RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 021126
(317 letters)
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB:
1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A*
1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A*
2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ...
Length = 450
Score = 329 bits (845), Expect = e-111
Identities = 125/248 (50%), Positives = 159/248 (64%), Gaps = 8/248 (3%)
Query: 70 TAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHM 129
+ + + LQPI ISG V LPGSKS+SNR LLLAAL+ GTT + NLL S+DI HM
Sbjct: 18 LYFQSNAMESLTLQPIELISGEVNLPGSKSVSNRALLLAALASGTTRLTNLLDSDDIRHM 77
Query: 130 LDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAA 189
L+AL KLG+N VEG G F +ELFLGNAGTAMRPL AA+
Sbjct: 78 LNALTKLGVNYRLSADKTTCEVEGLGQAFHTT----QPLELFLGNAGTAMRPLAAALCLG 133
Query: 190 GGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLS 249
G+ Y+L G PRM+ERPIG LV L+Q GA ++ + N PP+RI G GL G V +
Sbjct: 134 QGD--YVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPPLRIQGT-GLQAGTVTID 190
Query: 250 GKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFF 309
G +SSQ+LTA LM+APLA G V I+I+ +L+S PY+++TL +ME+FGV V + D + F
Sbjct: 191 GSISSQFLTAFLMSAPLAQGKVTIKIVGELVSKPYIDITLHIMEQFGVQVINHD-YQEFV 249
Query: 310 IQGGQKYK 317
I GQ Y
Sbjct: 250 IPAGQSYV 257
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway,
EPSP synthase, structural genomics; HET: S3P; 1.15A
{Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A*
2o0x_A* 2o0z_A* 2o15_A 2bjb_A
Length = 450
Score = 293 bits (752), Expect = 4e-97
Identities = 72/236 (30%), Positives = 109/236 (46%), Gaps = 21/236 (8%)
Query: 84 PIREISGTVTLPGSKSLSNRILLLAALS----EGTTVVDNLLSSEDIHHMLDALKKLGLN 139
+ TVT+PGSKS +NR L+LAAL+ G + + L S D MLDAL+ LGL
Sbjct: 9 APTPVRATVTVPGSKSQTNRALVLAALAAAQGRGASTISGALRSRDTELMLDALQTLGLR 68
Query: 140 VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDG 199
V+ V G P + G AGT +R + DG
Sbjct: 69 VDGV--GSELTVSGRIEPGP-------GARVDCGLAGTVLRFVPPLAALGSVP--VTFDG 117
Query: 200 VPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTA 259
+ R RPI L+ L++LG VD P R+ G G L GG V + SSQ+++
Sbjct: 118 DQQARGRPIAPLLDALRELGVAVDG----TGLPFRVRGNGSLAGGTVAIDASASSQFVSG 173
Query: 260 LLMAAPLALGNVEIEII-DKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ 314
LL++A + ++ L S P++ MT ++ + GV ++ S +R+ ++ G
Sbjct: 174 LLLSAASFTDGLTVQHTGSSLPSAPHIAMTAAMLRQAGVDIDDST-PNRWQVRPGP 228
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural
genomics, protein structure initiative; 2.80A {Bacillus
halodurans}
Length = 455
Score = 129 bits (327), Expect = 2e-34
Identities = 63/243 (25%), Positives = 113/243 (46%), Gaps = 17/243 (6%)
Query: 75 SKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALK 134
++ V+ + + GT+ +PG KS+S+R ++ AL++GTT V+ L D + +
Sbjct: 2 VMENKTVIPHAKGLKGTIKVPGDKSISHRAVMFGALAKGTTTVEGFLPGADCLSTISCFQ 61
Query: 135 KLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLS 194
KLG+++E+ +R V+G G L +GN+GT R + + +
Sbjct: 62 KLGVSIEQAE--ERVTVKGKGWDGLREPSDI----LDVGNSGTTTRLILGIL--STLPFH 113
Query: 195 YILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSS 254
++ G + +RP+ + LK +GA +D N P+ I G G L G S+
Sbjct: 114 SVIIGDESIGKRPMKRVTEPLKSMGAQIDGRDHGNLTPLSIRG-GQLKGIDFHSP-VASA 171
Query: 255 QYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ 314
Q +A+L+A A G + + + + + T +++E FGV +E I+GGQ
Sbjct: 172 QMKSAILLAGLRAEG--KTSVTEPAKTRDH---TERMLEAFGVNIEKDG--LTVSIEGGQ 224
Query: 315 KYK 317
Sbjct: 225 MLT 227
Score = 30.6 bits (70), Expect = 0.69
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 9/46 (19%)
Query: 104 ILLLAALSEGTTVVDNLLSSE------D-IHHMLDALKKLGLNVEE 142
I +LA + G TV+ + E + I ++ L KLG ++
Sbjct: 323 IAVLATQASGRTVIKDA--EELKVKETNRIDTVVSELTKLGASIHA 366
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii}
PDB: 3roi_A* 4egr_A* 3tr1_A
Length = 441
Score = 114 bits (289), Expect = 3e-29
Identities = 66/207 (31%), Positives = 106/207 (51%), Gaps = 11/207 (5%)
Query: 75 SKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALK 134
S A + P + +SG + +PG KS+S+R +LLAA++EG T VD L D M+ AL+
Sbjct: 1 SNAMDYQTIPSQGLSGEICVPGDKSISHRAVLLAAIAEGQTQVDGFLMGADNLAMVSALQ 60
Query: 135 KLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLS 194
++G +++ +VEG G A + L GN+GTA+R L+ + AG +
Sbjct: 61 QMGASIQVIEDENILVVEGVGMTGLQAPPEA----LDCGNSGTAIRLLSGLL--AGQPFN 114
Query: 195 YILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSS 254
+L G ++ RP+ ++ L +GA +D N PP++I G L G +L S+
Sbjct: 115 TVLTGDSSLQRRPMKRIIDPLTLMGAKID--STGNVPPLKIYGNPRLTGIHYQLP-MASA 171
Query: 255 QYLTALLMAAPLALGNVEIEIIDKLIS 281
Q + LL+A A G + I + S
Sbjct: 172 QVKSCLLLAGLYARG--KTCITEPAPS 196
Score = 30.2 bits (69), Expect = 0.82
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 9/46 (19%)
Query: 104 ILLLAALSEGTTVVDNLLSSE------D-IHHMLDALKKLGLNVEE 142
+L+ AA+++G TV+ + +E D I M+D L+KLG+ E
Sbjct: 323 LLIAAAVAQGKTVLRDA--AELRVKETDRIAAMVDGLQKLGIAAES 366
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway,
EPSP synthase, glyphosate, PEP, transferase; HET: GPJ
S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2
PDB: 1rf5_A 1rf4_A*
Length = 427
Score = 114 bits (287), Expect = 6e-29
Identities = 64/234 (27%), Positives = 115/234 (49%), Gaps = 16/234 (6%)
Query: 84 PIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEED 143
IR + G + +PG KS+S+R ++ +L+EG T V ++L ED+ + + LG+ +E+
Sbjct: 6 NIRHLHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDK 65
Query: 144 FAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRM 203
V+G G A Q L +GN+GT++R ++ + AG + + G +
Sbjct: 66 D--GVITVQGVGMAGLKAPQNA----LNMGNSGTSIRLISGVL--AGADFEVEMFGDDSL 117
Query: 204 RERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMA 263
+RP+ + LK++G + + PP+R+ G L +L S+Q +AL+ A
Sbjct: 118 SKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKGTKNLRPIHYELP-IASAQVKSALMFA 176
Query: 264 APLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYK 317
A A G E II+K + + E ++++FG + + +QG QK
Sbjct: 177 ALQAKG--ESVIIEKEYTRNHTE---DMLQQFGGHLSVDG--KKITVQGPQKLT 223
Score = 30.2 bits (69), Expect = 0.80
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 104 ILLLAALSEGTTVVDNL--LS---SEDIHHMLDALKKLGLNVEE 142
I LLA ++G TV+ + L ++ I + DAL +G ++
Sbjct: 317 IALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITP 360
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta
barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A*
2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
Length = 445
Score = 112 bits (283), Expect = 2e-28
Identities = 56/241 (23%), Positives = 105/241 (43%), Gaps = 18/241 (7%)
Query: 80 IVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLN 139
+ +SGTV +PG KS+S+R + L+ G T + LL ED+ + A++ +G
Sbjct: 5 ATARKSSGLSGTVRIPGDKSISHRSFMFGGLASGETRITGLLEGEDVINTGKAMQAMGAR 64
Query: 140 VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDG 199
+ ++ I++G G LA + L GNA T R V + G
Sbjct: 65 IRKE--GDTWIIDGVGNGGLLAPEAP----LDFGNAATGCRLTMGLV--GVYDFDSTFIG 116
Query: 200 VPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTA 259
+ +RP+G ++ L+++G V G + PV + G ++ S+Q +A
Sbjct: 117 DASLTKRPMGRVLNPLREMGVQVKSEDG-DRLPVTLRGPKTPTPITYRVP-MASAQVKSA 174
Query: 260 LLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVE---HSDSWDRFFIQGGQKY 316
+L+A G +I+ +++ + E K+++ FG + +D ++G K
Sbjct: 175 VLLAGLNTPG--ITTVIEPIMTRDHTE---KMLQGFGANLTVETDADGVRTIRLEGRGKL 229
Query: 317 K 317
Sbjct: 230 T 230
Score = 32.9 bits (76), Expect = 0.12
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 17/79 (21%)
Query: 104 ILLLAALSEGTTVVDNLLSSE------D-IHHMLDALKKLGLNVEE---DFAMKRAIVEG 153
+ + AA +EG TV++ L E D + + + LK G++ +E +V G
Sbjct: 326 LAVAAAFAEGATVMNGL--EELRVKESDRLSAVANGLKLNGVDCDEGETSL-----VVRG 378
Query: 154 CGGLFPLAKQQTGEIELFL 172
L + L
Sbjct: 379 RPDGKGLGNASGAAVATHL 397
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.8 bits (110), Expect = 6e-06
Identities = 44/243 (18%), Positives = 77/243 (31%), Gaps = 66/243 (27%)
Query: 117 VDNLLSSEDIHHMLDALKKLGLNVEE--DFAMKRAIVEGCGGLF-PLAKQQTGEIELFLG 173
D + + D + D K + L+ EE M + V G LF L +Q ++ F+
Sbjct: 26 EDAFVDNFDCKDVQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 174 NAGTAMRP----LTAAVTA-----AGGNLSYI-----LDGVPRM-------RERPIGDLV 212
+R L + + + YI L ++ R +P L
Sbjct: 85 ---EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 213 TGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAP---LALG 269
L +L V I+G G GK ++ + Y M L L
Sbjct: 142 QALLEL---------RPAKNVLIDGVLGS--GKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 270 NVE-----IEIIDKLISVPYVEMTLKLMERFGVFVEHSDS----------WDRFFIQGGQ 314
N +E++ KL ++ R +HS + R ++ +
Sbjct: 191 NCNSPETVLEMLQKL----LYQIDPNWTSR----SDHSSNIKLRIHSIQAELRRLLK-SK 241
Query: 315 KYK 317
Y+
Sbjct: 242 PYE 244
Score = 37.9 bits (87), Expect = 0.005
Identities = 51/323 (15%), Positives = 88/323 (27%), Gaps = 79/323 (24%)
Query: 29 VSAISFRSQSRGCSSSWGLRYNDRLGNNNTVRTVRASASVGTAEKQSKASEIVLQPIREI 88
+S I + + + DRL N+N V +V + K + L +R
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY---NVSRLQPYLKLRQ-ALLELRPA 150
Query: 89 SGTVTL---PGS-KSLSNRILLLAALSEGTTV-----------VDNLLSSEDIHHMLDAL 133
V + GS K+ + L + N S E + ML L
Sbjct: 151 KN-VLIDGVLGSGKT----WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 134 -----KKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGE--------------IELFLGN 174
+ +K I L L K + E F +
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 175 AGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGL-----KQLGADVDCILGTN 229
+ L +T ++ L + L K L +
Sbjct: 266 C----KIL---LTTRFKQVTDFLSAA-TTTHISLDHHSMTLTPDEVKSLLLKY-----LD 312
Query: 230 CPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTL 289
C P LP + + + S + + N + DKL ++ +E +L
Sbjct: 313 CRP------QDLPREVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCDKLTTI--IESSL 363
Query: 290 ---------KLMERFGVFVEHSD 303
K+ +R VF +
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAH 386
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase,
fosfomyc binding, transferase; 2.50A {Streptomyces
tendae}
Length = 479
Score = 44.5 bits (106), Expect = 2e-05
Identities = 31/229 (13%), Positives = 69/229 (30%), Gaps = 64/229 (27%)
Query: 86 REISGTVTLPGSKSLSNRIL-LLAA--LSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEE 142
+SG V G K + ++ +AA + ++N + + + + G +
Sbjct: 22 NRLSGAVRTSGFK---HSLVTTVAAAATASAPVRIENCPDIVETAVLGEIFRAAGAHAHY 78
Query: 143 DFAMKRAIVEGCGGL-----FPLAKQQTGEIELFLGNAGTAMRPL-----TAAVTAAGG- 191
D A + V+ L + G + L L A ++A+GG
Sbjct: 79 DGADETFTVDASAWDRAELPADLVGRIHGSL-YLLP-------ALVSRNGVARLSASGGC 130
Query: 192 NLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILGTNCPPVRING-----KGGLPGGK 245
+ G R RP + + + + G + +G L
Sbjct: 131 PI-----G-EGPRGRPD-EHLLDVMGRFGVTTR---------LTADGSVDLTAQRLTPCT 174
Query: 246 VKLSGKLSSQYLTA----------LLMAAPLALG-----NV--EIEIID 277
+ + ++ L + L+ + G + + ++ D
Sbjct: 175 IDMLDYTRNKALMSGPCYSGAVKTALLMGAVTHGTTTLQHPYLKPDVTD 223
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 0.001
Identities = 48/291 (16%), Positives = 88/291 (30%), Gaps = 86/291 (29%)
Query: 64 ASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSS 123
+ ++ + +E+V + + +S V P +++L L L+E + L
Sbjct: 44 PTEGFAADDEPTTPAELVGKFLGYVSSLVE-PSKVGQFDQVLNLC-LTE---FENCYLEG 98
Query: 124 EDIHHMLDALKKLGLNVEEDFAMKRAIVE------GCGG----------LFPLAKQQTGE 167
DIH KL + + +++ LF G
Sbjct: 99 NDIH---ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV--GEGN 153
Query: 168 IELFL--GNAGTAMRPLTAAVTAAG-GNLSYILDGVPRMRE-----RP-IGDLVTG---- 214
+L G G GN D +R+ +GDL+
Sbjct: 154 AQLVAIFG----------------GQGN---TDDYFEELRDLYQTYHVLVGDLIKFSAET 194
Query: 215 LKQLGA---DVDCILGTNCPPVR-INGKGGLPGGKVKLSGKLSSQYLTALLMAAPL---- 266
L +L D + + + + P YL ++ ++ PL
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTP----------DKDYLLSIPISCPLIGVI 244
Query: 267 ALGNVEIEIIDKLISVPYVEMTLKLMERFG--------VFVEHSDSWDRFF 309
L + + KL+ E+ L G V + +DSW+ FF
Sbjct: 245 QLAH--YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF 293
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase;
inside-OUT alpha/beta barrel; 1.55A {Enterobacter
cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A*
3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A
1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A*
1uae_A* 3kqj_A* 3kr6_A* ...
Length = 419
Score = 39.0 bits (92), Expect = 0.001
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 86 REISGTVTLPGSKSLSNRIL-LLAA--LSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEE 142
+ G VT+ G+K N L +L A L+E + N+ +DI + L +LG VE
Sbjct: 10 TRLQGEVTISGAK---NAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVER 66
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and
degradation of murein sacculus and peptidog infectious
diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A*
Length = 454
Score = 38.3 bits (90), Expect = 0.002
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 7/62 (11%)
Query: 86 REISGTVTLPGSKSLSNRIL-LLAA---LSEGTTVVDNLLSSEDIHHMLDALKKLGLNVE 141
++++G+V + G+K N +L ++AA S+GT+V+ N+ + D+ + + LK L +V
Sbjct: 34 KQLNGSVKMEGAK---NAVLPVIAATLLASKGTSVLKNVPNLSDVFTINEVLKYLNADVS 90
Query: 142 ED 143
Sbjct: 91 FV 92
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan,
structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex
aeolicus} PDB: 3swg_A*
Length = 425
Score = 38.2 bits (90), Expect = 0.003
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 86 REISGTVTLPGSKSLSNRIL-LLAA--LSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEE 142
+ ++G V + G+K N L ++ A L+E + N+ D+ + L L++LG +E
Sbjct: 19 KPLTGKVKISGAK---NAALPIMFATILTEEPCTITNVPDLLDVRNTLLLLRELGAELEF 75
Query: 143 D 143
Sbjct: 76 L 76
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex,
hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8
c.45.1.3 PDB: 1zvr_A*
Length = 528
Score = 34.8 bits (79), Expect = 0.036
Identities = 29/126 (23%), Positives = 44/126 (34%), Gaps = 21/126 (16%)
Query: 26 PKSVS------AISFRSQSRGCSSSWGLRYNDRLGNNNTVRTVRASASVGTAEKQSKASE 79
P ++ SFRS+ R SW + T + VG + K+SK E
Sbjct: 178 PANIPDEELKRVASFRSRGRIPVLSW------IHPESQATITRCSQPMVGVSGKRSKEDE 231
Query: 80 IVLQPIREISGTVTLPGSKSLSNRILLLA--ALSEGTTVVDNL-------LSSEDIHHML 130
LQ I + + + +A A G D L +IH M
Sbjct: 232 KYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFLDIHNIHVMR 291
Query: 131 DALKKL 136
++L+KL
Sbjct: 292 ESLRKL 297
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex,
hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3
PDB: 1m7r_A
Length = 657
Score = 33.0 bits (74), Expect = 0.14
Identities = 29/126 (23%), Positives = 44/126 (34%), Gaps = 21/126 (16%)
Query: 26 PKSVS------AISFRSQSRGCSSSWGLRYNDRLGNNNTVRTVRASASVGTAEKQSKASE 79
P ++ SFRS+ R SW + T + VG + K+SK E
Sbjct: 250 PANIPDEELKRVASFRSRGRIPVLSW------IHPESQATITRCSQPMVGVSGKRSKEDE 303
Query: 80 IVLQPIREISGTVTLPGSKSLSNRILLLA--ALSEGTTVVDNL-------LSSEDIHHML 130
LQ I + + + +A A G D L +IH M
Sbjct: 304 KYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFLDIHNIHVMR 363
Query: 131 DALKKL 136
++L+KL
Sbjct: 364 ESLRKL 369
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.28
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 12 QNTRVFTNQTKLQKPKSVSAISFRSQ 37
Q + KL S A++ ++
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKAT 45
>2j0p_A HEMS, hemin transport protein HEMS; conformational changes, HAEM,
iron, trans ION transport, proteobacteria, iron
transport; HET: HEM 12P; 1.7A {Yersinia enterocolitica}
SCOP: e.62.1.1 PDB: 2j0r_A*
Length = 345
Score = 31.1 bits (70), Expect = 0.46
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 122 SSEDIHHMLDALKKLGLN-------VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGN 174
+ D+H LK+ L V D A + L +A+Q+ EI +F+GN
Sbjct: 191 AMTDVHEFFQLLKRNNLTRQQAFRAVGNDLA-YQVDNSSLTQLLNIAQQEQNEIMIFVGN 249
Query: 175 AG 176
G
Sbjct: 250 RG 251
>2hq2_A Putative heme/hemoglobin transport protein; heme oxygenase,
structural repeat; HET: HEM; 1.45A {Escherichia coli}
SCOP: e.62.1.1 PDB: 1u9t_A
Length = 354
Score = 30.7 bits (69), Expect = 0.58
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Query: 122 SSEDIHHMLDALKKLGLN-------VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGN 174
+ D+H LK+ L V +D A + + A+Q EI +F+GN
Sbjct: 200 AMTDVHQFFTLLKRHNLTRQQAFNLVADDLA-CKVSNSALAQILESAQQDGNEIMVFVGN 258
Query: 175 AG 176
G
Sbjct: 259 RG 260
>1js8_A Hemocyanin; glycoprotein, mollusc, oxygen-transport, thioether
bond, OXY storage-transport complex; HET: NDG NAG BMA
MAN; 2.30A {Octopus dofleini} SCOP: a.86.1.1 b.112.1.1
Length = 394
Score = 29.5 bits (65), Expect = 1.4
Identities = 26/134 (19%), Positives = 43/134 (32%), Gaps = 13/134 (9%)
Query: 33 SFRSQSRGCSSSWGLRYN-DRLGNNN-TVRTVRASASVGTAEKQSKASEIVLQPIREISG 90
S L Y+ D L + T+ + E + A +L+ I + S
Sbjct: 249 KAHSTGATSFDYHKLGYDYDNLNFHGMTIPELEEHLKEIQHEDRVFAG-FLLRTIGQ-SA 306
Query: 91 TVTLP-----GSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFA 145
V G + +L E D L + + +LK L L+ +DF
Sbjct: 307 DVNFDVCTKDGECTFGGTFCILGGEHEMFWAFDRLFKYD----ITTSLKHLRLDAHDDFD 362
Query: 146 MKRAIVEGCGGLFP 159
+K I G +
Sbjct: 363 IKVTIKGIDGHVLS 376
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain,
proteolytic fragment, PSI, structural genomics; 1.42A
{Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A*
3omg_A* 2o4x_A 2e6n_A 2o4x_B
Length = 246
Score = 28.1 bits (62), Expect = 3.2
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 282 VPYVEMTLKLMERFGVFVEHSDSWDRFFIQ 311
+P +E + VFV F++Q
Sbjct: 6 MPVLEEKERSASYKPVFVTEITDDLHFYVQ 35
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 28.4 bits (63), Expect = 3.4
Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 103 RILLLAALSEGTTVVDNL--LSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPL 160
R + ++ + T + L ++ + L+A E++ + +E G P
Sbjct: 273 RDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN-PA 331
Query: 161 A 161
Sbjct: 332 T 332
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET:
DNA; 2.00A {Bacillus subtilis}
Length = 135
Score = 27.6 bits (61), Expect = 3.4
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 8/41 (19%)
Query: 102 NRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEE 142
+ + +GT+ + NLL L K+LGLN E
Sbjct: 2 KKQQFIDMQEQGTSTIPNLL--------LTHYKQLGLNETE 34
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit;
flavoprotein, electron-transfer, FAD, oxidoreductase;
HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1
d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Length = 520
Score = 27.7 bits (62), Expect = 6.1
Identities = 7/87 (8%), Positives = 25/87 (28%), Gaps = 6/87 (6%)
Query: 140 VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLG-----NAGTAMRPLTAAVTAAGGNLS 194
V+ ++ + + + G + +++ G+ + F + ++ GG
Sbjct: 333 VDVNWKIVTDVFKKLGKGRIVTQEEAGDTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSM 392
Query: 195 YILDGVPRMRERPIGDLVTGLKQLGAD 221
+ K++
Sbjct: 393 WFAPVSEARGSE-CKKQAAMAKRVLHK 418
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 27.2 bits (61), Expect = 8.1
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 169 ELFLGNAGTAMRPLTA-AVTAAGGNLS-YILDGVPRMRERPIGDLVTGL 215
E F + ++ A + A +L+ Y+ + + + P LV L
Sbjct: 171 EFFQDASKRLVQSTDAQSALTARNDLAGYLDGLITQFQTEPGAGLVGAL 219
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.381
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,715,024
Number of extensions: 292919
Number of successful extensions: 940
Number of sequences better than 10.0: 1
Number of HSP's gapped: 904
Number of HSP's successfully gapped: 47
Length of query: 317
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 223
Effective length of database: 4,077,219
Effective search space: 909219837
Effective search space used: 909219837
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.6 bits)