Query 021126
Match_columns 317
No_of_seqs 238 out of 1457
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 07:48:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0128 AroA 5-enolpyruvylshik 100.0 4E-41 8.7E-46 325.0 26.3 219 86-316 11-229 (428)
2 PLN02338 3-phosphoshikimate 1- 100.0 7.9E-37 1.7E-41 301.1 29.2 237 80-316 4-240 (443)
3 PF00275 EPSP_synthase: EPSP s 100.0 1.8E-35 4E-40 289.6 22.2 222 82-315 1-224 (419)
4 KOG0692 Pentafunctional AROM p 100.0 7.3E-36 1.6E-40 284.8 16.8 309 2-317 14-336 (595)
5 PRK11861 bifunctional prephena 100.0 2E-34 4.4E-39 297.1 28.6 231 75-316 238-472 (673)
6 PRK11860 bifunctional 3-phosph 100.0 7.6E-33 1.6E-37 284.8 29.2 229 77-316 4-234 (661)
7 cd01554 EPT-like Enol pyruvate 100.0 4.7E-32 1E-36 264.0 27.7 214 88-316 1-215 (408)
8 TIGR01356 aroA 3-phosphoshikim 100.0 3.7E-32 8.1E-37 264.9 26.6 212 90-316 1-213 (409)
9 PRK02427 3-phosphoshikimate 1- 100.0 7E-31 1.5E-35 257.8 27.2 222 81-316 6-231 (435)
10 cd01556 EPSP_synthase EPSP syn 100.0 1E-30 2.3E-35 254.0 27.6 216 88-316 1-216 (409)
11 PRK14806 bifunctional cyclohex 100.0 6.9E-30 1.5E-34 266.2 28.0 226 74-316 298-524 (735)
12 PRK09369 UDP-N-acetylglucosami 100.0 1.4E-29 2.9E-34 247.8 25.8 222 77-316 1-223 (417)
13 COG0766 MurA UDP-N-acetylgluco 100.0 6.7E-28 1.4E-32 227.4 24.5 222 77-316 1-223 (421)
14 PRK12830 UDP-N-acetylglucosami 100.0 8.4E-28 1.8E-32 235.0 25.9 219 77-316 1-221 (417)
15 TIGR01072 murA UDP-N-acetylglu 100.0 5.8E-27 1.3E-31 228.8 26.2 221 77-316 1-222 (416)
16 cd01555 UdpNAET UDP-N-acetylgl 100.0 3.2E-26 6.9E-31 222.5 25.1 211 88-316 1-212 (400)
17 COG0128 AroA 5-enolpyruvylshik 99.9 6E-25 1.3E-29 212.7 24.8 239 57-316 127-373 (428)
18 PLN02338 3-phosphoshikimate 1- 99.9 3.7E-20 8E-25 182.7 26.7 239 59-314 136-389 (443)
19 PF00275 EPSP_synthase: EPSP s 99.9 3E-21 6.4E-26 189.3 17.2 238 58-314 125-368 (419)
20 cd01556 EPSP_synthase EPSP syn 99.9 9.2E-20 2E-24 177.3 26.2 234 59-314 116-356 (409)
21 PRK11860 bifunctional 3-phosph 99.9 8E-20 1.7E-24 188.5 26.6 237 59-313 130-377 (661)
22 cd01554 EPT-like Enol pyruvate 99.9 1.5E-19 3.3E-24 176.1 26.4 237 59-316 117-358 (408)
23 PRK11861 bifunctional prephena 99.9 1.2E-19 2.5E-24 187.7 26.4 240 59-316 366-620 (673)
24 TIGR01356 aroA 3-phosphoshikim 99.9 5.9E-20 1.3E-24 179.1 21.3 201 78-298 203-409 (409)
25 COG0766 MurA UDP-N-acetylgluco 99.8 1E-18 2.2E-23 165.5 22.6 231 58-317 127-363 (421)
26 PRK12830 UDP-N-acetylglucosami 99.8 3E-18 6.6E-23 167.6 22.5 215 60-303 196-416 (417)
27 PRK02427 3-phosphoshikimate 1- 99.8 4.2E-18 9.1E-23 167.3 21.4 220 60-300 203-435 (435)
28 PRK09369 UDP-N-acetylglucosami 99.8 1.7E-17 3.7E-22 162.5 23.9 199 76-300 211-415 (417)
29 PRK14806 bifunctional cyclohex 99.8 3.8E-17 8.2E-22 170.7 25.9 237 59-314 429-675 (735)
30 TIGR01072 murA UDP-N-acetylglu 99.8 1.8E-16 3.9E-21 154.9 27.4 228 60-315 128-360 (416)
31 cd01555 UdpNAET UDP-N-acetylgl 99.8 2.7E-16 5.7E-21 153.0 24.4 213 78-316 59-280 (400)
32 cd01553 EPT_RTPC-like This dom 99.3 8.7E-11 1.9E-15 105.1 16.8 177 95-294 7-210 (211)
33 KOG0692 Pentafunctional AROM p 99.3 6.1E-11 1.3E-15 114.7 12.6 236 61-314 232-488 (595)
34 cd01553 EPT_RTPC-like This dom 99.1 3.3E-09 7.2E-14 94.9 14.9 137 173-315 8-170 (211)
35 PF01137 RTC: RNA 3'-terminal 96.9 0.05 1.1E-06 49.4 15.6 186 103-302 15-227 (228)
36 COG0430 RCL1 RNA 3'-terminal p 96.3 0.042 9.1E-07 52.2 10.5 119 179-302 17-151 (341)
37 cd00295 RNA_Cyclase RNA 3' pho 95.7 0.22 4.7E-06 47.9 12.7 121 176-300 10-145 (338)
38 TIGR03399 RNA_3prim_cycl RNA 3 95.6 0.31 6.7E-06 46.6 13.6 123 176-302 12-149 (326)
39 cd00874 RNA_Cyclase_Class_II R 95.4 0.42 9E-06 45.7 13.7 123 176-302 10-147 (326)
40 PRK04204 RNA 3'-terminal-phosp 95.4 0.4 8.6E-06 46.2 13.6 123 176-302 14-151 (343)
41 COG0430 RCL1 RNA 3'-terminal p 95.1 0.81 1.7E-05 43.7 14.1 115 103-224 19-150 (341)
42 cd00875 RNA_Cyclase_Class_I RN 94.9 0.63 1.4E-05 44.8 13.3 119 176-298 10-143 (341)
43 TIGR03400 18S_RNA_Rcl1p 18S rR 94.8 1.8 3.9E-05 42.0 16.1 115 103-224 11-145 (360)
44 TIGR03400 18S_RNA_Rcl1p 18S rR 94.7 1.1 2.4E-05 43.4 14.4 122 176-301 6-145 (360)
45 PRK04204 RNA 3'-terminal-phosp 94.6 2.6 5.6E-05 40.7 16.5 117 101-224 17-150 (343)
46 TIGR03399 RNA_3prim_cycl RNA 3 94.2 4.2 9E-05 38.9 17.1 116 102-224 16-148 (326)
47 PF01137 RTC: RNA 3'-terminal 93.7 0.4 8.8E-06 43.5 8.6 122 176-301 10-146 (228)
48 cd00874 RNA_Cyclase_Class_II R 93.6 5.8 0.00013 38.0 16.7 116 102-224 14-146 (326)
49 cd00875 RNA_Cyclase_Class_I RN 93.1 8.3 0.00018 37.1 17.1 113 102-221 14-143 (341)
50 cd00295 RNA_Cyclase RNA 3' pho 92.2 3.7 8.1E-05 39.5 13.4 116 102-224 14-146 (338)
51 KOG3980 RNA 3'-terminal phosph 82.9 46 0.001 32.0 14.8 146 91-250 6-168 (361)
52 KOG3980 RNA 3'-terminal phosph 74.4 38 0.00083 32.5 10.4 120 176-300 12-147 (361)
53 COG0602 NrdG Organic radical a 44.6 39 0.00084 30.2 4.6 35 192-226 72-106 (212)
54 COG1925 FruB Phosphotransferas 35.5 2E+02 0.0044 22.0 8.3 80 193-294 4-83 (88)
55 PHA02627 hypothetical protein; 32.3 34 0.00074 24.4 1.8 24 122-145 33-56 (73)
56 PF06076 Orthopox_F14: Orthopo 31.1 35 0.00076 24.3 1.7 24 122-145 33-56 (73)
57 PRK10850 PTS system phosphohis 29.7 2.5E+02 0.0053 21.2 8.0 33 193-225 4-36 (85)
58 PHA02780 hypothetical protein; 28.6 42 0.00091 24.0 1.7 23 123-145 34-56 (73)
59 COG0547 TrpD Anthranilate phos 26.0 1.9E+02 0.0041 27.9 6.3 145 123-297 53-214 (338)
60 PRK07394 hypothetical protein; 25.4 4.1E+02 0.0089 25.5 8.5 150 123-298 58-226 (342)
61 TIGR01245 trpD anthranilate ph 24.7 2.6E+02 0.0056 26.6 7.0 84 123-224 46-129 (330)
62 PRK13782 phosphocarrier protei 24.2 3E+02 0.0065 20.3 7.5 33 193-225 4-36 (82)
63 TIGR03365 Bsubt_queE 7-cyano-7 23.2 1.2E+02 0.0027 27.3 4.3 35 192-226 73-107 (238)
64 PLN02641 anthranilate phosphor 22.8 2.5E+02 0.0054 27.0 6.5 160 101-298 37-213 (343)
65 cd03027 GRX_DEP Glutaredoxin ( 22.5 1.6E+02 0.0034 20.8 4.0 30 113-142 1-30 (73)
66 PRK14607 bifunctional glutamin 20.9 4E+02 0.0086 27.3 7.9 149 123-298 244-406 (534)
67 COG4004 Uncharacterized protei 20.7 1.6E+02 0.0034 22.9 3.7 22 283-304 12-33 (96)
68 PF13541 ChlI: Subunit ChlI of 20.3 3.2E+02 0.0069 22.1 5.7 93 195-298 12-113 (121)
No 1
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-41 Score=325.01 Aligned_cols=219 Identities=42% Similarity=0.657 Sum_probs=194.6
Q ss_pred CceeeEEEecCCHHHHHHHHHHHhhcCCcEEEeeCCCChhHHHHHHHHHHcCCEEEEcCCccEEEEEcCCCCcccccccC
Q 021126 86 REISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQT 165 (317)
Q Consensus 86 ~~l~G~v~ipgskS~a~r~LlaAaLa~g~t~I~n~~~s~dv~~~l~~L~~lGa~I~~~~~~~~l~V~g~~~~~~~~~~~~ 165 (317)
++++|++++|||||.++|+|++|+|++|+++|+|++.++|+..|+++|++||++|++.+ ..++|+|.++.+..|
T Consensus 11 ~~l~G~v~~PgSKSishRalilaaLA~g~s~i~~~L~s~D~~~tl~a~~~lG~~i~~~~--~~~~v~g~g~~~~~~---- 84 (428)
T COG0128 11 SPLRGTVRAPGSKSISHRALLLAALAEGESTITNLLDSEDTLATLEALRALGARIEKEG--DTLVVRGTGGELKEP---- 84 (428)
T ss_pred CccceEEECCCCccHHHHHHHHHHHcCCceEEeeeeccHhHHHHHHHHHHhCCeEEccC--CEEEEeCCCCCcCCC----
Confidence 57999999999999999999999999999999999999999999999999999999866 489999986522333
Q ss_pred CceEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCchHHHHHHHHhCCCeEEEeCCCCcccEEEEcCCCCCceE
Q 021126 166 GEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGK 245 (317)
Q Consensus 166 ~~~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~rpi~~l~~~L~~lGa~i~~~~~~~~~Pi~I~g~~~l~g~~ 245 (317)
...+|+|||||++||+++++++. .++.++++|+++|++||+.++++.|++|||+|...++++++|+.|+|+ +.++.
T Consensus 85 -~~~l~~GnSGTt~R~l~glla~~-~~~~~~l~Gd~sl~~RPm~~l~~aLr~~Ga~i~~~~~~~~~Pl~i~G~--~~~~~ 160 (428)
T COG0128 85 -PAVLDCGNSGTTLRLLTGLLALG-SPGETVLTGDESLRKRPMGPLVDALRQLGAKIDGREGEGYLPLTIKGG--LKGGE 160 (428)
T ss_pred -CceeeeccchhHHHHHHHHHhcC-CCCeEEEECChhhhhCCcHHHHHHHHHCCcEEEecCCCCcCCEEEECC--CCCce
Confidence 56899999999999999998752 358999999999999999999999999999999987668999999995 88889
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCCCeEEEEEcccccccchHHHHHHHHHHcCCEEEEeCCcceEEEecCCCC
Q 021126 246 VKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKY 316 (317)
Q Consensus 246 i~l~g~~ssq~~saLllaA~~a~G~~~I~~~~~~~s~~yv~~t~~~L~~lG~~v~~~~d~~~i~I~G~~~~ 316 (317)
++++++.|||++++|+|+|+++.+.+++...+++++++|+++|+++|++||++|+.++ + .|.|+|+|+|
T Consensus 161 i~i~~~~SSq~vsslL~~a~l~~~~~~~~~~~~~~s~~yid~T~~mL~~FGv~v~~~~-~-~~~i~~g~~~ 229 (428)
T COG0128 161 VEIDGPVSSQQVSSLLLLAPLLAEGTTIIVGGVLESKPYIDHTLDMLKAFGVEVENEG-Y-RFYIPGGQKL 229 (428)
T ss_pred EEEeccchHHHHHHHHHHHhhcCCCcEEEecCccCCccHHHHHHHHHHHcCCeEEeec-c-EEEECCCccc
Confidence 9999999999999999999988744443333468899999999999999999999986 3 8999999865
No 2
>PLN02338 3-phosphoshikimate 1-carboxyvinyltransferase
Probab=100.00 E-value=7.9e-37 Score=301.13 Aligned_cols=237 Identities=84% Similarity=1.285 Sum_probs=202.4
Q ss_pred EEEcCCCceeeEEEecCCHHHHHHHHHHHhhcCCcEEEeeCCCChhHHHHHHHHHHcCCEEEEcCCccEEEEEcCCCCcc
Q 021126 80 IVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFP 159 (317)
Q Consensus 80 i~I~~~~~l~G~v~ipgskS~a~r~LlaAaLa~g~t~I~n~~~s~dv~~~l~~L~~lGa~I~~~~~~~~l~V~g~~~~~~ 159 (317)
++|.|.++++|++++|||||.++|+|++|+|++|+++|+|++.++|+..++++|++||++|+++++...++|.|.+..+.
T Consensus 4 ~~v~~~~~~~g~i~~p~sKs~~~r~l~~a~la~~~s~i~~~~~~~D~~~~~~~l~~lG~~~~~~~~~~~~~i~~~~~~~~ 83 (443)
T PLN02338 4 ITLQPIKEISGTVKLPGSKSLSNRILLLAALSEGTTVVDNLLDSDDIRYMLGALKTLGLNVEEDSENNRAVVEGCGGKFP 83 (443)
T ss_pred eEecCCCccceEEEcCCcHHHHHHHHHHHHhCCCCEEEcCCCcCHHHHHHHHHHHHcCCeEEecCCCCeEEEEecCCCcC
Confidence 67777778999999999999999999999999999999999999999999999999999999854435789998764333
Q ss_pred cccccCCceEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCchHHHHHHHHhCCCeEEEeCCCCcccEEEEcCC
Q 021126 160 LAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKG 239 (317)
Q Consensus 160 ~~~~~~~~~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~rpi~~l~~~L~~lGa~i~~~~~~~~~Pi~I~g~~ 239 (317)
.+........+|+||||+++|+|+++++.++.++.+.++|+++|+.||+.++++.|++||++|+..++.+++|++|+|.+
T Consensus 84 ~~~~~~~~~~i~~g~sgt~~r~l~~~~~~~~~~~~~~~~g~~~l~~Rp~~~l~~~L~~lGa~i~~~~~~~~~pi~i~g~~ 163 (443)
T PLN02338 84 VSGDSKEDVELFLGNAGTAMRPLTAAVTAAGGNASYVLDGVPRMRERPIGDLVDGLKQLGADVECTLGTNCPPVRVNAAG 163 (443)
T ss_pred CcccccccceEEcCCcchHHHHHHHHHHhCCCCceEEEECChhhccCCchHHHHHHHHCCCEEEEcCCCCcCCEEEECCC
Confidence 21000002469999999999999998776445689999999999999999999999999999987554567899999864
Q ss_pred CCCceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEcccccccchHHHHHHHHHHcCCEEEEeCCcceEEEecCCCC
Q 021126 240 GLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKY 316 (317)
Q Consensus 240 ~l~g~~i~l~g~~ssq~~saLllaA~~a~G~~~I~~~~~~~s~~yv~~t~~~L~~lG~~v~~~~d~~~i~I~G~~~~ 316 (317)
++++++++++++.|+|++++++++|++++|+++|++.++..++||++.|+++|++||++|+..+++..|.|+|+++|
T Consensus 164 ~l~~~~~~i~g~~Ssq~~sall~aa~~~~g~~~I~~~~~~~s~p~~~~tl~~L~~~G~~i~~~~~~~~i~i~~~~~l 240 (443)
T PLN02338 164 GLPGGKVKLSGSISSQYLTALLMAAPLALGDVEIEIVDKLISVPYVEMTLKLMERFGVSVEHSDSWDRFFIKGGQKY 240 (443)
T ss_pred CCCCceEEECCCCchHHHHHHHHHHhcCCCCcEEEECCCCCCccHHHHHHHHHHHcCCeEEecCCceEEEEcCCccc
Confidence 59999999999999999999999999999999999877677899999999999999999987654346889876434
No 3
>PF00275 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); InterPro: IPR001986 This entry represents the core domain of 3-phosphoshikimate 1-carboxyvinyltransferase and UDP-N-acetylglucosamine 1-carboxyvinyltransferase. It transfers enolpryruvate from phosphoenolpyruvate to 3-phosphoshikimate and UDP-N-acetyl-alpha-D-glucosamine respectively. ; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 3R38_A 3SG1_A 3KR6_A 2Z2C_C 3SWD_K 3ISS_F 1A2N_A 3KQJ_A 1UAE_A 3VCY_D ....
Probab=100.00 E-value=1.8e-35 Score=289.60 Aligned_cols=222 Identities=36% Similarity=0.596 Sum_probs=183.9
Q ss_pred EcCCCceeeEEEecCCHHHHHHHHHHHhhcCCcEEEeeCCCChhHHHHHHHHHHcCCEEEEc-CCccEEEEEcCCCCccc
Q 021126 82 LQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEED-FAMKRAIVEGCGGLFPL 160 (317)
Q Consensus 82 I~~~~~l~G~v~ipgskS~a~r~LlaAaLa~g~t~I~n~~~s~dv~~~l~~L~~lGa~I~~~-~~~~~l~V~g~~~~~~~ 160 (317)
|+++++++|+|++|||||.++|+|++|+|+.|+++|+|++.++|+..|+++|++||++|+++ .+...+++.|....+..
T Consensus 1 v~~~~~l~G~v~~pgsKs~s~rali~AaLa~g~s~i~n~~~~~Dv~~~~~~l~~lG~~i~~~~~~~~~~~~~g~~~~~~~ 80 (419)
T PF00275_consen 1 VEKPSPLSGTVRVPGSKSNSHRALIAAALAEGESRIRNVPDSDDVEATIDALRALGAKISWDEENGDTVIISGNGGSFSS 80 (419)
T ss_dssp EESSSEEEEEEE--B-HHHHHHHHHHHHHGBSEEEEES---SHHHHHHHHHHHHTT-EEEEEECTSEEEEEETTSTTCEE
T ss_pred CCCCCceeEEEEeCCccHHHHHHHHHHHHhcCCCeEEECCchHHHHHHHHhhcccCceeEEeeccceEEEeccccccccc
Confidence 56778999999999999999999999999999999999999999999999999999999774 22357888885444432
Q ss_pred ccccCCceEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCchHHHHHHHHhCCCeEEEeCCCCcccEEEEcCCC
Q 021126 161 AKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGG 240 (317)
Q Consensus 161 ~~~~~~~~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~rpi~~l~~~L~~lGa~i~~~~~~~~~Pi~I~g~~~ 240 (317)
+. ...+++++|++++|||+++++. .++.+.++|+++|+.||++++++.|++||+++++.++++++|++|++
T Consensus 81 ~~----~~~i~~g~Sgt~lr~L~~~~~~--~~~~~~~~G~~~l~~RP~~~l~~~L~~lGa~i~~~~~~~~~pi~i~~--- 151 (419)
T PF00275_consen 81 PE----DIVIDVGNSGTTLRFLLALLAL--APGPVTFTGDCSLGKRPMDPLLDALRQLGARISYLNGEGFLPIRIRG--- 151 (419)
T ss_dssp SH----HHHEEECCGHHHHHHHHHHHSE--ESSEEEEECSBTGGGSTCHHHHHHHHHTTEEEEEETTEEEEEECEEE---
T ss_pred cc----ccceeeccChhHHhHHHHHHhe--eeEEEEEeccchhhhCCHHHHHHHHhhCCCEEEEecCCceEEEEEee---
Confidence 20 3578999999999999998764 46899999999999999999999999999999998765788999998
Q ss_pred CCceEEEeCCCCCHHHHHHHHHHHh-cCCCeEEEEEcccccccchHHHHHHHHHHcCCEEEEeCCcceEEEecCCC
Q 021126 241 LPGGKVKLSGKLSSQYLTALLMAAP-LALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK 315 (317)
Q Consensus 241 l~g~~i~l~g~~ssq~~saLllaA~-~a~G~~~I~~~~~~~s~~yv~~t~~~L~~lG~~v~~~~d~~~i~I~G~~~ 315 (317)
+++..++++++.|||++++++|+|+ ++.|+++|.+ ..++||+++|+++|++||++|+..++++.|.|+|++.
T Consensus 152 ~~~~~~~i~~~~sSq~vs~lll~A~~~a~g~i~i~~---~~s~p~i~~t~~~L~~~G~~i~~~~~~~~~~i~g~~~ 224 (419)
T PF00275_consen 152 LKGGPIEIDGDISSQFVSALLLAAALLARGEITIIN---PASEPYIDMTIDMLKKFGAKIEVDGDENIISIPGGQY 224 (419)
T ss_dssp SSSBEEEEETSSSHHHHHHHHHHHHTTSBSEEEEES---ESSSHHHHHHHHHHHHTT-EEEETTSTTEEEEETTSS
T ss_pred cccCcEEEeccCCCHHHHHHHHHHHHhcCCceEEeC---CCCCCcHHHHHHHHhhceEEEEEccCCcEEEEEeccc
Confidence 5667777788789999999999888 6678777763 6789999999999999999999976656799999876
No 4
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]
Probab=100.00 E-value=7.3e-36 Score=284.83 Aligned_cols=309 Identities=67% Similarity=1.011 Sum_probs=251.6
Q ss_pred cchhhhhcccccccccccCccCC----CCCccceeeeccC----CCCCCCccceeecCccCccccccchhhhcccccccc
Q 021126 2 AQVSKICNGIQNTRVFTNQTKLQ----KPKSVSAISFRSQ----SRGCSSSWGLRYNDRLGNNNTVRTVRASASVGTAEK 73 (317)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (317)
++++. +.|++.+..-.+++|+- .|-|....++... +.+-+..|..+..-....|....++...+.+.++++
T Consensus 14 aeLSr-~lGiLsPtsVarLsKiLvr~~lp~Spdsss~k~~s~~r~~pfsk~~~~~s~d~~n~GS~~r~V~vea~~~taeK 92 (595)
T KOG0692|consen 14 AELSR-YLGILSPTSVARLSKILVRYSLPFSPDSSSPKLRSVPRKVPFSKSWGLKSSDKKNVGSEKRPVKVEASVSTAEK 92 (595)
T ss_pred HHHHH-hhCcCCHHHHhhhhHHHHhcCCCCCCCccchhhhcccccCchHHHHhhhhhhhhccccccccEEEeecchhhhh
Confidence 45555 67888877777777762 2333333333222 233356788887777777788888888888887777
Q ss_pred cCCceeEEEcC-CCceeeEEEecCCHHHHHHHHHHHhhcCCcEEEeeCCCChhHHHHHHHHHHcCCEEE-EcCCccEEEE
Q 021126 74 QSKASEIVLQP-IREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVE-EDFAMKRAIV 151 (317)
Q Consensus 74 ~~~~~~i~I~~-~~~l~G~v~ipgskS~a~r~LlaAaLa~g~t~I~n~~~s~dv~~~l~~L~~lGa~I~-~~~~~~~l~V 151 (317)
.. .+...| ..-+.+.+.+|||||..+|+|++|++.+|.+.++|++.++|+..++.+|+.||..++ |++. ++..+
T Consensus 93 as---~iV~~pdir~i~~~i~~pgSKs~snralllaa~~eg~~~~~n~L~sddt~~m~sal~~L~~~~~~we~~-~~~vv 168 (595)
T KOG0692|consen 93 AS---EIVLQPDIREISGLIKLPGSKSLSNRALLLAALSEGTTVVDNLLNSDDTNYMLSALKTLGLNVETWEEN-NRAVV 168 (595)
T ss_pred cc---hhhcChhHHHhhceeeCCCCchhhhhHHHHHHHhccceeccccccccchhhhhhhHHHhccccceecCC-CEEEE
Confidence 33 566666 345677899999999999999999999999999999999999999999999998765 5554 68999
Q ss_pred EcCCCCcccccccCCceEEEecCchhhHHHHHHHH---HHcCCCcEEEEeCCCCCCCCchHHHHHHHHhCCCeEEEeCCC
Q 021126 152 EGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAV---TAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGT 228 (317)
Q Consensus 152 ~g~~~~~~~~~~~~~~~~i~~g~sgta~r~l~a~l---a~~~~~~~~~i~G~~~l~~rpi~~l~~~L~~lGa~i~~~~~~ 228 (317)
+|+++.+... .....++.+||+++++||+...+ -..++...++|+|..+++.||+++|++.|++.|++|++...+
T Consensus 169 eG~gg~~~~~--~~~~~eLylgnagta~r~lt~~aa~v~~k~~~k~~Vl~g~hrmq~rPi~~LV~~l~q~GadI~~~~~t 246 (595)
T KOG0692|consen 169 EGCGGEFSID--SKSDIELYLGNAGTAMRPLTEFAAAVTAKGGNKSYVLDGVHRMQERPIGDLVVGLKQLGADIECTLGT 246 (595)
T ss_pred EcCCCeeeec--hhhhhhhccCccchhhhhHHHHHHHhhcCCCCceEEEecCcccccCCchHHHHHHHhcCCceEEeccC
Confidence 9998754321 11134789999999999998443 333344458999999999999999999999999999999888
Q ss_pred CcccEEEEcCCCCCceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEcc-cccccchHHHHHHHHHHcCCEEEEeCCcce
Q 021126 229 NCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIID-KLISVPYVEMTLKLMERFGVFVEHSDSWDR 307 (317)
Q Consensus 229 ~~~Pi~I~g~~~l~g~~i~l~g~~ssq~~saLllaA~~a~G~~~I~~~~-~~~s~~yv~~t~~~L~~lG~~v~~~~d~~~ 307 (317)
+++|+.|...+.++|+.|++.|..++||+++++|+|+.+.|+++|...+ ..++.+|+++|.++|.+||++++..+.|+.
T Consensus 247 ~~~p~dv~~~~~~~gg~v~l~g~Vssqy~~~~lm~ap~a~g~vt~~~vdgk~iS~pyv~mt~~lme~fgvn~~~s~~~~~ 326 (595)
T KOG0692|consen 247 NCPPVDVNANGGLPGGKVKLSGSVSSQYLTALLMCAPLALGDVTIEIVDGKLISVPYVEMTLKLMERFGVNVEHSTSWDR 326 (595)
T ss_pred CCCceeeeccCCCcCceeeeeeeehhhHHHHHHHhhhhcCCceEEEeecCccccccchhHHHHHHHHhCcCeEecCCCcc
Confidence 9999999977679999999999999999999999999999999999887 578999999999999999999999988888
Q ss_pred EEEecCCCCC
Q 021126 308 FFIQGGQKYK 317 (317)
Q Consensus 308 i~I~G~~~~~ 317 (317)
+...|+|+|+
T Consensus 327 ~y~i~g~~y~ 336 (595)
T KOG0692|consen 327 FYVIGGQKYK 336 (595)
T ss_pred eEeccCcccC
Confidence 8888888885
No 5
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=100.00 E-value=2e-34 Score=297.10 Aligned_cols=231 Identities=51% Similarity=0.796 Sum_probs=197.2
Q ss_pred CCceeEEEcCCCceeeEEEecCCHHHHHHHHHHHhhcCCcEEEeeCCCChhHHHHHHHHHHcCCEEEEcCCccEEEEEcC
Q 021126 75 SKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGC 154 (317)
Q Consensus 75 ~~~~~i~I~~~~~l~G~v~ipgskS~a~r~LlaAaLa~g~t~I~n~~~s~dv~~~l~~L~~lGa~I~~~~~~~~l~V~g~ 154 (317)
+.|..++|+|.++++|++++|||||.++|+|++|+|++|+++|+|.+.++|+..|+++|++||++|+++++ .++|+|.
T Consensus 238 ~~m~~~~v~~~~~l~G~i~vpgsKS~s~R~l~~AaLa~g~s~i~~~l~s~D~~~~~~aL~~lGa~i~~~~~--~~~I~g~ 315 (673)
T PRK11861 238 SHMEHLDLGPFSHAQGTVRLPGSKSISNRVLLLAALAEGETTVTNLLDSDDTRVMLDALTKLGVKLSRDGG--TCVVGGT 315 (673)
T ss_pred CccceEEEcCCCccceEEEcCCcHHHHHHHHHHHHhcCCCEEEcCCCCCHHHHHHHHHHHHcCCeEEecCC--EEEEEcC
Confidence 34777899988889999999999999999999999999999999999999999999999999999997764 7899886
Q ss_pred CCCcccccccCCceEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCchHHHHHHHHhCCCeEEEeCCCCcccEE
Q 021126 155 GGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVR 234 (317)
Q Consensus 155 ~~~~~~~~~~~~~~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~rpi~~l~~~L~~lGa~i~~~~~~~~~Pi~ 234 (317)
++.+..+ ...+++||||+++||+++++++ ..+.++|+|+++|+.||++++++.|++||+++++.++.+++|++
T Consensus 316 ~~~~~~~-----~~~i~~g~sGt~~r~L~~~~a~--~~g~~~i~G~~~L~~RPi~~ll~~L~~lGa~v~~~~~~~~~p~~ 388 (673)
T PRK11861 316 RGAFTAK-----TADLFLGNAGTAVRPLTAALAV--NGGEYRIHGVPRMHERPIGDLVDGLRQIGARIDYEGNEGFPPLR 388 (673)
T ss_pred CCCcCCC-----CceEecCCcchHHHHHHHHHHc--CCCeEEEECChhhccCChhHHHHHHHHCCCcEEeCCCCCCCCEE
Confidence 5333322 4568999999999999998776 45789999999999999999999999999999876544678999
Q ss_pred EEcCCCC-CceEEEeCCCCCHHHHHHHHHHHhcCC---CeEEEEEcccccccchHHHHHHHHHHcCCEEEEeCCcceEEE
Q 021126 235 INGKGGL-PGGKVKLSGKLSSQYLTALLMAAPLAL---GNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFI 310 (317)
Q Consensus 235 I~g~~~l-~g~~i~l~g~~ssq~~saLllaA~~a~---G~~~I~~~~~~~s~~yv~~t~~~L~~lG~~v~~~~d~~~i~I 310 (317)
|+|. ++ .+..+.++++.|+||+++|+|+|+++. |.++|+..++..+++|+++|+++|++||++|+..++ +.|.|
T Consensus 389 I~g~-~~~~~~~~~v~g~~Ssq~iSalLlaa~~l~a~~~~~~i~~~g~~~S~pyv~~t~~~L~~fG~~V~~~~~-~~i~V 466 (673)
T PRK11861 389 IRPA-TISVDAPIRVRGDVSSQFLTALLMTLPLVKAKDGASVVEIDGELISKPYIEITIKLMARFGVTVERDGW-QRFTV 466 (673)
T ss_pred EECC-CcCCCCeEEeCCCccHHHHHHHHHHhHhhccCCCCEEEEECCccCCcCHHHHHHHHHHHCCCEEEEcCC-cEEEE
Confidence 9986 45 577888999999999999999998653 666677544456899999999999999999987653 47889
Q ss_pred ecCCCC
Q 021126 311 QGGQKY 316 (317)
Q Consensus 311 ~G~~~~ 316 (317)
+++++|
T Consensus 467 ~~~~~~ 472 (673)
T PRK11861 467 PAGVRY 472 (673)
T ss_pred cCCccc
Confidence 876544
No 6
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=100.00 E-value=7.6e-33 Score=284.77 Aligned_cols=229 Identities=52% Similarity=0.843 Sum_probs=197.3
Q ss_pred ceeEEEcCCCceeeEEEecCCHHHHHHHHHHHhhcCCcEEEeeCCCChhHHHHHHHHHHcCCEEEEcCCccEEEEEcCCC
Q 021126 77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGG 156 (317)
Q Consensus 77 ~~~i~I~~~~~l~G~v~ipgskS~a~r~LlaAaLa~g~t~I~n~~~s~dv~~~l~~L~~lGa~I~~~~~~~~l~V~g~~~ 156 (317)
|..+.|.|...+.|++.+|||||.++|+|++|+|++|+++|+|.+.++|+..++++|++||++|+++++ .++|+|.++
T Consensus 4 ~~~~~v~p~~~l~G~i~~pgsKs~s~R~l~lAaLa~g~s~i~~~l~s~D~~~~l~aL~~LGa~i~~~~~--~i~I~g~g~ 81 (661)
T PRK11860 4 TEFLDLPPLLSAGGTVRLPGSKSISNRVLLLAALSEGTTTVRDLLDSDDTRVMLDALRALGCGVEQLGD--TYRITGLGG 81 (661)
T ss_pred ccceeecCCCcccEEEEcCCCHHHHHHHHHHHHhCCCCEEEccCCccHHHHHHHHHHHHcCCEEEecCC--EEEEECCCC
Confidence 334567665678999999999999999999999999999999999999999999999999999998764 799998764
Q ss_pred CcccccccCCceEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCchHHHHHHHHhCCCeEEEeCCCCcccEEEE
Q 021126 157 LFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRIN 236 (317)
Q Consensus 157 ~~~~~~~~~~~~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~rpi~~l~~~L~~lGa~i~~~~~~~~~Pi~I~ 236 (317)
.+..+ ...+++||+||++|+|++++++ .++.++|+|..+++.||+.++++.|++||++++..++++++|++|+
T Consensus 82 ~l~~~-----~~~i~~g~sGtt~r~Ll~~~al--~~g~~~i~g~~~L~~RP~~~Ll~~L~~lGa~v~~~~~~g~~pi~I~ 154 (661)
T PRK11860 82 QFPVK-----QADLFLGNAGTAMRPLTAALAL--LGGEYELSGVPRMHERPIGDLVDALRQLGCDIDYLGNEGFPPLRIG 154 (661)
T ss_pred CcCCC-----CceEEeCCchHHHHHHHHHHHc--CCCeEEEECCchhhcCChHHHHHHHHHCCCEEEEcCCCCcccEEEE
Confidence 33222 4578999999999999987765 4689999999999999999999999999999987654467899999
Q ss_pred cCCCCC-ceEEEeCCCCCHHHHHHHHHHHhcCC-CeEEEEEcccccccchHHHHHHHHHHcCCEEEEeCCcceEEEecCC
Q 021126 237 GKGGLP-GGKVKLSGKLSSQYLTALLMAAPLAL-GNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ 314 (317)
Q Consensus 237 g~~~l~-g~~i~l~g~~ssq~~saLllaA~~a~-G~~~I~~~~~~~s~~yv~~t~~~L~~lG~~v~~~~d~~~i~I~G~~ 314 (317)
++ ++. ++++.++++.|+|++++++|+|+++. ++++|++.++..+.+|+++|+++|++||++|+..+ +..|.|.|++
T Consensus 155 g~-~l~~g~~i~i~gd~SSq~~SalLlAA~~~~g~~~~I~~~~~~~s~~~i~~t~~~L~~~G~~v~~~~-~~~i~v~~~~ 232 (661)
T PRK11860 155 PA-PLRLDAPIRVRGDVSSQFLTALLMALPLVARRDITIEVVGELISKPYIEITLNLLARFGIAVQREG-WQRFTIPAGS 232 (661)
T ss_pred CC-CcCCCceEEEcCCCcHHHHHHHHHHHHhCCCCCeEEEeCCCCCCCCHHHHHHHHHHHCCCEEEecC-CcEEEEcCCc
Confidence 85 786 88999999999999999999999998 56789887666789999999999999999998754 3568898765
Q ss_pred CC
Q 021126 315 KY 316 (317)
Q Consensus 315 ~~ 316 (317)
+|
T Consensus 233 ~l 234 (661)
T PRK11860 233 RY 234 (661)
T ss_pred cc
Confidence 44
No 7
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer.
Probab=100.00 E-value=4.7e-32 Score=264.00 Aligned_cols=214 Identities=29% Similarity=0.441 Sum_probs=185.4
Q ss_pred eeeEEEecCCHHHHHHHHHHHhhcCCcEEEeeCCCChhHHHHHHHHHHcCCEEEEcCCccEEEEEcCCCC-cccccccCC
Q 021126 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGL-FPLAKQQTG 166 (317)
Q Consensus 88 l~G~v~ipgskS~a~r~LlaAaLa~g~t~I~n~~~s~dv~~~l~~L~~lGa~I~~~~~~~~l~V~g~~~~-~~~~~~~~~ 166 (317)
++|++++|||||+++|+|++|++++|+++|.|++.++|+..|+++|++||++|+++++ .++|+|.+.. +..+
T Consensus 1 ~~G~v~i~gskS~~~~~L~~a~la~g~~~i~~~~~~~dv~~t~~~L~~lG~~i~~~~~--~~~v~g~~~~~~~~~----- 73 (408)
T cd01554 1 LHGIIRVPGDKSISHRSLIFASLAEGETKVYNILRGEDVLSTMQVLRDLGVEIEDKDG--VITIQGVGMAGLKAP----- 73 (408)
T ss_pred CceEEEcCCchHHHHHHHHHHHhCCCcEEEeCCCccHHHHHHHHHHHHcCCeEEecCC--EEEEEecCCCCCCCC-----
Confidence 4789999999999999999999999999999999999999999999999999998763 8999986532 2222
Q ss_pred ceEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCchHHHHHHHHhCCCeEEEeCCCCcccEEEEcCCCCCceEE
Q 021126 167 EIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKV 246 (317)
Q Consensus 167 ~~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~rpi~~l~~~L~~lGa~i~~~~~~~~~Pi~I~g~~~l~g~~i 246 (317)
...++++|+++++||++++++. .++++.++|.++++.||+..+++.|++||+++++.++.+.+|+++.+ +++|+.+
T Consensus 74 ~~~~~~g~s~~~~~~l~a~~~~--~~~~v~~~G~~~l~~r~~~~l~~~L~~~Ga~i~~~~~~~~~~~~~~~--~~~~~~i 149 (408)
T cd01554 74 QNALNLGNSGTAIRLISGVLAG--ADFEVELFGDDSLSKRPMDRVTLPLKKMGASISGQEERDLPPLLKGG--KNLGPIH 149 (408)
T ss_pred CceEEccCccHHHHHHHHHHHc--CCCeEEEECCchhhcCChHHHHHHHHHCCCEEEECCCCCcCCEEEec--CCCCCeE
Confidence 3468899999999999988654 45799999999999999999999999999999987654567887764 5899999
Q ss_pred EeCCCCCHHHHHHHHHHHhcCCCeEEEEEcccccccchHHHHHHHHHHcCCEEEEeCCcceEEEecCCCC
Q 021126 247 KLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKY 316 (317)
Q Consensus 247 ~l~g~~ssq~~saLllaA~~a~G~~~I~~~~~~~s~~yv~~t~~~L~~lG~~v~~~~d~~~i~I~G~~~~ 316 (317)
+++++.|+|++++|+++|++++|+++|++. .+++|++.|+++|++||++|+.++ ++.|+|+|+++|
T Consensus 150 ~~~~~~s~q~~~~ll~aa~~~~g~~~i~~~---~~~~~i~~~~~~L~~~G~~i~~~~-~~~i~I~g~~~~ 215 (408)
T cd01554 150 YEDPIASAQVKSALMFAALLAKGETVIIEA---AKEPTINHTENMLQTFGGHISVQG-TKKIVVQGPQKL 215 (408)
T ss_pred EeCCcccHHHHHHHHHHHhcCCCceEEEEe---CCCCCHHHHHHHHHHCCCEEEecC-CcEEEECCCccc
Confidence 999877999999999999999999999975 356789999999999999998764 358999987654
No 8
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. Sequences scoring between the trusted and noise cutoffs include fragmentary and aberrant sequences in which generally well-conserved motifs are missing or altererd, but no example of a protein known to have a different function.
Probab=100.00 E-value=3.7e-32 Score=264.94 Aligned_cols=212 Identities=49% Similarity=0.754 Sum_probs=181.2
Q ss_pred eEEEecCCHHHHHHHHHHHhhcCCcEEEeeCCCChhHHHHHHHHHHcCCEEEEcCCccEEEEEcCCCCcccccccCCceE
Q 021126 90 GTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIE 169 (317)
Q Consensus 90 G~v~ipgskS~a~r~LlaAaLa~g~t~I~n~~~s~dv~~~l~~L~~lGa~I~~~~~~~~l~V~g~~~~~~~~~~~~~~~~ 169 (317)
|++++|||||+++|+|++|+|++|+++|+|++.++|+..++++|++||++|+++++ .++|+|.+.. .+ ...
T Consensus 1 g~i~~p~sKs~~~r~l~~a~la~g~~~i~~~~~~~dv~~~~~~l~~lG~~i~~~~~--~~~i~g~~~~--~~-----~~~ 71 (409)
T TIGR01356 1 GEIRAPGSKSITHRALILAALAEGETRVRNLLRSEDTLATLDALRALGAKIEDGGE--VAVIEGVGGK--EP-----QAE 71 (409)
T ss_pred CeEECCCCHHHHHHHHHHHHhCCCCEEECCCCcCHHHHHHHHHHHHcCCEEEecCC--EEEEEccCCC--CC-----CCE
Confidence 68999999999999999999999999999999999999999999999999998764 8999987642 22 357
Q ss_pred EEecCchhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCchHHHHHHHHhCCCeEEEeCCCCcccEEEEcCCCCCceEEEeC
Q 021126 170 LFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLS 249 (317)
Q Consensus 170 i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~rpi~~l~~~L~~lGa~i~~~~~~~~~Pi~I~g~~~l~g~~i~l~ 249 (317)
+|+++|++++||++++++. .++++.++|+++++.||+..+++.|++||++++..++++++|++|+++ +.++.+.++
T Consensus 72 i~~g~sgt~~r~l~~l~a~--~~~~~~i~g~~~l~~rp~~~l~~~L~~lGa~v~~~~~~~~~p~~i~~~--~~~~~~~i~ 147 (409)
T TIGR01356 72 LDLGNSGTTARLLTGVLAL--ADGEVVLTGDESLRKRPMGRLVDALRQLGAEISSLEGGGSLPLTISGP--LPGGIVYIS 147 (409)
T ss_pred EEecCchHHHHHHHHHHHc--CCCeEEEECCcccccCCcHHHHHHHHHCCCEEEEcCCCCcCCEEEecC--CCCCeEEeC
Confidence 9999999999999998876 468999999999999999999999999999998865446789999974 566888889
Q ss_pred CCCCHHHHHHHHHHHhcCCCeEEEEEcc-cccccchHHHHHHHHHHcCCEEEEeCCcceEEEecCCCC
Q 021126 250 GKLSSQYLTALLMAAPLALGNVEIEIID-KLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKY 316 (317)
Q Consensus 250 g~~ssq~~saLllaA~~a~G~~~I~~~~-~~~s~~yv~~t~~~L~~lG~~v~~~~d~~~i~I~G~~~~ 316 (317)
++.|+|++++|+++|+ ..+...+...+ +..+++|++.+++.|++||++|+..++ ..++|+|++.|
T Consensus 148 ~~~S~q~~salllaa~-~~~~~~~~~~~~~~~~~~~i~~~l~~L~~~G~~i~~~~~-~~i~I~g~~~l 213 (409)
T TIGR01356 148 GSASSQYKSALLLAAP-ALQAVGITIVGEPLKSRPYIEITLDLLGSFGVEVERSDG-RKIVVPGGQKY 213 (409)
T ss_pred CCcchHHHHHHHHhcc-ccCCCeeEEecCCCCCcCHHHHHHHHHHHCCcEEEEcCC-cEEEECCCCcc
Confidence 8889999999999996 44334444333 456889999999999999999998764 47899987544
No 9
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=100.00 E-value=7e-31 Score=257.77 Aligned_cols=222 Identities=41% Similarity=0.652 Sum_probs=185.6
Q ss_pred EEcCCCceeeEEEecCCHHHHHHHHHHHhhcCCcEEEeeCCCChhHHHHHHHHHHcCCEEEEcCCccEEEEEcCCCC-cc
Q 021126 81 VLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGL-FP 159 (317)
Q Consensus 81 ~I~~~~~l~G~v~ipgskS~a~r~LlaAaLa~g~t~I~n~~~s~dv~~~l~~L~~lGa~I~~~~~~~~l~V~g~~~~-~~ 159 (317)
...|+++++|+|++|+|||.++|+|++|+|++|+++|.|++.++|++.++++|++||++|++ + .++|+|.+.. +.
T Consensus 6 ~~~~~~~l~g~i~~p~sks~~~r~l~~a~La~g~s~i~~~~~~~dv~~~~~~L~~lG~~i~~-~---~~~i~~~~~~~~~ 81 (435)
T PRK02427 6 LIIPPSPLSGTVRVPGSKSISHRALLLAALAEGETTITNLLRSEDTLATLNALRALGVEIED-D---EVVVEGVGGGGLK 81 (435)
T ss_pred ccCCCCCccEEEEcCCChHHHHHHHHHHHhcCCCEEEcCCCccHHHHHHHHHHHHcCCeEEc-c---eEEEEccCCCCCC
Confidence 34455689999999999999999999999999999999999999999999999999999987 3 6889886532 23
Q ss_pred cccccCCceEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCchHHHHHHHHhCCCeEEEeCCCCcccEEEEcCC
Q 021126 160 LAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKG 239 (317)
Q Consensus 160 ~~~~~~~~~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~rpi~~l~~~L~~lGa~i~~~~~~~~~Pi~I~g~~ 239 (317)
.| ...+|++++++++||++++++. .++++.|+|+++++.||+..+++.|++||+++++.+ .++.|++|+|.
T Consensus 82 ~~-----~~~i~~~~sg~~~r~l~~laa~--~~~~~~i~g~~~l~~r~~~~l~~~L~~lGa~i~~~~-~~~~~i~i~g~- 152 (435)
T PRK02427 82 EP-----EDVLDCGNSGTTMRLLTGLLAL--QPGEVVLTGDESLRKRPMGRLLDPLRQMGAKIEGRD-EGYLPLTIRGG- 152 (435)
T ss_pred CC-----CCEEEccCchHHHHHHHHHHHh--CCCeEEEECChhhccCChHHHHHHHHHCCCEEEeCC-CCCCCEEEecC-
Confidence 33 4679999999999999997776 467999999999999999999999999999998733 25678999984
Q ss_pred CCCceEEEeCCCCCHHHHHHHHHHHhcCC-CeEEEEEcccccccchHHHHHHHHHHcCCEEE-EeC-CcceEEEecCCCC
Q 021126 240 GLPGGKVKLSGKLSSQYLTALLMAAPLAL-GNVEIEIIDKLISVPYVEMTLKLMERFGVFVE-HSD-SWDRFFIQGGQKY 316 (317)
Q Consensus 240 ~l~g~~i~l~g~~ssq~~saLllaA~~a~-G~~~I~~~~~~~s~~yv~~t~~~L~~lG~~v~-~~~-d~~~i~I~G~~~~ 316 (317)
..+..++++++.++|++++++++|++.. |+++|+..+++.++||++.+++.|++||++|+ ..+ ++..|.|+|++.|
T Consensus 153 -~~~~~~~i~~~~ss~~~~~lll~aa~~~~g~~~i~~~~~~~~rp~i~~~~~~L~~lG~~i~~~~~~~~~~i~I~g~~~l 231 (435)
T PRK02427 153 -KKGGPIEYDGPVSSQFVKSLLLLAPLFAEGDTETTVIEPLPSRPHTEITLRMLRAFGVEVENVEGWGYRRIVIKGGQRL 231 (435)
T ss_pred -CcCccEEecCCcCCHHHHHHHHHHhhccCCCcEEEEcCCCCCCCHHHHHHHHHHHCCCeEEeecCCcccEEEECCCccc
Confidence 3445566676678899998888877765 99888877677899999999999999999998 443 2358889886544
No 10
>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=100.00 E-value=1e-30 Score=254.03 Aligned_cols=216 Identities=44% Similarity=0.694 Sum_probs=186.2
Q ss_pred eeeEEEecCCHHHHHHHHHHHhhcCCcEEEeeCCCChhHHHHHHHHHHcCCEEEEcCCccEEEEEcCCCCcccccccCCc
Q 021126 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGE 167 (317)
Q Consensus 88 l~G~v~ipgskS~a~r~LlaAaLa~g~t~I~n~~~s~dv~~~l~~L~~lGa~I~~~~~~~~l~V~g~~~~~~~~~~~~~~ 167 (317)
++|++++|||||.++|+|++|++++|+++|+|++.++|+..++++|++||++|++++. .++|+|.+.....+ .
T Consensus 1 l~g~i~~~~sKs~~~r~l~~a~l~~g~~~i~~~~~~~dv~~~~~~L~~lG~~i~~~~~--~~~i~g~~~~~~~~-----~ 73 (409)
T cd01556 1 LSGEITVPGSKSISHRALLLAALAEGESRIENLLDSDDTLATLEALRALGAKIEEEGG--TVEIVGGGGLGLPP-----E 73 (409)
T ss_pred CcEEEEcCCchHHHHHHHHHHHhcCCCEEECCCCCCHHHHHHHHHHHHcCCeEEecCC--EEEEEcCCCCCCCC-----C
Confidence 4789999999999999999999999999999999999999999999999999999864 89999875332111 3
Q ss_pred eEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCchHHHHHHHHhCCCeEEEeCCCCcccEEEEcCCCCCceEEE
Q 021126 168 IELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVK 247 (317)
Q Consensus 168 ~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~rpi~~l~~~L~~lGa~i~~~~~~~~~Pi~I~g~~~l~g~~i~ 247 (317)
..++++++++++||++++++. .++++.|+|.++++.||+..+++.|++||++|+..++..+.|+ +.++ ++++.+++
T Consensus 74 ~~i~~~~s~~s~~~l~~l~~~--~~~~~~i~g~~~l~~~~~~~~~~~L~~lGa~i~~~~~~~~~~i-~~~~-~~~~~~~~ 149 (409)
T cd01556 74 AVLDCGNSGTTMRLLTGLLAL--QGGDSVLTGDESLRKRPMGRLVDALRQLGAEIEGREGGGYPPL-IGGG-GLKGGEVE 149 (409)
T ss_pred ceEEcCCchHHHHHHHHHHHc--CCCeEEEECCcccccCChHHHHHHHHHCCCEEEeCCCCCCCCe-eecC-CCCCcEEE
Confidence 478999999999999998765 4789999999999999999999999999999997654335555 5544 68899999
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCeEEEEEcccccccchHHHHHHHHHHcCCEEEEeCCcceEEEecCCCC
Q 021126 248 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKY 316 (317)
Q Consensus 248 l~g~~ssq~~saLllaA~~a~G~~~I~~~~~~~s~~yv~~t~~~L~~lG~~v~~~~d~~~i~I~G~~~~ 316 (317)
++++.|+|++++++++|++++|+++|++. +..+++|++.+++.|++||++|+.++ ++.++|+|+++|
T Consensus 150 i~~~~ss~~~~~ll~aa~l~~g~~~i~~~-~~~~~~~i~~~~~~L~~lGa~i~~~~-~~~i~I~~~~~l 216 (409)
T cd01556 150 IPGAVSSQFKSALLLAAPLAEGPTTIIIG-ELESKPYIDHTERMLRAFGAEVEVDG-YRTITVKGGQKY 216 (409)
T ss_pred eCCCCccHHHHHHHHHHhcCCCceEEEee-CCCCcCHHHHHHHHHHHcCCcEEecC-CcEEEECCCCcc
Confidence 99887899999999999999999999986 56788999999999999999999876 248999876544
No 11
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.97 E-value=6.9e-30 Score=266.22 Aligned_cols=226 Identities=28% Similarity=0.462 Sum_probs=190.8
Q ss_pred cCCceeEEEcCCCceeeEEEecCCHHHHHHHHHHHhhcCCcEEEeeCCCChhHHHHHHHHHHcCCEEEEcCCccEEEEEc
Q 021126 74 QSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEG 153 (317)
Q Consensus 74 ~~~~~~i~I~~~~~l~G~v~ipgskS~a~r~LlaAaLa~g~t~I~n~~~s~dv~~~l~~L~~lGa~I~~~~~~~~l~V~g 153 (317)
-.+++.++|+|+++++|++++|||||+++|+|++|++++|+++|+|++.++|+..|+++|++||++|++.++ +.++|+|
T Consensus 298 ~~~~~~~~i~~~~~~~G~i~ipgskS~~~r~L~~a~la~g~s~i~~~~~~~dv~~ti~~L~~lG~~v~~~~~-~~~~i~g 376 (735)
T PRK14806 298 NANDVSYSVLPGGAVKGTIRVPGDKSISHRSIMLGSLAEGVTEVEGFLEGEDALATLQAFRDMGVVIEGPHN-GRVTIHG 376 (735)
T ss_pred ccCceEEEeccCCcccEEEEcCCChhHHHHHHHHHHhCCCcEEEcCCCccHHHHHHHHHHHHcCCEEEecCC-CEEEEEc
Confidence 345888999997788999999999999999999999999999999999999999999999999999996433 4788987
Q ss_pred CCC-CcccccccCCceEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCchHHHHHHHHhCCCeEEEeCCCCccc
Q 021126 154 CGG-LFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPP 232 (317)
Q Consensus 154 ~~~-~~~~~~~~~~~~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~rpi~~l~~~L~~lGa~i~~~~~~~~~P 232 (317)
.+. .+..+ ...+++++|++++||++++++. ..+.+.++|.++++.||+.++++.|++||++|+..+ ++++|
T Consensus 377 ~~~~~~~~~-----~~~i~~~~s~ts~~ll~a~la~--~~~~v~i~G~~~l~~rp~~~l~~~L~~~Ga~i~~~~-~g~~p 448 (735)
T PRK14806 377 VGLHGLKAP-----PGPLYMGNSGTSMRLLSGLLAA--QSFDSVLTGDASLSKRPMERVAKPLREMGAVIETGE-EGRPP 448 (735)
T ss_pred CCCCCCCCC-----CceeeccCchHHHHHHHHHHhc--CCCeEEEECChhhhhCChHHHHHHHHHCCCEEEcCC-CCcCC
Confidence 542 23222 3468899999999999888653 467899999999999999999999999999998643 36789
Q ss_pred EEEEcCCCCCceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEcccccccchHHHHHHHHHHcCCEEEEeCCcceEEEec
Q 021126 233 VRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQG 312 (317)
Q Consensus 233 i~I~g~~~l~g~~i~l~g~~ssq~~saLllaA~~a~G~~~I~~~~~~~s~~yv~~t~~~L~~lG~~v~~~~d~~~i~I~G 312 (317)
++|+|+..++|+++++++ .|+|++++|+++|++++|+++|++.. .|...|+++|++||++|+..+ +.|.|+|
T Consensus 449 i~i~g~~~l~g~~~~l~~-~ssq~~s~ll~aA~~~~g~~~i~~~~-----~~~~~t~~~L~~~G~~i~~~~--~~i~I~g 520 (735)
T PRK14806 449 LSIRGGQRLKGIHYDLPM-ASAQVKSCLLLAGLYAEGETSVTEPA-----PTRDHTERMLRGFGYPVKVEG--NTISVEG 520 (735)
T ss_pred EEEECCCCccceEEeccC-chHHHHHHHHHHHhccCCceEEecCc-----CCHHHHHHHHHHCCCEEEecC--CEEEECC
Confidence 999985349999999996 58999999999999999999997542 333458899999999999876 5899998
Q ss_pred CCCC
Q 021126 313 GQKY 316 (317)
Q Consensus 313 ~~~~ 316 (317)
+++|
T Consensus 521 ~~~~ 524 (735)
T PRK14806 521 GGKL 524 (735)
T ss_pred Cccc
Confidence 6654
No 12
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
Probab=99.97 E-value=1.4e-29 Score=247.81 Aligned_cols=222 Identities=23% Similarity=0.308 Sum_probs=181.9
Q ss_pred ceeEEEcCCCceeeEEEecCCHHHHHHHHHHHhhcCCcEEEeeCCCChhHHHHHHHHHHcCCEEEEcCCccEEEEEcCCC
Q 021126 77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGG 156 (317)
Q Consensus 77 ~~~i~I~~~~~l~G~v~ipgskS~a~r~LlaAaLa~g~t~I~n~~~s~dv~~~l~~L~~lGa~I~~~~~~~~l~V~g~~~ 156 (317)
|..++|+|++.++|++++|||||+++|+|++|+|++|+++|+|++.++|+..|+++|++||++|++.++ +.++|+|.+.
T Consensus 1 ~~~~~i~~~~~~~G~i~~pgsKS~~~r~l~~a~la~g~s~i~~~~~~~dv~~t~~~l~~lG~~i~~~~~-~~~~i~g~~~ 79 (417)
T PRK09369 1 MDKLVIEGGKPLSGEVTISGAKNAALPILAASLLAEEPVTLTNVPDLSDVRTMIELLRSLGAKVEFDGN-GTVTIDASNI 79 (417)
T ss_pred CCEEEEeCCCCceEEEEccCcHHHHHHHHHHHHhCCCCEEEecCCCcHHHHHHHHHHHHCCCEEEEcCC-CEEEEECCCC
Confidence 456889887778999999999999999999999999999999999999999999999999999998763 4899998653
Q ss_pred C-cccccccCCceEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCchHHHHHHHHhCCCeEEEeCCCCcccEEE
Q 021126 157 L-FPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRI 235 (317)
Q Consensus 157 ~-~~~~~~~~~~~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~rpi~~l~~~L~~lGa~i~~~~~~~~~Pi~I 235 (317)
. ...+ ..+ ...+++++||++++++. .+.+.+.++|+++++.||++.+++.|++||++++..+ +.+|+++
T Consensus 80 ~~~~~~------~~~-~~~s~~s~~~l~~~~~~-~~~~~~~~~g~~~l~~Rp~~~~~~~L~~lGa~v~~~~--~~~~v~~ 149 (417)
T PRK09369 80 NNTEAP------YEL-VKKMRASILVLGPLLAR-FGEAKVSLPGGCAIGARPVDLHLKGLEALGAEIEIEH--GYVEAKA 149 (417)
T ss_pred CCCcCC------HHH-HhhhhhHHHHHHHHhcc-CCceEEEecCCCccCCCchHHHHHHHHHCCCEEEEEC--CEEEEEe
Confidence 2 1111 112 45677777777776543 2245899999999999999999999999999998764 4655554
Q ss_pred EcCCCCCceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEcccccccchHHHHHHHHHHcCCEEEEeCCcceEEEecCCC
Q 021126 236 NGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK 315 (317)
Q Consensus 236 ~g~~~l~g~~i~l~g~~ssq~~saLllaA~~a~G~~~I~~~~~~~s~~yv~~t~~~L~~lG~~v~~~~d~~~i~I~G~~~ 315 (317)
. +++++.++++++ .++|+++.|++++++++|+++|.+. .+++|++.|+++|++||++|+..+ ++.+.|+|++.
T Consensus 150 ~--g~l~~~~~~l~~-~ss~~~~~ll~aa~~~~g~~~i~~~---~~~~~i~~~~~~L~~~G~~v~~~~-~~~i~I~g~~~ 222 (417)
T PRK09369 150 D--GRLKGAHIVLDF-PSVGATENILMAAVLAEGTTVIENA---AREPEIVDLANFLNKMGAKISGAG-TDTITIEGVER 222 (417)
T ss_pred c--CCcccceEeCCC-CCHHHHHHHHHHHHhCCCcEEEeCC---CcCCcHHHHHHHHHHCCCEEEEcC-CceEEEcCCCc
Confidence 3 368899999995 5789999999999999999999853 356899999999999999998643 36899998764
Q ss_pred C
Q 021126 316 Y 316 (317)
Q Consensus 316 ~ 316 (317)
|
T Consensus 223 ~ 223 (417)
T PRK09369 223 L 223 (417)
T ss_pred c
Confidence 4
No 13
>COG0766 MurA UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=6.7e-28 Score=227.40 Aligned_cols=222 Identities=22% Similarity=0.303 Sum_probs=189.2
Q ss_pred ceeEEEcCCCceeeEEEecCCHHHHHHHHHHHhhcCCcEEEeeCCCChhHHHHHHHHHHcCCEEEEcCCccEEEEEcCCC
Q 021126 77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGG 156 (317)
Q Consensus 77 ~~~i~I~~~~~l~G~v~ipgskS~a~r~LlaAaLa~g~t~I~n~~~s~dv~~~l~~L~~lGa~I~~~~~~~~l~V~g~~~ 156 (317)
|+.+.|.|+.+++|+|+|.|.|+++..+|+|+.|++++++|+|+|.-.||..++++|+.||++|+++++ +.+.|+...-
T Consensus 1 M~k~~I~Gg~~L~G~V~IsGAKNaalpii~AtlLa~~~v~L~NvP~l~DV~~~~~ll~~lG~~v~~~~~-~~~~i~~~~i 79 (421)
T COG0766 1 MDKLIIEGGNPLNGEVTISGAKNAALPLLAATLLADEPVTLTNVPDLSDVETMLELLRNLGAKVERDGD-GELEIDAPNI 79 (421)
T ss_pred CCEEEEeCCCccceEEEEeccHhHHHHHHHHHHhCCCcEEEeCCCChHHHHHHHHHHHHcCCEEEEccC-ceEEEccccc
Confidence 678999999999999999999999999999999999999999999999999999999999999999973 5888887653
Q ss_pred -CcccccccCCceEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCchHHHHHHHHhCCCeEEEeCCCCcccEEE
Q 021126 157 -LFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRI 235 (317)
Q Consensus 157 -~~~~~~~~~~~~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~rpi~~l~~~L~~lGa~i~~~~~~~~~Pi~I 235 (317)
.+..||+.. .. . =+.+++++.+.+++++..+.++|+|.++.||++.|++.|++|||+|+.++ ++ +..
T Consensus 80 ~~~~apy~~v--~k-----m-RASi~vlGplLaR~g~a~V~LPGGCaIG~RPvDlHl~gleaLGA~i~~e~--g~--i~a 147 (421)
T COG0766 80 NSTEAPYELV--RK-----M-RASILVLGPLLARFGKAKVSLPGGCAIGARPVDLHLKGLEALGAEIEIEH--GY--IEA 147 (421)
T ss_pred ccccCCHHHH--HH-----H-HhHHHHHHHHHhhcCceEECCCCCccCCCCchhHHHHHHHHcCCEEEEcC--CE--EEE
Confidence 344554321 01 1 12335555556677889999999999999999999999999999999875 56 788
Q ss_pred EcCCCCCceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEcccccccchHHHHHHHHHHcCCEEEEeCCcceEEEecCCC
Q 021126 236 NGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK 315 (317)
Q Consensus 236 ~g~~~l~g~~i~l~g~~ssq~~saLllaA~~a~G~~~I~~~~~~~s~~yv~~t~~~L~~lG~~v~~~~d~~~i~I~G~~~ 315 (317)
+.++.|+|.+|.++ .+|...+-.++|||.+|+|.|+|+|+. ..|.|..++.+|++||++|+..+. ++++|+|.++
T Consensus 148 ~a~~~L~G~~I~ld-~~SVGATenimmAA~lA~G~TvIeNAA---~EPEIvDLa~~Ln~MGA~I~GaGT-~~I~I~GV~~ 222 (421)
T COG0766 148 SAPKGLKGAHIYLD-KVSVGATENIMMAAVLAEGTTVIENAA---REPEIVDLANFLNKMGAKIEGAGT-STITIEGVEK 222 (421)
T ss_pred EccCCccceEEEec-CCcccHHHHHHHHHHhcCCcEEEeecc---cCchHHHHHHHHHHcCCeeEEcCC-CeEEEecccc
Confidence 87755999999999 788899999999999999999999764 357777789999999999999986 7999999876
Q ss_pred C
Q 021126 316 Y 316 (317)
Q Consensus 316 ~ 316 (317)
+
T Consensus 223 L 223 (421)
T COG0766 223 L 223 (421)
T ss_pred c
Confidence 5
No 14
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed
Probab=99.96 E-value=8.4e-28 Score=234.99 Aligned_cols=219 Identities=23% Similarity=0.294 Sum_probs=174.1
Q ss_pred ceeEEEcCCCceeeEEEecCCHHHHHHHHHHHhhcCCcEEEeeCCCChhHHHHHHHHHHcCCEEEEcCCccEEEEEcCCC
Q 021126 77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGG 156 (317)
Q Consensus 77 ~~~i~I~~~~~l~G~v~ipgskS~a~r~LlaAaLa~g~t~I~n~~~s~dv~~~l~~L~~lGa~I~~~~~~~~l~V~g~~~ 156 (317)
|..+.|+|++.+.|++++|||||+++++|++|+|++|+++|+|++.++|++.|+++|++||++|++.+ ++++|+|.+.
T Consensus 1 ~~~~~i~~~~~~~G~v~vpgsKSs~~~ll~aa~la~g~s~i~n~~~~~dv~~t~~~l~~lG~~i~~~~--~~~~I~g~~~ 78 (417)
T PRK12830 1 MEKIVINGGKPLSGEVTISGAKNSAVALIPAAILADGPVTLDGVPDISDVHSLVDILEELGGKVKRDG--DTLEIDPTGI 78 (417)
T ss_pred CceEEEeCCCcceEEEEccCcHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHCCCEEEEcC--CEEEEECCCC
Confidence 45688888778999999999999999999999999999999999999999999999999999998764 4899998531
Q ss_pred -CcccccccCCceEEEecCchhhHHHHHHHHHHcCCCc-EEEEeCCCCCCCCchHHHHHHHHhCCCeEEEeCCCCcccEE
Q 021126 157 -LFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNL-SYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVR 234 (317)
Q Consensus 157 -~~~~~~~~~~~~~i~~g~sgta~r~l~a~la~~~~~~-~~~i~G~~~l~~rpi~~l~~~L~~lGa~i~~~~~~~~~Pi~ 234 (317)
..+.+ ..+..+...++||++++ +.. .++ .+.++|+++++.||+.++++.|++||++++..+ +. +.
T Consensus 79 ~~~~~~-------~~~~~~~~as~~~~~~~-~~~-~~~~~v~~~g~~~l~~Rp~~~~~~~L~~lGa~v~~~~--~~--i~ 145 (417)
T PRK12830 79 QSMPLP-------NGKVKSLRASYYFMGAL-LGR-FKKAVVGLPGGCDLGPRPIDQHIKGFEALGAEVTNEG--GA--IY 145 (417)
T ss_pred CCCCCC-------HHHHhhchhHHHHHHHH-hcC-CCceEEEecCCCccCCCcCHHHHHHHHHCCCEEEEcC--CE--EE
Confidence 11111 11112233344455443 322 234 799999999999999999999999999998754 33 88
Q ss_pred EEcCCCCCceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEcccccccchHHHHHHHHHHcCCEEEEeCCcceEEEecCC
Q 021126 235 INGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ 314 (317)
Q Consensus 235 I~g~~~l~g~~i~l~g~~ssq~~saLllaA~~a~G~~~I~~~~~~~s~~yv~~t~~~L~~lG~~v~~~~d~~~i~I~G~~ 314 (317)
|++. .+++.+++++. .++++++.|++++++++|+++|++ ..+++|++.++++|++||++|+..+ ++.|.|+|++
T Consensus 146 v~~~-~l~~~~~~ld~-~ss~~~~~ll~a~~~~~g~~~i~~---~~~~~~i~~l~~~L~~~G~~i~~~~-~~~i~I~g~~ 219 (417)
T PRK12830 146 LKAD-ELKGAHIYLDV-VSVGATINIMLAAVKAKGRTVIEN---AAKEPEIIDVATLLNNMGANIKGAG-TDVIRIEGVD 219 (417)
T ss_pred EEeC-CccCCEEECCC-CCHHHHHHHHHHHHcCCCeEEEcc---CCcCCcHHHHHHHHHHCCCEEEEcC-CcEEEEccCC
Confidence 8885 68899988885 477888889999999999998874 2457799999999999999998543 3689999976
Q ss_pred CC
Q 021126 315 KY 316 (317)
Q Consensus 315 ~~ 316 (317)
+|
T Consensus 220 ~~ 221 (417)
T PRK12830 220 EL 221 (417)
T ss_pred cc
Confidence 54
No 15
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
Probab=99.96 E-value=5.8e-27 Score=228.78 Aligned_cols=221 Identities=23% Similarity=0.258 Sum_probs=175.2
Q ss_pred ceeEEEcCCCceeeEEEecCCHHHHHHHHHHHhhcCCcEEEeeCCCChhHHHHHHHHHHcCCEEEEcCCccEEEEEcCCC
Q 021126 77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGG 156 (317)
Q Consensus 77 ~~~i~I~~~~~l~G~v~ipgskS~a~r~LlaAaLa~g~t~I~n~~~s~dv~~~l~~L~~lGa~I~~~~~~~~l~V~g~~~ 156 (317)
|..++|.|++.++|++++|||||+++|+|++|+|++|+++|+|.+.++|++.|+++|++||++|++.++ +++|+|.+.
T Consensus 1 ~~~~~v~~~~~~~g~i~~p~skS~~~r~l~~a~la~g~~~i~~~~~~~d~~~~~~~l~~lG~~i~~~~~--~~~i~g~~~ 78 (416)
T TIGR01072 1 MDKLVVEGGKPLSGEVTISGAKNAALPIIAATLLTDEPVTLTNVPDLSDVKTTLDLLRNLGARVERDNN--TLEINTPNI 78 (416)
T ss_pred CceEEEeCCCCcEEEEEcCCcHHHHHHHHHHHHhCCCcEEEeCCCchHHHHHHHHHHHHCCCEEEEcCC--EEEEECCCC
Confidence 466888887788999999999999999999999999999999999999999999999999999998764 799998652
Q ss_pred -CcccccccCCceEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCchHHHHHHHHhCCCeEEEeCCCCcccEEE
Q 021126 157 -LFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRI 235 (317)
Q Consensus 157 -~~~~~~~~~~~~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~rpi~~l~~~L~~lGa~i~~~~~~~~~Pi~I 235 (317)
.+..| ....+.. .+++++++++++ .+...++.++|+++++.||++.+++.|++||++++..+ +++|+++
T Consensus 79 ~~~~~~-----~~~s~~~--ra~~~~~~~~la-~~~~~~~~~~g~~~~~~rp~~~~i~~L~~~G~~v~~~~--~~~~v~~ 148 (416)
T TIGR01072 79 NSTEAP-----YELVRKM--RASILVLGPLLA-RFGKAVVSLPGGCAIGARPVDLHLKGLKALGAEIVIED--GYVYASA 148 (416)
T ss_pred CCCCCC-----HHHHhhh--hHHHHHHHHHhc-cCCceEEEecCCCccCCCCHHHHHHHHHHCCCEEEEEC--CEEEEEe
Confidence 12211 1111111 134445444433 22234889999999999999999999999999998765 4655554
Q ss_pred EcCCCCCceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEcccccccchHHHHHHHHHHcCCEEEEeCCcceEEEecCCC
Q 021126 236 NGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK 315 (317)
Q Consensus 236 ~g~~~l~g~~i~l~g~~ssq~~saLllaA~~a~G~~~I~~~~~~~s~~yv~~t~~~L~~lG~~v~~~~d~~~i~I~G~~~ 315 (317)
. +++++.++++++ .++|+++.|++++++++|+++|++. .+++|++.++++|++||++++..++ +.+.|.|.++
T Consensus 149 ~--~~l~~~~~~l~~-~~s~~~~~ll~aa~~~~~~~~i~~~---~~~~~i~~~~~~L~~~G~~v~~~~~-~~l~I~g~~~ 221 (416)
T TIGR01072 149 K--GRLVGAHIVLDK-VSVGATENIIMAAVLAEGTTVIENA---AREPEIVDLCEFLNKMGAKITGAGS-NTITIEGVEK 221 (416)
T ss_pred c--CcceeeEEecCC-CCHHHHHHHHHHHHhCCCcEEEecC---CcCcCHHHHHHHHHHCCCEEEEcCC-CEEEEeCCCc
Confidence 3 358899999996 5789999999999999999999753 4568899999999999999985333 5899998764
Q ss_pred C
Q 021126 316 Y 316 (317)
Q Consensus 316 ~ 316 (317)
|
T Consensus 222 ~ 222 (416)
T TIGR01072 222 L 222 (416)
T ss_pred c
Confidence 4
No 16
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This enzyme is of interest as a potential target for anti-bacterial agents. The only other known enolpyruvyl transferase is the related 5-enolpyruvylshikimate-3-phosphate synthase.
Probab=99.95 E-value=3.2e-26 Score=222.48 Aligned_cols=211 Identities=22% Similarity=0.294 Sum_probs=170.4
Q ss_pred eeeEEEecCCHHHHHHHHHHHhhcCCcEEEeeCCCChhHHHHHHHHHHcCCEEEEcCCccEEEEEcCCCC-cccccccCC
Q 021126 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGL-FPLAKQQTG 166 (317)
Q Consensus 88 l~G~v~ipgskS~a~r~LlaAaLa~g~t~I~n~~~s~dv~~~l~~L~~lGa~I~~~~~~~~l~V~g~~~~-~~~~~~~~~ 166 (317)
++|++++|||||+++|+|++|+|++|+++|+|++.++|+..++++|++||++|++.+. ..++|+|.+.. +..+
T Consensus 1 ~~g~i~~p~sKS~~~r~l~~a~la~g~~~i~~~~~~~dv~~~~~~L~~lG~~i~~~~~-~~~~I~~~~~~~~~~~----- 74 (400)
T cd01555 1 LSGEVRISGAKNAALPILAAALLTDEPVTLRNVPDLLDVETMIELLRSLGAKVEFEGE-NTLVIDASNINSTEAP----- 74 (400)
T ss_pred CceEEEcCCcHHHHHHHHHHHHhCCCcEEEECCCChHHHHHHHHHHHHcCCEEEECCC-CEEEEECCCCCCCcCC-----
Confidence 4789999999999999999999999999999999999999999999999999998763 48999885432 2111
Q ss_pred ceEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCchHHHHHHHHhCCCeEEEeCCCCcccEEEEcCCCCCceEE
Q 021126 167 EIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKV 246 (317)
Q Consensus 167 ~~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~rpi~~l~~~L~~lGa~i~~~~~~~~~Pi~I~g~~~l~g~~i 246 (317)
.+ ..+++++++++++++++. ..+..+.++|+++++.||++.+++.|++||++|+..+ ++.|++ +++.+++.++
T Consensus 75 ~~--~~~~~~t~~~~~~~l~~~-~~~~~~~~~g~~~l~~rp~~~~~~~L~~lG~~i~~~~--~~~~v~--~~~~~~~~~~ 147 (400)
T cd01555 75 YE--LVRKMRASILVLGPLLAR-FGEARVSLPGGCAIGARPVDLHLKGLEALGAKIEIED--GYVEAK--AAGRLKGARI 147 (400)
T ss_pred HH--HHhhhhhHHHHHHHHhcC-CCceEEEEcCCCccccCCHHHHHHHHHHCCCEEEEeC--CEEEEe--cCCCccceEE
Confidence 11 135677888887776432 1335788889999999999999999999999998765 354443 3336889999
Q ss_pred EeCCCCCHHHHHHHHHHHhcCCCeEEEEEcccccccchHHHHHHHHHHcCCEEEEeCCcceEEEecCCCC
Q 021126 247 KLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKY 316 (317)
Q Consensus 247 ~l~g~~ssq~~saLllaA~~a~G~~~I~~~~~~~s~~yv~~t~~~L~~lG~~v~~~~d~~~i~I~G~~~~ 316 (317)
.+++ .++++.+.+++++++++|+++|.+. .+++|++.++++|++||++|+..++ +.|.|+|+++|
T Consensus 148 ~i~~-~~~~~~~~ll~aa~~~~g~~~i~~~---~~~~~i~~~~~~L~~~G~~v~~~~~-~~i~I~g~~~l 212 (400)
T cd01555 148 YLDF-PSVGATENIMMAAVLAEGTTVIENA---AREPEIVDLANFLNKMGAKIEGAGT-DTIRIEGVERL 212 (400)
T ss_pred ECCC-CCHHHHHHHHHHHHhCCCeEEEecc---cCCccHHHHHHHHHHCCCEEEEcCC-ceEEEeCCCCC
Confidence 9885 4788999999999999999999853 3567999899999999999987442 58999987654
No 17
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=99.94 E-value=6e-25 Score=212.75 Aligned_cols=239 Identities=25% Similarity=0.308 Sum_probs=186.2
Q ss_pred ccccchhhhcccccccccCCceeEEEcCCCceeeEEEecCCHHHH--HHHHHHHhhcC-CcEEEe--eCCCChhHHHHHH
Q 021126 57 NTVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLS--NRILLLAALSE-GTTVVD--NLLSSEDIHHMLD 131 (317)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~i~I~~~~~l~G~v~ipgskS~a--~r~LlaAaLa~-g~t~I~--n~~~s~dv~~~l~ 131 (317)
-...+||.+++.........-.|++|+|. ...+.+++.++.|+| ..+|++|++.. +.+++. ++....++++|++
T Consensus 127 ~l~~aLr~~Ga~i~~~~~~~~~Pl~i~G~-~~~~~i~i~~~~SSq~vsslL~~a~l~~~~~~~~~~~~~~s~~yid~T~~ 205 (428)
T COG0128 127 PLVDALRQLGAKIDGREGEGYLPLTIKGG-LKGGEVEIDGPVSSQQVSSLLLLAPLLAEGTTIIVGGVLESKPYIDHTLD 205 (428)
T ss_pred HHHHHHHHCCcEEEecCCCCcCCEEEECC-CCCceEEEeccchHHHHHHHHHHHhhcCCCcEEEecCccCCccHHHHHHH
Confidence 46779999998875555566789999997 455677777776666 57888888865 555443 4444569999999
Q ss_pred HHHHcCCEEEEcCCccEEEEEcCCCCcccccccCCceEEEecCchhhHHHHHHHHHHcCCCcE-EEEeCCCCCCCCchHH
Q 021126 132 ALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLS-YILDGVPRMRERPIGD 210 (317)
Q Consensus 132 ~L~~lGa~I~~~~~~~~l~V~g~~~~~~~~~~~~~~~~i~~g~sgta~r~l~a~la~~~~~~~-~~i~G~~~l~~rpi~~ 210 (317)
+|++||++|+.++. .++|+|.+...+ ..+...||.++++||++|++.. .+.+ +.+.+... .+....
T Consensus 206 mL~~FGv~v~~~~~--~~~i~~g~~~~~-------~~~~VpgD~SSAafflaAaai~--~~~~~i~~~~v~~--~~~~~~ 272 (428)
T COG0128 206 MLKAFGVEVENEGY--RFYIPGGQKLTP-------GDYDVPGDYSSAAFFLAAAAIT--PRSTGITLKNVQP--NPTDKG 272 (428)
T ss_pred HHHHcCCeEEeecc--EEEECCCccccC-------ceEEcCCChhhHHHHHHHHHhc--CCCceeeeccCCc--CcchhH
Confidence 99999999999853 799998764222 3455679999999998876543 3455 66666532 234566
Q ss_pred HHHHHHhCCCeEEEeCCCCcccEEEEcCCCCCceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEcccc--cccchHHHH
Q 021126 211 LVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKL--ISVPYVEMT 288 (317)
Q Consensus 211 l~~~L~~lGa~i~~~~~~~~~Pi~I~g~~~l~g~~i~l~g~~ssq~~saLllaA~~a~G~~~I~~~~~~--~s~~yv~~t 288 (317)
.+++|++|||+|++.++ .. |+|++.+.|+|.+|+.+. -.+.++.++++|++|+|+++|++++++ +|.+|+..+
T Consensus 273 ~~~vl~~MGa~i~~~~~-~~--l~V~~~~~l~gi~vd~~~--~pD~~p~lAvlAa~A~g~t~I~n~~~lRvKEsDRi~a~ 347 (428)
T COG0128 273 ILDVLEKMGADIEIGDD-SV--LRVRGSGELKGIEVDMDD--MPDLAPTLAVLAAFAEGTTRIRNAEELRVKESDRIAAM 347 (428)
T ss_pred HHHHHHHcCCeEEEccC-ce--EEEeecCCccCeEeCccc--CchHHHHHHHHHHhcCCCeEEEchHHhhhcchhHHHHH
Confidence 88999999999999764 22 689997569999987773 468899999999999999999999885 799999999
Q ss_pred HHHHHHcCCEEEEeCCcceEEEecCCCC
Q 021126 289 LKLMERFGVFVEHSDSWDRFFIQGGQKY 316 (317)
Q Consensus 289 ~~~L~~lG~~v~~~~d~~~i~I~G~~~~ 316 (317)
.++|++||++|++.+| .+.|+|+.++
T Consensus 348 a~eL~klG~~v~e~~D--gl~I~g~~~l 373 (428)
T COG0128 348 ATELRKLGVEVEETED--GLIITGGTKL 373 (428)
T ss_pred HHHHHhcCcEEEecCC--eEEEECCCCC
Confidence 9999999999999884 8999997443
No 18
>PLN02338 3-phosphoshikimate 1-carboxyvinyltransferase
Probab=99.87 E-value=3.7e-20 Score=182.69 Aligned_cols=239 Identities=17% Similarity=0.202 Sum_probs=172.9
Q ss_pred ccchhhhcccccccccCCceeEEEcCCCcee-eEEEecCCHHHH--HHHHHHHhhcCCcEEEeeCC---CChhHHHHHHH
Q 021126 59 VRTVRASASVGTAEKQSKASEIVLQPIREIS-GTVTLPGSKSLS--NRILLLAALSEGTTVVDNLL---SSEDIHHMLDA 132 (317)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~i~I~~~~~l~-G~v~ipgskS~a--~r~LlaAaLa~g~t~I~n~~---~s~dv~~~l~~ 132 (317)
...|+.+++....+....-.+++|++.+.+. ++++++|+.|++ ..+|++|++++|.++|++.. ..+++..++++
T Consensus 136 ~~~L~~lGa~i~~~~~~~~~pi~i~g~~~l~~~~~~i~g~~Ssq~~sall~aa~~~~g~~~I~~~~~~~s~p~~~~tl~~ 215 (443)
T PLN02338 136 VDGLKQLGADVECTLGTNCPPVRVNAAGGLPGGKVKLSGSISSQYLTALLMAAPLALGDVEIEIVDKLISVPYVEMTLKL 215 (443)
T ss_pred HHHHHHCCCEEEEcCCCCcCCEEEECCCCCCCceEEECCCCchHHHHHHHHHHhcCCCCcEEEECCCCCCccHHHHHHHH
Confidence 3466777766533333334679998754455 589999998888 67777888889999998542 34578899999
Q ss_pred HHHcCCEEEEcCCccEEEEEcCCCCcccccccCCceEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCchHHHH
Q 021126 133 LKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLV 212 (317)
Q Consensus 133 L~~lGa~I~~~~~~~~l~V~g~~~~~~~~~~~~~~~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~rpi~~l~ 212 (317)
|++||++|+..+....++|.|... +..+ ......+|.+++.+|++++ ++ .++++.+.|......++...++
T Consensus 216 L~~~G~~i~~~~~~~~i~i~~~~~-l~~~-----~~~~i~~D~ssa~~~la~a-~~--~~g~v~i~~~~~~~~~~d~~~l 286 (443)
T PLN02338 216 MERFGVSVEHSDSWDRFFIKGGQK-YKSP-----GNAYVEGDASSASYFLAGA-AI--TGGTVTVEGCGTTSLQGDVKFA 286 (443)
T ss_pred HHHcCCeEEecCCceEEEEcCCcc-ccCC-----CeEEeCCCHHHHHHHHHHH-Hh--cCCeEEECCCCCCCCcchhHHH
Confidence 999999998754323588876422 2111 1223356777777676443 44 3578999998777778777899
Q ss_pred HHHHhCCCeEEEeCCCCcccEEEEcCC-------CCCceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEcccc--cccc
Q 021126 213 TGLKQLGADVDCILGTNCPPVRINGKG-------GLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKL--ISVP 283 (317)
Q Consensus 213 ~~L~~lGa~i~~~~~~~~~Pi~I~g~~-------~l~g~~i~l~g~~ssq~~saLllaA~~a~G~~~I~~~~~~--~s~~ 283 (317)
+.|++||++++..++ . +.|.+.. .+++.+++... .++..++|+++|++++|+++|.+..++ ++.+
T Consensus 287 ~~L~~mGa~v~~~~~-~---i~i~~~~~~~~~~~~l~~~~~d~~~--~~d~~~~la~aa~~a~g~s~I~~~~~lr~kesd 360 (443)
T PLN02338 287 EVLEKMGAKVEWTEN-S---VTVTGPPRDAFGGKHLKAIDVNMNK--MPDVAMTLAVVALFADGPTAIRDVASWRVKETE 360 (443)
T ss_pred HHHHHcCCeEEEcCC-e---EEEcCCcccccccCCccceEECccc--ChhHHHHHHHHHHhCCCcEEEeCchhhcccchH
Confidence 999999999987543 3 6776531 36777665553 357788899899999999999987664 4667
Q ss_pred hHHHHHHHHHHcCCEEEEeCCcceEEEecCC
Q 021126 284 YVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ 314 (317)
Q Consensus 284 yv~~t~~~L~~lG~~v~~~~d~~~i~I~G~~ 314 (317)
+...+.+.|++||+++++++| .+.|+|++
T Consensus 361 R~~~~~~~L~~lGa~i~~~~d--~l~I~g~~ 389 (443)
T PLN02338 361 RMIAICTELRKLGATVEEGPD--YCIITPPK 389 (443)
T ss_pred HHHHHHHHHHHcCCEEEEeCC--EEEEECCC
Confidence 777788999999999998874 79998753
No 19
>PF00275 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); InterPro: IPR001986 This entry represents the core domain of 3-phosphoshikimate 1-carboxyvinyltransferase and UDP-N-acetylglucosamine 1-carboxyvinyltransferase. It transfers enolpryruvate from phosphoenolpyruvate to 3-phosphoshikimate and UDP-N-acetyl-alpha-D-glucosamine respectively. ; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 3R38_A 3SG1_A 3KR6_A 2Z2C_C 3SWD_K 3ISS_F 1A2N_A 3KQJ_A 1UAE_A 3VCY_D ....
Probab=99.87 E-value=3e-21 Score=189.29 Aligned_cols=238 Identities=21% Similarity=0.248 Sum_probs=180.8
Q ss_pred cccchhhhcccccccccCCceeEEEcCCCceeeEEEecCCHHHH--HHHHHHHh-hcCCcEEEeeCCCChhHHHHHHHHH
Q 021126 58 TVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLS--NRILLLAA-LSEGTTVVDNLLSSEDIHHMLDALK 134 (317)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~i~I~~~~~l~G~v~ipgskS~a--~r~LlaAa-La~g~t~I~n~~~s~dv~~~l~~L~ 134 (317)
....|+.+++.......+..-|+.|++ ...+.++++++.|++ ..+|++|+ +++|+++|.|....+++.+|+++|+
T Consensus 125 l~~~L~~lGa~i~~~~~~~~~pi~i~~--~~~~~~~i~~~~sSq~vs~lll~A~~~a~g~i~i~~~~s~p~i~~t~~~L~ 202 (419)
T PF00275_consen 125 LLDALRQLGARISYLNGEGFLPIRIRG--LKGGPIEIDGDISSQFVSALLLAAALLARGEITIINPASEPYIDMTIDMLK 202 (419)
T ss_dssp HHHHHHHTTEEEEEETTEEEEEECEEE--SSSBEEEEETSSSHHHHHHHHHHHHTTSBSEEEEESESSSHHHHHHHHHHH
T ss_pred HHHHHhhCCCEEEEecCCceEEEEEee--cccCcEEEeccCCCHHHHHHHHHHHHhcCCceEEeCCCCCCcHHHHHHHHh
Confidence 355777787766545554567888888 446678888887665 46666666 5788999999767789999999999
Q ss_pred HcCCEEEEcCCccEEEEEcCCCCcccccccCCceEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCchHHHHH-
Q 021126 135 KLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVT- 213 (317)
Q Consensus 135 ~lGa~I~~~~~~~~l~V~g~~~~~~~~~~~~~~~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~rpi~~l~~- 213 (317)
+||++|+++++.+.++|.|.....+. ......+|.+.+++|+++++ + .+++++|.|...-..+++..+++
T Consensus 203 ~~G~~i~~~~~~~~~~i~g~~~~~~~------~~~~v~~D~s~Aa~~l~aa~-l--~~g~v~i~~~~~~~~~gd~~~l~~ 273 (419)
T PF00275_consen 203 KFGAKIEVDGDENIISIPGGQYILPG------CEYTVPGDWSSAAFFLAAAA-L--TGGEVTIKNLPPNSLQGDKEFLDD 273 (419)
T ss_dssp HTT-EEEETTSTTEEEEETTSSBBBS------EEEE--B-HHHHHHHHHHHH-H--CTTEEEEESEEGGGGHHHHHHHHH
T ss_pred hceEEEEEccCCcEEEEEeccccccc------eeEEecCCHHHHHHHHHHHh-e--eCcEEEEEecCchhhhhhHHHHHH
Confidence 99999999655457999998641221 13444689999998887754 4 34699999987666666667888
Q ss_pred HHHhCCCeEEEeCCCCcccEEEEcCCCCCceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEcccc--cccchHHHHHHH
Q 021126 214 GLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKL--ISVPYVEMTLKL 291 (317)
Q Consensus 214 ~L~~lGa~i~~~~~~~~~Pi~I~g~~~l~g~~i~l~g~~ssq~~saLllaA~~a~G~~~I~~~~~~--~s~~yv~~t~~~ 291 (317)
.|++||++|+..++ +. +.+.+. .+++.++++...+ +..+.+.++|+++.|.++|.+..++ ++.+++..++++
T Consensus 274 iL~~mG~~i~~~~~-~~--~~~~~~-~~~~~~~di~~~p--d~~p~l~~~a~~a~g~t~~~g~~~lr~kesdR~~~~~~~ 347 (419)
T PF00275_consen 274 ILRRMGAKIEEEDD-GV--IVVGGS-GLRGIEIDISDAP--DLAPTLAVLAAFAEGETRISGVSHLRDKESDRIEAIVEE 347 (419)
T ss_dssp HHHHTTEEEEEESE-EE--EEEEET-TSBEBEEEEEBCS--TTCHHHHHHHHHHHHHEEEESEEEEEGSSSTTHHHHHHH
T ss_pred HHHHhCCCcccCCC-ee--EEEecc-cccccccccccCc--cchhHHHHHHHHhhcceeccccceeeeehHhhHHHHHHH
Confidence 99999999998764 32 455554 7899999988544 4466788889999999999998875 688999999999
Q ss_pred HHHcCCEEEEeCCcceEEEecCC
Q 021126 292 MERFGVFVEHSDSWDRFFIQGGQ 314 (317)
Q Consensus 292 L~~lG~~v~~~~d~~~i~I~G~~ 314 (317)
|++||+++++.+| .+.|.|++
T Consensus 348 L~klG~~~~~~~d--~l~i~~~~ 368 (419)
T PF00275_consen 348 LRKLGADIEEDGD--GLIIHGGR 368 (419)
T ss_dssp HHHTTSEEEEETT--EEEEEEES
T ss_pred HhhcCCCEEEECC--EEEEECCc
Confidence 9999999999984 88887764
No 20
>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=99.86 E-value=9.2e-20 Score=177.26 Aligned_cols=234 Identities=23% Similarity=0.258 Sum_probs=164.7
Q ss_pred ccchhhhcccccccccCCceeEEEcCCCceeeEEEecCCHHH--HHHHHHHHhhcCCcEEEeeC--CCChhHHHHHHHHH
Q 021126 59 VRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSL--SNRILLLAALSEGTTVVDNL--LSSEDIHHMLDALK 134 (317)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~i~I~~~~~l~G~v~ipgskS~--a~r~LlaAaLa~g~t~I~n~--~~s~dv~~~l~~L~ 134 (317)
...|+.+++..+......-.++ +.++....+++++|++.|. ...+|++|++++|.++|.+. ...+++..++++|+
T Consensus 116 ~~~L~~lGa~i~~~~~~~~~~i-~~~~~~~~~~~~i~~~~ss~~~~~ll~aa~l~~g~~~i~~~~~~~~~~i~~~~~~L~ 194 (409)
T cd01556 116 VDALRQLGAEIEGREGGGYPPL-IGGGGLKGGEVEIPGAVSSQFKSALLLAAPLAEGPTTIIIGELESKPYIDHTERMLR 194 (409)
T ss_pred HHHHHHCCCEEEeCCCCCCCCe-eecCCCCCcEEEeCCCCccHHHHHHHHHHhcCCCceEEEeeCCCCcCHHHHHHHHHH
Confidence 4456667765532222212233 4443333448899998655 35677788888999999985 34457889999999
Q ss_pred HcCCEEEEcCCccEEEEEcCCCCcccccccCCceEEEe-cCchhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCchHHHHH
Q 021126 135 KLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFL-GNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVT 213 (317)
Q Consensus 135 ~lGa~I~~~~~~~~l~V~g~~~~~~~~~~~~~~~~i~~-g~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~rpi~~l~~ 213 (317)
+||++|+.++. ..++|+|.+. +. ...+++ +|...+.+++ +++++ .+++++++|....+ ++..+++
T Consensus 195 ~lGa~i~~~~~-~~i~I~~~~~-l~-------~~~i~i~~d~s~~~~l~-~~a~~--~~~~v~i~~~~~~~--~~~~~~~ 260 (409)
T cd01556 195 AFGAEVEVDGY-RTITVKGGQK-YK-------GPEYTVEGDASSAAFFL-AAAAI--TGSEIVIKNVGLNS--GDTGIID 260 (409)
T ss_pred HcCCcEEecCC-cEEEECCCCc-cc-------cCeeEeCCcHHHHHHHH-HHHHh--cCCeEEEcCCCCCC--hHHHHHH
Confidence 99999998762 3788987532 22 113333 3444444344 44444 34899999976554 6788999
Q ss_pred HHHhCCCeEEEeCCCCcccEEEEcCCCCCceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEcccc--cccchHHHHHHH
Q 021126 214 GLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKL--ISVPYVEMTLKL 291 (317)
Q Consensus 214 ~L~~lGa~i~~~~~~~~~Pi~I~g~~~l~g~~i~l~g~~ssq~~saLllaA~~a~G~~~I~~~~~~--~s~~yv~~t~~~ 291 (317)
.|++||++++..++ + +++|.+.+.+++.+++.+ ..+++.+.++++|++++|+++|++.++. ++.+|+..+.+.
T Consensus 261 ~L~~~G~~i~~~~~-~--~i~i~~~~~~~~~~v~~~--~~~d~~~~la~~a~~a~g~~~i~~~~~~~~~~s~r~~~~~~~ 335 (409)
T cd01556 261 VLKEMGADIEIGNE-D--TVVVESGGKLKGIDIDGN--DIPDEAPTLAVLAAFAEGPTRIRNAAELRVKESDRIAAMATE 335 (409)
T ss_pred HHHHCCCeEEEcCC-C--eEEEccCCCcCceEeccc--cCchHHHHHHHHHHhCCCCEEEEChhhhccccchHHHHHHHH
Confidence 99999999987542 2 388887545788776544 3578888999899999999999987665 456777878999
Q ss_pred HHHcCCEEEEeCCcceEEEecCC
Q 021126 292 MERFGVFVEHSDSWDRFFIQGGQ 314 (317)
Q Consensus 292 L~~lG~~v~~~~d~~~i~I~G~~ 314 (317)
|++||+++++++ +.+.|+|++
T Consensus 336 L~~lG~~i~~~~--~~l~i~g~~ 356 (409)
T cd01556 336 LRKLGADVEETE--DGLIIEGGP 356 (409)
T ss_pred HHHcCCEEEEEC--CEEEEECCC
Confidence 999999999887 489999875
No 21
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.86 E-value=8e-20 Score=188.48 Aligned_cols=237 Identities=14% Similarity=0.101 Sum_probs=173.0
Q ss_pred ccchhhhcccccccccCCceeEEEcCCCce-eeEEEecCCHHHH--HHHHHHHhhcC-CcEEEeeCC---CChhHHHHHH
Q 021126 59 VRTVRASASVGTAEKQSKASEIVLQPIREI-SGTVTLPGSKSLS--NRILLLAALSE-GTTVVDNLL---SSEDIHHMLD 131 (317)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~i~I~~~~~l-~G~v~ipgskS~a--~r~LlaAaLa~-g~t~I~n~~---~s~dv~~~l~ 131 (317)
...|+.+++........+-.+++|++.... .+++++|||.|++ ..+|++|+++. +.++|++.. ..++++.+++
T Consensus 130 l~~L~~lGa~v~~~~~~g~~pi~I~g~~l~~g~~i~i~gd~SSq~~SalLlAA~~~~g~~~~I~~~~~~~s~~~i~~t~~ 209 (661)
T PRK11860 130 VDALRQLGCDIDYLGNEGFPPLRIGPAPLRLDAPIRVRGDVSSQFLTALLMALPLVARRDITIEVVGELISKPYIEITLN 209 (661)
T ss_pred HHHHHHCCCEEEEcCCCCcccEEEECCCcCCCceEEEcCCCcHHHHHHHHHHHHhCCCCCeEEEeCCCCCCCCHHHHHHH
Confidence 345666666553232233467899875333 5689999999888 35555565655 667888742 3468999999
Q ss_pred HHHHcCCEEEEcCCccEEEEEcCCCCcccccccCCceEEEecCchhhHHHHHHHHHHcCCCc-EEEEeCCCCCCCCchHH
Q 021126 132 ALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNL-SYILDGVPRMRERPIGD 210 (317)
Q Consensus 132 ~L~~lGa~I~~~~~~~~l~V~g~~~~~~~~~~~~~~~~i~~g~sgta~r~l~a~la~~~~~~-~~~i~G~~~l~~rpi~~ 210 (317)
+|++||++|++.+. ..++|.+.+.... + ...-..+|.+.+.+|+++ ++. .++ ++.++|..+.+.++...
T Consensus 210 ~L~~~G~~v~~~~~-~~i~v~~~~~l~~-~-----~~~~V~~D~s~a~~l~aa-aa~--~~G~~v~i~~v~~~~~q~d~~ 279 (661)
T PRK11860 210 LLARFGIAVQREGW-QRFTIPAGSRYRS-P-----GEIHVEGDASSASYFIAA-GAI--AGGAPVRIEGVGRDSIQGDIR 279 (661)
T ss_pred HHHHCCCEEEecCC-cEEEEcCCcccCC-C-----ceeEcCCCHHHHHHHHHH-HHh--CCCCeEEECCCCCCCCccHHH
Confidence 99999999997553 3688876432111 1 111123566666655544 444 346 89999999888888889
Q ss_pred HHHHHHhCCCeEEEeCCCCcccEEEEcC-CCCCceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEcccc--cccchHHH
Q 021126 211 LVTGLKQLGADVDCILGTNCPPVRINGK-GGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKL--ISVPYVEM 287 (317)
Q Consensus 211 l~~~L~~lGa~i~~~~~~~~~Pi~I~g~-~~l~g~~i~l~g~~ssq~~saLllaA~~a~G~~~I~~~~~~--~s~~yv~~ 287 (317)
+++.|++||+++++.++ . +.|.+. +.+++.+++.. ..++++++|+++|++++|+++|++.+++ ++.+++..
T Consensus 280 il~~L~kmGa~i~~~~~--~--i~i~~~~~~l~g~~id~~--~~pdi~p~Lavla~~a~G~s~I~~v~~lr~KEsdRi~~ 353 (661)
T PRK11860 280 FAEAARAMGAQVTSGPN--W--LEVRRGAWPLKAIDLDCN--HIPDAAMTLAVMALYADGTTTLRNIASWRVKETDRIAA 353 (661)
T ss_pred HHHHHHHcCCEEEEeCC--E--EEEEecCCCCcceEEcCc--CChHHHHHHHHHHHhCCCcEEEeChhHhhhchhhHHHH
Confidence 99999999999998663 3 788763 25888887665 3578999999999999999999988764 57788888
Q ss_pred HHHHHHHcCCEEEEeCCcceEEEecC
Q 021126 288 TLKLMERFGVFVEHSDSWDRFFIQGG 313 (317)
Q Consensus 288 t~~~L~~lG~~v~~~~d~~~i~I~G~ 313 (317)
+.+.|++||+++++.+ +.+.|+|.
T Consensus 354 ~~~~L~~LGa~i~~~~--d~l~I~g~ 377 (661)
T PRK11860 354 MATELRKLGATVEEGA--DYIRVTPP 377 (661)
T ss_pred HHHHHHHCCCEEEEeC--CeEEEECC
Confidence 8999999999999887 48999985
No 22
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer.
Probab=99.86 E-value=1.5e-19 Score=176.13 Aligned_cols=237 Identities=15% Similarity=0.170 Sum_probs=174.2
Q ss_pred ccchhhhcccccccccCCceeEEEcCCCceeeEEEecCCHHHH--HHHHHHHhhcCCcEEEeeCCCChhHHHHHHHHHHc
Q 021126 59 VRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLS--NRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKL 136 (317)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~i~I~~~~~l~G~v~ipgskS~a--~r~LlaAaLa~g~t~I~n~~~s~dv~~~l~~L~~l 136 (317)
...|+.+++..+...+....++++.+ +...+++.++++.|.+ ..++++|++++|+++|++.....++..++++|++|
T Consensus 117 ~~~L~~~Ga~i~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~q~~~~ll~aa~~~~g~~~i~~~~~~~~i~~~~~~L~~~ 195 (408)
T cd01554 117 TLPLKKMGASISGQEERDLPPLLKGG-KNLGPIHYEDPIASAQVKSALMFAALLAKGETVIIEAAKEPTINHTENMLQTF 195 (408)
T ss_pred HHHHHHCCCEEEECCCCCcCCEEEec-CCCCCeEEeCCcccHHHHHHHHHHHhcCCCceEEEEeCCCCCHHHHHHHHHHC
Confidence 45567777765434444445666654 3344588999864433 46677777899999999986667899999999999
Q ss_pred CCEEEEcCCccEEEEEcCCCCcccccccCCceEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCchHHHHHHHH
Q 021126 137 GLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLK 216 (317)
Q Consensus 137 Ga~I~~~~~~~~l~V~g~~~~~~~~~~~~~~~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~rpi~~l~~~L~ 216 (317)
|++|++.+. ..++|+|.+. +.. ...-..+|...+++++++++ + .+++++|.|..... ++..+++.|+
T Consensus 196 G~~i~~~~~-~~i~I~g~~~-~~~------~~~~i~~D~~~a~~~l~~~~-l--~~~~v~i~~~~~~~--~~~~~~~~L~ 262 (408)
T cd01554 196 GGHISVQGT-KKIVVQGPQK-LTG------QKYVVPGDISSAAFFLVAAA-I--APGRLVLQNVGINE--TRTGIIDVLR 262 (408)
T ss_pred CCEEEecCC-cEEEECCCcc-ccc------ceEEeCCChhHHHHHHHHHh-h--cCCeEEEecCCCCc--hhhHHHHHHH
Confidence 999997652 3789988542 221 11122467777777776654 3 34789999876433 7788999999
Q ss_pred hCCCeEEEeCCCCcccEEEEcCCCCCceEEEeCCCC-CHHHHHHHHHHHhcCCCeEEEEEcccc--cccchHHHHHHHHH
Q 021126 217 QLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKL-SSQYLTALLMAAPLALGNVEIEIIDKL--ISVPYVEMTLKLME 293 (317)
Q Consensus 217 ~lGa~i~~~~~~~~~Pi~I~g~~~l~g~~i~l~g~~-ssq~~saLllaA~~a~G~~~I~~~~~~--~s~~yv~~t~~~L~ 293 (317)
+||++++..++ . +++++. .++|.+++++..+ .+++.+.++++|++++|+++|.+..++ ++.+++..++++|+
T Consensus 263 ~~G~~v~~~~~--~--i~v~~~-~~~~~~i~~~~~~~~~d~~p~l~~~a~~a~g~~~i~~~~~lr~ke~dr~~~~~~~L~ 337 (408)
T cd01554 263 AMGAKIEIGED--T--ISVESS-DLKATEICGALIPRLIDELPIIALLALQAQGTTVIKDAEELKVKETDRIFVVADELN 337 (408)
T ss_pred HcCCEEEEeCC--e--EEEecC-CceeEEeccccCCCCchHHHHHHHHHHcCCCcEEEECcccccccchhhHHHHHHHHH
Confidence 99999998653 3 788875 6888888765311 356778899999999999999988654 46688888899999
Q ss_pred HcCCEEEEeCCcceEEEecCCCC
Q 021126 294 RFGVFVEHSDSWDRFFIQGGQKY 316 (317)
Q Consensus 294 ~lG~~v~~~~d~~~i~I~G~~~~ 316 (317)
+||++++.++ +.++|+|.+++
T Consensus 338 ~~G~~i~~~~--~~l~i~g~~~l 358 (408)
T cd01554 338 SMGADIEPTA--DGMIIKGKEKL 358 (408)
T ss_pred HcCCEEEEEC--CEEEEECCCCC
Confidence 9999999877 58999986543
No 23
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.86 E-value=1.2e-19 Score=187.67 Aligned_cols=240 Identities=20% Similarity=0.230 Sum_probs=172.7
Q ss_pred ccchhhhcccccccccCCceeEEEcCCCc-eeeEEEecCCHHHHH--HHHHHHhhc---CCcEEEe--e-CCCChhHHHH
Q 021126 59 VRTVRASASVGTAEKQSKASEIVLQPIRE-ISGTVTLPGSKSLSN--RILLLAALS---EGTTVVD--N-LLSSEDIHHM 129 (317)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~i~I~~~~~-l~G~v~ipgskS~a~--r~LlaAaLa---~g~t~I~--n-~~~s~dv~~~ 129 (317)
...|+.+++....+....-.|++|+|.+. ..+.++++|++|++. .+|++|.+. ++.+.|. | ....+|+++|
T Consensus 366 l~~L~~lGa~v~~~~~~~~~p~~I~g~~~~~~~~~~v~g~~Ssq~iSalLlaa~~l~a~~~~~~i~~~g~~~S~pyv~~t 445 (673)
T PRK11861 366 VDGLRQIGARIDYEGNEGFPPLRIRPATISVDAPIRVRGDVSSQFLTALLMTLPLVKAKDGASVVEIDGELISKPYIEIT 445 (673)
T ss_pred HHHHHHCCCcEEeCCCCCCCCEEEECCCcCCCCeEEeCCCccHHHHHHHHHHhHhhccCCCCEEEEECCccCCcCHHHHH
Confidence 45677777665333333345799988643 356899999988873 355566543 3555454 4 3344689999
Q ss_pred HHHHHHcCCEEEEcCCccEEEEEcCCCCcccccccCCceEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCchH
Q 021126 130 LDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIG 209 (317)
Q Consensus 130 l~~L~~lGa~I~~~~~~~~l~V~g~~~~~~~~~~~~~~~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~rpi~ 209 (317)
+++|++||++|++.+. ..++|.+...... + ......+|.+.+.+|++++ ++ .++++.|.|....+.++..
T Consensus 446 ~~~L~~fG~~V~~~~~-~~i~V~~~~~~~~-~-----~~~~V~~D~SsAa~~laaA-al--~~g~v~I~g~~~~~~q~d~ 515 (673)
T PRK11861 446 IKLMARFGVTVERDGW-QRFTVPAGVRYRS-P-----GTIMVEGDASSASYFLAAG-AL--GGGPLRVEGVGRASIQGDV 515 (673)
T ss_pred HHHHHHCCCEEEEcCC-cEEEEcCCcccCC-C-----ceeECCCChHHHHHHHHHH-Hh--cCCeEEECCCCCCCCchHH
Confidence 9999999999998653 3688875422111 1 1222346666777676654 44 3579999999888888888
Q ss_pred HHHHHHHhCCCeEEEeCCCCcccEEEEcC----CCCCceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEcccc--cccc
Q 021126 210 DLVTGLKQLGADVDCILGTNCPPVRINGK----GGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKL--ISVP 283 (317)
Q Consensus 210 ~l~~~L~~lGa~i~~~~~~~~~Pi~I~g~----~~l~g~~i~l~g~~ssq~~saLllaA~~a~G~~~I~~~~~~--~s~~ 283 (317)
.+++.|++||++|+..++ . ++|.+. +.+++.+++.. ..++..+.|+++|++++|+++|+++.++ ++.+
T Consensus 516 ~i~~iL~~mGa~i~~~~~--~--i~i~~~~~~~~~l~~~~iD~~--~~pDl~p~laalaa~a~G~s~I~~v~~lr~KEsd 589 (673)
T PRK11861 516 GFANALMQMGANVTMGDD--W--IEVRGIGHDHGRLAPIDMDFN--LIPDAAMTIAVAALFADGPSTLRNIGSWRVKETD 589 (673)
T ss_pred HHHHHHHHcCCcEEEeCC--e--EEEeeccccCCCccceeeccc--cCchHHHHHHHHHHhCCCCEEEECccccccccch
Confidence 899999999999998653 3 777752 24677666554 2357789999999999999999998764 6889
Q ss_pred hHHHHHHHHHHcCCEEEEeCCcceEEEecCCCC
Q 021126 284 YVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKY 316 (317)
Q Consensus 284 yv~~t~~~L~~lG~~v~~~~d~~~i~I~G~~~~ 316 (317)
++..+.++|++||+++++.+ |.++|+|+.++
T Consensus 590 Ri~a~~~eL~klGa~v~~~~--d~l~I~g~~~l 620 (673)
T PRK11861 590 RIAAMATELRKVGATVEEGA--DYLVVTPPAQL 620 (673)
T ss_pred HHHHHHHHHHHcCCEEEEeC--CeEEEECCCCC
Confidence 99889999999999999987 48999985433
No 24
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. Sequences scoring between the trusted and noise cutoffs include fragmentary and aberrant sequences in which generally well-conserved motifs are missing or altererd, but no example of a protein known to have a different function.
Probab=99.85 E-value=5.9e-20 Score=179.14 Aligned_cols=201 Identities=22% Similarity=0.330 Sum_probs=158.4
Q ss_pred eeEEEcCCCceee-EEEecCCHHHHHHHHHHHhhcCCcEEEeeCCCCh-h-HHHHHHHHHHcCCEEEEcCCccEEEEEcC
Q 021126 78 SEIVLQPIREISG-TVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSE-D-IHHMLDALKKLGLNVEEDFAMKRAIVEGC 154 (317)
Q Consensus 78 ~~i~I~~~~~l~G-~v~ipgskS~a~r~LlaAaLa~g~t~I~n~~~s~-d-v~~~l~~L~~lGa~I~~~~~~~~l~V~g~ 154 (317)
.+++|+|.+.+.+ ++++|+|.|++..++++|++++|.++|.|+..+. . ...++++|++||++|++.++ .++|.+.
T Consensus 203 ~~i~I~g~~~l~~~~~~i~~D~ssa~~ll~aa~l~~g~i~i~~~~~~~~~~~~~~~~~L~~~Ga~i~~~~~--~i~v~~~ 280 (409)
T TIGR01356 203 RKIVVPGGQKYGPQGYDVPGDYSSAAFFLAAAAITGGRVTLENLGINPTQGDKAIIIVLEEMGADIEVEED--DLIVEGA 280 (409)
T ss_pred cEEEECCCCccCCCeeECCCCHHHHHHHHHHHHhcCCEEEECCCCCCCCCCcHHHHHHHHHcCCeEEEeCC--eEEEEec
Confidence 4789988755665 7999999999988888888888889999976543 2 23578899999999998764 7888864
Q ss_pred CCCcccccccCCceEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCCCCCC---chHHHHHHHHhCCCeEEEeCCCCcc
Q 021126 155 GGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRER---PIGDLVTGLKQLGADVDCILGTNCP 231 (317)
Q Consensus 155 ~~~~~~~~~~~~~~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~r---pi~~l~~~L~~lGa~i~~~~~~~~~ 231 (317)
.. +. ...+++.+.+..+++++++++. .++++.|+|..+++.+ .+..+++.|++||++++..++ .
T Consensus 281 ~~-l~-------~~~~~~~d~~d~~~~l~~~aa~--a~g~~~i~~~~~~~~~e~dr~~~~~~~L~~~G~~i~~~~d--~- 347 (409)
T TIGR01356 281 SG-LK-------GIKIDMDDMIDELPTLAVLAAF--AEGVTRITGAEELRVKESDRIAAIAEELRKLGVDVEEFED--G- 347 (409)
T ss_pred CC-Cc-------cEEEECCCChhHHHHHHHHHHh--CCCCEEEEChhHhhhcccHHHHHHHHHHHHcCCEEEEeCC--e-
Confidence 32 21 2345677888888777765554 5689999998877654 346689999999999998764 4
Q ss_pred cEEEEcCCCCCceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEcccccccchHHHHHHHHHHcCCE
Q 021126 232 PVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVF 298 (317)
Q Consensus 232 Pi~I~g~~~l~g~~i~l~g~~ssq~~saLllaA~~a~G~~~I~~~~~~~s~~yv~~t~~~L~~lG~~ 298 (317)
+.|+|++.++|.+++.++ +++.+|+++++|++++|+++|++.+ ..++.|+++ ++.|+++|++
T Consensus 348 -i~i~g~~~l~g~~i~~~~--d~r~am~lav~a~~~~g~~~I~n~~-~v~~s~p~f-~~~l~~lg~~ 409 (409)
T TIGR01356 348 -LYIRGKKELKGAVVDTFG--DHRIAMAFAVAGLVAEGEVLIDDPE-CVAKSFPSF-FDVLERLGAN 409 (409)
T ss_pred -EEEECCCCCCCCeeeCCC--cHHHHHHHHHHHhcCCCCeEEcCcC-eeeccCchH-HHHHHHhhCC
Confidence 889875468898888774 4799999999999999999999875 568899998 6789999964
No 25
>COG0766 MurA UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane]
Probab=99.83 E-value=1e-18 Score=165.47 Aligned_cols=231 Identities=21% Similarity=0.268 Sum_probs=169.9
Q ss_pred cccchhhhcccccccccCCceeEEEcCCCceee-EEEec-CCHHHHHHHHHHHhhcCCcEEEeeCCCChhHHHHHHHHHH
Q 021126 58 TVRTVRASASVGTAEKQSKASEIVLQPIREISG-TVTLP-GSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKK 135 (317)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~i~I~~~~~l~G-~v~ip-gskS~a~r~LlaAaLa~g~t~I~n~~~s~dv~~~l~~L~~ 135 (317)
-.+.|..++|...-+ ...+..+..+.+.| ++.+| .|...+..+|+||.+++|+|.|+|....++|.++.++|++
T Consensus 127 Hl~gleaLGA~i~~e----~g~i~a~a~~~L~G~~I~ld~~SVGATenimmAA~lA~G~TvIeNAA~EPEIvDLa~~Ln~ 202 (421)
T COG0766 127 HLKGLEALGAEIEIE----HGYIEASAPKGLKGAHIYLDKVSVGATENIMMAAVLAEGTTVIENAAREPEIVDLANFLNK 202 (421)
T ss_pred HHHHHHHcCCEEEEc----CCEEEEEccCCccceEEEecCCcccHHHHHHHHHHhcCCcEEEeecccCchHHHHHHHHHH
Confidence 344566777655211 22344444333655 67777 7999999999999999999999999999999999999999
Q ss_pred cCCEEEEcCCccEEEEEcCCCCcccccccCCceEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCchHHHHHHH
Q 021126 136 LGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGL 215 (317)
Q Consensus 136 lGa~I~~~~~~~~l~V~g~~~~~~~~~~~~~~~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~rpi~~l~~~L 215 (317)
||++|+..+. ++++|+|...+....|... ++.| ++|| |+.+++ + ..+.+.+.+. ....++.+++.|
T Consensus 203 MGA~I~GaGT-~~I~I~GV~~L~g~~h~Vi-pDRI---EAGT---~~~aaA-~--tgg~v~i~~v---~~~hl~~~~~kL 268 (421)
T COG0766 203 MGAKIEGAGT-STITIEGVEKLHGAEHSVI-PDRI---EAGT---FLVAAA-I--TGGDVTIENV---RPEHLEAVLAKL 268 (421)
T ss_pred cCCeeEEcCC-CeEEEeccccccceeeEec-Cchh---hHHH---HHHHHH-H--hCCcEEEeCC---CHHHHHHHHHHH
Confidence 9999999986 6999999987655443322 3445 6667 666654 3 3589999987 466688999999
Q ss_pred HhCCCeEEEeCCCCcccEEEEcCC-CCCceEEEe---CCCCCHHHHHHHHHHHhcCCCeEEEEEcccccccchHHHHHHH
Q 021126 216 KQLGADVDCILGTNCPPVRINGKG-GLPGGKVKL---SGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKL 291 (317)
Q Consensus 216 ~~lGa~i~~~~~~~~~Pi~I~g~~-~l~g~~i~l---~g~~ssq~~saLllaA~~a~G~~~I~~~~~~~s~~yv~~t~~~ 291 (317)
++||++++..++ + ++|...+ .+++.+++. ||++. ++-.-++.+.+.++|.++|+.. -++++ .+.+++
T Consensus 269 ~e~G~~~~~~~~-~---i~v~~~~~~~k~v~i~T~p~PGFpT-DmQaqf~~L~~~a~G~s~I~Et-ifEnR---f~hv~E 339 (421)
T COG0766 269 REAGVDIEEGED-G---IRVDMEGKRLKAVDIKTLPYPGFPT-DMQAQFMALLTVAEGTSVITET-IFENR---FMHVPE 339 (421)
T ss_pred HHhCCeEEEcCC-e---EEEeccCCCCCcceeccCCCCCCch-hHHHHHHHHHhhcCCceEEEEe-echhh---hhhHHH
Confidence 999999998764 4 7777642 478877764 55542 1112244456788999999831 24443 566889
Q ss_pred HHHcCCEEEEeCCcceEEEecCCCCC
Q 021126 292 MERFGVFVEHSDSWDRFFIQGGQKYK 317 (317)
Q Consensus 292 L~~lG~~v~~~~d~~~i~I~G~~~~~ 317 (317)
|++||++++.++ ++.+|+|..+|+
T Consensus 340 L~RmGA~i~~~g--~~a~i~G~~~L~ 363 (421)
T COG0766 340 LIRMGANIKLEG--NTAVIQGVEQLS 363 (421)
T ss_pred HHhCCCceEEEC--CEEEEECCcccc
Confidence 999999999998 599999987763
No 26
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed
Probab=99.81 E-value=3e-18 Score=167.60 Aligned_cols=215 Identities=21% Similarity=0.296 Sum_probs=152.3
Q ss_pred cchhhhcccccccccCCceeEEEcCCCceee-EEEecCCHHHHHHHHHHHhhcCCcEEEeeCCCChhHHHHHHHHHHcCC
Q 021126 60 RTVRASASVGTAEKQSKASEIVLQPIREISG-TVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGL 138 (317)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~i~I~~~~~l~G-~v~ipgskS~a~r~LlaAaLa~g~t~I~n~~~s~dv~~~l~~L~~lGa 138 (317)
..++.+++.. +. ....++.|+|.+.++| ++++++|.+.+..+|++|++..+.++|.|+. ..+++.++++|++||+
T Consensus 196 ~~L~~~G~~i--~~-~~~~~i~I~g~~~~~~~~~~v~~d~~sa~~~l~~aa~~~~~~~i~~~~-~~~~~~~~~~L~~~G~ 271 (417)
T PRK12830 196 TLLNNMGANI--KG-AGTDVIRIEGVDELHGCRHTVIPDRIEAGTYMILAAACGGGVTINNVI-PEHLESFIAKLEEMGV 271 (417)
T ss_pred HHHHHCCCEE--EE-cCCcEEEEccCCcccCcEEeeCCCcHHHHHHHHHHHHhCCCEEEeCCC-hhHHHHHHHHHHHCCC
Confidence 3455555433 21 2346899999766665 7888999888876677666666778899875 4478899999999999
Q ss_pred EEEEcCCccEEEEEcCCCCcccccccCCceEEEecCch----hhHHHHHHHHHHcCCCcEEEEe-CCCCCCCCchHHHHH
Q 021126 139 NVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAG----TAMRPLTAAVTAAGGNLSYILD-GVPRMRERPIGDLVT 213 (317)
Q Consensus 139 ~I~~~~~~~~l~V~g~~~~~~~~~~~~~~~~i~~g~sg----ta~r~l~a~la~~~~~~~~~i~-G~~~l~~rpi~~l~~ 213 (317)
+|+++++ .++|.+... +. ...++..+.+ +...+++++++. .+++.++. |..+.+.+ .++
T Consensus 272 ~i~~~~~--~i~v~~~~~-l~-------~~~i~~~~~p~~~~D~~~~laa~a~~--a~g~~~i~~~~~~~r~~----~~~ 335 (417)
T PRK12830 272 RVEVNED--SIFVEKQGN-LK-------AVDIKTLPYPGFATDLQQPLTPLLLK--ANGRSVVTDTIYEKRFK----HVD 335 (417)
T ss_pred EEEEcCC--EEEEEeCCC-cc-------ceeeccCCCCCChHHHHHHHHHHHHc--CCCcEEEEeccchhhHH----HHH
Confidence 9998654 788876432 21 1233433333 565565555443 34566665 66554433 478
Q ss_pred HHHhCCCeEEEeCCCCcccEEEEcCCCCCceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEcccccccchHHHHHHHHH
Q 021126 214 GLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLME 293 (317)
Q Consensus 214 ~L~~lGa~i~~~~~~~~~Pi~I~g~~~l~g~~i~l~g~~ssq~~saLllaA~~a~G~~~I~~~~~~~s~~yv~~t~~~L~ 293 (317)
.|++||+++++.++ . ++|+|..+++|.+++. + +++.+|+++++|++++|+++|++.+. ..+.|.++ .+.|+
T Consensus 336 ~L~~mGa~i~~~~~--~--l~i~g~~~l~g~~v~~-~--D~r~am~lav~a~~a~g~~~I~~~~~-~~~~~~~~-~~~L~ 406 (417)
T PRK12830 336 ELKRMGANIKVEGR--S--AIITGPSKLTGAKVKA-T--DLRAGAALVIAGLMAEGVTEITNIEH-IDRGYSNI-IEKLK 406 (417)
T ss_pred HHHHCCCeEEEECC--E--EEEECCCCccCceecC-C--chHHHHHHHHHHHcCCCcEEECChhH-hhCCHHHH-HHHHH
Confidence 99999999998763 4 8898754689988875 3 46789999999999999999998764 35668766 77999
Q ss_pred HcCCEEEEeC
Q 021126 294 RFGVFVEHSD 303 (317)
Q Consensus 294 ~lG~~v~~~~ 303 (317)
++|++++..+
T Consensus 407 ~lG~~i~~~~ 416 (417)
T PRK12830 407 ALGADIWREE 416 (417)
T ss_pred HcCCeEEEcc
Confidence 9999998654
No 27
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.80 E-value=4.2e-18 Score=167.33 Aligned_cols=220 Identities=20% Similarity=0.280 Sum_probs=160.1
Q ss_pred cchhhhcccccccccCCceeEEEcCCCceee-EEEecCCHHHHHHHHHHHhhcCC-cEEEeeCCCC--hhHHHHHHHHHH
Q 021126 60 RTVRASASVGTAEKQSKASEIVLQPIREISG-TVTLPGSKSLSNRILLLAALSEG-TTVVDNLLSS--EDIHHMLDALKK 135 (317)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~i~I~~~~~l~G-~v~ipgskS~a~r~LlaAaLa~g-~t~I~n~~~s--~dv~~~l~~L~~ 135 (317)
.-|+.+++......+....+++|+|.+.+.+ ++.+|+|.|++..+++++++++| +++|.|+... .....++++|++
T Consensus 203 ~~L~~lG~~i~~~~~~~~~~i~I~g~~~l~~~~~~i~~D~ssa~~ll~aa~~~~g~~i~i~~~~~~~~~~~~~~l~~L~~ 282 (435)
T PRK02427 203 RMLRAFGVEVENVEGWGYRRIVIKGGQRLRGQDITVPGDPSSAAFFLAAAAITGGSEVTITNVGLNSTQGGKAIIDVLEK 282 (435)
T ss_pred HHHHHCCCeEEeecCCcccEEEECCCcccccceEEeCCCHHHHHHHHHHHHhCCCCeEEEeCCCCCCCcchHHHHHHHHH
Confidence 3445555443211221346889988655665 79999999998888888888888 7899886332 334679999999
Q ss_pred cCCEEEEcCCc------cEEEEEcCCCCcccccccCCceEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCc--
Q 021126 136 LGLNVEEDFAM------KRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERP-- 207 (317)
Q Consensus 136 lGa~I~~~~~~------~~l~V~g~~~~~~~~~~~~~~~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~rp-- 207 (317)
||++|+..++. ..++|.+ + .+. ...+++++.+.++++++++++. .+++++|+|..+++.+.
T Consensus 283 ~G~~v~~~~~~~~~~~~~~i~i~~-~-~l~-------~~~~~~~d~~d~~~~l~~~a~~--a~g~~~i~~~~~~r~~e~d 351 (435)
T PRK02427 283 MGADIEIENEREGGEPVGDIRVRS-S-ELK-------GIDIDIPDIIDEAPTLAVLAAF--AEGTTVIRNAEELRVKETD 351 (435)
T ss_pred cCCceEeccccccCCccCcEEEec-C-Ccc-------cEEeecCCCchHHHHHHHHHHh--CCCCEEEEChhhccccccH
Confidence 99999864420 1377763 2 222 2345577777777777665554 46889999988776432
Q ss_pred -hHHHHHHHHhCCCeEEEeCCCCcccEEEEcCCCCCceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEcccccccchHH
Q 021126 208 -IGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVE 286 (317)
Q Consensus 208 -i~~l~~~L~~lGa~i~~~~~~~~~Pi~I~g~~~l~g~~i~l~g~~ssq~~saLllaA~~a~G~~~I~~~~~~~s~~yv~ 286 (317)
+..+++.|++||+++++.++ . ++|.|. +++|. ++.++ +++.+++++++|++++|+++|++.+ ..++.|++
T Consensus 352 r~~~~~~~L~~~Ga~v~~~~~--~--i~i~g~-~~~~~-v~~~~--d~r~a~~l~~~a~~a~g~~~i~~~~-~v~~~~p~ 422 (435)
T PRK02427 352 RIAAMATELRKLGAEVEETED--G--LIITGG-PLAGV-VDSYG--DHRIAMAFAIAGLAAEGPVTIDDPE-CVAKSFPD 422 (435)
T ss_pred HHHHHHHHHHHCCCEEEEeCC--e--EEEECC-CCCCC-ccCCC--cHHHHHHHHHHHHcCCCCEEEeccC-eeeccCCC
Confidence 45799999999999998653 4 889986 56777 76664 4799999999999999999999876 46788998
Q ss_pred HHHHHHHHcCCEEE
Q 021126 287 MTLKLMERFGVFVE 300 (317)
Q Consensus 287 ~t~~~L~~lG~~v~ 300 (317)
+ ++.|+++|++|+
T Consensus 423 f-~~~l~~lg~~i~ 435 (435)
T PRK02427 423 F-FEDLASLGANIE 435 (435)
T ss_pred H-HHHHHHHhccCC
Confidence 8 678999999874
No 28
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
Probab=99.79 E-value=1.7e-17 Score=162.49 Aligned_cols=199 Identities=18% Similarity=0.233 Sum_probs=148.4
Q ss_pred CceeEEEcCCCceee-EEEecCCHHHHHHHHHHHhhcCCcEEEeeCCCChhHHHHHHHHHHcCCEEEEcCCccEEEEEcC
Q 021126 76 KASEIVLQPIREISG-TVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGC 154 (317)
Q Consensus 76 ~~~~i~I~~~~~l~G-~v~ipgskS~a~r~LlaAaLa~g~t~I~n~~~s~dv~~~l~~L~~lGa~I~~~~~~~~l~V~g~ 154 (317)
...++.|+|.+.+.+ ++++++|.|.+..++++|+++++.++|.|+. .++++.++++|++||++|+++++ .++|.+.
T Consensus 211 ~~~~i~I~g~~~~~~~~~~v~~D~s~as~ll~aa~l~~g~v~i~~~~-~~~~~~~~~~L~~~G~~v~~~~~--~i~v~~~ 287 (417)
T PRK09369 211 GTDTITIEGVERLHGAEHTVIPDRIEAGTFLVAAAITGGDVTIRGAR-PEHLEAVLAKLREAGAEIEEGED--GIRVDMP 287 (417)
T ss_pred CCceEEEcCCCccCCceEEecCCHHHHHHHHHHHHHcCCceEEecCC-hhHHHHHHHHHHHcCCEEEEcCC--EEEEeeC
Confidence 356899998765655 7899999999999999998888889998864 56778999999999999998653 7888764
Q ss_pred CCCcccccccCCceEEEecCch----hhHHHHHHHHHHcCCCcEEEEeC-CCCCCCCchHHHHHHHHhCCCeEEEeCCCC
Q 021126 155 GGLFPLAKQQTGEIELFLGNAG----TAMRPLTAAVTAAGGNLSYILDG-VPRMRERPIGDLVTGLKQLGADVDCILGTN 229 (317)
Q Consensus 155 ~~~~~~~~~~~~~~~i~~g~sg----ta~r~l~a~la~~~~~~~~~i~G-~~~l~~rpi~~l~~~L~~lGa~i~~~~~~~ 229 (317)
+. +. ...+++.+.+ +...+++++++. .+++.++.+ .... | ..+++.|++||+++++.++
T Consensus 288 ~~-l~-------~~~i~~~~~p~v~~D~~~~l~~~aa~--a~g~~~i~~~~~~~--r--~~~~~~L~~mG~~i~~~~~-- 351 (417)
T PRK09369 288 GR-LK-------AVDIKTAPYPGFPTDMQAQFMALLTQ--AEGTSVITETIFEN--R--FMHVPELIRMGADIEVDGH-- 351 (417)
T ss_pred CC-cc-------ceEEecCCCCCCHHHHHHHHHHHHHh--CCCeEEEEeccccc--H--HHHHHHHHHCCCeEEEECC--
Confidence 32 21 2244544433 443344454444 456677765 4432 2 3489999999999998653
Q ss_pred cccEEEEcCCCCCceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEcccccccchHHHHHHHHHHcCCEEE
Q 021126 230 CPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVE 300 (317)
Q Consensus 230 ~~Pi~I~g~~~l~g~~i~l~g~~ssq~~saLllaA~~a~G~~~I~~~~~~~s~~yv~~t~~~L~~lG~~v~ 300 (317)
. ++|+|.+.++|.+++. .+++.+|+++++|++++|+++|++.+. ..+.|.++ .+.|+++|++++
T Consensus 352 ~--l~i~g~~~l~g~~i~~---~D~r~am~~a~~a~~a~g~~~I~~~~~-v~rs~~~~-~~~l~~lG~~i~ 415 (417)
T PRK09369 352 T--AVVRGVEKLSGAPVMA---TDLRASASLVLAGLVAEGTTIVDRIYH-LDRGYERI-EEKLRALGADIE 415 (417)
T ss_pred E--EEEECCCCccccEEec---CcHHHHHHHHHHHHcCCCcEEECChhH-HhCCHHHH-HHHHHhCCCEEE
Confidence 4 8899854688888765 357888999999999999999998764 46778766 778999999986
No 29
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.78 E-value=3.8e-17 Score=170.73 Aligned_cols=237 Identities=20% Similarity=0.212 Sum_probs=169.2
Q ss_pred ccchhhhcccccccccCCceeEEEcCCCcee-eEEEecCCHHHH-HHHHHHHhhcCCcEEEeeCCCChhHHHHHHHHHHc
Q 021126 59 VRTVRASASVGTAEKQSKASEIVLQPIREIS-GTVTLPGSKSLS-NRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKL 136 (317)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~i~I~~~~~l~-G~v~ipgskS~a-~r~LlaAaLa~g~t~I~n~~~s~dv~~~l~~L~~l 136 (317)
...|+.+++... .+.....+++|++...++ +++++++.-++. ..+|++|++++|+++|.|....++ +++++|++|
T Consensus 429 ~~~L~~~Ga~i~-~~~~g~~pi~i~g~~~l~g~~~~l~~~ssq~~s~ll~aA~~~~g~~~i~~~~~~~~--~t~~~L~~~ 505 (735)
T PRK14806 429 AKPLREMGAVIE-TGEEGRPPLSIRGGQRLKGIHYDLPMASAQVKSCLLLAGLYAEGETSVTEPAPTRD--HTERMLRGF 505 (735)
T ss_pred HHHHHHCCCEEE-cCCCCcCCEEEECCCCccceEEeccCchHHHHHHHHHHHhccCCceEEecCcCCHH--HHHHHHHHC
Confidence 456677777653 333445678998753344 578888764444 356677888999999998866655 589999999
Q ss_pred CCEEEEcCCccEEEEEcCCCCcccccccCCceEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCchHHHHHHHH
Q 021126 137 GLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLK 216 (317)
Q Consensus 137 Ga~I~~~~~~~~l~V~g~~~~~~~~~~~~~~~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~rpi~~l~~~L~ 216 (317)
|++|++.++ .++|.|.+...+ ...-..+|...+++|+++++ .+ ....+++.+...-.. ...+++.|+
T Consensus 506 G~~i~~~~~--~i~I~g~~~~~~-------~~~~i~~D~~~a~~~~~~a~-~~-~g~~v~i~~~~~~~~--~~~~~~~L~ 572 (735)
T PRK14806 506 GYPVKVEGN--TISVEGGGKLTA-------TDIEVPADISSAAFFLVAAS-IA-EGSELTLEHVGINPT--RTGVIDILK 572 (735)
T ss_pred CCEEEecCC--EEEECCCccccC-------CeEEeCCCHHHHHHHHHHHH-hC-CCCEEEEccCCCCcc--hHHHHHHHH
Confidence 999998764 789987542221 12234678888887776643 32 235789988643222 356899999
Q ss_pred hCCCeEEEeCCC---Cc--ccEEEEcCCCCCceEEEeCCCCCH-HHHHHHHHHHhcCCCeEEEEEcccc--cccchHHHH
Q 021126 217 QLGADVDCILGT---NC--PPVRINGKGGLPGGKVKLSGKLSS-QYLTALLMAAPLALGNVEIEIIDKL--ISVPYVEMT 288 (317)
Q Consensus 217 ~lGa~i~~~~~~---~~--~Pi~I~g~~~l~g~~i~l~g~~ss-q~~saLllaA~~a~G~~~I~~~~~~--~s~~yv~~t 288 (317)
+||++++..++. +. .++.|++. .++|.+++.+..++- +..+.|+++|++++|+++|++..++ ++++++..+
T Consensus 573 ~mGa~i~~~~~~~~~g~~~~~i~v~~~-~l~~~~i~~~~~p~~~D~~p~la~~a~~a~G~s~i~~~~~lr~~EsdR~~~~ 651 (735)
T PRK14806 573 LMGADITLENEREVGGEPVADIRVRGA-RLKGIDIPEDQVPLAIDEFPVLFVAAACAEGRTVLTGAEELRVKESDRIQVM 651 (735)
T ss_pred HcCCEEEEcCcccccCCcceeEEEecC-CcccEEechHhCcchhhHHHHHHHHHHhCCCcEEEEChHHhccchhHHHHHH
Confidence 999999986531 10 14778875 789988765422211 5668899999999999999987664 577899888
Q ss_pred HHHHHHcCCEEEEeCCcceEEEecCC
Q 021126 289 LKLMERFGVFVEHSDSWDRFFIQGGQ 314 (317)
Q Consensus 289 ~~~L~~lG~~v~~~~d~~~i~I~G~~ 314 (317)
.+.|++||++++.++ +.+.|+|++
T Consensus 652 ~~~L~~lG~~i~~~~--~~l~i~g~~ 675 (735)
T PRK14806 652 ADGLKTLGIDCEPTP--DGIIIEGGI 675 (735)
T ss_pred HHHHHHcCCEEEEeC--CeEEEECCC
Confidence 999999999999987 489999863
No 30
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
Probab=99.78 E-value=1.8e-16 Score=154.86 Aligned_cols=228 Identities=17% Similarity=0.205 Sum_probs=157.8
Q ss_pred cchhhhcccccccccCCceeEEEcCCCcee-eEEEec-CCHHHHHHHHHHHhhcCCcEEEeeCCCChhHHHHHHHHHHcC
Q 021126 60 RTVRASASVGTAEKQSKASEIVLQPIREIS-GTVTLP-GSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLG 137 (317)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~i~I~~~~~l~-G~v~ip-gskS~a~r~LlaAaLa~g~t~I~n~~~s~dv~~~l~~L~~lG 137 (317)
..++.+++..+ ... ..+.|++..++. ++++++ ++...+.++|++++++++.++|.|....+|+..++++|++||
T Consensus 128 ~~L~~~G~~v~--~~~--~~~~v~~~~~l~~~~~~l~~~~s~~~~~ll~aa~~~~~~~~i~~~~~~~~i~~~~~~L~~~G 203 (416)
T TIGR01072 128 KGLKALGAEIV--IED--GYVYASAKGRLVGAHIVLDKVSVGATENIIMAAVLAEGTTVIENAAREPEIVDLCEFLNKMG 203 (416)
T ss_pred HHHHHCCCEEE--EEC--CEEEEEecCcceeeEEecCCCCHHHHHHHHHHHHhCCCcEEEecCCcCcCHHHHHHHHHHCC
Confidence 34555554432 112 234444433454 478888 555556788888889999999999877789999999999999
Q ss_pred CEEEEcCCccEEEEEcCCCCcccccccCCceEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCchHHHHHHHHh
Q 021126 138 LNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQ 217 (317)
Q Consensus 138 a~I~~~~~~~~l~V~g~~~~~~~~~~~~~~~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~rpi~~l~~~L~~ 217 (317)
++|+..++ ..+.|.|.+.... ...-..+|...+++++++++ ++ ++++.|.|.. .+++..+++.|++
T Consensus 204 ~~v~~~~~-~~l~I~g~~~~~~-------~~~~v~~D~~~a~~~l~a~~-l~--~g~~~i~~~~---~~~~~~~~~~L~~ 269 (416)
T TIGR01072 204 AKITGAGS-NTITIEGVEKLHG-------TEHSVIPDRIEAGTFLVAAA-IT--GGEITIKNVR---PDHLRAVLAKLRE 269 (416)
T ss_pred CEEEEcCC-CEEEEeCCCcccC-------cEEEEcCCHHHHHHHHHHHH-Hc--CCeEEEEecC---chHHHHHHHHHHH
Confidence 99985433 4899988542211 11222466665665655543 32 4788887753 5667789999999
Q ss_pred CCCeEEEeCCCCcccEEEEcC-CCCCceEEEeCCCC--CHHHHHHHHHHHhcCCCeEEEEEcccccccchHHHHHHHHHH
Q 021126 218 LGADVDCILGTNCPPVRINGK-GGLPGGKVKLSGKL--SSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMER 294 (317)
Q Consensus 218 lGa~i~~~~~~~~~Pi~I~g~-~~l~g~~i~l~g~~--ssq~~saLllaA~~a~G~~~I~~~~~~~s~~yv~~t~~~L~~ 294 (317)
||++|+..+ +. +.|.+. +.+++.+++....+ ..++.+.|+++|++++|+++|.+. .. .+++. ++++|++
T Consensus 270 ~G~~v~~~~--~~--i~v~~~~~~l~~~~i~~~~~p~v~~D~~~~l~~la~~a~g~~~i~~~--~~-~~r~~-~~~~L~~ 341 (416)
T TIGR01072 270 IGAEVEVDE--NG--IRVDMRQKRLKAVDIETLPYPGFPTDLQAQFMALLSQAEGTSVITET--VF-ENRFM-HVDELIR 341 (416)
T ss_pred CCCEEEEcC--CE--EEEEecCCCcceeEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEee--ec-ccHHH-HHHHHHH
Confidence 999999754 33 778754 36888888733222 136677777788899999999863 22 36766 4899999
Q ss_pred cCCEEEEeCCcceEEEecCCC
Q 021126 295 FGVFVEHSDSWDRFFIQGGQK 315 (317)
Q Consensus 295 lG~~v~~~~d~~~i~I~G~~~ 315 (317)
||++++..+ +.++|+|+++
T Consensus 342 ~Ga~i~~~~--~~l~i~g~~~ 360 (416)
T TIGR01072 342 MGANIKLEG--NTAVIHGVEQ 360 (416)
T ss_pred CCCeEEEEC--CEEEEECCCC
Confidence 999999887 4899998543
No 31
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This enzyme is of interest as a potential target for anti-bacterial agents. The only other known enolpyruvyl transferase is the related 5-enolpyruvylshikimate-3-phosphate synthase.
Probab=99.75 E-value=2.7e-16 Score=152.95 Aligned_cols=213 Identities=20% Similarity=0.277 Sum_probs=150.2
Q ss_pred eeEEEcCCCceeeEEEecCCHHHHH--HHHHHHhhcC--C--cEEEee--CCCChhHHHHHHHHHHcCCEEEEcCCccEE
Q 021126 78 SEIVLQPIREISGTVTLPGSKSLSN--RILLLAALSE--G--TTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFAMKRA 149 (317)
Q Consensus 78 ~~i~I~~~~~l~G~v~ipgskS~a~--r~LlaAaLa~--g--~t~I~n--~~~s~dv~~~l~~L~~lGa~I~~~~~~~~l 149 (317)
++++|++... . .+.+|++.+.+. .++++++++. + .+++++ -...+.++.++++|++||++|++.++ .+
T Consensus 59 ~~~~I~~~~~-~-~~~~~~~~~~~~~t~~~~~~~l~~~~~~~~~~~~g~~~l~~rp~~~~~~~L~~lG~~i~~~~~--~~ 134 (400)
T cd01555 59 NTLVIDASNI-N-STEAPYELVRKMRASILVLGPLLARFGEARVSLPGGCAIGARPVDLHLKGLEALGAKIEIEDG--YV 134 (400)
T ss_pred CEEEEECCCC-C-CCcCCHHHHhhhhhHHHHHHHHhcCCCceEEEEcCCCccccCCHHHHHHHHHHCCCEEEEeCC--EE
Confidence 5788877532 2 567888777632 2334444433 3 334433 23356788999999999999998764 67
Q ss_pred EEEcCCCCcccccccCCceEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCchHHHHHHHHhCCCeEEEeCCCC
Q 021126 150 IVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTN 229 (317)
Q Consensus 150 ~V~g~~~~~~~~~~~~~~~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~rpi~~l~~~L~~lGa~i~~~~~~~ 229 (317)
.|++.+ ..... ...++.+++++..++++++ +. .++.+.|.+. .+++++..+++.|++||++++..+
T Consensus 135 ~v~~~~-~~~~~-----~~~i~~~~~~~~~~ll~aa-~~--~~g~~~i~~~--~~~~~i~~~~~~L~~~G~~v~~~~--- 200 (400)
T cd01555 135 EAKAAG-RLKGA-----RIYLDFPSVGATENIMMAA-VL--AEGTTVIENA--AREPEIVDLANFLNKMGAKIEGAG--- 200 (400)
T ss_pred EEecCC-Cccce-----EEECCCCCHHHHHHHHHHH-Hh--CCCeEEEecc--cCCccHHHHHHHHHHCCCEEEEcC---
Confidence 776422 12211 3456667888888888775 33 4678888886 355678889999999999998632
Q ss_pred cccEEEEcCCCCCceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEcccccccchHHHHHHHHHHcCCEEEEeCCcceEE
Q 021126 230 CPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFF 309 (317)
Q Consensus 230 ~~Pi~I~g~~~l~g~~i~l~g~~ssq~~saLllaA~~a~G~~~I~~~~~~~s~~yv~~t~~~L~~lG~~v~~~~d~~~i~ 309 (317)
..++.|.|++.+++.++.+++| +..++++++++++++|+++|.+.. .++++.+++.|++||++|+..+ +.+.
T Consensus 201 ~~~i~I~g~~~l~~~~~~~~~D--~~~a~~~l~aa~~~~g~~~i~~~~----~~~~~~~~~~L~~~G~~i~~~~--~~i~ 272 (400)
T cd01555 201 TDTIRIEGVERLHGAEHTVIPD--RIEAGTFLVAAAITGGDITVENVI----PEHLEAVLAKLREMGAKIEIGE--DGIR 272 (400)
T ss_pred CceEEEeCCCCCCCcEEEecCC--HHHHHHHHHHHHHhCCcEEEeCCC----hhHHHHHHHHHHHCCCEEEEcC--CEEE
Confidence 2358999864688888888765 455677888999999999998542 4566788999999999999876 4899
Q ss_pred EecCC-CC
Q 021126 310 IQGGQ-KY 316 (317)
Q Consensus 310 I~G~~-~~ 316 (317)
|.|.+ +|
T Consensus 273 i~~~~~~l 280 (400)
T cd01555 273 VDGDGGRL 280 (400)
T ss_pred EEcCCCCc
Confidence 98764 44
No 32
>cd01553 EPT_RTPC-like This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC). These 2 families differ in that EPT is formed by 3 repeats of an alpha-beta structural domain while RTPC has 3 similar repeats with a 4th slightly different domain inserted between the 2nd and 3rd repeat. They evidently share the same active site location, although the catalytic residues differ.
Probab=99.32 E-value=8.7e-11 Score=105.12 Aligned_cols=177 Identities=16% Similarity=0.144 Sum_probs=115.0
Q ss_pred cCCHHHHHHHHHHHhhcCCcEEEeeCCCChh-------HHHHHHHHHHc-CCEEEEcCC-ccEEEEEcCCCCcccccccC
Q 021126 95 PGSKSLSNRILLLAALSEGTTVVDNLLSSED-------IHHMLDALKKL-GLNVEEDFA-MKRAIVEGCGGLFPLAKQQT 165 (317)
Q Consensus 95 pgskS~a~r~LlaAaLa~g~t~I~n~~~s~d-------v~~~l~~L~~l-Ga~I~~~~~-~~~l~V~g~~~~~~~~~~~~ 165 (317)
.||.|.+..+|++|++++++++|+|+...+. ...++++|++| |+++++.+. ...+.+.+.. ....
T Consensus 7 ~~d~s~a~~~lala~l~g~~i~I~~i~~~~~~pgl~q~~~~~l~~L~~~~G~~i~~~~~~~~~i~~~p~~-l~g~----- 80 (211)
T cd01553 7 KGGGQILRSFLVLAAISGGPITVTGIRPDRAKPGLLRQHLTFLKALEKICGATVEGGELGSDRISFRPGT-VRGG----- 80 (211)
T ss_pred CCChHHHHHHHHHHHHcCCCEEEEEeccCCCCccccHHHHHHHHHHHHHcCCeEEeeecCCceEEEeCCC-ccce-----
Confidence 4899999999999999988999998765432 56789999999 999987521 1367776421 1111
Q ss_pred CceEEEec---CchhhHHHHHHHHHHcCCCcEEEEeCCCCCCC----Cc---hHHHHHHHHhCCCeEEEeCCC-Cccc--
Q 021126 166 GEIELFLG---NAGTAMRPLTAAVTAAGGNLSYILDGVPRMRE----RP---IGDLVTGLKQLGADVDCILGT-NCPP-- 232 (317)
Q Consensus 166 ~~~~i~~g---~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~----rp---i~~l~~~L~~lGa~i~~~~~~-~~~P-- 232 (317)
....++. ..+.....++++++. .++++.|++...++. +. ...++..|++||++++...+. ++.|
T Consensus 81 -~i~~~~~s~g~~~d~~~~l~~la~~--a~g~s~i~~~g~tr~~~~~~e~~r~~~~~~~L~k~G~~~~~~~~~~~~~~~g 157 (211)
T cd01553 81 -DVRFAIGSAGSCTDVLQTILPLLLF--AKGPTRLTVTGGTDNPSAPPADFIRFVLEPELAKIGAHQEETLLRHGFYPAG 157 (211)
T ss_pred -EEEeccCCcccHHHHHHHHHHHHHh--CCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHcCCcceeeeeeeeeccCC
Confidence 1222222 234455555555443 567778887776655 32 345789999999998754421 1111
Q ss_pred -----EEEEcCCCCCceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEcccccccchHHHHHHHHHH
Q 021126 233 -----VRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMER 294 (317)
Q Consensus 233 -----i~I~g~~~l~g~~i~l~g~~ssq~~saLllaA~~a~G~~~I~~~~~~~s~~yv~~t~~~L~~ 294 (317)
++|.+...+++.++ +.+|++++++ ++++|.+.+ +.++.|++++. .|+.
T Consensus 158 ~g~~~~~i~g~~~l~~~~~--------R~~m~~~~~~----~~~~i~~~~-~v~~s~p~f~~-~l~~ 210 (211)
T cd01553 158 GGVVATEVSPVEKLNTAQL--------RQLVLPMLLA----SGAVEFTVA-HPSCHLLTNFA-VLEA 210 (211)
T ss_pred CCccEEEEcCCcccccccH--------HHHHHHHHHC----CCeEecCCC-ccccCCccHHH-Hhhc
Confidence 55555323444332 6777777666 778998764 67899998744 5654
No 33
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]
Probab=99.25 E-value=6.1e-11 Score=114.74 Aligned_cols=236 Identities=17% Similarity=0.185 Sum_probs=159.1
Q ss_pred chhhhcccccccccCCceeEEEcCCCce-eeEEEecCCHHHH--HHHHHHHhhcCCcEEEee---CCCC-hhHHHHHHHH
Q 021126 61 TVRASASVGTAEKQSKASEIVLQPIREI-SGTVTLPGSKSLS--NRILLLAALSEGTTVVDN---LLSS-EDIHHMLDAL 133 (317)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~i~I~~~~~l-~G~v~ipgskS~a--~r~LlaAaLa~g~t~I~n---~~~s-~dv~~~l~~L 133 (317)
.+|.-++...-....+-+++.+.-..-+ .|.|.+.|+.|++ ...|++|.++.|.++|.- -+.| ++++.++++|
T Consensus 232 ~l~q~GadI~~~~~t~~~p~dv~~~~~~~gg~v~l~g~Vssqy~~~~lm~ap~a~g~vt~~~vdgk~iS~pyv~mt~~lm 311 (595)
T KOG0692|consen 232 GLKQLGADIECTLGTNCPPVDVNANGGLPGGKVKLSGSVSSQYLTALLMCAPLALGDVTIEIVDGKLISVPYVEMTLKLM 311 (595)
T ss_pred HHHhcCCceEEeccCCCCceeeeccCCCcCceeeeeeeehhhHHHHHHHhhhhcCCceEEEeecCccccccchhHHHHHH
Confidence 4444444332222233455555433333 5688999999988 578889999999998863 3444 6899999999
Q ss_pred HHcCCEEEEcCCccEEEEEcCCCCcccccccCCceEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCchHHHHH
Q 021126 134 KKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVT 213 (317)
Q Consensus 134 ~~lGa~I~~~~~~~~l~V~g~~~~~~~~~~~~~~~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~rpi~~l~~ 213 (317)
+.||++++..+....+.+.+++ .+..| ...+..+|++++.||++.+ +.++ ..+++.|......+.+..+.+
T Consensus 312 e~fgvn~~~s~~~~~~y~i~g~-~y~~p-----~~~~ve~dAssa~yfla~a-a~tg--~~~tV~~~g~~Slqgda~Fa~ 382 (595)
T KOG0692|consen 312 ERFGVNVEHSTSWDRFYVIGGQ-KYKSP-----GNAYVEGDASSASYFLAGA-AITG--ETVTVEGCGTTSLQGDAKFAE 382 (595)
T ss_pred HHhCcCeEecCCCcceEeccCc-ccCCC-----CCceeecccccccccceee-eEec--ceeeeccccceecccccchHh
Confidence 9999999976543333343433 23333 3456678999999998665 4433 577788888888899899999
Q ss_pred HHHhCCCeEEEeCCCCcccEEEEcCC-------CCCceEEEeCCCCCHHHHHHHHHHHhcC-----CCeEEEEEccc--c
Q 021126 214 GLKQLGADVDCILGTNCPPVRINGKG-------GLPGGKVKLSGKLSSQYLTALLMAAPLA-----LGNVEIEIIDK--L 279 (317)
Q Consensus 214 ~L~~lGa~i~~~~~~~~~Pi~I~g~~-------~l~g~~i~l~g~~ssq~~saLllaA~~a-----~G~~~I~~~~~--~ 279 (317)
.|+.||+.+....+ . +++.|+. .++..++...+ . +..+.+.+.|.++ .++++|+++.. .
T Consensus 383 vl~pmgc~v~qt~~--s--vtv~gp~~ga~~~~~lr~iD~m~~m-~--d~~~t~svvA~~~~~~s~gdptti~~~as~rv 455 (595)
T KOG0692|consen 383 VLEPMGCKVSQTEN--S--VTVTGPPRGAFGMRHLRAIDVMNKM-P--DVAMTLSVVALFAGLRSSGDPTTIRDVASWRV 455 (595)
T ss_pred hhccccceeeeecc--c--ccccCCCCCcccceehhhhcccccc-c--chhHhHhHHHHhhcccCCCCCcccccccchhH
Confidence 99999999988764 2 6666651 11222221121 1 2333455556666 77899997755 3
Q ss_pred cccchHHHHHHHHHHcCCEEEEeCCcceEEEecCC
Q 021126 280 ISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ 314 (317)
Q Consensus 280 ~s~~yv~~t~~~L~~lG~~v~~~~d~~~i~I~G~~ 314 (317)
++..++-.++.+|++||+.+++.+| .+.|.+..
T Consensus 456 ket~r~ia~~~el~klg~~~~E~~d--g~~v~~~~ 488 (595)
T KOG0692|consen 456 KETERMIAICTELRKLGATVEEGSD--GYCVITPP 488 (595)
T ss_pred HHHHHHHHHHHHHHHhcccccccCc--eEEEeCCc
Confidence 5667777788999999999998884 78887754
No 34
>cd01553 EPT_RTPC-like This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC). These 2 families differ in that EPT is formed by 3 repeats of an alpha-beta structural domain while RTPC has 3 similar repeats with a 4th slightly different domain inserted between the 2nd and 3rd repeat. They evidently share the same active site location, although the catalytic residues differ.
Probab=99.09 E-value=3.3e-09 Score=94.92 Aligned_cols=137 Identities=14% Similarity=0.097 Sum_probs=98.9
Q ss_pred cCchhhHHHHHHHHHHcCCCcEEEEeCCCCCCC-----CchHHHHHHHHhC-CCeEEEeCC-CCcccEEEEcCCCCCceE
Q 021126 173 GNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRE-----RPIGDLVTGLKQL-GADVDCILG-TNCPPVRINGKGGLPGGK 245 (317)
Q Consensus 173 g~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~-----rpi~~l~~~L~~l-Ga~i~~~~~-~~~~Pi~I~g~~~l~g~~ 245 (317)
+|...+.+++++ ++++ ++++.|+|...-+. ++...+++.|++| |++++..+. .+. +.+... .++|++
T Consensus 8 ~d~s~a~~~lal-a~l~--g~~i~I~~i~~~~~~pgl~q~~~~~l~~L~~~~G~~i~~~~~~~~~--i~~~p~-~l~g~~ 81 (211)
T cd01553 8 GGGQILRSFLVL-AAIS--GGPITVTGIRPDRAKPGLLRQHLTFLKALEKICGATVEGGELGSDR--ISFRPG-TVRGGD 81 (211)
T ss_pred CChHHHHHHHHH-HHHc--CCCEEEEEeccCCCCccccHHHHHHHHHHHHHcCCeEEeeecCCce--EEEeCC-CccceE
Confidence 344455545544 4453 46799998765454 4578899999999 999987521 123 777754 689988
Q ss_pred EEeCCCC---CHHHHHHHHHHHhcCCCeEEEEEcccc------cccchHHHHHHHHHHcCCEEEEeCC----------cc
Q 021126 246 VKLSGKL---SSQYLTALLMAAPLALGNVEIEIIDKL------ISVPYVEMTLKLMERFGVFVEHSDS----------WD 306 (317)
Q Consensus 246 i~l~g~~---ssq~~saLllaA~~a~G~~~I~~~~~~------~s~~yv~~t~~~L~~lG~~v~~~~d----------~~ 306 (317)
++++... .+++++.|+++|++++|+++|++...+ ++.+++..++.+|++||++++...+ ..
T Consensus 82 i~~~~~s~g~~~d~~~~l~~la~~a~g~s~i~~~g~tr~~~~~~e~~r~~~~~~~L~k~G~~~~~~~~~~~~~~~g~g~~ 161 (211)
T cd01553 82 VRFAIGSAGSCTDVLQTILPLLLFAKGPTRLTVTGGTDNPSAPPADFIRFVLEPELAKIGAHQEETLLRHGFYPAGGGVV 161 (211)
T ss_pred EEeccCCcccHHHHHHHHHHHHHhCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHcCCcceeeeeeeeeccCCCCcc
Confidence 8876321 367899999999999999999988752 4557788889999999999987652 01
Q ss_pred eEEEecCCC
Q 021126 307 RFFIQGGQK 315 (317)
Q Consensus 307 ~i~I~G~~~ 315 (317)
.++|.|.+.
T Consensus 162 ~~~i~g~~~ 170 (211)
T cd01553 162 ATEVSPVEK 170 (211)
T ss_pred EEEEcCCcc
Confidence 677777543
No 35
>PF01137 RTC: RNA 3'-terminal phosphate cyclase; InterPro: IPR023797 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. ; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=96.95 E-value=0.05 Score=49.38 Aligned_cols=186 Identities=19% Similarity=0.205 Sum_probs=98.6
Q ss_pred HHHHHHhhcCCcEEEeeCCCCh-------hHHHHHHHHHHc-CCEEEEc-CCccEEEEEcCCCCcccccccCCceEEEec
Q 021126 103 RILLLAALSEGTTVVDNLLSSE-------DIHHMLDALKKL-GLNVEED-FAMKRAIVEGCGGLFPLAKQQTGEIELFLG 173 (317)
Q Consensus 103 r~LlaAaLa~g~t~I~n~~~s~-------dv~~~l~~L~~l-Ga~I~~~-~~~~~l~V~g~~~~~~~~~~~~~~~~i~~g 173 (317)
..|.+|++++.+++|.|.-..+ .=...++++.++ +++++.. ..+..+...+.. .... ....|++
T Consensus 15 ~~laLS~l~gkpi~I~~IR~~r~~PGL~~qh~~~l~ll~~it~g~~~g~~~~st~l~f~Pg~--i~~g-----~~~~d~~ 87 (228)
T PF01137_consen 15 TALALSALTGKPIRIENIRANRPNPGLRPQHLSALRLLAKITNGSVIGISLGSTELTFRPGE--IRGG-----DYTFDCG 87 (228)
T ss_dssp HHHHHHHHHT--EEEESTTTTSSS-S--HHHHHHHHHHHHHCCSEEEEESTTSSEEEEE--E--E-EC-----EEEEEEE
T ss_pred HHHHHHhccCCCEEEEEEecCCCCCcccHHHHHHHHHHHHhcCCeecceecCCcEEEEECCC--ccCC-----cEEEecC
Confidence 4678899999999999864332 223467777775 5666543 222466666532 1111 4578889
Q ss_pred CchhhHHHHHHHHHHc---CCCcEEEEeCCCCCCCCc-hH----HHHHHHHhCCCeEEEeCC-CCccc-------EEEEc
Q 021126 174 NAGTAMRPLTAAVTAA---GGNLSYILDGVPRMRERP-IG----DLVTGLKQLGADVDCILG-TNCPP-------VRING 237 (317)
Q Consensus 174 ~sgta~r~l~a~la~~---~~~~~~~i~G~~~l~~rp-i~----~l~~~L~~lGa~i~~~~~-~~~~P-------i~I~g 237 (317)
.+++..+++-+++.++ ..+.++.++|+.....-| ++ .++-.|++||++.+.+-. .|+.| +.+..
T Consensus 88 tagsi~l~lq~llp~~~f~~~~~~l~l~GgT~~~~~psvd~~~~v~lP~l~~~G~~~~l~i~krG~~P~GgGeV~~~v~p 167 (228)
T PF01137_consen 88 TAGSISLVLQALLPLLLFAKGPSRLTLTGGTNVPFSPSVDYIRQVFLPLLRKFGIPVELKIIKRGFYPKGGGEVQLRVPP 167 (228)
T ss_dssp TTCBHHHHHHHHCCCHCCSSSEEEEEEEEBSBBTTS--HHHHHHTCHHHHHHCT-ECEEEEEE--BTTTB-EEEEEEEE-
T ss_pred CCceeeeeHHHHHHHHHhcCCCEEEEEEEecCCCCCCCHHHHHHHHHHHHHHcCCCcEEEEEEeccCCCCCeEEEEEEEc
Confidence 9988888766654321 234577899986555444 22 246678999987653210 13333 12221
Q ss_pred CCCCCceEEEeCCCCCHHHHHHHHHHHhcCCCe-EEEEEcccccccchHHHHHHHHHHc-CCEEEEe
Q 021126 238 KGGLPGGKVKLSGKLSSQYLTALLMAAPLALGN-VEIEIIDKLISVPYVEMTLKLMERF-GVFVEHS 302 (317)
Q Consensus 238 ~~~l~g~~i~l~g~~ssq~~saLllaA~~a~G~-~~I~~~~~~~s~~yv~~t~~~L~~l-G~~v~~~ 302 (317)
...+++.. +-.+.-...-+++-.++++|+ ++|+.. + -.+|....+..+++| |++.+.+
T Consensus 168 ~~~l~~i~----g~vD~~~qdqll~~mALa~g~vS~i~~g-~--lt~h~~t~l~vi~~fl~v~f~v~ 227 (228)
T PF01137_consen 168 VKPLKPID----GCVDEHLQDQLLLFMALAKGDVSRIRVG-P--LTLHTVTNLRVIEQFLGVKFKVE 227 (228)
T ss_dssp SSS---EE----CSS-HHHHHHHHHHHHCCTSSEEEEEES-C--SSHHHHHHHHHHHHHCS-EEEE-
T ss_pred cccccccc----hhhhhhhHHHHHHHHHhCCCCceEEEec-C--CCHHHHHHHHHHHHHcCcEEEEe
Confidence 11122211 222333333355556678885 688853 2 345666677788886 7666554
No 36
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=96.26 E-value=0.042 Score=52.18 Aligned_cols=119 Identities=18% Similarity=0.296 Sum_probs=75.5
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCCCCCCCc--hHHHHHHH---HhC-CCeEEEeCCCCcccEEEEcCCCCCceEEEeC---
Q 021126 179 MRPLTAAVTAAGGNLSYILDGVPRMRERP--IGDLVTGL---KQL-GADVDCILGTNCPPVRINGKGGLPGGKVKLS--- 249 (317)
Q Consensus 179 ~r~l~a~la~~~~~~~~~i~G~~~l~~rp--i~~l~~~L---~~l-Ga~i~~~~~~~~~Pi~I~g~~~l~g~~i~l~--- 249 (317)
+|..+++.+++ ..++.|.|.-.-|.+| ...++.++ +++ +++++..+- +..-+...++ .++|+++.++
T Consensus 17 lRtal~LS~lt--G~pvrI~nIRa~R~~PGL~~QHltaVra~~~i~~a~v~G~e~-GS~~l~F~Pg-~i~gG~~~~digT 92 (341)
T COG0430 17 LRTALALSALT--GKPVRIENIRAGRANPGLKRQHLTAVRAAAEICNAEVEGAEL-GSTELVFRPG-KIRGGDYRVDIGT 92 (341)
T ss_pred ehHHHHHHHhc--CCceEEEEEccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeec-cceEEEEecc-ceeCceEEEEecC
Confidence 34555555554 3688888886666666 23344444 443 777765432 3222555554 7888876654
Q ss_pred -CCCCHHHHHHHHHHHhcCCCeEEEEEccc--c---cccchH-HHHHHHHHHcCCEEEEe
Q 021126 250 -GKLSSQYLTALLMAAPLALGNVEIEIIDK--L---ISVPYV-EMTLKLMERFGVFVEHS 302 (317)
Q Consensus 250 -g~~ssq~~saLllaA~~a~G~~~I~~~~~--~---~s~~yv-~~t~~~L~~lG~~v~~~ 302 (317)
|.. .-++-+||.++++++++++|+..+- . ...||+ ..++..|+++|+.++..
T Consensus 93 AGsi-~LvlQtlLp~~~fa~~~~~i~v~GGTdv~~aP~vDyir~v~lp~L~k~G~~~~l~ 151 (341)
T COG0430 93 AGSI-TLVLQTLLPLLLFADGPSRITVTGGTDVPWAPPVDYIRRVTLPVLRKMGIECELE 151 (341)
T ss_pred CCce-eeeHHHHHHHhhcCCCCeEEEEECccCCCCCCCcchhhhhHHHHHHhhccceEEE
Confidence 322 3556689999999999988875432 2 244665 55678999999988754
No 37
>cd00295 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond. The enzymes are conserved in eucaryotes, bacteria and archaea. The exact biological role of this enzyme is unknown, but it has been proposed that it is likely to function in cellular RNA metabolism and processing. RNA phosphate cyclase has been characterized in human (with at least three isozymes), and E. coli, and it seems to be taxonomically widespread. The crystal structure of RNA phospate cyclase shows that it consists of two domains. The larger domain contains three repeats of a fold originally identified in the bacterial translation initiation factor IF3.
Probab=95.66 E-value=0.22 Score=47.88 Aligned_cols=121 Identities=14% Similarity=0.238 Sum_probs=76.5
Q ss_pred hhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCc-hH----HHHHHHHhC-CCeEEEeCCCCcccEEEEcCCCCCceEEEeC
Q 021126 176 GTAMRPLTAAVTAAGGNLSYILDGVPRMRERP-IG----DLVTGLKQL-GADVDCILGTNCPPVRINGKGGLPGGKVKLS 249 (317)
Q Consensus 176 gta~r~l~a~la~~~~~~~~~i~G~~~l~~rp-i~----~l~~~L~~l-Ga~i~~~~~~~~~Pi~I~g~~~l~g~~i~l~ 249 (317)
|..+|.-+++.+++ ..++.|.+.-.-|.+| ++ ..++.+.++ +++++..+. +..-++..++ .+.|+++.++
T Consensus 10 gQilR~alaLS~lt--gkpvrI~nIR~~r~~PGL~~qhl~~l~ll~~i~~g~~~g~~~-gst~l~F~Pg-~i~gG~~~~d 85 (338)
T cd00295 10 CEILRHALSLAMIS--GQPFRIEGIRADEADPGLKDQHLSALKAAEEICGASVEEAEL-GGQRFIFRPG-NIIGGDVRFA 85 (338)
T ss_pred hHHHHHHHHHHHhh--CCCEEEEEeccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeec-CceEEEEECC-cccCCeEEEe
Confidence 56677777777764 4678888765445555 22 345556665 666654322 2222666665 7888888775
Q ss_pred CC---CCHHHHHHHHHHHhcCCCeEEEEEcc--cc---cccchH-HHHHHHHHHcCCEEE
Q 021126 250 GK---LSSQYLTALLMAAPLALGNVEIEIID--KL---ISVPYV-EMTLKLMERFGVFVE 300 (317)
Q Consensus 250 g~---~ssq~~saLllaA~~a~G~~~I~~~~--~~---~s~~yv-~~t~~~L~~lG~~v~ 300 (317)
-. .-.-++-+++.++++++++++|+..+ +. .+.+|+ ..++..|++||+.++
T Consensus 86 ~gtagSi~l~lq~lLp~~~fa~~~~~l~l~GgT~~~~sPsvD~~~~v~lp~l~~~G~~~~ 145 (338)
T cd00295 86 CGSAGGCGLFLEPILIACLFADGPSRLELSGGTDNNEAIGADFIRRSLEPLLAKIFIHGD 145 (338)
T ss_pred CCCCcchHHHHHHHHHHHHhCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHHhCCccc
Confidence 21 12455668999999999987776443 22 245565 455678999999765
No 38
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=95.64 E-value=0.31 Score=46.63 Aligned_cols=123 Identities=19% Similarity=0.266 Sum_probs=75.9
Q ss_pred hhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCc-hH----HHHHHHHhC-CCeEEEeCCCCcccEEEEcCCCCCceEEEeC
Q 021126 176 GTAMRPLTAAVTAAGGNLSYILDGVPRMRERP-IG----DLVTGLKQL-GADVDCILGTNCPPVRINGKGGLPGGKVKLS 249 (317)
Q Consensus 176 gta~r~l~a~la~~~~~~~~~i~G~~~l~~rp-i~----~l~~~L~~l-Ga~i~~~~~~~~~Pi~I~g~~~l~g~~i~l~ 249 (317)
|..+|.-+++.+++ ..++.|.+.-.-|.+| ++ ..++.+.++ +++++..+. +..-++..++ .+.|+++..+
T Consensus 12 GQilR~alaLS~lt--gkpv~I~nIR~~R~~PGL~~qhl~~l~l~~~i~~a~~~g~~~-gst~l~F~Pg-~i~gG~~~~d 87 (326)
T TIGR03399 12 GQILRTALSLSALT--GKPVRIYNIRANRPKPGLAPQHLTAVKAAAEICNAEVEGAEL-GSTELEFIPG-KIRGGDYRFD 87 (326)
T ss_pred HHHHHHHHHHHHhh--CCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEeeeec-CceEEEEECC-CccCCeEEEe
Confidence 45677777777764 4678888765445555 22 245555554 566553332 2222666665 6888888775
Q ss_pred CC---CCHHHHHHHHHHHhcCCCeEEEEEcc--cc---cccchH-HHHHHHHHHcCCEEEEe
Q 021126 250 GK---LSSQYLTALLMAAPLALGNVEIEIID--KL---ISVPYV-EMTLKLMERFGVFVEHS 302 (317)
Q Consensus 250 g~---~ssq~~saLllaA~~a~G~~~I~~~~--~~---~s~~yv-~~t~~~L~~lG~~v~~~ 302 (317)
-. .-+-++-+++.++++++++++|+..+ +. .+.+|+ ..++..|++||++++.+
T Consensus 88 ~gtagSi~l~lq~lLp~l~f~~~p~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l~ 149 (326)
T TIGR03399 88 IGTAGSVTLVLQTLLPALLFANGPSRVTVSGGTDVPWAPPVDYLRNVFLPLLERMGIRAELE 149 (326)
T ss_pred CCCChhhHHHHHHHHHHHHhCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 21 12345668889999999987765443 22 245665 44567899999987643
No 39
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=95.44 E-value=0.42 Score=45.74 Aligned_cols=123 Identities=20% Similarity=0.267 Sum_probs=76.2
Q ss_pred hhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCc-h----HHHHHHHHhC-CCeEEEeCCCCcccEEEEcCCCCCceEEEeC
Q 021126 176 GTAMRPLTAAVTAAGGNLSYILDGVPRMRERP-I----GDLVTGLKQL-GADVDCILGTNCPPVRINGKGGLPGGKVKLS 249 (317)
Q Consensus 176 gta~r~l~a~la~~~~~~~~~i~G~~~l~~rp-i----~~l~~~L~~l-Ga~i~~~~~~~~~Pi~I~g~~~l~g~~i~l~ 249 (317)
|..+|.-+++.+++ ..++.|.+.-.-|.+| + -..++.+.++ +++++..+. +..-++..++ .+.|+++..+
T Consensus 10 gQilR~alaLS~lt--g~pv~I~nIR~~r~~PGL~~qh~~~l~ll~~i~~g~~~g~~~-gst~l~f~Pg-~i~gG~~~~d 85 (326)
T cd00874 10 GQILRTALALSAVT--GKPVRIVNIRANRSNPGLSRQHLTAVRAAARICNAEVEGAEL-GSTELEFEPG-KIKGGDYEFD 85 (326)
T ss_pred hHHHHHHHHHHHHh--CCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEeeeec-CceEEEEECC-CccCCcEEEe
Confidence 45677777776764 4678888765455555 2 2355556665 566653322 2222666665 7888887764
Q ss_pred CC---CCHHHHHHHHHHHhcCCCeEEEEEcc--cc---cccchH-HHHHHHHHHcCCEEEEe
Q 021126 250 GK---LSSQYLTALLMAAPLALGNVEIEIID--KL---ISVPYV-EMTLKLMERFGVFVEHS 302 (317)
Q Consensus 250 g~---~ssq~~saLllaA~~a~G~~~I~~~~--~~---~s~~yv-~~t~~~L~~lG~~v~~~ 302 (317)
-. .-+-++-+++..+++++++++|+..+ +. .+.+|+ ..++..|++||++++.+
T Consensus 86 ~~tagsi~l~lq~lLp~~~f~~~~~~l~l~GgT~~~~sPsvD~~~~v~lP~l~~~G~~~~l~ 147 (326)
T cd00874 86 IGTAGSITLVLQTLLPALLFADGPSTVTISGGTDVPWAPPIDYLRNVTLPLLERMGIEAELE 147 (326)
T ss_pred CCCCcchHHHHHHHHHHHhcCCCCEEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 21 12455668889999999987765433 32 244565 34566889999987643
No 40
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional
Probab=95.43 E-value=0.4 Score=46.18 Aligned_cols=123 Identities=19% Similarity=0.276 Sum_probs=76.6
Q ss_pred hhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCc-h-HH---HHHHHHhC-CCeEEEeCCCCcccEEEEcCCCCCceEEEeC
Q 021126 176 GTAMRPLTAAVTAAGGNLSYILDGVPRMRERP-I-GD---LVTGLKQL-GADVDCILGTNCPPVRINGKGGLPGGKVKLS 249 (317)
Q Consensus 176 gta~r~l~a~la~~~~~~~~~i~G~~~l~~rp-i-~~---l~~~L~~l-Ga~i~~~~~~~~~Pi~I~g~~~l~g~~i~l~ 249 (317)
|..+|.-+++.+++ ..++.|.+.-.-|.+| + .. .++.+.++ +++++.... +..-++..++ .+.|+++.++
T Consensus 14 gQilR~alaLS~lt--gkpv~I~nIR~~r~~PGL~~qhl~~l~l~~~i~~~~v~g~~~-gst~l~f~Pg-~i~~g~~~~d 89 (343)
T PRK04204 14 GQILRTALALSAIT--GKPFRITNIRANRPNPGLLRQHLTAVKAAAEICNAEVEGAEL-GSQELVFIPG-PIRGGDYRFD 89 (343)
T ss_pred HHHHHHHHHHHHhh--CCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEEeeec-CceEEEEECC-CccCCeEEEe
Confidence 45677777776664 4678888765455555 2 22 34555554 567654332 3222666665 7888887775
Q ss_pred CC---CCHHHHHHHHHHHhcCCCeEEEEEcc--cc---cccchH-HHHHHHHHHcCCEEEEe
Q 021126 250 GK---LSSQYLTALLMAAPLALGNVEIEIID--KL---ISVPYV-EMTLKLMERFGVFVEHS 302 (317)
Q Consensus 250 g~---~ssq~~saLllaA~~a~G~~~I~~~~--~~---~s~~yv-~~t~~~L~~lG~~v~~~ 302 (317)
-. .-.-++-+++..+++++++++|+..+ +. .+.+|+ ..++..|++||++++.+
T Consensus 90 ~~tagsi~l~lq~lLp~~~f~~~~~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l~ 151 (343)
T PRK04204 90 IGTAGSITLVLQTVLPALLFADGPSRVTITGGTDVPWAPPIDYIRRVTLPLLRRMGIEAEIE 151 (343)
T ss_pred cCCCcchhhHHHHHHHHHhcCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 21 12455668899999999987765443 22 244565 44567899999987754
No 41
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=95.06 E-value=0.81 Score=43.65 Aligned_cols=115 Identities=16% Similarity=0.177 Sum_probs=71.2
Q ss_pred HHHHHHhhcCCcEEEeeCCCC-------hhHHHHHHHHHH-cCCEEEEcCCc-cEEEEEcCCCCcccccccCCceEEEec
Q 021126 103 RILLLAALSEGTTVVDNLLSS-------EDIHHMLDALKK-LGLNVEEDFAM-KRAIVEGCGGLFPLAKQQTGEIELFLG 173 (317)
Q Consensus 103 r~LlaAaLa~g~t~I~n~~~s-------~dv~~~l~~L~~-lGa~I~~~~~~-~~l~V~g~~~~~~~~~~~~~~~~i~~g 173 (317)
..|.+|++++.+++|.|.-.. +.=...+++++. .+++++..+-. ..+...+.. .... ...+|++
T Consensus 19 tal~LS~ltG~pvrI~nIRa~R~~PGL~~QHltaVra~~~i~~a~v~G~e~GS~~l~F~Pg~--i~gG-----~~~~dig 91 (341)
T COG0430 19 TALALSALTGKPVRIENIRAGRANPGLKRQHLTAVRAAAEICNAEVEGAELGSTELVFRPGK--IRGG-----DYRVDIG 91 (341)
T ss_pred HHHHHHHhcCCceEEEEEccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeeccceEEEEeccc--eeCc-----eEEEEec
Confidence 578889999999999986442 222335555555 46777754321 245544432 1111 3466776
Q ss_pred CchhhHH---HHHHHHHHcCCCcEEEEeCCCCCCCCc-hH----HHHHHHHhCCCeEEE
Q 021126 174 NAGTAMR---PLTAAVTAAGGNLSYILDGVPRMRERP-IG----DLVTGLKQLGADVDC 224 (317)
Q Consensus 174 ~sgta~r---~l~a~la~~~~~~~~~i~G~~~l~~rp-i~----~l~~~L~~lGa~i~~ 224 (317)
.+++..+ .++.++..+.++.+++++|+.....-| ++ -++..|++||...+.
T Consensus 92 TAGsi~LvlQtlLp~~~fa~~~~~i~v~GGTdv~~aP~vDyir~v~lp~L~k~G~~~~l 150 (341)
T COG0430 92 TAGSITLVLQTLLPLLLFADGPSRITVTGGTDVPWAPPVDYIRRVTLPVLRKMGIECEL 150 (341)
T ss_pred CCCceeeeHHHHHHHhhcCCCCeEEEEECccCCCCCCCcchhhhhHHHHHHhhccceEE
Confidence 5555443 455555544567788999987665555 22 378899999987764
No 42
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes. They lack a conserved catalytic histidine residue required for cyclase activity, so probably do not function as cyclases. They are believed to play a role in ribosomal RNA processing and assembly.
Probab=94.90 E-value=0.63 Score=44.79 Aligned_cols=119 Identities=18% Similarity=0.228 Sum_probs=74.3
Q ss_pred hhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCc-hH----HHHHHHHhC-CCeEEEeCCCCcccEEEEcCCCCCceEEEeC
Q 021126 176 GTAMRPLTAAVTAAGGNLSYILDGVPRMRERP-IG----DLVTGLKQL-GADVDCILGTNCPPVRINGKGGLPGGKVKLS 249 (317)
Q Consensus 176 gta~r~l~a~la~~~~~~~~~i~G~~~l~~rp-i~----~l~~~L~~l-Ga~i~~~~~~~~~Pi~I~g~~~l~g~~i~l~ 249 (317)
|..+|..+++.+++ ..++.|.+.-.-+.+| +. ..++.+.++ ++.++..+. +..-+...++ .+.|+++..+
T Consensus 10 gQilR~alaLS~lt--gkpv~I~nIR~~r~~PGL~~qhl~~l~ll~~it~g~~~g~~~-gst~l~F~PG-~i~gG~~~~d 85 (341)
T cd00875 10 SNFFRQRLVLATLS--GKPIIIKKIRSDDTNPGLRDHEVSFLRLLEKVTNGSVIEISY-TGTTLIYKPG-LITGGVLNHD 85 (341)
T ss_pred HHHHHHHHHHHHhc--CCCEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcEEeeec-CceEEEEECC-CccCCcEEEe
Confidence 56778877877764 4678887764445555 22 355666665 666553332 2222666665 6888877765
Q ss_pred CC---CCHHHHHHHHHHHhcCCCeEEEEEc--ccc---cccchH-HHHHHHHHHcCCE
Q 021126 250 GK---LSSQYLTALLMAAPLALGNVEIEII--DKL---ISVPYV-EMTLKLMERFGVF 298 (317)
Q Consensus 250 g~---~ssq~~saLllaA~~a~G~~~I~~~--~~~---~s~~yv-~~t~~~L~~lG~~ 298 (317)
-. .-+-++-+++.++++++++++|+.. .+. .+.||+ ..++..|++||+.
T Consensus 86 ~gtagSI~l~Lq~lLp~~~f~~~p~~l~l~GgT~~~~spsvD~~~~v~lP~l~~fG~~ 143 (341)
T cd00875 86 CPVSRGIGYFLEPLLLLAPFGKKPLSITLKGITNSTGDPSVDSIRTATLPLLKKFGIP 143 (341)
T ss_pred CCCCcchHHHHHHHHHHHhhCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 21 1256777899999999997766543 332 244555 3456679999994
No 43
>TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Members of this strictly eukaryotic protein family are not RNA 3'-phosphate cyclase (6.5.1.4), but rather a homolog with a distinct function, found in the nucleolus and required for ribosomal RNA processing. Homo sapiens has both a member of this RCL (RNA terminal phosphate cyclase like) family and EC 6.5.1.4, while Saccharomyces has a member of this family only.
Probab=94.76 E-value=1.8 Score=42.01 Aligned_cols=115 Identities=17% Similarity=0.075 Sum_probs=72.1
Q ss_pred HHHHHHhhcCCcEEEeeCCCC-------hhHHHHHHHHHHc-CCEEEEcCC-ccEEEEEcCCCCcccccccCCceEEEec
Q 021126 103 RILLLAALSEGTTVVDNLLSS-------EDIHHMLDALKKL-GLNVEEDFA-MKRAIVEGCGGLFPLAKQQTGEIELFLG 173 (317)
Q Consensus 103 r~LlaAaLa~g~t~I~n~~~s-------~dv~~~l~~L~~l-Ga~I~~~~~-~~~l~V~g~~~~~~~~~~~~~~~~i~~g 173 (317)
..|.++++++.+++|+|.-.. +.=...++++.++ ++++..... +.+++..+... .. . ....|++
T Consensus 11 ~alaLS~itgkpv~I~nIR~~R~~PGL~~qhl~~l~l~~~i~~a~~~g~~~gst~l~F~Pg~i-~g-G-----~~~~d~g 83 (360)
T TIGR03400 11 QRLVLSTLSGKPVRITKIRSDDENPGLRDYEVSFLRLLEKVTNGSKIEISYTGTTVIYKPGLI-TG-G-----SVTHECP 83 (360)
T ss_pred HHHHHHHhcCCCEEEEEeccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeecCceEEEEECCcc-cC-C-----eEEEeCC
Confidence 467889999999999986432 2223466777776 677664322 13566665431 11 1 3578888
Q ss_pred CchhhHHHH---HHHHHHcCCCcEEEEeCCCCCCCCc-hH----HHHHHHHhCCC---eEEE
Q 021126 174 NAGTAMRPL---TAAVTAAGGNLSYILDGVPRMRERP-IG----DLVTGLKQLGA---DVDC 224 (317)
Q Consensus 174 ~sgta~r~l---~a~la~~~~~~~~~i~G~~~l~~rp-i~----~l~~~L~~lGa---~i~~ 224 (317)
.+++..+++ ++++..+..+.++.|+|+.....-| ++ -++-.|++||+ +++.
T Consensus 84 tagSitl~lq~lLp~~lf~~~~~~l~l~GgT~v~~sPsvDy~~~v~lp~l~~~G~~~~~~~l 145 (360)
T TIGR03400 84 TTRGIGYYLEPLLLLAPFSKKPLSITLKGITNSTGDPSVDTIRTATLPLLKKFGIPDEGLEL 145 (360)
T ss_pred CCcchHHHHHHHHHHHhhCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCceEE
Confidence 888877754 3333333345688899986555444 22 26677899999 6654
No 44
>TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Members of this strictly eukaryotic protein family are not RNA 3'-phosphate cyclase (6.5.1.4), but rather a homolog with a distinct function, found in the nucleolus and required for ribosomal RNA processing. Homo sapiens has both a member of this RCL (RNA terminal phosphate cyclase like) family and EC 6.5.1.4, while Saccharomyces has a member of this family only.
Probab=94.66 E-value=1.1 Score=43.38 Aligned_cols=122 Identities=20% Similarity=0.218 Sum_probs=75.8
Q ss_pred hhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCc-h----HHHHHHHHhC-CCeEEEeCCCCcccEEEEcCCCCCceEEEeC
Q 021126 176 GTAMRPLTAAVTAAGGNLSYILDGVPRMRERP-I----GDLVTGLKQL-GADVDCILGTNCPPVRINGKGGLPGGKVKLS 249 (317)
Q Consensus 176 gta~r~l~a~la~~~~~~~~~i~G~~~l~~rp-i----~~l~~~L~~l-Ga~i~~~~~~~~~Pi~I~g~~~l~g~~i~l~ 249 (317)
+..+|.-+++.+++ ..++.|.+.-.-|.+| + ...++.+.++ ++++...+. +..-+...++ .+.|+++.++
T Consensus 6 ~QilR~alaLS~it--gkpv~I~nIR~~R~~PGL~~qhl~~l~l~~~i~~a~~~g~~~-gst~l~F~Pg-~i~gG~~~~d 81 (360)
T TIGR03400 6 SRNFRQRLVLSTLS--GKPVRITKIRSDDENPGLRDYEVSFLRLLEKVTNGSKIEISY-TGTTVIYKPG-LITGGSVTHE 81 (360)
T ss_pred hHHHHHHHHHHHhc--CCCEEEEEeccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeec-CceEEEEECC-cccCCeEEEe
Confidence 35677777777764 4678888765445555 2 2345666665 666654332 3323666665 7888888774
Q ss_pred CC---CCHHHHHHHHHHHhcCCCeEEEEEc--ccc---cccchH-HHHHHHHHHcCC---EEEE
Q 021126 250 GK---LSSQYLTALLMAAPLALGNVEIEII--DKL---ISVPYV-EMTLKLMERFGV---FVEH 301 (317)
Q Consensus 250 g~---~ssq~~saLllaA~~a~G~~~I~~~--~~~---~s~~yv-~~t~~~L~~lG~---~v~~ 301 (317)
-. .-+-++-+++.++++++++++|+.. .+. .+.+|+ ..++..|++||+ +++.
T Consensus 82 ~gtagSitl~lq~lLp~~lf~~~~~~l~l~GgT~v~~sPsvDy~~~v~lp~l~~~G~~~~~~~l 145 (360)
T TIGR03400 82 CPTTRGIGYYLEPLLLLAPFSKKPLSITLKGITNSTGDPSVDTIRTATLPLLKKFGIPDEGLEL 145 (360)
T ss_pred CCCCcchHHHHHHHHHHHhhCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCceEE
Confidence 21 1245667888899999997666543 332 244555 346678999999 6654
No 45
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional
Probab=94.56 E-value=2.6 Score=40.66 Aligned_cols=117 Identities=16% Similarity=0.161 Sum_probs=71.8
Q ss_pred HHHHHHHHhhcCCcEEEeeCCCCh-------hHHHHHHHHHHc-CCEEEEcCC-ccEEEEEcCCCCcccccccCCceEEE
Q 021126 101 SNRILLLAALSEGTTVVDNLLSSE-------DIHHMLDALKKL-GLNVEEDFA-MKRAIVEGCGGLFPLAKQQTGEIELF 171 (317)
Q Consensus 101 a~r~LlaAaLa~g~t~I~n~~~s~-------dv~~~l~~L~~l-Ga~I~~~~~-~~~l~V~g~~~~~~~~~~~~~~~~i~ 171 (317)
--..|.++++++.+++|+|.-..+ .=...++++.++ +++++.... +..++..+... .. . ...+|
T Consensus 17 lR~alaLS~ltgkpv~I~nIR~~r~~PGL~~qhl~~l~l~~~i~~~~v~g~~~gst~l~f~Pg~i-~~-g-----~~~~d 89 (343)
T PRK04204 17 LRTALALSAITGKPFRITNIRANRPNPGLLRQHLTAVKAAAEICNAEVEGAELGSQELVFIPGPI-RG-G-----DYRFD 89 (343)
T ss_pred HHHHHHHHHhhCCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEEeeecCceEEEEECCCc-cC-C-----eEEEe
Confidence 346788899999999999864331 122355566554 566654321 13566665431 11 1 35788
Q ss_pred ecCchhhHHHH---HHHHHHcCCCcEEEEeCCCCCCCCc-hH----HHHHHHHhCCCeEEE
Q 021126 172 LGNAGTAMRPL---TAAVTAAGGNLSYILDGVPRMRERP-IG----DLVTGLKQLGADVDC 224 (317)
Q Consensus 172 ~g~sgta~r~l---~a~la~~~~~~~~~i~G~~~l~~rp-i~----~l~~~L~~lGa~i~~ 224 (317)
++.+++..+++ ++++..+..+.++.|+|+.....-| ++ -++-.|++||++++.
T Consensus 90 ~~tagsi~l~lq~lLp~~~f~~~~~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l 150 (343)
T PRK04204 90 IGTAGSITLVLQTVLPALLFADGPSRVTITGGTDVPWAPPIDYIRRVTLPLLRRMGIEAEI 150 (343)
T ss_pred cCCCcchhhHHHHHHHHHhcCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 88888887754 3333333345688899986555444 22 367789999998754
No 46
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=94.24 E-value=4.2 Score=38.93 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=72.2
Q ss_pred HHHHHHHhhcCCcEEEeeCCCCh-------hHHHHHHHHHHc-CCEEEEcCC-ccEEEEEcCCCCcccccccCCceEEEe
Q 021126 102 NRILLLAALSEGTTVVDNLLSSE-------DIHHMLDALKKL-GLNVEEDFA-MKRAIVEGCGGLFPLAKQQTGEIELFL 172 (317)
Q Consensus 102 ~r~LlaAaLa~g~t~I~n~~~s~-------dv~~~l~~L~~l-Ga~I~~~~~-~~~l~V~g~~~~~~~~~~~~~~~~i~~ 172 (317)
-..|.++++++.+++|+|.-..+ .=...++++.++ +++++.... +..++..+... .+. ...+|+
T Consensus 16 R~alaLS~ltgkpv~I~nIR~~R~~PGL~~qhl~~l~l~~~i~~a~~~g~~~gst~l~F~Pg~i-~gG------~~~~d~ 88 (326)
T TIGR03399 16 RTALSLSALTGKPVRIYNIRANRPKPGLAPQHLTAVKAAAEICNAEVEGAELGSTELEFIPGKI-RGG------DYRFDI 88 (326)
T ss_pred HHHHHHHHhhCCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEeeeecCceEEEEECCCc-cCC------eEEEeC
Confidence 46788899999999999864332 223456666664 566654321 13566665431 111 457888
Q ss_pred cCchhhHHHH---HHHHHHcCCCcEEEEeCCCCCCCCc-hH----HHHHHHHhCCCeEEE
Q 021126 173 GNAGTAMRPL---TAAVTAAGGNLSYILDGVPRMRERP-IG----DLVTGLKQLGADVDC 224 (317)
Q Consensus 173 g~sgta~r~l---~a~la~~~~~~~~~i~G~~~l~~rp-i~----~l~~~L~~lGa~i~~ 224 (317)
+.+++..+++ +++++.+..+.++.|+|+.....-| ++ -++-.|++||++++.
T Consensus 89 gtagSi~l~lq~lLp~l~f~~~p~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l 148 (326)
T TIGR03399 89 GTAGSVTLVLQTLLPALLFANGPSRVTVSGGTDVPWAPPVDYLRNVFLPLLERMGIRAEL 148 (326)
T ss_pred CCChhhHHHHHHHHHHHHhCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 8888877753 4433434455688899986555444 22 366788999997654
No 47
>PF01137 RTC: RNA 3'-terminal phosphate cyclase; InterPro: IPR023797 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. ; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=93.67 E-value=0.4 Score=43.47 Aligned_cols=122 Identities=21% Similarity=0.268 Sum_probs=68.2
Q ss_pred hhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCc-hH----HHHHHHHhC-CCeEEEeCCCCcccEEEEcCCCCCceEEEeC
Q 021126 176 GTAMRPLTAAVTAAGGNLSYILDGVPRMRERP-IG----DLVTGLKQL-GADVDCILGTNCPPVRINGKGGLPGGKVKLS 249 (317)
Q Consensus 176 gta~r~l~a~la~~~~~~~~~i~G~~~l~~rp-i~----~l~~~L~~l-Ga~i~~~~~~~~~Pi~I~g~~~l~g~~i~l~ 249 (317)
|..+|.-+++.+++ +.++.|.+.-.-+.+| ++ ..++.+.++ ++.++..+. +..-+...++ .++++++..+
T Consensus 10 gq~lR~~laLS~l~--gkpi~I~~IR~~r~~PGL~~qh~~~l~ll~~it~g~~~g~~~-~st~l~f~Pg-~i~~g~~~~d 85 (228)
T PF01137_consen 10 GQILRTALALSALT--GKPIRIENIRANRPNPGLRPQHLSALRLLAKITNGSVIGISL-GSTELTFRPG-EIRGGDYTFD 85 (228)
T ss_dssp TCCHHHHHHHHHHH--T--EEEESTTTTSSS-S--HHHHHHHHHHHHHCCSEEEEEST-TSSEEEEE---EE-ECEEEEE
T ss_pred hHHHHHHHHHHhcc--CCCEEEEEEecCCCCCcccHHHHHHHHHHHHhcCCeecceec-CCcEEEEECC-CccCCcEEEe
Confidence 34566666766664 4789999875445554 22 346666665 666654432 2222666664 6777776654
Q ss_pred CC--C-CHHHHHHHHHHHhcCCCeEEEEE--ccccc---ccchH-HHHHHHHHHcCCEEEE
Q 021126 250 GK--L-SSQYLTALLMAAPLALGNVEIEI--IDKLI---SVPYV-EMTLKLMERFGVFVEH 301 (317)
Q Consensus 250 g~--~-ssq~~saLllaA~~a~G~~~I~~--~~~~~---s~~yv-~~t~~~L~~lG~~v~~ 301 (317)
-. - -+-++.+++..+++++++++|+. ..+.. +.+|+ ..++..|++||++.+.
T Consensus 86 ~~tagsi~l~lq~llp~~~f~~~~~~l~l~GgT~~~~~psvd~~~~v~lP~l~~~G~~~~l 146 (228)
T PF01137_consen 86 CGTAGSISLVLQALLPLLLFAKGPSRLTLTGGTNVPFSPSVDYIRQVFLPLLRKFGIPVEL 146 (228)
T ss_dssp EETTCBHHHHHHHHCCCHCCSSSEEEEEEEEBSBBTTS--HHHHHHTCHHHHHHCT-ECEE
T ss_pred cCCCceeeeeHHHHHHHHHhcCCCEEEEEEEecCCCCCCCHHHHHHHHHHHHHHcCCCcEE
Confidence 21 1 24556678888999999876654 33322 33554 3356689999998763
No 48
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=93.58 E-value=5.8 Score=37.97 Aligned_cols=116 Identities=17% Similarity=0.155 Sum_probs=71.6
Q ss_pred HHHHHHHhhcCCcEEEeeCCCCh-------hHHHHHHHHHHc-CCEEEEcCC-ccEEEEEcCCCCcccccccCCceEEEe
Q 021126 102 NRILLLAALSEGTTVVDNLLSSE-------DIHHMLDALKKL-GLNVEEDFA-MKRAIVEGCGGLFPLAKQQTGEIELFL 172 (317)
Q Consensus 102 ~r~LlaAaLa~g~t~I~n~~~s~-------dv~~~l~~L~~l-Ga~I~~~~~-~~~l~V~g~~~~~~~~~~~~~~~~i~~ 172 (317)
-..|.+|++++.+++|+|.-..+ .=...++++.++ +++++.... +..++..+... ... ....|+
T Consensus 14 R~alaLS~ltg~pv~I~nIR~~r~~PGL~~qh~~~l~ll~~i~~g~~~g~~~gst~l~f~Pg~i-~gG------~~~~d~ 86 (326)
T cd00874 14 RTALALSAVTGKPVRIVNIRANRSNPGLSRQHLTAVRAAARICNAEVEGAELGSTELEFEPGKI-KGG------DYEFDI 86 (326)
T ss_pred HHHHHHHHHhCCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEeeeecCceEEEEECCCc-cCC------cEEEeC
Confidence 45788899999999999764321 123466666665 566653321 13566665431 111 457888
Q ss_pred cCchhhHHHHHHHH---HHcCCCcEEEEeCCCCCCCCc-hH----HHHHHHHhCCCeEEE
Q 021126 173 GNAGTAMRPLTAAV---TAAGGNLSYILDGVPRMRERP-IG----DLVTGLKQLGADVDC 224 (317)
Q Consensus 173 g~sgta~r~l~a~l---a~~~~~~~~~i~G~~~l~~rp-i~----~l~~~L~~lGa~i~~ 224 (317)
+.+++..+++=+++ ..+..+.++.|+|+.....-| ++ -++-.|++||++++.
T Consensus 87 ~tagsi~l~lq~lLp~~~f~~~~~~l~l~GgT~~~~sPsvD~~~~v~lP~l~~~G~~~~l 146 (326)
T cd00874 87 GTAGSITLVLQTLLPALLFADGPSTVTISGGTDVPWAPPIDYLRNVTLPLLERMGIEAEL 146 (326)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCEEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 88888887644433 333345688899986555444 22 256778999997654
No 49
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes. They lack a conserved catalytic histidine residue required for cyclase activity, so probably do not function as cyclases. They are believed to play a role in ribosomal RNA processing and assembly.
Probab=93.13 E-value=8.3 Score=37.14 Aligned_cols=113 Identities=19% Similarity=0.110 Sum_probs=70.8
Q ss_pred HHHHHHHhhcCCcEEEeeCCCC-------hhHHHHHHHHHHc-CCEEEEcC-CccEEEEEcCCCCcccccccCCceEEEe
Q 021126 102 NRILLLAALSEGTTVVDNLLSS-------EDIHHMLDALKKL-GLNVEEDF-AMKRAIVEGCGGLFPLAKQQTGEIELFL 172 (317)
Q Consensus 102 ~r~LlaAaLa~g~t~I~n~~~s-------~dv~~~l~~L~~l-Ga~I~~~~-~~~~l~V~g~~~~~~~~~~~~~~~~i~~ 172 (317)
...|.++++++.+++|+|.-.. +.=...++++.++ ++.++... .+..++..+... .. . ....++
T Consensus 14 R~alaLS~ltgkpv~I~nIR~~r~~PGL~~qhl~~l~ll~~it~g~~~g~~~gst~l~F~PG~i-~g-G-----~~~~d~ 86 (341)
T cd00875 14 RQRLVLATLSGKPIIIKKIRSDDTNPGLRDHEVSFLRLLEKVTNGSVIEISYTGTTLIYKPGLI-TG-G-----VLNHDC 86 (341)
T ss_pred HHHHHHHHhcCCCEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcEEeeecCceEEEEECCCc-cC-C-----cEEEeC
Confidence 4578889999999999986432 1223467777776 66665432 123566665431 11 1 457888
Q ss_pred cCchhhHHHHHHHH---HHcCCCcEEEEeCCCCCCCCc-hH----HHHHHHHhCCCe
Q 021126 173 GNAGTAMRPLTAAV---TAAGGNLSYILDGVPRMRERP-IG----DLVTGLKQLGAD 221 (317)
Q Consensus 173 g~sgta~r~l~a~l---a~~~~~~~~~i~G~~~l~~rp-i~----~l~~~L~~lGa~ 221 (317)
+.+++..|++-+++ ..+..+.++.|+|+.....-| ++ -++-.|++||+.
T Consensus 87 gtagSI~l~Lq~lLp~~~f~~~p~~l~l~GgT~~~~spsvD~~~~v~lP~l~~fG~~ 143 (341)
T cd00875 87 PVSRGIGYFLEPLLLLAPFGKKPLSITLKGITNSTGDPSVDSIRTATLPLLKKFGIP 143 (341)
T ss_pred CCCcchHHHHHHHHHHHhhCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 88888877644433 333345688899986555444 32 256778999984
No 50
>cd00295 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond. The enzymes are conserved in eucaryotes, bacteria and archaea. The exact biological role of this enzyme is unknown, but it has been proposed that it is likely to function in cellular RNA metabolism and processing. RNA phosphate cyclase has been characterized in human (with at least three isozymes), and E. coli, and it seems to be taxonomically widespread. The crystal structure of RNA phospate cyclase shows that it consists of two domains. The larger domain contains three repeats of a fold originally identified in the bacterial translation initiation factor IF3.
Probab=92.21 E-value=3.7 Score=39.47 Aligned_cols=116 Identities=21% Similarity=0.149 Sum_probs=72.6
Q ss_pred HHHHHHHhhcCCcEEEeeCCCC-------hhHHHHHHHHHHc-CCEEEEcCC-ccEEEEEcCCCCcccccccCCceEEEe
Q 021126 102 NRILLLAALSEGTTVVDNLLSS-------EDIHHMLDALKKL-GLNVEEDFA-MKRAIVEGCGGLFPLAKQQTGEIELFL 172 (317)
Q Consensus 102 ~r~LlaAaLa~g~t~I~n~~~s-------~dv~~~l~~L~~l-Ga~I~~~~~-~~~l~V~g~~~~~~~~~~~~~~~~i~~ 172 (317)
-..|.++++++.+++|+|.-.. +.=...++++.++ +++++..+. +..++..+... .. . ...+|+
T Consensus 14 R~alaLS~ltgkpvrI~nIR~~r~~PGL~~qhl~~l~ll~~i~~g~~~g~~~gst~l~F~Pg~i-~g-G-----~~~~d~ 86 (338)
T cd00295 14 RHALSLAMISGQPFRIEGIRADEADPGLKDQHLSALKAAEEICGASVEEAELGGQRFIFRPGNI-IG-G-----DVRFAC 86 (338)
T ss_pred HHHHHHHHhhCCCEEEEEeccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeecCceEEEEECCcc-cC-C-----eEEEeC
Confidence 3578889999999999986432 2223466666664 566654321 13566665431 11 1 457888
Q ss_pred cCchhhHHH---HHHHHHHcCCCcEEEEeCCCCCCCCc-hH----HHHHHHHhCCCeEEE
Q 021126 173 GNAGTAMRP---LTAAVTAAGGNLSYILDGVPRMRERP-IG----DLVTGLKQLGADVDC 224 (317)
Q Consensus 173 g~sgta~r~---l~a~la~~~~~~~~~i~G~~~l~~rp-i~----~l~~~L~~lGa~i~~ 224 (317)
+.+++..++ ++++++.+..+.++.++|+.....-| ++ -++-.|++||++++.
T Consensus 87 gtagSi~l~lq~lLp~~~fa~~~~~l~l~GgT~~~~sPsvD~~~~v~lp~l~~~G~~~~~ 146 (338)
T cd00295 87 GSAGGCGLFLEPILIACLFADGPSRLELSGGTDNNEAIGADFIRRSLEPLLAKIFIHGDE 146 (338)
T ss_pred CCCcchHHHHHHHHHHHHhCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHHhCCcccc
Confidence 888888775 44444444455788899986555444 22 367788999997653
No 51
>KOG3980 consensus RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=82.89 E-value=46 Score=31.98 Aligned_cols=146 Identities=21% Similarity=0.246 Sum_probs=76.5
Q ss_pred EEEecCCHHHHHHHHHHHhhcCCcEEEeeCCC-------ChhHHHHHHHHHHc--CCEEEEcCCccEEEEEcCCCCcccc
Q 021126 91 TVTLPGSKSLSNRILLLAALSEGTTVVDNLLS-------SEDIHHMLDALKKL--GLNVEEDFAMKRAIVEGCGGLFPLA 161 (317)
Q Consensus 91 ~v~ipgskS~a~r~LlaAaLa~g~t~I~n~~~-------s~dv~~~l~~L~~l--Ga~I~~~~~~~~l~V~g~~~~~~~~ 161 (317)
.+.-.|...... .|.++.|+..+++|.+.-. .+.-...+++|+.+ |-.|+++....++...+.- ....
T Consensus 6 ~~~f~g~q~lr~-~lvls~Lsg~pvrv~kiR~~~~~PGlr~~~~s~lrLL~~iTnGs~ie~~~~gTtv~f~Pg~-i~GG- 82 (361)
T KOG3980|consen 6 SYLFGGGQALRL-RLVLSTLSGKPVRVEKIRAGRPNPGLKDQHLSFLRLLRDITNGSVIEIEYTGTTVIFTPGL-ILGG- 82 (361)
T ss_pred eEEecchHHHHH-HHHHHHhcCCceEEEEeccCCCCCCchHHHHHHHHHHHhhcCCcEEEEeecccEEEEcCce-eeCC-
Confidence 334444444443 4555777888888875433 23446688888886 5556654332244433321 1110
Q ss_pred cccCCceEEEecCchhhHH---HHHHHHHHcCCCcEEEEeCCCCCCCCc----hH-HHHHHHHhCCCeEEEeCCCCcccE
Q 021126 162 KQQTGEIELFLGNAGTAMR---PLTAAVTAAGGNLSYILDGVPRMRERP----IG-DLVTGLKQLGADVDCILGTNCPPV 233 (317)
Q Consensus 162 ~~~~~~~~i~~g~sgta~r---~l~a~la~~~~~~~~~i~G~~~l~~rp----i~-~l~~~L~~lGa~i~~~~~~~~~Pi 233 (317)
....||.-+....| ++++++..+..+.+++++|+..-...| ++ .++..|++||..-+... +
T Consensus 83 -----~~~~dc~t~~~I~y~leplL~l~pF~k~P~~i~lkGvTN~~~~p~VD~ik~~~lpvlkkFgv~~~elk------i 151 (361)
T KOG3980|consen 83 -----TVTHDCPTARSIGYFLEPLLPLCPFAKSPLRITLKGVTNSDGDPSVDYIKAVLLPVLKKFGVNDEELK------I 151 (361)
T ss_pred -----ceEEeccCccceeeehhhHHhhhcccCCCeEEEEecccCCCCCcchHHHHHHHHHHHHHhCcCcceEE------E
Confidence 12334433323333 444443333456788999986433333 22 37889999998754110 2
Q ss_pred EEEcCCCCCceEEEeCC
Q 021126 234 RINGKGGLPGGKVKLSG 250 (317)
Q Consensus 234 ~I~g~~~l~g~~i~l~g 250 (317)
.=+|-.+.-|+++.+.-
T Consensus 152 ~kRG~~P~GgGeV~f~~ 168 (361)
T KOG3980|consen 152 QKRGFAPEGGGEVVFTV 168 (361)
T ss_pred EecccCCCCCcEEEEEc
Confidence 22343345566776653
No 52
>KOG3980 consensus RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=74.37 E-value=38 Score=32.50 Aligned_cols=120 Identities=23% Similarity=0.310 Sum_probs=69.3
Q ss_pred hhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCc----h-HHHHHHHHhC--CCeEEEeCCCCcccEEEEcCCCCCceEEEe
Q 021126 176 GTAMRPLTAAVTAAGGNLSYILDGVPRMRERP----I-GDLVTGLKQL--GADVDCILGTNCPPVRINGKGGLPGGKVKL 248 (317)
Q Consensus 176 gta~r~l~a~la~~~~~~~~~i~G~~~l~~rp----i-~~l~~~L~~l--Ga~i~~~~~~~~~Pi~I~g~~~l~g~~i~l 248 (317)
+..+|..+++.++. ..++.+...-.-+.+| . ..++..|+++ |-.++++.. +. .+...+ +-+.|+.+..
T Consensus 12 ~q~lr~~lvls~Ls--g~pvrv~kiR~~~~~PGlr~~~~s~lrLL~~iTnGs~ie~~~~-gT-tv~f~P-g~i~GG~~~~ 86 (361)
T KOG3980|consen 12 GQALRLRLVLSTLS--GKPVRVEKIRAGRPNPGLKDQHLSFLRLLRDITNGSVIEIEYT-GT-TVIFTP-GLILGGTVTH 86 (361)
T ss_pred hHHHHHHHHHHHhc--CCceEEEEeccCCCCCCchHHHHHHHHHHHhhcCCcEEEEeec-cc-EEEEcC-ceeeCCceEE
Confidence 45666666665553 3456555443223333 2 2367777776 666666542 22 143443 3678877665
Q ss_pred CCC---CCHHHHHHHHHHHhcCCCeEEEEEcc--cc---cccchHH-HHHHHHHHcCCEEE
Q 021126 249 SGK---LSSQYLTALLMAAPLALGNVEIEIID--KL---ISVPYVE-MTLKLMERFGVFVE 300 (317)
Q Consensus 249 ~g~---~ssq~~saLllaA~~a~G~~~I~~~~--~~---~s~~yv~-~t~~~L~~lG~~v~ 300 (317)
+.. .-.-|+..+|.+++|+..+++|+..+ +. .+.+|+. .....|++||++-+
T Consensus 87 dc~t~~~I~y~leplL~l~pF~k~P~~i~lkGvTN~~~~p~VD~ik~~~lpvlkkFgv~~~ 147 (361)
T KOG3980|consen 87 DCPTARSIGYFLEPLLPLCPFAKSPLRITLKGVTNSDGDPSVDYIKAVLLPVLKKFGVNDE 147 (361)
T ss_pred eccCccceeeehhhHHhhhcccCCCeEEEEecccCCCCCcchHHHHHHHHHHHHHhCcCcc
Confidence 421 11345668889999999998876432 22 2445553 34568999998654
No 53
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=44.56 E-value=39 Score=30.20 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=30.2
Q ss_pred CcEEEEeCCCCCCCCchHHHHHHHHhCCCeEEEeC
Q 021126 192 NLSYILDGVPRMRERPIGDLVTGLKQLGADVDCIL 226 (317)
Q Consensus 192 ~~~~~i~G~~~l~~rpi~~l~~~L~~lGa~i~~~~ 226 (317)
...++|+|++++..+.+..+++.|++.|.++..+.
T Consensus 72 ~~~V~lTGGEP~~~~~l~~Ll~~l~~~g~~~~lET 106 (212)
T COG0602 72 ARGVSLTGGEPLLQPNLLELLELLKRLGFRIALET 106 (212)
T ss_pred cceEEEeCCcCCCcccHHHHHHHHHhCCceEEecC
Confidence 34689999999777789999999999999988765
No 54
>COG1925 FruB Phosphotransferase system, HPr-related proteins [Carbohydrate transport and metabolism]
Probab=35.54 E-value=2e+02 Score=21.99 Aligned_cols=80 Identities=11% Similarity=0.160 Sum_probs=50.4
Q ss_pred cEEEEeCCCCCCCCchHHHHHHHHhCCCeEEEeCCCCcccEEEEcCCCCCceEEEeCCCCCHHHHHHHHHHHhcCCCeEE
Q 021126 193 LSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVE 272 (317)
Q Consensus 193 ~~~~i~G~~~l~~rpi~~l~~~L~~lGa~i~~~~~~~~~Pi~I~g~~~l~g~~i~l~g~~ssq~~saLllaA~~a~G~~~ 272 (317)
.+++|.+..-+.-||-..+++..+++-++|....+ | ..+ + ..-++++++++..-...++
T Consensus 4 ~~~~i~n~~GLHARPAa~lv~~a~~f~s~i~l~~~-g--------------~~~--~----akSim~lm~Lg~~~G~~i~ 62 (88)
T COG1925 4 KTVTIKNKNGLHARPAAKLVKLASKFDSEITLTNN-G--------------KEA--N----AKSIMGLMALGAKKGDEIE 62 (88)
T ss_pred eEEEEECCCccchhhHHHHHHHHhcCCceEEEEeC-C--------------EEe--c----hHhHHHHHHhCcCCCCEEE
Confidence 46778887778999999999999999888876542 2 222 1 1225677777766666667
Q ss_pred EEEcccccccchHHHHHHHHHH
Q 021126 273 IEIIDKLISVPYVEMTLKLMER 294 (317)
Q Consensus 273 I~~~~~~~s~~yv~~t~~~L~~ 294 (317)
|...++ .+..-++...+.++.
T Consensus 63 i~a~G~-de~~Al~aL~~li~~ 83 (88)
T COG1925 63 LSAEGE-DEEEALEALSELIES 83 (88)
T ss_pred EEEeCc-cHHHHHHHHHHHHHh
Confidence 664332 223334444444444
No 55
>PHA02627 hypothetical protein; Provisional
Probab=32.33 E-value=34 Score=24.39 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=20.2
Q ss_pred CChhHHHHHHHHHHcCCEEEEcCC
Q 021126 122 SSEDIHHMLDALKKLGLNVEEDFA 145 (317)
Q Consensus 122 ~s~dv~~~l~~L~~lGa~I~~~~~ 145 (317)
..+|+..++++|..+|++|..+++
T Consensus 33 ded~i~ellniltelgcdvdfde~ 56 (73)
T PHA02627 33 DEDDITELLNILTELGCDVDFDED 56 (73)
T ss_pred CHHHHHHHHHHHHHhCCCcccccc
Confidence 346889999999999999988753
No 56
>PF06076 Orthopox_F14: Orthopoxvirus F14 protein; InterPro: IPR009280 This family consists of several short Orthopoxvirus F14 proteins. The function of this protein is unknown.
Probab=31.09 E-value=35 Score=24.32 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=20.1
Q ss_pred CChhHHHHHHHHHHcCCEEEEcCC
Q 021126 122 SSEDIHHMLDALKKLGLNVEEDFA 145 (317)
Q Consensus 122 ~s~dv~~~l~~L~~lGa~I~~~~~ 145 (317)
..+++..++++|..+|++|..+++
T Consensus 33 ded~i~ellniltelgcdvdfde~ 56 (73)
T PF06076_consen 33 DEDDIMELLNILTELGCDVDFDEN 56 (73)
T ss_pred CHHHHHHHHHHHHHhCCCcccccc
Confidence 346789999999999999988753
No 57
>PRK10850 PTS system phosphohistidinoprotein-hexose phosphotransferase subunit Hpr; Provisional
Probab=29.67 E-value=2.5e+02 Score=21.17 Aligned_cols=33 Identities=12% Similarity=0.260 Sum_probs=27.9
Q ss_pred cEEEEeCCCCCCCCchHHHHHHHHhCCCeEEEe
Q 021126 193 LSYILDGVPRMRERPIGDLVTGLKQLGADVDCI 225 (317)
Q Consensus 193 ~~~~i~G~~~l~~rpi~~l~~~L~~lGa~i~~~ 225 (317)
.+++|.+..-|.-||...+++..+++.++|...
T Consensus 4 ~~v~I~n~~GLHARPAa~lv~~a~~~~s~v~l~ 36 (85)
T PRK10850 4 QEVTITAPNGLHTRPAAQFVKEAKGFTSEITVT 36 (85)
T ss_pred EEEEECCCCcccHHHHHHHHHHHHhCCCEEEEE
Confidence 467788877889999999999999999888654
No 58
>PHA02780 hypothetical protein; Provisional
Probab=28.57 E-value=42 Score=23.95 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=19.6
Q ss_pred ChhHHHHHHHHHHcCCEEEEcCC
Q 021126 123 SEDIHHMLDALKKLGLNVEEDFA 145 (317)
Q Consensus 123 s~dv~~~l~~L~~lGa~I~~~~~ 145 (317)
.+++..++++|..+|++|..+++
T Consensus 34 ed~i~ellniltelgcdvdfde~ 56 (73)
T PHA02780 34 EDEIMELLNILTELGCDVDFDEN 56 (73)
T ss_pred hHHHHHHHHHHHHhCCCcccccc
Confidence 46788999999999999988753
No 59
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=26.03 E-value=1.9e+02 Score=27.89 Aligned_cols=145 Identities=17% Similarity=0.174 Sum_probs=78.1
Q ss_pred ChhHHHHHHHHHHcCCEEEEcCCccEEEEEcCCCCcccccccCCceEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCC
Q 021126 123 SEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPR 202 (317)
Q Consensus 123 s~dv~~~l~~L~~lGa~I~~~~~~~~l~V~g~~~~~~~~~~~~~~~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~ 202 (317)
.+++.-+.++|++....+..... ..+-+-|.++.- ...+ |.+|+.-|+++. ..-++...|..+
T Consensus 53 ~eEi~G~~~am~~~~~~~~~p~~-~~vDi~GTGGDg--------~~T~---NiSt~aA~v~A~-----~Gv~VaKHGnrs 115 (338)
T COG0547 53 PEEIAGFAEAMREHAPKLPVPAA-DPVDIVGTGGDG--------ANTI---NISTAAAIVAAA-----AGVPVAKHGNRS 115 (338)
T ss_pred HHHHHHHHHHHHHhcccCCCCCC-CCCCeecCCCCC--------CCcc---cchHHHHHHHHh-----CCCcEEeECCCC
Confidence 45778899999986655554432 124455554311 1134 334444343332 347899999888
Q ss_pred CCCCchHHHHHHHHhCCCeEEEeCC--------CCcccEEEEcCCCCCceEEEe------CCCCCHHHHHHHHHHHhcC-
Q 021126 203 MRERPIGDLVTGLKQLGADVDCILG--------TNCPPVRINGKGGLPGGKVKL------SGKLSSQYLTALLMAAPLA- 267 (317)
Q Consensus 203 l~~rpi~~l~~~L~~lGa~i~~~~~--------~~~~Pi~I~g~~~l~g~~i~l------~g~~ssq~~saLllaA~~a- 267 (317)
...+.-. .|+|+.||+++....+ .+. ..+..+ .+++.-=.+ =|.. +.+=+.++++
T Consensus 116 ~sSksGs--aDvleaLGv~l~~~~e~~~~~l~~~g~--~FlfAp-~~hp~~k~v~~vR~~LG~R-----TifN~LGPL~N 185 (338)
T COG0547 116 VSSKSGS--ADVLEALGVNLELSPEQAARALEETGI--GFLFAP-AYHPAMKHVAPVRKELGVR-----TIFNLLGPLLN 185 (338)
T ss_pred CCCCCcH--HHHHHHcCCCCCCCHHHHHHHHHhcCe--EEEEcc-ccCHHHHHHHHHHHHcCCC-----chHHhhccccC
Confidence 8777443 8899999999876321 121 233332 222210000 0010 1222334443
Q ss_pred --CCeEEEEEcccccccchHHHHHHHHHHcCC
Q 021126 268 --LGNVEIEIIDKLISVPYVEMTLKLMERFGV 297 (317)
Q Consensus 268 --~G~~~I~~~~~~~s~~yv~~t~~~L~~lG~ 297 (317)
.-...+.+ +.+.+|++.+.+.|+.+|.
T Consensus 186 Pa~~~~qliG---V~~p~~~~~~A~~l~~LG~ 214 (338)
T COG0547 186 PARAKLQLIG---VYHPELVELLAEALRLLGV 214 (338)
T ss_pred CCCCCceEEE---EeCHHHHHHHHHHHHHhCc
Confidence 22234443 2467899999999999995
No 60
>PRK07394 hypothetical protein; Provisional
Probab=25.39 E-value=4.1e+02 Score=25.52 Aligned_cols=150 Identities=20% Similarity=0.103 Sum_probs=76.9
Q ss_pred ChhHHHHHHHHHHcCCEEEEcCCccEEEEEcCCCCcccccccCCceEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCC
Q 021126 123 SEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPR 202 (317)
Q Consensus 123 s~dv~~~l~~L~~lGa~I~~~~~~~~l~V~g~~~~~~~~~~~~~~~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~ 202 (317)
.+++..++++|++.-..+....+...+.+-|.++ +.. ...+ |.+|+.-+++| . ..-++...|...
T Consensus 58 ~eEiaG~~~a~~~~~~~~~~~~~~~~~d~~Gtgg--DG~-----~~t~---NiSt~aA~v~A----~-~Gv~V~kHGnr~ 122 (342)
T PRK07394 58 PEELAGMLDTYDELGPKLQSPSNQRPPIVFGMPY--DGR-----SRTA---PIYPLTALILA----A-AGQPVVLHGGDR 122 (342)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCceeEEeCCC--CCC-----CCCc---ccHHHHHHHHH----H-CCCeEEEECCCC
Confidence 3568889999998766554321101234444432 100 0122 33443323322 1 347899999876
Q ss_pred CCCCchHHHHHHHHhCCCeEEE-eCC--------CCcccEEEEcCCCCCceEEEe------CCCCCHHHHHHHHHHHhcC
Q 021126 203 MRERPIGDLVTGLKQLGADVDC-ILG--------TNCPPVRINGKGGLPGGKVKL------SGKLSSQYLTALLMAAPLA 267 (317)
Q Consensus 203 l~~rpi~~l~~~L~~lGa~i~~-~~~--------~~~~Pi~I~g~~~l~g~~i~l------~g~~ssq~~saLllaA~~a 267 (317)
...+-=....|+|+.||+++.. ..+ .|. ..+..+ .+++.--++ =|.. +.+=+++++.
T Consensus 123 ~ssk~GvtsaDvLe~LGv~~~~~~~~~~~~~l~~~g~--~Fl~ap-~~hP~m~~~~~vR~~Lg~R-----T~fN~lgpL~ 194 (342)
T PRK07394 123 MPTKYGVPLVELWQGLGVDLTGLSLEQVQEGFEQTGL--AFIYQP-DHFPLAESLIPYRDEIGKR-----PPLATLELIW 194 (342)
T ss_pred CCCCCCchHHHHHHHCCCCCCCCCHHHHHHHHHHcCc--eeeech-hhCHHHHHHHHHHHHhCCC-----CHHHHHHHhc
Confidence 6655322358999999999865 321 122 223322 222110000 0011 1222345544
Q ss_pred C----CeEEEEEcccccccchHHHHHHHHHHcCCE
Q 021126 268 L----GNVEIEIIDKLISVPYVEMTLKLMERFGVF 298 (317)
Q Consensus 268 ~----G~~~I~~~~~~~s~~yv~~t~~~L~~lG~~ 298 (317)
+ -...|.+. -..+|++.+.+.|+.+|.+
T Consensus 195 NP~a~~~~~v~Gv---~~~~~~~~~a~~l~~lg~~ 226 (342)
T PRK07394 195 TPHQGDHHLVSGF---VHPPTEARAWEALELRGET 226 (342)
T ss_pred CCCCCCCceEEEe---eCHHHHHHHHHHHHHcCCC
Confidence 3 12445543 4678999999999999974
No 61
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=24.74 E-value=2.6e+02 Score=26.64 Aligned_cols=84 Identities=23% Similarity=0.251 Sum_probs=48.0
Q ss_pred ChhHHHHHHHHHHcCCEEEEcCCccEEEEEcCCCCcccccccCCceEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCC
Q 021126 123 SEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPR 202 (317)
Q Consensus 123 s~dv~~~l~~L~~lGa~I~~~~~~~~l~V~g~~~~~~~~~~~~~~~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~ 202 (317)
.+++..+.++|++.+..+.+......+-+.|.++.- ...+ |.++++ +.+++. .+-++..+|...
T Consensus 46 ~~Elag~~~a~~~~~~~~~~~~~~~~iD~~gtggdg--------~~t~---nist~~----a~vlA~-~G~~V~kHG~r~ 109 (330)
T TIGR01245 46 PEEITGFAKAMREHAVKVPGRPVEDLVDIVGTGGDG--------ANTI---NISTAS----AFVAAA-AGVKVAKHGNRS 109 (330)
T ss_pred HHHHHHHHHHHHHhCCCCCCccCCCcccccCCCCCC--------CCcc---ccHHHH----HHHHHh-CCCEEEEeCCCC
Confidence 467888999999998766542111123233443210 1122 223322 222222 347899999877
Q ss_pred CCCCchHHHHHHHHhCCCeEEE
Q 021126 203 MRERPIGDLVTGLKQLGADVDC 224 (317)
Q Consensus 203 l~~rpi~~l~~~L~~lGa~i~~ 224 (317)
+..+- -..+.|+.+|+++..
T Consensus 110 ~~s~~--Gs~d~le~LGi~~~~ 129 (330)
T TIGR01245 110 VSSKS--GSADVLEALGVNLDL 129 (330)
T ss_pred CCCCc--cHHHHHHHcCCCCCC
Confidence 77652 247899999998853
No 62
>PRK13782 phosphocarrier protein Chr; Provisional
Probab=24.24 E-value=3e+02 Score=20.34 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=28.2
Q ss_pred cEEEEeCCCCCCCCchHHHHHHHHhCCCeEEEe
Q 021126 193 LSYILDGVPRMRERPIGDLVTGLKQLGADVDCI 225 (317)
Q Consensus 193 ~~~~i~G~~~l~~rpi~~l~~~L~~lGa~i~~~ 225 (317)
..++|.+..-+.-||...+++..+++.++|...
T Consensus 4 ~~~~i~~~~GlHaRPA~~lv~~a~~f~~~i~l~ 36 (82)
T PRK13782 4 KRVEVSLKTGLQARPAALFVQEANRFHADIFIE 36 (82)
T ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCEEEEE
Confidence 467788888889999999999999999988764
No 63
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=23.17 E-value=1.2e+02 Score=27.30 Aligned_cols=35 Identities=23% Similarity=0.238 Sum_probs=29.5
Q ss_pred CcEEEEeCCCCCCCCchHHHHHHHHhCCCeEEEeC
Q 021126 192 NLSYILDGVPRMRERPIGDLVTGLKQLGADVDCIL 226 (317)
Q Consensus 192 ~~~~~i~G~~~l~~rpi~~l~~~L~~lGa~i~~~~ 226 (317)
...+.|+|++.+-.+.+.++++.|++.|.++..+-
T Consensus 73 ~~~V~lTGGEPll~~~l~~li~~l~~~g~~v~leT 107 (238)
T TIGR03365 73 PLHVSLSGGNPALQKPLGELIDLGKAKGYRFALET 107 (238)
T ss_pred CCeEEEeCCchhhhHhHHHHHHHHHHCCCCEEEEC
Confidence 35699999998877778999999999999987654
No 64
>PLN02641 anthranilate phosphoribosyltransferase
Probab=22.82 E-value=2.5e+02 Score=27.04 Aligned_cols=160 Identities=18% Similarity=0.103 Sum_probs=81.8
Q ss_pred HHHHHHHHhhcCCcEEEeeCCCChhHHHHHHHHHHcCCEEEEcCCccEEEEEcCCCCcccccccCCceEEEecCchhhHH
Q 021126 101 SNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMR 180 (317)
Q Consensus 101 a~r~LlaAaLa~g~t~I~n~~~s~dv~~~l~~L~~lGa~I~~~~~~~~l~V~g~~~~~~~~~~~~~~~~i~~g~sgta~r 180 (317)
+..++++|.-..|+ ..+++..+.++|++.+..+.... ..+-+.|.++.- ...+ |.+|+.-
T Consensus 37 qigAfL~alr~kge-------t~eEiag~~~a~~~~~~~~~~~~--~~~D~~gtGGdg--------~~t~---nist~aa 96 (343)
T PLN02641 37 QISAFLVLLRAKGE-------TFEEIAGLARAMIKRARKVDGLV--DAVDIVGTGGDG--------ANTV---NISTGSS 96 (343)
T ss_pred HHHHHHHHHHHhCC-------CHHHHHHHHHHHHHhCCCCCCCC--CCCceeCCCCCC--------CCcc---ccHHHHH
Confidence 34444545444553 24678889999999886664321 134344443210 1122 3334332
Q ss_pred HHHHHHHHcCCCcEEEEeCCCCCCCCchHHHHHHHHhCCCeEEEeCC--------CCcccEEEEcCCCCCceEEEe----
Q 021126 181 PLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILG--------TNCPPVRINGKGGLPGGKVKL---- 248 (317)
Q Consensus 181 ~l~a~la~~~~~~~~~i~G~~~l~~rpi~~l~~~L~~lGa~i~~~~~--------~~~~Pi~I~g~~~l~g~~i~l---- 248 (317)
|++| . ..-++..+|...+..+ .-..|+|+.||+++....+ .+. ..+..+ .+++.--.+
T Consensus 97 ~v~A---~--~G~~V~kHGnr~~ss~--~GsaDvLeaLGi~~~~~~~~~~~~l~~~g~--~fl~a~-~~hPa~~~~~~~R 166 (343)
T PLN02641 97 ILAA---A--CGAKVAKQGNRSSSSA--CGSADVLEALGVAIDLGPEGVKRCVEEVGI--GFMMAP-KYHPAMKIVAPVR 166 (343)
T ss_pred HHHH---h--CCCeEEEeCCCCCCCc--cCHHHHHHHcCCCCCCCHHHHHHHHHhcCc--EEEech-hhCHHHHHHHHHH
Confidence 3322 1 3468889998777665 3357899999998854321 121 112221 122110000
Q ss_pred --CCCCCHHHHHHHHHHHhcCC---CeEEEEEcccccccchHHHHHHHHHHcCCE
Q 021126 249 --SGKLSSQYLTALLMAAPLAL---GNVEIEIIDKLISVPYVEMTLKLMERFGVF 298 (317)
Q Consensus 249 --~g~~ssq~~saLllaA~~a~---G~~~I~~~~~~~s~~yv~~t~~~L~~lG~~ 298 (317)
=|.. +.+=+++++++ -+..+.+. -..+|.+.+.+.|+.+|.+
T Consensus 167 ~~LG~R-----T~fN~lgpL~NPa~~~~~v~GV---~~~~~~~~~a~al~~lG~~ 213 (343)
T PLN02641 167 KKLKVK-----TVFNILGPMLNPARVPHAVVGV---YHESLVEKMAKALQRFGMK 213 (343)
T ss_pred HHhCCC-----cHHHHHHHhcCCCCCCceEEee---eCHHHHHHHHHHHHHcCCC
Confidence 0010 11223344432 23455543 4678999999999999984
No 65
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=22.48 E-value=1.6e+02 Score=20.79 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=24.6
Q ss_pred CcEEEeeCCCChhHHHHHHHHHHcCCEEEE
Q 021126 113 GTTVVDNLLSSEDIHHMLDALKKLGLNVEE 142 (317)
Q Consensus 113 g~t~I~n~~~s~dv~~~l~~L~~lGa~I~~ 142 (317)
|.++|...+.+++-..+.++|++.|++.+.
T Consensus 1 ~~v~ly~~~~C~~C~ka~~~L~~~gi~~~~ 30 (73)
T cd03027 1 GRVTIYSRLGCEDCTAVRLFLREKGLPYVE 30 (73)
T ss_pred CEEEEEecCCChhHHHHHHHHHHCCCceEE
Confidence 456777778888999999999999987664
No 66
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=20.95 E-value=4e+02 Score=27.26 Aligned_cols=149 Identities=16% Similarity=0.157 Sum_probs=76.4
Q ss_pred ChhHHHHHHHHHHcCCEEEEcCCccEEEEEcCCCCcccccccCCceEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCC
Q 021126 123 SEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPR 202 (317)
Q Consensus 123 s~dv~~~l~~L~~lGa~I~~~~~~~~l~V~g~~~~~~~~~~~~~~~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~ 202 (317)
.+++..+.++|++....+..... ..+-+.|.++.- ...+ |.+|++ ++++++ ..-++...|...
T Consensus 244 ~~El~g~~~a~~~~~~~~~~~~~-~~~D~~gtggdg--------~~t~---nist~~----a~v~A~-~G~~V~kHG~r~ 306 (534)
T PRK14607 244 ADELAGFASVMREKSRHIPAPSP-RTVDTCGTGGDG--------FGTF---NISTTS----AFVVAA-AGVPVAKHGNRA 306 (534)
T ss_pred HHHHHHHHHHHHHhCCcCCCCCC-CceEEccCCCCC--------CCcc---ccHHHH----HHHHHh-CCCcEEEECCCC
Confidence 35788899999988876654321 135455554210 1122 223322 222222 347899999877
Q ss_pred CCCCchHHHHHHHHhCCCeEEEeCC--------CCcccEEEEcCCCCCceEEEe---CCCCCHHHHHHHHHHHhcCC---
Q 021126 203 MRERPIGDLVTGLKQLGADVDCILG--------TNCPPVRINGKGGLPGGKVKL---SGKLSSQYLTALLMAAPLAL--- 268 (317)
Q Consensus 203 l~~rpi~~l~~~L~~lGa~i~~~~~--------~~~~Pi~I~g~~~l~g~~i~l---~g~~ssq~~saLllaA~~a~--- 268 (317)
+..+- -..|.|+.||+++....+ .+. ..+..+ .+.+.--.+ ....--+ +.+=++.++++
T Consensus 307 ~ss~~--Gsadvle~lGv~~~~~~~~~~~~l~~~g~--~fl~ap-~~~p~l~~~~~~R~~Lg~r--TifN~lgpL~NP~~ 379 (534)
T PRK14607 307 VSSKS--GSADVLEALGVKLEMTPEEAASVLRETGF--SFLFAP-LFHPAMKHAAPARRELGIR--TAFNLLGPLTNPAR 379 (534)
T ss_pred CCCCc--cHHHHHHHcCCCCCCCHHHHHHHHHHhCc--EEeecc-ccCHHHHHHHHHHHHhCCC--cHHHhHHhccCCCC
Confidence 77662 256899999998853321 121 222222 121110000 0000000 12333455542
Q ss_pred CeEEEEEcccccccchHHHHHHHHHHcCCE
Q 021126 269 GNVEIEIIDKLISVPYVEMTLKLMERFGVF 298 (317)
Q Consensus 269 G~~~I~~~~~~~s~~yv~~t~~~L~~lG~~ 298 (317)
-...+.+ +...+|.+.+.+.|+.+|.+
T Consensus 380 ~~~~v~G---v~~~~~~~~~a~~l~~lg~~ 406 (534)
T PRK14607 380 VKYQIVG---VFDPSYAEPLAQALQRLGTE 406 (534)
T ss_pred CCcEEEe---eCCHHHHHHHHHHHHHcCCC
Confidence 1244544 34678999999999999984
No 67
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.70 E-value=1.6e+02 Score=22.87 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=18.4
Q ss_pred chHHHHHHHHHHcCCEEEEeCC
Q 021126 283 PYVEMTLKLMERFGVFVEHSDS 304 (317)
Q Consensus 283 ~yv~~t~~~L~~lG~~v~~~~d 304 (317)
|-++...+.|+.+|..+.+++|
T Consensus 12 ~~~dri~~~l~e~g~~v~~eGD 33 (96)
T COG4004 12 PDPDRIMRGLSELGWTVSEEGD 33 (96)
T ss_pred CCHHHHHHHHHHhCeeEeeccc
Confidence 4457778899999999999986
No 68
>PF13541 ChlI: Subunit ChlI of Mg-chelatase
Probab=20.31 E-value=3.2e+02 Score=22.09 Aligned_cols=93 Identities=14% Similarity=0.212 Sum_probs=48.8
Q ss_pred EEEeCCCCCCCCc-hHHHHHHHHhCCCeEEEeCCCCcccEEEEcCCCCCceEEEeCCCCCHHHHHHHHHHHhcCC----C
Q 021126 195 YILDGVPRMRERP-IGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLAL----G 269 (317)
Q Consensus 195 ~~i~G~~~l~~rp-i~~l~~~L~~lGa~i~~~~~~~~~Pi~I~g~~~l~g~~i~l~g~~ssq~~saLllaA~~a~----G 269 (317)
+.|.|.....-++ -.++..+|+..|.++... . +.|. +.++.+...| ...+...|+.+++.+.+ .
T Consensus 12 ~~ivGl~~~av~esr~Rv~~al~~~g~~~p~~---~---i~VN----lap~~l~k~g-~~~DLaIA~ailsa~~~~~~~~ 80 (121)
T PF13541_consen 12 FNIVGLPDTAVKESRERVRSALKNSGFPFPNQ---D---ITVN----LAPADLKKEG-PAFDLAIAIAILSAFGQIPIPE 80 (121)
T ss_pred eEEecCchHHHHHHHHHHHHHHHhcCCCCCcc---e---eeeE----EEeCCEEEee-eeehHHHHHHHHHhCCCcccCC
Confidence 5556654333333 245888999999877532 2 4443 2223333343 23355555555554432 1
Q ss_pred eEEEE----EcccccccchHHHHHHHHHHcCCE
Q 021126 270 NVEIE----IIDKLISVPYVEMTLKLMERFGVF 298 (317)
Q Consensus 270 ~~~I~----~~~~~~s~~yv~~t~~~L~~lG~~ 298 (317)
++.+. ..+++...+++.-.+...+++|.+
T Consensus 81 ~~~~~GEl~L~G~ir~v~~~~~~~~~A~~~G~~ 113 (121)
T PF13541_consen 81 DTVFIGELGLDGEIRPVPGILPRIIEAKKLGFK 113 (121)
T ss_pred CEEEEEEecCCccEEecCcHHHHHHHHHHCCCC
Confidence 22222 222345566677777788999874
Done!