Query 021124
Match_columns 317
No_of_seqs 142 out of 170
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 13:05:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021124.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021124hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gso_A Phosphodiesterase-nucle 23.8 48 0.0016 30.5 3.3 53 189-241 157-220 (393)
2 3ldh_A Lactate dehydrogenase; 19.1 82 0.0028 29.2 3.7 51 190-240 88-140 (330)
3 1auk_A Arylsulfatase A; cerebr 18.6 79 0.0027 30.3 3.6 32 211-242 233-266 (489)
4 2vqr_A Putative sulfatase; pho 17.4 86 0.0029 30.4 3.6 29 214-242 326-356 (543)
5 2w5v_A Alkaline phosphatase; p 17.4 83 0.0028 29.0 3.4 30 210-240 273-302 (375)
6 2k1k_A Ephrin type-A receptor 15.9 2.1E+02 0.0071 17.9 3.9 24 279-302 10-33 (38)
7 1mld_A Malate dehydrogenase; o 15.9 79 0.0027 28.7 2.7 52 190-241 67-120 (314)
8 1fsu_A N-acetylgalactosamine-4 15.7 1E+02 0.0035 29.4 3.6 32 211-242 229-262 (492)
9 2x0j_A Malate dehydrogenase; o 15.6 53 0.0018 29.9 1.5 51 190-240 68-120 (294)
10 3b5q_A Putative sulfatase YIDJ 15.5 99 0.0034 29.5 3.5 30 213-242 256-287 (482)
No 1
>2gso_A Phosphodiesterase-nucleotide pyrophosphatase; alpha beta, NPP, hydrolase; 1.30A {Xanthomonas axonopodis PV} PDB: 2gsn_A 2gsu_A* 2rh6_A*
Probab=23.85 E-value=48 Score=30.55 Aligned_cols=53 Identities=19% Similarity=0.355 Sum_probs=35.6
Q ss_pred CCCceEEEEecCCC---------CCCCCCCCCCcchHHHHHHHHHhhhcC--CceEEEEEecCC
Q 021124 189 KGQADLIVVCYGDT---------QSMKQPKQPRPESEVISELIDSVEKSG--AKYTVLYVSDPV 241 (317)
Q Consensus 189 ~~~~~vi~v~~~~~---------~~~~r~~~l~~nD~~L~~vl~~l~~~~--~~YTViYtS~p~ 241 (317)
..+|.++.+....+ ...+-.+.+..-|+.|+++++.|++.+ .+..||||||-.
T Consensus 157 ~~~P~fl~~~~~~~d~~~h~~g~~~~~y~~~i~~~D~~ig~ll~~L~~~g~~~nT~vi~tSDHG 220 (393)
T 2gso_A 157 AQRNRLVTLYFEHVDEAGHDHGPESRQYADAVRAVDAAIGRLLAGMQRDGTRARTNIIVVSDHG 220 (393)
T ss_dssp GGCEEEEEEEECHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHTCGGGEEEEEECSCC
T ss_pred CCCCeEEEEecCCCCccccccCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCC
Confidence 35788888862111 111112245667999999999998766 678889999874
No 2
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Probab=19.08 E-value=82 Score=29.19 Aligned_cols=51 Identities=8% Similarity=0.102 Sum_probs=42.6
Q ss_pred CCceEEEEec--CCCCCCCCCCCCCcchHHHHHHHHHhhhcCCceEEEEEecC
Q 021124 190 GQADLIVVCY--GDTQSMKQPKQPRPESEVISELIDSVEKSGAKYTVLYVSDP 240 (317)
Q Consensus 190 ~~~~vi~v~~--~~~~~~~r~~~l~~nD~~L~~vl~~l~~~~~~YTViYtS~p 240 (317)
...|+++++. +...++.|.+.+..|-++++++...+.+..++=.++-+|.|
T Consensus 88 ~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNP 140 (330)
T 3ldh_A 88 AGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPEL 140 (330)
T ss_dssp SSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCc
Confidence 4689999983 33356789999999999999999999888888888888999
No 3
>1auk_A Arylsulfatase A; cerebroside-3-sulfate hydrolysis, lysosomal enzyme, hydrolas; HET: NDG NAG; 2.10A {Homo sapiens} SCOP: c.76.1.2 PDB: 1n2k_A* 1n2l_A* 1e1z_P* 1e2s_P* 1e3c_P* 1e33_P*
Probab=18.55 E-value=79 Score=30.34 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=24.6
Q ss_pred CCcchHHHHHHHHHhhhcC--CceEEEEEecCCC
Q 021124 211 PRPESEVISELIDSVEKSG--AKYTVLYVSDPVR 242 (317)
Q Consensus 211 l~~nD~~L~~vl~~l~~~~--~~YTViYtS~p~~ 242 (317)
+..-|..|+++++.|++.+ .+-.||||||-..
T Consensus 233 v~~~D~~vG~ll~~L~~~gl~dnTiViftSDhG~ 266 (489)
T 1auk_A 233 LMELDAAVGTLMTAIGDLGLLEETLVIFTADNGP 266 (489)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGEEEEEEESSCC
T ss_pred HHHHHHHHHHHHHHHHHcCCcCCeEEEEeCCCCc
Confidence 4456899999999999766 4567788888654
No 4
>2vqr_A Putative sulfatase; phosphonate monoester hydrolase, hydrolase, plasmid, formylglycine, phosphodiesterase; 1.42A {Rhizobium leguminosarum BV} PDB: 2w8s_A
Probab=17.41 E-value=86 Score=30.35 Aligned_cols=29 Identities=10% Similarity=0.358 Sum_probs=22.7
Q ss_pred chHHHHHHHHHhhhcC--CceEEEEEecCCC
Q 021124 214 ESEVISELIDSVEKSG--AKYTVLYVSDPVR 242 (317)
Q Consensus 214 nD~~L~~vl~~l~~~~--~~YTViYtS~p~~ 242 (317)
-|+.|+++++.|++.+ .+-.||||||-..
T Consensus 326 ~D~~iG~ll~~L~~~gl~dnTiIiftSDHG~ 356 (543)
T 2vqr_A 326 VDDCLGRVFSYLDETGQWDDTLIIFTSDHGE 356 (543)
T ss_dssp HHHHHHHHHHHHHHTTCGGGEEEEEEESCCC
T ss_pred HHHHHHHHHHHHHhcCCcCCeEEEEECcCCc
Confidence 4788999999999765 4567778888754
No 5
>2w5v_A Alkaline phosphatase; psychrophiles, cold adaptation, hydrolase; HET: SEP; 1.78A {Antarctic bacterium TAB5} PDB: 2w5w_A* 2w5x_A* 2iuc_A 2iuc_B
Probab=17.39 E-value=83 Score=29.03 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=24.5
Q ss_pred CCCcchHHHHHHHHHhhhcCCceEEEEEecC
Q 021124 210 QPRPESEVISELIDSVEKSGAKYTVLYVSDP 240 (317)
Q Consensus 210 ~l~~nD~~L~~vl~~l~~~~~~YTViYtS~p 240 (317)
.+..-|+.|+++++.|++.+ +-.||||||-
T Consensus 273 ~v~~~D~~vG~il~~L~~~g-nTlviftsDh 302 (375)
T 2w5v_A 273 EINDFDDAIGTALAFAKKDG-NTLVIVTSDH 302 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-SEEEEEECSC
T ss_pred HHHHHHHHHHHHHHHHhhCC-CEEEEEECcC
Confidence 45566999999999999766 7777888887
No 6
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=15.91 E-value=2.1e+02 Score=17.86 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 021124 279 SSLFEGILVGIVLLLILVSGLCCM 302 (317)
Q Consensus 279 ~~i~~gl~v~~~ll~il~~g~~~l 302 (317)
.|-..|+.++.+.-..+..++.+.
T Consensus 10 ~GaIAGiVvG~v~gv~li~~l~~~ 33 (38)
T 2k1k_A 10 GGEIVAVIFGLLLGAALLLGILVF 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeeeehHHHHHHHHHHHHHHH
Confidence 566677777776665555555544
No 7
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Probab=15.89 E-value=79 Score=28.70 Aligned_cols=52 Identities=13% Similarity=0.247 Sum_probs=39.6
Q ss_pred CCceEEEEec--CCCCCCCCCCCCCcchHHHHHHHHHhhhcCCceEEEEEecCC
Q 021124 190 GQADLIVVCY--GDTQSMKQPKQPRPESEVISELIDSVEKSGAKYTVLYVSDPV 241 (317)
Q Consensus 190 ~~~~vi~v~~--~~~~~~~r~~~l~~nD~~L~~vl~~l~~~~~~YTViYtS~p~ 241 (317)
...|+++++. +......|.+.+..|-.++.++...+.+..++-.+|++|.|.
T Consensus 67 ~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNPv 120 (314)
T 1mld_A 67 KGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPV 120 (314)
T ss_dssp TTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCH
T ss_pred CCCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCc
Confidence 4689999983 222345677666777788999999888878888888899994
No 8
>1fsu_A N-acetylgalactosamine-4-sulfatase; glycosaminoglycan degradation, hydrolase, glycopr lysosome; HET: ALS NAG; 2.50A {Homo sapiens} SCOP: c.76.1.2
Probab=15.71 E-value=1e+02 Score=29.44 Aligned_cols=32 Identities=13% Similarity=0.239 Sum_probs=24.2
Q ss_pred CCcchHHHHHHHHHhhhcC--CceEEEEEecCCC
Q 021124 211 PRPESEVISELIDSVEKSG--AKYTVLYVSDPVR 242 (317)
Q Consensus 211 l~~nD~~L~~vl~~l~~~~--~~YTViYtS~p~~ 242 (317)
+..-|..|+++++.|++.+ .+-.||||||-..
T Consensus 229 v~~~D~~vG~ll~~L~~~g~~dnTiviftSDhG~ 262 (492)
T 1fsu_A 229 VSLMDEAVGNVTAALKSSGLWNNTVFIFSTDNGG 262 (492)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGEEEEEEESSCC
T ss_pred HHHHHHHHHHHHHHHHHcCCccCEEEEEECCCCC
Confidence 3445899999999999765 4567788888754
No 9
>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*
Probab=15.61 E-value=53 Score=29.90 Aligned_cols=51 Identities=16% Similarity=0.353 Sum_probs=43.0
Q ss_pred CCceEEEEec--CCCCCCCCCCCCCcchHHHHHHHHHhhhcCCceEEEEEecC
Q 021124 190 GQADLIVVCY--GDTQSMKQPKQPRPESEVISELIDSVEKSGAKYTVLYVSDP 240 (317)
Q Consensus 190 ~~~~vi~v~~--~~~~~~~r~~~l~~nD~~L~~vl~~l~~~~~~YTViYtS~p 240 (317)
...+|+++.. |....+.|.+-+..|-++++++...+.+.+|+=.++.+|.|
T Consensus 68 ~~aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsNP 120 (294)
T 2x0j_A 68 KGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP 120 (294)
T ss_dssp TTCSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSS
T ss_pred CCCCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecCc
Confidence 4589999993 22345789999999999999999999988999889999999
No 10
>3b5q_A Putative sulfatase YIDJ; NP_810509.1, structural genomics, joint center for structural genomics, JCSG; HET: EPE; 2.40A {Bacteroides thetaiotaomicron vpi-5482}
Probab=15.52 E-value=99 Score=29.55 Aligned_cols=30 Identities=10% Similarity=0.131 Sum_probs=22.8
Q ss_pred cchHHHHHHHHHhhhcC--CceEEEEEecCCC
Q 021124 213 PESEVISELIDSVEKSG--AKYTVLYVSDPVR 242 (317)
Q Consensus 213 ~nD~~L~~vl~~l~~~~--~~YTViYtS~p~~ 242 (317)
.-|..|+++++.|++.+ .+-.||||||-..
T Consensus 256 ~~D~~vG~ll~~L~~~g~~dnTiVIftSDHG~ 287 (482)
T 3b5q_A 256 MVSKQVDSVLKALYSTPAGRNTIVVIMADHGD 287 (482)
T ss_dssp HHHHHHHHHHHHHTTSTTGGGEEEEEEESCCC
T ss_pred HHHHHHHHHHHHHHHcCCcCCeEEEEECCCCc
Confidence 34788999999999765 4567788888754
Done!