BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021122
(317 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=4 SV=1
Length = 271
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 68/163 (41%), Gaps = 33/163 (20%)
Query: 182 TCYNCGEEGHMAVNC----RSAVKRKKPCFVCGSLEHGVRQC--------SKAQDCFICK 229
TC+ CGEEGHM+ C RS CF CG H R C +K +C+ C
Sbjct: 44 TCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCG 103
Query: 230 KGGHRAKDCPDKH----------------KSGFQNAQVCLKCGDSGHDMFSCRNSY-SLD 272
+ GH ++DCP + G+ + C KCGD+GH C N
Sbjct: 104 QEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYS 163
Query: 273 DLKEVQCYICRCFGHLC--CVNISDAV--PGEVSCFRCGQLGH 311
+ CY C GH+ C N G+ C++CG+ GH
Sbjct: 164 GAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGH 206
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 34/166 (20%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD---------- 224
G TC+ CGE GHM+ +C ++ K C+ CG H R C +Q
Sbjct: 68 GAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKR 127
Query: 225 --------------CFICKKGGHRAKDCPDKHKSGFQNA--QVCLKCGDSGHDMFSCRNS 268
C+ C GH ++DCP+ + G+ A + C KCGD+GH C N
Sbjct: 128 GRSGAQGGYSGDRTCYKCGDAGHISRDCPNG-QGGYSGAGDRTCYKCGDAGHISRDCPNG 186
Query: 269 Y-SLDDLKEVQCYICRCFGHLC--CVNISDAVPGEVSCFRCGQLGH 311
+ +CY C GH+ C + G+ +C++CG+ GH
Sbjct: 187 QGGYSGAGDRKCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGH 232
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 67/162 (41%), Gaps = 32/162 (19%)
Query: 182 TCYNCGEEGHMAVNCRSA----VKRKKPCFVCGSLEHGVRQC--------SKAQDCFICK 229
+C NCG+EGH A C A +R CF CG H R+C + A CF C
Sbjct: 17 SCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCG 76
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC-------RNSYSLDDLK------- 275
+ GH ++DCP+ K G C KCG GH C R Y +
Sbjct: 77 EAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGY 136
Query: 276 --EVQCYICRCFGHLC--CVNISDAV--PGEVSCFRCGQLGH 311
+ CY C GH+ C N G+ +C++CG GH
Sbjct: 137 SGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGH 178
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 20/108 (18%)
Query: 179 GWQTCYNCGEEGHMAVNC-------RSAVKRKKPCFVCGSLEHGVRQCSKA-------QD 224
G +TCY CG+ GH++ +C A RK C+ CG H R+C A +
Sbjct: 166 GDRTCYKCGDAGHISRDCPNGQGGYSGAGDRK--CYKCGESGHMSRECPSAGSTGSGDRA 223
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNA----QVCLKCGDSGHDMFSCRNS 268
C+ C K GH +++CP+ S + + C KCG++GH C +S
Sbjct: 224 CYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCPSS 271
Score = 38.1 bits (87), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 247 QNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSC 303
+++ C CG GH C + S D + C+ C GH+ C G ++C
Sbjct: 13 ESSTSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTC 72
Query: 304 FRCGQLGH 311
FRCG+ GH
Sbjct: 73 FRCGEAGH 80
>sp|P53996|CNBP_MOUSE Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=2
SV=2
Length = 178
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 70/148 (47%), Gaps = 33/148 (22%)
Query: 177 DRGWQ--------TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQ 223
DRG+Q CY CGE GH+A +C ++ + C+ CG H + C + Q
Sbjct: 40 DRGFQFVSSSLPDICYRCGESGHLAKDCD--LQEDEACYNCGRGGHIAKDCKEPKREREQ 97
Query: 224 DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C K GH A+DC + Q C CG+ GH D +V+CY C
Sbjct: 98 CCYNCGKPGHLARDCD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCG 142
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGH 311
GH V I+ + EV+C+RCG+ GH
Sbjct: 143 ETGH---VAINCSKTSEVNCYRCGESGH 167
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 18/111 (16%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKD 237
+ CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KD
Sbjct: 73 EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKD 132
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C C +CG++GH +C + EV CY C GHL
Sbjct: 133 C---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 168
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 90 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 146
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 147 VAINCS-------KTSEVNCYRCGESGH 167
Score = 34.7 bits (78), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 51/135 (37%), Gaps = 54/135 (40%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKS----------------GFQNAQ-----VCLKCGDSGH 260
+ +CF C + GH A++CP GFQ +C +CG+SGH
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 62
Query: 261 DMFSCRNSYSLDDLKEVQ-CYICRCFGHL-------------CCVNISDAVPGEVS---- 302
C DL+E + CY C GH+ CC N PG ++
Sbjct: 63 LAKDC-------DLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCD 113
Query: 303 ------CFRCGQLGH 311
C+ CG+ GH
Sbjct: 114 HADEQKCYSCGEFGH 128
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS 220
CY CGE GH+A+NC + C+ CG H R+C+
Sbjct: 138 CYRCGETGHVAINCSKTSEVN--CYRCGESGHLARECT 173
>sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2
SV=1
Length = 172
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 65/134 (48%), Gaps = 25/134 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ K C+ CG H + C + Q C+ C K GH A+D
Sbjct: 48 CYRCGESGHLAKDCD--LQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 105
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 106 CD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSK 147
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 148 TSEVNCYRCGESGH 161
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 18/111 (16%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKD 237
+ CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KD
Sbjct: 67 KACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKD 126
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C C +CG++GH +C + EV CY C GHL
Sbjct: 127 C---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 162
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 84 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 140
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 141 VAINCS-------KTSEVNCYRCGESGH 161
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS 220
CY CGE GH+A+NC + C+ CG H R+C+
Sbjct: 132 CYRCGETGHVAINCSKTSEVN--CYRCGESGHLARECT 167
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 48/129 (37%)
Query: 222 AQDCFICKKGGHRAKDCPD----------KHKSGFQNAQ-----VCLKCGDSGHDMFSCR 266
+ +CF C + GH A++CP + ++GFQ +C +CG+SGH C
Sbjct: 3 SNECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDC- 61
Query: 267 NSYSLDDLKEVQ-CYICRCFGHL-------------CCVNISDAVPGEVS---------- 302
DL+E + CY C GH+ CC N PG ++
Sbjct: 62 ------DLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDHADEQK 113
Query: 303 CFRCGQLGH 311
C+ CG+ GH
Sbjct: 114 CYSCGEFGH 122
>sp|P36627|BYR3_SCHPO Cellular nucleic acid-binding protein homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=byr3 PE=4 SV=1
Length = 179
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 61/138 (44%), Gaps = 20/138 (14%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD---CFICKKGGHRAKDCP 239
CYNCGE GH A C + C+ C H +C++ Q C+ C GH +DCP
Sbjct: 19 CYNCGENGHQAREC----TKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCP 74
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLK------EVQCYICRCFGHLCCVNI 293
+ Q A+ C KCG GH CR + + + CY C +GH
Sbjct: 75 SS-PNPRQGAE-CYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGH----QA 128
Query: 294 SDAVPGEVSCFRCGQLGH 311
D G V C+ CG++GH
Sbjct: 129 RDCTMG-VKCYSCGKIGH 145
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 15/102 (14%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRS----------AVKRKKPCFVCGSLEHGVRQCSKAQ 223
P R CY CG GH+A +CR+ + C+ CGS H R C+
Sbjct: 76 SPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGV 135
Query: 224 DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
C+ C K GHR+ +C + Q+C KC GH +C
Sbjct: 136 KCYSCGKIGHRSFECQQA-----SDGQLCYKCNQPGHIAVNC 172
Score = 44.7 bits (104), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 56/133 (42%), Gaps = 30/133 (22%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKK--PCFVCGSLEHGVRQC--------------SKAQD 224
+TCY CG GH+ +C S+ ++ C+ CG + H R C +
Sbjct: 58 KTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMN 117
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRC 284
C+ C GH+A+DC K C CG GH F C+ + S L CY C
Sbjct: 118 CYACGSYGHQARDCTMGVK--------CYSCGKIGHRSFECQQA-SDGQL----CYKCNQ 164
Query: 285 FGHLCCVNISDAV 297
GH+ VN + V
Sbjct: 165 PGHI-AVNCTSPV 176
>sp|P62634|CNBP_RAT Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp
PE=2 SV=1
Length = 177
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 69/148 (46%), Gaps = 34/148 (22%)
Query: 177 DRGWQ--------TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQ 223
DRG+Q CY CGE GH+A +C ++ C+ CG H + C + Q
Sbjct: 40 DRGFQFVSSSLPDICYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPKREREQ 96
Query: 224 DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C K GH A+DC + Q C CG+ GH D +V+CY C
Sbjct: 97 CCYNCGKPGHLARDCD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCG 141
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGH 311
GH V I+ + EV+C+RCG+ GH
Sbjct: 142 ETGH---VAINCSKTSEVNCYRCGESGH 166
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 73 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 132
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 133 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 167
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 63/158 (39%), Gaps = 41/158 (25%)
Query: 183 CYNCGEEGHMAVNCRSA-----------------------VKRKKP--CFVCGSLEHGVR 217
C+ CG GH A C + V P C+ CG H +
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 218 QCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKE 276
C +D C+ C +GGH AKDC + + + Q C CG GH C D E
Sbjct: 66 DCDLQEDACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADE 116
Query: 277 VQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
+CY C FGH+ D +V C+RCG+ GH +
Sbjct: 117 QKCYSCGEFGHI----QKDCT--KVKCYRCGETGHVAI 148
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 89 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 145
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 146 VAINCS-------KTSEVNCYRCGESGH 166
Score = 38.5 bits (88), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 53/134 (39%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKS----------------GFQNAQ-----VCLKCGDSGH 260
+ +CF C + GH A++CP GFQ +C +CG+SGH
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 62
Query: 261 DMFSCRNSYSLDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----- 302
C DL+E CY C GH+ CC N PG ++
Sbjct: 63 LAKDC-------DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDH 113
Query: 303 -----CFRCGQLGH 311
C+ CG+ GH
Sbjct: 114 ADEQKCYSCGEFGH 127
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS 220
CY CGE GH+A+NC + C+ CG H R+C+
Sbjct: 137 CYRCGETGHVAINCSKTSEVN--CYRCGESGHLARECT 172
>sp|Q5R5R5|CNBP_PONAB Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2
SV=1
Length = 177
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 69/148 (46%), Gaps = 34/148 (22%)
Query: 177 DRGWQ--------TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQ 223
DRG+Q CY CGE GH+A +C ++ C+ CG H + C + Q
Sbjct: 40 DRGFQFVSSSLPDICYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPKREREQ 96
Query: 224 DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C K GH A+DC + Q C CG+ GH D +V+CY C
Sbjct: 97 CCYNCGKPGHLARDCD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCG 141
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGH 311
GH V I+ + EV+C+RCG+ GH
Sbjct: 142 ETGH---VAINCSKTSEVNCYRCGESGH 166
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 73 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 132
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 133 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 167
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 63/158 (39%), Gaps = 41/158 (25%)
Query: 183 CYNCGEEGHMAVNCRSA-----------------------VKRKKP--CFVCGSLEHGVR 217
C+ CG GH A C + V P C+ CG H +
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 218 QCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKE 276
C +D C+ C +GGH AKDC + + + Q C CG GH C D E
Sbjct: 66 DCDLQEDACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADE 116
Query: 277 VQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
+CY C FGH+ D +V C+RCG+ GH +
Sbjct: 117 QKCYSCGEFGHI----QKDCT--KVKCYRCGETGHVAI 148
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 89 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 145
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 146 VAINCS-------KTSEVNCYRCGESGH 166
Score = 38.5 bits (88), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 53/134 (39%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKS----------------GFQNAQ-----VCLKCGDSGH 260
+ +CF C + GH A++CP GFQ +C +CG+SGH
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 62
Query: 261 DMFSCRNSYSLDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----- 302
C DL+E CY C GH+ CC N PG ++
Sbjct: 63 LAKDC-------DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDH 113
Query: 303 -----CFRCGQLGH 311
C+ CG+ GH
Sbjct: 114 ADEQKCYSCGEFGH 127
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS 220
CY CGE GH+A+NC + C+ CG H R+C+
Sbjct: 137 CYRCGETGHVAINCSKTSEVN--CYRCGESGHLARECT 172
>sp|P62633|CNBP_HUMAN Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1
SV=1
Length = 177
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 69/148 (46%), Gaps = 34/148 (22%)
Query: 177 DRGWQ--------TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQ 223
DRG+Q CY CGE GH+A +C ++ C+ CG H + C + Q
Sbjct: 40 DRGFQFVSSSLPDICYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPKREREQ 96
Query: 224 DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C K GH A+DC + Q C CG+ GH D +V+CY C
Sbjct: 97 CCYNCGKPGHLARDCD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCG 141
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGH 311
GH V I+ + EV+C+RCG+ GH
Sbjct: 142 ETGH---VAINCSKTSEVNCYRCGESGH 166
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 73 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 132
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 133 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 167
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 63/158 (39%), Gaps = 41/158 (25%)
Query: 183 CYNCGEEGHMAVNCRSA-----------------------VKRKKP--CFVCGSLEHGVR 217
C+ CG GH A C + V P C+ CG H +
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 218 QCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKE 276
C +D C+ C +GGH AKDC + + + Q C CG GH C D E
Sbjct: 66 DCDLQEDACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADE 116
Query: 277 VQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
+CY C FGH+ D +V C+RCG+ GH +
Sbjct: 117 QKCYSCGEFGHI----QKDCT--KVKCYRCGETGHVAI 148
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 89 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 145
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 146 VAINCS-------KTSEVNCYRCGESGH 166
Score = 38.5 bits (88), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 53/134 (39%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKS----------------GFQNAQ-----VCLKCGDSGH 260
+ +CF C + GH A++CP GFQ +C +CG+SGH
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 62
Query: 261 DMFSCRNSYSLDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----- 302
C DL+E CY C GH+ CC N PG ++
Sbjct: 63 LAKDC-------DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDH 113
Query: 303 -----CFRCGQLGH 311
C+ CG+ GH
Sbjct: 114 ADEQKCYSCGEFGH 127
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS 220
CY CGE GH+A+NC + C+ CG H R+C+
Sbjct: 137 CYRCGETGHVAINCSKTSEVN--CYRCGESGHLARECT 172
>sp|Q3T0Q6|CNBP_BOVIN Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2
SV=1
Length = 170
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 26/134 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 47 CYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 103
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAV 297
C + Q C CG+ GH D +V+CY C GH V I+ +
Sbjct: 104 CD------HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSK 145
Query: 298 PGEVSCFRCGQLGH 311
EV+C+RCG+ GH
Sbjct: 146 TSEVNCYRCGESGH 159
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 63/151 (41%), Gaps = 34/151 (22%)
Query: 183 CYNCGEEGHMAVNCRSA----------------VKRKKP--CFVCGSLEHGVRQCSKAQD 224
C+ CG GH A C + V P C+ CG H + C +D
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 65
Query: 225 -CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C +GGH AKDC + + + Q C CG GH C D E +CY C
Sbjct: 66 ACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCG 116
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGHTGL 314
FGH+ D +V C+RCG+ GH +
Sbjct: 117 EFGHI----QKDCT--KVKCYRCGETGHVAI 141
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 66 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 125
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 126 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 160
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 82 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 138
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 139 VAINCS-------KTSEVNCYRCGESGH 159
Score = 38.1 bits (87), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 50/127 (39%), Gaps = 46/127 (36%)
Query: 222 AQDCFICKKGGHRAKDCPD---------KHKSGFQNAQ-----VCLKCGDSGHDMFSCRN 267
+ +CF C + GH A++CP GFQ +C +CG+SGH C
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC-- 60
Query: 268 SYSLDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----------CF 304
DL+E CY C GH+ CC N PG ++ C+
Sbjct: 61 -----DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDHADEQKCY 113
Query: 305 RCGQLGH 311
CG+ GH
Sbjct: 114 SCGEFGH 120
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS 220
CY CGE GH+A+NC + C+ CG H R+C+
Sbjct: 130 CYRCGETGHVAINCSKTSEVN--CYRCGESGHLARECT 165
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 58.5 bits (140), Expect = 6e-08, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCF--ICKKG 231
+P +G C+NCG+EGH+A NCR+ RKK C+ CG H ++ C + F I G
Sbjct: 387 NPIRKGTIKCFNCGKEGHIARNCRAP--RKKGCWKCGQEGHQMKDCRNGKQFFRQILASG 444
Query: 232 GHRAK 236
GH A+
Sbjct: 445 GHEAR 449
Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
CF C K GH A++C K G C KCG GH M CRN
Sbjct: 396 CFNCGKEGHIARNCRAPRKKG------CWKCGQEGHQMKDCRN 432
>sp|P24740|POL_HV1U4 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate U455) GN=gag-pol PE=1 SV=3
Length = 1428
Score = 57.0 bits (136), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ R RGPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 361 EAMSQVQQTSIMMQRGNFRGPRRI--------KCFNCGKEGHLAKNCRAP--RKKGCWKC 410
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 411 GKEGHQMKDCTERQANFL 428
Score = 41.6 bits (96), Expect = 0.008, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + + + ++ G + + CF C K GH AK+C
Sbjct: 346 CQGVGGPGHKARVLAEAMSQVQQTSIM--MQRGNFRGPRRIKCFNCGKEGHLAKNCRAPR 403
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 404 KKG------CWKCGKEGHQMKDC 420
>sp|O65639|CSP1_ARATH Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=2 SV=1
Length = 299
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 13/96 (13%)
Query: 183 CYNCGEEGHMAVNC---------RSAVKRKKPCFVCGSLEHGVRQCSK----AQDCFICK 229
CY CG+ GH A +C RS C+ CG + H R C+ ++ C+ C
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCG 259
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
GH A+DC + G N C KCG GH C
Sbjct: 260 GSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 63/161 (39%), Gaps = 36/161 (22%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKK---------PCFVCGSLEHGVRQCSKAQ---------- 223
CYNCG+ GH A +C SA + C+ CG + H R C++
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193
Query: 224 -----DCFICKKGGHRAKDCPDK-----HKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDD 273
C+ C GH A+DC K +SG + C CG GH C +
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDC----ATKR 249
Query: 274 LKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
CY C GHL C S + +C++CG+ GH
Sbjct: 250 QPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGH 290
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 55/149 (36%), Gaps = 30/149 (20%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCP--- 239
CYNCGE GH++ +C R+ + C+ C GH A+DC
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGG----------ERRSRGGEGCYNCGDTGHFARDCTSAG 151
Query: 240 --DKHKSGFQNAQVCLKCGDSGHDMFSC-RNSYSLDDLKEV------QCYICRCFGHLC- 289
D+ + C CGD GH C + S D + CY C GH
Sbjct: 152 NGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFAR 211
Query: 290 -CV------NISDAVPGEVSCFRCGQLGH 311
C N+ G +C+ CG +GH
Sbjct: 212 DCTQKVAAGNVRSGGGGSGTCYSCGGVGH 240
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 176 PDRGWQTCYNCGEEGHMAVNC----RSAVKRKKPCFVCGSLEHGVRQCS 220
P RG CY CG GH+A +C C+ CG H R+CS
Sbjct: 251 PSRG---CYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECS 296
>sp|P24736|GAG_HV1U4 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate U455) GN=gag PE=1 SV=3
Length = 493
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ R RGPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 361 EAMSQVQQTSIMMQRGNFRGPRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 410
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 411 GKEGHQMKDCTERQANFLGK 430
Score = 39.7 bits (91), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G + + CF C K GH AK+C
Sbjct: 345 ACQGVGGPGHKARVLAEAMSQVQQTSIM--MQRGNFRGPRRIKCFNCGKEGHLAKNCRAP 402
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 403 RKKG------CWKCGKEGHQMKDC 420
>sp|P53849|GIS2_YEAST Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GIS2 PE=1 SV=1
Length = 153
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 10/130 (7%)
Query: 183 CYNCGEEGHMAVNCRSA-VKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
CYNC + GH+ +C K C+ CG H +C+ Q CF C + GH +++CP+
Sbjct: 25 CYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECT-VQRCFNCNQTGHISRECPEP 83
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEV 301
K+ + C KCG H C D + ++CY C GH+ S +
Sbjct: 84 KKTSRFSKVSCYKCGGPNHMAKDCMKE---DGISGLKCYTCGQAGHM-----SRDCQNDR 135
Query: 302 SCFRCGQLGH 311
C+ C + GH
Sbjct: 136 LCYNCNETGH 145
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 17/89 (19%)
Query: 181 QTCYNCGEEGHMAVNC----RSAVKRKKPCFVCGSLEHGVRQCSK-----AQDCFICKKG 231
Q C+NC + GH++ C +++ K C+ CG H + C K C+ C +
Sbjct: 65 QRCFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISGLKCYTCGQA 124
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
GH ++DC QN ++C C ++GH
Sbjct: 125 GHMSRDC--------QNDRLCYNCNETGH 145
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 48/126 (38%), Gaps = 19/126 (15%)
Query: 203 KKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQ--------------- 247
+K C+VCG + H C + C+ C K GH DC F+
Sbjct: 3 QKACYVCGKIGHLAEDCDSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSEC 62
Query: 248 NAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVPGEVSCFR 305
Q C C +GH C +V CY C H+ C+ D + G + C+
Sbjct: 63 TVQRCFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMK-EDGISG-LKCYT 120
Query: 306 CGQLGH 311
CGQ GH
Sbjct: 121 CGQAGH 126
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 182 TCYNCGEEGHMAVNCR-----SAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAK 236
+CY CG HMA +C S +K C+ CG H R C + C+ C + GH +K
Sbjct: 93 SCYKCGGPNHMAKDCMKEDGISGLK----CYTCGQAGHMSRDCQNDRLCYNCNETGHISK 148
Query: 237 DCP 239
DCP
Sbjct: 149 DCP 151
>sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain-containing protein 13 OS=Homo sapiens
GN=ZCCHC13 PE=2 SV=1
Length = 166
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 57/125 (45%), Gaps = 24/125 (19%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-----KAQDCFICKKGGHRAK 236
TCY CGE G A NC V C+ CG H + C + Q C+ C + GH A+
Sbjct: 46 TCYCCGESGRNAKNC---VLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLAR 102
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDA 296
DC D+ Q Q C CG GH D +V+CY C GH+ +N S A
Sbjct: 103 DC-DR-----QKEQKCYSCGKLGHIQ---------KDCAQVKCYRCGEIGHV-AINCSKA 146
Query: 297 VPGEV 301
PG++
Sbjct: 147 RPGQL 151
Score = 39.7 bits (91), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
DP Q CY CG GH+A +C ++++ C+ CG L H + C++ + C+ C + GH
Sbjct: 82 DPKRERRQHCYTCGRLGHLARDCDR--QKEQKCYSCGKLGHIQKDCAQVK-CYRCGEIGH 138
Query: 234 RAKDC 238
A +C
Sbjct: 139 VAINC 143
>sp|O41798|POL_HV19N Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate 92NG083) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 53.5 bits (127), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+
Sbjct: 393 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFL 435
Score = 39.7 bits (91), Expect = 0.029, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 393 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 427
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 53.5 bits (127), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCF----ICK 229
+P +G C+NCG+EGH+A NCR+ RK+ C+ CG H ++ C + +
Sbjct: 387 NPNRKGPIKCFNCGKEGHIAKNCRAP--RKRGCWKCGQEGHQMKDCKNGRQANFFREVLA 444
Query: 230 KGGHRAK 236
GGH A+
Sbjct: 445 SGGHEAR 451
Score = 45.8 bits (107), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
CF C K GH AK+C K G C KCG GH M C+N + +EV
Sbjct: 396 CFNCGKEGHIAKNCRAPRKRG------CWKCGQEGHQMKDCKNGRQANFFREV 442
>sp|Q75002|POL_HV1ET Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate ETH2220) GN=gag-pol PE=3 SV=3
Length = 1439
Score = 53.1 bits (126), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 173 FDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCF 226
F P R + C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F
Sbjct: 380 FKGPKRAIK-CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANF 430
Score = 40.8 bits (94), Expect = 0.014, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+A CF C K GH A++C K G C KCG GH M C
Sbjct: 385 RAIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 423
>sp|Q8R1J3|ZCHC9_MOUSE Zinc finger CCHC domain-containing protein 9 OS=Mus musculus
GN=Zcchc9 PE=2 SV=1
Length = 273
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C++ GH DCP +S +C +CG + H+M CR + +L
Sbjct: 120 RQAAKKNAMVCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPALG 179
Query: 273 DLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+ +C++C GHL C N SC CG + H
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNTKGVYADGGSCKLCGSVEH 221
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C + ++ + C+ CGS EH + +C D CF+
Sbjct: 129 VCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPALGEFPFAKCFV 188
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
C + GH ++ CPD K + + C CG H CR + + D + V
Sbjct: 189 CGEMGHLSRSCPDNTKGVYADGGSCKLCGSVEHFKKDCRENQNSDRIITV 238
Score = 38.9 bits (89), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGH---LCCVNISDAV 297
K ++ +NA VC C GH + C D+ CY C H C N+ A+
Sbjct: 119 KRQAAKKNAMVCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPAL 178
Query: 298 PGEVS---CFRCGQLGH 311
GE CF CG++GH
Sbjct: 179 -GEFPFAKCFVCGEMGH 194
>sp|P20875|POL_HV1JR Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate JRCSF) GN=gag-pol PE=1 SV=3
Length = 1439
Score = 53.1 bits (126), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+
Sbjct: 392 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKECTERQANFL 434
Score = 40.0 bits (92), Expect = 0.020, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNPATIMMQRGNFRNQRKNVKCFNCGKEGHIARNCRAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 KKG------CWKCGKEGHQMKEC 426
>sp|O12158|POL_HV192 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate 92BR025) GN=gag-pol PE=1 SV=2
Length = 1431
Score = 53.1 bits (126), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCF 226
C+NCG+EGH+A NCR+ RKK C+ CG H V+ C++ Q F
Sbjct: 389 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQVKDCTERQANF 430
Score = 37.7 bits (86), Expect = 0.13, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH + C
Sbjct: 389 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQVKDC 423
>sp|P04589|POL_HV1EL Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate ELI) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 53.1 bits (126), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 9/74 (12%)
Query: 154 TVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLE 213
T ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG
Sbjct: 371 TNSVTTAMMQRGNFKGPRKI-------IKCFNCGKEGHIAKNCRAP--RKKGCWRCGKEG 421
Query: 214 HGVRQCSKAQDCFI 227
H ++ C++ Q F+
Sbjct: 422 HQLKDCTERQANFL 435
Score = 38.5 bits (88), Expect = 0.065, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + ++ G + K CF C K GH AK+C
Sbjct: 350 CQGVGGPSHKARVLAEAMSQATNSVTTAMMQRGNFKGPRKIIKCFNCGKEGHIAKNCRAP 409
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C +CG GH + C
Sbjct: 410 RKKG------CWRCGKEGHQLKDC 427
>sp|Q9QBZ9|POL_HV197 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 97ZR-EQTB11) GN=gag-pol PE=3 SV=2
Length = 1429
Score = 52.8 bits (125), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCF 226
C+NCG+EGH+A NCR+ RKK C+ CG H ++ CS+ Q F
Sbjct: 387 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCSERQANF 428
Score = 39.7 bits (91), Expect = 0.031, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 421
>sp|P04588|POL_HV1MA Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate MAL) GN=gag-pol PE=1 SV=3
Length = 1440
Score = 52.4 bits (124), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 398 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFL 440
Score = 41.6 bits (96), Expect = 0.008, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G H A A+ + ++ G + K CF C K GH A++C
Sbjct: 356 CQGVGGPSHKARVLAEAMSQATNSTAAIMMQRGNFKGQKRIKCFNCGKEGHLARNCRAPR 415
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 416 KKG------CWKCGKEGHQMKDC 432
>sp|P35963|POL_HV1Y2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate YU-2) GN=gag-pol PE=1 SV=3
Length = 1435
Score = 52.4 bits (124), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 392 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKDCTERQANFL 434
Score = 42.7 bits (99), Expect = 0.004, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH AK+C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKTVKCFNCGKEGHIAKNCRAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 KKG------CWKCGKEGHQMKDC 426
>sp|P12497|POL_HV1N5 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate NY5) GN=gag-pol PE=1 SV=4
Length = 1435
Score = 52.0 bits (123), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 392 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKDCTERQANFL 434
Score = 41.6 bits (96), Expect = 0.007, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + + R K CF C K GH AK+C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNPATIMIQKGNFRNQRKTVKCFNCGKEGHIAKNCRAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 KKG------CWKCGKEGHQMKDC 426
>sp|P03367|POL_HV1BR Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BRU/LAI) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 52.0 bits (123), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 392 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFL 434
Score = 40.8 bits (94), Expect = 0.012, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIVKCFNCGKEGHIARNCRAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 KKG------CWKCGKEGHQMKDC 426
>sp|O89940|POL_HV1SE Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate SE6165) GN=gag-pol PE=3 SV=3
Length = 1433
Score = 52.0 bits (123), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 173 FDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCF 226
F P R + C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F
Sbjct: 384 FKGPRRTIK-CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANF 434
Score = 39.7 bits (91), Expect = 0.032, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 393 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 427
>sp|P20892|POL_HV1OY Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate OYI) GN=gag-pol PE=3 SV=3
Length = 1434
Score = 52.0 bits (123), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 391 CFNCGKEGHIAKNCRAP--RKKGCWKCGREGHQMKDCTERQANFL 433
Score = 40.4 bits (93), Expect = 0.016, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + V ++ G + K CF C K GH AK+C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVNSVTVM--MQKGNFKNQRKTVKCFNCGKEGHIAKNCRAP 407
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 RKKG------CWKCGREGHQMKDC 425
>sp|P03369|POL_HV1A2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate ARV2/SF2) GN=gag-pol PE=1 SV=3
Length = 1437
Score = 52.0 bits (123), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 394 CFNCGKEGHIAKNCRAP--RKKGCWRCGREGHQMKDCTERQANFL 436
Score = 40.4 bits (93), Expect = 0.019, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 217 RQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
R K CF C K GH AK+C K G C +CG GH M C
Sbjct: 386 RNQRKTVKCFNCGKEGHIAKNCRAPRKKG------CWRCGREGHQMKDC 428
>sp|O93215|POL_HV190 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate 90CF056) GN=gag-pol PE=3 SV=4
Length = 1435
Score = 52.0 bits (123), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 178 RGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCF 226
R + C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F
Sbjct: 388 RKFVKCFNCGKEGHIARNCRAP--RKKGCWKCGREGHQMKDCTERQAKF 434
Score = 38.9 bits (89), Expect = 0.054, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 393 CFNCGKEGHIARNCRAPRKKG------CWKCGREGHQMKDC 427
>sp|Q9QBZ5|POL_HV1MP Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F2 (isolate MP255) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 51.6 bits (122), Expect = 8e-06, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCF 226
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F
Sbjct: 387 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKDCTERQANF 428
Score = 39.3 bits (90), Expect = 0.040, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 421
>sp|P0C6F2|POL_HV1LW Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate LW123) GN=gag-pol PE=1 SV=1
Length = 1435
Score = 51.6 bits (122), Expect = 8e-06, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCF 226
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F
Sbjct: 392 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKDCTERQANF 433
Score = 40.8 bits (94), Expect = 0.012, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIVKCFNCGKEGHIARNCRAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 KKG------CWKCGKEGHQMKDC 426
>sp|Q9QBY3|POL_HV196 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 96CM-MP535) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 51.6 bits (122), Expect = 8e-06, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCF 226
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F
Sbjct: 387 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKDCTERQANF 428
Score = 39.3 bits (90), Expect = 0.036, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
K CF C K GH A++C K G C KCG GH M C
Sbjct: 383 KIVKCFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 421
>sp|P04585|POL_HV1H2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate HXB2) GN=gag-pol PE=1 SV=4
Length = 1435
Score = 51.6 bits (122), Expect = 8e-06, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 392 CFNCGKEGHTARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFL 434
Score = 42.0 bits (97), Expect = 0.007, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIVKCFNCGKEGHTARNCRAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 KKG------CWKCGKEGHQMKDC 426
>sp|P03366|POL_HV1B1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH10) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 51.6 bits (122), Expect = 8e-06, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 392 CFNCGKEGHTARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFL 434
Score = 42.0 bits (97), Expect = 0.006, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNTATIMMQRGNFRNQRKMVKCFNCGKEGHTARNCRAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 KKG------CWKCGKEGHQMKDC 426
>sp|O12157|GAG_HV192 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate 92BR025) GN=gag PE=3 SV=3
Length = 496
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H V+ C++ Q F+ K
Sbjct: 389 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQVKDCTERQANFLGK 433
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH + C
Sbjct: 389 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQVKDC 423
>sp|Q73368|POL_HV1B9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (strain 89.6) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 51.2 bits (121), Expect = 9e-06, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCF 226
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F
Sbjct: 392 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKDCTERQANF 433
Score = 42.4 bits (98), Expect = 0.005, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH AK+C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKTVKCFNCGKEGHIAKNCRAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 KKG------CWKCGKEGHQMKDC 426
>sp|P18802|POL_HV1ND Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate NDK) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 51.2 bits (121), Expect = 9e-06, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 390 CFNCGKEGHTAKNCRAP--RKKGCWKCGREGHQMKDCTERQANFL 432
Score = 42.4 bits (98), Expect = 0.005, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + ++ G + K+ CF C K GH AK+C
Sbjct: 347 CQGVGGPGHKARVLAEAMSQVTGSATAVMMQRGNFKGPRKSIKCFNCGKEGHTAKNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGREGHQMKDC 424
>sp|P12499|POL_HV1Z2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate Z2/CDC-Z34) GN=gag-pol PE=1 SV=3
Length = 1436
Score = 51.2 bits (121), Expect = 9e-06, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ R+K C+ CG H ++ C++ Q F+
Sbjct: 394 CFNCGKEGHIAKNCRAP--RRKGCWKCGKEGHQLKDCTERQANFL 436
Score = 38.5 bits (88), Expect = 0.075, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
K CF C K GH AK+C + G C KCG GH + C
Sbjct: 390 KTIKCFNCGKEGHIAKNCRAPRRKG------CWKCGKEGHQLKDC 428
>sp|O89290|POL_HV193 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate 93BR020) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 51.2 bits (121), Expect = 9e-06, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCF 226
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F
Sbjct: 387 CFNCGKEGHIAKNCRAP--RKKGCWKCGREGHQMKDCTERQAKF 428
Score = 40.0 bits (92), Expect = 0.025, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHIAKNCRAPRKKG------CWKCGREGHQMKDC 421
>sp|P0C1K7|GAG_HV19N Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate 92NG083) GN=gag PE=3 SV=2
Length = 497
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 393 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 437
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 393 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 427
>sp|Q8N567|ZCHC9_HUMAN Zinc finger CCHC domain-containing protein 9 OS=Homo sapiens
GN=ZCCHC9 PE=2 SV=2
Length = 271
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C +A++ + C+ CGS EH + +C D CF+
Sbjct: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
C + GH ++ CPD K + + C CG H C S + + + V
Sbjct: 189 CGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSERMVTV 238
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C+K GH DCP ++ +C +CG + H++ C+ +L
Sbjct: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 179
Query: 273 DLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+ +C++C GHL C N C CG + H
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEH 221
Score = 39.3 bits (90), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 14/89 (15%)
Query: 170 PRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRK------KPCFVCGSLEHGVRQC---- 219
P + D G CY CG H C++ V CFVCG + H R C
Sbjct: 144 PAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCPDNP 203
Query: 220 ----SKAQDCFICKKGGHRAKDCPDKHKS 244
+ C +C H KDCP+ S
Sbjct: 204 KGLYADGGGCKLCGSVEHLKKDCPESQNS 232
Score = 38.9 bits (89), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVP 298
K ++ +NA VC C GH + C + D+ CY C H C D
Sbjct: 119 KRQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPAL 178
Query: 299 GEVS---CFRCGQLGH 311
GE CF CG++GH
Sbjct: 179 GEFPFAKCFVCGEMGH 194
>sp|Q9QSR3|POL_HV1VI Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate VI850) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 51.2 bits (121), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCF 226
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F
Sbjct: 386 CFNCGKEGHIARNCRAP--RKKGCWKCGREGHQMKDCTERQANF 427
Score = 38.9 bits (89), Expect = 0.053, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 386 CFNCGKEGHIARNCRAPRKKG------CWKCGREGHQMKDC 420
>sp|Q9QC00|GAG_HV197 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 97ZR-EQTB11) GN=gag PE=3 SV=2
Length = 495
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ CS+ Q F+ K
Sbjct: 387 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCSERQANFLGK 431
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 421
>sp|P05961|POL_HV1MN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate MN) GN=gag-pol PE=1 SV=3
Length = 1441
Score = 51.2 bits (121), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RK+ C+ CG H ++ C++ Q F+
Sbjct: 395 CFNCGKEGHIAKNCRAP--RKRGCWKCGKEGHQMKDCTERQANFL 437
Score = 41.2 bits (95), Expect = 0.010, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH AK+C
Sbjct: 353 CQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIIKCFNCGKEGHIAKNCRAPR 412
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 413 KRG------CWKCGKEGHQMKDC 429
>sp|P04587|POL_HV1B5 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH5) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 50.8 bits (120), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NC++ RKK C+ CG H ++ C++ Q F+
Sbjct: 392 CFNCGKEGHIARNCKAP--RKKGCWKCGKEGHQMKDCTERQANFL 434
Score = 41.6 bits (96), Expect = 0.008, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSTTIMMQRGNFRNQRKIVKCFNCGKEGHIARNCKAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 KKG------CWKCGKEGHQMKDC 426
>sp|P20873|GAG_HV1JR Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate JRCSF) GN=gag PE=3 SV=3
Length = 504
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 392 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 436
Score = 38.1 bits (87), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 183 CYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + P + ++ G R K CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNPATIM--MQRGNFRNQRKNVKCFNCGKEGHIARNCRA 407
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 PRKKG------CWKCGKEGHQMKEC 426
>sp|Q9QBZ1|POL_HV1M2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F2 (isolate MP257) GN=gag-pol PE=3 SV=3
Length = 1434
Score = 50.4 bits (119), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCF 226
C+NCG+EGH+A NCR+ RK+ C+ CG H ++ C++ Q F
Sbjct: 391 CFNCGKEGHIARNCRAP--RKRGCWKCGQEGHQMKDCTERQANF 432
Score = 39.3 bits (90), Expect = 0.039, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 391 CFNCGKEGHIARNCRAPRKRG------CWKCGQEGHQMKDC 425
>sp|Q9WC63|POL_HV1S9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9173) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCF 226
C+NCG++GH+A NCR+ RKK C+ CG H ++ C++ Q F
Sbjct: 391 CFNCGKQGHIAKNCRAP--RKKGCWKCGKEGHQMKDCTERQANF 432
Score = 40.4 bits (93), Expect = 0.019, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 391 CFNCGKQGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 425
>sp|Q9WC54|POL_HV1S2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9280) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCF 226
C+NCG++GH+A NCR+ RKK C+ CG H ++ C++ Q F
Sbjct: 391 CFNCGKQGHIAKNCRAP--RKKGCWKCGKEGHQMKDCTERQANF 432
Score = 40.4 bits (93), Expect = 0.020, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 391 CFNCGKQGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 425
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,204,107
Number of Sequences: 539616
Number of extensions: 5900625
Number of successful extensions: 72438
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 663
Number of HSP's that attempted gapping in prelim test: 58864
Number of HSP's gapped (non-prelim): 11786
length of query: 317
length of database: 191,569,459
effective HSP length: 117
effective length of query: 200
effective length of database: 128,434,387
effective search space: 25686877400
effective search space used: 25686877400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)