BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021124
(317 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B3E7S8|RPOB_GEOLS DNA-directed RNA polymerase subunit beta OS=Geobacter lovleyi
(strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rpoB PE=3
SV=1
Length = 1497
Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 60/144 (41%), Gaps = 18/144 (12%)
Query: 65 WADLLCSGRQSPQSVDVALVFVGRELQSSHISGNKHADLALVDTLKVSFTKSNFSMAFPY 124
W D C+ P + A + +L S ++G + DLAL D L TKS +
Sbjct: 421 WPD--CTILNGPTMLTAAELQNAEQLIGSLLNGTRPVDLALKDRLSSDLTKSLKKLDLKQ 478
Query: 125 IVSAGEETMESSLFSEFTEACVDDFKVANVAFSESCTVEG----ENFLKLADL--HSVHD 178
V E + L E A VAN F + + G E+F+KL DL +D
Sbjct: 479 PVP---ERLLEQLADELNSA------VANAEFFQRDLIAGLELPESFIKLMDLIEQGGYD 529
Query: 179 HLRLRAEKSLKGQADLIVVCYGDT 202
R R E L+ L+ V YGD+
Sbjct: 530 ENRRRIE-GLRRNRMLLEVAYGDS 552
>sp|P09479|ACHA_CHICK Acetylcholine receptor subunit alpha OS=Gallus gallus GN=CHRNA1
PE=1 SV=1
Length = 456
Score = 34.7 bits (78), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 204 SMKQPKQPRPESEVISELIDSVEKSGAK--YTVLYVSDPVRSVQYPSHQELERFLAESVA 261
+MK+P + +P+ ++ +E ID E SG + V + S ++ + E +++AE++
Sbjct: 347 TMKRPSRDKPDKKIFAEDIDISEISGKQGPVPVNFYSPLTKNPDVKNAIEGIKYIAETMK 406
Query: 262 GNKSANNTGCDEVCQFKSSLFEGILVGIVLLLILVSGLCCMMG 304
++ ++N DE +F + + + +L+ I +L+ ++ L G
Sbjct: 407 SDQESSN-AADE-WKFVAMVLDHLLLVIFMLVCIIGTLAVFAG 447
>sp|Q8CXP9|GLMU_OCEIH Bifunctional protein GlmU OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=glmU PE=3
SV=1
Length = 455
Score = 32.3 bits (72), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 24/100 (24%)
Query: 179 HLRLRAEKSLKGQADLIVVCYGDTQSMKQPKQPRPESEVISELIDSVEKSGAKYTVL--Y 236
H L+AE LK + + VV GDT P +E ELI +K+GAK ++L
Sbjct: 81 HAVLQAEDLLKDEKGVTVVACGDT--------PLIRAETFEELIQYHKKTGAKASILTTK 132
Query: 237 VSDPV--------------RSVQYPSHQELERFLAESVAG 262
V +P R V++ E ER + E G
Sbjct: 133 VENPTGYGRVVRNDQDEVERIVEHKDANEGERLIQEINTG 172
>sp|O78439|YCF46_GUITH Uncharacterized AAA domain-containing protein ycf46 OS=Guillardia
theta GN=ycf46 PE=3 SV=1
Length = 506
Score = 31.6 bits (70), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 15/142 (10%)
Query: 154 VAFSESCTVEGENFLKLADLH------SVHDHLRLRAEKSLKGQADLIVVCYGD------ 201
+ F + T+E + L D H SV LR A KSL+ Q+ IV+ D
Sbjct: 87 LEFIDKFTLETPLLVLLKDFHLFLNDISVSRKLRNLA-KSLRNQSKTIVIIASDLTIPLN 145
Query: 202 -TQSMKQPKQPRPE-SEVISELIDSVEKSGAKYTVLYVSDPVRSVQYPSHQELERFLAES 259
+ S+ P P+ SE+ EL+ E G + + V++ Q S +++ R LA+
Sbjct: 146 LSDSITILHFPLPKNSEIKKELLRIQESLGYSLPEHSLDNLVKASQGLSLEKIRRVLAKI 205
Query: 260 VAGNKSANNTGCDEVCQFKSSL 281
+A K N D V + K L
Sbjct: 206 IATYKEINVESLDLVFKEKQQL 227
>sp|B0THS2|PNP_HELMI Polyribonucleotide nucleotidyltransferase OS=Heliobacterium
modesticaldum (strain ATCC 51547 / Ice1) GN=pnp PE=3
SV=1
Length = 709
Score = 31.6 bits (70), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 70/166 (42%), Gaps = 31/166 (18%)
Query: 122 FPYIVSAGEETMESSLFSEFTEACVDDFKVANVAFSESCTV---------EGENFLKLAD 172
FPY + E +ES+ + C + N V EGE+F L+D
Sbjct: 417 FPYTIRLVSEAVESNGSTSMASVCGSTLSLMNAGVPIKKPVAGIAMGLIKEGEHFSILSD 476
Query: 173 LHSVHDHLRLRAEKSLKGQADLIVVCYGD-----------TQSMKQPKQPRPESEVISEL 221
+ + DHL + + G AD + D TQ+++Q ++ R ++ ++
Sbjct: 477 IQGMEDHLG-DMDFKVAGTADGVTALQMDIKIKGVNREILTQALQQARKGR--LFILDKM 533
Query: 222 IDSVEKSGAKYT-----VLYVS---DPVRSVQYPSHQELERFLAES 259
+ ++K A+ + ++ +S D +R V P + + + +AE+
Sbjct: 534 LAVIDKPAAEMSPYAPRIITMSIDPDKIREVIGPGGKVINKIIAET 579
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,532,784
Number of Sequences: 539616
Number of extensions: 4275534
Number of successful extensions: 12189
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 12187
Number of HSP's gapped (non-prelim): 23
length of query: 317
length of database: 191,569,459
effective HSP length: 117
effective length of query: 200
effective length of database: 128,434,387
effective search space: 25686877400
effective search space used: 25686877400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)