RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 021126
(317 letters)
>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
synthase {Escherichia coli [TaxId: 562]}
Length = 427
Score = 144 bits (364), Expect = 1e-40
Identities = 99/238 (41%), Positives = 137/238 (57%), Gaps = 9/238 (3%)
Query: 80 IVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLN 139
+ LQPI + GT+ LPGSKS+SNR LLLAAL+ G TV+ NLL S+D+ HML+AL LG++
Sbjct: 4 LTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVS 63
Query: 140 VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDG 199
R + G GG + L G+ +L G
Sbjct: 64 YTLSADRTRCEIIGNGGPLHAEGALELFLGNAGTAMRPLAAALC------LGSNDIVLTG 117
Query: 200 VPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTA 259
PRM+ERPIG LV L+ GA + + N PP+R+ +GG GG V + G +SSQ+LTA
Sbjct: 118 EPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRL--QGGFTGGNVDVDGSVSSQFLTA 175
Query: 260 LLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYK 317
LLM APLA + I I L+S PY+++TL LM+ FGV +E+ + +F ++GGQ Y+
Sbjct: 176 LLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIEN-QHYQQFVVKGGQSYQ 232
>d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
synthase {Escherichia coli [TaxId: 562]}
Length = 216
Score = 123 bits (308), Expect = 2e-34
Identities = 90/217 (41%), Positives = 123/217 (56%), Gaps = 9/217 (4%)
Query: 101 SNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPL 160
SNR LLLAAL+ G TV+ NLL S+D+ HML+AL LG++ R + G GG
Sbjct: 1 SNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGGPLH- 59
Query: 161 AKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGA 220
E L L A G+ +L G PRM+ERPIG LV L+ GA
Sbjct: 60 -----AEGALELFLGNAGTAMRPLAAALCLGSNDIVLTGEPRMKERPIGHLVDALRLGGA 114
Query: 221 DVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLI 280
+ + N PP+R+ +GG GG V + G +SSQ+LTALLM APLA + I I L+
Sbjct: 115 KITYLEQENYPPLRL--QGGFTGGNVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLV 172
Query: 281 SVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYK 317
S PY+++TL LM+ FGV +E+ + +F ++GGQ Y+
Sbjct: 173 SKPYIDITLNLMKTFGVEIENQH-YQQFVVKGGQSYQ 208
>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
synthase {Streptococcus pneumoniae [TaxId: 1313]}
Length = 427
Score = 126 bits (317), Expect = 6e-34
Identities = 60/234 (25%), Positives = 107/234 (45%), Gaps = 16/234 (6%)
Query: 84 PIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEED 143
IR + G + +PG KS+S+R ++ +L+EG T V ++L ED+ + + LG+ +E+
Sbjct: 6 NIRHLHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDK 65
Query: 144 FAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRM 203
V+G G A Q + GN+GT++R ++ + A + D +
Sbjct: 66 --DGVITVQGVGMAGLKAPQNALNM----GNSGTSIRLISGVLAGADFEVEMFGD--DSL 117
Query: 204 RERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMA 263
+RP+ + LK++G + + PP+R+ G L +L S+Q +AL+ A
Sbjct: 118 SKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKGTKNLRPIHYELP-IASAQVKSALMFA 176
Query: 264 APLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYK 317
A A G I + T ++++FG S + +QG QK
Sbjct: 177 ALQAKGESVIIEKE-----YTRNHTEDMLQQFG--GHLSVDGKKITVQGPQKLT 223
>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl
transferase (EPT, MurA, MurZ) {Enterobacter cloacae
[TaxId: 550]}
Length = 419
Score = 112 bits (280), Expect = 9e-29
Identities = 53/237 (22%), Positives = 89/237 (37%), Gaps = 19/237 (8%)
Query: 80 IVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLN 139
+Q + G VT+ G+K+ + IL A L+E + N+ +DI + L +LG
Sbjct: 4 FRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTK 63
Query: 140 VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDG 199
VE D ++ A +L + + A G L G
Sbjct: 64 VERD---GSVWIDASNVNNFSAPY-----DLVKTMRASIWALGP--LVARFGQGQVSLPG 113
Query: 200 VPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTA 259
+ RP+ + GL++LGA++ G V G L G + K+S
Sbjct: 114 GCAIGARPVDLHIFGLEKLGAEIKLEEGYVKASV----NGRLKGAHIV-MDKVSVGATVT 168
Query: 260 LLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKY 316
++ AA LA G II+ P + T + G + + R I+G ++
Sbjct: 169 IMSAATLAEGT---TIIENAAREPEIVDTANFLVALGAKISGQGTD-RITIEGVERL 221
Score = 27.9 bits (61), Expect = 1.6
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 88 ISGTVTLPGSKSLSN--RI---LLLAAL-SEGTTVVDNLL----SSEDIHHMLDALKKLG 137
G L G++ ++ R L+LA +EGTTVVD + E I D L+ LG
Sbjct: 354 CHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIE---DKLRALG 410
Query: 138 LNVE 141
N+E
Sbjct: 411 ANIE 414
>d2hq2a1 e.62.1.1 (A:1-337) Heme oxygenase ChuS {Escherichia coli
O157:H7 [TaxId: 83334]}
Length = 337
Score = 29.7 bits (67), Expect = 0.39
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 9/75 (12%)
Query: 122 SSEDIHHMLDALKKLGLN-------VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGN 174
+ D+H LK+ L V +D A + + A+Q EI +F+GN
Sbjct: 188 AMTDVHQFFTLLKRHNLTRQQAFNLVADDLA-CKVSNSALAQILESAQQDGNEIMVFVGN 246
Query: 175 AGTAMRPLTAAVTAA 189
G ++ T V
Sbjct: 247 RG-CVQIFTGVVEKV 260
>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium
[TaxId: 90371]}
Length = 376
Score = 27.6 bits (60), Expect = 1.9
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
Query: 82 LQPI-REISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKL 136
Q RE T+TLP ++ S RI L + ++ D ++ AL ++
Sbjct: 327 TQKYYRERFPTLTLPDTEWNSERICSLP--------LFPDMTESDFDRVITALHQI 374
>d1cbka_ d.58.30.1 (A:) 6-hydroxymethyl-7,8-dihydropterin
pyrophosphokinase, HPPK {Haemophilus influenzae [TaxId:
727]}
Length = 160
Score = 26.6 bits (58), Expect = 2.5
Identities = 8/32 (25%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 81 VLQPIREISGTVTLPGSKSLSNRILLLAALSE 112
V+ P+ EI+ + LP S+ ++ L+ ++
Sbjct: 124 VIVPLFEIASDLVLPNSQIITE---LVKQFAD 152
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710
{Thermotoga maritima [TaxId: 2336]}
Length = 139
Score = 26.5 bits (58), Expect = 3.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 121 LSSEDIHHMLDALKKLGLNVEEDF 144
L E +LD LK+L +E +F
Sbjct: 116 LGKEKSSKILDYLKELKGVMERNF 139
>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP)
{Escherichia coli [TaxId: 562]}
Length = 796
Score = 27.3 bits (60), Expect = 3.2
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 113 GTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLA 161
G +NLL+ + D+LK +N+ + + G GGL LA
Sbjct: 71 GRLTGNNLLNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLA 119
>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 824
Score = 26.5 bits (58), Expect = 5.8
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 113 GTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLA 161
G T+ + +++ + +A +LGL++EE ++ G GGL LA
Sbjct: 81 GRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLA 129
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus
faecalis [TaxId: 1351]}
Length = 144
Score = 25.4 bits (55), Expect = 6.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 121 LSSEDIHHMLDALKKLGLNVEEDF 144
LS +I + D L ++ NV ED+
Sbjct: 115 LSEVEISQLADYLVRMRKNVSEDW 138
>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon
(Pyrococcus furiosus) [TaxId: 2261]}
Length = 206
Score = 25.6 bits (55), Expect = 7.6
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 64 ASASVGTAEKQSKASEIVLQPIREISGTVTLP----GSKSLSNRILLLAALSEGTTVVDN 119
+ SV + + A I L+ +R+I +V +P G + N +L +G V+
Sbjct: 124 GAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGINKDNAREVLKTGVDGIAVISA 183
Query: 120 LLSSEDIHHMLDALKKL 136
++ +ED+ + L+K+
Sbjct: 184 VMGAEDVRKATEELRKI 200
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.381
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,109,346
Number of extensions: 50296
Number of successful extensions: 193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 15
Length of query: 317
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,240,546
Effective search space: 287806672
Effective search space used: 287806672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.6 bits)