRVERAFTGTCNGCGVEGHTIRDC-PSQKCKLCDQPGHRALEC 285
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGHRAKD 237
C C + GH + +C + R C C S EH + C + ++ C C GH ++D
Sbjct: 497 CRKCMQTGHFSKDCPNVAART--CRNCDSTEHIAKDCDQPKNPDKTQCRNCDLTGHFSRD 554
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CP K + C CGD GH + C
Sbjct: 555 CP---KPRDYSRVKCSNCGDMGHTIKRC 579
Score = 37.7 bits (86), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 223 QDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
Q C +C + GH A+DCP+ G + C CG+ GH+ C N
Sbjct: 200 QTCRVCHQTGHFARDCPEAPAGGGLTGE-CYNCGEVGHNKADCTN 243
>gi|343420304|emb|CCD19151.1| hypothetical protein, conserved in T. vivax [Trypanosoma vivax
Y486]
Length = 605
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 52/131 (39%), Gaps = 24/131 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C+ C ++GHM C + CF CG +G C+ CF C GH + +C
Sbjct: 78 CFQCHQKGHMMPMCP-----QTRCFNCGHFGYGSELCTNKPVCFHCSMPGHTSTECLVNG 132
Query: 243 KSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVS 302
+ C + GHDM C S QCY+C GHL A EV
Sbjct: 133 MGRLR-----YSCEEPGHDMAKCPQS--------PQCYMCNQTGHLV------AQCPEVL 173
Query: 303 CFRCGQLGHTG 313
C RC Q GH
Sbjct: 174 CNRCHQKGHMA 184
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 209 CGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQ--VCLKCGDSGHDMFSCR 266
C S H R C + C C + GH +DCP + K ++ +C CG S H C
Sbjct: 12 CFSTGHLRRDCPLIK-CAACSRLGHFKEDCPHRRKRPRADSDIGICRSCGSSSHAQAKCP 70
Query: 267 NSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
+ +K V+C+ C GH+ + + CF CG G+
Sbjct: 71 -----ERIKSVECFQCHQKGHM------MPMCPQTRCFNCGHFGY 104
>gi|315044853|ref|XP_003171802.1| hypothetical protein MGYG_06345 [Arthroderma gypseum CBS 118893]
gi|311344145|gb|EFR03348.1| hypothetical protein MGYG_06345 [Arthroderma gypseum CBS 118893]
Length = 192
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 26/109 (23%)
Query: 181 QTCYNCGEEGHMAVNC----------------------RSAVKRKKPCFVCGSLEHGVRQ 218
Q CY CG+ GH+A NC S R + C+ CG H R
Sbjct: 88 QECYKCGQVGHIARNCSQQGGSGYGGGYGNSGSGSYGGGSYGGRSQTCYSCGGYGHMARD 147
Query: 219 CSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
C++ Q C+ C + GH ++DCP + K +VC KC +GH +C N
Sbjct: 148 CTQGQKCYNCGEVGHVSRDCPTEAK----GERVCYKCKQAGHVQAACPN 192
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 71/178 (39%), Gaps = 54/178 (30%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA----------- 222
D P +G TCYNCG +GH++ C K K C+ CG H R+C +
Sbjct: 22 DCPKKGTPTCYNCGGQGHVSRECTQPPKEKS-CYRCGMTGHISRECPSSGSGDNNYSGGG 80
Query: 223 -------QDCFICKKGGHRAKDCPDKHKSGFQN------------------AQVCLKCGD 257
Q+C+ C + GH A++C + SG+ +Q C CG
Sbjct: 81 YSGGSGGQECYKCGQVGHIARNCSQQGGSGYGGGYGNSGSGSYGGGSYGGRSQTCYSCGG 140
Query: 258 SGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVP----GEVSCFRCGQLGH 311
GH + D + +CY C GH +S P GE C++C Q GH
Sbjct: 141 YGH--------MARDCTQGQKCYNCGEVGH-----VSRDCPTEAKGERVCYKCKQAGH 185
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 65/162 (40%), Gaps = 42/162 (25%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKDC 238
C+NCGE H A +C K+ P C+ CG H R+C+ K + C+ C GH +++C
Sbjct: 10 CFNCGESSHQARDC---PKKGTPTCYNCGGQGHVSRECTQPPKEKSCYRCGMTGHISREC 66
Query: 239 PDKHKSGFQN-----------AQVCLKCGDSGHDMFSCRN------------------SY 269
P SG N Q C KCG GH +C
Sbjct: 67 PSS-GSGDNNYSGGGYSGGSGGQECYKCGQVGHIARNCSQQGGSGYGGGYGNSGSGSYGG 125
Query: 270 SLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
+ CY C +GH+ D G+ C+ CG++GH
Sbjct: 126 GSYGGRSQTCYSCGGYGHM----ARDCTQGQ-KCYNCGEVGH 162
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 40/110 (36%), Gaps = 34/110 (30%)
Query: 220 SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQC 279
S + CF C + H+A+DCP K C CG GH C KE C
Sbjct: 5 SSGRGCFNCGESSHQARDCPKK------GTPTCYNCGGQGHVSREC-----TQPPKEKSC 53
Query: 280 YICRCFGHLCCVNISDAVPGEVS------------------CFRCGQLGH 311
Y C GH IS P S C++CGQ+GH
Sbjct: 54 YRCGMTGH-----ISRECPSSGSGDNNYSGGGYSGGSGGQECYKCGQVGH 98
>gi|225555534|gb|EEH03826.1| zinc knuckle domain-containing protein [Ajellomyces capsulatus
G186AR]
Length = 184
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 25/108 (23%)
Query: 181 QTCYNCGEEGHMAVNCR---------------------SAVKRKKPCFVCGSLEHGVRQC 219
Q CY CG+ GH+A NC R++ C+ CG H R C
Sbjct: 81 QECYKCGQVGHIARNCSQSGGYGSGGYGGATGGGYSGGYGGGRQQTCYSCGGYGHMARDC 140
Query: 220 SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
++ Q C+ C + GH ++DCP + K +VC KC GH +C N
Sbjct: 141 TQGQKCYNCGEVGHVSRDCPTEAK----GERVCYKCKQPGHVQATCPN 184
>gi|148668646|gb|EDL00965.1| zinc finger, CCHC domain containing 9, isoform CRA_a [Mus musculus]
Length = 271
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 14/110 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C + ++ + C+ CGS EH + +C D CF+
Sbjct: 129 VCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPALGEFPFAKCFV 188
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
C + GH ++ CPD K + + C CG GH CR + + D + V
Sbjct: 189 CGEMGHLSRSCPDNTKGVYADGGSCKLCGSVGHFKKDCRENQNSDRIITV 238
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGH---LCCVNISDAV 297
K ++ +NA VC C GH + C D+ CY C H C N+ A+
Sbjct: 119 KRQAAKKNAMVCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPAL 178
Query: 298 PGEVS---CFRCGQLGH 311
GE CF CG++GH
Sbjct: 179 -GEFPFAKCFVCGEMGH 194
>gi|402224353|gb|EJU04416.1| hypothetical protein DACRYDRAFT_114745 [Dacryopinax sp. DJM-731
SS1]
Length = 356
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
Query: 225 CFICKKGGHRAKDCPD---------KHKSGFQNAQVCLKCGDSGHDMFSCRNS-YSLDDL 274
CF C++ GH +DCPD +K + +C +CG + H + CR DL
Sbjct: 190 CFACRQPGHSVRDCPDISGSAAPSNTNKVALKGEALCYRCGSTQHTLGRCRKPELPSGDL 249
Query: 275 KEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+C+IC GHL C N P +C CG++ H
Sbjct: 250 PFAKCFICGGTGHLAGQCGKNKHGVYPRGGNCKVCGEVTH 289
Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 44/112 (39%), Gaps = 23/112 (20%)
Query: 177 DRGWQT-CYNCGEEGHMAVNC-------------RSAVKRKKPCFVCGSLEHGVRQCSKA 222
DR QT C+ C + GH +C + A+K + C+ CGS +H + +C K
Sbjct: 183 DRQAQTICFACRQPGHSVRDCPDISGSAAPSNTNKVALKGEALCYRCGSTQHTLGRCRKP 242
Query: 223 Q---------DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ CFIC GH A C + C CG+ H C
Sbjct: 243 ELPSGDLPFAKCFICGGTGHLAGQCGKNKHGVYPRGGNCKVCGEVTHLAKDC 294
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 19/90 (21%)
Query: 178 RGWQTCYNCGEEGHMAVNCRSAVKRKKP--------CFVCGSLEHGVRQCSKAQ------ 223
+G CY CG H CR K + P CF+CG H QC K +
Sbjct: 221 KGEALCYRCGSTQHTLGRCR---KPELPSGDLPFAKCFICGGTGHLAGQCGKNKHGVYPR 277
Query: 224 --DCFICKKGGHRAKDCPDKHKSGFQNAQV 251
+C +C + H AKDCP + K +A V
Sbjct: 278 GGNCKVCGEVTHLAKDCPLRWKDNQGDALV 307
>gi|393220397|gb|EJD05883.1| hypothetical protein FOMMEDRAFT_79565 [Fomitiporia mediterranea
MF3/22]
Length = 158
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 42/96 (43%), Gaps = 23/96 (23%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK-----------------RKKPCFVCGSLEHGVRQCSKAQ 223
Q CY C + GH+A NC AV R K CF CG L H R C K
Sbjct: 69 QECYRCSKAGHIARNCPEAVGGGSGGGGGGYGGYNDNMRGKNCFTCGGLGHLSRDCVKGA 128
Query: 224 DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
C+ C GH ++DCP + +VC +CG G
Sbjct: 129 KCYNCSGYGHISRDCPKPQQ------RVCYQCGSEG 158
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 62/161 (38%), Gaps = 49/161 (30%)
Query: 187 GEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS------------------------KA 222
GEEGH++ +C K ++ C+ CG +H R C
Sbjct: 10 GEEGHVSRDCVGPPKSRE-CYSCGKTDHLARDCPDQPAERGGGYSSFSNNNSSNNNASSI 68
Query: 223 QDCFICKKGGHRAKDCPDK-------------HKSGFQNAQVCLKCGDSGHDMFSCRNSY 269
Q+C+ C K GH A++CP+ + + C CG GH
Sbjct: 69 QECYRCSKAGHIARNCPEAVGGGSGGGGGGYGGYNDNMRGKNCFTCGGLGH--------L 120
Query: 270 SLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLG 310
S D +K +CY C +GH ++ P + C++CG G
Sbjct: 121 SRDCVKGAKCYNCSGYGH---ISRDCPKPQQRVCYQCGSEG 158
>gi|431907878|gb|ELK11485.1| Zinc finger CCHC domain-containing protein 9 [Pteropus alecto]
Length = 271
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C +A++ + C+ CGS EH + +C D CF+
Sbjct: 129 VCFHCRQPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
C + GH ++ CPD K + + C CG H C S S D + V
Sbjct: 189 CGEMGHLSRACPDNPKGLYADGGSCRLCGSVEHFKKDCPQSQSSDRMVTV 238
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVP 298
K ++ +NA VC C GH + C + D+ CY C H C D
Sbjct: 119 KRQAAKKNAMVCFHCRQPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPAL 178
Query: 299 GEVS---CFRCGQLGH 311
GE CF CG++GH
Sbjct: 179 GEFPFAKCFVCGEMGH 194
>gi|6324074|ref|NP_014144.1| Gis2p [Saccharomyces cerevisiae S288c]
gi|1730843|sp|P53849.1|GIS2_YEAST RecName: Full=Zinc finger protein GIS2
gi|1255963|emb|CAA65489.1| unnamed protein product [Saccharomyces cerevisiae]
gi|1302303|emb|CAA96162.1| unnamed protein product [Saccharomyces cerevisiae]
gi|45269894|gb|AAS56328.1| YNL255C [Saccharomyces cerevisiae]
gi|151944292|gb|EDN62570.1| gig suppressor [Saccharomyces cerevisiae YJM789]
gi|190409228|gb|EDV12493.1| zinc-finger protein GIS2 [Saccharomyces cerevisiae RM11-1a]
gi|256272390|gb|EEU07373.1| Gis2p [Saccharomyces cerevisiae JAY291]
gi|285814410|tpg|DAA10304.1| TPA: Gis2p [Saccharomyces cerevisiae S288c]
gi|323303323|gb|EGA57119.1| Gis2p [Saccharomyces cerevisiae FostersB]
gi|323307479|gb|EGA60750.1| Gis2p [Saccharomyces cerevisiae FostersO]
gi|323335863|gb|EGA77141.1| Gis2p [Saccharomyces cerevisiae Vin13]
gi|349580694|dbj|GAA25853.1| K7_Gis2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392297096|gb|EIW08197.1| Gis2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 153
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 10/130 (7%)
Query: 183 CYNCGEEGHMAVNCRSA-VKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
CYNC + GH+ +C K C+ CG H +C+ Q CF C + GH +++CP+
Sbjct: 25 CYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECT-VQRCFNCNQTGHISRECPEP 83
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEV 301
K+ + C KCG H C D + ++CY C GH+ S +
Sbjct: 84 KKTSRFSKVSCYKCGGPNHMAKDCMKE---DGISGLKCYTCGQAGHM-----SRDCQNDR 135
Query: 302 SCFRCGQLGH 311
C+ C + GH
Sbjct: 136 LCYNCNETGH 145
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 17/89 (19%)
Query: 181 QTCYNCGEEGHMAVNC----RSAVKRKKPCFVCGSLEHGVRQCSK-----AQDCFICKKG 231
Q C+NC + GH++ C +++ K C+ CG H + C K C+ C +
Sbjct: 65 QRCFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISGLKCYTCGQA 124
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
GH ++DC QN ++C C ++GH
Sbjct: 125 GHMSRDC--------QNDRLCYNCNETGH 145
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 48/126 (38%), Gaps = 19/126 (15%)
Query: 203 KKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQ--------------- 247
+K C+VCG + H C + C+ C K GH DC F+
Sbjct: 3 QKACYVCGKIGHLAEDCDSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSEC 62
Query: 248 NAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVPGEVSCFR 305
Q C C +GH C +V CY C H+ C+ D + G + C+
Sbjct: 63 TVQRCFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMK-EDGISG-LKCYT 120
Query: 306 CGQLGH 311
CGQ GH
Sbjct: 121 CGQAGH 126
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 182 TCYNCGEEGHMAVNCR-----SAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAK 236
+CY CG HMA +C S +K C+ CG H R C + C+ C + GH +K
Sbjct: 93 SCYKCGGPNHMAKDCMKEDGISGLK----CYTCGQAGHMSRDCQNDRLCYNCNETGHISK 148
Query: 237 DCP 239
DCP
Sbjct: 149 DCP 151
>gi|322695117|gb|EFY86931.1| hypothetical protein MAC_07048 [Metarhizium acridum CQMa 102]
Length = 156
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 17/99 (17%)
Query: 183 CYNCGEEGHMAVNCR--------------SAVKRKKPCFVCGSLEHGVRQCSKAQDCFIC 228
CY CGE GH+A NC K C+ CG H R+C C+ C
Sbjct: 61 CYKCGEIGHIARNCSKAGGSYGGSFGGGYGGGGAGKTCYSCGGYGHMSRECVNGMKCYNC 120
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
+ GH ++DCP + G ++C KC +GH +C N
Sbjct: 121 GESGHYSRDCPKESSGG---EKICYKCQQAGHVQSACPN 156
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 63/149 (42%), Gaps = 28/149 (18%)
Query: 184 YNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC----------SKAQDCFICKKGGH 233
YNCG EGHM+ +C +K K C+ CG H R+C +++ +C+ C + GH
Sbjct: 10 YNCGGEGHMSRDCSEPMKENKSCYKCGQPGHISRECPLGGAGGASGAQSTECYKCGEIGH 69
Query: 234 RAKDCP----------DKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
A++C G + C CG GH C N ++CY C
Sbjct: 70 IARNCSKAGGSYGGSFGGGYGGGGAGKTCYSCGGYGHMSRECVNG--------MKCYNCG 121
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGHT 312
GH ++ GE C++C Q GH
Sbjct: 122 ESGHYSRDCPKESSGGEKICYKCQQAGHV 150
>gi|426257255|ref|XP_004022245.1| PREDICTED: cellular nucleic acid-binding protein-like [Ovis aries]
Length = 170
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 54/110 (49%), Gaps = 20/110 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKR-KKPCFVCGSLEHGVRQC--SKAQDCFICKKGGHRAKDCP 239
CYNCG+ GH+A +C + ++ C+ CG H R C + Q C+ C K GH KDC
Sbjct: 67 CYNCGKSGHIAKDCAEPKREGERCCYTCGRPGHLARDCDHQEEQKCYSCGKRGHIQKDC- 125
Query: 240 DKHKSGFQNAQV-CLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
QV C +CG+ GH +CR + EV CY C GHL
Sbjct: 126 ---------TQVKCYRCGEIGHVAINCRK------MSEVNCYRCGESGHL 160
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 65/160 (40%), Gaps = 37/160 (23%)
Query: 183 CYNCGEEGHMAVNCR------------------SAVKRKKPCFVCGSLEHGVRQCSKAQD 224
C+ CG GH A C S+ C+ CG H + C D
Sbjct: 6 CFKCGRIGHWARGCSRGGARGRGARGRGRGAQCSSTTLPVICYRCGESGHHAKDCDLLDD 65
Query: 225 -CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH-----------DMFSC-RNSYSL 271
C+ C K GH AKDC + + G + C CG GH +SC + +
Sbjct: 66 ICYNCGKSGHIAKDCAEPKREG---ERCCYTCGRPGHLARDCDHQEEQKCYSCGKRGHIQ 122
Query: 272 DDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
D +V+CY C GH V I+ EV+C+RCG+ GH
Sbjct: 123 KDCTQVKCYRCGEIGH---VAINCRKMSEVNCYRCGESGH 159
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--CFICKKGGHRAKDC 238
Q CY+CG+ GH+ +C + VK C+ CG + H C K + C+ C + GH A++C
Sbjct: 110 QKCYSCGKRGHIQKDC-TQVK----CYRCGEIGHVAINCRKMSEVNCYRCGESGHLAREC 164
Query: 239 P 239
P
Sbjct: 165 P 165
>gi|167379639|ref|XP_001735220.1| zinc finger protein cchc domain containing protein [Entamoeba
dispar SAW760]
gi|165902889|gb|EDR28598.1| zinc finger protein cchc domain containing protein, putative
[Entamoeba dispar SAW760]
Length = 164
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCSKAQD-------CFICKKGG 232
+TC+ C + GH NC K + C+ CGS +H +R C + + CF+C + G
Sbjct: 14 KTCFYCRQPGHCLKNCPKKAKGEDSICYNCGSHDHILRDCPEPRTGKLAFSTCFVCHQMG 73
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
H ++DCP+ K + C CGD H C N
Sbjct: 74 HISRDCPNNPKGIYPQGGGCRYCGDVNHFAKDCPN 108
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 7/94 (7%)
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCY 280
K + CF C++ GH K+CP K K +C CG H + C + L C+
Sbjct: 12 KDKTCFYCRQPGHCLKNCPKKAKG---EDSICYNCGSHDHILRDCPEPRT-GKLAFSTCF 67
Query: 281 ICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+C GH+ C N P C CG + H
Sbjct: 68 VCHQMGHISRDCPNNPKGIYPQGGGCRYCGDVNH 101
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 183 CYNCGEEGHMAVNC---RSAVKRKKPCFVCGSLEHGVRQCS--------KAQDCFICKKG 231
CYNCG H+ +C R+ CFVC + H R C + C C
Sbjct: 40 CYNCGSHDHILRDCPEPRTGKLAFSTCFVCHQMGHISRDCPNNPKGIYPQGGGCRYCGDV 99
Query: 232 GHRAKDCPDKHK 243
H AKDCP+K K
Sbjct: 100 NHFAKDCPNKRK 111
>gi|223994373|ref|XP_002286870.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220978185|gb|EED96511.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 132
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 21/107 (19%)
Query: 180 WQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--------------- 224
+ CY C ++GH A + K+ C+ CGS EH ++QC+K +
Sbjct: 26 YLICYRCRKQGHSAESSGQKKKQGLICYKCGSTEHRIQQCAKIKSFIKPGQKKIDFGKIG 85
Query: 225 ------CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
C++C K GH + CPD F C +CG+ GH C
Sbjct: 86 VLPFASCYVCNKSGHLSSYCPDSKNGVFPKGGTCNECGEPGHFAADC 132
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 20/103 (19%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYS-------------L 271
C+ C+K GH A+ K K G +C KCG + H + C S +
Sbjct: 29 CYRCRKQGHSAESSGQKKKQGL----ICYKCGSTEHRIQQCAKIKSFIKPGQKKIDFGKI 84
Query: 272 DDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
L CY+C GHL C + + P +C CG+ GH
Sbjct: 85 GVLPFASCYVCNKSGHLSSYCPDSKNGVFPKGGTCNECGEPGH 127
>gi|19335965|emb|CAC38421.2| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 1445
Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC--SKAQDCF--ICK 229
+P +G C+NCG+EGH+A NCR+ RKK C+ CG H ++ C K + F I
Sbjct: 386 NPGRKGPIKCFNCGKEGHLARNCRAP--RKKGCWKCGQEGHQMKDCRNGKQANFFREILA 443
Query: 230 KGGHRAK 236
GGH A+
Sbjct: 444 SGGHEAR 450
Score = 46.2 bits (108), Expect = 0.021, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
CF C K GH A++C K G C KCG GH M CRN + +E+
Sbjct: 395 CFNCGKEGHLARNCRAPRKKG------CWKCGQEGHQMKDCRNGKQANFFREI 441
>gi|358365333|dbj|GAA81955.1| zinc knuckle transcription factor [Aspergillus kawachii IFO 4308]
Length = 489
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 55/137 (40%), Gaps = 17/137 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHRAKD 237
C NC +GH A +C + C CGS +H +C + +C C + GH AKD
Sbjct: 300 CVNCSADGHRARDCPEPRRNVFACRNCGSEDHKASECPNPRSAENVECKRCNEMGHFAKD 359
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISD 295
CP K + C CG H C D+ V C C GH C D
Sbjct: 360 CPQKPP-----PRTCRNCGSEDHVAKECDKPR---DVSTVTCRNCDEVGHFSRDCPKKRD 411
Query: 296 AVPGEVSCFRCGQLGHT 312
V C CG++GHT
Sbjct: 412 Y--SRVKCNNCGEMGHT 426
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKDC 238
C NCG +GH A NC ++ CF CG H +C+K + C IC K GH A +C
Sbjct: 59 CRNCGSDGHFARNC-PEPRKDIACFNCGEDGHNKSECTKPRIFKGACRICNKEGHPAAEC 117
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
P+K VC C GH C+ + D
Sbjct: 118 PEKA------PDVCKNCKMEGHKTMDCKENRRFD 145
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 52/126 (41%), Gaps = 31/126 (24%)
Query: 176 PDRGWQTCYNCGEEGHMAVNC---RSA-----------------VKRKKP---CFVCGSL 212
P R C NCG E H A C RSA +K P C CGS
Sbjct: 316 PRRNVFACRNCGSEDHKASECPNPRSAENVECKRCNEMGHFAKDCPQKPPPRTCRNCGSE 375
Query: 213 EHGVRQCSKAQD-----CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
+H ++C K +D C C + GH ++DCP K + C CG+ GH + C
Sbjct: 376 DHVAKECDKPRDVSTVTCRNCDEVGHFSRDCPKKRD---YSRVKCNNCGEMGHTIKRCPT 432
Query: 268 SYSLDD 273
+ + +D
Sbjct: 433 ANATED 438
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-KAQD-CFICKKGGHRAKDC 238
C+NCGE+GH C K C +C H +C KA D C CK GH+ DC
Sbjct: 80 ACFNCGEDGHNKSECTKPRIFKGACRICNKEGHPAAECPEKAPDVCKNCKMEGHKTMDC 138
>gi|119196333|ref|XP_001248770.1| hypothetical protein CIMG_02541 [Coccidioides immitis RS]
Length = 300
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 15/109 (13%)
Query: 166 LLRGPRYF-DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA-- 222
++R P D P +G CYNCG +C K +K C+ CG H R C +A
Sbjct: 144 MMRAPFVARDCPKKGSVICYNCGGR-----DCNEPAK-EKSCYRCGLTGHISRDCPQAGE 197
Query: 223 ------QDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
Q+C+ C + GH +++CP +SG Q C KCG GH +C
Sbjct: 198 SGGARGQECYKCGQVGHISRECPQGGESGEARGQECYKCGQVGHISRNC 246
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 183 CYNCGEEGHMAVNCRSA-VKRKKP------CFVCGSLEHGVRQCSKAQDCFICKKGGHRA 235
C+ CG+ H R+ V R P C+ CG + + +K + C+ C GH +
Sbjct: 132 CFTCGDSAHQVNMMRAPFVARDCPKKGSVICYNCGGRD--CNEPAKEKSCYRCGLTGHIS 189
Query: 236 KDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
+DCP +SG Q C KCG GH C + + +CY C GH+
Sbjct: 190 RDCPQAGESGGARGQECYKCGQVGHISRECPQGGESGEARGQECYKCGQVGHI 242
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 37/124 (29%)
Query: 181 QTCYNCGEEGHMAVNC----RSAVKRKKPCFVCGSLEHGVRQC--------SKAQDCFIC 228
++CY CG GH++ +C S R + C+ CG + H R+C ++ Q+C+ C
Sbjct: 177 KSCYRCGLTGHISRDCPQAGESGGARGQECYKCGQVGHISRECPQGGESGEARGQECYKC 236
Query: 229 KKGGHRAKDCPD------------KHKSGFQNA-------------QVCLKCGDSGHDMF 263
+ GH +++C ++ G + +VC KC GH
Sbjct: 237 GQVGHISRNCGQYSGYNGGGYNAGSYRYGGETGHVSRDCTTEGKGERVCYKCKQPGHVQA 296
Query: 264 SCRN 267
+C N
Sbjct: 297 ACPN 300
>gi|254569552|ref|XP_002491886.1| Protein with seven cysteine-rich CCHC zinc-finger motifs, similar
to human CNBP [Komagataella pastoris GS115]
gi|238031683|emb|CAY69606.1| Protein with seven cysteine-rich CCHC zinc-finger motifs, similar
to human CNBP [Komagataella pastoris GS115]
gi|328351614|emb|CCA38013.1| Zinc finger protein GIS2 [Komagataella pastoris CBS 7435]
Length = 171
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 60/141 (42%), Gaps = 22/141 (15%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRA 235
+TC+ CGE GH+A NC+ + +K C+ C + H C + ++ C+ C + GH
Sbjct: 8 RTCFKCGEVGHLAENCQ---QEQKLCYNCRAPGHESNDCPEPKQTSSKQCYNCNETGHVQ 64
Query: 236 KDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQ-----CYICRCFGHLCC 290
+C K A C CG GH C NS S V CY C H
Sbjct: 65 SECEQPKK-----AAKCYSCGKLGHFSRHCPNSSSASSAGPVASSSTICYKCSGPNHF-- 117
Query: 291 VNISDAVPGEVSCFRCGQLGH 311
D G C+ CG+LGH
Sbjct: 118 --ARDCQAGSPKCYACGKLGH 136
Score = 40.4 bits (93), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 21/100 (21%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-------------S 220
+P + CYNC E GH+ C K K C+ CG L H R C S
Sbjct: 45 EPKQTSSKQCYNCNETGHVQSECEQPKKAAK-CYSCGKLGHFSRHCPNSSSASSAGPVAS 103
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
+ C+ C H A+DC ++G + C CG GH
Sbjct: 104 SSTICYKCSGPNHFARDC----QAG---SPKCYACGKLGH 136
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 14/88 (15%)
Query: 183 CYNCGEEGHMAVNC--RSAVKRKKP-------CFVCGSLEHGVRQC-SKAQDCFICKKGG 232
CY+CG+ GH + +C S+ P C+ C H R C + + C+ C K G
Sbjct: 76 CYSCGKLGHFSRHCPNSSSASSAGPVASSSTICYKCSGPNHFARDCQAGSPKCYACGKLG 135
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
H +KDC S + C CG+ GH
Sbjct: 136 HISKDCTVSGGS----TKACYNCGEQGH 159
>gi|145528175|ref|XP_001449887.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417476|emb|CAK82490.1| unnamed protein product [Paramecium tetraurelia]
Length = 298
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 91/198 (45%), Gaps = 27/198 (13%)
Query: 99 DVIIEDVKSSDKKRIRVRKKKKKEADKIEIEDQSVIVRKEEQKVETADNGDEGVTTVEIS 158
D +IE + + +K++ K ++ K+ I QS ++ +E+K ET D+ ++
Sbjct: 121 DYLIE-YELNGQKKMTSMKNLNEKISKLNI--QSKQIQNDEEKNETNDDN----LKQDLK 173
Query: 159 DNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
D + L RY+ ++ C+ C + GH C ++ C C S +H
Sbjct: 174 DQLELG----VNRYYQY--NPFEYCFRCKQSGHQERQC--TEQQTIQCNYCLSQKHVGDI 225
Query: 219 CSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC----RNSYSLDDL 274
CS CF C + GHR DC + K Q C+ CG + H C + + L D
Sbjct: 226 CSNV-SCFRCNQIGHRKNDCRTQLK-----LQQCINCGKNSHKESECGMLTQQIHKLKD- 278
Query: 275 KEVQCYICRCFGHLCCVN 292
+++C++CR +GH+ C N
Sbjct: 279 -QIECFVCRLYGHINCQN 295
>gi|238504168|ref|XP_002383316.1| zinc knuckle transcription factor (CnjB), putative [Aspergillus
flavus NRRL3357]
gi|220690787|gb|EED47136.1| zinc knuckle transcription factor (CnjB), putative [Aspergillus
flavus NRRL3357]
Length = 482
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 55/137 (40%), Gaps = 17/137 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHRAKD 237
C NC GH A +C + + C CGS EH +C + +C C + GH AKD
Sbjct: 297 CVNCSAVGHRARDCTEPRRDRFACRNCGSSEHKAAECPNPRSAEGVECKRCNEVGHFAKD 356
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISD 295
CP + C CG H C D+ V C C GH C D
Sbjct: 357 CPQAPAP-----RTCRNCGSEDHIARDCDKPR---DISTVTCRNCDEVGHFSRDCPKKKD 408
Query: 296 AVPGEVSCFRCGQLGHT 312
+V C CG++GHT
Sbjct: 409 W--SKVKCNNCGEMGHT 423
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKDC 238
C NCG +GH A NC ++ CF CG E G +C+K + C +C + GH A C
Sbjct: 58 CRNCGSDGHFARNCPEP-RKGMACFNCG--EEGKAECTKPRVFKGTCRVCNQEGHPASQC 114
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
P++ VC C GH C+ + D
Sbjct: 115 PERP------PDVCKNCKMEGHRTIDCKENRKFD 142
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGHRAKD 237
C C E GH A +C A + C CGS +H R C K +D C C + GH ++D
Sbjct: 344 CKRCNEVGHFAKDCPQAPAPRT-CRNCGSEDHIARDCDKPRDISTVTCRNCDEVGHFSRD 402
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
CP K + C CG+ GH + C ++ D
Sbjct: 403 CPKKKD---WSKVKCNNCGEMGHTVKRCPSAVVND 434
Score = 37.7 bits (86), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--CFICKKGG 232
P R C+NCGEEG C K C VC H QC + C CK G
Sbjct: 72 PEPRKGMACFNCGEEGK--AECTKPRVFKGTCRVCNQEGHPASQCPERPPDVCKNCKMEG 129
Query: 233 HRAKDCPDKHKSGFQN 248
HR DC + K N
Sbjct: 130 HRTIDCKENRKFDLNN 145
>gi|170778684|gb|ACB36742.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 10/81 (12%)
Query: 150 EGVTTVEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V S NI+++K R PR C+NCG+EGH+A NCR+A RKK C+
Sbjct: 365 EAMSQVTNSANIMMQKSSFRSPRKIV-------KCFNCGKEGHIARNCRAA--RKKGCWK 415
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 416 CGKEGHQMKDCTERQANFLGK 436
Score = 37.7 bits (86), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + + R K CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSANIMMQKSSFRSPRKIVKCFNCGKEGHIARNCRAAR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 KKG------CWKCGKEGHQMKDC 426
>gi|396477991|ref|XP_003840426.1| similar to zinc knuckle domain-containing protein [Leptosphaeria
maculans JN3]
gi|312216998|emb|CBX96947.1| similar to zinc knuckle domain-containing protein [Leptosphaeria
maculans JN3]
Length = 196
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 72/180 (40%), Gaps = 53/180 (29%)
Query: 171 RYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK--------- 221
R + P +G TCYNCGE+GH++ C S + +K C+ CG H R+C+K
Sbjct: 24 RAAECPTKGTPTCYNCGEKGHVSRECTSP-QAEKTCYRCGGTGHISRECTKDGGAQMGGR 82
Query: 222 -----AQDCFICKKGGHRAKDCPDKHKSGFQNAQ---------------------VCLKC 255
Q+C+ C + GH A++C G Q C C
Sbjct: 83 GGGSGGQECYKCGQQGHIARNCSQGGGYGGQQQGGYGGRGGYGGGQGGYGGARQTTCYSC 142
Query: 256 GDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVS----CFRCGQLGH 311
G GH S D + +CY C GHL S P E S C+RC Q GH
Sbjct: 143 GGFGH--------MSRDCTQGQKCYNCGEVGHL-----SRDCPQETSSERVCYRCKQPGH 189
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 29/112 (25%)
Query: 181 QTCYNCGEEGHMAVNC-------------------------RSAVKRKKPCFVCGSLEHG 215
Q CY CG++GH+A NC R+ C+ CG H
Sbjct: 89 QECYKCGQQGHIARNCSQGGGYGGQQQGGYGGRGGYGGGQGGYGGARQTTCYSCGGFGHM 148
Query: 216 VRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
R C++ Q C+ C + GH ++DCP + S +VC +C GH +C N
Sbjct: 149 SRDCTQGQKCYNCGEVGHLSRDCPQETSS----ERVCYRCKQPGHVQSACPN 196
>gi|296178353|dbj|BAJ07808.1| putative vasa protein [Oxycomanthus japonicus]
Length = 851
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKA------QDCFIC 228
G ++CY CGE+GH++ +C SA C CG H R+C + C C
Sbjct: 191 GGRSCYKCGEDGHISRDCPSAGGGGGGGGRGCHKCGEEGHFARECPSGGGGGGGRACHKC 250
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ GH A++CP G + C KCG+ GH C
Sbjct: 251 GEEGHFARECPSGGGGGGGGGRACRKCGEEGHFAREC 287
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 52/129 (40%), Gaps = 28/129 (21%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRK----KPCFVCGSLEHGVRQCSKAQD------CFICKK 230
+ C+ CGEEGH A C S + C CG H R+C CF C K
Sbjct: 245 RACHKCGEEGHFARECPSGGGGGGGGGRACRKCGEEGHFARECPSGGGGGGGRGCFKCGK 304
Query: 231 GGHRAKDCPDK---------------HKSG--FQNAQVCLKCGDSGHDMFSCRN-SYSLD 272
GH+A+DC ++ + SG ++ C KCG+ GH C N S +
Sbjct: 305 DGHQARDCTEEGSSGGRSGGFRGGFGNSSGGDGKSDTACRKCGEEGHFARECPNPSAGGE 364
Query: 273 DLKEVQCYI 281
D Y+
Sbjct: 365 DRPAASTYV 373
Score = 37.4 bits (85), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYI 281
+ C+ C + GH ++DCP G + C KCG+ GH C + + C+
Sbjct: 192 GRSCYKCGEDGHISRDCPSAGGGGGGGGRGCHKCGEEGHFARECPSGGGGGGGR--ACHK 249
Query: 282 CRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
C GH C G +C +CG+ GH
Sbjct: 250 CGEEGHFARECPSGGGGGGGGGRACRKCGEEGH 282
>gi|448086305|ref|XP_004196068.1| Piso0_005509 [Millerozyma farinosa CBS 7064]
gi|359377490|emb|CCE85873.1| Piso0_005509 [Millerozyma farinosa CBS 7064]
Length = 178
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 67/172 (38%), Gaps = 53/172 (30%)
Query: 181 QTCYNCGEEGHMA----------VNCRSA-----------VKRKKPCFVCGSLEHGVRQC 219
+TCY CGE GH+A NCR A +K C+ CG L H +C
Sbjct: 7 RTCYKCGEVGHLADNCQQQERLCYNCREAGHESNDCPQPKQASQKQCYSCGDLGHLQGEC 66
Query: 220 ---SKAQDCFICKKGGHRAKDC---------PDKHKSG-FQNAQVCLKCGDSGHDMFSCR 266
S+ C+ C + GH +K C P K F A C KCG H C+
Sbjct: 67 PTQSQGSKCYNCGQFGHISKQCSSASGQAAVPKKANGARFPKAATCYKCGGPNHFARDCQ 126
Query: 267 NSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVS-------CFRCGQLGH 311
V+CY C GH IS P S C++CGQ+GH
Sbjct: 127 AGL-------VKCYACGKTGH-----ISKECPAAASGDSLAKACYQCGQVGH 166
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 46/109 (42%), Gaps = 16/109 (14%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSA--------------VKRKKPCFVCGSLEHGVRQCS 220
P CYNCG+ GH++ C SA + C+ CG H R C
Sbjct: 67 PTQSQGSKCYNCGQFGHISKQCSSASGQAAVPKKANGARFPKAATCYKCGGPNHFARDCQ 126
Query: 221 KAQ-DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
C+ C K GH +K+CP SG A+ C +CG GH C N+
Sbjct: 127 AGLVKCYACGKTGHISKECPAA-ASGDSLAKACYQCGQVGHISKECENA 174
>gi|336268999|ref|XP_003349261.1| hypothetical protein SMAC_05545 [Sordaria macrospora k-hell]
gi|380089834|emb|CCC12367.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 436
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 56/136 (41%), Gaps = 18/136 (13%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHRAKD 237
C+NC E GH +C K C CG H V C++ + +C C + GH +KD
Sbjct: 261 CFNCDEVGHRIRDCPIPRVDKFACKNCGQNGHKVADCTEPRSAENVECRKCNETGHFSKD 320
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISD 295
CP G C CG GH C ++D+ VQC C GH C D
Sbjct: 321 CPKTGPRG------CRNCGQEGHMSKECTEPKNMDN---VQCRNCDEMGHFSKECPKPRD 371
Query: 296 AVPGEVSCFRCGQLGH 311
V C C ++GH
Sbjct: 372 IT--RVKCSNCQEMGH 385
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKK-PCFVCGSLEHGVRQCSKAQD-----CFI 227
D P G + C NCG+EGHM+ C C C + H ++C K +D C
Sbjct: 320 DCPKTGPRGCRNCGQEGHMSKECTEPKNMDNVQCRNCDEMGHFSKECPKPRDITRVKCSN 379
Query: 228 CKKGGHRAKDCP----DKHKSGFQNAQVCLKCGDSG 259
C++ GH CP D+ +G N Q GD+
Sbjct: 380 CQEMGHYKSKCPNPLVDEDAAGGFNTQGFGNAGDNA 415
>gi|327294357|ref|XP_003231874.1| zinc knuckle transcription factor [Trichophyton rubrum CBS 118892]
gi|326465819|gb|EGD91272.1| zinc knuckle transcription factor [Trichophyton rubrum CBS 118892]
Length = 471
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKD 237
TC NCG+ GH A C K CF CG H C + C IC+K GH A +
Sbjct: 52 TCRNCGQAGHFARECPEPRKPSGACFNCGQEGHNKSDCPNPRVFTGTCRICEKEGHPAAE 111
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
CPD+ +C C GH C + L+
Sbjct: 112 CPDRP------PDICKNCKGEGHKTMECTENRKLE 140
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 71/167 (42%), Gaps = 34/167 (20%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCR---SAVKR-KKPCFVCGSLEHGVRQCSKAQ-DCFICK 229
P DR C NCG+ GH+ +C+ S V+R + C C H R C +A+ D F C+
Sbjct: 260 PLDRQIPKCSNCGKMGHIMKSCKEELSVVERVEVKCVNCKQPGHRARDCKEARVDRFACR 319
Query: 230 K---GGHRAKDCPDKHKSGFQNAQVCLKCGDSGH---------DMFSCRNSYSLD----- 272
GGHR+ +C + + C +C + GH +CRN S D
Sbjct: 320 NCGYGGHRSNECTEPRSA---EGVECKRCNEVGHFANDCPQGGGSRACRNCGSEDHIARD 376
Query: 273 -----DLKEVQCYICRCFGHLC--CVNISDAVPGEVSCFRCGQLGHT 312
++ V C C GH C D +V C CG++GHT
Sbjct: 377 CDQPRNMATVTCRNCEEMGHFSRDCTKKKDW--SKVKCSCCGEMGHT 421
>gi|82568572|dbj|BAE48529.1| gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 881
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C+NCG EGH+A NCR+ RKK C+ CG H ++ C++ Q F + + K
Sbjct: 390 CFNCGREGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFFRENLAFQGKAGELSS 447
Query: 243 KSGFQNAQVCLKCGDSGHDMF 263
+ N+ K GD G D F
Sbjct: 448 EQTRANSPTSRKLGDGGRDNF 468
>gi|383858908|ref|XP_003704941.1| PREDICTED: uncharacterized protein LOC100880872 [Megachile
rotundata]
Length = 430
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 10/89 (11%)
Query: 182 TCYNCGEEGHMAVNC---RSAVKRKKPCFVCGSLEHGVRQCSKAQ-------DCFICKKG 231
C++C + GH +C +S CF CGS EH +C A+ CFIC++
Sbjct: 295 VCFHCRKSGHNLSDCPELQSEQAGTGICFKCGSTEHTHFECKVAKPTEFRYATCFICREQ 354
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
GH AK CPD K + C CGD H
Sbjct: 355 GHIAKQCPDNPKGVYPQGGCCKICGDVTH 383
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQ----VCLKCGDSGHDMFSCRNSYSLDDLKEVQCY 280
CF C+K GH DCP+ Q+ Q +C KCG + H F C+ + + + C+
Sbjct: 296 CFHCRKSGHNLSDCPE-----LQSEQAGTGICFKCGSTEHTHFECKVAKPT-EFRYATCF 349
Query: 281 ICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
ICR GH+ C N P C CG + H
Sbjct: 350 ICREQGHIAKQCPDNPKGVYPQGGCCKICGDVTH 383
Score = 37.4 bits (85), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 39/104 (37%), Gaps = 13/104 (12%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVK---RKKPCFVCGSLEHGVRQCSKAQD--------CFI 227
G C+ CG H C+ A R CF+C H +QC C I
Sbjct: 318 GTGICFKCGSTEHTHFECKVAKPTEFRYATCFICREQGHIAKQCPDNPKGVYPQGGCCKI 377
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSL 271
C H KDCPD K +N ++ D+ S N++ L
Sbjct: 378 CGDVTHLKKDCPDLIKEKEENTITVNTIANT--DIESLENNFVL 419
>gi|328834534|gb|AEB52933.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 12/81 (14%)
Query: 150 EGVTTVEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V+ S NI+++K RGPR C+NCG+EGH+A NCR+ RKK C+
Sbjct: 365 EAMSQVQ-STNIMMQKSNFRGPRRIK--------CFNCGKEGHLARNCRAP--RKKGCWK 413
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ +
Sbjct: 414 CGKEGHQMKDCTERQANFLGR 434
>gi|300176386|emb|CBK23697.2| unnamed protein product [Blastocystis hominis]
Length = 221
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 56/129 (43%), Gaps = 23/129 (17%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C C + GH+A NC R + G+ R+ C+ C + GH A+DC
Sbjct: 108 CRACHKPGHIARNCPERPPRAE--RREGARPRRFRRFVPYNTCYRCLQPGHLARDC---- 161
Query: 243 KSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVS 302
QN VC +C GH C+N E CY C+ GH IS A P +
Sbjct: 162 ----QNEIVCSRCEQPGHKARECKN--------EPVCYRCKQSGH-----ISSACPNPIV 204
Query: 303 CFRCGQLGH 311
C++CGQ GH
Sbjct: 205 CYKCGQPGH 213
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 180 WQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCP 239
+ TCY C + GH+A +C++ + C C H R+C C+ CK+ GH + CP
Sbjct: 145 YNTCYRCLQPGHLARDCQNEIV----CSRCEQPGHKARECKNEPVCYRCKQSGHISSACP 200
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSC 265
N VC KCG GH C
Sbjct: 201 --------NPIVCYKCGQPGHKRSEC 218
>gi|409684246|gb|AFV34170.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ CYNCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CYNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K C+ C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQQTNIM--MQKGIFKGPKRIKCYNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|145518073|ref|XP_001444914.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412347|emb|CAK77517.1| unnamed protein product [Paramecium tetraurelia]
Length = 243
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP--CFVCGSLEHGVRQCSKAQD-------CFICKKGG 232
C C + GH A +CR V+ C+ CGS +H ++ C K + CF+CK+ G
Sbjct: 128 VCLVCKKVGHTAQHCRENVQPTTDVICYNCGSQKHTLKDCQKPKSGSLKFATCFVCKEAG 187
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
H ++DCP K + C C + H +C
Sbjct: 188 HISRDCPKNPKGLYAYGGGCYICSSTHHTQANC 220
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 16/96 (16%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQ-----VCLKCGDSGHDMFSCRNSYSLDDLKEVQC 279
C +CKK GH A+ C +N Q +C CG H + C+ S LK C
Sbjct: 129 CLVCKKVGHTAQHC-------RENVQPTTDVICYNCGSQKHTLKDCQKPKS-GSLKFATC 180
Query: 280 YICRCFGHL---CCVNISDAVPGEVSCFRCGQLGHT 312
++C+ GH+ C N C+ C HT
Sbjct: 181 FVCKEAGHISRDCPKNPKGLYAYGGGCYICSSTHHT 216
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 11/73 (15%)
Query: 183 CYNCGEEGHMAVNC---RSAVKRKKPCFVCGSLEHGVRQCSKAQD--------CFICKKG 231
CYNCG + H +C +S + CFVC H R C K C+IC
Sbjct: 154 CYNCGSQKHTLKDCQKPKSGSLKFATCFVCKEAGHISRDCPKNPKGLYAYGGGCYICSST 213
Query: 232 GHRAKDCPDKHKS 244
H +CP K+
Sbjct: 214 HHTQANCPQNPKN 226
>gi|281331900|emb|CAY83110.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 1428
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E +++++ ++ ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 360 EAMSSLQNANIMMQRGNXRGPKRI--------KCFNCGKEGHLARNCRAP--RKKGCWKC 409
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 410 GKEGHQMKDCNERQANFL 427
Score = 40.8 bits (94), Expect = 0.89, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 372 MQRGNXRGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 419
>gi|171694371|ref|XP_001912110.1| hypothetical protein [Podospora anserina S mat+]
gi|170947134|emb|CAP73939.1| unnamed protein product [Podospora anserina S mat+]
Length = 145
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 17/100 (17%)
Query: 183 CYNCGEEGHMAVNCRSAVK--------------RKKPCFVCGSLEHGVRQCSKAQDCFIC 228
CY CGE GH+A NC+ +K C+ CG + H R C C+ C
Sbjct: 48 CYKCGEVGHIARNCQKGGNSYGGGYNSGYGGNFNQKTCYSCGGMGHLSRDCVNGNKCYNC 107
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
GH +++CP + G ++C KC SGH C NS
Sbjct: 108 GVSGHLSRECPKESTGG---EKICYKCQQSGHVQSQCPNS 144
>gi|408398051|gb|EKJ77187.1| hypothetical protein FPSE_02637 [Fusarium pseudograminearum CS3096]
Length = 435
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 54/138 (39%), Gaps = 18/138 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHRAK 236
+CYNCG +GH +C K C CG H V C + +C C + GH AK
Sbjct: 271 SCYNCGADGHRVRDCPEPRIDKNACKNCGKSGHKVADCEEPPNPANVECRKCSEVGHFAK 330
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNIS 294
DCP + C CG GH C D+ V C C GH C
Sbjct: 331 DCPQG------GGRACRNCGQEGHMAKECDQPR---DMSTVTCRNCEQQGHYSKECPLPR 381
Query: 295 DAVPGEVSCFRCGQLGHT 312
D +V C C + GHT
Sbjct: 382 DW--SKVQCSNCQEYGHT 397
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 206 CFVCGSLEHGVRQCSKAQD--CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMF 263
CF CG + H +C Q+ C CKK GH KDCP+ VC CG+ GH
Sbjct: 53 CFGCGEIGHRRAECPNPQEMACRYCKKEGHMRKDCPEA------PPMVCENCGEEGHFRK 106
Query: 264 SCRNSYSLD 272
C ++
Sbjct: 107 HCEKPRKIN 115
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 12/99 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFIC 228
+PP+ C C E GH A +C R C CG H ++C + +D C C
Sbjct: 310 EPPNPANVECRKCSEVGHFAKDCPQGGGRA--CRNCGQEGHMAKECDQPRDMSTVTCRNC 367
Query: 229 KKGGHRAKDCP-DKHKSGFQNAQVCLKCGDSGHDMFSCR 266
++ GH +K+CP + S Q C C + GH C+
Sbjct: 368 EQQGHYSKECPLPRDWSKVQ----CSNCQEYGHTKVRCK 402
>gi|380479291|emb|CCF43107.1| hypothetical protein CH063_12905 [Colletotrichum higginsianum]
Length = 221
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQC--SKAQDCFICKKGGHR 234
+ C+NCG+ GH +C +KP C CG H R+C + A C +C + GH
Sbjct: 45 RACFNCGQSGHSKADCPEP---RKPFDGTCRGCGQEGHTRRECPDTPAMTCRVCGEEGHI 101
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
+DCP K VC C + GHD+ C+ +D
Sbjct: 102 RRDCPQK------PPDVCRNCHEEGHDVVDCKAPRKID 133
>gi|326475301|gb|EGD99310.1| Zinc knuckle transcription factor (CnjB) [Trichophyton tonsurans
CBS 112818]
Length = 494
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKD 237
TC NCG+ GH A C K CF CG H C + C +C+K GH A +
Sbjct: 52 TCRNCGQAGHFARECPEPRKPSGACFNCGQEGHNKSDCPNPRVFTGTCRVCEKEGHPAAE 111
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
CPD+ +C C GH C + L+
Sbjct: 112 CPDRP------PDICKNCKGEGHKTMECTENRKLE 140
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 69/167 (41%), Gaps = 34/167 (20%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCR---SAVKR-KKPCFVCGSLEHGVRQCSKAQ----DCF 226
P DR C NCG+ GH+ +C+ S V+R + C C H R C +A+ C
Sbjct: 281 PFDRQIPKCSNCGKMGHIMKSCKEELSVVERVEVKCVNCKQPGHRARDCKEARVDRFACR 340
Query: 227 ICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH---------DMFSCRNSYSLD----- 272
C KGGHR+ D+ + C +C + GH +CRN S D
Sbjct: 341 NCGKGGHRSN---DRTEPRSAEGVECKRCNEVGHFAKDCPQGGGSRACRNCGSEDHIARD 397
Query: 273 -----DLKEVQCYICRCFGHLC--CVNISDAVPGEVSCFRCGQLGHT 312
++ V C C GH C D +V C CG++GHT
Sbjct: 398 CDQPRNMANVTCRNCEEMGHFSRDCTKKKDW--SKVKCSCCGEMGHT 442
>gi|118485064|gb|ABK94395.1| unknown [Populus trichocarpa]
Length = 278
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 10/115 (8%)
Query: 206 CFVCGSLEHGVRQCS------KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
CF+C + +H + C K + C +C+ GH K CP K+ + ++C CG++G
Sbjct: 78 CFICKAKDHIAKLCPQKDEWEKNKICLLCRHRGHSLKRCPKKNDETM-DQKLCYNCGETG 136
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
H + C K C+IC GHL C N P C CG + H
Sbjct: 137 HSLSQCPQPREDGGTKFANCFICNERGHLSKDCPKNNRGIYPKGGCCKLCGGVTH 191
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSA---VKRKKPCFVCGSLEHGVRQC--------SKAQDCFICK 229
+ C C GH C +K C+ CG H + QC +K +CFIC
Sbjct: 101 KICLLCRHRGHSLKRCPKKNDETMDQKLCYNCGETGHSLSQCPQPREDGGTKFANCFICN 160
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ GH +KDCP ++ + C CG H C
Sbjct: 161 ERGHLSKDCPKNNRGIYPKGGCCKLCGGVTHLARDC 196
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK----RKKPCFVCGSLEHGVRQCSKAQD--------CFIC 228
+ CYNCGE GH C + + CF+C H + C K C +C
Sbjct: 127 KLCYNCGETGHSLSQCPQPREDGGTKFANCFICNERGHLSKDCPKNNRGIYPKGGCCKLC 186
Query: 229 KKGGHRAKDCPDKHKSG 245
H A+DCPDK K G
Sbjct: 187 GGVTHLARDCPDKGKRG 203
>gi|429249296|gb|AFZ77692.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ + NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+
Sbjct: 365 EAMSQAQQHTNIMMQKGIFKGPKRIK--------CFNCGKEGHLAKNCRAP--RKKGCWK 414
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 415 CGKEGHQMKDCTERQANFLGK 435
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G+ + K CF C K GH AK+C K G C KCG GH M C
Sbjct: 378 MQKGIFKGPKRIKCFNCGKEGHLAKNCRAPRKKG------CWKCGKEGHQMKDC 425
>gi|85099515|ref|XP_960800.1| hypothetical protein NCU08933 [Neurospora crassa OR74A]
gi|28922325|gb|EAA31564.1| predicted protein [Neurospora crassa OR74A]
gi|28950135|emb|CAD70993.1| conserved hypothetical protein [Neurospora crassa]
Length = 449
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 56/136 (41%), Gaps = 17/136 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHRAKD 237
C+NC E GH +C K C CG H C++ + +C C + GH +KD
Sbjct: 266 CFNCEEVGHRIRDCPIPRVDKFACKNCGQSGHRASDCTEPRSAEGVECRKCNEMGHFSKD 325
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISD 295
CP + C CG GH C ++D+ VQC C FGH C D
Sbjct: 326 CPQG-----GGPRGCRNCGQEGHMAKECTEPKNMDN---VQCRNCDEFGHFSKECPKPRD 377
Query: 296 AVPGEVSCFRCGQLGH 311
V C C Q+GH
Sbjct: 378 IT--RVKCSNCQQMGH 391
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 52/137 (37%), Gaps = 30/137 (21%)
Query: 178 RGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKD 237
RG C NCGE GH+ +C E G + CF C++ GHR +D
Sbjct: 234 RGIPKCGNCGELGHIRKSC---------------PEEGAEKEELVIKCFNCEEVGHRIRD 278
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
CP F C CG SGH C S + V+C C GH S
Sbjct: 279 CPIPRVDKF----ACKNCGQSGHRASDCTEPRSAEG---VECRKCNEMGHF-----SKDC 326
Query: 298 P---GEVSCFRCGQLGH 311
P G C CGQ GH
Sbjct: 327 PQGGGPRGCRNCGQEGH 343
Score = 37.7 bits (86), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKK-PCFVCGSLEHGVRQCSKAQD-----CFIC 228
P G + C NCG+EGHMA C C C H ++C K +D C C
Sbjct: 327 PQGGGPRGCRNCGQEGHMAKECTEPKNMDNVQCRNCDEFGHFSKECPKPRDITRVKCSNC 386
Query: 229 KKGGHRAKDCPD 240
++ GH CP+
Sbjct: 387 QQMGHYKSKCPN 398
>gi|227058023|gb|ACP18962.1| gag protein [Human immunodeficiency virus 1]
Length = 502
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 366 EAMSQVNSTNVLIQRSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 415
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 416 GKEGHQMKDCTERQANFLGK 435
>gi|145229969|ref|XP_001389293.1| zinc knuckle transcription factor (CnjB) [Aspergillus niger CBS
513.88]
gi|134055407|emb|CAK37116.1| unnamed protein product [Aspergillus niger]
Length = 481
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKDC 238
C NCG +GH A NC ++ CF CG H +C+K + C IC K GH A +C
Sbjct: 59 CRNCGSDGHFARNC-PEPRKDMACFNCGEDGHNKSECTKPRVFKGACRICNKEGHPAAEC 117
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
P+K VC C GH C+ + D
Sbjct: 118 PEK------GPDVCKNCKMEGHKTMDCKENRRFD 145
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 54/137 (39%), Gaps = 17/137 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHRAKD 237
C NC +GH A +C + C CG+ +H +C + +C C + GH AKD
Sbjct: 300 CVNCSADGHRARDCPEPRRNVFACRNCGAEDHKASECPNPRSAENVECKRCNEMGHFAKD 359
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISD 295
CP + C CG H C D+ V C C GH C D
Sbjct: 360 CPQAPP-----PRTCRNCGSEDHIAKDCDKPR---DVSTVTCRNCDEVGHFSRDCPKKRD 411
Query: 296 AVPGEVSCFRCGQLGHT 312
V C CG++GHT
Sbjct: 412 Y--SRVKCNNCGEMGHT 426
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGHRAKD 237
C C E GH A +C A + C CGS +H + C K +D C C + GH ++D
Sbjct: 347 CKRCNEMGHFAKDCPQAPPPRT-CRNCGSEDHIAKDCDKPRDVSTVTCRNCDEVGHFSRD 405
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKE 276
CP K + C CG+ GH + C + + +D +
Sbjct: 406 CPKKRD---YSRVKCNNCGEMGHTIKRCPTANAAEDAPQ 441
>gi|56266772|gb|AAV85016.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
EG++ V+ + NI++ R +RG + C+NCG+EGH+A NCR+ RKK C+
Sbjct: 365 EGMSQVQNTTNIMMQRSNIRGQKRIK--------CFNCGKEGHLARNCRAP--RKKGCWK 414
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 415 CGKEGHQMKNCTERQANFLGK 435
>gi|18844727|dbj|BAB85450.1| gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 54.7 bits (130), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCF----ICKKGG 232
DR C+NCG EGH+A NCR+ RKK C+ CG H ++ C++ Q F + + G
Sbjct: 384 DRKKIKCFNCGREGHLARNCRAP--RKKGCWKCGREGHQMKDCTERQANFFRENLAFQQG 441
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHD 261
K ++ ++ N+ K GD G D
Sbjct: 442 KAGKFSSEQTRA---NSPTSRKLGDGGRD 467
Score = 38.5 bits (88), Expect = 4.4, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C + GH A++C K G C KCG GH M C
Sbjct: 377 MQRGNFKDRKKIKCFNCGREGHLARNCRAPRKKG------CWKCGREGHQMKDC 424
>gi|227057985|gb|ACP18949.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQQTNIMMQRGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|46137541|ref|XP_390462.1| hypothetical protein FG10286.1 [Gibberella zeae PH-1]
Length = 185
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 68/161 (42%), Gaps = 34/161 (21%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC------SKAQDCFI 227
D P +G CYNCG EGHM+ +C +K K C+ CG H R C +A +C+
Sbjct: 28 DCPTKGPAKCYNCGGEGHMSRDCTEPMKDNKSCYKCGQPGHISRDCPMSGGSGQATECYK 87
Query: 228 CKKG-----GHRAKDCPDKHKSGFQN------------AQVCLKCGDSGHDMFSCRNSYS 270
GH A++C +KS + N + C CG GH C N
Sbjct: 88 ASSNCRLLIGHIARNC---NKSSYGNNYGGGFQQQGGAGKTCYSCGGFGHMSRECVNG-- 142
Query: 271 LDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
++CY C GH ++ GE C++C Q GH
Sbjct: 143 ------MKCYNCGESGHYSRDCPKESAGGEKICYKCQQPGH 177
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 62/150 (41%), Gaps = 31/150 (20%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA----QDCFICKKGGHRAKD 237
CY+CG H A +C K C+ CG H R C++ + C+ C + GH ++D
Sbjct: 15 ACYSCGSTAHQARDC--PTKGPAKCYNCGGEGHMSRDCTEPMKDNKSCYKCGQPGHISRD 72
Query: 238 CPDKHKSGFQNAQVCLKCGDS-----GHDMFSCRNSYSLDDLKEVQ---------CYICR 283
CP SG A C K + GH +C S ++ CY C
Sbjct: 73 CPMSGGSG--QATECYKASSNCRLLIGHIARNCNKSSYGNNYGGGFQQQGGAGKTCYSCG 130
Query: 284 CFGHLC--CVNISDAVPGEVSCFRCGQLGH 311
FGH+ CVN + C+ CG+ GH
Sbjct: 131 GFGHMSRECVN-------GMKCYNCGESGH 153
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 190 GHMAVNCRSA-------------VKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAK 236
GH+A NC + K C+ CG H R+C C+ C + GH ++
Sbjct: 97 GHIARNCNKSSYGNNYGGGFQQQGGAGKTCYSCGGFGHMSRECVNGMKCYNCGESGHYSR 156
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
DCP + G ++C KC GH C
Sbjct: 157 DCPKESAGG---EKICYKCQQPGHVQSQC 182
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGHRA 235
+TCY+CG GHM+ C + +K C+ CG H R C K C+ C++ GH
Sbjct: 124 KTCYSCGGFGHMSRECVNGMK----CYNCGESGHYSRDCPKESAGGEKICYKCQQPGHVQ 179
Query: 236 KDCP 239
CP
Sbjct: 180 SQCP 183
>gi|395511351|ref|XP_003759923.1| PREDICTED: zinc finger CCHC domain-containing protein 9
[Sarcophilus harrisii]
Length = 262
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 14/114 (12%)
Query: 178 RGWQTCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD--------- 224
R Q CY+C + GH +C + ++ + C+ CGS EH + +C D
Sbjct: 116 RNSQVCYHCRKPGHGIADCPAVLESQDIGTGICYRCGSTEHEITKCKAKVDPAMGEFPFA 175
Query: 225 -CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
CFIC + GH ++ CPD K + C CG H C + + D++ V
Sbjct: 176 KCFICGEMGHLSRSCPDNPKGLYAEGGGCRLCGSVEHFKKDCPENQNSDNMVTV 229
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLDDLKEVQC 279
+Q C+ C+K GH DCP +S +C +CG + H++ C+ ++ + +C
Sbjct: 118 SQVCYHCRKPGHGIADCPAVLESQDIGTGICYRCGSTEHEITKCKAKVDPAMGEFPFAKC 177
Query: 280 YICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+IC GHL C N C CG + H
Sbjct: 178 FICGEMGHLSRSCPDNPKGLYAEGGGCRLCGSVEH 212
>gi|429249200|gb|AFZ77644.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPRRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + + CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQHTNIM--MQKGIFKGPRRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|326480350|gb|EGE04360.1| zinc knuckle transcription factor [Trichophyton equinum CBS 127.97]
Length = 473
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKD 237
TC NCG+ GH A C K CF CG H C + C +C+K GH A +
Sbjct: 52 TCRNCGQAGHFARECPEPRKPSGACFNCGQEGHNKSDCPNPRVFTGTCRVCEKEGHPAAE 111
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
CPD+ +C C GH C + L+
Sbjct: 112 CPDRP------PDICKNCKGEGHKTMECTENRKLE 140
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 69/167 (41%), Gaps = 34/167 (20%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCR---SAVKR-KKPCFVCGSLEHGVRQCSKAQ----DCF 226
P DR C NCG+ GH+ +C+ S V+R + C C H R C +A+ C
Sbjct: 260 PFDRQIPKCSNCGKMGHIMKSCKEELSVVERVEVKCVNCKQPGHRARDCKEARVDRFACR 319
Query: 227 ICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH---------DMFSCRNSYSLD----- 272
C KGGHR+ D+ + C +C + GH +CRN S D
Sbjct: 320 NCGKGGHRSN---DRTEPRSAEGVECKRCNEVGHFAKDCPQGGGSRACRNCGSEDHIARD 376
Query: 273 -----DLKEVQCYICRCFGHLC--CVNISDAVPGEVSCFRCGQLGHT 312
++ V C C GH C D +V C CG++GHT
Sbjct: 377 CDQPRNMANVTCRNCEEMGHFSRDCTKKKDW--SKVKCSCCGEMGHT 421
>gi|119610730|gb|EAW90324.1| NACHT, leucine rich repeat and PYD (pyrin domain) containing 1,
isoform CRA_d [Homo sapiens]
Length = 1612
Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRK----KPCFVCGSLEHGVRQCSKAQD----------CFIC 228
C++C + G +C +A++ + + C+ CGS +H + +C D CF+C
Sbjct: 1471 CFHCRKPGRGIADCPAALENQDMGTRRCYKCGSTDHEITKCKAKVDPPLGECPFAECFVC 1530
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
+ GH ++ CPD K + + C G H C S + D + V
Sbjct: 1531 GEMGHLSRSCPDNPKGLYADGSGCQLHGSVEHLKKDCPESENSDRMATV 1579
Score = 46.6 bits (109), Expect = 0.016, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYS--LD 272
RQ +K A CF C+K G DCP ++ + C KCG + H++ C+ L
Sbjct: 1461 RQGAKKNAMVCFHCRKPGRGIADCPAALENQDMGTRRCYKCGSTDHEITKCKAKVDPPLG 1520
Query: 273 DLKEVQCYICRCFGHL 288
+ +C++C GHL
Sbjct: 1521 ECPFAECFVCGEMGHL 1536
Score = 39.3 bits (90), Expect = 2.3, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVP 298
K + +NA VC C G + C + D+ +CY C H C D
Sbjct: 1460 KRQGAKKNAMVCFHCRKPGRGIADCPAALENQDMGTRRCYKCGSTDHEITKCKAKVDPPL 1519
Query: 299 GE---VSCFRCGQLGH 311
GE CF CG++GH
Sbjct: 1520 GECPFAECFVCGEMGH 1535
>gi|117581809|gb|ABK41339.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSNVQHTNVMMQRGNFKGPRRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|86277567|gb|ABC88291.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 34/47 (72%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CGS EH ++ C++ Q F+ K
Sbjct: 392 CFNCGKEGHIARNCRAP--RKKGCWKCGSEEHQMKDCTERQANFLGK 436
>gi|46137255|ref|XP_390319.1| hypothetical protein FG10143.1 [Gibberella zeae PH-1]
Length = 434
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 54/138 (39%), Gaps = 18/138 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHRAK 236
+CYNCG +GH +C K C CG H V C + +C C + GH AK
Sbjct: 271 SCYNCGADGHRVRDCPEPRVDKNACKNCGKSGHKVVDCEEPPNPANVECRKCSEVGHFAK 330
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNIS 294
DCP + C CG GH C D+ V C C GH C
Sbjct: 331 DCPQG------GGRACRNCGQEGHMAKECDQPR---DMSTVTCRNCEQQGHYSKECPLPR 381
Query: 295 DAVPGEVSCFRCGQLGHT 312
D +V C C + GHT
Sbjct: 382 DW--SKVQCSNCQEYGHT 397
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 206 CFVCGSLEHGVRQCSKAQD--CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMF 263
CF CG + H +C Q+ C CKK GH KDCP+ VC CG+ GH
Sbjct: 53 CFGCGEIGHRRAECPNPQEMACRYCKKEGHMRKDCPEA------PPMVCENCGEEGHFRK 106
Query: 264 SCRNSYSLD 272
C ++
Sbjct: 107 HCEKPRKIN 115
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 12/99 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFIC 228
+PP+ C C E GH A +C R C CG H ++C + +D C C
Sbjct: 310 EPPNPANVECRKCSEVGHFAKDCPQGGGRA--CRNCGQEGHMAKECDQPRDMSTVTCRNC 367
Query: 229 KKGGHRAKDCP-DKHKSGFQNAQVCLKCGDSGHDMFSCR 266
++ GH +K+CP + S Q C C + GH C+
Sbjct: 368 EQQGHYSKECPLPRDWSKVQ----CSNCQEYGHTKVRCK 402
>gi|22596338|gb|AAN03118.1|AF457064_1 gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQQTNVMMQRGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + + V ++ G + K CF C K GH A++C
Sbjct: 348 CQGVGGPGHKARVLAEAMSQVQQTNVM--MQRGNFRGPKRIKCFNCGKEGHLARNCRAPR 405
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 KKG------CWKCGKEGHQMKDC 422
>gi|426230074|ref|XP_004023537.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger CCHC domain-containing
protein 9 [Ovis aries]
Length = 271
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 14/110 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C +A++ ++ C+ CGS EH + +C D CF+
Sbjct: 129 VCFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
C + GH ++ CPD K + + C CG H C S + D + V
Sbjct: 189 CGEMGHLSRSCPDNPKGLYADGGGCRLCGSVEHMKKDCPESQNSDRMVTV 238
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C++ GH DCP ++ +C +CG + H++ C+ +L
Sbjct: 120 RQAAKKNAMVCFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEITKCKAKVDPALG 179
Query: 273 DLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+ +C++C GHL C N C CG + H
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCRLCGSVEH 221
Score = 37.4 bits (85), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVP 298
K ++ +NA VC C GH + C + ++ CY C H C D
Sbjct: 119 KRQAAKKNAMVCFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEITKCKAKVDPAL 178
Query: 299 GEVS---CFRCGQLGH 311
GE CF CG++GH
Sbjct: 179 GEFPFAKCFVCGEMGH 194
>gi|118353410|ref|XP_001009973.1| Zinc knuckle family protein [Tetrahymena thermophila]
gi|89291740|gb|EAR89728.1| Zinc knuckle family protein [Tetrahymena thermophila SB210]
Length = 612
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 64/159 (40%), Gaps = 40/159 (25%)
Query: 168 RGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSL--EHGVRQCSKAQDC 225
+ RYF + TC C ++GH C VK VC + +H RQC + + C
Sbjct: 306 KNNRYFQQEQKPQMTCRRCKQQGHFERMCMLEVKD-----VCNNCLGDHFARQCQQ-KIC 359
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC----RNSYS----------- 270
+ C + GH + +CP QN Q C +C GH C NSYS
Sbjct: 360 YSCSQFGHASANCPK------QNQQKCSRCQKPGHIKADCGAIFMNSYSKYKQNTPFNGI 413
Query: 271 ------LDDLKEVQCYICRCFGHLCCVN----ISDAVPG 299
DD K ++C +C GH C N I D + G
Sbjct: 414 EEEWKKTDDQK-IKCMVCHKKGHSNCKNDYQKIKDDIYG 451
>gi|299929703|gb|ADJ58059.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSNVQHANVMMQRGNFKGPRSIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|299930159|gb|ADJ58287.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSNVQHANVMMQRGNFKGPRSIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|330912764|ref|XP_003296063.1| hypothetical protein PTT_04676 [Pyrenophora teres f. teres 0-1]
gi|311332086|gb|EFQ95837.1| hypothetical protein PTT_04676 [Pyrenophora teres f. teres 0-1]
Length = 512
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 68/166 (40%), Gaps = 35/166 (21%)
Query: 177 DRGWQTCYNCGEEGHMAVNC------RSAVKRKKPCFVCGSLEHGVRQCSKAQD----CF 226
DRG C NC E GH+ +C R ++ + C C + H R C K + C
Sbjct: 303 DRGVPLCNNCNELGHVRKHCKQEQPERENMQPETQCVYCQEVGHRARDCPKERTNPFACK 362
Query: 227 ICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH--------DMFSCRNSYSLDDLKE-- 276
CK+ GH +K+CP+ + C KC ++GH +CRN S D + +
Sbjct: 363 NCKQEGHNSKECPEPRSA---EGVECRKCNETGHFSKDCPNVAARTCRNCGSADHMAKEC 419
Query: 277 --------VQCYICRCFGHLC--CVNISDAVPGEVSCFRCGQLGHT 312
V C C GH C D +V C C ++GHT
Sbjct: 420 DQPRNPDTVTCRNCEKMGHFSKDCPEPRDY--SKVKCSNCQEMGHT 463
Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRC 284
C ICK+ GH A+DCPDK + G C CG GH+ C N ++ E C +C
Sbjct: 107 CRICKQTGHFARDCPDKPEGGGGLTGECYNCGQVGHNKADCPNE-RVERPFEGTCKLCDQ 165
Query: 285 FGH 287
GH
Sbjct: 166 EGH 168
>gi|342887520|gb|EGU87002.1| hypothetical protein FOXB_02396 [Fusarium oxysporum Fo5176]
Length = 457
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 54/138 (39%), Gaps = 17/138 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHRAK 236
+C+NCG +GH +C K C CG H C + +C C + GH AK
Sbjct: 280 SCFNCGADGHRVRDCPEPRVDKNACKNCGKSGHRAADCEEPPNPANVECRKCNEMGHFAK 339
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNIS 294
DCP S + C CG GH C D+ V C C GH C
Sbjct: 340 DCPQGGGS-----RACRNCGQEGHISKDCDQPR---DMSTVTCRNCEKQGHFSRECPEPK 391
Query: 295 DAVPGEVSCFRCGQLGHT 312
D +V C C + GHT
Sbjct: 392 DWS--KVQCSNCQEYGHT 407
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 206 CFVCG--SLEHGVRQCSKAQD--CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHD 261
CF CG H +C Q+ C CK+ GH K+CPDK +C CGD GH
Sbjct: 60 CFGCGETGFSHRRAECPNPQEMTCRFCKQPGHMIKECPDKP------PMICENCGDEGHM 113
Query: 262 MFSC 265
+C
Sbjct: 114 RKNC 117
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFIC 228
+PP+ C C E GH A +C + C CG H + C + +D C C
Sbjct: 319 EPPNPANVECRKCNEMGHFAKDCPQGGGSRA-CRNCGQEGHISKDCDQPRDMSTVTCRNC 377
Query: 229 KKGGHRAKDCPD-KHKSGFQNAQVCLKCGDSGHDMFSCR 266
+K GH +++CP+ K S Q C C + GH C+
Sbjct: 378 EKQGHFSRECPEPKDWSKVQ----CSNCQEYGHTKVRCK 412
>gi|331029860|gb|AEC50058.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ + NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+
Sbjct: 365 EAMSQAQQHTNIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWK 414
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 415 CGKEGHQMKDCTERQANFLGK 435
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G+ + K CF C K GH A++C K G C KCG GH M C
Sbjct: 378 MQKGIFKGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 425
>gi|5931483|dbj|BAA84661.1| gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 54.3 bits (129), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCF----ICKKGGHRAKDC 238
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F + + G K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFFRENLAFQQGKAGKFS 447
Query: 239 PDKHKSGFQNAQVCLKCGDSGHD 261
++ ++ N+ K GD G D
Sbjct: 448 SEQTRT---NSPTSRKLGDGGRD 467
Score = 40.4 bits (93), Expect = 1.1, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQRGNFKGQKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|336372146|gb|EGO00486.1| hypothetical protein SERLA73DRAFT_136388 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384888|gb|EGO26036.1| hypothetical protein SERLADRAFT_466996 [Serpula lacrymans var.
lacrymans S7.9]
Length = 330
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 16/99 (16%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP------CFVCGSLEHGVRQCSKAQD---------CFI 227
C+ C ++GH A +C +A + +K C+ CGS H + +C K +D CF+
Sbjct: 152 CFACRKKGHAARDCPTATEGRKNNKIVGICYRCGSSRHNLARCKKPEDPLNPLPFASCFV 211
Query: 228 CKKGGHRAKDCP-DKHKSGFQNAQVCLKCGDSGHDMFSC 265
C GH A CP +K + + + C CGD+ H +C
Sbjct: 212 CSGKGHLASSCPKNKERGIYPDGGCCKLCGDTTHLAKNC 250
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQN--AQVCLKCGDSGHDMFSCRNSY-SLDDLKEVQCYI 281
CF C+K GH A+DCP + N +C +CG S H++ C+ L+ L C++
Sbjct: 152 CFACRKKGHAARDCPTATEGRKNNKIVGICYRCGSSRHNLARCKKPEDPLNPLPFASCFV 211
Query: 282 CRCFGHL 288
C GHL
Sbjct: 212 CSGKGHL 218
>gi|260943696|ref|XP_002616146.1| hypothetical protein CLUG_03387 [Clavispora lusitaniae ATCC 42720]
gi|238849795|gb|EEQ39259.1| hypothetical protein CLUG_03387 [Clavispora lusitaniae ATCC 42720]
Length = 171
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 69/168 (41%), Gaps = 46/168 (27%)
Query: 181 QTCYNCGEEGHMA----------VNCRSA-----------VKRKKPCFVCGSLEHGVRQC 219
++CY CGE GH+A NCR A K C++CG + H C
Sbjct: 4 RSCYKCGESGHIADNCQQQERLCYNCRQAGHESSACPEPKTAESKQCYLCGDIGHIRGDC 63
Query: 220 ---SKAQDCFICKKGGHRAKDCPDKH----------KSG-FQNAQVCLKCGDSGHDMFSC 265
++ C+ C + GH +++CP KSG F + C KCG H C
Sbjct: 64 PNSAQGSKCYNCSEFGHISRECPKNEGAAPAAPAHKKSGKFTKSPTCYKCGGPNHFAKDC 123
Query: 266 RNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVPGEVSCFRCGQLGH 311
+ V+CY C GH+ C SD V SC+ CGQ GH
Sbjct: 124 Q-------AGSVKCYSCGKSGHISKECTLASDKV--TKSCYNCGQTGH 162
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGHRAK 236
TCY CG H A +C++ + C+ CG H ++C+ A D C+ C + GH AK
Sbjct: 109 TCYKCGGPNHFAKDCQAGSVK---CYSCGKSGHISKECTLASDKVTKSCYNCGQTGHIAK 165
Query: 237 DC 238
DC
Sbjct: 166 DC 167
>gi|71398909|ref|XP_802672.1| poly-zinc finger protein 2 [Trypanosoma cruzi strain CL Brener]
gi|70864476|gb|EAN81226.1| poly-zinc finger protein 2, putative [Trypanosoma cruzi]
Length = 192
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 64/159 (40%), Gaps = 31/159 (19%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-----KAQDCFICKKGGHRAK 236
CY CG GH + +C V CF CG H + C+ K CF C++ GHRA
Sbjct: 2 VCYRCGGVGHTSRDCSRPVNESL-CFRCGKPGHMSKDCASDIDVKNAPCFFCQQAGHRAN 60
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS-----------------YS---LDDLKE 276
+CP + + Q C +CG+ GH C N Y+ + ++
Sbjct: 61 NCP---LAPPEARQPCYRCGEEGHISRDCTNPRLPRSEQSCFHCHKTGHYARECPEVIEN 117
Query: 277 VQCYICRCFGHLC--CVNISDAVPGEVSCFRCGQLGHTG 313
++C C GH+ C A CFRCG GH
Sbjct: 118 LKCNSCGVTGHIARRCPERIRAARAFYPCFRCGMQGHVA 156
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 8/118 (6%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSA--VKRKKPCFVCGSLEHGVRQCSKAQD---CFICKK 230
P Q CY CGEEGH++ +C + + ++ CF C H R+C + + C C
Sbjct: 66 PPEARQPCYRCGEEGHISRDCTNPRLPRSEQSCFHCHKTGHYARECPEVIENLKCNSCGV 125
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
GH A+ CP++ ++ + C +CG GH +C N+ L ++ CY+C GHL
Sbjct: 126 TGHIARRCPERIRAA-RAFYPCFRCGMQGHVARNCPNT-RLPYEGQL-CYVCGEKGHL 180
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-------AQDCFICK 229
R Q+C++C + GH A C ++ K C CG H R+C + CF C
Sbjct: 92 PRSEQSCFHCHKTGHYARECPEVIENLK-CNSCGVTGHIARRCPERIRAARAFYPCFRCG 150
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSL 271
GH A++CP+ Q+C CG+ GH C++ L
Sbjct: 151 MQGHVARNCPNTRLP--YEGQLCYVCGEKGHLARDCKSEAPL 190
>gi|307206122|gb|EFN84202.1| Zinc finger CCHC domain-containing protein 9 [Harpegnathos
saltator]
Length = 404
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 26/128 (20%)
Query: 150 EGVTTVEISDNIVL------RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRK 203
+GV E+ I L R L R ++ C+NC + GH+ +C R+
Sbjct: 256 KGVPQSEVDIAIKLERRKAERALARAKKFL---------CFNCRKSGHVLSDCPELGGRE 306
Query: 204 KP----CFVCGSLEHGVRQCSKAQD-------CFICKKGGHRAKDCPDKHKSGFQNAQVC 252
+ CF CGS EH +C +D CFIC++ GH + CPD K + + C
Sbjct: 307 EAGTGICFKCGSTEHTHFECKVHKDSTYKYAKCFICREQGHISSQCPDNPKGVYPDGGCC 366
Query: 253 LKCGDSGH 260
CG H
Sbjct: 367 KICGAVTH 374
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRC 284
CF C+K GH DCP+ +C KCG + H F C+ + K +C+ICR
Sbjct: 286 CFNCRKSGHVLSDCPELGGREEAGTGICFKCGSTEHTHFECK-VHKDSTYKYAKCFICRE 344
Query: 285 FGHL---CCVNISDAVPGEVSCFRCGQLGH 311
GH+ C N P C CG + H
Sbjct: 345 QGHISSQCPDNPKGVYPDGGCCKICGAVTH 374
>gi|281331908|emb|CAY83124.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 1433
Score = 54.3 bits (129), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CGS H ++ C++ Q F+
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGSEGHQMKDCTERQANFL 432
Score = 41.6 bits (96), Expect = 0.45, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQIQNTNIM--MQRGNFKGQKRIKCFNCGKEGHLARNCRAPR 407
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 KKG------CWKCGSEGHQMKDC 424
>gi|332079144|gb|AEE00152.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 448
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 10/81 (12%)
Query: 150 EGVTTVEISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V + NI++ R RGPR C+NCG+EGH+A NCR+ RKK C+
Sbjct: 365 EAMSQVTNAANIMMQRGNFRGPRKII-------KCFNCGKEGHLARNCRAP--RKKGCWK 415
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 416 CGKEGHQMKDCTERQANFLGK 436
>gi|118426876|gb|ABK91189.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + LRGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNLRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|299929713|gb|ADJ58064.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQQANVMMQRGNFKGPRRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|213138379|gb|ACJ44848.1| gag protein [Human immunodeficiency virus 1]
Length = 261
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 12/113 (10%)
Query: 120 KKEADKIEIEDQSVIVRKEEQKVET---ADNGDEGVTTVEISDNIVLRKLLRGPRYFDPP 176
K+ DKIE E + ++ ++ T + N E ++ ++ ++ R +GP+
Sbjct: 98 KEALDKIEEEQNKSQQKTKQAEMATGKASQNYAEAMSQANQANMMMQRSNFKGPKRII-- 155
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 156 -----KCFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 201
>gi|50761973|ref|XP_424900.1| PREDICTED: zinc finger CCHC domain-containing protein 9 [Gallus
gallus]
Length = 235
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C E GH +C + ++ + C+ CGS EH + +C D CFI
Sbjct: 94 VCFHCREPGHGVADCPAVLESQDMGTGICYRCGSTEHDIGKCKAKIDPAVGAFPYAKCFI 153
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
C + GH ++ CPD K + C CG H C + +LD +
Sbjct: 154 CGEMGHLSRSCPDNPKGLYAEGGCCRLCGSVEHYRKDCPENQNLDQV 200
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLDDLKEVQC 279
A CF C++ GH DCP +S +C +CG + HD+ C+ ++ +C
Sbjct: 92 AMVCFHCREPGHGVADCPAVLESQDMGTGICYRCGSTEHDIGKCKAKIDPAVGAFPYAKC 151
Query: 280 YICRCFGHL--CCVNISDAVPGEVSCFR-CGQLGH 311
+IC GHL C + + E C R CG + H
Sbjct: 152 FICGEMGHLSRSCPDNPKGLYAEGGCCRLCGSVEH 186
Score = 37.4 bits (85), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 247 QNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGH---LCCVNISDAVPG--EV 301
+NA VC C + GH + C D+ CY C H C I AV
Sbjct: 90 KNAMVCFHCREPGHGVADCPAVLESQDMGTGICYRCGSTEHDIGKCKAKIDPAVGAFPYA 149
Query: 302 SCFRCGQLGH 311
CF CG++GH
Sbjct: 150 KCFICGEMGH 159
>gi|320167039|gb|EFW43938.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 357
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 19/142 (13%)
Query: 130 DQSVIVRKEEQKVETADNGDEGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEE 189
D + ++ E A + + ++ R+L RG Q C+NC ++
Sbjct: 162 DLAFPAEAARERSEPAQDSAQPKRLTRHEKDVNARRLRRG--------LSKQICFNCRKK 213
Query: 190 GHMAVNCRSAVKRKKP---CFVCGSLEHGVRQCSKAQD--------CFICKKGGHRAKDC 238
GH C++ C+ CGS EH + C CF+C+K GH +K C
Sbjct: 214 GHSVSECKAGKTVSDATGLCYACGSTEHTTKSCRVPNPSGAMPFAMCFVCRKTGHLSKFC 273
Query: 239 PDKHKSGFQNAQVCLKCGDSGH 260
PD + + + C C H
Sbjct: 274 PDNPRGMYPDGGSCTHCTSVRH 295
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 216 VRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLK 275
+R+ Q CF C+K GH +C K+ +C CG + H SCR +
Sbjct: 198 LRRGLSKQICFNCRKKGHSVSEC-KAGKTVSDATGLCYACGSTEHTTKSCRVPNPSGAMP 256
Query: 276 EVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
C++CR GHL C N P SC C + H
Sbjct: 257 FAMCFVCRKTGHLSKFCPDNPRGMYPDGGSCTHCTSVRH 295
>gi|213521422|gb|ACJ50597.1| zinc finger protein [Lutzomyia shannoni]
Length = 150
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 41/138 (29%)
Query: 178 RGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD---CFICKKGGHR 234
R + CY C + GH A C+ R C+ C H R+CS++ D C+ C K GH
Sbjct: 38 RNREKCYKCNQTGHFARECKEEADR---CYRCNGTGHIARECSQSADDPSCYNCNKTGHL 94
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNIS 294
A+ CP++ +D+ + + CY C GH IS
Sbjct: 95 ARHCPEQ-----------------------------IDNRQSMSCYNCNKSGH-----IS 120
Query: 295 DAVP-GEVSCFRCGQLGH 311
P G SC+ CG+LGH
Sbjct: 121 RHCPEGGKSCYICGKLGH 138
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 182 TCYNCGEEGHMAVNCRSAV--KRKKPCFVCGSLEHGVRQCSKA-QDCFICKKGGHRAKDC 238
+CYNC + GH+A +C + ++ C+ C H R C + + C+IC K GH +++C
Sbjct: 84 SCYNCNKTGHLARHCPEQIDNRQSMSCYNCNKSGHISRHCPEGGKSCYICGKLGHISREC 143
>gi|401843026|gb|EJT44984.1| GIS2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 153
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 183 CYNCGEEGHMAVNCRSA-VKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
CYNC + GH+ +C K C+ CG H +C+ Q CF C + GH +K+CP+
Sbjct: 25 CYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECA-VQRCFNCNQTGHISKECPEP 83
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEV 301
K+ + C KCG H C D ++CY C GH+ S +
Sbjct: 84 KKATRFSKVSCYKCGGPNHMAKDCMKE---DGASGLKCYTCGQAGHM-----SRDCQNDR 135
Query: 302 SCFRCGQLGH 311
C+ C + GH
Sbjct: 136 LCYNCNETGH 145
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 17/89 (19%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK----RKKPCFVCGSLEHGVRQCSK-----AQDCFICKKG 231
Q C+NC + GH++ C K K C+ CG H + C K C+ C +
Sbjct: 65 QRCFNCNQTGHISKECPEPKKATRFSKVSCYKCGGPNHMAKDCMKEDGASGLKCYTCGQA 124
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
GH ++DC QN ++C C ++GH
Sbjct: 125 GHMSRDC--------QNDRLCYNCNETGH 145
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 45/124 (36%), Gaps = 15/124 (12%)
Query: 203 KKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNA------------- 249
+K C+VCG + H C + C+ C K GH DC F+
Sbjct: 3 QKACYVCGKIGHLAEDCDSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSEC 62
Query: 250 --QVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCG 307
Q C C +GH C +V CY C H+ + + + C+ CG
Sbjct: 63 AVQRCFNCNQTGHISKECPEPKKATRFSKVSCYKCGGPNHMAKDCMKEDGASGLKCYTCG 122
Query: 308 QLGH 311
Q GH
Sbjct: 123 QAGH 126
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 182 TCYNCGEEGHMAVNCR-----SAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAK 236
+CY CG HMA +C S +K C+ CG H R C + C+ C + GH +K
Sbjct: 93 SCYKCGGPNHMAKDCMKEDGASGLK----CYTCGQAGHMSRDCQNDRLCYNCNETGHISK 148
Query: 237 DC 238
DC
Sbjct: 149 DC 150
>gi|299930377|gb|ADJ58396.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ R L+GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHPNIMMQRGNLKGPRRII-------KCFNCGKEGHLARNCRAP--RKKGCWKC 415
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 416 GKEGHQMKDCTERQANFLGK 435
>gi|87131049|gb|ABD24129.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 360 EAMSQVHQTNIMMQRNNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 409
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 410 GKEGHQMKDCTERQANFLGK 429
>gi|315056357|ref|XP_003177553.1| hypothetical protein MGYG_01625 [Arthroderma gypseum CBS 118893]
gi|311339399|gb|EFQ98601.1| hypothetical protein MGYG_01625 [Arthroderma gypseum CBS 118893]
Length = 472
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKD 237
TC NCG+ GH A C K CF CG H C + C IC+K GH A
Sbjct: 49 TCRNCGQAGHFARECPEPRKLSGACFNCGQEGHNKSDCPNPRIFTGTCRICEKEGHPAAQ 108
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
CPD+ +C C GH C + L+
Sbjct: 109 CPDRP------PDICKNCKAEGHKTMECTENRKLE 137
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 71/167 (42%), Gaps = 34/167 (20%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCR---SAVKR-KKPCFVCGSLEHGVRQCSKAQ----DCF 226
P DR C NCG+ GH+ +C+ S V+R + C C H R C +A+ C
Sbjct: 257 PLDRQIPKCSNCGQMGHIMKSCKEEHSVVERVEVKCVNCKQPGHRARDCKEARVDRFACR 316
Query: 227 ICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH---------DMFSCRNSYSLD----- 272
C KGGHR+ +C + + C +C + GH +CRN S D
Sbjct: 317 NCGKGGHRSNECTEPRSA---EGVECKRCNEVGHFAKDCPQGGGSRACRNCGSEDHMVKD 373
Query: 273 -----DLKEVQCYICRCFGHLC--CVNISDAVPGEVSCFRCGQLGHT 312
++ V C+ C GH C D +V C CG++GHT
Sbjct: 374 CDQPRNMATVTCHNCEEMGHFSRDCTKKKDW--SKVKCSCCGEMGHT 418
>gi|347596136|gb|AEP14044.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSNVQHANIMMQRGNFKGPRKIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|348540581|ref|XP_003457766.1| PREDICTED: cellular nucleic acid-binding protein-like isoform 3
[Oreochromis niloticus]
Length = 137
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 62/139 (44%), Gaps = 28/139 (20%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP---------CFVCGSLEHGVRQCSKAQD-CFICKKGG 232
C+ CG GH NC S + + C+ CG L H R C + +D C+ C K G
Sbjct: 6 CFGCGHSGHWVKNCPSGGRGRGKGRGRGKDLFCYRCGELGHVARDCERTEDVCYNCGKAG 65
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVN 292
H A++C H+ Q C CG GH C ++V+CY C GH V
Sbjct: 66 HMARNCNHAHE------QKCYSCGSFGHIQKCC---------EKVKCYRCGEIGH---VA 107
Query: 293 ISDAVPGEVSCFRCGQLGH 311
+ + E++C+ G+ GH
Sbjct: 108 VHCSKASELNCYNYGKSGH 126
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAK 236
+R CYNCG+ GHMA NC A ++K C+ CGS H +++C + C+ C + GH A
Sbjct: 52 ERTEDVCYNCGKAGHMARNCNHAHEQK--CYSCGSFGH-IQKCCEKVKCYRCGEIGHVAV 108
Query: 237 DCP 239
C
Sbjct: 109 HCS 111
>gi|385301300|gb|EIF45501.1| zinc knuckle domain protein [Dekkera bruxellensis AWRI1499]
Length = 189
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 21/137 (15%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRA 235
+TCY CG GH A +C + ++ C+ C S +H + C + + CF C K GH
Sbjct: 6 RTCYKCGLTGHKAEDC---PQTQRLCYNCRSPDHEAKDCPLPKQTNTKQCFNCGKIGHIR 62
Query: 236 KDCPDKHKSGFQNAQV-CLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNIS 294
+CP+ + QV C CG GH ++ Y+ +++ CY C F HL
Sbjct: 63 SECPEP-----PHRQVKCYNCGKFGHVA---KDCYAEKRSEKIVCYNCGGFNHL----AK 110
Query: 295 DAVPGEVSCFRCGQLGH 311
D V C+ CG+ GH
Sbjct: 111 DCRADPVKCYNCGETGH 127
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 46/106 (43%), Gaps = 20/106 (18%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICK 229
P + C+NCG+ GH+ C R+ C+ CG H + C S+ C+ C
Sbjct: 44 PKQTNTKQCFNCGKIGHIRSECPEPPHRQVKCYNCGKFGHVAKDCYAEKRSEKIVCYNCG 103
Query: 230 KGGHRAKDC---PDK--------HKSGF----QNAQVCLKCGDSGH 260
H AKDC P K H + F A+VC KCG+ GH
Sbjct: 104 GFNHLAKDCRADPVKCYNCGETGHLAKFCHSKSKAKVCFKCGEEGH 149
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Query: 182 TCYNCGEEGHMAVNCRS-AVKRKKPCFVCGSLEHGVRQC---SKAQDCFICKKGGHRAKD 237
CYNCG H+A +CR+ VK C+ CG H + C SKA+ CF C + GH A+
Sbjct: 98 VCYNCGGFNHLAKDCRADPVK----CYNCGETGHLAKFCHSKSKAKVCFKCGEEGHLARF 153
Query: 238 CP 239
CP
Sbjct: 154 CP 155
>gi|33331455|gb|AAQ10901.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQQPNIMMQRGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|429249182|gb|AFZ77635.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + + +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHTNIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G+ + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQKGIFKGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|303322458|ref|XP_003071222.1| zinc knuckle containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240110921|gb|EER29077.1| zinc knuckle containing protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 195
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 26/130 (20%)
Query: 202 RKKPCFVCGSLEHGVRQCSKA--------QDCFICKKGGHRAKDCPDKHKSGFQNAQVCL 253
++K C+ CG H R C +A Q+C+ C + GH +++CP +SG Q C
Sbjct: 42 KEKSCYRCGLTGHISRDCPQAGESGGARGQECYKCGQVGHISRECPQGGESGEARGQECY 101
Query: 254 KCGDSGHDMFSC------------RNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEV 301
KCG GH +C SY + + + CY C +GH D G+
Sbjct: 102 KCGQVGHISRNCGQYSGYNGGGYNAGSYRYGN-RPLTCYSCGGYGH----RARDCTQGQ- 155
Query: 302 SCFRCGQLGH 311
C+ CG+ GH
Sbjct: 156 KCYNCGETGH 165
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 19/102 (18%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK---------------RKKPCFVCGSLEHGVRQCSKAQDC 225
Q CY CG+ GH++ NC R C+ CG H R C++ Q C
Sbjct: 98 QECYKCGQVGHISRNCGQYSGYNGGGYNAGSYRYGNRPLTCYSCGGYGHRARDCTQGQKC 157
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
+ C + GH ++DC + K +VC KC GH +C N
Sbjct: 158 YNCGETGHVSRDCTTEGK----GERVCYKCKQPGHVQAACPN 195
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 53/131 (40%), Gaps = 35/131 (26%)
Query: 181 QTCYNCGEEGHMAVNC----RSAVKRKKPCFVCGSLEHGVRQC----------------- 219
Q CY CG+ GH++ C S R + C+ CG + H R C
Sbjct: 71 QECYKCGQVGHISRECPQGGESGEARGQECYKCGQVGHISRNCGQYSGYNGGGYNAGSYR 130
Query: 220 --SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
++ C+ C GHRA+DC Q C CG++GH C + + E
Sbjct: 131 YGNRPLTCYSCGGYGHRARDC--------TQGQKCYNCGETGHVSRDC----TTEGKGER 178
Query: 278 QCYICRCFGHL 288
CY C+ GH+
Sbjct: 179 VCYKCKQPGHV 189
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%)
Query: 220 SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQC 279
+K + C+ C GH ++DCP +SG Q C KCG GH C + + +C
Sbjct: 41 AKEKSCYRCGLTGHISRDCPQAGESGGARGQECYKCGQVGHISRECPQGGESGEARGQEC 100
Query: 280 YICRCFGHL 288
Y C GH+
Sbjct: 101 YKCGQVGHI 109
>gi|38491606|gb|AAR22005.1| gag protein [Human immunodeficiency virus 1]
Length = 484
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ R RGPR C+NCG+EGH+A NC++ RKK C+ C
Sbjct: 360 EAMSQVQQAGIMMQRSNFRGPRTIK--------CFNCGKEGHLARNCKAP--RKKGCWKC 409
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 410 GKEGHQMKDCTERQANFLGK 429
>gi|225708204|gb|ACO09948.1| Zinc finger CCHC domain-containing protein 9 [Osmerus mordax]
Length = 293
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLDDLKEVQCYIC 282
CF C+K GH DCP+ + +C +CG + H++ CR +LD+ +C+IC
Sbjct: 154 CFNCRKPGHGLADCPEAERDEEMGRDICYRCGSTEHEIQRCRAKIDPALDEYPYAKCFIC 213
Query: 283 RCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
GHL C N SC CG + H
Sbjct: 214 GKMGHLSRSCSDNPKGLYAAGGSCRVCGSVEH 245
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 14/97 (14%)
Query: 183 CYNCGEEGHMAVNCRSAVK----RKKPCFVCGSLEHGVRQCSKAQD----------CFIC 228
C+NC + GH +C A + + C+ CGS EH +++C D CFIC
Sbjct: 154 CFNCRKPGHGLADCPEAERDEEMGRDICYRCGSTEHEIQRCRAKIDPALDEYPYAKCFIC 213
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
K GH ++ C D K + C CG H C
Sbjct: 214 GKMGHLSRSCSDNPKGLYAAGGSCRVCGSVEHFQKDC 250
>gi|425774261|gb|EKV12574.1| hypothetical protein PDIG_43280 [Penicillium digitatum PHI26]
gi|425778540|gb|EKV16664.1| hypothetical protein PDIP_34510 [Penicillium digitatum Pd1]
Length = 185
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 68/163 (41%), Gaps = 34/163 (20%)
Query: 173 FDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQC---SKAQDCFIC 228
F P RG C+NCGE H A +C K+ P C+ C H R+C +K + C+ C
Sbjct: 3 FPPAGRGG--CFNCGEASHQAKDC---PKKGNPTCYNCNGQGHLSRECQEPAKEKSCYRC 57
Query: 229 KKGGHRAKDCPD--KHKSGFQNAQVCLKCGDSGHDMFSCRN------------------S 268
+ GH +++CP +Q C KCG GH +C
Sbjct: 58 GQTGHLSRECPQGGDGNYSGGGSQECYKCGQVGHIARNCSQGGNYGGGYSTGGYGGGFGG 117
Query: 269 YSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
++ CY C FGH+ D G+ C+ CG++GH
Sbjct: 118 PGGAGGRQQTCYSCGGFGHM----ARDCTQGQ-KCYNCGEVGH 155
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 26/109 (23%)
Query: 181 QTCYNCGEEGHMAVNC----------------------RSAVKRKKPCFVCGSLEHGVRQ 218
Q CY CG+ GH+A NC A R++ C+ CG H R
Sbjct: 81 QECYKCGQVGHIARNCSQGGNYGGGYSTGGYGGGFGGPGGAGGRQQTCYSCGGFGHMARD 140
Query: 219 CSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
C++ Q C+ C + GH ++DCP + K ++C KC GH +C N
Sbjct: 141 CTQGQKCYNCGEVGHVSRDCPTEAKG----ERMCYKCKQPGHVQSACPN 185
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 69/170 (40%), Gaps = 46/170 (27%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK----------AQ 223
D P +G TCYNC +GH++ C+ K K C+ CG H R+C + +Q
Sbjct: 23 DCPKKGNPTCYNCNGQGHLSRECQEPAKEKS-CYRCGQTGHLSRECPQGGDGNYSGGGSQ 81
Query: 224 DCFICKKGGHRAKDCPDKHKSGFQNA------------------QVCLKCGDSGHDMFSC 265
+C+ C + GH A++C G + Q C CG GH
Sbjct: 82 ECYKCGQVGHIARNCSQGGNYGGGYSTGGYGGGFGGPGGAGGRQQTCYSCGGFGH----- 136
Query: 266 RNSYSLDDLKEVQCYICRCFGHLCCVNISDAVP----GEVSCFRCGQLGH 311
+ D + +CY C GH +S P GE C++C Q GH
Sbjct: 137 ---MARDCTQGQKCYNCGEVGH-----VSRDCPTEAKGERMCYKCKQPGH 178
>gi|9886937|gb|AAG01663.1| gag protein [Human immunodeficiency virus 1]
Length = 470
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ S+ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 339 EAMSQVQQSNIMMQRXNFKGPRRSI-------KCFNCGKEGHLARNCRAP--RKKGCWKC 389
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 390 GKEGHQMKDCTERQANFLGK 409
>gi|429249192|gb|AFZ77640.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + + +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHTNIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKAKVLAEAMSQVQHTNIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|63098362|gb|AAY32407.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 10/73 (13%)
Query: 158 SDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S+NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SNNIMMQKSNFKGPRRII-------KCFNCGKEGHLAKNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
Score = 37.4 bits (85), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHLAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|296485065|tpg|DAA27180.1| TPA: zinc finger, CCHC domain containing 9 [Bos taurus]
gi|440898449|gb|ELR49947.1| Zinc finger CCHC domain-containing protein 9 [Bos grunniens mutus]
Length = 271
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 14/110 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C +A++ ++ C+ CGS EH + +C D CF+
Sbjct: 129 VCFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
C + GH ++ CPD K + + C CG H C S + D + V
Sbjct: 189 CGEMGHLSRSCPDNPKGLYADGGGCRLCGSVEHMKKDCPESQNSDRVVTV 238
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C++ GH DCP ++ +C +CG + H++ C+ +L
Sbjct: 120 RQAAKKNAMVCFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEITKCKAKVDPALG 179
Query: 273 DLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+ +C++C GHL C N C CG + H
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCRLCGSVEH 221
Score = 37.4 bits (85), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVP 298
K ++ +NA VC C GH + C + ++ CY C H C D
Sbjct: 119 KRQAAKKNAMVCFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEITKCKAKVDPAL 178
Query: 299 GEVS---CFRCGQLGH 311
GE CF CG++GH
Sbjct: 179 GEFPFAKCFVCGEMGH 194
>gi|149036677|gb|EDL91295.1| cellular nucleic acid binding protein 1, isoform CRA_c [Rattus
norvegicus]
Length = 139
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 35 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 94
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 95 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 129
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 62/141 (43%), Gaps = 30/141 (21%)
Query: 183 CYNCGEEGHMAVNCRS-------AVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKK 230
C+ CG GH A C + R + C+ CG H + C + Q C+ C K
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRACYNCGRGGHIAKDCKEPKREREQCCYNCGK 65
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCC 290
GH A+DC + Q C CG+ GH D +V+CY C GH
Sbjct: 66 PGHLARDCD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH--- 107
Query: 291 VNISDAVPGEVSCFRCGQLGH 311
V I+ + EV+C+RCG+ GH
Sbjct: 108 VAINCSKTSEVNCYRCGESGH 128
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 51 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 107
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 108 VAINCS-------KTSEVNCYRCGESGH 128
>gi|148666813|gb|EDK99229.1| cellular nucleic acid binding protein, isoform CRA_b [Mus musculus]
Length = 140
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 36 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 95
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 96 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 130
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 51/121 (42%), Gaps = 27/121 (22%)
Query: 206 CFVCGSLEHGVRQCSKAQD------------CFICKKGGHRAKDCPDKHKSGFQNAQVCL 253
CF CG H R+C C+ C +GGH AKDC + + + Q C
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGACYNCGRGGHIAKDCKEPKR---EREQCCY 62
Query: 254 KCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTG 313
CG GH C D E +CY C FGH+ D +V C+RCG+ GH
Sbjct: 63 NCGKPGHLARDC------DHADEQKCYSCGEFGHI----QKDCT--KVKCYRCGETGHVA 110
Query: 314 L 314
+
Sbjct: 111 I 111
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 52 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 108
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 109 VAINCS-------KTSEVNCYRCGESGH 129
>gi|326416985|gb|ADZ73337.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQHANILMQRGNFKGPRKIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|195954494|gb|ACG58940.1| gag protein [Human immunodeficiency virus 1]
gi|238734212|gb|ACR55444.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V NI++ R RGPR C+NCG+EGH+A NC++ RKK C+
Sbjct: 363 EAMSQVAQQTNIMMQRGNFRGPRKIK--------CFNCGKEGHLARNCKAP--RKKGCWK 412
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 413 CGKEGHQMKDCTERQANFLGK 433
>gi|429249232|gb|AFZ77660.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + + +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQQTNIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQQTNIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|407736125|gb|AFU29439.1| gag protein [Human immunodeficiency virus 1]
gi|407736140|gb|AFU29452.1| gag protein [Human immunodeficiency virus 1]
gi|407736148|gb|AFU29459.1| gag protein [Human immunodeficiency virus 1]
gi|407736180|gb|AFU29487.1| gag protein [Human immunodeficiency virus 1]
gi|407736188|gb|AFU29494.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQNTNIMMQRGNFKGPRKIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|155371841|ref|NP_001094525.1| zinc finger CCHC domain-containing protein 9 [Bos taurus]
gi|148877390|gb|AAI46121.1| ZCCHC9 protein [Bos taurus]
Length = 271
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 14/110 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C +A++ ++ C+ CGS EH + +C D CF+
Sbjct: 129 VCFHCRQTGHGIADCPAALENQEMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
C + GH ++ CPD K + + C CG H C S + D + V
Sbjct: 189 CGEMGHLSRSCPDNPKGLYADGGGCRLCGSVEHMKKDCPESQNSDRVVTV 238
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C++ GH DCP ++ +C +CG + H++ C+ +L
Sbjct: 120 RQAAKKNAMVCFHCRQTGHGIADCPAALENQEMGTGICYRCGSTEHEITKCKAKVDPALG 179
Query: 273 DLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+ +C++C GHL C N C CG + H
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCRLCGSVEH 221
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVP 298
K ++ +NA VC C +GH + C + ++ CY C H C D
Sbjct: 119 KRQAAKKNAMVCFHCRQTGHGIADCPAALENQEMGTGICYRCGSTEHEITKCKAKVDPAL 178
Query: 299 GEVS---CFRCGQLGH 311
GE CF CG++GH
Sbjct: 179 GEFPFAKCFVCGEMGH 194
>gi|407736156|gb|AFU29466.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQNTNIMMQRGNFKGPRKIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|116784713|gb|ABK23446.1| unknown [Picea sitchensis]
Length = 243
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 62/143 (43%), Gaps = 22/143 (15%)
Query: 169 GPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFIC 228
GPR P + C NC GH A C +A C CG H +C K Q C C
Sbjct: 41 GPRSSRP----VELCNNCKRTGHYARECPNASV----CNNCGVSGHIASKCPKEQLCRNC 92
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
KK GH A DC +N VC CG +GH C +++ L K C C GH+
Sbjct: 93 KKPGHLAADC--------RNEPVCNMCGKTGHLAKEC-SAHELGLPKSALCKKCYLPGHI 143
Query: 289 CCVNISDAVPGEVSCFRCGQLGH 311
++D P + +C C Q GH
Sbjct: 144 ----MAD-CPNDKACNNCRQTGH 161
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 57/144 (39%), Gaps = 40/144 (27%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-------KAQDCFICKKGGH 233
Q C NC + GH+A +CR+ + C +CG H ++CS K+ C C GH
Sbjct: 87 QLCRNCKKPGHLAADCRN----EPVCNMCGKTGHLAKECSAHELGLPKSALCKKCYLPGH 142
Query: 234 RAKDCPDK------HKSGFQ-----NAQVCLKCGDSGHDMFSCRNSYSLDDL-------- 274
DCP+ ++G N+ VC CG+ GH + C S +
Sbjct: 143 IMADCPNDKACNNCRQTGHLARDCVNSPVCNGCGEPGHLVRDCPRVQSPPRIMPPRGGFG 202
Query: 275 ----------KEVQCYICRCFGHL 288
K + C +C GHL
Sbjct: 203 GGFGGGFDDFKIIICRVCGGRGHL 226
Score = 37.7 bits (86), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 41/98 (41%), Gaps = 21/98 (21%)
Query: 214 HGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDD 273
+G R + C CK+ GH A++CP NA VC CG SGH C
Sbjct: 40 YGPRSSRPVELCNNCKRTGHYARECP--------NASVCNNCGVSGHIASKC-------- 83
Query: 274 LKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
KE C C+ GHL + E C CG+ GH
Sbjct: 84 PKEQLCRNCKKPGHL-----AADCRNEPVCNMCGKTGH 116
>gi|407736172|gb|AFU29480.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQNTNIMMQRGNFKGPRKIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|373842380|gb|AEY77179.1| gag protein [Human immunodeficiency virus]
Length = 495
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + + +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHTNIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G+ + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQKGIFKGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|407736164|gb|AFU29473.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQNTNIMMQRGNFKGPRKIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|407736117|gb|AFU29432.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQNTNIMMQRGNFKGPRKIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|355729967|gb|AES10044.1| zinc finger, CCHC domain containing 9 [Mustela putorius furo]
Length = 270
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C +A++ + C+ CGS EH + +C D CF+
Sbjct: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
C + GH ++ CPD K + + C CG H C S + D + V
Sbjct: 189 CGEMGHLSRSCPDNPKGLYADGGCCRLCGSVDHFKKDCPESQNSDRMVTV 238
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C+K GH DCP ++ +C +CG + H++ C+ +L
Sbjct: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 179
Query: 273 DLKEVQCYICRCFGHL--CCVNISDAVPGEVSCFR-CGQLGH 311
+ +C++C GHL C + + + C R CG + H
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGCCRLCGSVDH 221
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVP 298
K ++ +NA VC C GH + C + D+ CY C H C D
Sbjct: 119 KRQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPAL 178
Query: 299 GEVS---CFRCGQLGH 311
GE CF CG++GH
Sbjct: 179 GEFPFAKCFVCGEMGH 194
>gi|57084761|ref|XP_536305.1| PREDICTED: zinc finger CCHC domain-containing protein 9 isoform 2
[Canis lupus familiaris]
Length = 271
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C +A++ + C+ CGS EH + +C D CF+
Sbjct: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
C + GH ++ CPD K + + C CG H C S + D + V
Sbjct: 189 CGEMGHLSRSCPDNPKGLYADGGCCRLCGSVEHFKKDCPESQNSDRMVTV 238
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C+K GH DCP ++ +C +CG + H++ C+ +L
Sbjct: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 179
Query: 273 DLKEVQCYICRCFGHL--CCVNISDAVPGEVSCFR-CGQLGH 311
+ +C++C GHL C + + + C R CG + H
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGCCRLCGSVEH 221
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVP 298
K ++ +NA VC C GH + C + D+ CY C H C D
Sbjct: 119 KRQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPAL 178
Query: 299 GEVS---CFRCGQLGH 311
GE CF CG++GH
Sbjct: 179 GEFPFAKCFVCGEMGH 194
>gi|168060692|ref|XP_001782328.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666187|gb|EDQ52848.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 188
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 197 RSAVKRKKPCFVCGSLEHGVRQCSKAQD--------CFICKKGGHRAKDCPDKHKSGFQN 248
++ +K + CF+C S +H + C + C C+ GH K+CP + KS +
Sbjct: 22 QAGMKPGEGCFLCKSKDHIAKHCPTKSEKDHRKNYMCLGCRMWGHTLKNCPSEFKSA--D 79
Query: 249 AQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFR 305
++C CG GH + C N +C++C+ GHL C N + P SC
Sbjct: 80 VKLCYNCGQPGHSLDKCPNPLKDGGSAFAECFLCKQRGHLSKNCPDNKNGIYPKGGSCKI 139
Query: 306 CGQLGH 311
C Q+ H
Sbjct: 140 CEQVTH 145
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 208 VCGSLEHGVRQCS--KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
V S +H +RQ + CF+CK H AK CP K + + +CL C GH + +C
Sbjct: 12 VASSSKHPLRQAGMKPGEGCFLCKSKDHIAKHCPTKSEKDHRKNYMCLGCRMWGHTLKNC 71
Query: 266 RNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+ + D+K CY C GH C + D CF C Q GH
Sbjct: 72 PSEFKSADVK--LCYNCGQPGHSLDKCPNPLKDGGSAFAECFLCKQRGH 118
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRK--KPCFVCGSLEHGVRQC--------SKAQDCFICKKGG 232
C C GH NC S K K C+ CG H + +C S +CF+CK+ G
Sbjct: 58 CLGCRMWGHTLKNCPSEFKSADVKLCYNCGQPGHSLDKCPNPLKDGGSAFAECFLCKQRG 117
Query: 233 HRAKDCPDKHKSGFQNAQVCLKC 255
H +K+CPD + C C
Sbjct: 118 HLSKNCPDNKNGIYPKGGSCKIC 140
>gi|410948894|ref|XP_003981162.1| PREDICTED: zinc finger CCHC domain-containing protein 9 [Felis
catus]
Length = 271
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C +A++ + C+ CGS EH + +C D CF+
Sbjct: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
C + GH ++ CPD K + + C CG H C S + D + V
Sbjct: 189 CGEMGHLSRSCPDNPKGLYADGGCCRLCGSVEHFKKDCPESQNSDRMVTV 238
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C+K GH DCP ++ +C +CG + H++ C+ +L
Sbjct: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 179
Query: 273 DLKEVQCYICRCFGHL--CCVNISDAVPGEVSCFR-CGQLGH 311
+ +C++C GHL C + + + C R CG + H
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGCCRLCGSVEH 221
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVP 298
K ++ +NA VC C GH + C + D+ CY C H C D
Sbjct: 119 KRQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPAL 178
Query: 299 GEVS---CFRCGQLGH 311
GE CF CG++GH
Sbjct: 179 GEFPFAKCFVCGEMGH 194
>gi|407736132|gb|AFU29445.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQNTNIMMQRGNFKGPRKIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|67423413|dbj|BAD99524.1| VASA RNA helicase [Moina macrocopa]
Length = 843
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 14/114 (12%)
Query: 182 TCYNCGEEGHMAVNCRSA-VKRKKPCFVCGSLEHGVRQCSK-------------AQDCFI 227
TCYNC +EGHM+ +C + V+R + C CG H R+C + CF
Sbjct: 255 TCYNCQQEGHMSKDCPNPKVERSRGCRNCGEDGHMARECPSKNGDGNGGGDRGGNRACFN 314
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYI 281
C + GH++KDC S C +C + H C D K + Y+
Sbjct: 315 CGEEGHQSKDCEKPRTSKGGGGGACFRCQSTDHMAKDCPEPNVGPDGKPRESYV 368
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 21/151 (13%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKR---KKPCFVCGSLEHGVRQC-------SKAQDCFIC 228
G + C+NCG+ HM+ C + K + C+ CG H R+C S C+ C
Sbjct: 200 GSRGCFNCGDTNHMSRECPNPKKEGNSRGTCYNCGDSGHMSRECPNPKKESSSRGTCYNC 259
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCF--- 285
++ GH +KDCP+ + ++ C CG+ GH C + + + CF
Sbjct: 260 QQEGHMSKDCPNPK---VERSRGCRNCGEDGHMARECPSKNGDGNGGGDRGGNRACFNCG 316
Query: 286 --GHL---CCVNISDAVPGEVSCFRCGQLGH 311
GH C + G +CFRC H
Sbjct: 317 EEGHQSKDCEKPRTSKGGGGGACFRCQSTDH 347
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 13/121 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVKR---KKPCFVCGSLEHGVRQCS-----KAQDCFICKKGGH 233
TCYNCG+ GHM+ C + K + C+ C H + C +++ C C + GH
Sbjct: 229 TCYNCGDSGHMSRECPNPKKESSSRGTCYNCQQEGHMSKDCPNPKVERSRGCRNCGEDGH 288
Query: 234 RAKDCPDK-----HKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
A++CP K + C CG+ GH C + C+ C+ H+
Sbjct: 289 MARECPSKNGDGNGGGDRGGNRACFNCGEEGHQSKDCEKPRTSKGGGGGACFRCQSTDHM 348
Query: 289 C 289
Sbjct: 349 A 349
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Query: 215 GVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
G RQ ++ CF C H +++CP+ K G + C CGDSGH C N
Sbjct: 194 GPRQGGGSRGCFNCGDTNHMSRECPNPKKEG-NSRGTCYNCGDSGHMSRECPNPKKESSS 252
Query: 275 KEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
+ CY C+ GH+ + V C CG+ GH
Sbjct: 253 RGT-CYNCQQEGHMSKDCPNPKVERSRGCRNCGEDGH 288
>gi|224120076|ref|XP_002318236.1| predicted protein [Populus trichocarpa]
gi|222858909|gb|EEE96456.1| predicted protein [Populus trichocarpa]
Length = 273
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 206 CFVCGSLEHGVRQCSKAQD------CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
CF+C + +H + C + + C +C+ GH K CP+K+ + + C CG+ G
Sbjct: 73 CFICKAKDHIAKLCPQKSEWERNKICLLCRHRGHSLKRCPNKNDETM-DQKSCYNCGEKG 131
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
H + C K C+IC GHL C N P C CG + H
Sbjct: 132 HSLSQCPQPREDGGTKFANCFICNERGHLSKDCPKNTRGIYPKGGCCKVCGGVTH 186
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSA---VKRKKPCFVCGSLEHGVRQC--------SKAQDCFICK 229
+ C C GH C + +K C+ CG H + QC +K +CFIC
Sbjct: 96 KICLLCRHRGHSLKRCPNKNDETMDQKSCYNCGEKGHSLSQCPQPREDGGTKFANCFICN 155
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ GH +KDCP + + C CG H C
Sbjct: 156 ERGHLSKDCPKNTRGIYPKGGCCKVCGGVTHLARDC 191
>gi|328834365|gb|AEB52782.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ VE ++ ++++K RGP+ C+NCG+EGH+A NCR+ RKK C+
Sbjct: 365 EAMSQVENANIMMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWK 414
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 415 CGKEGHQMKDCTERQANFLGK 435
>gi|429249208|gb|AFZ77648.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + + +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHTNIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQHTNIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|57648427|gb|AAW55908.1| zinc finger protein 7 [Trypanosoma cruzi]
Length = 101
Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 16/100 (16%)
Query: 179 GWQTCYNCGEEGHMAVNCRS---AVKRKKPCFVCGSLEHGVRQCSKAQD----------C 225
G + CYNCG GH++ C + + C+ CG + H R+C C
Sbjct: 2 GDRACYNCGRMGHLSRECPTRPPGAMGDRACYNCGRMGHLSRECPNRPAGGFRGVARGAC 61
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ C++ GH A+DCP+ G + C CG +GH +C
Sbjct: 62 YHCQQEGHLARDCPNAPPGG---ERACYNCGQTGHISRAC 98
Score = 46.2 bits (108), Expect = 0.020, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN--SYSLDDLKEVQCYIC 282
C+ C + GH +++CP + G + C CG GH C N + + CY C
Sbjct: 6 CYNCGRMGHLSRECPTR-PPGAMGDRACYNCGRMGHLSRECPNRPAGGFRGVARGACYHC 64
Query: 283 RCFGHLCCVNISDAVPG-EVSCFRCGQLGH 311
+ GHL + +A PG E +C+ CGQ GH
Sbjct: 65 QQEGHLA-RDCPNAPPGGERACYNCGQTGH 93
>gi|326417088|gb|ADZ73387.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E +T V+ ++ ++ R +GP+ C+NCG EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMTHVQQANVMMQRGNFKGPKRIK--------CFNCGREGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|255739511|gb|ACU31693.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K RGPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFRGPRRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 420
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 421 CTERQANFLGK 431
>gi|403343293|gb|EJY70972.1| Arginine methyltransferase-interacting protein, contains RING
Zn-finger [Oxytricha trifallax]
Length = 869
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C NC E GH+A C + KR C +CG H C++ + CF C K GH A C ++
Sbjct: 395 CRNCLEYGHIARECTNKTKRPN-CILCGKDTHDSFSCNE-KSCFKCNKIGHLASQCTER- 451
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC----RNSYSLDDLKEVQCYICRCFGHLCCV 291
N C +C GH C + +Y+ + ++C C GHL C+
Sbjct: 452 -----NVTRCNRCDLVGHKEARCLKVWKGNYNDSQMSLLRCIQCGSKGHLKCL 499
>gi|221222052|gb|ACM09687.1| Cellular nucleic acid-binding protein [Salmo salar]
Length = 140
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 60/140 (42%), Gaps = 29/140 (20%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----------CFVCGSLEHGVRQCSKAQD-CFICKKG 231
C+ CG GH NC A R + C+ CG H R C + +D C+ C +
Sbjct: 8 CFRCGRPGHWIKNCPEAGGRGRGRGRGRGKDLFCYRCGEQGHIARDCEQTEDACYNCHRS 67
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCV 291
GH ++DC N Q C CG GH C +V+CY C GH V
Sbjct: 68 GHISRDCDHA------NEQKCYSCGGFGHIQKLC---------DKVKCYRCGEIGH---V 109
Query: 292 NISDAVPGEVSCFRCGQLGH 311
+ + EV+C++CG GH
Sbjct: 110 AVQCSKASEVNCYKCGNTGH 129
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 26/113 (23%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKSGFQNAQ------VCLKCGDSGH----------DMFSC 265
+ +CF C + GH K+CP+ G + C +CG+ GH ++C
Sbjct: 5 SSECFRCGRPGHWIKNCPEAGGRGRGRGRGRGKDLFCYRCGEQGHIARDCEQTEDACYNC 64
Query: 266 RNSYSL----DDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
S + D E +CY C FGH+ + +V C+RCG++GH +
Sbjct: 65 HRSGHISRDCDHANEQKCYSCGGFGHI------QKLCDKVKCYRCGEIGHVAV 111
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
CYNC GH++ +C A ++K C+ CG H + C K + C+ C + GH A C
Sbjct: 60 ACYNCHRSGHISRDCDHANEQK--CYSCGGFGHIQKLCDKVK-CYRCGEIGHVAVQCSKA 116
Query: 242 HKSGFQNAQVCLKCGDSGH 260
+ C KCG++GH
Sbjct: 117 SEVN------CYKCGNTGH 129
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--CFICKKGGHRAKDC 238
Q CY+CG GH+ C K C+ CG + H QCSKA + C+ C GH AK+C
Sbjct: 80 QKCYSCGGFGHIQKLC-----DKVKCYRCGEIGHVAVQCSKASEVNCYKCGNTGHLAKEC 134
>gi|42558260|ref|NP_976048.1| zinc finger CCHC domain-containing protein 13 [Homo sapiens]
gi|71152962|sp|Q8WW36.1|ZCH13_HUMAN RecName: Full=Zinc finger CCHC domain-containing protein 13
gi|18088951|gb|AAH21176.1| Zinc finger, CCHC domain containing 13 [Homo sapiens]
gi|119619053|gb|EAW98647.1| zinc finger, CCHC domain containing 13, isoform CRA_b [Homo
sapiens]
gi|167774083|gb|ABZ92476.1| zinc finger, CCHC domain containing 13 [synthetic construct]
gi|190689697|gb|ACE86623.1| zinc finger, CCHC domain containing 13 protein [synthetic
construct]
gi|190691059|gb|ACE87304.1| zinc finger, CCHC domain containing 13 protein [synthetic
construct]
Length = 166
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 57/125 (45%), Gaps = 24/125 (19%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-----KAQDCFICKKGGHRAK 236
TCY CGE G A NC V C+ CG H + C + Q C+ C + GH A+
Sbjct: 46 TCYCCGESGRNAKNC---VLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLAR 102
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDA 296
DC D+ Q Q C CG GH D +V+CY C GH+ +N S A
Sbjct: 103 DC-DR-----QKEQKCYSCGKLGHIQ---------KDCAQVKCYRCGEIGHV-AINCSKA 146
Query: 297 VPGEV 301
PG++
Sbjct: 147 RPGQL 151
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
DP Q CY CG GH+A +C ++++ C+ CG L H + C++ + C+ C + GH
Sbjct: 82 DPKRERRQHCYTCGRLGHLARDCDR--QKEQKCYSCGKLGHIQKDCAQVK-CYRCGEIGH 138
Query: 234 RAKDC 238
A +C
Sbjct: 139 VAINC 143
>gi|194220088|ref|XP_001504692.2| PREDICTED: zinc finger CCHC domain-containing protein 9-like [Equus
caballus]
Length = 271
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 14/105 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C +A++ C+ CGS EH + +C D CF+
Sbjct: 129 VCFHCRKPGHGVADCPAALENHDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
C + GH ++ CPD K + + C CG H C S + D
Sbjct: 189 CGEMGHLSRSCPDNPKGLYADGGCCRLCGSVAHFQKDCPESQNSD 233
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C+K GH DCP ++ +C +CG + H++ C+ +L
Sbjct: 120 RQAAKKNAMVCFHCRKPGHGVADCPAALENHDMGTGICYRCGSTEHEITKCKAKVDPALG 179
Query: 273 DLKEVQCYICRCFGHL--CCVNISDAVPGEVSCFR-CGQLGH 311
+ +C++C GHL C + + + C R CG + H
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGCCRLCGSVAH 221
Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVP 298
K ++ +NA VC C GH + C + D+ CY C H C D
Sbjct: 119 KRQAAKKNAMVCFHCRKPGHGVADCPAALENHDMGTGICYRCGSTEHEITKCKAKVDPAL 178
Query: 299 GEVS---CFRCGQLGH 311
GE CF CG++GH
Sbjct: 179 GEFPFAKCFVCGEMGH 194
>gi|554837|gb|AAA44313.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 492
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ S+ ++ R +G R F C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 367 EAMSQVQQSNIMMQRGNFKGQRKFV-------KCFNCGKEGHIAKNCRAP--RKKGCWKC 417
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q FI K
Sbjct: 418 GKEGHQMKDCTERQANFIGK 437
Score = 37.7 bits (86), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 36/87 (41%), Gaps = 13/87 (14%)
Query: 182 TCYNCGEEGHMA---VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDC 238
C G GH A S V++ G+ + G R+ K CF C K GH AK+C
Sbjct: 351 ACQGVGGPGHKARVLAEAMSQVQQSNIMMQRGNFK-GQRKFVK---CFNCGKEGHIAKNC 406
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RAPRKKG------CWKCGKEGHQMKDC 427
>gi|225713264|gb|ACO12478.1| Zinc finger CCHC domain-containing protein 9 [Lepeophtheirus
salmonis]
Length = 394
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 41/102 (40%), Gaps = 17/102 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP--------CFVCGSLEHGVRQCS---------KAQD 224
CY C + GH +C A KK CF CGS+EH + C +
Sbjct: 246 VCYLCRKPGHFLSDCPEAKDGKKATKVGAVGSCFKCGSMEHTSKDCESKLKGEAAYRFAV 305
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
CFIC + GH AK CP K + C CG H CR
Sbjct: 306 CFICSETGHLAKACPSNPKGLYPKGGGCRFCGSVEHLKSECR 347
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 10/101 (9%)
Query: 220 SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQV-----CLKCGDSGHDMFSCRNSYSLD-D 273
SK C++C+K GH DCP+ K G + +V C KCG H C + +
Sbjct: 242 SKKMVCYLCRKPGHFLSDCPE-AKDGKKATKVGAVGSCFKCGSMEHTSKDCESKLKGEAA 300
Query: 274 LKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+ C+IC GHL C N P C CG + H
Sbjct: 301 YRFAVCFICSETGHLAKACPSNPKGLYPKGGGCRFCGSVEH 341
>gi|351706763|gb|EHB09682.1| Zinc finger CCHC domain-containing protein 9 [Heterocephalus
glaber]
Length = 271
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFIC 228
C++C + GH +C +A++ + C+ CGS EH + +C D CF+C
Sbjct: 130 CFHCRKPGHGVADCPAALENQDMGTGICYRCGSTEHEITKCRAKVDPALGEFPFAKCFVC 189
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
+ GH ++ CPD K + + C CG H C + LD + V
Sbjct: 190 GEMGHLSRSCPDNPKGLYADGGGCKVCGSVEHLKKDCPENQRLDRVVTV 238
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLDDLKEVQCYIC 282
CF C+K GH DCP ++ +C +CG + H++ CR +L + +C++C
Sbjct: 130 CFHCRKPGHGVADCPAALENQDMGTGICYRCGSTEHEITKCRAKVDPALGEFPFAKCFVC 189
Query: 283 RCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
GHL C N C CG + H
Sbjct: 190 GEMGHLSRSCPDNPKGLYADGGGCKVCGSVEH 221
>gi|448081812|ref|XP_004194980.1| Piso0_005509 [Millerozyma farinosa CBS 7064]
gi|359376402|emb|CCE86984.1| Piso0_005509 [Millerozyma farinosa CBS 7064]
Length = 179
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 66/173 (38%), Gaps = 54/173 (31%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK---------------------RKKPCFVCGSLEHGVRQC 219
+TCY CGE GH+A NC+ + +K C+ CG L H C
Sbjct: 7 RTCYKCGEVGHLADNCQQQQRLCYNCREPGHESNDCPQPKQASQKQCYSCGDLGHLQGDC 66
Query: 220 ---SKAQDCFICKKGGHRAKDC----------PDKHKSG-FQNAQVCLKCGDSGHDMFSC 265
S+ C+ C + GH +K C P K F A C KCG H C
Sbjct: 67 PTQSQGSKCYNCGQFGHISKQCTSASGQAAAAPKKANGARFSKAATCYKCGGPNHFARDC 126
Query: 266 RNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVS-------CFRCGQLGH 311
+ V+CY C GH IS P S C++CGQ+GH
Sbjct: 127 QAGL-------VKCYACGKTGH-----ISKECPAAASGDSLAKACYQCGQVGH 167
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 17/102 (16%)
Query: 183 CYNCGEEGHMAVNCRSA---------------VKRKKPCFVCGSLEHGVRQCSKAQ-DCF 226
CYNCG+ GH++ C SA + C+ CG H R C C+
Sbjct: 75 CYNCGQFGHISKQCTSASGQAAAAPKKANGARFSKAATCYKCGGPNHFARDCQAGLVKCY 134
Query: 227 ICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
C K GH +K+CP SG A+ C +CG GH C N+
Sbjct: 135 ACGKTGHISKECPAA-ASGDSLAKACYQCGQVGHISKECENA 175
>gi|326927837|ref|XP_003210095.1| PREDICTED: cellular nucleic acid-binding protein-like [Meleagris
gallopavo]
Length = 149
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 62/148 (41%), Gaps = 34/148 (22%)
Query: 183 CYNCGEEGHMAVNCRSA----------------VKRKKP--CFVCGSLEHGVRQCSKAQD 224
C+ CG GH A C + + P C+ CG H + C +D
Sbjct: 6 CFKCGRTGHWARECPTGIGRGRGMRSRGRGFQFMSSSLPDICYRCGESGHLAKDCDLQED 65
Query: 225 -CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C +GGH AKDC + + + Q C CG GH C D E +CY C
Sbjct: 66 ACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCG 116
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGH 311
FGH+ D +V C+RCG+ GH
Sbjct: 117 EFGHI----QKDCT--KVKCYRCGESGH 138
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 12/82 (14%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 66 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 125
Query: 239 PDKHKSGFQNAQVCLKCGDSGH 260
C +CG+SGH
Sbjct: 126 ---------TKVKCYRCGESGH 138
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDC 238
Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH A++C
Sbjct: 89 QCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGESGHLAREC 143
>gi|118426834|gb|ABK91168.1| gag protein [Human immunodeficiency virus 1]
Length = 172
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + LRGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNLRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|429249286|gb|AFZ77687.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + + +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQHTNIMMQKGIFKGPKRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G+ + K CF C K GH AK+C K G C KCG GH M C
Sbjct: 377 MQKGIFKGPKRIKCFNCGKEGHLAKNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|343420182|emb|CCD19181.1| nucleic acid binding protein, putative [Trypanosoma vivax Y486]
Length = 416
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 46/108 (42%), Gaps = 19/108 (17%)
Query: 206 CFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF G H + C+ CF C GH + +CP K ++C +C + GHDM C
Sbjct: 10 CFNRGHFGHSSQLCASKPVCFHCSMPGHTSTECPRK-----DMGRLCYRCKEPGHDMAKC 64
Query: 266 RNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTG 313
S QC++C GHL A EV C RC Q GH
Sbjct: 65 PQS--------PQCHMCNQTGHLV------AQCPEVLCNRCHQKGHMA 98
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 16/90 (17%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRK---KPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDC 238
C++C GH + C RK + C+ C H + +C ++ C +C + GH C
Sbjct: 28 VCFHCSMPGHTSTEC----PRKDMGRLCYRCKEPGHDMAKCPQSPQCHMCNQTGHLVAQC 83
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
P+ +C +C GH +C+ S
Sbjct: 84 PEV---------LCNRCHQKGHMASACKMS 104
>gi|255710801|ref|XP_002551684.1| KLTH0A05214p [Lachancea thermotolerans]
gi|238933061|emb|CAR21242.1| KLTH0A05214p [Lachancea thermotolerans CBS 6340]
Length = 396
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 72/186 (38%), Gaps = 32/186 (17%)
Query: 137 KEEQKVETADNGDEGVTTVEISDNIVLRKLLRGP-RYF---DPPDRGWQT---CYNCGEE 189
K A G + E+ N + LRG RYF DP D C NC +
Sbjct: 41 KSTTPTPGASEGILAPSIDEVDSNPEDLRYLRGKGRYFGVDDPSDPSLDAEPKCNNCSQR 100
Query: 190 GHMAVNCRSAVKRKKPCFVCGSLE-HGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQN 248
GH+ NC + C CG ++ H +QC KA C C + GH CP + + +
Sbjct: 101 GHLKRNCPHVI-----CAYCGIMDDHYTQQCPKAIKCANCGEEGHYRSQCPRQARRIY-- 153
Query: 249 AQVCLKCGDSGHDMFSCRN---SYSLDD--------LKEVQCYICRCFGHL---CCVNIS 294
C +C H C + SY L + ++ V CY C GH C + S
Sbjct: 154 ---CTECNSKNHARERCPSIWRSYYLRERTFHRTLHIERVFCYNCGHQGHFGDDCSMRRS 210
Query: 295 DAVPGE 300
VP E
Sbjct: 211 SKVPNE 216
>gi|301761700|ref|XP_002916268.1| PREDICTED: zinc finger CCHC domain-containing protein 9-like
[Ailuropoda melanoleuca]
gi|281350303|gb|EFB25887.1| hypothetical protein PANDA_004333 [Ailuropoda melanoleuca]
Length = 271
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C +A++ + C+ CGS EH + +C D CF+
Sbjct: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCRAKVDPALGEFPFAKCFV 188
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
C + GH ++ CPD K + + C CG H C S + D + V
Sbjct: 189 CGEMGHLSRSCPDNPKGLYADGGCCRLCGSVEHFKKDCPESQNSDRMVTV 238
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C+K GH DCP ++ +C +CG + H++ CR +L
Sbjct: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCRAKVDPALG 179
Query: 273 DLKEVQCYICRCFGHL--CCVNISDAVPGEVSCFR-CGQLGH 311
+ +C++C GHL C + + + C R CG + H
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGCCRLCGSVEH 221
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVP 298
K ++ +NA VC C GH + C + D+ CY C H C D
Sbjct: 119 KRQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCRAKVDPAL 178
Query: 299 GEVS---CFRCGQLGH 311
GE CF CG++GH
Sbjct: 179 GEFPFAKCFVCGEMGH 194
>gi|429249184|gb|AFZ77636.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + + +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQHTNIMMQKGIFKGPKRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G+ + K CF C K GH AK+C K G C KCG GH M C
Sbjct: 377 MQKGIFKGPKRIKCFNCGKEGHLAKNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|380022738|ref|XP_003695195.1| PREDICTED: uncharacterized protein LOC100868132 [Apis florea]
Length = 420
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNA--QVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYIC 282
CF C+K GH DCP+ G + A +C KCG + H F C+ + + + C+IC
Sbjct: 283 CFHCRKAGHNLSDCPE---LGSEQAGTGICYKCGSTEHTHFECKVTKPT-EYRYATCFIC 338
Query: 283 RCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
R GH+ C N P +C CG + H
Sbjct: 339 REQGHIAKQCPDNPKGIYPQGGACKICGDVTH 370
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKK---PCFVCGSLEHGVRQCS-------KAQDCFICKKG 231
C++C + GH +C + C+ CGS EH +C + CFIC++
Sbjct: 282 VCFHCRKAGHNLSDCPELGSEQAGTGICYKCGSTEHTHFECKVTKPTEYRYATCFICREQ 341
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
GH AK CPD K + C CGD H
Sbjct: 342 GHIAKQCPDNPKGIYPQGGACKICGDVTH 370
Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 27/73 (36%), Gaps = 11/73 (15%)
Query: 179 GWQTCYNCGEEGHMAVNCR---SAVKRKKPCFVCGSLEHGVRQCS--------KAQDCFI 227
G CY CG H C+ R CF+C H +QC + C I
Sbjct: 305 GTGICYKCGSTEHTHFECKVTKPTEYRYATCFICREQGHIAKQCPDNPKGIYPQGGACKI 364
Query: 228 CKKGGHRAKDCPD 240
C H KDCPD
Sbjct: 365 CGDVTHLKKDCPD 377
>gi|169848221|ref|XP_001830818.1| zinc knuckle family protein [Coprinopsis cinerea okayama7#130]
gi|116507987|gb|EAU90882.1| zinc knuckle family protein [Coprinopsis cinerea okayama7#130]
Length = 340
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 29/113 (25%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-----------RKKP--------CFVCGSLEHGVRQCSKA 222
TC+ C E+GH A +C A + KKP C+ CGS +H + +C K
Sbjct: 145 TCFVCREKGHAARDCPRASELAAAAGEPPAEGKKPAASSVVGICYRCGSTKHNLSKCKKP 204
Query: 223 QD---------CFICKKGGHRAKDCP-DKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ CF+C GH A CP +K K + N C CGD+ H C
Sbjct: 205 PNPENPLPYASCFVCSGKGHLASACPQNKTKGVYPNGGCCKICGDTSHLAKDC 257
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 20/107 (18%)
Query: 225 CFICKKGGHRAKDCP---------------DKHKSGFQNAQVCLKCGDSGHDMFSCRNSY 269
CF+C++ GH A+DCP K + +C +CG + H++ C+
Sbjct: 146 CFVCREKGHAARDCPRASELAAAAGEPPAEGKKPAASSVVGICYRCGSTKHNLSKCKKPP 205
Query: 270 SLDD-LKEVQCYICRCFGHL---CCVNISDAV-PGEVSCFRCGQLGH 311
+ ++ L C++C GHL C N + V P C CG H
Sbjct: 206 NPENPLPYASCFVCSGKGHLASACPQNKTKGVYPNGGCCKICGDTSH 252
>gi|373842358|gb|AEY77168.1| gag protein [Human immunodeficiency virus]
Length = 498
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + + +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSXVQHTNIMMQKGIFKGPKRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCNERQANFLGK 434
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + ++ G+ + K CF C K GH AK+C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSXVQHTNIM--MQKGIFKGPKRIKCFNCGKEGHLAKNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|259127927|gb|ACV94736.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHTNIMMQRGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQHTNIM--MQRGNFRGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|197690502|emb|CAP69991.1| gag polyprotein [Human immunodeficiency virus 1]
Length = 498
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQPANIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + +P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQVQPANIM--MQRGNFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|189239868|ref|XP_001807187.1| PREDICTED: similar to zinc finger protein [Tribolium castaneum]
Length = 438
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNA--QVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYIC 282
CF C+K GH +CP+ K +++ +C KCG + H F C+ + K QC+IC
Sbjct: 302 CFNCRKSGHNLSECPELGKEIAESSGTGICFKCGSTEHTHFECK-VVRGQEFKFAQCFIC 360
Query: 283 RCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
GH+ C N P +C CG + H
Sbjct: 361 HEQGHIARQCPDNARGLYPKGGACKVCGDVTH 392
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 39/93 (41%), Gaps = 13/93 (13%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP------CFVCGSLEHGVRQCS-------KAQDCFI 227
+ C+NC + GH C K CF CGS EH +C K CFI
Sbjct: 300 KVCFNCRKSGHNLSECPELGKEIAESSGTGICFKCGSTEHTHFECKVVRGQEFKFAQCFI 359
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C + GH A+ CPD + + C CGD H
Sbjct: 360 CHEQGHIARQCPDNARGLYPKGGACKVCGDVTH 392
>gi|409684237|gb|AFV34162.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQQTNIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|270011877|gb|EFA08325.1| hypothetical protein TcasGA2_TC005967 [Tribolium castaneum]
Length = 486
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 221 KAQDCFICKKGGHRAKDCPD--KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQ 278
K + CF C+K GH +CP+ K + +C KCG + H F C+ + K Q
Sbjct: 334 KKKVCFNCRKSGHNLSECPELGKEIAESSGTGICFKCGSTEHTHFECK-VVRGQEFKFAQ 392
Query: 279 CYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
C+IC GH+ C N P +C CG + H
Sbjct: 393 CFICHEQGHIARQCPDNARGLYPKGGACKVCGDVTH 428
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 39/93 (41%), Gaps = 13/93 (13%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP------CFVCGSLEHGVRQCS-------KAQDCFI 227
+ C+NC + GH C K CF CGS EH +C K CFI
Sbjct: 336 KVCFNCRKSGHNLSECPELGKEIAESSGTGICFKCGSTEHTHFECKVVRGQEFKFAQCFI 395
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C + GH A+ CPD + + C CGD H
Sbjct: 396 CHEQGHIARQCPDNARGLYPKGGACKVCGDVTH 428
>gi|366986513|ref|XP_003673023.1| hypothetical protein NCAS_0A00720 [Naumovozyma castellii CBS 4309]
gi|342298886|emb|CCC66632.1| hypothetical protein NCAS_0A00720 [Naumovozyma castellii CBS 4309]
Length = 161
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 20/102 (19%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP--------------CFVCGSLEHGVRQCSKAQD-C 225
Q CYNC + GH++ +C K ++P C+ CG H + C +++ C
Sbjct: 65 QRCYNCNQTGHISKDCPEPRKPREPRNNGRFGANRHGMTCYKCGEPNHMAKDCPQSESKC 124
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
+ C K GH ++DCPD K +VC C ++GH C N
Sbjct: 125 YSCGKFGHMSRDCPDGPKE-----KVCYNCNETGHISRDCPN 161
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 66/162 (40%), Gaps = 42/162 (25%)
Query: 181 QTCYNCGEEGHMAVNCRS---------------------AVKRKKPCFVCGSLEHGVRQC 219
+ C+ CG+ GH+A +C S V+ K+ C+ CG H +C
Sbjct: 4 KACFVCGKIGHLAEDCDSEKLCYNCNKPGHVQSECPEPRTVEHKQ-CYNCGETGHVKSEC 62
Query: 220 SKAQDCFICKKGGHRAKDCPDKHKS----------GFQNAQVCLKCGDSGHDMFSCRNSY 269
+ Q C+ C + GH +KDCP+ K ++ C KCG+ H C S
Sbjct: 63 T-VQRCYNCNQTGHISKDCPEPRKPREPRNNGRFGANRHGMTCYKCGEPNHMAKDCPQS- 120
Query: 270 SLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
E +CY C FGH+ P E C+ C + GH
Sbjct: 121 ------ESKCYSCGKFGHM--SRDCPDGPKEKVCYNCNETGH 154
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC---SKAQDCFICKKGGH 233
+R TCY CGE HMA +C + + C+ CG H R C K + C+ C + GH
Sbjct: 98 NRHGMTCYKCGEPNHMAKDCPQSESK---CYSCGKFGHMSRDCPDGPKEKVCYNCNETGH 154
Query: 234 RAKDCPD 240
++DCP+
Sbjct: 155 ISRDCPN 161
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 51/134 (38%), Gaps = 29/134 (21%)
Query: 203 KKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD----KHKSGFQ----------- 247
+K CFVCG + H C + C+ C K GH +CP+ +HK +
Sbjct: 3 QKACFVCGKIGHLAEDCDSEKLCYNCNKPGHVQSECPEPRTVEHKQCYNCGETGHVKSEC 62
Query: 248 NAQVCLKCGDSGHDMFSC---------RNSYSLDDLKE-VQCYICRCFGHLCCVNISDAV 297
Q C C +GH C RN+ + + CY C H+ D
Sbjct: 63 TVQRCYNCNQTGHISKDCPEPRKPREPRNNGRFGANRHGMTCYKCGEPNHM----AKDCP 118
Query: 298 PGEVSCFRCGQLGH 311
E C+ CG+ GH
Sbjct: 119 QSESKCYSCGKFGH 132
>gi|338224552|gb|AEI88159.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQHTNIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|345561223|gb|EGX44319.1| hypothetical protein AOL_s00193g47 [Arthrobotrys oligospora ATCC
24927]
Length = 180
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 21/99 (21%)
Query: 183 CYNCGEEGHMAVNC-------------------RSAVKRKKPCFVCGSLEHGVRQC-SKA 222
CY+CG+ GH+A NC ++ R C+ CG H R C ++A
Sbjct: 39 CYSCGQPGHLARNCPGNQRFQGGGFNGRNNMRGYASAPRPATCYKCGGPNHYARDCQAQA 98
Query: 223 QDCFICKKGGHRAKDCPDKHKSGFQNA-QVCLKCGDSGH 260
C+ C K GH ++DC + A + C +CG++GH
Sbjct: 99 MKCYACGKLGHISRDCTAPNGGPLNTAGKTCYRCGEAGH 137
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK---------AQDCFICKKGG 232
TCY CG H A +C++ + C+ CG L H R C+ + C+ C + G
Sbjct: 80 TCYKCGGPNHYARDCQAQAMK---CYACGKLGHISRDCTAPNGGPLNTAGKTCYRCGEAG 136
Query: 233 HRAKDCP 239
H ++DCP
Sbjct: 137 HISRDCP 143
>gi|117647247|ref|NP_663428.2| zinc finger CCHC domain-containing protein 9 [Mus musculus]
Length = 271
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C++ GH DCP +S +C +CG + H+M CR + +L
Sbjct: 120 RQAAKKNAMVCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPALG 179
Query: 273 DLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+ +C++C GHL C N SC CG + H
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNTKGVYADGGSCKLCGSVEH 221
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C + ++ + C+ CGS EH + +C D CF+
Sbjct: 129 VCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPALGEFPFAKCFV 188
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
C + GH ++ CPD K + + C CG H CR + + D + V
Sbjct: 189 CGEMGHLSRSCPDNTKGVYADGGSCKLCGSVEHFKKDCRENQNSDRIITV 238
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGH---LCCVNISDAV 297
K ++ +NA VC C GH + C D+ CY C H C N+ A+
Sbjct: 119 KRQAAKKNAMVCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPAL 178
Query: 298 PGEVS---CFRCGQLGH 311
GE CF CG++GH
Sbjct: 179 -GEFPFAKCFVCGEMGH 194
>gi|344272696|ref|XP_003408167.1| PREDICTED: zinc finger CCHC domain-containing protein 9-like
[Loxodonta africana]
Length = 270
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C +A++ + C+ CGS EH + +C D CF+
Sbjct: 128 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 187
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
C + GH ++ CPD K + + C CG H C S + D + V
Sbjct: 188 CGEMGHLSRSCPDNPKGLYADGGGCRLCGSVEHYKKDCPESKNSDQIVTV 237
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C+K GH DCP ++ +C +CG + H++ C+ +L
Sbjct: 119 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 178
Query: 273 DLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+ +C++C GHL C N C CG + H
Sbjct: 179 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCRLCGSVEH 220
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVP 298
K ++ +NA VC C GH + C + D+ CY C H C D
Sbjct: 118 KRQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPAL 177
Query: 299 GEVS---CFRCGQLGH 311
GE CF CG++GH
Sbjct: 178 GEFPFAKCFVCGEMGH 193
>gi|326417094|gb|ADZ73389.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ + ++ ++ R +GP+ F C+NCG EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHAQHANVMMQRGNFKGPKRFK--------CFNCGREGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|331231943|ref|XP_003328634.1| hypothetical protein PGTG_10593 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309307624|gb|EFP84215.1| hypothetical protein PGTG_10593 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 153
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 204 KPCFVCGSLEHGVRQC-SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDM 262
+ CF CG+L H QC ++++ C+ CK+ GH + CP+ G Q C CG GH
Sbjct: 7 RACFKCGALGHLAEQCPAESRLCYNCKQSGHESASCPNPRTGGVDGRQ-CFTCGGFGHLA 65
Query: 263 FSCRNSYSLDD-------LKEVQCYICRCFGHL 288
C ++ +L + +CY C FGH+
Sbjct: 66 ADCPSATTLGNRIAGVGSFGGTKCYTCGQFGHV 98
>gi|254667059|gb|ACT76462.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQQTNIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|254667000|gb|ACT76428.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G H A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 350 CQGVGGPSHKARVLAEAMSQAQQTNIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAPR 407
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 KKG------CWKCGKEGHQMKDC 424
>gi|225056156|gb|ACN80883.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 10/81 (12%)
Query: 150 EGVTTVEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V S ++++K RGP+ C+NCG+EGH+A NCR+ RKK C+
Sbjct: 364 EAMSQVTNSATVMMQKSNFRGPKRMV-------KCFNCGKEGHIAKNCRAP--RKKGCWK 414
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H +++C++ Q F+ K
Sbjct: 415 CGKEGHQMKECTERQANFLGK 435
Score = 37.4 bits (85), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 391 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKEC 425
>gi|115385340|ref|XP_001209217.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114196909|gb|EAU38609.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 227
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 27/121 (22%)
Query: 183 CYNCGEEGHMAVNCRSAV-------------------------KRKKPCFVCGSLEHGVR 217
CYNC + GH+A NC + R C+ CG H R
Sbjct: 65 CYNCSQPGHLARNCPAPASGVGRGAGAPRGGFNGGFRGGYGGYPRAATCYKCGGPNHFAR 124
Query: 218 QC-SKAQDCFICKKGGHRAKDCPDKHKSGFQNA-QVCLKCGDSGHDMFSCRNSYSLDDLK 275
C ++A C+ C K GH ++DC + +A +VC KC +GH C N+ + ++
Sbjct: 125 DCQAQAMKCYACGKLGHISRDCTAPNGGPLSSAGKVCYKCAQAGHISRDCPNNEAAAPVQ 184
Query: 276 E 276
+
Sbjct: 185 Q 185
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC---------SKAQDCFICKKGG 232
TCY CG H A +C++ + C+ CG L H R C S + C+ C + G
Sbjct: 112 TCYKCGGPNHFARDCQAQAMK---CYACGKLGHISRDCTAPNGGPLSSAGKVCYKCAQAG 168
Query: 233 HRAKDCPD 240
H ++DCP+
Sbjct: 169 HISRDCPN 176
>gi|112351428|gb|ABI15222.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
>gi|88853350|emb|CAJ01233.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K RGPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 372 NIMMQKGNFRGPRKIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 422 CTERQANFLGK 432
>gi|409684266|gb|AFV34188.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G H A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 350 CQGVGGPSHKARVLAEAMSQAQHANIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAPR 407
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 KKG------CWKCGKEGHQMKDC 424
>gi|113706814|gb|ABI36504.1| gag protein [Human immunodeficiency virus 1]
Length = 507
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG EH ++ CS+ Q F+ K
Sbjct: 397 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEEHQMKDCSERQANFLGK 441
>gi|322698317|gb|EFY90088.1| zinc knuckle transcription factor (CnjB), putative [Metarhizium
acridum CQMa 102]
Length = 452
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 55/138 (39%), Gaps = 18/138 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA-----QDCFICKKGGHRAK 236
+C NCG+EGH +C K C CG H C + +C C + GH K
Sbjct: 275 SCSNCGDEGHRIRDCPEPRVDKFACRNCGKSGHRASDCEEPPNLENMECRKCGEKGHMGK 334
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNIS 294
DCP ++ C CG GH C ++D+ V C C GH C
Sbjct: 335 DCPQG------GSRACRNCGQEGHIAKDCDQPRNMDN---VTCRNCEKTGHFSRDCPEPK 385
Query: 295 DAVPGEVSCFRCGQLGHT 312
D +V C C + GHT
Sbjct: 386 DWS--KVQCSNCQKFGHT 401
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 44/108 (40%), Gaps = 18/108 (16%)
Query: 177 DRGWQT----CYNCGEEGHMAVNCRSAVKR------KKPCFVCGSLEHGVRQCSKAQD-- 224
D GW C C +EGH NC + CF CG H C +D
Sbjct: 18 DSGWNQPQVKCGACSQEGHEEPNCPNQHTEAGNDDANNKCFNCGETGHRAADCPTPRDTA 77
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
C CKK GH +DCPDK VC CG GH +C N+ ++
Sbjct: 78 CRYCKKEGHMIRDCPDKP------PMVCDNCGQEGHVRKNCENARVIN 119
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 66/157 (42%), Gaps = 20/157 (12%)
Query: 131 QSVIVRKEEQKVETADNGDEGVTTVEISDNIVLRKLLR-----GPRYFD---PPDRGWQT 182
Q + +K + + ++ GDEG + + V + R G R D PP+
Sbjct: 263 QEKVEKKAQPAISCSNCGDEGHRIRDCPEPRVDKFACRNCGKSGHRASDCEEPPNLENME 322
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGHRAKD 237
C CGE+GHM +C R C CG H + C + ++ C C+K GH ++D
Sbjct: 323 CRKCGEKGHMGKDCPQGGSRA--CRNCGQEGHIAKDCDQPRNMDNVTCRNCEKTGHFSRD 380
Query: 238 CPD-KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDD 273
CP+ K S Q C C GH C+ DD
Sbjct: 381 CPEPKDWSKVQ----CSNCQKFGHTKVRCKEPLVADD 413
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 47/137 (34%), Gaps = 45/137 (32%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAK 236
D G + C NCGE GH + C KK A C C GHR +
Sbjct: 242 DTGLRKCQNCGELGHSSKFCTQEKVEKKA--------------QPAISCSNCGDEGHRIR 287
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDA 296
DCP+ F C CG SGH C +L++++
Sbjct: 288 DCPEPRVDKF----ACRNCGKSGHRASDCEEPPNLENME--------------------- 322
Query: 297 VPGEVSCFRCGQLGHTG 313
C +CG+ GH G
Sbjct: 323 ------CRKCGEKGHMG 333
>gi|218195961|gb|EEC78388.1| hypothetical protein OsI_18166 [Oryza sativa Indica Group]
Length = 988
Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 11/114 (9%)
Query: 178 RGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC---SKAQDCFICKKGGHR 234
R Q+C CG GH A NC G G + + +C+ CK+ GH
Sbjct: 848 RNLQSCNICGANGHSAQNCHVGADMDMQETSAGGSSMGNYNSIAGNGSSECYKCKQPGHY 907
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
A+DCP + G + C KC GH C + +C+ C+ GH
Sbjct: 908 ARDCPGQSTGGLE----CFKCKQPGHFSRDC----PVQSTGGSECFKCKQPGHF 953
Score = 51.2 bits (121), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC----SKAQDCFICKKGGHR 234
G CY C + GH A +C CF C H R C + +CF CK+ GH
Sbjct: 894 GSSECYKCKQPGHYARDCPGQSTGGLECFKCKQPGHFSRDCPVQSTGGSECFKCKQPGHF 953
Query: 235 AKDCP 239
A+DCP
Sbjct: 954 ARDCP 958
>gi|268560866|ref|XP_002646309.1| Hypothetical protein CBG12016 [Caenorhabditis briggsae]
Length = 785
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKDC 238
C+NCGEEGH + C + PC C + H C K + C C+K GH AKDC
Sbjct: 636 CHNCGEEGHFSRECPKPKQPNLPCRNCNEVGHFSTDCDKPKVPFGPCRNCQKEGHFAKDC 695
Query: 239 PDKHKSGFQNAQVCLKCGDSGH 260
P++ + + C +C + GH
Sbjct: 696 PEERVR-IEPTEPCRRCNEEGH 716
>gi|47117592|sp|Q8R1J3.1|ZCHC9_MOUSE RecName: Full=Zinc finger CCHC domain-containing protein 9
gi|19353581|gb|AAH24496.1| Zinc finger, CCHC domain containing 9 [Mus musculus]
Length = 273
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C++ GH DCP +S +C +CG + H+M CR + +L
Sbjct: 120 RQAAKKNAMVCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPALG 179
Query: 273 DLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+ +C++C GHL C N SC CG + H
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNTKGVYADGGSCKLCGSVEH 221
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C + ++ + C+ CGS EH + +C D CF+
Sbjct: 129 VCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPALGEFPFAKCFV 188
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
C + GH ++ CPD K + + C CG H CR + + D + V
Sbjct: 189 CGEMGHLSRSCPDNTKGVYADGGSCKLCGSVEHFKKDCRENQNSDRIITV 238
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGH---LCCVNISDAV 297
K ++ +NA VC C GH + C D+ CY C H C N+ A+
Sbjct: 119 KRQAAKKNAMVCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPAL 178
Query: 298 PGEVS---CFRCGQLGH 311
GE CF CG++GH
Sbjct: 179 -GEFPFAKCFVCGEMGH 194
>gi|390347808|ref|XP_789049.2| PREDICTED: uncharacterized protein LOC584076 [Strongylocentrotus
purpuratus]
Length = 278
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 183 CYNCGEEGHMAVNCRSAV----KRKKPCFVCGSLEHGVRQCSKAQD----------CFIC 228
C++C + GH +C + + C+ CGS EH V +C+ D CFIC
Sbjct: 97 CFHCRQPGHGVADCPQMLGDVEQGTGICYRCGSTEHDVSKCNAKVDKKLGDFPYAKCFIC 156
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY 269
+ GH ++ CPD + + + C +CG H ++C +
Sbjct: 157 GQTGHLSRMCPDNPRGLYPSGGGCKECGSMEHKWWNCPRLF 197
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 217 RQCSKAQD--CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ KA + CF C++ GH DCP Q +C +CG + HD+ C L
Sbjct: 87 RQKKKADNMMCFHCRQPGHGVADCPQMLGDVEQGTGICYRCGSTEHDVSKCNAKVDKKLG 146
Query: 273 DLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
D +C+IC GHL C N P C CG + H
Sbjct: 147 DFPYAKCFICGQTGHLSRMCPDNPRGLYPSGGGCKECGSMEH 188
>gi|331029872|gb|AEC50064.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQTQHANIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|331029870|gb|AEC50063.1| gag protein [Human immunodeficiency virus 1]
gi|331029874|gb|AEC50065.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQTQHANIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|327263026|ref|XP_003216322.1| PREDICTED: zinc finger CCHC domain-containing protein 9-like
[Anolis carolinensis]
Length = 262
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 14/105 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C + ++ + CF CGS EH + +C D CFI
Sbjct: 120 VCFHCRQPGHGVADCPAVLESQDMGTGICFRCGSTEHEISKCRAKIDPALGEFPYAKCFI 179
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
C + GH ++ CPD K + + C CG H C + S D
Sbjct: 180 CGEMGHLSRSCPDNPKGLYAHGGSCRICGSVEHFKRDCPENQSSD 224
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLDDLKEVQC 279
A CF C++ GH DCP +S +C +CG + H++ CR +L + +C
Sbjct: 118 AMVCFHCRQPGHGVADCPAVLESQDMGTGICFRCGSTEHEISKCRAKIDPALGEFPYAKC 177
Query: 280 YICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+IC GHL C N SC CG + H
Sbjct: 178 FICGEMGHLSRSCPDNPKGLYAHGGSCRICGSVEH 212
>gi|17532917|ref|NP_494168.1| Protein F07E5.5 [Caenorhabditis elegans]
gi|351065298|emb|CCD61275.1| Protein F07E5.5 [Caenorhabditis elegans]
Length = 384
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 182 TCYNCGEEGHMAVNC--RSAVKRKKPCFVCGSLEHGVRQCSKA-------QDCFICKKGG 232
C++C E GH +C R++ CF CGS+EH + +C K CF+CK+ G
Sbjct: 230 ACFHCREPGHRLADCPKRNSSSSDGVCFKCGSMEHSIHECKKKGVKGFPYATCFVCKQVG 289
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
H ++DC + + C CG + H C
Sbjct: 290 HISRDCHQNVNGVYPDGGCCNVCGANTHLRRDC 322
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRC 284
CF C++ GHR DCP ++ S VC KCG H + C+ + C++C+
Sbjct: 231 CFHCREPGHRLADCPKRNSSSSDG--VCFKCGSMEHSIHECKKK-GVKGFPYATCFVCKQ 287
Query: 285 FGHL---CCVNISDAVPGEVSCFRCGQLGH 311
GH+ C N++ P C CG H
Sbjct: 288 VGHISRDCHQNVNGVYPDGGCCNVCGANTH 317
>gi|429249308|gb|AFZ77698.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + + +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQQTNIMMQKGIFKGPKRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 415 GKEGHQMKDCTERQANFL 432
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G+ + K CF C K GH AK+C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQQTNIM--MQKGIFKGPKRIKCFNCGKEGHLAKNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|148469906|gb|ABQ65894.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQNASIMMQRSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 413 GKEGHQMKDCTERQANFLGR 432
>gi|119361806|gb|ABL66834.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSNVQHTNIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
>gi|118426970|gb|ABK91236.1| gag protein [Human immunodeficiency virus 1]
Length = 155
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 2 EAMSQVQNTNIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 51
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 52 GKEGHQMKDCTERQANFLGK 71
>gi|112351468|gb|ABI15258.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
>gi|409684227|gb|AFV34153.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKG 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQQTNIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKGC 424
>gi|395825575|ref|XP_003786003.1| PREDICTED: zinc finger CCHC domain-containing protein 9 [Otolemur
garnettii]
Length = 271
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C +A++ + C+ CGS EH + +C D CF+
Sbjct: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPAFGEFPFAKCFV 188
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
C + GH ++ CPD K + + C CG H C S + D + V
Sbjct: 189 CGEMGHLSRSCPDNPKGLYADGGGCKLCGSVKHLKKDCPESQNSDQMVTV 238
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C+K GH DCP ++ +C +CG + H++ C+ +
Sbjct: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPAFG 179
Query: 273 DLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+ +C++C GHL C N C CG + H
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVKH 221
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVP 298
K ++ +NA VC C GH + C + D+ CY C H C D
Sbjct: 119 KRQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPAF 178
Query: 299 GEVS---CFRCGQLGH 311
GE CF CG++GH
Sbjct: 179 GEFPFAKCFVCGEMGH 194
>gi|11066489|gb|AAG28605.1|AF259954_2 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
gi|11066499|gb|AAG28614.1|AF259955_2 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKK-GGHRAKDCPDK 241
C+NCG EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ + + K
Sbjct: 390 CFNCGREGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLRENLAFQQGKAGEFS 447
Query: 242 HKSGFQNAQVCLKCGDSGHD 261
+ N+ K GD G D
Sbjct: 448 SEQTRANSPTSRKLGDGGRD 467
Score = 39.3 bits (90), Expect = 2.3, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C + GH A++C K G C KCG GH M C
Sbjct: 377 MQRGNFKGQKRIKCFNCGREGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|403169101|ref|XP_003328636.2| hypothetical protein PGTG_10595 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375167802|gb|EFP84217.2| hypothetical protein PGTG_10595 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 227
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 206 CFVCGSLEHGVRQC-SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFS 264
CF CG+L H QC ++++ C+ CK+ GH + CP+ G Q C CG GH
Sbjct: 9 CFKCGALGHLAEQCPAESRLCYNCKQSGHESASCPNPRTGGVDGRQ-CFTCGGFGHLAAD 67
Query: 265 CRNSYSLDD-------LKEVQCYICRCFGHL 288
C ++ +L + +CY C FGH+
Sbjct: 68 CPSATTLGNRIAGVGSFGGTKCYTCGQFGHV 98
>gi|147744220|gb|ABQ51045.1| gag protein [Human immunodeficiency virus 1]
Length = 180
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E +++V+ + ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 53 EAMSSVQQENVMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 102
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 103 GKEGHQMKDCTERQANFLGK 122
>gi|429249180|gb|AFZ77634.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G+ + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQKGIFKGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|119499962|ref|XP_001266738.1| zinc knuckle transcription factor (CnjB), putative [Neosartorya
fischeri NRRL 181]
gi|119414903|gb|EAW24841.1| zinc knuckle transcription factor (CnjB), putative [Neosartorya
fischeri NRRL 181]
Length = 491
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 54/142 (38%), Gaps = 17/142 (11%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKG 231
DR C NC GH A +C + C CGS EH C + +C C +
Sbjct: 302 DRVEVKCVNCNASGHRARDCTEPRVDRFACRNCGSPEHKAADCPNPRSAEGVECKRCNEM 361
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC-- 289
GH AKDCP + C CG H C D+ V C C GH
Sbjct: 362 GHFAKDCPQAPAP-----RTCRNCGSEDHMARDCDKPR---DVSTVTCRNCEEVGHFSRD 413
Query: 290 CVNISDAVPGEVSCFRCGQLGH 311
C D +V C CG++GH
Sbjct: 414 CPQKKDW--SKVKCNNCGEMGH 433
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 11/94 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKDC 238
C NCG + H A C ++ CF CG H +C+K + C IC K GH A +C
Sbjct: 67 CRNCGGDSHFARECPEP-RKGMACFNCGEEGHSKAECTKPRVFKGPCRICSKEGHPAAEC 125
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
PD+ VC C GH C + D
Sbjct: 126 PDRP------PDVCKNCQSEGHKTIECTENRKFD 153
>gi|328785464|ref|XP_001121478.2| PREDICTED: hypothetical protein LOC725656 [Apis mellifera]
Length = 437
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQ--VCLKCGDSGHDMFSCRNSYSLDDLKEVQCYIC 282
CF C+K GH DCP+ G + A +C KCG + H F C+ + + + C+IC
Sbjct: 315 CFHCRKAGHNLSDCPE---LGSEQAGTGICYKCGSTEHTHFECKVTKPT-EYRYATCFIC 370
Query: 283 RCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
R GH+ C N P +C CG + H
Sbjct: 371 REQGHISKQCPDNPKGIYPQGGACKICGDVTH 402
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKK---PCFVCGSLEHGVRQCS-------KAQDCFICKKGG 232
C++C + GH +C + C+ CGS EH +C + CFIC++ G
Sbjct: 315 CFHCRKAGHNLSDCPELGSEQAGTGICYKCGSTEHTHFECKVTKPTEYRYATCFICREQG 374
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
H +K CPD K + C CGD H
Sbjct: 375 HISKQCPDNPKGIYPQGGACKICGDVTH 402
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 30/81 (37%), Gaps = 11/81 (13%)
Query: 179 GWQTCYNCGEEGHMAVNCR---SAVKRKKPCFVCGSLEHGVRQCS--------KAQDCFI 227
G CY CG H C+ R CF+C H +QC + C I
Sbjct: 337 GTGICYKCGSTEHTHFECKVTKPTEYRYATCFICREQGHISKQCPDNPKGIYPQGGACKI 396
Query: 228 CKKGGHRAKDCPDKHKSGFQN 248
C H KDCPD K QN
Sbjct: 397 CGDVTHLKKDCPDLIKEKEQN 417
>gi|429249246|gb|AFZ77667.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NILMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQQTNIL--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|371559454|gb|AEX36638.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|227057850|gb|ACP18904.1| gag protein [Human immunodeficiency virus 1]
Length = 505
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 11/73 (15%)
Query: 158 SDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SGNILMQRSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGQEGHQM 418
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 419 KDCTERQANFLGK 431
>gi|429249188|gb|AFZ77638.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSHAQQTNIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|334884420|gb|AEH21321.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 502
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQQANVMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 37.4 bits (85), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + V ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARILAEAMSQVQQANVM--MQRGNFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|259127946|gb|ACV94744.1| gag protein, partial [Human immunodeficiency virus 1]
gi|259127965|gb|ACV94753.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 495
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQQPNIMMQRGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + ++P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQQPNIM---MQRGNFRGPKRIKCFNCGKEGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKDC 424
>gi|121708529|ref|XP_001272160.1| zinc knuckle transcription factor (CnjB), putative [Aspergillus
clavatus NRRL 1]
gi|119400308|gb|EAW10734.1| zinc knuckle transcription factor (CnjB), putative [Aspergillus
clavatus NRRL 1]
Length = 488
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 54/137 (39%), Gaps = 17/137 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHRAKD 237
C NC GH A +C + + C CG+ +H C + +C C + GH AKD
Sbjct: 306 CVNCNASGHRARDCPEVRRDRYACRNCGAPDHKAADCPNPRSAEGVECKRCNEVGHFAKD 365
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISD 295
CP + C CG H C D+ V C C GH C D
Sbjct: 366 CPQAPPP-----RTCRNCGSEDHIARDCDKPR---DVSTVTCRNCDEVGHFSRDCTKKKD 417
Query: 296 AVPGEVSCFRCGQLGHT 312
+V C CG++GHT
Sbjct: 418 W--SKVKCNNCGEMGHT 432
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 40/94 (42%), Gaps = 11/94 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKDC 238
C NCG E H A C ++ CF CG H +C+K + C IC K GH A +C
Sbjct: 65 CRNCGNESHFAREC-PEPRKGMACFNCGEEGHSKAECTKPRVFKGSCRICNKEGHPAAEC 123
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
PD+ VC C GH C + D
Sbjct: 124 PDRP------PDVCKNCQSEGHRTIECTENRKFD 151
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGHRAKD 237
C C E GH A +C A + C CGS +H R C K +D C C + GH ++D
Sbjct: 353 CKRCNEVGHFAKDCPQAPPPRT-CRNCGSEDHIARDCDKPRDVSTVTCRNCDEVGHFSRD 411
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
C K + C CG+ GH + C + S DDL
Sbjct: 412 CTKKKD---WSKVKCNNCGEMGHTIKRCPQATS-DDL 444
>gi|391339398|ref|XP_003744037.1| PREDICTED: CCHC-type zinc finger protein CG3800-like [Metaseiulus
occidentalis]
Length = 182
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 59/130 (45%), Gaps = 23/130 (17%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-DCFICKKGGHRAKDCPDK 241
CY C GH A +C+ R C+ C H + C + + C+ C K GH A++CP+
Sbjct: 54 CYKCNRLGHFARDCKETEDR---CYRCNGTGHIAKDCQQGEMSCYNCGKTGHIARECPEV 110
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEV 301
KS C +CG GH C +D + +CY C FGH S P +
Sbjct: 111 DKS-------CYRCGKPGHIFRDC-----PEDGQ--KCYTCGRFGHF-----SRECPLDR 151
Query: 302 SCFRCGQLGH 311
C+ CGQ GH
Sbjct: 152 RCYVCGQGGH 161
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 17/78 (21%)
Query: 178 RGWQTCYNCGEEGHMAVNC----RSAVKRKKP-------------CFVCGSLEHGVRQCS 220
+G +CYNCG+ GH+A C +S + KP C+ CG H R+C
Sbjct: 89 QGEMSCYNCGKTGHIARECPEVDKSCYRCGKPGHIFRDCPEDGQKCYTCGRFGHFSRECP 148
Query: 221 KAQDCFICKKGGHRAKDC 238
+ C++C +GGH +++C
Sbjct: 149 LDRRCYVCGQGGHISREC 166
>gi|332021649|gb|EGI62008.1| Zinc finger CCHC domain-containing protein 9 [Acromyrmex
echinatior]
Length = 421
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR-NSYSLDDLKEVQCYICR 283
CF C+K GH DCP+ +S +C KCG + H F C+ N S+ + +C+ICR
Sbjct: 284 CFNCRKSGHNLSDCPELDRSEACTG-ICFKCGSTEHTHFECKVNKDSI--YRYAKCFICR 340
Query: 284 CFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
GH+ C N P C CG + H
Sbjct: 341 EQGHIAMQCPDNPKGVYPHGGCCKICGAVTH 371
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKK---PCFVCGSLEHGVRQCSKAQD-------CFICKKG 231
C+NC + GH +C + + CF CGS EH +C +D CFIC++
Sbjct: 283 VCFNCRKSGHNLSDCPELDRSEACTGICFKCGSTEHTHFECKVNKDSIYRYAKCFICREQ 342
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
GH A CPD K + + C CG H
Sbjct: 343 GHIAMQCPDNPKGVYPHGGCCKICGAVTH 371
>gi|254667095|gb|ACT76486.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGREGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C + GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQQTNIM--MQKGIFKGPKRIKCFNCGREGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|451312306|gb|AGF34615.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSNVQHTNIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|373842344|gb|AEY77161.1| gag protein [Human immunodeficiency virus]
Length = 498
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G+ + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQKGIFKGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|331029866|gb|AEC50061.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQHTNIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|242031259|gb|ACS77627.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V + ++ R +GPR C+NCG+EGHMA NCR+ RKK C+ C
Sbjct: 345 EAMSQVNNATVLMQRNNFKGPRRIV-------KCFNCGKEGHMARNCRAP--RKKGCWKC 395
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 396 GQEGHQMKDCTERQANFLGK 415
>gi|409684256|gb|AFV34179.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + + +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQQANIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKAKVLAEAMSQVQQANIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|407735809|gb|AFU29171.1| gag protein [Human immunodeficiency virus 1]
Length = 1433
Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKK-GGHRAKDCPDK 241
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F + + K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCNERQANFFRENLAFQQGKAREFS 447
Query: 242 HKSGFQNAQVCLKCGDSGHDMF 263
+ N+ + GD G D F
Sbjct: 448 SEQTRANSPTSRRLGDGGRDKF 469
Score = 40.0 bits (92), Expect = 1.4, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G H A A+ + + V ++ G + + CF C K GH A++C
Sbjct: 350 CQGVGGPSHKARVLAEAMSQAQQTTVM--MQRGNFKGQRRIKCFNCGKEGHLARNCRAPR 407
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 KKG------CWKCGKEGHQMKDC 424
>gi|124389764|gb|ABN11064.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 9/69 (13%)
Query: 161 IVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS 220
++ R +GPR F C+NCG+EGH+A NCR+ RKK C+ CG H +++C+
Sbjct: 378 MMQRGNFKGPRKFI-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKECT 428
Query: 221 KAQDCFICK 229
+ Q F+ K
Sbjct: 429 ERQANFLGK 437
Score = 37.4 bits (85), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 15/73 (20%)
Query: 193 AVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVC 252
A N +A+ ++ F G R+ K CF C K GH AK+C K G C
Sbjct: 370 ATNANAAIMMQRGNF------KGPRKFIK---CFNCGKEGHIAKNCRAPRKKG------C 414
Query: 253 LKCGDSGHDMFSC 265
KCG GH M C
Sbjct: 415 WKCGKEGHQMKEC 427
>gi|74052533|gb|AAZ95218.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|328863685|gb|EGG12784.1| hypothetical protein MELLADRAFT_101315 [Melampsora larici-populina
98AG31]
Length = 385
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 30/141 (21%)
Query: 178 RGWQ-----TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSL-EHGVRQCSKAQDCFICKKG 231
R W+ TC C E H A NC + C CG++ EH R C + CF C
Sbjct: 72 RYWKEPTGITCTICQEPDHSAKNCEHEL-----CLTCGAIDEHITRLCPVSLVCFACGSR 126
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCV 291
GH ++ CP ++ + C+KCG + H +C + I RC+ +
Sbjct: 127 GHLSRHCPSSSETRIL-GKDCIKCGSTNHLSLNCPS-------------IWRCYEE---I 169
Query: 292 NISDAVPGEV--SCFRCGQLG 310
I + P + SC+ CG G
Sbjct: 170 KIPNRKPKSLVPSCYNCGDNG 190
>gi|118426894|gb|ABK91198.1| gag protein [Human immunodeficiency virus 1]
Length = 168
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|407040390|gb|EKE40104.1| zinc finger protein containing CCHC type domain containing protein
[Entamoeba nuttalli P19]
Length = 164
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCSKAQD-------CFICKKGG 232
+ C+ C + GH NC K + C+ CGS +H +R C + + CF+C + G
Sbjct: 14 KICFYCRQPGHCLKNCPKKAKGEDSICYNCGSHDHILRDCPEPRTGKLAFSTCFVCHQMG 73
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
H ++DCP+ K + C CGD H C N
Sbjct: 74 HISRDCPNNPKGIYPQGGGCRYCGDVNHFAKDCPN 108
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRC 284
CF C++ GH K+CP K K +C CG H + C + L C++C
Sbjct: 16 CFYCRQPGHCLKNCPKKAKG---EDSICYNCGSHDHILRDCPEPRT-GKLAFSTCFVCHQ 71
Query: 285 FGHL---CCVNISDAVPGEVSCFRCGQLGH 311
GH+ C N P C CG + H
Sbjct: 72 MGHISRDCPNNPKGIYPQGGGCRYCGDVNH 101
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 183 CYNCGEEGHMAVNC---RSAVKRKKPCFVCGSLEHGVRQCS--------KAQDCFICKKG 231
CYNCG H+ +C R+ CFVC + H R C + C C
Sbjct: 40 CYNCGSHDHILRDCPEPRTGKLAFSTCFVCHQMGHISRDCPNNPKGIYPQGGGCRYCGDV 99
Query: 232 GHRAKDCPDKHK 243
H AKDCP+K K
Sbjct: 100 NHFAKDCPNKRK 111
>gi|242089287|ref|XP_002440476.1| hypothetical protein SORBIDRAFT_09g001570 [Sorghum bicolor]
gi|241945761|gb|EES18906.1| hypothetical protein SORBIDRAFT_09g001570 [Sorghum bicolor]
Length = 669
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 63/162 (38%), Gaps = 47/162 (29%)
Query: 181 QTCYNCGEEGHMAVNCR----SAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKG 231
+TCY CG GH + +C S V++ C+ CG+ H C S+A+ C+ C
Sbjct: 391 RTCYECGTPGHFSSSCPNKKDSDVRK---CYECGTPGHLSSACPNKKDSEARKCYECGTP 447
Query: 232 GHRAKDCPDKHKSGF----------------QNAQVCLKCGDSGHDMFSCRN-------- 267
GH + CP+K S + + C +CG GH SC N
Sbjct: 448 GHLSSACPNKKDSDVISDEKDANANSAIAASKKRRTCYECGIPGHLSSSCPNKKDSEFIS 507
Query: 268 --------SYSLDDLKEVQCYICRCFGHL---CCVNISDAVP 298
S + K CY C GHL C SD+VP
Sbjct: 508 DEKKTNVDSATAPSKKRRTCYECGTPGHLSSACPNKRSDSVP 549
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 47/111 (42%), Gaps = 25/111 (22%)
Query: 220 SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQC 279
SK + C+ C GH + CP+K S + + C +CG GH +C N D + +C
Sbjct: 388 SKNRTCYECGTPGHFSSSCPNKKDS---DVRKCYECGTPGHLSSACPNK---KDSEARKC 441
Query: 280 YICRCFGHL--CCVNI--SDAVPGEV---------------SCFRCGQLGH 311
Y C GHL C N SD + E +C+ CG GH
Sbjct: 442 YECGTPGHLSSACPNKKDSDVISDEKDANANSAIAASKKRRTCYECGIPGH 492
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 14/129 (10%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVC----GSLEHGVRQCSKAQDCFICKKGGHRAK 236
+TCY CG GH++ +C + +K F+ +++ K + C+ C GH +
Sbjct: 482 RTCYECGIPGHLSSSCPN---KKDSEFISDEKKTNVDSATAPSKKRRTCYECGTPGHLSS 538
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN-----SYSLDDLKEVQCYICRCFGHL--C 289
CP+K N + + + S S S K +CY C GHL
Sbjct: 539 ACPNKRSDSVPNNREPVDDAKPATTIMSEETKVGDESNSAASKKRRKCYECGISGHLSSA 598
Query: 290 CVNISDAVP 298
C N A P
Sbjct: 599 CPNKKAAEP 607
>gi|118426968|gb|ABK91235.1| gag protein [Human immunodeficiency virus 1]
Length = 120
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 2 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 51
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 52 GKEGHQMKDCTERQANFLGK 71
>gi|426236129|ref|XP_004012026.1| PREDICTED: zinc finger CCHC domain-containing protein 9-like [Ovis
aries]
Length = 180
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 14/111 (12%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CF 226
+ C++C + GH +C +A++ ++ C+ CGS EH + +C D CF
Sbjct: 37 KVCFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCF 96
Query: 227 ICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
+C + GH ++ CPD K + + C CG H C S + D + V
Sbjct: 97 VCGEMGHLSRSCPDNPKGLYADGGGCRLCGSVEHMKKDCPKSQNSDRMVTV 147
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLDDLKEVQCYIC 282
CF C++ GH DCP ++ +C +CG + H++ C+ +L + +C++C
Sbjct: 39 CFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVC 98
Query: 283 RCFGHL 288
GHL
Sbjct: 99 GEMGHL 104
>gi|242031243|gb|ACS77619.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V + ++ R +GPR C+NCG+EGHMA NCR+ RKK C+ C
Sbjct: 345 EAMSQVNNATVLMQRNNFKGPRRIV-------KCFNCGKEGHMAKNCRAP--RKKGCWKC 395
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 396 GQEGHQMKDCTERQANFLGK 415
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 371 CFNCGKEGHMAKNCRAPRKKG------CWKCGQEGHQMKDC 405
>gi|406867883|gb|EKD20920.1| zinc knuckle protein [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 198
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 68/181 (37%), Gaps = 57/181 (31%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK------------ 221
D P RG CYNCG EGHM+ C K K C+ CG H R C+
Sbjct: 25 DCPTRGPAKCYNCGGEGHMSRECPDGPKDKT-CYKCGQPGHISRDCTNPSSDGAGRGGFG 83
Query: 222 -----AQDCFICKKGGHRAKDCPD----------------------KHKSGFQNAQVCLK 254
+Q+C+ C K GH A++CP+ Q Q C
Sbjct: 84 GQGGGSQECYKCSKIGHIARNCPEAGGYGGGGYGGQSGYGGGQGGYGGGGRAQGGQTCYS 143
Query: 255 CGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPG----EVSCFRCGQLG 310
CG GH S D + +CY C GHL S P E +C++C Q G
Sbjct: 144 CGGYGH--------MSRDCTQGQKCYNCGEVGHL-----SRDCPSENNNERTCYKCKQPG 190
Query: 311 H 311
H
Sbjct: 191 H 191
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 44/113 (38%), Gaps = 30/113 (26%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKK--------------------------PCFVCGSLEH 214
Q CY C + GH+A NC A C+ CG H
Sbjct: 90 QECYKCSKIGHIARNCPEAGGYGGGGYGGQSGYGGGQGGYGGGGRAQGGQTCYSCGGYGH 149
Query: 215 GVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
R C++ Q C+ C + GH ++DCP ++ N + C KC GH C N
Sbjct: 150 MSRDCTQGQKCYNCGEVGHLSRDCPSENN----NERTCYKCKQPGHVQAQCPN 198
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 65/171 (38%), Gaps = 44/171 (25%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC---SKAQDCFICKKG 231
PP RG CYNCG+ H A +C + K C+ CG H R+C K + C+ C +
Sbjct: 8 PPPRG---CYNCGDASHQARDCPTRGPAK--CYNCGGEGHMSRECPDGPKDKTCYKCGQP 62
Query: 232 GHRAKDCPDKHK---------SGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQ---- 278
GH ++DC + +Q C KC GH +C +
Sbjct: 63 GHISRDCTNPSSDGAGRGGFGGQGGGSQECYKCSKIGHIARNCPEAGGYGGGGYGGQSGY 122
Query: 279 ------------------CYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
CY C +GH+ D G+ C+ CG++GH
Sbjct: 123 GGGQGGYGGGGRAQGGQTCYSCGGYGHM----SRDCTQGQ-KCYNCGEVGH 168
>gi|67478497|ref|XP_654640.1| zinc finger protein containing CCHC type domain [Entamoeba
histolytica HM-1:IMSS]
gi|56471707|gb|EAL49254.1| zinc finger protein containing CCHC type domain [Entamoeba
histolytica HM-1:IMSS]
gi|449708078|gb|EMD47605.1| zinc finger protein containing CCHC type domain containing protein
[Entamoeba histolytica KU27]
Length = 164
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCSKAQD-------CFICKKGG 232
+ C+ C + GH NC K + C+ CGS +H +R C + + CF+C + G
Sbjct: 14 KICFYCRQPGHCLKNCPKKAKGEDSICYNCGSHDHILRDCPEPRTGKLAFSTCFVCHQMG 73
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
H ++DCP+ K + C CGD H C N
Sbjct: 74 HISRDCPNNPKGIYPQGGGCRYCGDVNHFAKDCPN 108
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRC 284
CF C++ GH K+CP K K +C CG H + C + L C++C
Sbjct: 16 CFYCRQPGHCLKNCPKKAKG---EDSICYNCGSHDHILRDCPEPRT-GKLAFSTCFVCHQ 71
Query: 285 FGHL---CCVNISDAVPGEVSCFRCGQLGH 311
GH+ C N P C CG + H
Sbjct: 72 MGHISRDCPNNPKGIYPQGGGCRYCGDVNH 101
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 183 CYNCGEEGHMAVNC---RSAVKRKKPCFVCGSLEHGVRQCS--------KAQDCFICKKG 231
CYNCG H+ +C R+ CFVC + H R C + C C
Sbjct: 40 CYNCGSHDHILRDCPEPRTGKLAFSTCFVCHQMGHISRDCPNNPKGIYPQGGGCRYCGDV 99
Query: 232 GHRAKDCPDKHK 243
H AKDCP+K K
Sbjct: 100 NHFAKDCPNKRK 111
>gi|22596554|gb|AAN03310.1|AF457088_1 gag protein [Human immunodeficiency virus 1]
Length = 489
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ +V R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 361 EAMSQVQKTNIMVQRGNFRGQRRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 410
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 411 GKEGHQMKDCTERQANFLGK 430
>gi|429249298|gb|AFZ77693.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGREGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G H A A+ + + + ++ G+ + K CF C + GH A++C
Sbjct: 350 CQGVGGPSHKARVLAEAMSQAQHTNIM--MQKGIFKGPKRIKCFNCGREGHLARNCRAPR 407
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 KKG------CWKCGKEGHQMKDC 424
>gi|429249222|gb|AFZ77655.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 375 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 424
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 425 CTERQANFLGK 435
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 350 ACQGVGGPGHKARVLAEAMSQAQHANIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 407
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 RKKG------CWKCGKEGHQMKDC 425
>gi|410903994|ref|XP_003965478.1| PREDICTED: zinc finger CCHC domain-containing protein 9-like
[Takifugu rubripes]
Length = 274
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 14/97 (14%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFIC 228
C+NC + GH NC A + ++ C+ CGS EH +++C D CFIC
Sbjct: 135 CFNCRKPGHGLANCPEADRDEEMGRGICYRCGSTEHEIQKCKAKVDPALGEFPYAKCFIC 194
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ GH ++ CPD K + C CG H C
Sbjct: 195 GETGHLSRTCPDNPKGLYAQGGCCRVCGSVEHFQKDC 231
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLDDLKEVQCYIC 282
CF C+K GH +CP+ + +C +CG + H++ C+ +L + +C+IC
Sbjct: 135 CFNCRKPGHGLANCPEADRDEEMGRGICYRCGSTEHEIQKCKAKVDPALGEFPYAKCFIC 194
Query: 283 RCFGHL--CCVNISDAVPGEVSCFR-CGQLGH 311
GHL C + + + C R CG + H
Sbjct: 195 GETGHLSRTCPDNPKGLYAQGGCCRVCGSVEH 226
>gi|373842354|gb|AEY77166.1| gag protein [Human immunodeficiency virus]
Length = 495
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + + +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQNTNIMMQKGIFKGPKRIK--------CFNCGKEGHIAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G+ + K CF C K GH AK+C K G C KCG GH M C
Sbjct: 377 MQKGIFKGPKRIKCFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|373842384|gb|AEY77181.1| gag protein [Human immunodeficiency virus]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQAQQANIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|307182143|gb|EFN69486.1| Zinc finger CCHC domain-containing protein 9 [Camponotus
floridanus]
Length = 422
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKK---PCFVCGSLEHGVRQCS-------KAQDCFICKK 230
Q C+NC + GH +C + + CF CGS EH +C + CFIC++
Sbjct: 282 QVCFNCRKSGHNLSDCPELGRDEACTGICFKCGSTEHTHFECKVNKNSTYRYAKCFICRE 341
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
GH A +CPD K + + C CG H
Sbjct: 342 QGHIAVECPDNPKGIYPHGGCCKICGAVTH 371
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNA--QVCLKCGDSGHDMFSCR-NSYSLDDLKEV 277
K Q CF C+K GH DCP+ G A +C KCG + H F C+ N S +
Sbjct: 280 KKQVCFNCRKSGHNLSDCPE---LGRDEACTGICFKCGSTEHTHFECKVNKNST--YRYA 334
Query: 278 QCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+C+ICR GH+ C N P C CG + H
Sbjct: 335 KCFICREQGHIAVECPDNPKGIYPHGGCCKICGAVTH 371
>gi|451170592|gb|AGF32985.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGREGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C + GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQQTNIM--MQKGIFKGPKRIKCFNCGREGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|429249288|gb|AFZ77688.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + + +GP+ C+NCG EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHPNILMQKGIFKGPKRIK--------CFNCGREGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + + P + ++ G+ + K CF C + GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQHPNIL---MQKGIFKGPKRIKCFNCGREGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKDC 424
>gi|371559504|gb|AEX36683.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|282598041|gb|ADA83285.1| gag protein [Human immunodeficiency virus 1]
Length = 490
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQHTNIMMQRSNFRGQRKIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ CS+ Q F+ K
Sbjct: 413 GKEGHQMKDCSERQANFLGK 432
>gi|429249256|gb|AFZ77672.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGFFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G H A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 350 CQGVGGPSHKARVLAEAMSQAQHTNIM--MQKGFFKGPKRIKCFNCGKEGHLARNCRAPR 407
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 KKG------CWKCGKEGHQMKDC 424
>gi|347441721|emb|CCD34642.1| similar to zinc knuckle domain-containing protein [Botryotinia
fuckeliana]
Length = 206
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 66/178 (37%), Gaps = 52/178 (29%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA------------- 222
P RG CYNC GH++ +C K K C+ CG+ H + CS
Sbjct: 30 PSRGPPKCYNCDNPGHLSRDCPEGPKEKV-CYRCGTSGHISKDCSNPPTEGAGRGGGYGG 88
Query: 223 ---QDCFICKKGGHRAKDCPD--------------------KHKSGFQNAQVCLKCGDSG 259
Q C+ C K GH A++CP+ Q +Q C CG G
Sbjct: 89 GGGQQCYKCSKIGHIARNCPEAGGYGGNQGYGGNQGGYGGGFGGGARQGSQTCFSCGGYG 148
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGHTGL 314
H S D + +CY C GHL C S+A C+ C Q GH L
Sbjct: 149 H--------LSRDCTQGQKCYNCGEVGHLSRDCSQETSEA----RRCYECKQEGHEKL 194
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 28/109 (25%)
Query: 181 QTCYNCGEEGHMAVNCRSAV------------------------KRKKPCFVCGSLEHGV 216
Q CY C + GH+A NC A + + CF CG H
Sbjct: 92 QQCYKCSKIGHIARNCPEAGGYGGNQGYGGNQGGYGGGFGGGARQGSQTCFSCGGYGHLS 151
Query: 217 RQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
R C++ Q C+ C + GH ++DC + A+ C +C GH+ C
Sbjct: 152 RDCTQGQKCYNCGEVGHLSRDCSQE----TSEARRCYECKQEGHEKLDC 196
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 47/121 (38%), Gaps = 37/121 (30%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRA 235
P+RG C+ CG EGH A C S R P C+ C GH +
Sbjct: 12 PNRG---CFTCGTEGHQARECPS---RGPP------------------KCYNCDNPGHLS 47
Query: 236 KDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYS--------LDDLKEVQCYICRCFGH 287
+DCP+ K +VC +CG SGH C N + QCY C GH
Sbjct: 48 RDCPEGPKE-----KVCYRCGTSGHISKDCSNPPTEGAGRGGGYGGGGGQQCYKCSKIGH 102
Query: 288 L 288
+
Sbjct: 103 I 103
>gi|259127950|gb|ACV94746.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHPNIMMQRGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + + P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQHPNIM---MQRGNFRGPKRIKCFNCGKEGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKDC 424
>gi|78172851|gb|ABB29382.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K RGPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 367 NIMMQKSNFRGPRRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 416
Query: 219 CSKAQDCFICK 229
C++ Q F+ +
Sbjct: 417 CTERQANFLGR 427
>gi|392568213|gb|EIW61387.1| hypothetical protein TRAVEDRAFT_63183 [Trametes versicolor
FP-101664 SS1]
Length = 687
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 16/142 (11%)
Query: 183 CYNCGEEG-HMAVNCRSAVKRKKPCFVCGSL-EHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C NCG EG H C + C CG+ EH R C ++ CF C GH + CP+
Sbjct: 331 CKNCGAEGEHKTFECPVLI-----CLTCGARDEHSTRSCPISKTCFTCGMKGHINRTCPN 385
Query: 241 KHKS---GFQNAQVCLKCGDSGHDMFSCRNSYSLDDL--KEVQCYICRCFGHLCCVNISD 295
+ + + + Q C +CG H C + + + E + I R + + +
Sbjct: 386 RAATRAGAYSHYQDCDRCGARTHQTNECPTLWRIYEYVADEERHEILRERDAKRTLALGE 445
Query: 296 AVPGEVS----CFRCGQLGHTG 313
G ++ C+ CG GH G
Sbjct: 446 GGEGYIATDEWCYNCGGSGHLG 467
>gi|355679967|gb|AER96442.1| CCHC-type zinc finger, nucleic acid binding protein [Mustela
putorius furo]
Length = 162
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 62/146 (42%), Gaps = 43/146 (29%)
Query: 177 DRGWQ--------TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFIC 228
DRG+Q CY CGE GH+A +C L+ V + C+ C
Sbjct: 40 DRGFQFVSSSLPDICYRCGESGHLAKDC--------------DLQEDV------EACYNC 79
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
+GGH AKDC + + + Q C CG GH C D E +CY C FGH+
Sbjct: 80 GRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCGEFGHI 130
Query: 289 CCVNISDAVPGEVSCFRCGQLGHTGL 314
D +V C+ CG+ GH +
Sbjct: 131 ----QKDCT--KVKCYGCGETGHVAI 150
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 18/103 (17%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKD 237
+ CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KD
Sbjct: 74 EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKD 133
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCY 280
C C CG++GH +C + EV CY
Sbjct: 134 C---------TKVKCYGCGETGHVAINCSKT------SEVNCY 161
>gi|213137875|gb|ACJ44614.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 10/73 (13%)
Query: 158 SDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI++ R RGPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SANIMMQRNNFRGPRRIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHHM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
>gi|87131043|gb|ABD24125.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V + NI+++K RG R C+NCG+EGH+A NCR+ RKK C+
Sbjct: 363 EAMSQVHQTTNIMMQKGNFRGQRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWK 412
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 413 CGKEGHQMKDCTERQANFLGK 433
>gi|118426904|gb|ABK91203.1| gag protein [Human immunodeficiency virus 1]
Length = 168
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|118426836|gb|ABK91169.1| gag protein [Human immunodeficiency virus 1]
Length = 151
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSTFRGPKRIK--------CFNCGREGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 69 GKEGHQMKDCTERQANFL 86
>gi|374429753|gb|AEZ51093.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 489
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSHVQQTNVLMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
>gi|118426828|gb|ABK91165.1| gag protein [Human immunodeficiency virus 1]
Length = 150
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 10/82 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICKKG 231
G H ++ C++ Q F+ K G
Sbjct: 69 GKEGHQMKDCTERQANFLGKFG 90
>gi|68522114|gb|AAY98703.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 10/71 (14%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H V+
Sbjct: 372 NIMMQKSNFKGPRRII-------KCFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQVKD 422
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 423 CTERQANFLGK 433
>gi|118426846|gb|ABK91174.1| gag protein [Human immunodeficiency virus 1]
Length = 168
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|118426874|gb|ABK91188.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|33088446|gb|AAP93265.1| gag protein [Human immunodeficiency virus 1]
Length = 157
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 24 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 73
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 74 GKEGHQMKDCTERQANFLGK 93
>gi|429249310|gb|AFZ77699.1| gag protein [Human immunodeficiency virus 1]
Length = 506
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 378 NIMMQKGFFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 427
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 428 CTERQANFLGK 438
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G H A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 354 CQGVGGPSHKARVLAEAMSQAQHTNIM--MQKGFFKGPKRIKCFNCGKEGHLARNCRAPR 411
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 412 KKG------CWKCGKEGHQMKDC 428
>gi|388524595|gb|AFK50202.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 140
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Query: 158 SDNIVL--RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG 215
S+N ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ CG H
Sbjct: 16 SNNAIMMQRSNFRGPKRIV-------KCFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQ 66
Query: 216 VRQCSKAQDCFICK 229
+++CSK Q F+ K
Sbjct: 67 MKECSKRQANFLGK 80
>gi|373842350|gb|AEY77164.1| gag protein [Human immunodeficiency virus]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + + +GP+ C+NCG+EGH+A NCR+ RK+ C+ C
Sbjct: 365 EAMSQVQHTNILMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKRGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQHTNIL--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKRG------CWKCGKEGHQMKDC 424
>gi|164415890|gb|AAU14975.2| gag protein [Human immunodeficiency virus 1]
Length = 490
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG EH ++ C++ Q F+ K
Sbjct: 389 CFNCGKEGHLARNCRAP--RKKGCWKCGREEHQMKDCTERQANFLGK 433
>gi|118426942|gb|ABK91222.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|409684286|gb|AFV34206.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGREGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C + GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQQTNIM--MQKGIFKGPKRIKCFNCGREGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|409684276|gb|AFV34197.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGREGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C + GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQQTNIM--MQKGIFKGPKRIKCFNCGREGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|118426964|gb|ABK91233.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNTNIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|118426862|gb|ABK91182.1| gag protein [Human immunodeficiency virus 1]
Length = 168
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|169604969|ref|XP_001795905.1| hypothetical protein SNOG_05500 [Phaeosphaeria nodorum SN15]
gi|111065444|gb|EAT86564.1| hypothetical protein SNOG_05500 [Phaeosphaeria nodorum SN15]
Length = 458
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 73/168 (43%), Gaps = 39/168 (23%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRK---KP---CFVCGSLEHGVRQCSKAQ----DCF 226
D G C NCGE GH+ +C+ V + +P C C H R C K + C
Sbjct: 255 DIGVPLCGNCGELGHIRKHCKQEVPEEVSVQPGVECVYCKEPGHRARDCPKERINPFACK 314
Query: 227 ICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFS----------CRNSYSLDDL-- 274
CK+ GH +K+CP+ + +N + C KC ++GH FS CRN S D +
Sbjct: 315 NCKQEGHNSKECPEPRSA--ENVE-CRKCNETGH--FSKDCPNVAKRTCRNCDSEDHVAK 369
Query: 275 --------KEVQCYICRCFGHLC--CVNISDAVPGEVSCFRCGQLGHT 312
++ QC C FGH C D ++ C C Q GHT
Sbjct: 370 ECPEPRNPEKQQCRNCEKFGHFSKDCPEPKDW--SKIQCNNCQQFGHT 415
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA-----QDCFICKKGGHRAKD 237
C C E GH + +C + KR C C S +H ++C + Q C C+K GH +KD
Sbjct: 337 CRKCNETGHFSKDCPNVAKRT--CRNCDSEDHVAKECPEPRNPEKQQCRNCEKFGHFSKD 394
Query: 238 CPD-KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDD 273
CP+ K S Q C C GH + C+ + D
Sbjct: 395 CPEPKDWSKIQ----CNNCQQFGHTIKRCKEPIAEGD 427
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 223 QDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYIC 282
+ C IC + GH A++CPDK + G + C CG GH+ C N + C C
Sbjct: 38 ETCRICNQTGHFARECPDKPEGGGLTGE-CFNCGQVGHNKADCTNERVERPFNGI-CNSC 95
Query: 283 RCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
GH + + C C Q GH L
Sbjct: 96 GVEGH----SARTCPTNPMKCKLCDQEGHKAL 123
>gi|330417907|ref|NP_001193408.1| zinc finger protein 9 [Bos taurus]
gi|296470847|tpg|DAA12962.1| TPA: zinc finger protein 9-like [Bos taurus]
Length = 171
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 20/110 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKR-KKPCFVCGSLEHGVRQCSKAQD--CFICKKGGHRAKDCP 239
CYNCG+ GH+A +C + ++ C+ CG H R C + ++ C+ C K GH K C
Sbjct: 68 CYNCGKSGHIAKDCAEPKREGERCCYTCGRPGHLARDCDRQEERKCYSCGKSGHIQKYC- 126
Query: 240 DKHKSGFQNAQV-CLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
QV C +CG+ GH +CR + EV CY C GHL
Sbjct: 127 ---------TQVKCYRCGEIGHVAINCRK------MNEVNCYRCGESGHL 161
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 63/161 (39%), Gaps = 38/161 (23%)
Query: 183 CYNCGEEGHMAVNCR-------------------SAVKRKKPCFVCGSLEHGVRQCSKAQ 223
C+ CG GH A C S+ C+ CG H + C
Sbjct: 6 CFKCGRVGHWAPACSKGGGARGRGARGRGHGAQCSSTTLPVICYRCGKFGHYAKDCDLLD 65
Query: 224 D-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC-----RNSYSLDD---- 273
D C+ C K GH AKDC + + G + C CG GH C R YS
Sbjct: 66 DICYNCGKSGHIAKDCAEPKREG---ERCCYTCGRPGHLARDCDRQEERKCYSCGKSGHI 122
Query: 274 ---LKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
+V+CY C GH V I+ EV+C+RCG+ GH
Sbjct: 123 QKYCTQVKCYRCGEIGH---VAINCRKMNEVNCYRCGESGH 160
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P G + CY CG GH+A +C +RK C+ CG H + C++ + C+ C + GH
Sbjct: 83 EPKREGERCCYTCGRPGHLARDCDRQEERK--CYSCGKSGHIQKYCTQVK-CYRCGEIGH 139
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
A +C N C +CG+SGH
Sbjct: 140 VAINCRK------MNEVNCYRCGESGH 160
>gi|118426850|gb|ABK91176.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|118426806|gb|ABK91154.1| gag protein [Human immunodeficiency virus 1]
Length = 150
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 17 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 66
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 67 GKEGHQMKDCTERQANFLGK 86
>gi|25166782|gb|AAN73575.1|AF484493_2 gag polyprotein precursor [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVHQTNIMMQKGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ CS+ Q F+ K
Sbjct: 415 GKEGHQLKDCSERQANFLGK 434
>gi|451170574|gb|AGF32969.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGREGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C + GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQQTNIM--MQKGIFKGPKRIKCFNCGREGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|429249264|gb|AFZ77676.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CNERQANFLGK 434
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQHTNIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|374350295|gb|AEZ35822.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 494
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 361 EAMSQVQQANVMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 410
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 411 GKEGHQMKDCTERQANFLGK 430
Score = 37.4 bits (85), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + V ++ G + K CF C K GH A++C
Sbjct: 345 ACQGVGGPSHKARVLAEAMSQVQQANVM--MQRGNFKGPKRIKCFNCGKEGHLARNCRAP 402
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 403 RKKG------CWKCGKEGHQMKDC 420
>gi|118426840|gb|ABK91171.1| gag protein [Human immunodeficiency virus 1]
Length = 169
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|374429765|gb|AEZ51102.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 491
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ S+ ++ R +GPR C+NCG++GH+A NCR+ RKK C+ C
Sbjct: 361 EAMSHVQQSNVMMQRGNFKGPRKIK--------CFNCGKDGHLAKNCRAP--RKKGCWKC 410
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 411 GKEGHQMKDCNERQANFLGK 430
>gi|255986766|gb|ACU50765.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 10/81 (12%)
Query: 150 EGVTTVEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V S I+++K RGPR C+NCG+EGH+A NCR+ RK+ C+
Sbjct: 365 EAMSQVTNSATIMMQKGNFRGPRKII-------KCFNCGKEGHLAKNCRAP--RKRGCWK 415
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 416 CGKEGHQMKDCTERQANFLGK 436
>gi|32766032|gb|AAP69081.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 10/71 (14%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +++
Sbjct: 370 NIMMQKSNFKGPRRII-------KCFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKE 420
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 421 CTERQANFLGK 431
>gi|55979907|gb|AAV69368.1| gag protein [Human immunodeficiency virus 1]
Length = 143
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|396075649|gb|AFN81333.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQQAGIMMQRGNFKGPRKIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G + + CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQQAGIM--MQRGNFKGPRKIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|85095325|ref|XP_960060.1| hypothetical protein NCU05800 [Neurospora crassa OR74A]
gi|28921519|gb|EAA30824.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 225
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 59/157 (37%), Gaps = 33/157 (21%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRA 235
+ CY CGE GH A C S + C+ C H +C ++A+ C+ C+ GH
Sbjct: 7 RACYKCGELGHHAEACSSPHRL---CYNCKQPNHESSECPLPRSTEAKQCYHCQGLGHVQ 63
Query: 236 KDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYS---------------------LDDL 274
DCP SG + C CG GH M +C N +
Sbjct: 64 ADCPTLRISGAGSTSRCYNCGQPGHYMRACPNPPTGIPRGAPVGRGGFGGFGRGGFAGGA 123
Query: 275 KEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
+ CY C H D + C+ CG+LGH
Sbjct: 124 RPATCYKCGGPNHF----ARDCQAQAMKCYACGKLGH 156
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 27/112 (24%)
Query: 183 CYNCGEEGHMAVNCR---SAVKRKKP----------------------CFVCGSLEHGVR 217
CYNCG+ GH C + + R P C+ CG H R
Sbjct: 80 CYNCGQPGHYMRACPNPPTGIPRGAPVGRGGFGGFGRGGFAGGARPATCYKCGGPNHFAR 139
Query: 218 QC-SKAQDCFICKKGGHRAKDCPDKHKSGFQNA-QVCLKCGDSGHDMFSCRN 267
C ++A C+ C K GH ++DC + A + C +C ++GH C N
Sbjct: 140 DCQAQAMKCYACGKLGHISRDCTAPNGGPLNTAGKTCYQCSETGHISRDCPN 191
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 12/69 (17%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK---------AQDCFICKKGG 232
TCY CG H A +C++ + C+ CG L H R C+ + C+ C + G
Sbjct: 127 TCYKCGGPNHFARDCQAQAMK---CYACGKLGHISRDCTAPNGGPLNTAGKTCYQCSETG 183
Query: 233 HRAKDCPDK 241
H ++DCP+K
Sbjct: 184 HISRDCPNK 192
>gi|55979920|gb|AAV69374.1| gag protein [Human immunodeficiency virus 1]
Length = 144
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|201067640|gb|ACH92926.1| vasa protein [Parhyale hawaiensis]
Length = 707
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 16/102 (15%)
Query: 183 CYNCGEEGHMAVNCRS--AVKRKKPCFVCGSLEHGVRQCSK------------AQDCFIC 228
C CGEEGH A C S + CF CG H R+C + + CF C
Sbjct: 56 CRKCGEEGHRAFECTSGGGGGGNRACFKCGEEGHMSRECPQGGGQSFGGGGGGNRGCFKC 115
Query: 229 KKGGHRAKDCPDK--HKSGFQNAQVCLKCGDSGHDMFSCRNS 268
+ GH ++DCP+ G + C KCG+ GH C +S
Sbjct: 116 GEEGHMSRDCPNSVNGGGGASGGKGCFKCGEEGHMSRDCPSS 157
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 183 CYNCGEEGHMAVNCRSAVK------RKKPCFVCGSLEHGVRQCSKAQD-----CFICKKG 231
C+ CGEEGHM+ +C ++V K CF CG H R C + + CF C +
Sbjct: 112 CFKCGEEGHMSRDCPNSVNGGGGASGGKGCFKCGEEGHMSRDCPSSGNGGGKGCFKCGED 171
Query: 232 GHRAKDCPDKHKSGFQNA--QVCLKCGDSGHDMFSCRN 267
GH A+DCP G + C CG+ GH+ C N
Sbjct: 172 GHMARDCPQGGDGGGGGGGNRGCFNCGEQGHNKADCPN 209
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 18/77 (23%)
Query: 181 QTCYNCGEEGHMAVNC--------RSAVKRKKPCFVCGSLEHGVRQCSKAQD-------- 224
+ C+ CGEEGHM+ C + CF CG H R C + +
Sbjct: 79 RACFKCGEEGHMSRECPQGGGQSFGGGGGGNRGCFKCGEEGHMSRDCPNSVNGGGGASGG 138
Query: 225 --CFICKKGGHRAKDCP 239
CF C + GH ++DCP
Sbjct: 139 KGCFKCGEEGHMSRDCP 155
>gi|156065913|ref|XP_001598878.1| hypothetical protein SS1G_00967 [Sclerotinia sclerotiorum 1980]
gi|154691826|gb|EDN91564.1| hypothetical protein SS1G_00967 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 394
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 60/160 (37%), Gaps = 35/160 (21%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG--VRQCSKAQDCFICKKGGHRAKDC 238
+ CY CG GH A C SA ++ C+ G +G + + ++A+ C+ C+ GH DC
Sbjct: 179 RACYKCGNVGHYAEVCASA---ERLCYNLGHESNGCPLPRTTEAKQCYHCQGLGHVQADC 235
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYS--------------------------LD 272
P SG C CG GH +C N +
Sbjct: 236 PTLRISGAGTTGRCYNCGMPGHLARACPNPNNGMPGAPRGLGAPRGGFGGGFAPRGGFAG 295
Query: 273 DLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHT 312
+ CY C H D V C+ CG++GHT
Sbjct: 296 GPRPATCYKCGGPNHF----ARDCQASAVKCYACGKIGHT 331
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 34/69 (49%), Gaps = 13/69 (18%)
Query: 182 TCYNCGEEGHMAVNCR-SAVKRKKPCFVCGSLEHGVRQCSKAQD--------CFICKKGG 232
TCY CG H A +C+ SAVK C+ CG + H R CS C+ C G
Sbjct: 301 TCYKCGGPNHFARDCQASAVK----CYACGKIGHTSRDCSSPNGGVNKAGKICYTCGTEG 356
Query: 233 HRAKDCPDK 241
H A+DCP K
Sbjct: 357 HVARDCPSK 365
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 31/114 (27%)
Query: 183 CYNCGEEGHMAVNCR------------------------------SAVKRKKPCFVCGSL 212
CYNCG GH+A C + R C+ CG
Sbjct: 249 CYNCGMPGHLARACPNPNNGMPGAPRGLGAPRGGFGGGFAPRGGFAGGPRPATCYKCGGP 308
Query: 213 EHGVRQC-SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
H R C + A C+ C K GH ++DC + + ++C CG GH C
Sbjct: 309 NHFARDCQASAVKCYACGKIGHTSRDCSSPNGGVNKAGKICYTCGTEGHVARDC 362
>gi|118426842|gb|ABK91172.1| gag protein [Human immunodeficiency virus 1]
Length = 163
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 14 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 63
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 64 GKEGHQMKDCTERQANFLGK 83
>gi|118426852|gb|ABK91177.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNTNIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|118426818|gb|ABK91160.1| gag protein [Human immunodeficiency virus 1]
Length = 158
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCNERQANFLGK 88
>gi|32766028|gb|AAP69079.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 10/71 (14%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +++
Sbjct: 370 NIMMQKSNFKGPRRII-------KCFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKE 420
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 421 CTERQANFLGK 431
>gi|32766026|gb|AAP69078.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 10/71 (14%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +++
Sbjct: 370 NIMMQKSNFKGPRRII-------KCFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKE 420
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 421 CTERQANFLGK 431
>gi|55979918|gb|AAV69373.1| gag protein [Human immunodeficiency virus 1]
gi|118426800|gb|ABK91151.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|374350455|gb|AEZ35929.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 493
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQVQHTNIMMQKGNFKGPRRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 411
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 412 GKEGHQMKDCTERQANFLGK 431
>gi|320032219|gb|EFW14174.1| zinc knuckle transcription factor [Coccidioides posadasii str.
Silveira]
Length = 453
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKD 237
C+NCG+ GH + C K CF CG H +C + C IC+ GH A +
Sbjct: 51 ACHNCGQPGHFSRECPEPRKASGACFNCGEEGHNKAECPNPRVFKGTCRICQAEGHPAFE 110
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
CPDK VC C GH C + D
Sbjct: 111 CPDK------GPDVCKNCKGEGHKTKDCTENRKFD 139
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCR---SAVKR-KKPCFVCGSLEHGVRQCSKAQ-DCFICK 229
P DR C NCGE GH C+ + V+R C +C + H R C + + D C+
Sbjct: 256 PMDRQVPKCDNCGEMGHTRRGCKQEPATVERVGVKCVICKEIGHRARDCIQPRIDKSGCR 315
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC 289
GH AK CP+ + + C + + GH C ++D+ V C C GH+
Sbjct: 316 NCGH-AKQCPEPRSAEGVECKKCQQ--EEGHMSKECDKPRNMDN---VTCRNCEKTGHMS 369
Query: 290 CVNISDAVPGEVSCFRCGQLGHT 312
+ +V C C ++GHT
Sbjct: 370 RDCPEEKDWSKVQCTNCKEMGHT 392
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-KAQD-CFICKKGGH 233
P + C+NCGEEGH C + K C +C + H +C K D C CK GH
Sbjct: 68 PRKASGACFNCGEEGHNKAECPNPRVFKGTCRICQAEGHPAFECPDKGPDVCKNCKGEGH 127
Query: 234 RAKDCPDKHK 243
+ KDC + K
Sbjct: 128 KTKDCTENRK 137
>gi|343416463|emb|CCD20360.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 416
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 46/108 (42%), Gaps = 19/108 (17%)
Query: 206 CFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF CG H + C+ CF C GH + +CP K ++C +C + GHDM
Sbjct: 10 CFNCGHFGHSSQLCASKPVCFHCFMPGHTSTECPRK-----DMGRLCYRCKEPGHDM--- 61
Query: 266 RNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTG 313
L+ QC++C GHL P EV C C Q GH
Sbjct: 62 -----AKSLQSPQCHMCNQTGHLVV-----KCP-EVLCNWCHQKGHMA 98
>gi|409181610|gb|AFV26831.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ S ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQVQQSSTMMQRGNFRGQRTIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 411
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 412 GKEGHQMKDCTERQANFLGR 431
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + + ++ G + + CF C K GH A++C
Sbjct: 347 CQGVGGPGHKARVLAEAMSQVQQSSTM--MQRGNFRGQRTIKCFNCGKEGHLARNCRAPR 404
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 405 KKG------CWKCGKEGHQMKDC 421
>gi|121645193|gb|ABM63552.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
>gi|126321496|ref|XP_001363296.1| PREDICTED: zinc finger CCHC domain-containing protein 9-like
[Monodelphis domestica]
Length = 262
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CF 226
+ CY+C ++GH +C + ++ + C+ CGS EH + +C D CF
Sbjct: 119 KVCYHCRKQGHGVADCPAVLESQDMGTGICYRCGSTEHEITKCKAKVDPAMGEFPFAKCF 178
Query: 227 ICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
IC + GH ++ CPD K + C CG H C + + D + V
Sbjct: 179 ICGEMGHLSRSCPDNPKGLYAEGGGCRLCGSVEHFKKDCPENQNSDHMVTV 229
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLDDLKEVQC 279
A+ C+ C+K GH DCP +S +C +CG + H++ C+ ++ + +C
Sbjct: 118 AKVCYHCRKQGHGVADCPAVLESQDMGTGICYRCGSTEHEITKCKAKVDPAMGEFPFAKC 177
Query: 280 YICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+IC GHL C N C CG + H
Sbjct: 178 FICGEMGHLSRSCPDNPKGLYAEGGGCRLCGSVEH 212
>gi|118426804|gb|ABK91153.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|371559534|gb|AEX36710.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K RGP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
>gi|300719877|gb|ADK32890.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 158 SDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVR 217
S N++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 369 SMNMMQRSNFKGPRRII-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMK 419
Query: 218 QCSKAQDCFICK 229
C++ Q F+ K
Sbjct: 420 DCTERQANFLGK 431
>gi|118426820|gb|ABK91161.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|118426910|gb|ABK91206.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|32766020|gb|AAP69075.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 10/71 (14%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +++
Sbjct: 370 NIMMQKSNFKGPRRII-------KCFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKE 420
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 421 CTERQANFLGK 431
>gi|159125542|gb|EDP50659.1| zinc knuckle transcription factor (CnjB), putative [Aspergillus
fumigatus A1163]
Length = 509
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKDC 238
C NCG +GH A C A ++ CF CG +C+K + C IC K GH A +C
Sbjct: 73 CRNCGGDGHFAREC-PAPRKGMACFNCGEEGRSKAECTKPRVFKGPCRICSKEGHPAAEC 131
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
PD+ VC C GH C + D
Sbjct: 132 PDRP------PDVCKNCQSEGHKTIECTENRKFD 159
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 19/143 (13%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNC---RSAVKR-KKPCFVCGSLEHGVRQCSKAQDCFICKK 230
P D+ C NCGE GH A C R+ V R + C C + H R C++ + + +
Sbjct: 279 PYDKQIPKCGNCGEMGHTARGCKEERALVDRVEVKCVNCNASGHRARDCTEPR---VDRS 335
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC- 289
H+A DCP+ + C +C + GH C + + C C H+
Sbjct: 336 PEHKAADCPNPRSA---EGVECKRCNEMGHFAKDCHQAPA-----PRTCRNCGSEDHMAR 387
Query: 290 -CVNISDAVPGEVSCFRCGQLGH 311
C DA V+C C ++GH
Sbjct: 388 DCDKPRDA--SIVTCRNCEEVGH 408
>gi|225056152|gb|ACN80882.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 10/81 (12%)
Query: 150 EGVTTVEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V S ++++K RGP+ C+NCG+EGH+A NCR+ RKK C+
Sbjct: 364 EAMSQVTSSATVMMQKSNFRGPKRTV-------KCFNCGKEGHIAKNCRAP--RKKGCWK 414
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H +++C++ Q F+ K
Sbjct: 415 CGKEGHQMKECTERQANFLGK 435
Score = 37.7 bits (86), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G H A A+ + + R + CF C K GH AK+C
Sbjct: 349 CQGVGGPSHKARVLAEAMSQVTSSATVMMQKSNFRGPKRTVKCFNCGKEGHIAKNCRAPR 408
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 409 KKG------CWKCGKEGHQMKEC 425
>gi|118426940|gb|ABK91221.1| gag protein [Human immunodeficiency virus 1]
Length = 150
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|93210942|gb|ABF00892.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++++ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSSINNTNIMMQRGNFKGPRRII-------KCFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
>gi|55979914|gb|AAV69371.1| gag protein [Human immunodeficiency virus 1]
Length = 150
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 20 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 69
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 70 GKEGHQMKDCTERQANFLGK 89
>gi|334883357|dbj|BAK38642.1| unnamed protein product [Tribolium castaneum]
Length = 710
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAK 236
CY C E GHMA C+ V R K C CG H V+ C K C +C GHRAK
Sbjct: 638 CYRCWEPGHMAARCQ-GVDRSKLCHRCGEEGHSVKTCEKEMFCPVCGVRGHRAK 690
>gi|118426946|gb|ABK91224.1| gag protein [Human immunodeficiency virus 1]
Length = 151
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|118426808|gb|ABK91155.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|18699193|gb|AAL78453.1|AF413987_8 gag polyprotein [Human immunodeficiency virus 1]
Length = 497
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 364 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 413
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 414 GKEGHQMKNCTERQANFLGR 433
>gi|70993356|ref|XP_751525.1| zinc knuckle transcription factor (CnjB) [Aspergillus fumigatus
Af293]
gi|66849159|gb|EAL89487.1| zinc knuckle transcription factor (CnjB), putative [Aspergillus
fumigatus Af293]
Length = 509
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKDC 238
C NCG +GH A C A ++ CF CG +C+K + C IC K GH A +C
Sbjct: 73 CRNCGGDGHFAREC-PAPRKGMACFNCGEEGRSKAECTKPRVFKGPCRICSKEGHPAAEC 131
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
PD+ VC C GH C + D
Sbjct: 132 PDRP------PDVCKNCQSEGHKTIECTENRKFD 159
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 19/143 (13%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNC---RSAVKR-KKPCFVCGSLEHGVRQCSKAQDCFICKK 230
P D+ C NCGE GH A C R+ V R + C C + H R C++ + + +
Sbjct: 279 PYDKQIPKCGNCGEMGHTARGCKEERALVDRVEVKCVNCNASGHRARDCTEPR---VDRS 335
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC- 289
H+A DCP+ + C +C + GH C + + C C H+
Sbjct: 336 PEHKAADCPNPRSA---EGVECKRCNEMGHFAKDCHQAPA-----PRTCRNCGSEDHMAR 387
Query: 290 -CVNISDAVPGEVSCFRCGQLGH 311
C DA V+C C ++GH
Sbjct: 388 DCDKPRDA--SIVTCRNCEEVGH 408
>gi|387019989|gb|AFJ52112.1| Zinc finger CCHC domain-containing protein 7-like [Crotalus
adamanteus]
Length = 584
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 13/133 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
TC NC + GH++ NC + K+ PC +C H C A+ C C GH +++CP+K
Sbjct: 273 TCRNCDKRGHLSKNCPTP-KKIPPCCLCAQRGHLQNSCP-ARFCLNCCLPGHCSRECPEK 330
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEV 301
+ C +C GH +C + Q ++ G L + P
Sbjct: 331 ----MYWKKHCNRCDMRGHYADACPEIWR-------QYHLTTRPGPLKKADSYSVRPASA 379
Query: 302 SCFRCGQLGHTGL 314
C+ CG+ GH G
Sbjct: 380 YCYNCGEKGHYGF 392
>gi|118426866|gb|ABK91184.1| gag protein [Human immunodeficiency virus 1]
gi|118426868|gb|ABK91185.1| gag protein [Human immunodeficiency virus 1]
gi|118426872|gb|ABK91187.1| gag protein [Human immunodeficiency virus 1]
gi|118426878|gb|ABK91190.1| gag protein [Human immunodeficiency virus 1]
gi|118426898|gb|ABK91200.1| gag protein [Human immunodeficiency virus 1]
gi|118426908|gb|ABK91205.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|378734858|gb|EHY61317.1| cellular nucleic acid-binding protein [Exophiala dermatitidis
NIH/UT8656]
Length = 182
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 67/171 (39%), Gaps = 45/171 (26%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-------------- 219
D P +G TCYNCG EGH++ C +A + K C+ CG+ H R C
Sbjct: 17 DCPKKGTPTCYNCGAEGHVSREC-TAAPKPKSCYKCGNEGHLARDCQAAPAGGAGGGWGN 75
Query: 220 --------SKAQDCFICKKGGHRAKDCP-------DKHKSGFQNAQVCLKCGDSGHDMFS 264
A++C+ C GH A+DC S Q C CG GH
Sbjct: 76 VGGNAYGGGSARECYRCGGQGHIARDCTSGGQGGYGGGYSRGGGGQTCYSCGGVGHMSRD 135
Query: 265 CRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVS----CFRCGQLGH 311
C + +CY C GHL S P E S C++C Q GH
Sbjct: 136 CTQG------RAQKCYNCGEQGHL-----SRDCPSEASSERICYKCKQPGH 175
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 17/98 (17%)
Query: 183 CYNCGEEGHMAVNC-----------RSAVKRKKPCFVCGSLEHGVRQCS--KAQDCFICK 229
CY CG +GH+A +C S + C+ CG + H R C+ +AQ C+ C
Sbjct: 89 CYRCGGQGHIARDCTSGGQGGYGGGYSRGGGGQTCYSCGGVGHMSRDCTQGRAQKCYNCG 148
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
+ GH ++DCP + S ++C KC GH +C N
Sbjct: 149 EQGHLSRDCPSEASS----ERICYKCKQPGHLQSACPN 182
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 60/155 (38%), Gaps = 33/155 (21%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKDC 238
CYNCG+ H A +C K+ P C+ CG+ H R+C+ K + C+ C GH A+DC
Sbjct: 5 CYNCGDSSHQARDC---PKKGTPTCYNCGAEGHVSRECTAAPKPKSCYKCGNEGHLARDC 61
Query: 239 PDKHKS--------------GFQNAQVCLKCGDSGHDMFSC-------RNSYSLDDLKEV 277
G +A+ C +CG GH C
Sbjct: 62 QAAPAGGAGGGWGNVGGNAYGGGSARECYRCGGQGHIARDCTSGGQGGYGGGYSRGGGGQ 121
Query: 278 QCYICRCFGHLCCVNISDAVPGEVS-CFRCGQLGH 311
CY C GH+ D G C+ CG+ GH
Sbjct: 122 TCYSCGGVGHM----SRDCTQGRAQKCYNCGEQGH 152
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC----SKAQDCFICKKGGHRAKD 237
TCY+CG GHM+ +C R + C+ CG H R C S + C+ CK+ GH
Sbjct: 122 TCYSCGGVGHMSRDCTQG--RAQKCYNCGEQGHLSRDCPSEASSERICYKCKQPGHLQSA 179
Query: 238 CPD 240
CP+
Sbjct: 180 CPN 182
>gi|270015492|gb|EFA11940.1| hypothetical protein TcasGA2_TC001898 [Tribolium castaneum]
Length = 710
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAK 236
CY C E GHMA C+ V R K C CG H V+ C K C +C GHRAK
Sbjct: 638 CYRCWEPGHMAARCQ-GVDRSKLCHRCGEEGHSVKTCEKEMFCPVCGVRGHRAK 690
>gi|118426816|gb|ABK91159.1| gag protein [Human immunodeficiency virus 1]
Length = 153
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 20 EAMSQVQHANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 69
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 70 GKEGHQMKDCTERQANFLGK 89
>gi|46243164|gb|AAS83690.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K RGP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGQEGHQMKD 420
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 421 CTERQANFLGK 431
>gi|259129245|gb|ACV95278.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ ++ ++ ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHMQQANIMMQRGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSHMQQANIM--MQRGNFRGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|118426916|gb|ABK91209.1| gag protein [Human immunodeficiency virus 1]
Length = 151
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|6815637|gb|AAF28587.1|AF184455_1 gag protein [Human immunodeficiency virus 1]
Length = 183
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 112 EAMSQVQHTNIMMQRGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 161
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H +++C++ Q F+
Sbjct: 162 GKEGHQMKECTERQANFL 179
>gi|393906109|gb|EJD74179.1| hypothetical protein LOAG_18462 [Loa loa]
Length = 145
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 26/129 (20%)
Query: 183 CYNCGEEGHMAVNC----RSAVKRKKP--CFVCGSLEHGVRQCSKAQ------------- 223
CY C E+GH A NC + AV+R CF CG H R+C +
Sbjct: 9 CYKCNEKGHFARNCPTQIQEAVRRGGGGDCFNCGQSGHFARECPNQRGGGRYYGGRGGGR 68
Query: 224 ----DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQC 279
+C+ C GH A++CP + + G +Q C CG GH C + + D K +C
Sbjct: 69 SGQSECYQCGGFGHFARECPTERRVGGGGSQKCYNCGRFGHISRDCPD-FGSDQSK--RC 125
Query: 280 YICRCFGHL 288
Y C+ GH+
Sbjct: 126 YNCQQIGHI 134
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 24/103 (23%)
Query: 179 GWQTCYNCGEEGHMAVNC-------------RSAVKRKKPCFVCGSLEHGVRQCSK---- 221
G C+NCG+ GH A C + C+ CG H R+C
Sbjct: 34 GGGDCFNCGQSGHFARECPNQRGGGRYYGGRGGGRSGQSECYQCGGFGHFARECPTERRV 93
Query: 222 ----AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
+Q C+ C + GH ++DCPD G ++ C C GH
Sbjct: 94 GGGGSQKCYNCGRFGHISRDCPD---FGSDQSKRCYNCQQIGH 133
>gi|371559494|gb|AEX36674.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNTSIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|328834216|gb|AEB52650.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V+ ++ ++++K RGP+ C+NCG+EGH+A NCR+ RKK C+
Sbjct: 365 EAMSQVQNANIMMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWK 414
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 415 CGKEGHQMKDCTERQANFLGK 435
>gi|326417020|gb|ADZ73354.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQQANVMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|118426948|gb|ABK91225.1| gag protein [Human immunodeficiency virus 1]
Length = 133
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 2 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 51
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 52 GKEGHQMKDCTERQANFLGK 71
>gi|118426864|gb|ABK91183.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|112351458|gb|ABI15249.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K RGP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 372 NIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 422 CTERQANFLGK 432
>gi|331029868|gb|AEC50062.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGFFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 37.7 bits (86), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQKGFFKGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|331029862|gb|AEC50059.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + + +GP+ C+NCG EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNTKIMMQKGIFKGPKRIK--------CFNCGREGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + + + ++ G+ + K CF C + GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVQNTKIM--MQKGIFKGPKRIKCFNCGREGHLARNCRAPR 407
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 KKG------CWKCGKEGHQMKDC 424
>gi|270015485|gb|EFA11933.1| hypothetical protein TcasGA2_TC001891 [Tribolium castaneum]
Length = 1184
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAK 236
CY C E GHMA C+ V R K C CG H V+ C K C +C GHRAK
Sbjct: 1112 CYRCWEPGHMAARCQ-GVDRSKLCHRCGEEGHSVKTCEKEMFCPVCGVRGHRAK 1164
>gi|254584670|ref|XP_002497903.1| ZYRO0F16148p [Zygosaccharomyces rouxii]
gi|186703710|emb|CAQ43401.1| Zinc finger protein GIS2 [Zygosaccharomyces rouxii]
gi|238940796|emb|CAR28970.1| ZYRO0F16148p [Zygosaccharomyces rouxii]
Length = 161
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 65/160 (40%), Gaps = 39/160 (24%)
Query: 181 QTCYNCGEEGHMAVNC---RSAVKRKKP-----------------CFVCGSLEHGVRQCS 220
+ CY CG+ GH+A C R KP C+ CG H +C+
Sbjct: 4 KACYVCGKIGHLAEECDSERLCYNCNKPGHVQSECTLPRTVEFKQCYNCGETGHVKTECT 63
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQV---------CLKCGDSGHDMFSCRNSYSL 271
Q C+ C + GH +++CP+ KS F +A C +CG H C S S
Sbjct: 64 -VQRCYNCNQTGHISRECPEPKKSRFASAGAPTGGKPKVSCYRCGGPNHMAKDCLQSGS- 121
Query: 272 DDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
+CY C FGHL + PGE C+ C GH
Sbjct: 122 ------KCYSCGKFGHL--SKECPSGPGEKICYNCNGSGH 153
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD---CFICKKGGHRAKDC 238
+CY CG HMA +C + + C+ CG H ++C C+ C GH +KDC
Sbjct: 102 SCYRCGGPNHMAKDCLQSGSK---CYSCGKFGHLSKECPSGPGEKICYNCNGSGHISKDC 158
Query: 239 P 239
P
Sbjct: 159 P 159
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 49/127 (38%), Gaps = 36/127 (28%)
Query: 203 KKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDM 262
+K C+VCG + H +C + C+ C K GH +C F+ C CG++GH
Sbjct: 3 QKACYVCGKIGHLAEECDSERLCYNCNKPGHVQSECTLPRTVEFKQ---CYNCGETGHVK 59
Query: 263 FSCRNSYSLDDLKEVQ-CYICRCFGHLCCVNISDAVP-----------------GEVSCF 304
C VQ CY C GH IS P +VSC+
Sbjct: 60 TEC----------TVQRCYNCNQTGH-----ISRECPEPKKSRFASAGAPTGGKPKVSCY 104
Query: 305 RCGQLGH 311
RCG H
Sbjct: 105 RCGGPNH 111
>gi|55979916|gb|AAV69372.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|409181530|gb|AFV26759.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K RGP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
>gi|429249228|gb|AFZ77658.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 11/69 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGMFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFI 227
C++ Q F+
Sbjct: 424 CTERQANFL 432
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G H A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 350 CQGVGGPSHKARVLAEAMSQAQHTNIM--MQKGMFKGPKRIKCFNCGKEGHLARNCRAPR 407
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 KKG------CWKCGKEGHQMKDC 424
>gi|300720165|gb|ADK33082.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 10/73 (13%)
Query: 158 SDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 STNIMMQKSNFKGPRRIV-------KCFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
>gi|440635159|gb|ELR05078.1| hypothetical protein GMDG_07120 [Geomyces destructans 20631-21]
Length = 212
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 66/192 (34%), Gaps = 68/192 (35%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK------------ 221
D P RG CYNCG EGHM+ C K K C+ CG H R C+
Sbjct: 25 DCPTRGPAKCYNCGGEGHMSRECPEGPKDKT-CYKCGQPGHISRDCANPAAEGMGAGRSF 83
Query: 222 ----AQDCFICKKGGHRAKDCPD----------------------------------KHK 243
Q+C+ C K GH A++CP+
Sbjct: 84 GGGAGQECYKCSKVGHIARNCPEAGAGGYQNAGYGGGGGGYGGGGAGYGGGGAGYGGGAG 143
Query: 244 SGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVS- 302
Q C CG GH S D + +CY C GHL S P E S
Sbjct: 144 GYGGRQQTCYSCGGVGH--------MSRDCTQGQKCYNCGQTGHL-----SRDCPSETSA 190
Query: 303 ---CFRCGQLGH 311
C++C Q GH
Sbjct: 191 ERTCYKCRQPGH 202
Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 202 RKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHD 261
R++ C+ CG + H R C++ Q C+ C + GH ++DCP + + + C KC GH
Sbjct: 148 RQQTCYSCGGVGHMSRDCTQGQKCYNCGQTGHLSRDCPSETSA----ERTCYKCRQPGHV 203
Query: 262 MFSC 265
C
Sbjct: 204 QAQC 207
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 172 YFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC---SKAQDCFIC 228
Y + P + + CYNCG++ H A +C + K C+ CG H R+C K + C+ C
Sbjct: 3 YGEAPQQ-QRGCYNCGDQSHQARDCPTRGPAK--CYNCGGEGHMSRECPEGPKDKTCYKC 59
Query: 229 KKGGHRAKDCPDKHKSGF--------QNAQVCLKCGDSGHDMFSC 265
+ GH ++DC + G Q C KC GH +C
Sbjct: 60 GQPGHISRDCANPAAEGMGAGRSFGGGAGQECYKCSKVGHIARNC 104
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC----SKAQDCFICKKGGHRAK 236
QTCY+CG GHM+ +C K C+ CG H R C S + C+ C++ GH
Sbjct: 150 QTCYSCGGVGHMSRDCTQGQK----CYNCGQTGHLSRDCPSETSAERTCYKCRQPGHVQA 205
Query: 237 DCPD 240
CP+
Sbjct: 206 QCPE 209
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 15/100 (15%)
Query: 199 AVKRKKPCFVCGSLEHGVRQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCG 256
A ++++ C+ CG H R C C+ C GH +++CP+ K + C KCG
Sbjct: 6 APQQQRGCYNCGDQSHQARDCPTRGPAKCYNCGGEGHMSRECPEGPKD-----KTCYKCG 60
Query: 257 DSGHDMFSCRNSY--------SLDDLKEVQCYICRCFGHL 288
GH C N S +CY C GH+
Sbjct: 61 QPGHISRDCANPAAEGMGAGRSFGGGAGQECYKCSKVGHI 100
>gi|334884539|gb|AEH21380.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 498
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQQTNVMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|270015490|gb|EFA11938.1| hypothetical protein TcasGA2_TC001896 [Tribolium castaneum]
Length = 723
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAK 236
CY C E GHMA C+ V R K C CG H V+ C K C +C GHRAK
Sbjct: 651 CYRCWEPGHMAARCQ-GVDRSKLCHRCGEEGHSVKTCEKEMFCPVCGVRGHRAK 703
>gi|118426888|gb|ABK91195.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|63098410|gb|AAY32450.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 158 SDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVR 217
S N++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 369 SMNMMQRSNFKGPRRII-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMK 419
Query: 218 QCSKAQDCFICK 229
C++ Q F+ K
Sbjct: 420 DCTERQANFLGK 431
>gi|429249214|gb|AFZ77651.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGREGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C + GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQHTNIM--MQKGIFKGPKRIKCFNCGREGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|55979925|gb|AAV69376.1| gag protein [Human immunodeficiency virus 1]
Length = 144
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|55979923|gb|AAV69375.1| gag protein [Human immunodeficiency virus 1]
Length = 141
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|270015488|gb|EFA11936.1| hypothetical protein TcasGA2_TC001894 [Tribolium castaneum]
Length = 502
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAK 236
CY C E GHMA C+ V R K C CG H V+ C K C +C GHRAK
Sbjct: 430 CYRCWEPGHMAARCQ-GVDRSKLCHRCGEEGHSVKTCEKEMFCPVCGVRGHRAK 482
>gi|55979890|gb|AAV69360.1| gag protein [Human immunodeficiency virus 1]
Length = 145
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|296826428|ref|XP_002850974.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
gi|238838528|gb|EEQ28190.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
Length = 495
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKD 237
TC NCG+ GH A C K CF CG H C + C IC+K GH A +
Sbjct: 52 TCRNCGQSGHFARECPEPRKPTGACFNCGQEGHNKSDCPNPRVFTGTCRICEKVGHPAAE 111
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CP++ +C C GH C
Sbjct: 112 CPERP------PDICKNCKGEGHKTMEC 133
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCR---SAVKR-KKPCFVCGSLEHGVRQCSKAQ----DCF 226
P DR C NCG+ GH+ +C+ S V+R + C C H R C +A+ C
Sbjct: 260 PLDRQVPKCSNCGKMGHIMKSCKEELSVVERVEVKCVNCKQPGHRARDCKEARVDRFACR 319
Query: 227 ICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
C KGGHR+ +CP+ + C +C + GH C
Sbjct: 320 NCGKGGHRSTECPEPRSA---EGVECKRCNEVGHFAKDC 355
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHRAKD 237
C NC + GH A +C+ A + C CG H +C + + +C C + GH AKD
Sbjct: 295 CVNCKQPGHRARDCKEARVDRFACRNCGKGGHRSTECPEPRSAEGVECKRCNEVGHFAKD 354
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
CP S + C CG H C ++ ++
Sbjct: 355 CPQGGGS-----RACRNCGSEDHIAKDCDQPRNMANV 386
>gi|225710718|gb|ACO11205.1| Zinc finger CCHC domain-containing protein 9 [Caligus
rogercresseyi]
Length = 402
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 40/102 (39%), Gaps = 17/102 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP--------CFVCGSLEHGVRQCS---------KAQD 224
CY C + GH +C A K CF CGS EH + C +
Sbjct: 255 VCYLCRKPGHFLSDCPEAEGSKSAKTVGTMGSCFKCGSAEHSSKDCQSKLKGEAAYRFAV 314
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
CFIC + GH AK CPD K + C CG H C+
Sbjct: 315 CFICNQTGHLAKACPDNPKGLYPKGGGCRFCGSVEHLKSECK 356
>gi|242029054|gb|ACS76557.1| gag protein [Human immunodeficiency virus 1]
Length = 361
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 253 EAMSQVNSTNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 303
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 304 GREGHQMKDCTERQANFLGK 323
>gi|242028231|gb|ACS76151.1| gag protein [Human immunodeficiency virus 1]
Length = 458
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 350 EAMSQVNNTNIMIQRSNFKGPRRI-------VKCFNCGKEGHIARNCRAP--RKKGCWKC 400
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 401 GKEGHQMKDCTERQANFLGK 420
>gi|255739379|gb|ACU31627.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 15/81 (18%)
Query: 158 SDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SKNIMMQRSNFKGPRKII-------KCFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK-----KGG 232
+ C++ Q F+ K KGG
Sbjct: 420 KDCTERQANFLGKIWPSHKGG 440
>gi|223947177|gb|ACN27672.1| unknown [Zea mays]
gi|413932600|gb|AFW67151.1| hypothetical protein ZEAMMB73_637389 [Zea mays]
Length = 256
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 162 VLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK 221
++ K R P +F TC NC GH A C S K C+ C H +C
Sbjct: 57 LVCKNCRRPGHFAKECPSAPTCNNCNLPGHFAAECTS----KTVCWNCKEPGHIASECKN 112
Query: 222 AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKE 276
C C K GH A+DCP SG N ++C KC SGH C N + ++ ++
Sbjct: 113 EALCHTCNKTGHLARDCPT---SG-ANVKLCNKCFKSGHIAVDCTNERACNNCRQ 163
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 20/136 (14%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C+ C + GH+A +C ++ K C C H C+ + C C++ GH A++C
Sbjct: 116 CHTCNKTGHLARDCPTSGANVKLCNKCFKSGHIAVDCTNERACNNCRQPGHIAREC---- 171
Query: 243 KSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL-------KEVQCYICRCFGHLCCVNISD 295
+N VC C SGH C + ++ +++ C IC GH IS
Sbjct: 172 ----KNDPVCNLCNVSGHVARVCPKTTLASEIHIQGGPFRDILCRICGQPGH-----ISR 222
Query: 296 AVPGEVSCFRCGQLGH 311
V C CG GH
Sbjct: 223 NCMATVICDTCGGRGH 238
>gi|118426848|gb|ABK91175.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|270015347|gb|EFA11795.1| hypothetical protein TcasGA2_TC008574 [Tribolium castaneum]
Length = 851
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAK 236
CY C E GHMA C+ V R K C CG H V+ C K C +C GHRAK
Sbjct: 779 CYRCWEPGHMAARCQ-GVDRSKLCHRCGEEGHSVKTCEKEMFCPVCGVRGHRAK 831
>gi|259125328|gb|ACV93726.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG EH ++ C++ Q F+ K
Sbjct: 392 CFNCGKEGHIARNCRAP--RKKGCWKCGREEHQMKDCTERQANFLGK 436
>gi|255739457|gb|ACU31666.1| gag protein [Human immunodeficiency virus 1]
gi|255739459|gb|ACU31667.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 10/73 (13%)
Query: 158 SDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 370 SSNIMMQKSNFKGPRRI-------VKCFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQM 420
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 421 KDCTERQANFLGK 433
>gi|118426956|gb|ABK91229.1| gag protein [Human immunodeficiency virus 1]
Length = 149
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|209576161|gb|ACI64050.1| gag protein [Human immunodeficiency virus 1]
Length = 107
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 4 EAMSQVQSANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 53
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 54 GKEGHQMKDCTERQANFLGK 73
>gi|300720012|gb|ADK32980.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQVNSTNIMMQRSNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
>gi|242029064|gb|ACS76562.1| gag protein [Human immunodeficiency virus 1]
Length = 361
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 253 EAMSQVNSTNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 303
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 304 GREGHQMKDCTERQANFLGK 323
>gi|242029062|gb|ACS76561.1| gag protein [Human immunodeficiency virus 1]
Length = 361
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 253 EAMSQVNSTNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 303
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 304 GREGHQMKDCTERQANFLGK 323
>gi|242029042|gb|ACS76551.1| gag protein [Human immunodeficiency virus 1]
Length = 361
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 253 EAMSQVNSTNVMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 303
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 304 GREGHQMKDCTERQANFLGK 323
>gi|242028355|gb|ACS76213.1| gag protein [Human immunodeficiency virus 1]
Length = 465
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG EH ++ C++ Q F+ K
Sbjct: 371 CFNCGKEGHIARNCRAP--RKKGCWKCGKEEHQMKDCTERQANFLGK 415
>gi|255739381|gb|ACU31628.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 15/81 (18%)
Query: 158 SDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SKNIMMQRSNFKGPRKII-------KCFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK-----KGG 232
+ C++ Q F+ K KGG
Sbjct: 420 KDCTERQANFLGKIWPSHKGG 440
>gi|118426798|gb|ABK91150.1| gag protein [Human immunodeficiency virus 1]
Length = 168
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|56193075|gb|AAV84145.1| gag protein [Human immunodeficiency virus 1]
Length = 504
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V S+ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVNNSNVMMQRSNFKGPRRNI-------KCFNCGKEGHLARNCRAP--RKKGCWKC 413
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 414 GKEGHQMKDCTERQANFLGK 433
>gi|41353552|gb|AAS01339.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNANIMMQKSSFRGPKRIK--------CFNCGREGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 415 GKEGHQMKDCTERQANFL 432
>gi|254667110|gb|ACT76496.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ + ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQTQQANIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
GS H ++ C++ Q F+ +
Sbjct: 415 GSEGHQMKDCTERQANFLGR 434
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G H A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 350 CQGVGGPSHKARVLAEAMSQTQQANIM--MQRGNFKGPKRIKCFNCGKEGHLARNCRAPR 407
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 KKG------CWKCGSEGHQMKDC 424
>gi|259126488|gb|ACV94218.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHANIMMQKGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GREGHQMKDCTERQANFLGK 434
>gi|407739094|gb|AFU31929.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQQANIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|403256918|ref|XP_003921090.1| PREDICTED: zinc finger CCHC domain-containing protein 9-like
[Saimiri boliviensis boliviensis]
Length = 196
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C +A++ + C+ CGS EH + +C D CF+
Sbjct: 54 VCFHCRKPGHGIADCPAALENQDTGTGICYRCGSTEHEITKCKATVDPALGEFPFAKCFV 113
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
C + GH ++ CPD K + + C CG H C S + D + V
Sbjct: 114 CGEMGHPSRACPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSDRMVTV 163
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C+K GH DCP ++ +C +CG + H++ C+ + +L
Sbjct: 45 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDTGTGICYRCGSTEHEITKCKATVDPALG 104
Query: 273 DLKEVQCYICRCFGH 287
+ +C++C GH
Sbjct: 105 EFPFAKCFVCGEMGH 119
>gi|242029058|gb|ACS76559.1| gag protein [Human immunodeficiency virus 1]
Length = 361
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 253 EAMSQVNSTNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 303
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 304 GREGHQMKDCTERQANFLGK 323
>gi|271278073|emb|CBI69646.1| gag polyprotein [HIV-1 M:B 2001_KC134]
Length = 497
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ QD F+ K
Sbjct: 392 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKDCTERQDNFLGK 436
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 183 CYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + P + ++ G R K CF C K GH AK+C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNPATIM--IQKGNFRNQRKTVKCFNCGKEGHIAKNCRA 407
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 PRKKG------CWKCGKEGHQMKDC 426
>gi|242029060|gb|ACS76560.1| gag protein [Human immunodeficiency virus 1]
Length = 361
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 253 EAMSQVNSTNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 303
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 304 GREGHQMKDCTERQANFLGK 323
>gi|242029050|gb|ACS76555.1| gag protein [Human immunodeficiency virus 1]
Length = 361
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 253 EAMSQVNSTNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 303
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 304 GREGHQMKDCTERQANFLGK 323
>gi|255739665|gb|ACU31770.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V + ++ R RGPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQVNNTSIMMQRGNFRGPRRIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHLMKDCTEKQANFLGK 432
>gi|118426890|gb|ABK91196.1| gag protein [Human immunodeficiency virus 1]
Length = 168
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|299929889|gb|ADJ58152.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQHANIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GQEGHQMKDCTERQANFLGK 434
>gi|242029056|gb|ACS76558.1| gag protein [Human immunodeficiency virus 1]
Length = 361
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 253 EAMSQVNSTNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 303
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 304 GREGHQMKDCTERQANFLGK 323
>gi|242029052|gb|ACS76556.1| gag protein [Human immunodeficiency virus 1]
Length = 361
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 253 EAMSQVNSTNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 303
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 304 GREGHQMKDCTERQANFLGK 323
>gi|242029046|gb|ACS76553.1| gag protein [Human immunodeficiency virus 1]
Length = 361
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 253 EAMSQVNSTNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 303
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 304 GREGHQMKDCTERQANFLGK 323
>gi|407739110|gb|AFU31943.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQQANIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|341876702|gb|EGT32637.1| hypothetical protein CAEBREN_32053 [Caenorhabditis brenneri]
Length = 1129
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKDC 238
C NCGEEGH A +C K ++PC C + H R C + + C C + GH +K+C
Sbjct: 665 CRNCGEEGHFARDCPQP-KVERPCRNCNEVGHFSRDCPQPKVPFGPCRNCGEEGHFSKEC 723
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSC 265
K + + + C +CG+ GH + C
Sbjct: 724 -TKERVRLEPTEPCRRCGEEGHWGYEC 749
>gi|209576163|gb|ACI64051.1| gag protein [Human immunodeficiency virus 1]
Length = 107
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 4 EAMSQVQNANXMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 53
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 54 GKEGHQMKDCTERQANFLGK 73
>gi|118426896|gb|ABK91199.1| gag protein [Human immunodeficiency virus 1]
Length = 172
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|403264382|ref|XP_003924463.1| PREDICTED: zinc finger CCHC domain-containing protein 9-like
[Saimiri boliviensis boliviensis]
Length = 272
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C +A++ + C+ CGS EH + +C D CF+
Sbjct: 130 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 189
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
C + GH ++ CPD K + + C CG H C S + D + V
Sbjct: 190 CGEMGHPSRACPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSDRMVRV 239
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C+K GH DCP ++ +C +CG + H++ C+ +L
Sbjct: 121 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 180
Query: 273 DLKEVQCYICRCFGH---LCCVNISDAVPGEVSCFRCGQLGH 311
+ +C++C GH C N C CG + H
Sbjct: 181 EFPFAKCFVCGEMGHPSRACPDNPKGLYADGGGCKLCGSVEH 222
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVP 298
K ++ +NA VC C GH + C + D+ CY C H C D
Sbjct: 120 KRQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPAL 179
Query: 299 GEVS---CFRCGQLGH 311
GE CF CG++GH
Sbjct: 180 GEFPFAKCFVCGEMGH 195
>gi|300720183|gb|ADK33094.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 10/73 (13%)
Query: 158 SDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SXNIMMQRSNFKGPRKMI-------KCFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
>gi|148469896|gb|ABQ65885.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQNTNIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 413 GKEGHQMKDCTERQANFL 430
>gi|407739158|gb|AFU31985.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQQANIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|371559524|gb|AEX36701.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNTXIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|354497833|ref|XP_003511022.1| PREDICTED: zinc finger CCHC domain-containing protein 9-like
[Cricetulus griseus]
gi|344251598|gb|EGW07702.1| Zinc finger CCHC domain-containing protein 9 [Cricetulus griseus]
Length = 271
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C++ GH DCP +S +C +CG + H++ CR +L
Sbjct: 120 RQAAKKNAMVCFHCRRPGHGVADCPAALESQDMGTGICYRCGSTEHEITKCRARVDPALG 179
Query: 273 DLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+ +C++C GHL C N C CG + H
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCSENPKGVYADGGGCTLCGSVEH 221
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFIC 228
C++C GH +C +A++ + C+ CGS EH + +C D CF+C
Sbjct: 130 CFHCRRPGHGVADCPAALESQDMGTGICYRCGSTEHEITKCRARVDPALGEFPFAKCFVC 189
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
+ GH ++ C + K + + C CG H C + + D + V
Sbjct: 190 GEMGHLSRSCSENPKGVYADGGGCTLCGSVEHFKKDCPENQNSDRMVTV 238
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVP 298
K ++ +NA VC C GH + C + D+ CY C H C D
Sbjct: 119 KRQAAKKNAMVCFHCRRPGHGVADCPAALESQDMGTGICYRCGSTEHEITKCRARVDPAL 178
Query: 299 GEVS---CFRCGQLGH 311
GE CF CG++GH
Sbjct: 179 GEFPFAKCFVCGEMGH 194
>gi|209576191|gb|ACI64065.1| gag protein [Human immunodeficiency virus 1]
Length = 107
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 4 EAMSQVQSANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 53
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 54 GKEGHQMKDCTERQANFLGK 73
>gi|118426912|gb|ABK91207.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|118426854|gb|ABK91178.1| gag protein [Human immunodeficiency virus 1]
Length = 151
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|348682102|gb|EGZ21918.1| hypothetical protein PHYSODRAFT_251378 [Phytophthora sojae]
Length = 367
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 17/132 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C++CGE GHMA C + K + PC+ C H C C C + GH+ +DC ++
Sbjct: 238 CFHCGEVGHMASVCMND-KLQPPCYYCALRGHQSWACPNLP-CTNCLQLGHQERDCSNRS 295
Query: 243 KSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISD-AVPGEV 301
+ C CG +GH +C N+++LD+ C + N + G
Sbjct: 296 ----LDIDPCSICGRAGHIEDNCDNNHTLDE--------CDTYREPTATNFAARTASGRT 343
Query: 302 --SCFRCGQLGH 311
+C+ C + GH
Sbjct: 344 VQTCYECNEAGH 355
>gi|294992867|gb|ADF57549.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
CYNCG+EGH+A NCR+ RKK C+ CG H +R C++++ F+ K
Sbjct: 393 CYNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMRDCTESKAHFLGK 437
>gi|242029036|gb|ACS76548.1| gag protein [Human immunodeficiency virus 1]
Length = 361
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 253 EAMSQVNSTNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 303
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 304 GREGHQMKDCTERQANFLGK 323
>gi|242029034|gb|ACS76547.1| gag protein [Human immunodeficiency virus 1]
Length = 361
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 253 EAMSQVNSTNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 303
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 304 GREGHQMKDCTERQANFLGK 323
>gi|112351478|gb|ABI15267.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQNTNIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 413 GKEGHQMKDCTERQANFLGR 432
>gi|407739086|gb|AFU31922.1| gag protein [Human immunodeficiency virus 1]
gi|407739102|gb|AFU31936.1| gag protein [Human immunodeficiency virus 1]
gi|407739118|gb|AFU31950.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQQANIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|407739078|gb|AFU31915.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQQANIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|363583933|gb|AEW27498.1| gag protein [Human immunodeficiency virus 1]
Length = 489
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ +V + +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 358 EAMSQVNNANIMVQKSNFKGPRRIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKC 408
Query: 210 GSLEHGVRQCSKAQDCFICKKGGHRAKDCP 239
G H ++ C++ Q F+ K +K P
Sbjct: 409 GKEGHQMKDCTERQANFLGKIWPSHSKGRP 438
>gi|242027897|gb|ACS75984.1| gag protein [Human immunodeficiency virus 1]
Length = 453
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 345 EAMSQVNSTNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 395
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 396 GREGHQMKDCTERQANFLGK 415
>gi|259125591|gb|ACV93845.1| gag protein [Human immunodeficiency virus 1]
gi|259125594|gb|ACV93846.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ + ++ ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQAQHTNIMMQRGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
>gi|183206879|gb|ACC54610.1| gag protein [Human immunodeficiency virus 1]
Length = 163
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 34 EAMSQVQQTNIMMQKGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 83
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 84 GKEGHQMKDCTERQANFLGK 103
>gi|121945885|dbj|BAF44661.1| RNA helicase [Neobenedenia girellae]
Length = 634
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 51/133 (38%), Gaps = 31/133 (23%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
+ C C E GH+A C KKPC CG L H +C C C+ GH +DCP+
Sbjct: 31 RACNFCQETGHLAKECP-----KKPCRNCGELGHHRDECPAPPKCGNCRAEGHFIEDCPE 85
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVP 298
C CG GH +C + +C C GH C N
Sbjct: 86 P--------LTCRNCGQEGHMSSAC--------TEPAKCRECNEEGHQAKDCPN------ 123
Query: 299 GEVSCFRCGQLGH 311
C CG+LGH
Sbjct: 124 --AKCRNCGELGH 134
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 13/86 (15%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C NC EGH +C + C CG H C++ C C + GH+AKDCP
Sbjct: 70 CGNCRAEGHFIEDCPEPLT----CRNCGQEGHMSSACTEPAKCRECNEEGHQAKDCP--- 122
Query: 243 KSGFQNAQVCLKCGDSGHDMFSCRNS 268
NA+ C CG+ GH C N+
Sbjct: 123 -----NAK-CRNCGELGHRSRECNNA 142
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 44/105 (41%), Gaps = 20/105 (19%)
Query: 217 RQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH-----DMFSCRNSYSL 271
R C K Q C C + GH +DCP + + C C ++GH CRN L
Sbjct: 3 RDCEKPQTCRKCGETGHIGRDCPT-----VGDDRACNFCQETGHLAKECPKKPCRNCGEL 57
Query: 272 DDLKE-----VQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
++ +C CR GH I D P ++C CGQ GH
Sbjct: 58 GHHRDECPAPPKCGNCRAEGHF----IEDC-PEPLTCRNCGQEGH 97
>gi|409181520|gb|AFV26750.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNTNIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
>gi|407739166|gb|AFU31992.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQQANIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|259129283|gb|ACV95297.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ +V R RG + C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQQANIMVQRGNFRGQKRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQIKDCTERQANFLGK 434
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G + K CF C K GH AK+C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQQANIM--VQRGNFRGQKRIKCFNCGKEGHLAKNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH + C
Sbjct: 407 RKKG------CWKCGKEGHQIKDC 424
>gi|374350353|gb|AEZ35861.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 493
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ QD F+ K
Sbjct: 386 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCNERQDNFLGK 430
>gi|363583939|gb|AEW27503.1| gag protein [Human immunodeficiency virus 1]
Length = 489
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ +V + +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 358 EAMSQVNNANIMVQKSNFKGPRRIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKC 408
Query: 210 GSLEHGVRQCSKAQDCFICKKGGHRAKDCP 239
G H ++ C++ Q F+ K +K P
Sbjct: 409 GKEGHQMKDCTERQANFLGKIWPSHSKGRP 438
>gi|226345482|gb|ACO49236.1| gag protein [Human immunodeficiency virus 1]
Length = 133
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ ++ ++ R RGPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 2 EAMSQTNSANIMMQRNNFRGPRKIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKC 52
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 53 GQEGHQMKDCAERQANFLGK 72
>gi|118426824|gb|ABK91163.1| gag protein [Human immunodeficiency virus 1]
Length = 172
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|18699114|gb|AAL78393.1|AF413968_1 gag protein [Human immunodeficiency virus 1]
Length = 219
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 86 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 135
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 136 GKEGHQMKNCTERQANFL 153
>gi|56609321|gb|AAW03274.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQNTNIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 413 GKEGHQMKDCTERQANFL 430
>gi|407739126|gb|AFU31957.1| gag protein [Human immunodeficiency virus 1]
gi|407739142|gb|AFU31971.1| gag protein [Human immunodeficiency virus 1]
gi|407739150|gb|AFU31978.1| gag protein [Human immunodeficiency virus 1]
gi|407739182|gb|AFU32006.1| gag protein [Human immunodeficiency virus 1]
gi|407739190|gb|AFU32013.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQQANIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|387019991|gb|AFJ52113.1| Zinc finger CCHC domain-containing protein 9-like [Crotalus
adamanteus]
Length = 263
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 14/114 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C + ++ + C+ CGS EH + +C D CFI
Sbjct: 121 VCFHCRKPGHGVADCPAVLESQDMGTGICYRCGSTEHEINKCKAKIDPALGEFPYAKCFI 180
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYI 281
C + GH ++ CPD K + C CG H C + S D V +I
Sbjct: 181 CGEMGHLSRSCPDNPKGLYAEGGSCRICGSVEHFKRDCPENQSSDRAVTVGRWI 234
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLDDLKEVQCYIC 282
CF C+K GH DCP +S +C +CG + H++ C+ +L + +C+IC
Sbjct: 122 CFHCRKPGHGVADCPAVLESQDMGTGICYRCGSTEHEINKCKAKIDPALGEFPYAKCFIC 181
Query: 283 RCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
GHL C N SC CG + H
Sbjct: 182 GEMGHLSRSCPDNPKGLYAEGGSCRICGSVEH 213
>gi|371559474|gb|AEX36656.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNTNIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GREGHQMKDCTERQANFLGR 434
>gi|339786812|gb|AEK11572.1| gag protein [Human immunodeficiency virus 1]
gi|402229547|gb|AFQ36642.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 491
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 10/75 (13%)
Query: 156 EISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEH 214
+ NI++ R L+GPR C+NCG+EGH+A NCR+ RKK C+ CG H
Sbjct: 366 QTQSNILMQRSNLKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKCGKEGH 416
Query: 215 GVRQCSKAQDCFICK 229
++ C++ Q F+ K
Sbjct: 417 QMKDCTERQANFLGK 431
>gi|195954537|gb|ACG58961.1| gag protein [Human immunodeficiency virus 1]
gi|238734305|gb|ACR55525.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNTNIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
>gi|148469876|gb|ABQ65867.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 413 GKEGHQMKDCTERQANFL 430
>gi|118426892|gb|ABK91197.1| gag protein [Human immunodeficiency virus 1]
Length = 150
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|6651471|gb|AAF22319.1|AF193276_1 gag polyprotein [HIV-1 CRF03_AB]
Length = 498
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
>gi|409181510|gb|AFV26741.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 361 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWRC 410
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 411 GKEGHQMKDCTERQANFLGR 430
>gi|407740579|gb|AFU33165.1| gag protein [Human immunodeficiency virus 1]
Length = 489
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E +++V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSSVQHANIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
>gi|371559514|gb|AEX36692.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
>gi|242029032|gb|ACS76546.1| gag protein [Human immunodeficiency virus 1]
Length = 361
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 253 EAMSQVNSTNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 303
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 304 GREGHQMKDCTERQANFLGK 323
>gi|242027899|gb|ACS75985.1| gag protein [Human immunodeficiency virus 1]
Length = 453
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 345 EAMSQVNSTNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 395
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 396 GREGHQMKDCTERQANFLGK 415
>gi|227057940|gb|ACP18932.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 10/73 (13%)
Query: 158 SDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 STNIMMQRSNFKGPRRII-------KCFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
>gi|148469916|gb|ABQ65903.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQNTNIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 413 GKEGHQMKDCTERQANFL 430
>gi|112351538|gb|ABI15321.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ + ++ ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQAQNTNIMMQRSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 413 GKEGHQMKDCTERQANFL 430
>gi|68482666|ref|XP_714730.1| hypothetical protein CaO19.10692 [Candida albicans SC5314]
gi|68482937|ref|XP_714599.1| hypothetical protein CaO19.3182 [Candida albicans SC5314]
gi|46436181|gb|EAK95548.1| hypothetical protein CaO19.3182 [Candida albicans SC5314]
gi|46436321|gb|EAK95685.1| hypothetical protein CaO19.10692 [Candida albicans SC5314]
gi|238882592|gb|EEQ46230.1| zinc-finger protein GIS2 [Candida albicans WO-1]
Length = 175
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 44/94 (46%), Gaps = 16/94 (17%)
Query: 183 CYNCGEEGHMAVNCRSAVKR-------KKP--------CFVCGSLEHGVRQC-SKAQDCF 226
CYNCG+ GH++ NC SA K+P C+ CG H R C + C+
Sbjct: 75 CYNCGQFGHISKNCDSAPSSTNNAPSFKRPSGRASGTTCYKCGGPNHFARDCQANTVKCY 134
Query: 227 ICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C K GH +KDC +A+ C CG SGH
Sbjct: 135 ACGKVGHISKDCHSSAGGSNFSAKTCYNCGKSGH 168
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 25/147 (17%)
Query: 183 CYNCGEEGHMAVNCRSAVKR-KKPCFVCGSLEHGVRQC---SKAQDCFICKKGGHRAKDC 238
CYNC + GH + +C + K C+ CG + H +C ++ C+ C + GH +K+C
Sbjct: 29 CYNCHKPGHESNDCPDPKQNTAKQCYSCGDVGHIQTECPNQAQGAKCYNCGQFGHISKNC 88
Query: 239 ----------PD-KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGH 287
P K SG + C KCG H C+ V+CY C GH
Sbjct: 89 DSAPSSTNNAPSFKRPSGRASGTTCYKCGGPNHFARDCQ-------ANTVKCYACGKVGH 141
Query: 288 L---CCVNISDAVPGEVSCFRCGQLGH 311
+ C + + +C+ CG+ GH
Sbjct: 142 ISKDCHSSAGGSNFSAKTCYNCGKSGH 168
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 48/134 (35%), Gaps = 27/134 (20%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--------- 224
DP + CY+CG+ GH+ C + + K C+ CG H + C A
Sbjct: 44 DPKQNTAKQCYSCGDVGHIQTECPNQAQGAK-CYNCGQFGHISKNCDSAPSSTNNAPSFK 102
Query: 225 ----------CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
C+ C H A+DC N C CG GH C +S +
Sbjct: 103 RPSGRASGTTCYKCGGPNHFARDCQ-------ANTVKCYACGKVGHISKDCHSSAGGSNF 155
Query: 275 KEVQCYICRCFGHL 288
CY C GH+
Sbjct: 156 SAKTCYNCGKSGHI 169
>gi|56609301|gb|AAW03256.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 413 GKEGHQMKDCTERQANFL 430
>gi|396075540|gb|AFN81261.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ S ++ R RG R C+NCG+EGH+A NC++ RK+ C+ C
Sbjct: 362 EAMSQVQQSSIMMQRGNFRGQRTIK--------CFNCGKEGHLARNCKAP--RKRGCWKC 411
Query: 210 GSLEHGVRQCSKAQDCFICKKGGHRAK 236
G H ++ C++ Q F+ K H+ +
Sbjct: 412 GKEGHQMKDCTERQANFLGKIWPHKGR 438
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G + + CF C K GH A++C
Sbjct: 346 ACQGVGGPGHKARVLAEAMSQVQQSSIM--MQRGNFRGQRTIKCFNCGKEGHLARNCKAP 403
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 404 RKRG------CWKCGKEGHQMKDC 421
>gi|299929797|gb|ADJ58106.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQNANIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GQEGHQMKDCTERQANFLGK 434
>gi|259124678|gb|ACV93470.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 495
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V+ ++NI++ R RG + C+NCG+EGH+A NCR+ RKK C+
Sbjct: 362 EAMSQVQNTNNIMMQRGNFRGQKRIK--------CFNCGKEGHLARNCRAP--RKKGCWK 411
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 412 CGKEGHQMKDCTERQANFLGK 432
>gi|183206876|gb|ACC54608.1| gag protein [Human immunodeficiency virus 1]
Length = 163
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 34 EAMSQVQQTNIMMQKGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 83
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 84 GKEGHQMKDCTERQANFLGK 103
>gi|118426886|gb|ABK91194.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQGANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 69 GKEGHQMKDCTERQANFL 86
>gi|55979892|gb|AAV69361.1| gag protein [Human immunodeficiency virus 1]
Length = 142
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|56609311|gb|AAW03265.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQNTNIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 413 GKEGHQMKDCTERQANFLGR 432
>gi|242030235|gb|ACS77131.1| gag protein [Human immunodeficiency virus 1]
Length = 460
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ I++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 345 EAMSQATIANIMMQRVNFKGPRRTI-------KCFNCGKEGHLARNCRAP--RKKGCWKC 395
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 396 GQEGHQMKDCTERQANFLGK 415
>gi|124389776|gb|ABN11070.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ + +V R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQAQHQTIMVQRGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARILAEAMSQAQHQTIM--VQRGNFRGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|55979894|gb|AAV69362.1| gag protein [Human immunodeficiency virus 1]
Length = 143
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|56609241|gb|AAW03202.1| gag protein [Human immunodeficiency virus 1]
gi|56609291|gb|AAW03247.1| gag protein [Human immunodeficiency virus 1]
gi|56609327|gb|AAW03279.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 413 GKEGHQMKDCTERQANFL 430
>gi|56609261|gb|AAW03220.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 413 GKEGHQMKDCTERQANFL 430
>gi|56609271|gb|AAW03229.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 413 GKEGHQMKDCTERQANFL 430
>gi|55979904|gb|AAV69367.1| gag protein [Human immunodeficiency virus 1]
Length = 128
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|55979884|gb|AAV69357.1| gag protein [Human immunodeficiency virus 1]
Length = 149
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|334884454|gb|AEH21338.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 494
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ + ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 361 EAMSQAQHANIMMQRXNFKGPRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 410
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 411 GKEGHQMKDCTERQANFL 428
Score = 37.4 bits (85), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 386 CFNCGKEGHLAKNCRAPRKKG------CWKCGKEGHQMKDC 420
>gi|259127096|gb|ACV94419.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVHQTNIMMQRGNFRGQRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + ++ G + + CF C K GH AK+C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVHQTNIM--MQRGNFRGQRRIKCFNCGKEGHLAKNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|226345098|gb|ACO49049.1| gag protein [Human immunodeficiency virus 1]
Length = 132
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 2 EAMSPVNSTNIMMQRSNFKGPRRII-------KCFNCGKEGHIAKNCRAP--RKKGCWKC 52
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 53 GREGHQMKDCTERQANFLGK 72
>gi|206129499|gb|ACI05350.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +R C++ Q F+ K
Sbjct: 387 CFNCGKEGHLAKNCRAP--RKKGCWKCGREGHQMRDCTEGQANFLGK 431
>gi|31980426|dbj|BAC77746.1| Gag polyprotein [Human immunodeficiency virus 1]
gi|31980436|dbj|BAC77755.1| Gag polyprotein [Human immunodeficiency virus 1]
Length = 498
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +RG + C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHTNIMMQRGSIRGQKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQHTNIM--MQRGSIRGQKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|386306656|gb|AFJ05312.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 496
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +R+C++ Q F+ K
Sbjct: 388 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMRECTERQANFLGK 432
Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMREC 422
>gi|299929705|gb|ADJ58060.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQHTNVMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|259127085|gb|ACV94416.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVHQTNIMMQRGNFRGQRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + ++ G + + CF C K GH AK+C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVHQTNIM--MQRGNFRGQRRIKCFNCGKEGHLAKNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|259124693|gb|ACV93475.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 495
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V+ ++NI++ R RG + C+NCG+EGH+A NCR+ RKK C+
Sbjct: 362 EAMSQVQNTNNIMMQRGNFRGQKRIK--------CFNCGKEGHLARNCRAP--RKKGCWK 411
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 412 CGKEGHQMKDCTERQANFLGK 432
>gi|156055020|ref|XP_001593434.1| hypothetical protein SS1G_04861 [Sclerotinia sclerotiorum 1980]
gi|154702646|gb|EDO02385.1| hypothetical protein SS1G_04861 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 210
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 67/182 (36%), Gaps = 56/182 (30%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA------------- 222
P RG CYNC GH++ +C K +K C+ CG+ H + CS
Sbjct: 30 PSRGPAKCYNCDNPGHLSRDCPEGPK-EKVCYRCGTSGHISKDCSNPPTEGAGRGGGYGG 88
Query: 223 -------QDCFICKKGGHRAKDCPD--------------------KHKSGFQNAQVCLKC 255
Q C+ C K GH A++CP+ Q +Q C C
Sbjct: 89 GYGGGGGQQCYKCSKIGHIARNCPEAGGYGGNQGYGGNQGGYGGGFGGGARQGSQTCFSC 148
Query: 256 GDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGHT 312
G GH S D + +CY C GHL C S+A C+ C Q GH
Sbjct: 149 GGYGH--------LSRDCTQGQKCYNCGEVGHLSRDCSQETSEA----RRCYECKQEGHE 196
Query: 313 GL 314
L
Sbjct: 197 KL 198
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 28/109 (25%)
Query: 181 QTCYNCGEEGHMAVNCRSAV------------------------KRKKPCFVCGSLEHGV 216
Q CY C + GH+A NC A + + CF CG H
Sbjct: 96 QQCYKCSKIGHIARNCPEAGGYGGNQGYGGNQGGYGGGFGGGARQGSQTCFSCGGYGHLS 155
Query: 217 RQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
R C++ Q C+ C + GH ++DC + A+ C +C GH+ C
Sbjct: 156 RDCTQGQKCYNCGEVGHLSRDCSQE----TSEARRCYECKQEGHEKLDC 200
>gi|320166376|gb|EFW43275.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 1075
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 171 RYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKK 230
RYF D G C+NC + GH++ +C + +R PC++CG H +C Q C+ C
Sbjct: 351 RYFVGFDAGRIRCHNCDQMGHISRDCPNK-RRVSPCYLCGEPGHTRFKCPN-QTCYACFG 408
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCC 290
GH +DC + + +C +C GH +C + + + C L
Sbjct: 409 AGHMMRDC---RRRAAKPHILCRRCKMRGHFEANCTDVWRQYHHQHAALRESSCRDFLGF 465
Query: 291 VNISD 295
N+ D
Sbjct: 466 PNLRD 470
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 14/87 (16%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRC 284
C C + GH ++DCP+K + C CG+ GH F C N CY C
Sbjct: 363 CHNCDQMGHISRDCPNKRR-----VSPCYLCGEPGHTRFKCPNQ---------TCYACFG 408
Query: 285 FGHLCCVNISDAVPGEVSCFRCGQLGH 311
GH+ A + C RC GH
Sbjct: 409 AGHMMRDCRRRAAKPHILCRRCKMRGH 435
>gi|242029040|gb|ACS76550.1| gag protein [Human immunodeficiency virus 1]
Length = 358
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 250 EAMSQVNSTNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 300
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 301 GREGHQMKDCTERQANFLGK 320
>gi|209576167|gb|ACI64053.1| gag protein [Human immunodeficiency virus 1]
Length = 107
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 4 EAMSQVQNTNIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 53
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 54 GKEGHQMKDCTERQANFLGK 73
>gi|158297099|ref|XP_317381.3| AGAP008075-PA [Anopheles gambiae str. PEST]
gi|157015032|gb|EAA12317.4| AGAP008075-PA [Anopheles gambiae str. PEST]
Length = 153
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 62/149 (41%), Gaps = 30/149 (20%)
Query: 181 QTCYNCGEEGHMAVNCRSA----------------VKRKKPCFVCGSLEHGVRQCSKAQD 224
TC+ C GH A +C++ R++ C+ C + H R C + D
Sbjct: 5 NTCFKCDRPGHYARDCQNVGGGGGRGVGGPRDRRDFGRREKCYKCNQMGHFARDCKEDLD 64
Query: 225 -CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C GH A+DC S + C C SGH +C D V CY C
Sbjct: 65 RCYRCNGSGHIARDC-----SLSPDDSCCYNCNQSGHLARNCPEKSDRD--MNVSCYNCN 117
Query: 284 CFGHLCCVNISDAVP-GEVSCFRCGQLGH 311
GH IS P G+ SC+ CG++GH
Sbjct: 118 KSGH-----ISRNCPSGDKSCYSCGKIGH 141
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKK--PCFVCGSLEHGVRQC-SKAQDCFICKKGGHRAKDC 238
CYNC + GH+A NC R C+ C H R C S + C+ C K GH ++DC
Sbjct: 88 CYNCNQSGHLARNCPEKSDRDMNVSCYNCNKSGHISRNCPSGDKSCYSCGKIGHLSRDC 146
>gi|259124097|gb|ACV93373.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHPNIMMQKGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + + P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKAGVLAEAMSQVQHPNIM---MQKGNFRGPKRIKCFNCGKEGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKDC 424
>gi|259124095|gb|ACV93372.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K RGP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + + P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQHPNIM---MQKGNFRGPKRIKCFNCGKEGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKDC 424
>gi|55139287|gb|AAV41308.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSNVNNANIMMQRSNFKGPRRIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
>gi|299115494|emb|CBN75658.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 351
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 38/99 (38%), Gaps = 9/99 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD---------CFICKKGGH 233
C C GH+ NC A CF CGS +H +R C + CFICK GH
Sbjct: 99 CLGCRAWGHIVANCPEAKAATGICFNCGSAKHALRVCPAPKQKDGSLPYATCFICKAKGH 158
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
+ C + C CG H + C S +D
Sbjct: 159 ISAHCKQNANGVYPKGGFCKWCGSKHHLSWDCPESTKVD 197
>gi|259124688|gb|ACV93473.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V+ ++NI++ R RG + C+NCG+EGH+A NCR+ RKK C+
Sbjct: 363 EAMSQVQNTNNIMMQRGNFRGQKRIK--------CFNCGKEGHLARNCRAP--RKKGCWK 412
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 413 CGKEGHQMKDCTERQANFLGK 433
>gi|225056148|gb|ACN80880.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 10/81 (12%)
Query: 150 EGVTTVEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V S ++++K RGP+ C+NCG+EGH+A NCR+ RKK C+
Sbjct: 364 EAMSQVTNSATVMMQKSNFRGPKRTV-------KCFNCGKEGHIAKNCRAP--RKKGCWK 414
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H +++C++ Q F+ K
Sbjct: 415 CGKEGHQMKECTERQANFLGK 435
>gi|222428364|gb|ACM50021.1| gag protein [Human immunodeficiency virus 1]
Length = 501
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++CS+ Q F+ K
Sbjct: 393 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECSERQANFLGK 437
>gi|299929799|gb|ADJ58107.1| gag protein [Human immunodeficiency virus 1]
Length = 486
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ + ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQAQHANVMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 37.7 bits (86), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + V ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQHANVM--MQRGNFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|259129312|gb|ACV95310.1| gag protein [Human immunodeficiency virus 1]
gi|259129344|gb|ACV95321.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHTNIMMQRSNFRGQRRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GREGHQMKDCTERQANFLGK 434
>gi|213138293|gb|ACJ44810.1| gag protein [Human immunodeficiency virus 1]
Length = 490
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 10/75 (13%)
Query: 156 EISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEH 214
+ + NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H
Sbjct: 366 QANSNIMMQKSNFKGPRRII-------KCFNCGKEGHLAKNCRAP--RKKGCWKCGKEGH 416
Query: 215 GVRQCSKAQDCFICK 229
++ C++ Q F+ K
Sbjct: 417 QMKDCTERQANFLGK 431
Score = 37.4 bits (85), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHLAKNCRAPRKKG------CWKCGKEGHQMKDC 421
>gi|451168215|gb|AGF30924.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 372 NIMMQKGNFKGPRRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGQEGHQMKD 421
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 422 CTERQANFLGK 432
Score = 37.4 bits (85), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + + ++ G + + CF C K GH A++C
Sbjct: 348 CQGVGGPGHKARVLAEAMSQVNNANIM--MQKGNFKGPRRIKCFNCGKEGHLARNCRAPR 405
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 KKG------CWKCGQEGHQMKDC 422
>gi|259127116|gb|ACV94427.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVHQTNIMMQRGNFRGQRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + ++ G + + CF C K GH AK+C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVHQTNIM--MQRGNFRGQRRIKCFNCGKEGHLAKNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|259125662|gb|ACV93874.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHPNIMMQKGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + + P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQHPNIM---MQKGNFRGPKRIKCFNCGKEGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKDC 424
>gi|259124159|gb|ACV93403.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHPNIMMQKGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + + P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQHPNIM---MQKGNFRGPKRIKCFNCGKEGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKDC 424
>gi|225056150|gb|ACN80881.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 10/81 (12%)
Query: 150 EGVTTVEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V S ++++K RGP+ C+NCG+EGH+A NCR+ RKK C+
Sbjct: 364 EAMSQVTNSATVMMQKSNFRGPKRTV-------KCFNCGKEGHIAKNCRAP--RKKGCWK 414
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H +++C++ Q F+ K
Sbjct: 415 CGKEGHQMKECTERQANFLGK 435
Score = 37.4 bits (85), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 391 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKEC 425
>gi|209576111|gb|ACI64025.1| gag protein [Human immunodeficiency virus 1]
Length = 107
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 4 EAMSQVQNANIMLQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 53
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 54 GKEGHQMKDCTERQANFLGK 73
>gi|171677448|ref|XP_001903675.1| hypothetical protein [Podospora anserina S mat+]
gi|170936792|emb|CAP61450.1| unnamed protein product [Podospora anserina S mat+]
Length = 229
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 51/124 (41%), Gaps = 29/124 (23%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP-------------------------CFVCGSLEHGVR 217
CY CG+ H+A NC SA P C+ CG H R
Sbjct: 88 CYTCGQPNHIARNCPSAQGGMAPGPMPGRGGFGPARGGFHPGGARHATCYKCGGPNHYAR 147
Query: 218 QC-SKAQDCFICKKGGHRAKDCPDKHKSGFQNA-QVCLKCGDSGHDMFSC--RNSYSLDD 273
C ++A C+ C K GH ++DC + A + C +CG++GH C RN + D
Sbjct: 148 DCQAQAMKCYACGKLGHISRDCTAPNGGPLNTAGKTCYQCGEAGHISRDCPKRNGANGAD 207
Query: 274 LKEV 277
EV
Sbjct: 208 APEV 211
Score = 43.9 bits (102), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Query: 173 FDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC---------SKAQ 223
F P TCY CG H A +C++ + C+ CG L H R C + +
Sbjct: 126 FHPGGARHATCYKCGGPNHYARDCQAQAMK---CYACGKLGHISRDCTAPNGGPLNTAGK 182
Query: 224 DCFICKKGGHRAKDCPDK 241
C+ C + GH ++DCP +
Sbjct: 183 TCYQCGEAGHISRDCPKR 200
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 53/142 (37%), Gaps = 21/142 (14%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP------CFVCGSLEHGVRQCSKAQDCFICKKGGHRAK 236
CY+C GH+ C + P C+ CG H R C AQ R
Sbjct: 59 CYHCQGVGHVQAECPTMRLNGGPGGPHNRCYTCGQPNHIARNCPSAQGGMAPGPMPGRGG 118
Query: 237 DCPDK---HKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL----C 289
P + H G ++A C KCG H C+ + ++CY C GH+
Sbjct: 119 FGPARGGFHPGGARHA-TCYKCGGPNHYARDCQ-------AQAMKCYACGKLGHISRDCT 170
Query: 290 CVNISDAVPGEVSCFRCGQLGH 311
N +C++CG+ GH
Sbjct: 171 APNGGPLNTAGKTCYQCGEAGH 192
>gi|242027589|gb|ACS75831.1| gag protein [Human immunodeficiency virus 1]
Length = 464
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 10/71 (14%)
Query: 160 NIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI++ R +GPR C+NCGEEGH+A NCR+ RKK C+ CG H ++
Sbjct: 359 NILMQRSNFKGPRRI-------VKCFNCGEEGHIARNCRAP--RKKGCWKCGKEGHQMKD 409
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 410 CTERQANFLGK 420
>gi|259128114|gb|ACV94816.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R RG + C+NCGEEGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHTNILMQRGNFRGQKRIK--------CFNCGEEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
>gi|259124667|gb|ACV93467.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V+ ++NI++ R RG + C+NCG+EGH+A NCR+ RKK C+
Sbjct: 363 EAMSQVQNTNNIMMQRGNFRGQKRIK--------CFNCGKEGHLARNCRAP--RKKGCWK 412
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 413 CGKEGHQMKDCTERQANFLGK 433
>gi|209576159|gb|ACI64049.1| gag protein [Human immunodeficiency virus 1]
Length = 107
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 4 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 53
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 54 GKEGHQMKDCTERQANFLGK 73
>gi|55979909|gb|AAV69369.1| gag protein [Human immunodeficiency virus 1]
Length = 151
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 20 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 69
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 70 GKEGHQMKDCTERQANFLGK 89
>gi|55979927|gb|AAV69377.1| gag protein [Human immunodeficiency virus 1]
Length = 145
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|55979888|gb|AAV69359.1| gag protein [Human immunodeficiency virus 1]
Length = 147
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 20 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 69
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 70 GKEGHQMKDCTERQANFLGK 89
>gi|259125625|gb|ACV93859.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHPNIMMQKGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + + P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQHPNIM---MQKGNFRGPKRIKCFNCGKEGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKDC 424
>gi|255739647|gb|ACU31761.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 11/73 (15%)
Query: 158 SDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S+NI++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SNNIMMQRSNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQM 418
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 419 KDCTERQANFLGK 431
>gi|56608671|gb|AAW02969.1| gag protein [Human immunodeficiency virus 1]
gi|213137147|gb|ACJ44258.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 10/73 (13%)
Query: 158 SDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI+++K +GPR C+NCG EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 STNIMMQKSNFKGPRRIV-------KCFNCGREGHIARNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
>gi|3132801|gb|AAC29068.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ S+ ++ R RG R C+NCG+EGH+A NC++ RKK C+ C
Sbjct: 362 EAMSQVQQSNIMMQRGNFRGQRTIK--------CFNCGKEGHLARNCKAP--RKKGCWKC 411
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 412 GKEGHQMKDCTEGQANFLGK 431
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + + + ++ G + + CF C K GH A++C
Sbjct: 347 CQGVGGPGHKARVLAEAMSQVQQSNIM--MQRGNFRGQRTIKCFNCGKEGHLARNCKAPR 404
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 405 KKG------CWKCGKEGHQMKDC 421
>gi|2570320|gb|AAC97580.1| gag polyprotein [Human immunodeficiency virus 1]
Length = 497
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 173 FDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
F P RG + C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 384 FKGPRRGIK-CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 437
>gi|336273387|ref|XP_003351448.1| hypothetical protein SMAC_07647 [Sordaria macrospora k-hell]
gi|380089245|emb|CCC12804.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 227
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRA 235
+ CY CGE GH A C S + C+ C H +C ++A+ C+ C+ GH
Sbjct: 7 RACYKCGELGHHAEACSSPHRL---CYNCKQPNHESSECPLPRSTEAKQCYHCQGLGHVQ 63
Query: 236 KDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
DCP SG + C CG GH M +C N
Sbjct: 64 ADCPTLRISGAGSTSRCYNCGQPGHYMRACPN 95
Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 12/69 (17%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK---------AQDCFICKKGG 232
TCY CG H A +C++ + C+ CG L H R C+ + C+ C + G
Sbjct: 129 TCYKCGGPNHFARDCQAQAMK---CYACGKLGHISRDCTAPNGGPLNTAGKTCYQCSETG 185
Query: 233 HRAKDCPDK 241
H ++DCP+K
Sbjct: 186 HISRDCPNK 194
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 43/114 (37%), Gaps = 29/114 (25%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP---------------------------CFVCGSLEHG 215
CYNCG+ GH C + P C+ CG H
Sbjct: 80 CYNCGQPGHYMRACPNPPTGGMPQRGVPVGRGGFGGFGRGGFVGGARPATCYKCGGPNHF 139
Query: 216 VRQC-SKAQDCFICKKGGHRAKDCPDKHKSGFQNA-QVCLKCGDSGHDMFSCRN 267
R C ++A C+ C K GH ++DC + A + C +C ++GH C N
Sbjct: 140 ARDCQAQAMKCYACGKLGHISRDCTAPNGGPLNTAGKTCYQCSETGHISRDCPN 193
>gi|300719973|gb|ADK32954.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCP 239
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K R K P
Sbjct: 387 CFNCGKEGHIAKNCRAP--RKKGCWKCGQEGHQMKDCTERQANFLGKIWPSRXKGRP 441
>gi|259124674|gb|ACV93468.1| gag protein, partial [Human immunodeficiency virus 1]
gi|259124684|gb|ACV93472.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 495
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V+ ++NI++ R RG + C+NCG+EGH+A NCR+ RKK C+
Sbjct: 362 EAMSQVQNTNNIMMQRGNFRGQKRIK--------CFNCGKEGHLARNCRAP--RKKGCWK 411
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 412 CGKEGHQMKDCTERQANFLGK 432
>gi|183206858|gb|ACC54596.1| gag protein [Human immunodeficiency virus 1]
Length = 175
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 43 EAMSQVQHTNILMQRSNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 92
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 93 GKEGHQMKDCTERQANFL 110
>gi|118426966|gb|ABK91234.1| gag protein [Human immunodeficiency virus 1]
Length = 157
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 69 GKEGHQMKDCTERQANFL 86
>gi|223951319|gb|ACN29603.1| gag protein [Human immunodeficiency virus 1]
Length = 501
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +R C++ Q F+ K
Sbjct: 393 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQIRDCTERQANFLGK 437
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + ++ G R K CF C K GH AK+C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQATNSAAAIMMQKGNFRNQRKPVKCFNCGKEGHIAKNCRAP 409
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH + C
Sbjct: 410 RKKG------CWKCGKEGHQIRDC 427
>gi|213138166|gb|ACJ44754.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 361 EAMSNVNNANIMMQRSNFKGPRRI-------VKCFNCGKEGHIARNCRAP--RKKGCWKC 411
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 412 GKEGHQMKDCTERQANFLGK 431
>gi|195954500|gb|ACG58943.1| gag protein [Human immunodeficiency virus 1]
gi|238733837|gb|ACR55113.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V S NI++ R RG + C+NCG+EGH+A NCR+ RKK C+
Sbjct: 365 EAMSQVTTSTNIMMQRGNFRGQKNIK--------CFNCGKEGHLARNCRAP--RKKGCWK 414
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 415 CGKEGHQMKDCTERQANFLGK 435
>gi|209576115|gb|ACI64027.1| gag protein [Human immunodeficiency virus 1]
Length = 107
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 4 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 53
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 54 GKEGHQMKDCTERQANFLGK 73
>gi|281331901|emb|CAY83112.1| gag polyprotein [Human immunodeficiency virus 1]
Length = 493
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E +++++ ++ ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 360 EAMSSLQNANIMMQRGNXRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 409
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 410 GKEGHQMKDCNERQANFLGK 429
Score = 37.4 bits (85), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 372 MQRGNXRGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 419
>gi|194500415|gb|ACF75456.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K RGP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQAQKTNIM--MQKGNFRGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|33088368|gb|AAP93226.1| gag protein [Human immunodeficiency virus 1]
Length = 154
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 24 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 73
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 74 GKEGHQMKDCTERQANFLGK 93
>gi|61557124|ref|NP_001013174.1| zinc finger CCHC domain-containing protein 9 [Rattus norvegicus]
gi|54035475|gb|AAH83695.1| Zinc finger, CCHC domain containing 9 [Rattus norvegicus]
gi|149059001|gb|EDM10008.1| zinc finger, CCHC domain containing 9, isoform CRA_b [Rattus
norvegicus]
Length = 271
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C++ GH DCP +S +C +CG + H+M CR + +L
Sbjct: 120 RQAAKKNAMVCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMTKCRANVDPALG 179
Query: 273 DLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+ +C++C GHL C N C CG + H
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNTKGVYADGGGCKLCGSVEH 221
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 14/110 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C + ++ + C+ CGS EH + +C D CF+
Sbjct: 129 VCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMTKCRANVDPALGEFPFAKCFV 188
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
C + GH ++ CPD K + + C CG H C + + D + V
Sbjct: 189 CGEMGHLSRSCPDNTKGVYADGGGCKLCGSVEHFKKDCPENQNSDRIITV 238
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 14/89 (15%)
Query: 170 PRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRK------KPCFVCGSLEHGVRQC---- 219
P + D G CY CG H CR+ V CFVCG + H R C
Sbjct: 144 PAVLESQDMGTGICYRCGSTEHEMTKCRANVDPALGEFPFAKCFVCGEMGHLSRSCPDNT 203
Query: 220 ----SKAQDCFICKKGGHRAKDCPDKHKS 244
+ C +C H KDCP+ S
Sbjct: 204 KGVYADGGGCKLCGSVEHFKKDCPENQNS 232
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGH---LCCVNISDAV 297
K ++ +NA VC C GH + C D+ CY C H C N+ A+
Sbjct: 119 KRQAAKKNAMVCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMTKCRANVDPAL 178
Query: 298 PGEVS---CFRCGQLGH 311
GE CF CG++GH
Sbjct: 179 -GEFPFAKCFVCGEMGH 194
>gi|320410166|gb|ADW26871.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V S NI+++ RG F P R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVTNSANIMMQ---RG--NFRP-QRKXVKCFNCGKEGHIAKNCRAP--RKKGCWKC 416
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 417 GKEGHQIKDCTERQANFLGK 436
>gi|225056160|gb|ACN80885.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 10/81 (12%)
Query: 150 EGVTTVEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V S ++++K RGP+ C+NCG+EGH+A NCR+ RKK C+
Sbjct: 364 EAMSQVTNSATVMMQKSDFRGPKRTV-------KCFNCGKEGHIAKNCRAP--RKKGCWK 414
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H +++C++ Q F+ K
Sbjct: 415 CGKEGHQMKECTERQANFLGK 435
>gi|209576083|gb|ACI64011.1| gag protein [Human immunodeficiency virus 1]
gi|209576185|gb|ACI64062.1| gag protein [Human immunodeficiency virus 1]
Length = 107
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 4 EAMSQVQNTNIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 53
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 54 GKEGHQMKDCTERQANFLGK 73
>gi|119361874|gb|ABL66879.1| gag protein [Human immunodeficiency virus 1]
Length = 369
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K RGP+ C+NCG+EGH+A NCR+ RKK C+ CG+ H ++
Sbjct: 245 NIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGNEGHQMKD 294
Query: 219 CSKAQDCFICK 229
C++ Q F+ +
Sbjct: 295 CTERQTNFLGR 305
>gi|118426814|gb|ABK91158.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 69 GKEGHQMKDCTERQANFL 86
>gi|55979896|gb|AAV69363.1| gag protein [Human immunodeficiency virus 1]
Length = 144
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|112982721|ref|NP_001037117.1| zinc finger protein [Bombyx mori]
gi|59858992|gb|AAX09282.1| zinc finger protein [Bombyx mori]
Length = 143
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 17/116 (14%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD---CFICKKGGH 233
+R + C+ C GH A +C+ R C+ C H R+C+++ D C+ C K GH
Sbjct: 32 NRQREKCFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECAQSPDEPSCYNCNKTGH 88
Query: 234 RAKDCPDKHKSGFQNA-QVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
A++CP+ G ++A Q C C SGH +C D K CY+C GH+
Sbjct: 89 IARNCPE---GGRESATQTCYNCNKSGHISRNC-----PDGTK--TCYVCGKPGHI 134
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 56/143 (39%), Gaps = 29/143 (20%)
Query: 183 CYNCGEEGHMAVNCRSAV---------KRKKPCFVCGSLEHGVRQCSKAQD-CFICKKGG 232
CY C GH A C ++++ CF C H R C + D C+ C G
Sbjct: 6 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 65
Query: 233 HRAKDC---PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC 289
H A++C PD+ C C +GH +C + CY C GH
Sbjct: 66 HIARECAQSPDE--------PSCYNCNKTGHIARNC--PEGGRESATQTCYNCNKSGH-- 113
Query: 290 CVNISDAVP-GEVSCFRCGQLGH 311
IS P G +C+ CG+ GH
Sbjct: 114 ---ISRNCPDGTKTCYVCGKPGH 133
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD 224
QTCYNC + GH++ NC K C+VCG H R+C +A++
Sbjct: 103 QTCYNCNKSGHISRNCPDGTK---TCYVCGKPGHISRECDEARN 143
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRK--KPCFVCGSLEHGVRQCSKA-QDCFICKKGGHRAKDC 238
+CYNC + GH+A NC + + C+ C H R C + C++C K GH +++C
Sbjct: 79 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 138
>gi|300720186|gb|ADK33096.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V + ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVNHPNIMMQRNNFKGPRRI-------VKCFNCGKEGHIAXNCRAP--RKKGCWKC 413
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 414 GKEGHQMKDCTERQANFLGK 433
>gi|255739565|gb|ACU31720.1| gag protein [Human immunodeficiency virus 1]
Length = 490
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 10/73 (13%)
Query: 158 SDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 367 SSNIMMQRSNFKGPRRIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQM 417
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 418 KDCTERQANFLGK 430
Score = 37.4 bits (85), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G H A A+ + S G R+ K CF C K GH AK+C
Sbjct: 347 CQGVGGPSHKARVLAEAMSHSSNIMMQRSNFKGPRRIVK---CFNCGKEGHIAKNCRAPR 403
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 404 KKG------CWKCGKEGHQMKDC 420
>gi|300720651|gb|ADK33406.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSNVNNANIMMQRSNFKGPRRI-------VKCFNCGKEGHIARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
>gi|242027911|gb|ACS75991.1| gag protein [Human immunodeficiency virus 1]
Length = 349
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 241 EAMSQVNSTNIMMQRNNFKGPRKI-------VKCFNCGKEGHIARNCRAP--RKKGCWKC 291
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 292 GREGHQMKDCTERQANFLGK 311
>gi|209576143|gb|ACI64041.1| gag protein [Human immunodeficiency virus 1]
Length = 107
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 4 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 53
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 54 GKEGHQMKDCTERQANFLGK 73
>gi|50550507|ref|XP_502726.1| YALI0D12056p [Yarrowia lipolytica]
gi|49648594|emb|CAG80914.1| YALI0D12056p [Yarrowia lipolytica CLIB122]
Length = 197
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 69/166 (41%), Gaps = 39/166 (23%)
Query: 178 RGW-QTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCS---KAQDCFICKKGG 232
RG+ +TC+NCGE GH R+ + P C+ CG+ H R C+ K + CF C + G
Sbjct: 9 RGYSRTCFNCGEFGHQV---RACPRVGNPVCYNCGNDGHMSRDCTEEPKEKACFKCNQPG 65
Query: 233 HRAKDCPDK----HKSGFQNAQ------------------VCLKCGDSGHDMFSCRNSYS 270
H K+CP H A VC KCG GH +CR+ +
Sbjct: 66 HILKECPQNDAIVHDGAAPVAPNGEAPIGGEFGAPRGPSGVCYKCGKPGHFARACRSVPA 125
Query: 271 LDDLKEV----QCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHT 312
+ CY C GHL D G+ C+ CG +GH
Sbjct: 126 GGAPPKFGRTQSCYSCGGQGHL----SKDCTVGQ-KCYNCGSMGHV 166
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 42/101 (41%), Gaps = 14/101 (13%)
Query: 173 FDPPDRGWQTCYNCGEEGHMAVNCRSA--------VKRKKPCFVCGSLEHGVRQCSKAQD 224
F P CY CG+ GH A CRS R + C+ CG H + C+ Q
Sbjct: 97 FGAPRGPSGVCYKCGKPGHFARACRSVPAGGAPPKFGRTQSCYSCGGQGHLSKDCTVGQK 156
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
C+ C GH +K+C G ++VC C GH C
Sbjct: 157 CYNCGSMGHVSKEC------GEAQSRVCYNCKKPGHIAIKC 191
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 145 ADNGDEGVTTVEISDNIVLRKLLRGPRYFDPPDRG-WQTCYNCGEEGHMAVNCRSAVKRK 203
A G GV R P PP G Q+CY+CG +GH++ +C K
Sbjct: 99 APRGPSGVCYKCGKPGHFARACRSVPAGGAPPKFGRTQSCYSCGGQGHLSKDCTVGQK-- 156
Query: 204 KPCFVCGSLEHGVRQCSKAQD--CFICKKGGHRAKDC 238
C+ CGS+ H ++C +AQ C+ CKK GH A C
Sbjct: 157 --CYNCGSMGHVSKECGEAQSRVCYNCKKPGHIAIKC 191
>gi|403256355|ref|XP_003920846.1| PREDICTED: zinc finger CCHC domain-containing protein 9 [Saimiri
boliviensis boliviensis]
Length = 272
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C +A++ + C+ CGS EH + +C D CF+
Sbjct: 130 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 189
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
C + GH ++ CPD K + + C CG H C S + D + V
Sbjct: 190 CGEMGHLSRACPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSDRMVTV 239
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C+K GH DCP ++ +C +CG + H++ C+ +L
Sbjct: 121 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 180
Query: 273 DLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+ +C++C GHL C N C CG + H
Sbjct: 181 EFPFAKCFVCGEMGHLSRACPDNPKGLYADGGGCKLCGSVEH 222
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVP 298
K ++ +NA VC C GH + C + D+ CY C H C D
Sbjct: 120 KRQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPAL 179
Query: 299 GEVS---CFRCGQLGH 311
GE CF CG++GH
Sbjct: 180 GEFPFAKCFVCGEMGH 195
>gi|374429773|gb|AEZ51108.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CGS H ++ C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGSEGHQMKDCTERQANFLGK 435
>gi|297798314|ref|XP_002867041.1| hypothetical protein ARALYDRAFT_491032 [Arabidopsis lyrata subsp.
lyrata]
gi|297312877|gb|EFH43300.1| hypothetical protein ARALYDRAFT_491032 [Arabidopsis lyrata subsp.
lyrata]
Length = 257
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 13/96 (13%)
Query: 183 CYNCGEEGHMAVNC---------RSAVKRKKPCFVCGSLEHGVRQCSK----AQDCFICK 229
CYNCG+ GH A +C + C+ CG + H R+C+ ++ C+ C
Sbjct: 160 CYNCGDIGHFARDCGNQKVTAGSVRSGGGSGSCYTCGGVGHIARECATKRQPSRGCYQCG 219
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
GH A+DC + G C CG GH C
Sbjct: 220 GSGHLARDCDQRASGGNGGGNKCYSCGKEGHFAREC 255
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 52/130 (40%), Gaps = 28/130 (21%)
Query: 183 CYNCGEEGHMAVNCR-----------SAVKRKKPCFVCGSLEHGVRQCSKAQ-------- 223
CYNCG+ GH A +C +A K C+ CG + H R C +
Sbjct: 126 CYNCGDAGHFARDCTQKSVGNGDQRGAAGAGKDGCYNCGDIGHFARDCGNQKVTAGSVRS 185
Query: 224 -----DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQ 278
C+ C GH A++C K Q ++ C +CG SGH C S + +
Sbjct: 186 GGGSGSCYTCGGVGHIARECATKR----QPSRGCYQCGGSGHLARDCDQRASGGNGGGNK 241
Query: 279 CYICRCFGHL 288
CY C GH
Sbjct: 242 CYSCGKEGHF 251
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 57/154 (37%), Gaps = 29/154 (18%)
Query: 183 CYNCGEEGHM--AVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ---------------DC 225
CYNCGE GH+ R++ C+ CG H R C++ C
Sbjct: 101 CYNCGELGHIGGGSGGGERGSRREGCYNCGDAGHFARDCTQKSVGNGDQRGAAGAGKDGC 160
Query: 226 FICKKGGHRAKDCPDKHKSG-----FQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCY 280
+ C GH A+DC ++ + + C CG GH C + CY
Sbjct: 161 YNCGDIGHFARDCGNQKVTAGSVRSGGGSGSCYTCGGVGHIAREC----ATKRQPSRGCY 216
Query: 281 ICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
C GHL C S G C+ CG+ GH
Sbjct: 217 QCGGSGHLARDCDQRASGGNGGGNKCYSCGKEGH 250
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK--------AQDCFICKKGGHR 234
CY CG GH+A C + + + C+ CG H R C + C+ C K GH
Sbjct: 192 CYTCGGVGHIARECATKRQPSRGCYQCGGSGHLARDCDQRASGGNGGGNKCYSCGKEGHF 251
Query: 235 AKDCP 239
A++C
Sbjct: 252 ARECS 256
>gi|282598032|gb|ADA83277.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ S ++ R RG R C+NCG+EGH+A NC++ RKK C+ C
Sbjct: 360 EAMSQVQQSSTMMQRGNFRGQRTIK--------CFNCGKEGHLARNCKAP--RKKGCWKC 409
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 410 GKEGHQMKDCTERQANFLGK 429
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + + ++ G + + CF C K GH A++C
Sbjct: 345 CQGVGGPGHKARVLAEAMSQVQQSSTM--MQRGNFRGQRTIKCFNCGKEGHLARNCKAPR 402
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 403 KKG------CWKCGKEGHQMKDC 419
>gi|118426954|gb|ABK91228.1| gag protein [Human immunodeficiency virus 1]
Length = 169
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSKVQNASIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|55979939|gb|AAV69382.1| gag protein [Human immunodeficiency virus 1]
Length = 127
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|270016036|gb|EFA12484.1| hypothetical protein TcasGA2_TC001508 [Tribolium castaneum]
Length = 1171
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAK 236
CY C E GHMA C+ V R K C CG H V+ C K C +C GHRAK
Sbjct: 111 CYRCWEPGHMAARCQ-GVDRSKLCHRCGEEGHSVKTCEKEMFCPVCGVRGHRAK 163
>gi|209576073|gb|ACI64006.1| gag protein [Human immunodeficiency virus 1]
Length = 107
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 4 EAMSQVQNTNIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 53
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 54 GKEGHQMKDCTERQANFLGK 73
>gi|209576139|gb|ACI64039.1| gag protein [Human immunodeficiency virus 1]
Length = 107
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 4 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 53
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 54 GKEGHQMKDCTERQANFLGK 73
>gi|308805915|ref|XP_003080269.1| zinc finger, CCHC domain containing 9 (ISS) [Ostreococcus tauri]
gi|116058729|emb|CAL54436.1| zinc finger, CCHC domain containing 9 (ISS) [Ostreococcus tauri]
Length = 238
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 43/98 (43%), Gaps = 17/98 (17%)
Query: 178 RGWQTCYNCGEEGHMAVNC--RSAVKRKKPCFVCGSLEHGVRQCSKAQD--------CFI 227
RG +TCYNCG H A C + CFVCG H R C K + C I
Sbjct: 78 RGEKTCYNCGSREHTASACAEKWTNYAHAKCFVCGETGHLSRSCGKNANGVYINGGCCKI 137
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
C+ H KDCP K S C++CG+ GH C
Sbjct: 138 CRAKDHLVKDCPHKGDS-------CIRCGERGHFAAQC 168
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 60/150 (40%), Gaps = 32/150 (21%)
Query: 169 GPRYFDPPDRGWQTCYNCGEEGHMAVNCRSA-------VKRKKPCFVCGSLEHGVRQCSK 221
GP R TC+ C GH +CR A V+ +K C+ CGS EH C++
Sbjct: 39 GPSTNGGIWRSKVTCFGCRGVGHTLRDCRVAKGGAAGSVRGEKTCYNCGSREHTASACAE 98
Query: 222 AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYI 281
+ + +A+ C CG++GH SC + + + C I
Sbjct: 99 KW--------------------TNYAHAK-CFVCGETGHLSRSCGKNANGVYINGGCCKI 137
Query: 282 CRCFGHLCCVNISDAVPGEVSCFRCGQLGH 311
CR HL + D SC RCG+ GH
Sbjct: 138 CRAKDHL----VKDCPHKGDSCIRCGERGH 163
>gi|55979902|gb|AAV69366.1| gag protein [Human immunodeficiency virus 1]
Length = 127
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|371559464|gb|AEX36647.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQGANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 415 GKEGHQMKDCTERQANFL 432
>gi|209576085|gb|ACI64012.1| gag protein [Human immunodeficiency virus 1]
Length = 107
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 4 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 53
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 54 GKEGHQMKDCTERQANFLGK 73
>gi|118426796|gb|ABK91149.1| gag protein [Human immunodeficiency virus 1]
Length = 153
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 20 EAMSQVQNTNIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 69
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 70 GKEGHQMKDCTERQANFL 87
>gi|37682590|gb|AAQ98271.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ + + ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 360 EAMSQTQTNSIMMQRSNFKGPRRMV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 410
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 411 GKEGHQMKDCTERQANFLGK 430
>gi|55979912|gb|AAV69370.1| gag protein [Human immunodeficiency virus 1]
Length = 145
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHEMKDCTERQANFLGK 88
>gi|259126517|gb|ACV94229.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTEGQANFLGK 435
>gi|209576069|gb|ACI64004.1| gag protein [Human immunodeficiency virus 1]
gi|209576071|gb|ACI64005.1| gag protein [Human immunodeficiency virus 1]
gi|209576093|gb|ACI64016.1| gag protein [Human immunodeficiency virus 1]
gi|209576101|gb|ACI64020.1| gag protein [Human immunodeficiency virus 1]
gi|209576153|gb|ACI64046.1| gag protein [Human immunodeficiency virus 1]
gi|209576175|gb|ACI64057.1| gag protein [Human immunodeficiency virus 1]
gi|209576197|gb|ACI64068.1| gag protein [Human immunodeficiency virus 1]
Length = 107
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 4 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 53
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 54 GKEGHQMKDCTERQANFLGK 73
>gi|32765868|gb|AAP68999.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 10/71 (14%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H V+
Sbjct: 370 NIMMQKSNFKGPRRTI-------KCFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQVKD 420
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 421 CTERQANFLGK 431
>gi|209576149|gb|ACI64044.1| gag protein [Human immunodeficiency virus 1]
Length = 107
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 4 EAMSQVQGANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 53
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 54 GKEGHQMKDCTERQANFLGK 73
>gi|154304431|ref|XP_001552620.1| hypothetical protein BC1G_09091 [Botryotinia fuckeliana B05.10]
Length = 206
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 65/178 (36%), Gaps = 52/178 (29%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA------------- 222
P RG CYNC GH++ +C K K C+ CG+ H CS
Sbjct: 30 PSRGPPKCYNCDNPGHLSRDCPEGPKEKV-CYRCGTSGHISNDCSNPPTEGAGRGGGYGG 88
Query: 223 ---QDCFICKKGGHRAKDCPD--------------------KHKSGFQNAQVCLKCGDSG 259
Q C+ C K GH A++CP+ Q +Q C CG G
Sbjct: 89 GGGQQCYKCSKIGHIARNCPEAGGYGGNQGYGGNQGGYGGGFGGGARQGSQTCFSCGGYG 148
Query: 260 HDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGHTGL 314
H S D + +CY C GHL C S+A C+ C Q GH L
Sbjct: 149 H--------LSRDCTQGQKCYNCGEVGHLSRDCSQETSEA----RRCYECKQEGHEKL 194
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 28/109 (25%)
Query: 181 QTCYNCGEEGHMAVNCRSAV------------------------KRKKPCFVCGSLEHGV 216
Q CY C + GH+A NC A + + CF CG H
Sbjct: 92 QQCYKCSKIGHIARNCPEAGGYGGNQGYGGNQGGYGGGFGGGARQGSQTCFSCGGYGHLS 151
Query: 217 RQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
R C++ Q C+ C + GH ++DC + A+ C +C GH+ C
Sbjct: 152 RDCTQGQKCYNCGEVGHLSRDCSQE----TSEARRCYECKQEGHEKLDC 196
>gi|118426950|gb|ABK91226.1| gag protein [Human immunodeficiency virus 1]
Length = 151
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 69 GKEGHQMKDCTERQANFL 86
>gi|18699111|gb|AAL78391.1|AF413967_1 gag protein [Human immunodeficiency virus 1]
Length = 219
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 86 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 135
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 136 GKEGHQMKDCTERQANFL 153
>gi|396075578|gb|AFN81286.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ +V R RG R C+NCG+EGH+A NC++ RKK C+ C
Sbjct: 362 EAMSQVQQTNVMVQRGNFRGQRTIK--------CFNCGKEGHLARNCKAP--RKKGCWKC 411
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +R C++ Q F+ +
Sbjct: 412 GKEGHQMRDCTERQANFLGR 431
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + V ++ G + + CF C K GH A++C
Sbjct: 346 ACQGVGGPGHKARVLAEAMSQVQQTNVM--VQRGNFRGQRTIKCFNCGKEGHLARNCKAP 403
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 404 RKKG------CWKCGKEGHQMRDC 421
>gi|242027909|gb|ACS75990.1| gag protein [Human immunodeficiency virus 1]
Length = 327
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 219 EAMSQVNSTNIMMQRNNFKGPRKI-------VKCFNCGKEGHIARNCRAP--RKKGCWKC 269
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 270 GREGHQMKDCTERQANFLGK 289
>gi|259124539|gb|ACV93418.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCGEEGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 390 CFNCGEEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 434
>gi|195954508|gb|ACG58947.1| gag protein [Human immunodeficiency virus 1]
gi|238733932|gb|ACR55196.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNTSIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
>gi|209576135|gb|ACI64037.1| gag protein [Human immunodeficiency virus 1]
Length = 105
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 4 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 53
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 54 GKEGHQMKDCTERQANFLGK 73
>gi|118426790|gb|ABK91146.1| gag protein [Human immunodeficiency virus 1]
Length = 151
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 18 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 67
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 68 GKEGHQMKDCTERQANFL 85
>gi|117581800|gb|ABK41331.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQSTNIMMQRGNFKGPKRVK--------CFNCGKEGHIARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G+ H ++ C++ Q F+ K
Sbjct: 415 GNEGHQMKDCTERQANFLGK 434
Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG+ GH M C
Sbjct: 377 MQRGNFKGPKRVKCFNCGKEGHIARNCRAPRKKG------CWKCGNEGHQMKDC 424
>gi|118369873|ref|XP_001018139.1| Glutathione peroxidase family protein [Tetrahymena thermophila]
gi|89299906|gb|EAR97894.1| Glutathione peroxidase family protein [Tetrahymena thermophila SB210]
Length = 2190
Score = 52.0 bits (123), Expect = 4e-04, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 48/119 (40%), Gaps = 13/119 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
TC+ C GH A C + + + C C +H C+ CF C GHR KDC +
Sbjct: 2055 TCFKCHRNGHTAQLCTNQSEERSKCVFCLG-DHSKDYCTNYV-CFKCYLVGHRIKDCAFE 2112
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC--------RNSYSLDDLKEVQCYICRCFGHLCCVN 292
++C K GH + C + SY + E C CR GH+ C N
Sbjct: 2113 QSMDQSRCRICRK---KGHTLKQCGSLNLDIVQKSYDFYSMNETICLNCREPGHINCFN 2168
>gi|302757968|ref|XP_002962407.1| hypothetical protein SELMODRAFT_438147 [Selaginella moellendorffii]
gi|300169268|gb|EFJ35870.1| hypothetical protein SELMODRAFT_438147 [Selaginella moellendorffii]
Length = 1326
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 24/154 (15%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKR--KKPCFVCGSLEHGVRQCSKAQDCFICKKGGHR 234
+R ++C+NCG+ GH++ C +R + P + S + R+ + + C+ C + GH+
Sbjct: 252 ERDRRSCFNCGKVGHLSAQCPLKTERGERSPKRLRPSEDD--RKRGRGKQCYNCGEEGHK 309
Query: 235 AKDCPDKHKSGFQNAQ---------VCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCF 285
++ CP K N + C C +SGH +F C +S D + R
Sbjct: 310 SRVCPRKVSVSVTNKEDGGRRADEKRCFNCHESGHLLFEC-PMFSDGDAPRNES--ARSV 366
Query: 286 GHLCCV----NISDAVPGEV----SCFRCGQLGH 311
G CV ++DA + CF CG+ GH
Sbjct: 367 GDNACVLYKTKLTDAEKNQYLRQNKCFTCGKSGH 400
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 49/136 (36%), Gaps = 42/136 (30%)
Query: 168 RGPRYFDPPD------RGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK 221
R P+ P + RG Q CYNCGEEGH + C RK V + G R K
Sbjct: 280 RSPKRLRPSEDDRKRGRGKQ-CYNCGEEGHKSRVC----PRKVSVSVTNKEDGGRRADEK 334
Query: 222 AQDCFICKKGGHRAKDCP-----------------------------DKHKSGFQNAQVC 252
CF C + GH +CP D K+ + C
Sbjct: 335 R--CFNCHESGHLLFECPMFSDGDAPRNESARSVGDNACVLYKTKLTDAEKNQYLRQNKC 392
Query: 253 LKCGDSGHDMFSCRNS 268
CG SGH +SC S
Sbjct: 393 FTCGKSGHPYYSCPQS 408
>gi|213138034|gb|ACJ44692.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 10/73 (13%)
Query: 158 SDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SPNIMMQKSNFKGPRRTI-------KCFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
>gi|118426858|gb|ABK91180.1| gag protein [Human immunodeficiency virus 1]
Length = 125
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQHANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|18699108|gb|AAL78389.1|AF413966_1 gag protein [Human immunodeficiency virus 1]
Length = 219
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 86 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 135
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 136 GKEGHQMKDCTERQANFL 153
>gi|378407273|gb|AFB83149.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 345
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 10/73 (13%)
Query: 158 SDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
+ NI+++K RGPR P + C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 221 NSNIMMQKSNFRGPRR---PVK----CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQM 271
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 272 KDCTERQANFLGK 284
>gi|357168159|ref|XP_003581512.1| PREDICTED: uncharacterized protein LOC100826202 [Brachypodium
distachyon]
Length = 422
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 24/128 (18%)
Query: 206 CFVCGSLEHGVRQCS------KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
CF+C S +H + C K + C +C++ GH K+CP+K + + C CG SG
Sbjct: 73 CFICKSTDHVAKTCPEKSLWDKNKICLLCRERGHSLKNCPEKSDGDLK--KFCYNCGGSG 130
Query: 260 HDMFSCRNS---------YSLDDL----KEVQCYICRCFGHL---CCVNISDAVPGEVSC 303
H + C + L D C++C+ GHL C N P C
Sbjct: 131 HSLSKCPKPIENGTLHPHFLLIDFAGGTNFASCFVCKQQGHLSKDCPENKHGIYPKGGCC 190
Query: 304 FRCGQLGH 311
CG++ H
Sbjct: 191 KVCGEVTH 198
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKK--PCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
CYNCG GH C ++ P F+ G S CF+CK+ GH +KDCP+
Sbjct: 123 CYNCGGSGHSLSKCPKPIENGTLHPHFLLIDFAGGTNFAS----CFVCKQQGHLSKDCPE 178
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNS------YSLDD 273
+ C CG+ H C N YS DD
Sbjct: 179 NKHGIYPKGGCCKVCGEVTHLARHCPNKRQQDFMYSRDD 217
>gi|242027903|gb|ACS75987.1| gag protein [Human immunodeficiency virus 1]
gi|242027905|gb|ACS75988.1| gag protein [Human immunodeficiency virus 1]
gi|242027907|gb|ACS75989.1| gag protein [Human immunodeficiency virus 1]
gi|242027913|gb|ACS75992.1| gag protein [Human immunodeficiency virus 1]
gi|242027915|gb|ACS75993.1| gag protein [Human immunodeficiency virus 1]
gi|242027917|gb|ACS75994.1| gag protein [Human immunodeficiency virus 1]
gi|242027919|gb|ACS75995.1| gag protein [Human immunodeficiency virus 1]
Length = 327
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 219 EAMSQVNSTNIMMQRNNFKGPRKI-------VKCFNCGKEGHIARNCRAP--RKKGCWKC 269
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 270 GREGHQMKDCTERQANFLGK 289
>gi|55560855|gb|AAV53292.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V S I+++K RG R C+NCGEEGH+A NCR+ RK+ C+
Sbjct: 365 EAMSQVTNSPTIMMQKGNFRGQRKIK--------CFNCGEEGHLAKNCRAP--RKRGCWK 414
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 415 CGKEGHQMKDCTERQANFLGK 435
>gi|225056162|gb|ACN80886.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 10/81 (12%)
Query: 150 EGVTTVEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V S ++++K RGP+ C+NCG+EGH+A NCR+ RKK C+
Sbjct: 364 EAMSQVTNSATVMMQKSNFRGPKRTV-------KCFNCGKEGHIAKNCRAP--RKKGCWK 414
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H +++C++ Q F+ K
Sbjct: 415 CGKEGHRMKECTERQANFLGK 435
>gi|209576081|gb|ACI64010.1| gag protein [Human immunodeficiency virus 1]
Length = 107
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 4 EAMSQVQNANVMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 53
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 54 GKEGHQMKDCTERQANFLGK 73
>gi|118426936|gb|ABK91219.1| gag protein [Human immunodeficiency virus 1]
Length = 168
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 69 GKEGHQMKDCTERQANFL 86
>gi|255986740|gb|ACU50752.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +R C++ Q F+ K
Sbjct: 392 CFNCGKEGHIAXNCRAP--RKKGCWKCGKEGHQMRDCTERQANFLGK 436
>gi|255739237|gb|ACU31556.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ D ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQANKVDXMMQRSNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
>gi|225056285|gb|ACN80944.1| gag protein [Human immunodeficiency virus 1]
Length = 466
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG EGH+A NCR+ RKK C+ CG EH ++ C++ Q F+ K
Sbjct: 400 CFNCGREGHIAKNCRAP--RKKGCWKCGKEEHQMKDCTERQANFLGK 444
>gi|33088442|gb|AAP93263.1| gag protein [Human immunodeficiency virus 1]
Length = 157
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 24 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 73
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 74 GKEGHQMKDCTERQANFL 91
>gi|238734095|gb|ACR55340.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+A RKK C+ CG H ++ C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAA--RKKGCWKCGKEGHQMKDCTERQANFLGK 435
>gi|209576155|gb|ACI64047.1| gag protein [Human immunodeficiency virus 1]
Length = 107
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 4 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 53
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 54 GKEGHQMKDCTERQANFLGK 73
>gi|118426856|gb|ABK91179.1| gag protein [Human immunodeficiency virus 1]
Length = 172
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSHVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 69 GKEGHQMKDCTERQANFL 86
>gi|407038564|gb|EKE39189.1| zinc knuckle domain containing protein [Entamoeba nuttalli P19]
Length = 400
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 203 KKPCFVCGSLEHGVRQCSKAQD--CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
+K CF CG H R CS+ D CF C K GH K+CP++ + C KCG GH
Sbjct: 309 QKVCFKCGKPGHIGRDCSQPDDKVCFYCGKPGHIGKNCPEQEVPESSDQATCYKCGQVGH 368
Query: 261 DMFSC 265
C
Sbjct: 369 KSMDC 373
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ--------DCFICKKGG 232
+ C+ CG+ GH+ +C K CF CG H + C + + C+ C + G
Sbjct: 310 KVCFKCGKPGHIGRDCSQP--DDKVCFYCGKPGHIGKNCPEQEVPESSDQATCYKCGQVG 367
Query: 233 HRAKDCPDKHKSGFQ 247
H++ DCP+ + GF+
Sbjct: 368 HKSMDCPENTEGGFK 382
Score = 37.4 bits (85), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 229 KKGGHRAKDCPDKHKSGFQNA--QVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFG 286
KK G++ D S + +VC KCG GH C DD C+ C G
Sbjct: 287 KKKGYKYGDTSAPETSSLNKSLQKVCFKCGKPGHIGRDCSQP---DDK---VCFYCGKPG 340
Query: 287 HLCCVNISDAVP---GEVSCFRCGQLGHTGL 314
H+ VP + +C++CGQ+GH +
Sbjct: 341 HIGKNCPEQEVPESSDQATCYKCGQVGHKSM 371
>gi|226345310|gb|ACO49151.1| gag protein [Human immunodeficiency virus 1]
Length = 130
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 2 EAMSQVNNTNVMMQRNNFKGPRRTI-------KCFNCGKEGHLARNCRAP--RKKGCWKC 52
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 53 GKEGHQMKDCTERQANFLGK 72
>gi|209576173|gb|ACI64056.1| gag protein [Human immunodeficiency virus 1]
Length = 107
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 4 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 53
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 54 GKEGHQMKDCTEKQANFL 71
>gi|164606174|gb|ABY62236.1| gag protein [Human immunodeficiency virus 1]
gi|283444833|gb|ADB20307.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R ++GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQVTNTNIMMQRGNIKGPRRIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
>gi|33088374|gb|AAP93229.1| gag protein [Human immunodeficiency virus 1]
Length = 154
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ S+ ++ + RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 24 EAMSQVQQSNVMMQKGNFRGQRTIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 73
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ CS+ Q F+ K
Sbjct: 74 GKEGHQMKDCSERQANFLGK 93
>gi|410585726|gb|AFV74144.1| gag protein [Human immunodeficiency virus]
Length = 490
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQQTNVMMQRSNFKGPKRIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKC 415
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 416 GQEGHQMKDCTERQANFLGK 435
>gi|386307163|gb|AFJ05561.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 491
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 10/71 (14%)
Query: 160 NIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI++ R L+GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NILMQRSNLKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 422 CTERQANFLGK 432
>gi|348503938|ref|XP_003439519.1| PREDICTED: zinc finger CCHC domain-containing protein 9-like
[Oreochromis niloticus]
Length = 275
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 14/97 (14%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFIC 228
C+NC + GH +C A + ++ CF CGS EH + +C D CFIC
Sbjct: 136 CFNCRKPGHGLADCPEADRDEEMGRGICFRCGSTEHEIYKCKAKVDPALGDYPYAKCFIC 195
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ GH ++ CPD K + C CG H C
Sbjct: 196 GQTGHLSRSCPDNPKGLYAQGGCCHVCGSVEHFQKDC 232
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLDDLKEVQCYIC 282
CF C+K GH DCP+ + +C +CG + H+++ C+ +L D +C+IC
Sbjct: 136 CFNCRKPGHGLADCPEADRDEEMGRGICFRCGSTEHEIYKCKAKVDPALGDYPYAKCFIC 195
Query: 283 RCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
GHL C N C CG + H
Sbjct: 196 GQTGHLSRSCPDNPKGLYAQGGCCHVCGSVEH 227
>gi|255739481|gb|ACU31678.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 10/73 (13%)
Query: 158 SDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SANILMQRSNFKGPRRIV-------KCFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
>gi|226345304|gb|ACO49148.1| gag protein [Human immunodeficiency virus 1]
Length = 132
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E +++ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 2 EAMSSANQTNIMMQRNNFKGPRRII-------KCFNCGKEGHIAXNCRAP--RKKGCWKC 52
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 53 GKEGHQMKDCTERQANFLGK 72
>gi|209576171|gb|ACI64055.1| gag protein [Human immunodeficiency virus 1]
Length = 107
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 4 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 53
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 54 GKEGHQMKDCTERQANFLGK 73
>gi|164606182|gb|ABY62240.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R ++GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQVTNTNIMMQRGNIKGPRRIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
>gi|164606176|gb|ABY62237.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R ++GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQVTNTNIMMQRGNIKGPRRIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
>gi|425768609|gb|EKV07127.1| Zinc knuckle transcription factor (CnjB), putative [Penicillium
digitatum PHI26]
gi|425776034|gb|EKV14272.1| Zinc knuckle transcription factor (CnjB), putative [Penicillium
digitatum Pd1]
Length = 414
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 46/108 (42%), Gaps = 11/108 (10%)
Query: 169 GPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----D 224
G RY + G YN G+EGH C + ++ CF CG H +C +
Sbjct: 19 GGRYGENAGGGNSAYYNRGQEGHSKTEC-TVPRKMGACFNCGQEGHSKAECPNLRVFKGT 77
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
C IC+K GH A DCP++ VC C GH C+ + D
Sbjct: 78 CRICEKEGHPAVDCPER------PPDVCKNCQAQGHKTMECKENRKFD 119
>gi|326654062|gb|AEA02921.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ + ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 361 EAMSQTQNTNIMMQRNNFKGPRRII-------KCFNCGKEGHLARNCRAP--RKKGCWKC 411
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 412 GKEGHQMKDCTERQANFLGK 431
>gi|164606178|gb|ABY62238.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R ++GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQVTNTNIMMQRGNIKGPRRIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
>gi|73913902|gb|AAZ91872.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQANSTNVLIQRSNFKGPRRIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
>gi|260533763|gb|ACX45159.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CGS H ++ C++ Q F+ K
Sbjct: 387 CFNCGKEGHLARNCRAP--RKKGCWKCGSEGHQMKDCTERQANFLGK 431
>gi|226345386|gb|ACO49189.1| gag protein [Human immunodeficiency virus 1]
Length = 130
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V S ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 2 EAMSQVNNSKVMMQRSNFKGPRRIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 52
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 53 GKEGHQMKDCTERQANFLGK 72
>gi|226345350|gb|ACO49171.1| gag protein [Human immunodeficiency virus 1]
Length = 131
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 2 EAMSQTNMTSVLMQRSNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 51
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 52 GKEGHQMKDCTERQANFLGK 71
>gi|195954510|gb|ACG58948.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNASIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
>gi|259128714|gb|ACV95064.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 424
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R RG + C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 292 EAMSQVQHTNIMMQRGNFRGQKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 341
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +R C++ Q F+ K
Sbjct: 342 GKEGHQMRDCTERQANFLGK 361
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 277 CQGVGGPGHKARVLAEAMSQVQHTNIM--MQRGNFRGQKRIKCFNCGKEGHLARNCRAPR 334
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 335 KKG------CWKCGKEGHQMRDC 351
>gi|259125659|gb|ACV93873.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHPNIMMQKGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLRK 434
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + + P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQHPNIM---MQKGNFRGPKRIKCFNCGKEGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKDC 424
>gi|209576187|gb|ACI64063.1| gag protein [Human immunodeficiency virus 1]
Length = 107
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 4 EAMSQVQNANIMMQKSNFRGPKRLK--------CFNCGKEGHIARNCRAP--RKKGCWKC 53
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 54 GKEGHQMKDCTERQANFLGK 73
>gi|194399868|gb|ACF60846.1| gag protein [Human immunodeficiency virus 1]
Length = 487
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 10/73 (13%)
Query: 158 SDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
+ NI+ +K +GPR C+NCG EGH+A NCR+ RKK C+ CG H +
Sbjct: 364 NPNIMFQKNNFKGPRRI-------VKCFNCGREGHIAKNCRAP--RKKGCWKCGKEGHQM 414
Query: 217 RQCSKAQDCFICK 229
++CS+ Q F+ K
Sbjct: 415 KECSERQANFLGK 427
>gi|406606389|emb|CCH42163.1| Gag-Pol polyprotein [Wickerhamomyces ciferrii]
Length = 180
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 64/148 (43%), Gaps = 26/148 (17%)
Query: 183 CYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKDC 238
CYNC GH A +C + +K C+ CG + H C+ K C+ C + GH +K+C
Sbjct: 29 CYNCSNPGHQANDCPEPRQDTQKQCYGCGGVGHVQSNCTEQAKGTRCYNCSQFGHISKEC 88
Query: 239 PDKHKSGFQN-----------AQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCF-G 286
P+ + Q A C KCG H C+ V+CY C G
Sbjct: 89 PEPQQERPQRSFNQRPRSNNKATTCYKCGGPNHFARDCQAGV-------VKCYACGSQDG 141
Query: 287 HLC--CVNISDAVPGEV-SCFRCGQLGH 311
HL C + S V +C++CG +GH
Sbjct: 142 HLAKDCTSASGGVNTSTKTCYKCGDVGH 169
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 44/101 (43%), Gaps = 17/101 (16%)
Query: 183 CYNCGEEGHMAVNC---------RSAVKRKKP------CFVCGSLEHGVRQC-SKAQDCF 226
CYNC + GH++ C RS +R + C+ CG H R C + C+
Sbjct: 75 CYNCSQFGHISKECPEPQQERPQRSFNQRPRSNNKATTCYKCGGPNHFARDCQAGVVKCY 134
Query: 227 IC-KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
C + GH AKDC + + C KCGD GH CR
Sbjct: 135 ACGSQDGHLAKDCTSASGGVNTSTKTCYKCGDVGHISRDCR 175
>gi|326417125|gb|ADZ73404.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCF---ICKKGGHRAKDCP 239
C+NCG+EGH+A NCR+ RKK C+ CG H ++ CS+ Q F IC+ R + P
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCSERQGNFLGKICRSNKGRPGNFP 447
Query: 240 D 240
Sbjct: 448 Q 448
>gi|119361974|gb|ABL66945.1| gag protein [Human immunodeficiency virus 1]
Length = 474
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 341 EAMSHVQHANVMMQRGNFKGPKRIK--------CFNCGKEGHIAKNCRAP--RKKGCWKC 390
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 391 GKEGHQMKDCTERQANFLGK 410
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + V ++ G + K CF C K GH AK+C
Sbjct: 325 ACQGVGGPGHKARVLAEAMSHVQHANVM--MQRGNFKGPKRIKCFNCGKEGHIAKNCRAP 382
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 383 RKKG------CWKCGKEGHQMKDC 400
>gi|118426870|gb|ABK91186.1| gag protein [Human immunodeficiency virus 1]
Length = 172
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNASIMMQKSNFRGPKRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|195954541|gb|ACG58963.1| gag protein [Human immunodeficiency virus 1]
gi|238734313|gb|ACR55532.1| gag protein [Human immunodeficiency virus 1]
Length = 489
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 11/69 (15%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K RGP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKSNFRGPKRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFI 227
C++ Q F+
Sbjct: 424 CTERQANFL 432
Score = 37.4 bits (85), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLAKNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|118426934|gb|ABK91218.1| gag protein [Human immunodeficiency virus 1]
Length = 146
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNASIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|4126714|dbj|BAA36710.1| DEAD-Box Protein [Ciona intestinalis]
Length = 669
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 24/99 (24%)
Query: 183 CYNCGEEGHMAVNCRSAV----------KRKKPCFVCGSLEHGVRQC------------- 219
C+ CGEEGHM+ C R K CF CG H R+C
Sbjct: 53 CFKCGEEGHMSRECPQNTGSGFGDSRGGARSKGCFKCGEEGHMSRECPQNTGSGFGDSRG 112
Query: 220 -SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGD 257
++++ CF C + GH +++CP SG +++ K GD
Sbjct: 113 GARSKGCFKCGEEGHMSRECPQNTGSGDRHSNAYFKGGD 151
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 20/79 (25%)
Query: 202 RKKPCFVCGSLEHGVRQC--------------SKAQDCFICKKGGHRAKDCPDKHKSGFQ 247
R K CF CG H R+C ++++ CF C + GH +++CP SGF
Sbjct: 49 RSKGCFKCGEEGHMSRECPQNTGSGFGDSRGGARSKGCFKCGEEGHMSRECPQNTGSGFG 108
Query: 248 NAQ------VCLKCGDSGH 260
+++ C KCG+ GH
Sbjct: 109 DSRGGARSKGCFKCGEEGH 127
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 30/104 (28%)
Query: 217 RQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQ------VCLKCGDSGHDMFSC-RNSY 269
R ++++ CF C + GH +++CP SGF +++ C KCG+ GH C +N+
Sbjct: 45 RGGARSKGCFKCGEEGHMSRECPQNTGSGFGDSRGGARSKGCFKCGEEGHMSRECPQNTG 104
Query: 270 SLDDLKEVQCYICRCFGHLCCVNISDAVPGEVS--CFRCGQLGH 311
S D+ G S CF+CG+ GH
Sbjct: 105 S---------------------GFGDSRGGARSKGCFKCGEEGH 127
>gi|259127104|gb|ACV94423.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVHQTNIMMQRGNFRGQRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + ++ G + + CF C K GH AK+C
Sbjct: 350 CQGVGGPGHKARVLAEAMSHVHQTNIM--MQRGNFRGQRRIKCFNCGKEGHLAKNCRAPR 407
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 KKG------CWKCGKEGHQMKEC 424
>gi|255739307|gb|ACU31591.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 158 SDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVR 217
S+ +V R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 369 SNILVQRSNFKGPRRIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMK 419
Query: 218 QCSKAQDCFICK 229
C++ Q F+ K
Sbjct: 420 DCTERQANFLGK 431
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + V S G R+ K CF C K GH AK+C
Sbjct: 346 ACQGVGGPGHKARVLAEAMSQANSNILVQRSNFKGPRRIVK---CFNCGKEGHIAKNCRA 402
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 403 PRKKG------CWKCGKEGHQMKDC 421
>gi|238733941|gb|ACR55204.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNASIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
>gi|259127100|gb|ACV94421.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVHQTNIMMQRGNFRGQRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 37.7 bits (86), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + ++ G + + CF C K GH AK+C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSHVHQTNIM--MQRGNFRGQRRIKCFNCGKEGHLAKNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|259127091|gb|ACV94417.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVHQTNIMMQRGNFRGQRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + ++ G + + CF C K GH AK+C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSHVHQTNIM--MQRGNFRGQRRIKCFNCGKEGHLAKNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|4324846|gb|AAD17110.1| gag polyprotein [Human immunodeficiency virus 1]
Length = 494
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 9/69 (13%)
Query: 161 IVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS 220
++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++ CS
Sbjct: 374 MMQRGNFKGPRKIP-------KCFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKDCS 424
Query: 221 KAQDCFICK 229
+ Q F+ K
Sbjct: 425 EGQANFLGK 433
>gi|320410169|gb|ADW26872.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V S NI+++ RG F P R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVTNSANIMMQ---RG--NFRP-QRKXVKCFNCGKEGHIAKNCRAP--RKKGCWKC 416
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 417 GKEGHQMKXCTERQANFLGK 436
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH AK+C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSANIMMQRGNFRPQRKXVKCFNCGKEGHIAKNCRAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 KKG------CWKCGKEGHQMKXC 426
>gi|259127112|gb|ACV94426.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVHQTNIMMQRGNFRGQRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + ++ G + + CF C K GH AK+C
Sbjct: 350 CQGVGGPGHKARVLAEAMSHVHQTNIM--MQRGNFRGQRRIKCFNCGKEGHLAKNCRAPR 407
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 KKG------CWKCGKEGHQMKEC 424
>gi|255986550|gb|ACU50658.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG++GH+A NCR+ RKK C+ CG H +++CS+ Q F+ K
Sbjct: 391 CFNCGKQGHIAXNCRAP--RKKGCWKCGKEGHQMKECSEXQANFLGK 435
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + +P + ++ G R K CF C K GH A +C
Sbjct: 350 CQGVGGPXHKARILAEAMSQVQPTTIM--MQRGNFRNQGKXVKCFNCGKQGHIAXNCRAP 407
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 RKKG------CWKCGKEGHQMKEC 425
>gi|6815764|gb|AAF28714.1|AF184582_1 gag protein [Human immunodeficiency virus 1]
Length = 247
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 177 EAMSQVNHTNIMMQRSNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKC 227
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 228 GKEGHQMKDCTEKQANFLGK 247
>gi|374350331|gb|AEZ35846.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 483
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++TV+ + ++ R +G R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 361 EAMSTVQQTKIMMQRGNFKGQRRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 410
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 411 GKEGHQMKDCTERQANFLGK 430
>gi|259127110|gb|ACV94425.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVHQTNIMMQRGNFRGQRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 37.7 bits (86), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + ++ G + + CF C K GH AK+C
Sbjct: 350 CQGVGGPGHKARVLAEAMSHVHQTNIM--MQRGNFRGQRRIKCFNCGKEGHLAKNCRAPR 407
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 KKG------CWKCGKEGHQMKEC 424
>gi|212534810|ref|XP_002147561.1| zinc knuckle transcription factor (CnjB), putative [Talaromyces
marneffei ATCC 18224]
gi|210069960|gb|EEA24050.1| zinc knuckle transcription factor (CnjB), putative [Talaromyces
marneffei ATCC 18224]
Length = 459
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 68/172 (39%), Gaps = 45/172 (26%)
Query: 177 DRGWQTCYNCGEEGHMAVNC---RSAVKR--------------------------KKPCF 207
DR C NCGE GH+A +C R+ ++R K C
Sbjct: 258 DRLIPKCVNCGELGHIAKSCKQERTMIERVEIKCVNCSEVGHRARDCTKQREQRDKFACR 317
Query: 208 VCGSLEHGVRQCSKAQ-----DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDM 262
CGS +H C++ +C C + GH AKDCP+ K A+ C KCG H
Sbjct: 318 NCGSPDHKAVDCTEPPNLDHIECRRCNQNGHFAKDCPNAPKF----ARACRKCGAEDHLS 373
Query: 263 FSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVPGEVSCFRCGQLGHT 312
C ++D + C C GH C D V C CG++GHT
Sbjct: 374 RDCGQQQNMD---LITCNNCDETGHYARDCPKPRDW--SRVKCSNCGEMGHT 420
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFIC 228
+PP+ C C + GH A +C +A K + C CG+ +H R C + Q+ C C
Sbjct: 331 EPPNLDHIECRRCNQNGHFAKDCPNAPKFARACRKCGAEDHLSRDCGQQQNMDLITCNNC 390
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
+ GH A+DCP K + C CG+ GH
Sbjct: 391 DETGHYARDCP---KPRDWSRVKCSNCGEMGH 419
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK--AQDCFICKKG 231
+P G C+NCGEEGH V+C + C VC H +C + A C C+
Sbjct: 61 EPRQGGSGACFNCGEEGHNKVDCPHPRVFQGTCRVCNEEGHPASECPQKPADICKNCRGE 120
Query: 232 GHRAKDCPDKHKSGF--------QNAQVCLKCGDSGHDMFSCRNSYSL 271
GH+ +C + K Q+A LK D+ D+ R+S+ +
Sbjct: 121 GHKTSECNENRKFDLNDVADETPQDAWAKLKKADTERDLDDFRDSFQV 168
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 36/95 (37%), Gaps = 11/95 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKD 237
C NCG GH A C + CF CG H C + C +C + GH A +
Sbjct: 46 CRNCGHSGHFARECPEPRQGGSGACFNCGEEGHNKVDCPHPRVFQGTCRVCNEEGHPASE 105
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
CP K A +C C GH C + D
Sbjct: 106 CPQK------PADICKNCRGEGHKTSECNENRKFD 134
>gi|189214163|gb|ACD84936.1| gag protein [Human immunodeficiency virus 1]
Length = 200
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 85 EAMSQVQQASIMMQKGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 134
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 135 GKEGHQMKDCTERQANFLGK 154
>gi|326417102|gb|ADZ73393.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
CYNCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 387 CYNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 431
>gi|326500674|dbj|BAJ95003.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 306
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 68/170 (40%), Gaps = 28/170 (16%)
Query: 162 VLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK 221
++ K R P + TC NC GH A C S K C+ C H +C
Sbjct: 108 IICKNCRRPGHIARDCPSASTCNNCNLPGHFAAECTS----KTVCWNCKKSGHIATECKN 163
Query: 222 AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQ--- 278
C C K GH A+DCP SG NA++C C GH C N + ++ ++
Sbjct: 164 EALCHTCSKTGHMARDCP---ASG-SNAKLCNNCFKPGHIAVDCTNDRACNNCRQPGHIA 219
Query: 279 --------CYICRCFGHLC-----CVNISDAVPG----EVSCFRCGQLGH 311
C +C GHL ++ + G ++SC CGQ GH
Sbjct: 220 RECKNDPVCNLCNVSGHLARSCPKTTTLASEIHGGPFRDISCRICGQPGH 269
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 19/135 (14%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C+ C + GHMA +C ++ K C C H C+ + C C++ GH A++C
Sbjct: 167 CHTCSKTGHMARDCPASGSNAKLCNNCFKPGHIAVDCTNDRACNNCRQPGHIAREC---- 222
Query: 243 KSGFQNAQVCLKCGDSGHDMFSCRNSYSLDD------LKEVQCYICRCFGHLCCVNISDA 296
+N VC C SGH SC + +L +++ C IC GH IS
Sbjct: 223 ----KNDPVCNLCNVSGHLARSCPKTTTLASEIHGGPFRDISCRICGQPGH-----ISRN 273
Query: 297 VPGEVSCFRCGQLGH 311
V C CG GH
Sbjct: 274 CMVTVICDTCGGRGH 288
>gi|255739423|gb|ACU31649.1| gag protein [Human immunodeficiency virus 1]
Length = 504
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 10/71 (14%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+L+K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMLQKNNFKGPRRII-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 422 CTERQANFLGK 432
>gi|209576199|gb|ACI64069.1| gag protein [Human immunodeficiency virus 1]
Length = 107
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 4 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 53
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 54 GKEGHQMKDCTERQANFLGK 73
>gi|85700504|gb|ABC74622.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCGEEGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 388 CFNCGEEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 432
>gi|326417086|gb|ADZ73386.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +R C++ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMRDCTERQANFLGK 434
>gi|259127098|gb|ACV94420.1| gag protein [Human immunodeficiency virus 1]
gi|259127124|gb|ACV94429.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVHQTNIMMQRGNFRGQRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + ++ G + + CF C K GH AK+C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSHVHQTNIM--MQRGNFRGQRRIKCFNCGKEGHLAKNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|255739425|gb|ACU31650.1| gag protein [Human immunodeficiency virus 1]
Length = 504
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 10/71 (14%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+L+K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMLQKNNFKGPRRII-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 422 CTERQANFLGK 432
>gi|300720699|gb|ADK33438.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 10/73 (13%)
Query: 158 SDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI+++K RGP+ C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SINIMMQKSNFRGPKRTX-------KCFNCGKEGHLARNCRAP--RKKGCWKCGKEGHHM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
>gi|383506271|gb|AFH37794.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++CS+ Q F+ K
Sbjct: 392 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKECSERQANFLGK 436
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 216 VRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
R K CF C K GH AK+C K G C KCG GH M C
Sbjct: 383 FRNQRKIVKCFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKEC 426
>gi|383506239|gb|AFH37778.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V S NI+++ RG F P R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVTNSANIMMQ---RG--NFRP-QRKSVKCFNCGKEGHIAKNCRAP--RKKGCWKC 416
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 417 GKEGHQMKXCTERQANFLGK 436
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K+ CF C K GH AK+C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSANIMMQRGNFRPQRKSVKCFNCGKEGHIAKNCRAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 KKG------CWKCGKEGHQMKXC 426
>gi|300720819|gb|ADK33518.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++CS+ Q F+ K
Sbjct: 389 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKECSERQANFLGK 433
>gi|412986462|emb|CCO14888.1| predicted protein [Bathycoccus prasinos]
Length = 206
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 45/142 (31%)
Query: 183 CYNCGEEGHMAVNCR-------SAVKRKKPCFVCGSLEHGVRQCSKAQD------CFICK 229
C+ C GH +CR ++ + +K C+ CGS EH +R C++ CF+C
Sbjct: 59 CFGCRRTGHSLRDCRYHNGGDANSSRGQKICYNCGSSEHALRDCTEPNSNFAFAKCFVCD 118
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC 289
K GH +++CP+ +KSG + QC IC+ HL
Sbjct: 119 KVGHLSRNCPE-NKSGLY--------------------------VNGGQCRICKGVDHL- 150
Query: 290 CVNISDAVPGEVSCFRCGQLGH 311
+ P + +C RCG+ GH
Sbjct: 151 ----ARDCPKQGACLRCGEEGH 168
>gi|118426844|gb|ABK91173.1| gag protein [Human immunodeficiency virus 1]
Length = 140
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 69 GKEGHQMKDCTERQANFL 86
>gi|55979900|gb|AAV69365.1| gag protein [Human immunodeficiency virus 1]
Length = 123
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|320410284|gb|ADW26911.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++CS+ Q F+ K
Sbjct: 392 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKECSERQANFLGK 436
Score = 37.7 bits (86), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 216 VRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
R K CF C K GH AK+C K G C KCG GH M C
Sbjct: 383 FRNQRKIVKCFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKEC 426
>gi|317138215|ref|XP_001816756.2| zinc knuckle transcription factor (CnjB) [Aspergillus oryzae RIB40]
Length = 484
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKDC 238
C NCG +GH A NC ++ CF CG H +C+K + C +C + GH A C
Sbjct: 58 CRNCGSDGHFARNCPEP-RKGMACFNCGEEGHSKAECTKPRVFKGTCRVCNQEGHPASQC 116
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
P++ VC C GH C+ + D
Sbjct: 117 PERP------PDVCKNCKMEGHRTIDCKENRKFD 144
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 52/132 (39%), Gaps = 13/132 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C NC GH A +C + + C CGS EH +C + + GH AKDCP
Sbjct: 305 CVNCSAVGHRARDCTEPRRDRFACRNCGSSEHKAAECPNPRSAEGVEF-GHFAKDCPQAP 363
Query: 243 KSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVPGE 300
+ C CG H C D+ V C C GH C D +
Sbjct: 364 AP-----RTCRNCGSEDHIARDCDKPR---DISTVTCRNCDEVGHFSRDCPKKKDW--SK 413
Query: 301 VSCFRCGQLGHT 312
V C CG++GHT
Sbjct: 414 VKCNNCGEMGHT 425
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--CFICKKGG 232
P R C+NCGEEGH C K C VC H QC + C CK G
Sbjct: 72 PEPRKGMACFNCGEEGHSKAECTKPRVFKGTCRVCNQEGHPASQCPERPPDVCKNCKMEG 131
Query: 233 HRAKDCPDKHKSGFQN 248
HR DC + K N
Sbjct: 132 HRTIDCKENRKFDLNN 147
>gi|242027901|gb|ACS75986.1| gag protein [Human immunodeficiency virus 1]
Length = 453
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 10/73 (13%)
Query: 158 SDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 352 SPNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKCGREGHQM 402
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 403 KDCTERQANFLGK 415
>gi|255986310|gb|ACU50538.1| gag protein [Human immunodeficiency virus 1]
Length = 351
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGHMA NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 244 CFNCGKEGHMAKNCRAP--RKKGCWKCGKEGHQMKDCTEXQANFLGK 288
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH AK+C
Sbjct: 202 CQGVGGPGHKARVLAEAMSQMTNPAXXMMQRGNFRNQRKVFKCFNCGKEGHMAKNCRAPR 261
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 262 KKG------CWKCGKEGHQMKDC 278
>gi|226345388|gb|ACO49190.1| gag protein [Human immunodeficiency virus 1]
Length = 132
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V S+ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 2 EAMSQVNHSNIMMQRNNFKGPKRII-------KCFNCGKEGHIAKNCRAP--RKKGCWKC 52
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 53 GKEGHQMKDCTERQANFLGK 72
>gi|166025780|gb|ABY78200.1| gag protein [Human immunodeficiency virus 1]
Length = 504
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 394 CFNCGKEGHIARNCRAP--RKKGCWKCGKXGHQMKECTERQANFLGK 438
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + + R K CF C K GH A++C
Sbjct: 352 CQGVGGPGHKARVLAEAMSQVTSSATIMMQKXNFRNQRKTVKCFNCGKEGHIARNCRAPR 411
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 412 KKG------CWKCGKXGHQMKEC 428
>gi|259127107|gb|ACV94424.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVHQTNIMMQRGNFRGQRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 37.7 bits (86), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + ++ G + + CF C K GH AK+C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSHVHQTNIM--MQRGNFRGQRRIKCFNCGKEGHLAKNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|226345448|gb|ACO49219.1| gag protein [Human immunodeficiency virus 1]
Length = 132
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ + + ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 2 EAMSQAQSASILMQRSNFKGPRKII-------KCFNCGKEGHLARNCRAP--RKKGCWKC 52
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 53 GKEGHQMKDCTERQANFLGK 72
>gi|27464882|gb|AAO16234.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 10/73 (13%)
Query: 158 SDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SGNIMMQRSNFKGPRRIV-------KCFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
>gi|291394962|ref|XP_002713967.1| PREDICTED: zinc finger, CCHC domain containing 9 [Oryctolagus
cuniculus]
Length = 263
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 14/97 (14%)
Query: 178 RGWQTCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD--------- 224
R C++C + GH +C +A++ ++ C+ CGS EH + +C D
Sbjct: 117 RNAMVCFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEITKCKAKIDPALGEFPFA 176
Query: 225 -CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
CF+C + GH ++ CPD K + + C CG H
Sbjct: 177 KCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEH 213
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C++ GH DCP ++ +C +CG + H++ C+ +L
Sbjct: 112 RQAAKRNAMVCFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEITKCKAKIDPALG 171
Query: 273 DLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+ +C++C GHL C N C CG + H
Sbjct: 172 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEH 213
Score = 37.7 bits (86), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGH---LCCVNISDAV 297
K ++ +NA VC C GH + C + ++ CY C H C I A+
Sbjct: 111 KRQAAKRNAMVCFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEITKCKAKIDPAL 170
Query: 298 PGEVS---CFRCGQLGH 311
GE CF CG++GH
Sbjct: 171 -GEFPFAKCFVCGEMGH 186
>gi|259127094|gb|ACV94418.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVHRTNIMMQRGNFRGQRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 37.4 bits (85), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLAKNCRAPRKKG------CWKCGKEGHQMKEC 424
>gi|46946925|gb|AAT06683.1| gag protein [Human immunodeficiency virus 1]
Length = 349
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V+ NI++ R RG + C+NCG+EGH+A NCR+ RKK C+
Sbjct: 215 EAMSQVQQQTNIMMQRGNFRGQKRIK--------CFNCGKEGHLAKNCRAP--RKKGCWK 264
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H +++C++ Q F+ K
Sbjct: 265 CGKEGHQMKECTERQANFLGK 285
Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH AK+C K G C KCG GH M C
Sbjct: 228 MQRGNFRGQKRIKCFNCGKEGHLAKNCRAPRKKG------CWKCGKEGHQMKEC 275
>gi|407740569|gb|AFU33157.1| gag protein [Human immunodeficiency virus 1]
gi|407740574|gb|AFU33161.1| gag protein [Human immunodeficiency virus 1]
gi|407740584|gb|AFU33169.1| gag protein [Human immunodeficiency virus 1]
gi|407740594|gb|AFU33177.1| gag protein [Human immunodeficiency virus 1]
gi|407740599|gb|AFU33181.1| gag protein [Human immunodeficiency virus 1]
gi|407740609|gb|AFU33189.1| gag protein [Human immunodeficiency virus 1]
Length = 489
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSNVQHANIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
>gi|300720228|gb|ADK33124.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
CYNCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 388 CYNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 432
>gi|209576141|gb|ACI64040.1| gag protein [Human immunodeficiency virus 1]
Length = 107
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 4 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 53
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 54 GKEGHQMKDCTERQANFL 71
>gi|186940962|dbj|BAG31096.1| gag polyprotein [Human immunodeficiency virus 1]
Length = 501
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 392 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQIKDCTEGQANFLGK 436
>gi|33088420|gb|AAP93252.1| gag protein [Human immunodeficiency virus 1]
Length = 153
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ S ++ R RGPR C+NCG+EGH+A NC++ RK+ C+ C
Sbjct: 24 EAMSQVQQSGIMMQRGNFRGPRTIK--------CFNCGKEGHLARNCKAP--RKRGCWKC 73
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 74 GKEGHQMKDCNERQVNFLGK 93
>gi|320410281|gb|ADW26910.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++CS+ Q F+ K
Sbjct: 392 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKECSERQANFLGK 436
Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 216 VRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
R K CF C K GH AK+C K G C KCG GH M C
Sbjct: 383 FRNQRKIVKCFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKEC 426
>gi|226345116|gb|ACO49058.1| gag protein [Human immunodeficiency virus 1]
Length = 132
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 2 EAMSQVNNTNIMMQRNNFKGPRRIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKC 52
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 53 GKEGHQMKDCTERQANFLGK 72
>gi|59895756|gb|AAX11264.1| Gag [Expression vector pRT105]
gi|59895758|gb|AAX11265.1| Gag [Expression vector pRT106]
gi|59895760|gb|AAX11266.1| Gag [Expression vector pRT107]
gi|59895762|gb|AAX11267.1| Gag [Expression vector pRT108]
Length = 492
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 10/73 (13%)
Query: 158 SDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SGNIMMQRSNFKGPRRIV-------KCFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
>gi|407740614|gb|AFU33193.1| gag protein [Human immunodeficiency virus 1]
Length = 489
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSNVQHANIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
>gi|346318384|gb|EGX87987.1| zinc knuckle transcription factor (CnjB), putative [Cordyceps
militaris CM01]
Length = 487
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 61/159 (38%), Gaps = 38/159 (23%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLE--------------------HGVRQCS 220
QTCYNC EGH +C K + C CG + H C
Sbjct: 281 QTCYNCSGEGHRVRDCPEPRKDRFACRNCGYVNMSPRSPYLFIDVNVGDSKSGHRATDCE 340
Query: 221 KAQD-----CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLK 275
+ + C C++ GH AKDCP K G A+ C CG GH C +LD+
Sbjct: 341 EEPNLDNVTCRKCEETGHFAKDCP---KGG---ARGCRNCGQEGHFAADCDQPPNLDN-- 392
Query: 276 EVQCYICRCFGHLC--CVNISDAVPGEVSCFRCGQLGHT 312
V C C GH C D +V C C + GHT
Sbjct: 393 -VVCRNCEKNGHFSRDCPEPKDW--SKVKCSNCQEFGHT 428
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 55/157 (35%), Gaps = 49/157 (31%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAK 236
D G C NC E GH+A C E VR+ K Q C+ C GHR +
Sbjct: 250 DSGRPKCSNCDELGHIAKQC--------------PQEKVVRE-VKVQTCYNCSGEGHRVR 294
Query: 237 DCPDKHKSGFQNAQVCLKCG--------------------DSGHDMFSCRNSYSLDDLKE 276
DCP+ K F C CG SGH C +LD+
Sbjct: 295 DCPEPRKDRF----ACRNCGYVNMSPRSPYLFIDVNVGDSKSGHRATDCEEEPNLDN--- 347
Query: 277 VQCYICRCFGHLCCVNISDAVP--GEVSCFRCGQLGH 311
V C C GH + P G C CGQ GH
Sbjct: 348 VTCRKCEETGHF-----AKDCPKGGARGCRNCGQEGH 379
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 27/90 (30%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C++CGEEGH C +A + C CK+ GH AK+CP K
Sbjct: 65 CFSCGEEGHRKFECPNAPQ---------------------MTCNYCKEPGHMAKECPTKP 103
Query: 243 KSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
A C CG+ GH C N +D
Sbjct: 104 ------AMSCNNCGEEGHMSKDCTNPRKID 127
Score = 37.4 bits (85), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 22/109 (20%)
Query: 159 DNIVLRKLLRGPRYF-DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVR 217
DN+ RK + D P G + C NCG+EGH A +C +L++ V
Sbjct: 346 DNVTCRKCEETGHFAKDCPKGGARGCRNCGQEGHFAADCDQPP----------NLDNVV- 394
Query: 218 QCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
C C+K GH ++DCP+ + C C + GH C+
Sbjct: 395 -------CRNCEKNGHFSRDCPEPKD---WSKVKCSNCQEFGHTKVRCK 433
>gi|300719811|gb|ADK32846.1| gag protein [Human immunodeficiency virus 1]
Length = 489
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRA 235
C+NCG EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K RA
Sbjct: 385 CFNCGREGHIAKNCRAP--RKKGCWKCGXEGHQMKDCTERQANFLGKNWPSRA 435
>gi|242031476|gb|ACS77733.1| gag protein [Human immunodeficiency virus 1]
Length = 458
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 350 EAMSQANNTNIMIQRSNFKGPRRI-------VKCFNCGKEGHIARNCRAP--RKKGCWKC 400
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 401 GKEGHQIKDCTERQANFLGK 420
>gi|255710197|gb|ACU30918.1| E3 ubiquitin ligase methyltransferase [Ochlerotatus triseriatus]
Length = 136
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 58/135 (42%), Gaps = 41/135 (30%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD---CFICKKGGHRAKD 237
+ CY C + GH A +C+ + R C+ C H R CS + D C+ C + GH A++
Sbjct: 27 EKCYKCNQMGHFARDCKEDLDR---CYRCNGSGHIARDCSLSPDDSCCYNCNQSGHLARN 83
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
CP+K S DM V CY C GH IS
Sbjct: 84 CPEK----------------SDRDM-------------NVSCYNCNKSGH-----ISRNC 109
Query: 298 P-GEVSCFRCGQLGH 311
P G+ SC+ CG++GH
Sbjct: 110 PTGDKSCYSCGKIGH 124
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKK--PCFVCGSLEHGVRQCSKA-QDCFICKKGGHRAKDC 238
CYNC + GH+A NC R C+ C H R C + C+ C K GH ++DC
Sbjct: 71 CYNCNQSGHLARNCPEKSDRDMNVSCYNCNKSGHISRNCPTGDKSCYSCGKIGHLSRDC 129
>gi|213137675|gb|ACJ44518.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 10/75 (13%)
Query: 156 EISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEH 214
+ ++NI++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H
Sbjct: 366 QTNNNIMMQRSNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKCGQEGH 416
Query: 215 GVRQCSKAQDCFICK 229
++ C++ Q F+ K
Sbjct: 417 QMKDCTERQANFLGK 431
>gi|268533862|ref|XP_002632060.1| Hypothetical protein CBG20443 [Caenorhabditis briggsae]
Length = 381
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 24/109 (22%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR----NSYSLDDLKEVQ-- 278
CF C++ GHR DCP ++ S Q+ VC KCG H + C+ + SL KE +
Sbjct: 199 CFHCREPGHRLVDCPKRNDS--QSDGVCFKCGSMEHSIHQCKKKGVKASSLKFYKEFKFQ 256
Query: 279 -------------CYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
C++C+ GH+ C N++ P +C CG H
Sbjct: 257 AHIAHFPGFPYATCFVCKQIGHISRDCHQNLNGVYPDGGACNVCGATNH 305
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 29/108 (26%)
Query: 182 TCYNCGEEGHMAVNC--RSAVKRKKPCFVCGSLEHGVRQCSKA----------------- 222
C++C E GH V+C R+ + CF CGS+EH + QC K
Sbjct: 198 ACFHCREPGHRLVDCPKRNDSQSDGVCFKCGSMEHSIHQCKKKGVKASSLKFYKEFKFQA 257
Query: 223 ----------QDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
CF+CK+ GH ++DC + + C CG + H
Sbjct: 258 HIAHFPGFPYATCFVCKQIGHISRDCHQNLNGVYPDGGACNVCGATNH 305
>gi|343417616|emb|CCD19979.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 278
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 53/133 (39%), Gaps = 24/133 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C+ C ++GHM C CF C H + C + CF C H + +CP K
Sbjct: 78 CFQCHQKGHMMPMCPQTR-----CFNCDHFGHSSQLCGSKEVCFHCSMPWHTSTECPRK- 131
Query: 243 KSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVS 302
++C +C + GHD C + QC++C HL A EV
Sbjct: 132 ----DMGRLCYRCKEPGHDEAKCP--------QIPQCHMCNQTAHL------VAQCPEVL 173
Query: 303 CFRCGQLGHTGLV 315
C RC Q GH +
Sbjct: 174 CNRCHQKGHMAIA 186
>gi|226345364|gb|ACO49178.1| gag protein [Human immunodeficiency virus 1]
Length = 132
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ +V R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 2 EAMSQVNNTNILVQRSNFKGPKRII-------KCFNCGKEGHIARNCRAP--RKKGCWKC 52
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 53 GKEGHQMKDCTERQANFLGK 72
>gi|209576091|gb|ACI64015.1| gag protein [Human immunodeficiency virus 1]
Length = 107
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 4 EAMSQVQNTNIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 53
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 54 GKEGHQMKDCTERQANFL 71
>gi|407740589|gb|AFU33173.1| gag protein [Human immunodeficiency virus 1]
Length = 489
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSNVQHANIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,279,378,661
Number of Sequences: 23463169
Number of extensions: 233539228
Number of successful extensions: 1773616
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1232
Number of HSP's successfully gapped in prelim test: 21387
Number of HSP's that attempted gapping in prelim test: 1579033
Number of HSP's gapped (non-prelim): 138460
length of query: 317
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 175
effective length of database: 9,027,425,369
effective search space: 1579799439575
effective search space used: 1579799439575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 76 (33.9 bits)