RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 021126
(317 letters)
>gnl|CDD|177972 PLN02338, PLN02338, 3-phosphoshikimate 1-carboxyvinyltransferase.
Length = 443
Score = 470 bits (1211), Expect = e-166
Identities = 202/241 (83%), Positives = 217/241 (90%)
Query: 77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKL 136
A EI LQPI+EISGTV LPGSKSLSNRILLLAALSEGTTVVDNLL S+DI +ML ALK L
Sbjct: 1 AEEITLQPIKEISGTVKLPGSKSLSNRILLLAALSEGTTVVDNLLDSDDIRYMLGALKTL 60
Query: 137 GLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYI 196
GLNVEED RA+VEGCGG FP++ ++ELFLGNAGTAMRPLTAAVTAAGGN SY+
Sbjct: 61 GLNVEEDSENNRAVVEGCGGKFPVSGDSKEDVELFLGNAGTAMRPLTAAVTAAGGNASYV 120
Query: 197 LDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQY 256
LDGVPRMRERPIGDLV GLKQLGADV+C LGTNCPPVR+N GGLPGGKVKLSG +SSQY
Sbjct: 121 LDGVPRMRERPIGDLVDGLKQLGADVECTLGTNCPPVRVNAAGGLPGGKVKLSGSISSQY 180
Query: 257 LTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKY 316
LTALLMAAPLALG+VEIEI+DKLISVPYVEMTLKLMERFGV VEHSDSWDRFFI+GGQKY
Sbjct: 181 LTALLMAAPLALGDVEIEIVDKLISVPYVEMTLKLMERFGVSVEHSDSWDRFFIKGGQKY 240
Query: 317 K 317
K
Sbjct: 241 K 241
>gnl|CDD|237003 PRK11860, PRK11860, bifunctional 3-phosphoshikimate
1-carboxyvinyltransferase/cytidine monophosphate kinase;
Provisional.
Length = 661
Score = 273 bits (699), Expect = 1e-86
Identities = 122/237 (51%), Positives = 156/237 (65%), Gaps = 11/237 (4%)
Query: 82 LQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVE 141
L P+ GTV LPGSKS+SNR+LLLAALSEGTT V +LL S+D MLDAL+ LG VE
Sbjct: 9 LPPLLSAGGTVRLPGSKSISNRVLLLAALSEGTTTVRDLLDSDDTRVMLDALRALGCGVE 68
Query: 142 EDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVP 201
+ R + G GG FP+ + +LFLGNAGTAMRPLTAA+ GG Y L GVP
Sbjct: 69 QLGDTYR--ITGLGGQFPVKQ-----ADLFLGNAGTAMRPLTAALALLGG--EYELSGVP 119
Query: 202 RMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALL 261
RM ERPIGDLV L+QLG D+D + PP+RI +++ G +SSQ+LTALL
Sbjct: 120 RMHERPIGDLVDALRQLGCDIDYLGNEGFPPLRIGPAPLRLDAPIRVRGDVSSQFLTALL 179
Query: 262 MAAPLALG-NVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYK 317
MA PL ++ IE++ +LIS PY+E+TL L+ RFG+ V+ + W RF I G +Y+
Sbjct: 180 MALPLVARRDITIEVVGELISKPYIEITLNLLARFGIAVQR-EGWQRFTIPAGSRYR 235
>gnl|CDD|238797 cd01556, EPSP_synthase, EPSP synthase domain. 3-phosphoshikimate
1-carboxyvinyltransferase
(5-enolpyruvylshikimate-3-phosphate synthase) (EC
2.5.1.19) catalyses the reaction between
shikimate-3-phosphate (S3P) and phosphoenolpyruvate
(PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP),
an intermediate in the shikimate pathway leading to
aromatic amino acid biosynthesis. The reaction is
phosphoenolpyruvate + 3-phosphoshikimate = phosphate +
5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in
bacteria and plants but not animals. The enzyme is the
target of the widely used herbicide glyphosate, which
has been shown to occupy the active site. In bacteria
and plants, it is a single domain protein, while in
fungi, the domain is found as part of a multidomain
protein with functions that are all part of the
shikimate pathway.
Length = 409
Score = 262 bits (672), Expect = 2e-85
Identities = 99/230 (43%), Positives = 142/230 (61%), Gaps = 13/230 (5%)
Query: 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMK 147
+SG +T+PGSKS+S+R LLLAAL+EG + ++NLL S+D L+AL+ LG +EE+
Sbjct: 1 LSGEITVPGSKSISHRALLLAALAEGESRIENLLDSDDTLATLEALRALGAKIEEE--GG 58
Query: 148 RAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERP 207
+ G GGL E L GN+GT MR LT + GG+ +L G +R+RP
Sbjct: 59 TVEIVGGGGLGLPP-----EAVLDCGNSGTTMRLLTGLLALQGGD--SVLTGDESLRKRP 111
Query: 208 IGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLA 267
+G LV L+QLGA+++ G PP + G GGL GG+V++ G +SSQ+ +ALL+AAPLA
Sbjct: 112 MGRLVDALRQLGAEIEGREGGGYPP--LIGGGGLKGGEVEIPGAVSSQFKSALLLAAPLA 169
Query: 268 LGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYK 317
G I I +L S PY++ T +++ FG VE + ++GGQKYK
Sbjct: 170 EGPTTIIIG-ELESKPYIDHTERMLRAFGAEVEVDG-YRTITVKGGQKYK 217
Score = 36.8 bits (86), Expect = 0.013
Identities = 36/162 (22%), Positives = 64/162 (39%), Gaps = 29/162 (17%)
Query: 73 KQSKASEIVLQPIREISGT-VTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLD 131
+ I ++ ++ G T+ G S + L AA++ V+ N+ + ++D
Sbjct: 201 EVDGYRTITVKGGQKYKGPEYTVEGDASSAAFFLAAAAITGSEIVIKNVGLNSGDTGIID 260
Query: 132 ALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGG 191
LK++G ++E +VE G L + + T AV AA
Sbjct: 261 VLKEMGADIEIG-NEDTVVVESGGKLKGIDIDGNDIPDEA----------PTLAVLAA-- 307
Query: 192 NLSYILDGVPRMR----------ERPIGDLVTGLKQLGADVD 223
+G R+R +R I + T L++LGADV+
Sbjct: 308 ----FAEGPTRIRNAAELRVKESDR-IAAMATELRKLGADVE 344
Score = 34.5 bits (80), Expect = 0.062
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 106 LLAALSEGTTVVDNLLS-----SEDIHHMLDALKKLGLNVEE 142
+LAA +EG T + N S+ I M L+KLG +VEE
Sbjct: 304 VLAAFAEGPTRIRNAAELRVKESDRIAAMATELRKLGADVEE 345
>gnl|CDD|235037 PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase;
Provisional.
Length = 435
Score = 262 bits (671), Expect = 5e-85
Identities = 96/242 (39%), Positives = 145/242 (59%), Gaps = 16/242 (6%)
Query: 79 EIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGL 138
+++ P +SGTV +PGSKS+S+R LLLAAL+EG T + NLL SED L+AL+ LG+
Sbjct: 4 MLLIIPPSPLSGTVRVPGSKSISHRALLLAALAEGETTITNLLRSEDTLATLNALRALGV 63
Query: 139 NVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILD 198
+E+D +VEG GG + L GN+GT MR LT + G +L
Sbjct: 64 EIEDD----EVVVEGVGGGGLKEPEDV----LDCGNSGTTMRLLTGLLALQPGE--VVLT 113
Query: 199 GVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLT 258
G +R+RP+G L+ L+Q+GA ++ P+ I +GG GG ++ G +SSQ++
Sbjct: 114 GDESLRKRPMGRLLDPLRQMGAKIEGR-DEGYLPLTI--RGGKKGGPIEYDGPVSSQFVK 170
Query: 259 ALLMAAPL-ALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWD--RFFIQGGQK 315
+LL+ APL A G+ E +I+ L S P+ E+TL+++ FGV VE+ + W R I+GGQ+
Sbjct: 171 SLLLLAPLFAEGDTETTVIEPLPSRPHTEITLRMLRAFGVEVENVEGWGYRRIVIKGGQR 230
Query: 316 YK 317
+
Sbjct: 231 LR 232
Score = 35.5 bits (83), Expect = 0.032
Identities = 48/201 (23%), Positives = 76/201 (37%), Gaps = 44/201 (21%)
Query: 89 SGTVTLPGSKSLSNRILL-LAALSEGTTVV--DNLLSSEDIHHMLDALKKLGLNVEEDFA 145
SGT R+L L AL G V+ D L + +LD L+++G +E
Sbjct: 92 SGTTM---------RLLTGLLALQPGEVVLTGDESLRKRPMGRLLDPLRQMGAKIEG--- 139
Query: 146 MKRAIVEGCGGLFPLA---KQQTGEIEL-------FLGNAGTAMRPLTAAVTAAGGNLSY 195
G L PL ++ G IE F+ ++ L A + A G +
Sbjct: 140 ------RDEGYL-PLTIRGGKKGGPIEYDGPVSSQFV----KSLL-LLAPLFAEGDTETT 187
Query: 196 ILDGVPRMRERP-IGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSS 254
+ + + RP + L+ G +V+ + G + I G L G + + G SS
Sbjct: 188 V---IEPLPSRPHTEITLRMLRAFGVEVENVEGWGYRRIVIKGGQRLRGQDITVPGDPSS 244
Query: 255 QYLTALLMAAPLALGNVEIEI 275
A +AA G E+ I
Sbjct: 245 ---AAFFLAAAAITGGSEVTI 262
Score = 31.3 bits (72), Expect = 0.69
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 106 LLAALSEGTTVVDNLLS-----SEDIHHMLDALKKLGLNVEE 142
+LAA +EGTTV+ N ++ I M L+KLG VEE
Sbjct: 328 VLAAFAEGTTVIRNAEELRVKETDRIAAMATELRKLGAEVEE 369
>gnl|CDD|233373 TIGR01356, aroA, 3-phosphoshikimate 1-carboxyvinyltransferase.
This model represents
3-phosphoshikimate-1-carboxyvinyltransferase (aroA),
which catalyzes the sixth of seven steps in the
shikimate pathway of the biosynthesis of chorimate.
Chorismate is last common precursor of all three
aromatic amino acids. Sequences scoring between the
trusted and noise cutoffs include fragmentary and
aberrant sequences in which generally well-conserved
motifs are missing or altererd, but no example of a
protein known to have a different function [Amino acid
biosynthesis, Aromatic amino acid family].
Length = 409
Score = 249 bits (637), Expect = 2e-80
Identities = 106/229 (46%), Positives = 139/229 (60%), Gaps = 16/229 (6%)
Query: 90 GTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRA 149
G + PGSKS+++R L+LAAL+EG T V NLL SED LDAL+ LG +E+ + A
Sbjct: 1 GEIRAPGSKSITHRALILAALAEGETRVRNLLRSEDTLATLDALRALGAKIEDG--GEVA 58
Query: 150 IVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIG 209
++EG GG P + EL LGN+GT R LT + A G +L G +R+RP+G
Sbjct: 59 VIEGVGGKEP-------QAELDLGNSGTTARLLTGVLALADGE--VVLTGDESLRKRPMG 109
Query: 210 DLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALG 269
LV L+QLGA++ + G P+ I G LPGG V +SG SSQY +ALL+AAP AL
Sbjct: 110 RLVDALRQLGAEISSLEGGGSLPLTI--SGPLPGGIVYISGSASSQYKSALLLAAP-ALQ 166
Query: 270 NVEIEI-IDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYK 317
V I I + L S PY+E+TL L+ FGV VE SD + + GGQKY
Sbjct: 167 AVGITIVGEPLKSRPYIEITLDLLGSFGVEVERSDG-RKIVVPGGQKYG 214
Score = 34.2 bits (79), Expect = 0.076
Identities = 42/176 (23%), Positives = 65/176 (36%), Gaps = 45/176 (25%)
Query: 89 SGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSE---DIHHMLDALKKLGLNVEEDFA 145
+PG S + L AA++ G ++NL + D ++ L+++G ++E
Sbjct: 215 PQGYDVPGDYSSAAFFLAAAAITGGRVTLENLGINPTQGDK-AIIIVLEEMGADIE--VE 271
Query: 146 MKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMR- 204
IVEG GL + I+ T AV AA +GV R+
Sbjct: 272 EDDLIVEGASGLKGIKIDMDDMIDEL----------PTLAVLAA------FAEGVTRITG 315
Query: 205 ---------ERPIGDLVTGLKQLGADV----DCILGTNCPPVRINGKGGLPGGKVK 247
+R I + L++LG DV D + I GK L G V
Sbjct: 316 AEELRVKESDR-IAAIAEELRKLGVDVEEFEDGLY--------IRGKKELKGAVVD 362
>gnl|CDD|223206 COG0128, AroA, 5-enolpyruvylshikimate-3-phosphate synthase [Amino
acid transport and metabolism].
Length = 428
Score = 243 bits (622), Expect = 1e-77
Identities = 94/242 (38%), Positives = 135/242 (55%), Gaps = 12/242 (4%)
Query: 76 KASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKK 135
++ + GTV PGSKS+S+R LLLAAL+EG + + NLL SED L+AL+
Sbjct: 1 MEKLTLVVKPSPLRGTVRAPGSKSISHRALLLAALAEGESTITNLLDSEDTLATLEALRA 60
Query: 136 LGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSY 195
LG +E++ +V G GG L GN+GT +R LT + +
Sbjct: 61 LGARIEKEGD--TLVVRGTGGELK-----EPPAVLDCGNSGTTLRLLTGLLALGSPGET- 112
Query: 196 ILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQ 255
+L G +R+RP+G LV L+QLGA +D G P+ I KGGL GG+V++ G +SSQ
Sbjct: 113 VLTGDESLRKRPMGPLVDALRQLGAKIDGREGEGYLPLTI--KGGLKGGEVEIDGPVSSQ 170
Query: 256 YLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK 315
+++LL+ APL I + L S PY++ TL +++ FGV VE+ RF+I GGQK
Sbjct: 171 QVSSLLLLAPLLAEGTTIIVGGVLESKPYIDHTLDMLKAFGVEVENEG--YRFYIPGGQK 228
Query: 316 YK 317
Sbjct: 229 LT 230
Score = 39.1 bits (92), Expect = 0.002
Identities = 38/168 (22%), Positives = 62/168 (36%), Gaps = 30/168 (17%)
Query: 89 SGTVTLPGSKSLSNRILLLAALSEGTTVV--DNLLSSEDIHHMLDALKKLGLNVEEDFAM 146
G +PG S + L AA++ +T + N+ + +LD L+K+G ++E
Sbjct: 231 PGDYDVPGDYSSAAFFLAAAAITPRSTGITLKNVQPNPTDKGILDVLEKMGADIEIG-DD 289
Query: 147 KRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMR-- 204
V G G L + +L T AV AA + + +R
Sbjct: 290 SVLRVRGSGELKGIEVDMDDMPDLAP----------TLAVLAAFAEGTTRIRNAEELRVK 339
Query: 205 --ERPIGDLVTGLKQLGADV----DCILGTNCPPVRINGKGGLPGGKV 246
+R I + T L++LG +V D + I G L G
Sbjct: 340 ESDR-IAAMATELRKLGVEVEETEDGL--------IITGGTKLKGAGT 378
>gnl|CDD|215834 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshikimate
1-carboxyvinyltransferase).
Length = 415
Score = 237 bits (608), Expect = 6e-76
Identities = 97/236 (41%), Positives = 135/236 (57%), Gaps = 14/236 (5%)
Query: 82 LQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVE 141
+ ++G V +PGSKS S+R LLLAAL+ G + + NLL S+D ML+AL+ LG V
Sbjct: 1 VTGGSRLNGEVKVPGSKSNSHRALLLAALAAGESTITNLLDSDDTRLMLEALRALGAEVI 60
Query: 142 EDFAMK-RAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGV 200
E K IVEG GG F E+ L LGN+GTAMRPL A + +L G
Sbjct: 61 ELDEEKTVVIVEGLGGSFEAPY----ELVLDLGNSGTAMRPLLGR--LALQSGEVVLTGD 114
Query: 201 PRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTAL 260
+ ERPI L+ GL+QLGA+++ G P+++ GL G V + G +SSQ++T+L
Sbjct: 115 DSIGERPIDRLLDGLRQLGAEIEYREGYGYAPLKVR---GLKLGGVHIDGSISSQFVTSL 171
Query: 261 LMAAP-LALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK 315
LM A LA G IE L S PY++ T ++ +FG +E S + +I+GGQK
Sbjct: 172 LMLAALLAEGTTIIE---NLASEPYIDDTENMLNKFGAKIEGSGTETSIYIKGGQK 224
Score = 42.6 bits (101), Expect = 1e-04
Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 10/120 (8%)
Query: 104 ILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQ 163
++L A L+EGTT+++NL S I + L K G +E ++G L
Sbjct: 172 LMLAALLAEGTTIIENLASEPYIDDTENMLNKFGAKIEGSGTETSIYIKGGQKL----PG 227
Query: 164 QTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVD 223
+E +A + AA GG + ++ V + L+++GA++
Sbjct: 228 VEYRVEGDRSSAAYFL----AAAAITGGTV--KVENVGINSLQGDRAADEILEKMGAEIT 281
Score = 29.2 bits (66), Expect = 3.0
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 106 LLAALSEGTTVVDNLLS-----SEDIHHMLDALKKLGLNVEE 142
+ AA +EGT+ ++ + ++ + M L+KLG VEE
Sbjct: 314 VQAAFAEGTSRIEGISELRVKETDRLFAMATELRKLGAEVEE 355
>gnl|CDD|183343 PRK11861, PRK11861, bifunctional prephenate
dehydrogenase/3-phosphoshikimate
1-carboxyvinyltransferase; Provisional.
Length = 673
Score = 202 bits (515), Expect = 6e-60
Identities = 120/239 (50%), Positives = 148/239 (61%), Gaps = 13/239 (5%)
Query: 82 LQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVE 141
L P GTV LPGSKS+SNR+LLLAAL+EG T V NLL S+D MLDAL KLG+ +
Sbjct: 245 LGPFSHAQGTVRLPGSKSISNRVLLLAALAEGETTVTNLLDSDDTRVMLDALTKLGVKLS 304
Query: 142 EDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVP 201
D +V G G F +LFLGNAGTA+RPLTAA+ GG Y + GVP
Sbjct: 305 RD--GGTCVVGGTRGAF-----TAKTADLFLGNAGTAVRPLTAALAVNGGE--YRIHGVP 355
Query: 202 RMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALL 261
RM ERPIGDLV GL+Q+GA +D PP+RI +++ G +SSQ+LTALL
Sbjct: 356 RMHERPIGDLVDGLRQIGARIDYEGNEGFPPLRIRPATISVDAPIRVRGDVSSQFLTALL 415
Query: 262 MAAPLAL---GNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYK 317
M PL G +EI +LIS PY+E+T+KLM RFGV VE D W RF + G +Y+
Sbjct: 416 MTLPLVKAKDGASVVEIDGELISKPYIEITIKLMARFGVTVER-DGWQRFTVPAGVRYR 473
>gnl|CDD|238795 cd01554, EPT-like, Enol pyruvate transferases family includes EPSP
synthases and UDP-N-acetylglucosamine enolpyruvyl
transferase. Both enzymes catalyze the reaction of
enolpyruvyl transfer.
Length = 408
Score = 164 bits (416), Expect = 1e-47
Identities = 65/229 (28%), Positives = 108/229 (47%), Gaps = 14/229 (6%)
Query: 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMK 147
+ G + +PG KS+S+R L+ A+L+EG T V N+L ED+ + L+ LG+ +E+
Sbjct: 1 LHGIIRVPGDKSISHRSLIFASLAEGETKVYNILRGEDVLSTMQVLRDLGVEIEDKDG-- 58
Query: 148 RAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERP 207
++G G K + L LGN+GTA+R ++ + A + L G + +RP
Sbjct: 59 VITIQGVGM--AGLKA--PQNALNLGNSGTAIRLISGVLAGADFEVE--LFGDDSLSKRP 112
Query: 208 IGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLA 267
+ + LK++GA + + PP+ GK G S+Q +AL+ AA LA
Sbjct: 113 MDRVTLPLKKMGASISGQEERDLPPLLKGGK--NLGPIHYEDPIASAQVKSALMFAALLA 170
Query: 268 LGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKY 316
G I P + T +++ FG + + +QG QK
Sbjct: 171 KGETVIIE---AAKEPTINHTENMLQTFGGHIS-VQGTKKIVVQGPQKL 215
>gnl|CDD|237820 PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/
3-phosphoshikimate 1-carboxyvinyltransferase;
Provisional.
Length = 735
Score = 77.0 bits (190), Expect = 1e-15
Identities = 52/166 (31%), Positives = 86/166 (51%), Gaps = 14/166 (8%)
Query: 81 VLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNV 140
+ P + GT+ +PG KS+S+R ++L +L+EG T V+ L ED L A + +G+ +
Sbjct: 305 SVLPGGAVKGTIRVPGDKSISHRSIMLGSLAEGVTEVEGFLEGEDALATLQAFRDMGVVI 364
Query: 141 EEDFAMKRAIVEGCG--GLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILD 198
E R + G G GL K G L++GN+GT+MR L+ + A + +L
Sbjct: 365 EGPHN-GRVTIHGVGLHGL----KAPPG--PLYMGNSGTSMRLLSGLL--AAQSFDSVLT 415
Query: 199 GVPRMRERPIGDLVTGLKQLGADVDCILGTNC-PPVRINGKGGLPG 243
G + +RP+ + L+++GA ++ G PP+ I G L G
Sbjct: 416 GDASLSKRPMERVAKPLREMGAVIET--GEEGRPPLSIRGGQRLKG 459
>gnl|CDD|238796 cd01555, UdpNAET, UDP-N-acetylglucosamine enolpyruvyl transferase
catalyzes enolpyruvyl transfer as part of the first step
in the biosynthesis of peptidoglycan, a component of the
bacterial cell wall. The reaction is phosphoenolpyruvate
+ UDP-N-acetyl-D-glucosamine = phosphate +
UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This
enzyme is of interest as a potential target for
anti-bacterial agents. The only other known enolpyruvyl
transferase is the related
5-enolpyruvylshikimate-3-phosphate synthase.
Length = 400
Score = 46.7 bits (112), Expect = 7e-06
Identities = 56/211 (26%), Positives = 88/211 (41%), Gaps = 48/211 (22%)
Query: 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMK 147
+SG V + G+K+ + IL A L++ + N+ D+ M++ L+ LG VE +
Sbjct: 1 LSGEVRISGAKNAALPILAAALLTDEPVTLRNVPDLLDVETMIELLRSLGAKVEFEGENT 60
Query: 148 RAI----VEGCGGLFPLAKQQTGEIELFLGNAGTAMRPL-----TAAVTAAGG-NLSYIL 197
I + + L ++ I L LG PL A V+ GG +
Sbjct: 61 LVIDASNINSTEAPYELVRKMRASI-LVLG-------PLLARFGEARVSLPGGCAI---- 108
Query: 198 DGVPRMRERPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQY 256
G RP+ DL + GL+ LGA ++ + V G L G ++ L S
Sbjct: 109 -G-----ARPV-DLHLKGLEALGAKIE--IEDGY--VEAKAAGRLKGARIYL--DFPS-- 153
Query: 257 LTA---LLMAAPLALGNVEI-------EIID 277
+ A ++MAA LA G I EI+D
Sbjct: 154 VGATENIMMAAVLAEGTTVIENAAREPEIVD 184
Score = 28.2 bits (64), Expect = 5.9
Identities = 49/199 (24%), Positives = 75/199 (37%), Gaps = 44/199 (22%)
Query: 125 DIHHMLDALKKLGLNVEEDFAMKRAIVEG--CGGLFPLAKQQTGEIELFLGNAGTAMRPL 182
D+H L L+ LG +E + A G G L G E N +
Sbjct: 114 DLH--LKGLEALGAKIEIEDGYVEAKAAGRLKGARIYLDFPSVGATE----NI------M 161
Query: 183 TAAVTAAGGNLSYILDGVPRM----RERPIGDLVTGLKQLGADVDCILGTNCPPVRINGK 238
AAV A +G + RE I DL L ++GA ++ GT+ +RI G
Sbjct: 162 MAAVLA---------EGTTVIENAAREPEIVDLANFLNKMGAKIEGA-GTDT--IRIEGV 209
Query: 239 GGLPGGKVKLSGKLSSQYLTA--LLMAAPLALGNVEIE--IIDKLISVPYVEMTLKLMER 294
L G + + + A L+AA + G++ +E I + L +V L +
Sbjct: 210 ERLHGAEH----TVIPDRIEAGTFLVAAAITGGDITVENVIPEHLEAV------LAKLRE 259
Query: 295 FGVFVEHSDSWDRFFIQGG 313
G +E + R GG
Sbjct: 260 MGAKIEIGEDGIRVDGDGG 278
Score = 28.2 bits (64), Expect = 6.8
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 15/62 (24%)
Query: 244 GKVKLSG-KLSSQYLTALLMAAPLALGNVEIE----IIDKLISVPYVEMTLKLMERFGVF 298
G+V++SG K ++ +L AA L V + ++D VE ++L+ G
Sbjct: 3 GEVRISGAKNAA---LPILAAALLTDEPVTLRNVPDLLD-------VETMIELLRSLGAK 52
Query: 299 VE 300
VE
Sbjct: 53 VE 54
>gnl|CDD|223837 COG0766, MurA, UDP-N-acetylglucosamine enolpyruvyl transferase
[Cell envelope biogenesis, outer membrane].
Length = 421
Score = 41.7 bits (99), Expect = 3e-04
Identities = 53/220 (24%), Positives = 89/220 (40%), Gaps = 66/220 (30%)
Query: 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMK 147
++G VT+ G+K+ + +L L++ + N+ D+ ML+ L+ LG VE D
Sbjct: 12 LNGEVTISGAKNAALPLLAATLLADEPVTLTNVPDLSDVETMLELLRNLGAKVERD---- 67
Query: 148 RAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRP------LTAAVTAAGGNLSYILDGVP 201
GE+E+ N + P + A++ G L+
Sbjct: 68 ----------------GDGELEIDAPNINSTEAPYELVRKMRASILVLGPLLA------- 104
Query: 202 RMRE-------------RPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVK 247
R + RP+ DL + GL+ LGA+++ I + + GL G +
Sbjct: 105 RFGKAKVSLPGGCAIGARPV-DLHLKGLEALGAEIE-IEHGY---IEASAPKGLKGAHIY 159
Query: 248 LSGKLSSQYLTA---LLMAAPLALGNVEI-------EIID 277
L K+S + A ++MAA LA G I EI+D
Sbjct: 160 LD-KVS---VGATENIMMAAVLAEGTTVIENAAREPEIVD 195
Score = 29.0 bits (66), Expect = 4.0
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 14/71 (19%)
Query: 234 RINGKGGLPGGKVKLSG-KLSSQYLTALLMAAPLALGNVEIEIIDKLISVPY---VEMTL 289
I G G G+V +SG K ++ LL A LA V + +VP VE L
Sbjct: 5 IIEG-GNPLNGEVTISGAKNAA---LPLLAATLLADEPVTLT------NVPDLSDVETML 54
Query: 290 KLMERFGVFVE 300
+L+ G VE
Sbjct: 55 ELLRNLGAKVE 65
>gnl|CDD|162190 TIGR01072, murA, UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
[Cell envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 416
Score = 39.9 bits (94), Expect = 0.001
Identities = 56/205 (27%), Positives = 85/205 (41%), Gaps = 37/205 (18%)
Query: 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEED---F 144
+SG VT+ G+K+ + I+ L++ + N+ D+ LD L+ LG VE D
Sbjct: 12 LSGEVTISGAKNAALPIIAATLLTDEPVTLTNVPDLSDVKTTLDLLRNLGARVERDNNTL 71
Query: 145 AMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPL-----TAAVTAAGGNLSYILDG 199
+ + + L ++ I L LG PL A V+ GG
Sbjct: 72 EINTPNINSTEAPYELVRKMRASI-LVLG-------PLLARFGKAVVSLPGGCA------ 117
Query: 200 VPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTA 259
+ RP+ + GLK LGA++ G V + KG L G + L K+S
Sbjct: 118 ---IGARPVDLHLKGLKALGAEIVIEDGY----VYASAKGRLVGAHIVLD-KVSVGATEN 169
Query: 260 LLMAAPLALGNV-------EIEIID 277
++MAA LA G E EI+D
Sbjct: 170 IIMAAVLAEGTTVIENAAREPEIVD 194
Score = 33.7 bits (78), Expect = 0.12
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 104 ILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGL 157
I++ A L+EGTTV++N +I + + L K+G + +EG L
Sbjct: 170 IIMAAVLAEGTTVIENAAREPEIVDLCEFLNKMGAKITGA-GSNTITIEGVEKL 222
Score = 30.3 bits (69), Expect = 1.5
Identities = 55/242 (22%), Positives = 90/242 (37%), Gaps = 51/242 (21%)
Query: 73 KQSKASEIVLQPI--REISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHML 130
++ +AS +VL P+ R V+LPG ++ R + D+H L
Sbjct: 89 RKMRASILVLGPLLARFGKAVVSLPGGCAIGARPV-------------------DLH--L 127
Query: 131 DALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAG 190
LK LG + + A +G + I L + G + AAV A G
Sbjct: 128 KGLKALGAEIVIEDGYVYASAKG--------RLVGAHIVLDKVSVGATENIIMAAVLAEG 179
Query: 191 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSG 250
+ +++ R E I DL L ++GA I G + I G L G + +
Sbjct: 180 ---TTVIENAAR--EPEIVDLCEFLNKMGAK---ITGAGSNTITIEGVEKLHGTEHSV-- 229
Query: 251 KLSSQYLTA-LLMAAPLALGNVEIE--IIDKLISVPYVEMTLKLMERFGVFVEHSDSWDR 307
+ + L+AA + G + I+ D L +V L + G VE ++ R
Sbjct: 230 -IPDRIEAGTFLVAAAITGGEITIKNVRPDHLRAV------LAKLREIGAEVEVDENGIR 282
Query: 308 FF 309
Sbjct: 283 VD 284
>gnl|CDD|236486 PRK09369, PRK09369, UDP-N-acetylglucosamine
1-carboxyvinyltransferase; Validated.
Length = 417
Score = 38.5 bits (91), Expect = 0.003
Identities = 61/223 (27%), Positives = 86/223 (38%), Gaps = 72/223 (32%)
Query: 88 ISGTVTLPGSKSLSNRIL-LLAA--LSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDF 144
+SG VT+ G+K N L +LAA L+E + N+ D+ M++ L+ LG VE F
Sbjct: 12 LSGEVTISGAK---NAALPILAASLLAEEPVTLTNVPDLSDVRTMIELLRSLGAKVE--F 66
Query: 145 AMKRAIVEGCGGL------FPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILD 198
+ + + L K+ I L LG PL A
Sbjct: 67 DGNGTVTIDASNINNTEAPYELVKKMRASI-LVLG-------PLLA-------------- 104
Query: 199 GVPRMRE-------------RPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGGLPGG 244
R E RP+ DL + GL+ LGA+++ G V G L G
Sbjct: 105 ---RFGEAKVSLPGGCAIGARPV-DLHLKGLEALGAEIEIEHGY----VEAKADGRLKGA 156
Query: 245 KVKLSGKLSSQYLTA---LLMAAPLALGNVEI-------EIID 277
+ L S + A +LMAA LA G I EI+D
Sbjct: 157 HIVLD-FPS---VGATENILMAAVLAEGTTVIENAAREPEIVD 195
Score = 30.4 bits (70), Expect = 1.4
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 16/46 (34%)
Query: 105 LLLAALS-EGTTVVDNLLSSEDIHHMLD--------ALKKLGLNVE 141
L+LA L EGTT+VD I+H LD L+ LG ++E
Sbjct: 377 LVLAGLVAEGTTIVDR------IYH-LDRGYERIEEKLRALGADIE 415
>gnl|CDD|183779 PRK12830, PRK12830, UDP-N-acetylglucosamine
1-carboxyvinyltransferase; Reviewed.
Length = 417
Score = 33.7 bits (78), Expect = 0.12
Identities = 18/56 (32%), Positives = 35/56 (62%)
Query: 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEED 143
+SG VT+ G+K+ + ++ A L++G +D + D+H ++D L++LG V+ D
Sbjct: 12 LSGEVTISGAKNSAVALIPAAILADGPVTLDGVPDISDVHSLVDILEELGGKVKRD 67
>gnl|CDD|188107 TIGR01086, fucA, L-fuculose phosphate aldolase. Members of this
family are L-fuculose phosphate aldolase from various
Proteobacteria, encoded in fucose utilization operons.
Homologs in other bacteria given similar annotation but
scoring below the trusted cutoff may share extensive
sequence similarity but are not experimenally
characterized and are not found in apparent fucose
utilization operons; we consider their annotation as
L-fuculose phosphate aldolase to be tenuous. This model
has been narrowed in scope from the previous version
[Energy metabolism, Sugars].
Length = 214
Score = 31.1 bits (70), Expect = 0.60
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 58 TVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVV 117
T + + ++ V T K+SKA I+LQ I+ V L + L++ + +LA+L T +
Sbjct: 129 TFGSHKLASYVATGIKESKA--ILLQHHGLIACEVNLEKALWLAHEVEVLASLYLKTLAI 186
Query: 118 DN---LLSSEDIHHMLDALKKLGLNVEE 142
+LS E + +L K GL +EE
Sbjct: 187 TLEVPVLSKEQMAVVLGKFKTYGLRIEE 214
>gnl|CDD|214954 smart00984, UDPG_MGDP_dh_C, UDP binding domain. The
UDP-glucose/GDP-mannose dehydrogenases are a small group
of enzymes which possesses the ability to catalyse the
NAD-dependent 2-fold oxidation of an alcohol to an acid
without the release of an aldehyde intermediate.
Length = 99
Score = 29.0 bits (66), Expect = 1.1
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 199 GVPRMRERPIGDLVTGLKQLGADVD 223
+RE P D++ L + GA+V
Sbjct: 10 NTDDLRESPALDIIEELLEAGAEVV 34
>gnl|CDD|233065 TIGR00634, recN, DNA repair protein RecN. All proteins in this
family for which functions are known are ATP binding
proteins involved in the initiation of recombination and
recombinational repair [DNA metabolism, DNA replication,
recombination, and repair].
Length = 563
Score = 29.7 bits (67), Expect = 2.1
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 131 DALKKLGLNVEED---FAMKRAI--VEGCGGLFPLAKQQTGE------IELFLGNAGTAM 179
A ++L VE++ AM++A VE L AK + G LF N G +
Sbjct: 375 KAAERLAKRVEQELKALAMEKAEFTVEIKTSLPSGAKARAGAYGADQVEFLFSANTGEPV 434
Query: 180 RPLTAAVTAAGGNLSYIL 197
+PL A A+GG LS ++
Sbjct: 435 KPL--AKVASGGELSRVM 450
>gnl|CDD|221320 pfam11927, DUF3445, Protein of unknown function (DUF3445). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 264 to 418
amino acids in length. This protein has a conserved RLP
sequence motif. This protein has two completely
conserved R residues that may be functionally important.
Length = 245
Score = 28.7 bits (65), Expect = 3.3
Identities = 26/107 (24%), Positives = 35/107 (32%), Gaps = 37/107 (34%)
Query: 113 GTTVVDNLLSSEDIH----HMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEI 168
G N L+ E D L+ LG V+EDF I++ + +
Sbjct: 72 GDRTWHNRLTGETFPLTAGDPEDPLETLGRLVQEDF----LILD-----------KDEDG 116
Query: 169 ELFLGNAGTAMRPLTAAVTAAGG---------NLSYILDGVPRMRER 206
E FL A AV G LS I VP +E+
Sbjct: 117 EYFL----RA-----GAVCFPAGWSLADKIGMPLSEIHGPVPGYKEK 154
>gnl|CDD|216322 pfam01137, RTC, RNA 3'-terminal phosphate cyclase. RNA cyclases
are a family of RNA-modifying enzymes that are conserved
in all cellular organisms. They catalyze the
ATP-dependent conversion of the 3'-phosphate to the
2',3'-cyclic phosphodiester at the end of RNA, in a
reaction involving formation of the covalent AMP-cyclase
intermediate. The structure of RTC demonstrates that
RTCs are comprised two domain. The larger domain
contains an insert domain of approximately 100 amino
acids.
Length = 330
Score = 29.1 bits (66), Expect = 3.3
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 256 YLTALLMAAPLALGNVEIEII-----DKLISVPYVEM-TLKLMERFGVFVE 300
L LL A G I + V Y+ TL L+E+FG+ E
Sbjct: 95 VLQTLLPLLLFAKGPSRITLKGGTDVPWAPPVDYIRNVTLPLLEKFGIEGE 145
>gnl|CDD|181226 PRK08087, PRK08087, L-fuculose phosphate aldolase; Provisional.
Length = 215
Score = 28.6 bits (64), Expect = 3.8
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 58 TVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVV 117
T T S V A K KA +LQ I+ V L + L++ + +LA L T +
Sbjct: 130 TFGTRELSEHVALALKNRKA--TLLQHHGLIACEVNLEKALWLAHEVEVLAQLYLKTLAI 187
Query: 118 DN---LLSSEDIHHMLDALKKLGLNVEE 142
+ +LS E+I +L+ K GL +EE
Sbjct: 188 TDPVPVLSDEEIAVVLEKFKTYGLRIEE 215
>gnl|CDD|235840 PRK06599, PRK06599, DNA topoisomerase I; Validated.
Length = 675
Score = 28.7 bits (65), Expect = 4.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 134 KKLGLNVEEDFAMKRAIVEG 153
KK G++ + DFA K I+EG
Sbjct: 40 KKGGVDPDNDFAPKYEIIEG 59
>gnl|CDD|225459 COG2907, COG2907, Predicted NAD/FAD-binding protein [General
function prediction only].
Length = 447
Score = 28.6 bits (64), Expect = 4.4
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Query: 199 GVPRMRERPIGDLVTG-----LKQLGADVDCILGTNCPPVRINGKGGLPGGKV 246
G+ + +RP V G +++L AD+ + T P R+ LP G V
Sbjct: 202 GLLYLPKRPTWRTVAGGSRAYVQRLAADIRGRIETRTPVCRLR---RLPDGVV 251
>gnl|CDD|222472 pfam13954, PapC_N, PapC N-terminal domain. The PapC N-terminal
domain is a structural domain found at the N-terminus of
the E. coli PapC protein. Pili are assembled using the
chaperone usher system. In E.coli this is composed of
the chaperone PapD and the usher PapC. This domain
represents the N-terminal domain from PapC and its
homologues. This domain is involved in substrate
binding.
Length = 145
Score = 27.7 bits (62), Expect = 5.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 133 LKKLGLNVEEDFAMKRAIVEGC 154
L KLG+N+E A++++ E C
Sbjct: 66 LSKLGINIEAFPALQQSNDEQC 87
>gnl|CDD|226243 COG3720, HemS, Putative heme degradation protein [Inorganic ion
transport and metabolism].
Length = 349
Score = 28.6 bits (64), Expect = 5.0
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 10/60 (16%)
Query: 125 DIHHMLDALKKLGLN-------VEEDFAMKRAIVEGC-GGLFPLAKQQTGEIELFLGNAG 176
D+H LK+ L V +D A + + + A + I +F+GN G
Sbjct: 198 DVHQFFGLLKRHNLTRQQALRLVGDDLAWR--VDNSALAQMLESAAEDGLPIMVFVGNRG 255
>gnl|CDD|217162 pfam02645, DegV, Uncharacterized protein, DegV family COG1307. The
structure of this protein revealed a bound fatty-acid
molecule in a pocket between the two protein domains.
The structure indicates that this family has the
molecular function of fatty-acid binding and may play a
role in the cellular functions of fatty acid transport
or metabolism.
Length = 211
Score = 27.6 bits (62), Expect = 6.6
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 248 LSGKLSSQYLTALLMAAPLALGNVEIEIID-KLISVPYVEMTLKLME 293
+S LS Y +A L V++ +ID K +S+ + L+
Sbjct: 18 ISSGLSGTYQSAKQAKE--ELPGVKVRVIDSKSVSMGLGLLVLEAAR 62
>gnl|CDD|218763 pfam05817, Ribophorin_II, Oligosaccharyltransferase subunit
Ribophorin II. This family contains eukaryotic
Ribophorin II (RPN2) proteins. The mammalian
oligosaccharyltransferase (OST) is a protein complex
that effects the cotranslational N-glycosylation of
newly synthesised polypeptides, and is composed of the
following proteins: ribophorins I and II (RI and RII),
OST48, and Dadl, N33/IAP, OST4, STT3. The family also
includes the SWP1 protein from yeast. In yeast the
oligosaccharyltransferase complex is composed 7 or 8
subunits, SWP1, being one of them.
Length = 636
Score = 28.2 bits (63), Expect = 7.2
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 19/98 (19%)
Query: 103 RILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAK 162
R LLLAA+SE ++++ I++ + +L LGL V D + +++ L
Sbjct: 111 RDLLLAAVSEDSSLLQ-------IYYAVGSLSSLGLPV--DLPDSQEVLKA------LKA 155
Query: 163 QQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGV 200
+ E + AG A+ TAA + +L+ I+D +
Sbjct: 156 SLSKEDSVL--AAGHAL--ETAAELSQQADLADIVDEI 189
>gnl|CDD|236880 PRK11198, PRK11198, LysM domain/BON superfamily protein;
Provisional.
Length = 147
Score = 27.2 bits (61), Expect = 7.4
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 243 GGKVKLSGKLSSQYLTALLMAAPLALGNVE-IEIIDKLISVP 283
GK +SG +SQ LA+GN++ I +D + V
Sbjct: 51 DGKATVSGDAASQ---EAKEKILLAVGNIQGIASVDDQVKVA 89
>gnl|CDD|233256 TIGR01063, gyrA, DNA gyrase, A subunit. This model describes the
common type II DNA topoisomerase (DNA gyrase). Two
apparently independently arising families, one in the
Proteobacteria and one in Gram-positive lineages, are
both designated toposisomerase IV [DNA metabolism, DNA
replication, recombination, and repair].
Length = 800
Score = 28.0 bits (63), Expect = 7.4
Identities = 13/61 (21%), Positives = 19/61 (31%)
Query: 27 KSVSAISFRSQSRGCSSSWGLRYNDRLGNNNTVRTVRASASVGTAEKQSKASEIVLQPIR 86
K S +R SRG ++ DR G V + K +Q +
Sbjct: 713 KRTSIEEYRETSRGGKGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQDVS 772
Query: 87 E 87
E
Sbjct: 773 E 773
>gnl|CDD|237291 PRK13168, rumA, 23S rRNA m(5)U1939 methyltransferase; Reviewed.
Length = 443
Score = 27.8 bits (63), Expect = 8.6
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 5/30 (16%)
Query: 161 AKQQTGEIELFLGNAGTAM--R---PLTAA 185
AK++ G +EL G+ GTA+ R PL+ A
Sbjct: 191 AKRRLGHVELAQGDNGTALVLRHLEPLSEA 220
>gnl|CDD|213558 TIGR00762, DegV, EDD domain protein, DegV family. This family of
proteins is related to DegV of Bacillus subtilis and
includes paralogous sets in several species (B.
subtilis, Deinococcus radiodurans, Mycoplasma
pneumoniae) that are closer in percent identity to each
than to most homologs from other species. This suggests
both recent paralogy and diversity of function. DegV
itself is encoded immediately downstream of DegU, a
transcriptional regulator of degradation, but is itself
uncharacterized. Crystallography suggested a
lipid-binding site, while comparison of the crystal
structure to dihydroxyacetone kinase and to a mannose
transporter EIIA domain suggests a conserved domain,
EDD, with phosphotransferase activity [Unknown function,
General].
Length = 275
Score = 27.4 bits (62), Expect = 8.9
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 248 LSGKLSSQYLTALLMAAPLALGNVEIEIID-KLIS 281
LS LS Y +A AA + ++ +ID K S
Sbjct: 86 LSSGLSGTYQSA-RQAAEMVDEA-KVTVIDSKSAS 118
>gnl|CDD|109884 pfam00846, Hanta_nucleocap, Hantavirus nucleocapsid protein.
Length = 428
Score = 27.6 bits (61), Expect = 9.1
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 61 TVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNL 120
T+ AS +VGTAE++ K Q + ++ + L RI++L ++ G V++
Sbjct: 340 TIMASKTVGTAEEKLKKKSAFYQSYLRRTQSMGI----QLDQRIIILYMVAWGKEAVNHF 395
Query: 121 LSSEDI 126
+D+
Sbjct: 396 HLGDDM 401
>gnl|CDD|224226 COG1307, DegV, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 282
Score = 27.6 bits (62), Expect = 9.1
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 248 LSGKLSSQYLTALLMAAPLALGNVEIEIID-KLISVPYVEMTLKLME 293
+S LS Y +A L A + ++ +ID K +S+ + L+ E
Sbjct: 89 ISSGLSGTYQSAQLAAE--LVEGAKVHVIDSKSVSMGLGFLVLEAAE 133
>gnl|CDD|224414 COG1497, COG1497, Predicted transcriptional regulator
[Transcription].
Length = 260
Score = 27.3 bits (61), Expect = 9.1
Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 24/101 (23%)
Query: 69 GTAEKQSKASEIVLQPIREISGT----------VTLPGSKSLSNRILLLAALSEGTTVVD 118
G A ++ E V I EI G V +PG +R + L L E
Sbjct: 132 GVALTDAEKGEDV--GITEIGGMIDVEKGEVTIVKVPGVAEGGSRKVDLDRLKE------ 183
Query: 119 NLLSSEDI-----HHMLDALKKLGLNVEEDFAMKRAIVEGC 154
L +SEDI L AL+KLG+ + +F A +E
Sbjct: 184 -LSASEDIIAAMGTEALVALRKLGIEPDIEFGTLEAAIEAA 223
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.381
Gapped
Lambda K H
0.267 0.0832 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,771,485
Number of extensions: 1531199
Number of successful extensions: 1658
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1594
Number of HSP's successfully gapped: 65
Length of query: 317
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 220
Effective length of database: 6,635,264
Effective search space: 1459758080
Effective search space used: 1459758080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.3 bits)