Query 021128
Match_columns 317
No_of_seqs 245 out of 2123
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 07:49:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021128.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021128hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 5.4E-79 1.2E-83 567.2 30.1 289 22-314 1-316 (371)
2 PRK14288 chaperone protein Dna 100.0 4.3E-69 9.4E-74 512.6 30.9 283 24-314 2-311 (369)
3 PRK14296 chaperone protein Dna 100.0 3.1E-68 6.8E-73 506.9 31.9 286 23-313 2-325 (372)
4 PTZ00037 DnaJ_C chaperone prot 100.0 2.2E-67 4.7E-72 506.0 29.4 280 18-314 21-329 (421)
5 PRK14286 chaperone protein Dna 100.0 1.5E-66 3.2E-71 495.7 31.4 287 23-314 2-323 (372)
6 PRK14298 chaperone protein Dna 100.0 3E-66 6.5E-71 494.1 31.6 286 24-314 4-317 (377)
7 PRK14285 chaperone protein Dna 100.0 5.1E-66 1.1E-70 490.9 31.9 286 24-314 2-319 (365)
8 PRK14282 chaperone protein Dna 100.0 1.7E-65 3.6E-70 488.5 32.2 290 23-314 2-329 (369)
9 PRK14287 chaperone protein Dna 100.0 2.3E-65 5.1E-70 487.3 32.1 286 23-314 2-314 (371)
10 PRK14278 chaperone protein Dna 100.0 3.7E-65 8E-70 487.1 32.4 287 24-314 2-316 (378)
11 PRK14280 chaperone protein Dna 100.0 3.3E-65 7.2E-70 487.3 31.7 288 23-314 2-319 (376)
12 PRK14276 chaperone protein Dna 100.0 5.5E-65 1.2E-69 486.4 31.4 287 23-314 2-322 (380)
13 PRK14277 chaperone protein Dna 100.0 8.2E-65 1.8E-69 486.2 31.2 289 23-314 3-331 (386)
14 PRK14297 chaperone protein Dna 100.0 2.1E-64 4.5E-69 482.7 32.2 289 23-314 2-324 (380)
15 PRK14279 chaperone protein Dna 100.0 2.9E-64 6.4E-69 482.6 30.8 287 23-313 7-344 (392)
16 PRK14284 chaperone protein Dna 100.0 3.1E-64 6.8E-69 482.9 30.8 285 25-314 1-332 (391)
17 PRK14301 chaperone protein Dna 100.0 4.3E-64 9.3E-69 478.9 31.0 286 23-314 2-316 (373)
18 PRK14294 chaperone protein Dna 100.0 5.5E-64 1.2E-68 477.6 30.5 284 23-314 2-316 (366)
19 PRK14295 chaperone protein Dna 100.0 8E-64 1.7E-68 479.2 31.4 284 24-313 8-338 (389)
20 PRK10767 chaperone protein Dna 100.0 9.9E-64 2.1E-68 477.1 31.3 286 23-314 2-314 (371)
21 PRK14281 chaperone protein Dna 100.0 1.8E-63 3.8E-68 478.3 31.4 288 24-314 2-338 (397)
22 PRK14291 chaperone protein Dna 100.0 4.6E-63 1E-67 473.5 31.1 285 24-314 2-328 (382)
23 PRK14290 chaperone protein Dna 100.0 1.7E-62 3.7E-67 467.3 31.9 284 25-314 3-322 (365)
24 TIGR02349 DnaJ_bact chaperone 100.0 5.9E-62 1.3E-66 462.6 30.5 284 26-314 1-319 (354)
25 PRK14300 chaperone protein Dna 100.0 8.7E-62 1.9E-66 463.2 30.6 285 24-314 2-318 (372)
26 PRK14283 chaperone protein Dna 100.0 3.3E-61 7.2E-66 460.3 30.8 286 22-314 2-322 (378)
27 PRK14292 chaperone protein Dna 100.0 2E-60 4.4E-65 454.4 30.8 284 25-314 2-314 (371)
28 PRK14289 chaperone protein Dna 100.0 1.8E-60 3.9E-65 456.7 30.3 289 22-314 2-330 (386)
29 PRK14293 chaperone protein Dna 100.0 7.7E-60 1.7E-64 450.4 29.0 285 24-314 2-319 (374)
30 KOG0712 Molecular chaperone (D 100.0 1.1E-60 2.3E-65 439.0 20.4 277 23-314 2-307 (337)
31 PRK14299 chaperone protein Dna 100.0 4.6E-55 1E-59 404.4 26.1 234 23-313 2-252 (291)
32 PRK10266 curved DNA-binding pr 100.0 4.3E-53 9.3E-58 394.0 27.0 252 24-314 3-261 (306)
33 KOG0713 Molecular chaperone (D 100.0 6.9E-50 1.5E-54 363.2 7.5 292 15-312 6-302 (336)
34 TIGR03835 termin_org_DnaJ term 100.0 5.8E-42 1.3E-46 338.0 25.8 141 135-313 657-797 (871)
35 KOG0715 Molecular chaperone (D 100.0 4E-37 8.6E-42 282.8 12.5 226 24-271 42-288 (288)
36 KOG0714 Molecular chaperone (D 99.9 1.1E-25 2.5E-30 207.2 17.5 255 24-314 2-306 (306)
37 COG2214 CbpA DnaJ-class molecu 99.8 4.6E-20 9.9E-25 162.6 14.7 192 22-261 3-227 (237)
38 KOG0716 Molecular chaperone (D 99.8 2.7E-21 5.8E-26 171.3 4.8 74 24-97 30-103 (279)
39 KOG0691 Molecular chaperone (D 99.8 1E-20 2.3E-25 172.9 5.3 90 24-122 4-93 (296)
40 PTZ00341 Ring-infected erythro 99.8 3.5E-20 7.5E-25 188.0 7.4 76 21-97 569-644 (1136)
41 KOG0718 Molecular chaperone (D 99.8 7.5E-20 1.6E-24 172.1 5.1 74 23-96 7-83 (546)
42 KOG0717 Molecular chaperone (D 99.8 5.4E-19 1.2E-23 166.3 5.5 77 21-97 4-81 (508)
43 PF00226 DnaJ: DnaJ domain; I 99.8 7.8E-19 1.7E-23 126.1 4.6 63 26-88 1-64 (64)
44 KOG0624 dsRNA-activated protei 99.7 2.4E-18 5.2E-23 157.4 7.0 80 20-100 389-471 (504)
45 PHA03102 Small T antigen; Revi 99.7 3.9E-18 8.4E-23 142.0 6.0 85 25-123 5-91 (153)
46 KOG0719 Molecular chaperone (D 99.7 2.7E-18 5.9E-23 148.9 4.7 70 24-93 13-84 (264)
47 KOG0721 Molecular chaperone (D 99.7 1.9E-17 4.1E-22 142.4 7.7 73 22-94 96-168 (230)
48 smart00271 DnaJ DnaJ molecular 99.7 1E-16 2.2E-21 113.4 6.9 59 25-83 1-60 (60)
49 cd06257 DnaJ DnaJ domain or J- 99.6 3.2E-16 7E-21 108.8 6.6 55 26-80 1-55 (55)
50 KOG0722 Molecular chaperone (D 99.6 6.6E-16 1.4E-20 135.5 5.3 85 4-89 7-96 (329)
51 KOG0550 Molecular chaperone (D 99.6 1.4E-15 3.1E-20 142.1 5.6 97 16-119 364-461 (486)
52 PRK05014 hscB co-chaperone Hsc 99.5 3.5E-14 7.6E-19 121.5 6.2 65 25-89 1-72 (171)
53 PRK01356 hscB co-chaperone Hsc 99.5 4.4E-14 9.6E-19 120.1 5.8 65 25-89 2-71 (166)
54 PRK00294 hscB co-chaperone Hsc 99.4 1.3E-13 2.8E-18 117.9 6.4 68 22-89 1-75 (173)
55 PRK03578 hscB co-chaperone Hsc 99.4 1.3E-13 2.9E-18 118.2 6.3 67 23-89 4-77 (176)
56 PTZ00100 DnaJ chaperone protei 99.4 3.1E-13 6.6E-18 107.1 5.1 55 21-79 61-115 (116)
57 KOG0720 Molecular chaperone (D 99.4 6.6E-13 1.4E-17 125.6 5.3 68 21-89 231-298 (490)
58 PRK09430 djlA Dna-J like membr 99.3 1.7E-12 3.8E-17 118.7 5.6 58 24-81 199-263 (267)
59 COG5407 SEC63 Preprotein trans 99.3 2.9E-12 6.3E-17 120.7 5.9 73 24-96 97-174 (610)
60 PHA02624 large T antigen; Prov 99.3 3.4E-12 7.3E-17 126.4 6.1 61 24-88 10-72 (647)
61 PF01556 CTDII: DnaJ C termina 99.2 1.5E-11 3.2E-16 92.4 5.7 54 260-315 1-54 (81)
62 PRK14282 chaperone protein Dna 99.0 5.2E-10 1.1E-14 107.2 6.9 86 132-264 273-359 (369)
63 PRK01773 hscB co-chaperone Hsc 99.0 6.8E-10 1.5E-14 95.0 5.9 65 25-89 2-73 (173)
64 TIGR00714 hscB Fe-S protein as 99.0 8.7E-10 1.9E-14 93.1 5.4 53 37-89 3-60 (157)
65 PF01556 CTDII: DnaJ C termina 98.9 4E-09 8.7E-14 79.2 6.5 72 136-254 1-74 (81)
66 KOG1150 Predicted molecular ch 98.9 1.7E-09 3.6E-14 92.3 4.5 66 23-88 51-117 (250)
67 PRK14290 chaperone protein Dna 98.9 2.8E-09 6.1E-14 102.0 6.6 86 132-265 267-353 (365)
68 COG5269 ZUO1 Ribosome-associat 98.8 3.8E-09 8.3E-14 94.0 5.8 74 18-91 36-114 (379)
69 PRK14285 chaperone protein Dna 98.8 4.6E-09 9.9E-14 100.5 6.5 84 132-262 263-347 (365)
70 PRK14294 chaperone protein Dna 98.8 6E-09 1.3E-13 99.8 6.4 86 132-265 261-347 (366)
71 PRK14299 chaperone protein Dna 98.7 1.4E-08 3E-13 94.4 6.1 83 132-262 198-280 (291)
72 PRK14284 chaperone protein Dna 98.7 1.7E-08 3.6E-13 97.6 6.8 85 132-262 275-360 (391)
73 PRK10767 chaperone protein Dna 98.7 1.8E-08 4E-13 96.7 6.3 86 132-265 259-345 (371)
74 PRK14300 chaperone protein Dna 98.7 5.7E-08 1.2E-12 93.3 9.4 77 132-255 262-339 (372)
75 PRK14298 chaperone protein Dna 98.7 2.1E-08 4.5E-13 96.4 6.2 86 132-265 262-348 (377)
76 TIGR02349 DnaJ_bact chaperone 98.7 3.8E-08 8.3E-13 93.9 6.6 82 132-261 264-346 (354)
77 PRK14279 chaperone protein Dna 98.7 1E-07 2.3E-12 92.0 9.5 75 132-254 290-364 (392)
78 PRK14295 chaperone protein Dna 98.6 9.6E-08 2.1E-12 92.2 8.9 75 132-253 283-357 (389)
79 PRK14301 chaperone protein Dna 98.6 4.8E-08 1E-12 93.8 6.5 82 132-261 261-343 (373)
80 PRK14287 chaperone protein Dna 98.6 4.3E-08 9.3E-13 94.1 6.1 83 132-262 259-342 (371)
81 PRK14288 chaperone protein Dna 98.6 1.6E-07 3.4E-12 90.1 9.2 80 132-258 255-335 (369)
82 PRK14291 chaperone protein Dna 98.6 1.4E-07 3.1E-12 90.8 9.0 74 132-252 272-346 (382)
83 PRK10266 curved DNA-binding pr 98.6 2.3E-07 5E-12 86.8 8.9 75 132-255 206-280 (306)
84 PRK14293 chaperone protein Dna 98.6 8E-08 1.7E-12 92.3 5.7 86 132-265 264-351 (374)
85 PRK14276 chaperone protein Dna 98.5 3.8E-07 8.3E-12 87.8 9.1 75 132-254 267-342 (380)
86 PRK14286 chaperone protein Dna 98.5 2E-07 4.4E-12 89.5 6.5 80 132-258 267-347 (372)
87 PRK14292 chaperone protein Dna 98.5 5.3E-07 1.2E-11 86.6 8.4 80 132-259 259-339 (371)
88 PRK14278 chaperone protein Dna 98.5 6.9E-07 1.5E-11 86.0 9.1 76 132-254 260-336 (378)
89 PRK14281 chaperone protein Dna 98.5 6E-07 1.3E-11 86.9 8.7 74 132-253 283-357 (397)
90 PRK14280 chaperone protein Dna 98.4 9E-07 2E-11 85.1 9.5 75 132-254 264-339 (376)
91 KOG0568 Molecular chaperone (D 98.4 1.7E-07 3.7E-12 81.9 3.9 76 4-80 21-102 (342)
92 PRK14297 chaperone protein Dna 98.4 8.4E-07 1.8E-11 85.5 8.6 75 132-254 269-344 (380)
93 PRK14289 chaperone protein Dna 98.4 1.5E-06 3.2E-11 83.9 8.7 73 132-252 275-348 (386)
94 PRK14283 chaperone protein Dna 98.3 2E-06 4.3E-11 82.8 9.1 74 132-253 267-341 (378)
95 PRK14277 chaperone protein Dna 98.3 2.1E-06 4.6E-11 82.9 8.9 74 132-253 276-350 (386)
96 PTZ00037 DnaJ_C chaperone prot 98.3 2.1E-06 4.5E-11 83.6 8.4 73 132-251 271-347 (421)
97 COG0484 DnaJ DnaJ-class molecu 98.3 2.8E-06 6.2E-11 80.3 8.9 78 132-257 261-339 (371)
98 PRK14296 chaperone protein Dna 98.3 2.6E-06 5.7E-11 81.8 8.5 73 134-254 273-347 (372)
99 KOG1789 Endocytosis protein RM 98.3 7.2E-07 1.6E-11 92.0 4.5 57 20-79 1276-1336(2235)
100 KOG0723 Molecular chaperone (D 98.2 1.6E-06 3.4E-11 66.9 4.7 55 24-82 55-109 (112)
101 TIGR03835 termin_org_DnaJ term 98.2 4.1E-06 8.8E-11 85.0 8.4 71 25-96 2-72 (871)
102 TIGR02642 phage_xxxx uncharact 97.2 0.00042 9E-09 59.9 4.0 47 170-228 103-149 (186)
103 KOG3192 Mitochondrial J-type c 97.1 0.0004 8.7E-09 57.5 2.9 68 21-88 4-78 (168)
104 COG1076 DjlA DnaJ-domain-conta 96.6 0.0026 5.6E-08 54.7 4.5 55 24-78 112-173 (174)
105 KOG0712 Molecular chaperone (D 96.1 0.015 3.2E-07 54.7 6.6 46 207-252 277-324 (337)
106 COG1076 DjlA DnaJ-domain-conta 95.4 0.0064 1.4E-07 52.2 1.3 64 26-89 2-72 (174)
107 PF00684 DnaJ_CXXCXGXG: DnaJ c 95.4 0.023 5.1E-07 40.6 4.0 36 170-206 19-54 (66)
108 KOG0431 Auxilin-like protein a 94.3 0.075 1.6E-06 52.4 5.4 51 29-79 392-449 (453)
109 PF03656 Pam16: Pam16; InterP 93.4 0.17 3.6E-06 41.1 5.1 53 26-82 59-111 (127)
110 PLN03165 chaperone protein dna 91.6 0.49 1.1E-05 37.5 5.5 38 162-203 43-85 (111)
111 PF11833 DUF3353: Protein of u 87.9 1 2.3E-05 39.3 5.1 41 34-82 1-41 (194)
112 PF13446 RPT: A repeated domai 84.3 2.4 5.2E-05 29.6 4.6 27 25-51 5-31 (62)
113 KOG0724 Zuotin and related mol 83.7 1.1 2.4E-05 42.4 3.5 54 36-89 3-60 (335)
114 PF14687 DUF4460: Domain of un 69.0 11 0.00025 29.8 4.9 47 35-81 4-54 (112)
115 COG5552 Uncharacterized conser 63.3 33 0.0007 25.0 5.8 36 24-59 2-37 (88)
116 COG1107 Archaea-specific RecJ- 57.4 5.3 0.00011 40.4 1.2 11 195-205 55-65 (715)
117 PF07709 SRR: Seven Residue Re 56.7 6.3 0.00014 19.1 0.9 13 67-79 2-14 (14)
118 COG1107 Archaea-specific RecJ- 55.6 27 0.00059 35.5 5.8 33 171-203 73-105 (715)
119 PF12725 DUF3810: Protein of u 49.2 54 0.0012 30.9 6.6 61 23-83 80-151 (318)
120 PF10041 DUF2277: Uncharacteri 48.4 87 0.0019 23.0 6.0 57 24-80 2-61 (78)
121 KOG2813 Predicted molecular ch 43.6 18 0.0004 33.9 2.4 20 193-212 256-275 (406)
122 PF12434 Malate_DH: Malate deh 41.4 38 0.00081 19.7 2.6 17 39-55 10-26 (28)
123 PF02736 Myosin_N: Myosin N-te 41.1 35 0.00076 21.8 2.8 37 254-293 5-41 (42)
124 CHL00185 ycf59 magnesium-proto 40.3 73 0.0016 30.1 5.8 60 20-79 245-305 (351)
125 PF07739 TipAS: TipAS antibiot 36.9 50 0.0011 25.5 3.7 52 32-92 51-104 (118)
126 smart00276 GLECT Galectin. Gal 36.0 56 0.0012 26.1 4.0 40 212-251 2-48 (128)
127 PF04017 DUF366: Domain of unk 32.9 18 0.0004 31.0 0.6 11 254-264 102-112 (183)
128 KOG0315 G-protein beta subunit 32.6 30 0.00064 31.6 1.9 31 263-293 18-49 (311)
129 PF03833 PolC_DP2: DNA polymer 32.4 15 0.00032 38.9 0.0 60 145-204 638-703 (900)
130 COG1974 LexA SOS-response tran 28.9 1.1E+02 0.0024 26.8 4.8 46 215-264 123-171 (201)
131 PRK04023 DNA polymerase II lar 28.7 36 0.00078 36.9 2.0 60 144-203 609-673 (1121)
132 cd01047 ACSF Aerobic Cyclase S 28.7 1.6E+02 0.0034 27.6 5.9 59 20-78 229-288 (323)
133 PF03206 NifW: Nitrogen fixati 28.6 1.5E+02 0.0033 23.1 5.1 33 23-55 13-50 (105)
134 TIGR02029 AcsF magnesium-proto 28.4 1.1E+02 0.0025 28.7 5.0 60 20-79 239-299 (337)
135 KOG3442 Uncharacterized conser 28.2 96 0.0021 25.1 3.9 33 28-60 62-94 (132)
136 PF07092 DUF1356: Protein of u 27.8 22 0.00048 32.0 0.3 15 194-208 39-53 (238)
137 PLN02508 magnesium-protoporphy 27.7 1.6E+02 0.0034 28.0 5.8 59 20-78 245-304 (357)
138 PF04246 RseC_MucC: Positive r 27.4 87 0.0019 25.2 3.7 24 207-230 40-63 (135)
139 PRK13654 magnesium-protoporphy 27.3 1.5E+02 0.0032 28.2 5.5 60 20-79 249-309 (355)
140 COG2088 SpoVG Uncharacterized 26.8 53 0.0011 24.8 2.1 35 282-317 24-58 (95)
141 COG5216 Uncharacterized conser 25.6 59 0.0013 22.6 2.0 14 141-154 31-44 (67)
142 PRK00349 uvrA excinuclease ABC 25.6 57 0.0012 35.5 2.9 37 170-211 742-779 (943)
143 cd00084 HMG-box High Mobility 25.2 84 0.0018 21.1 2.9 42 43-89 12-53 (66)
144 TIGR00630 uvra excinuclease AB 24.7 41 0.00089 36.5 1.7 35 170-208 740-774 (924)
145 PRK14714 DNA polymerase II lar 23.5 74 0.0016 35.5 3.2 25 144-168 643-675 (1337)
146 COG0089 RplW Ribosomal protein 23.1 61 0.0013 24.9 1.9 20 30-49 25-44 (94)
147 KOG0724 Zuotin and related mol 22.6 40 0.00086 31.7 1.0 59 28-90 28-86 (335)
148 PF09285 Elong-fact-P_C: Elong 22.0 89 0.0019 21.5 2.3 20 211-230 30-49 (56)
149 TIGR03829 YokU_near_AblA uncha 21.9 97 0.0021 23.5 2.7 24 195-218 1-24 (89)
150 PF14706 Tnp_DNA_bind: Transpo 21.8 1.1E+02 0.0024 21.2 2.8 41 40-82 15-57 (58)
151 KOG0714 Molecular chaperone (D 21.8 16 0.00035 32.8 -1.8 60 21-93 94-153 (306)
152 cd01388 SOX-TCF_HMG-box SOX-TC 20.8 1.2E+02 0.0025 21.5 2.9 41 44-89 14-54 (72)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-79 Score=567.24 Aligned_cols=289 Identities=35% Similarity=0.620 Sum_probs=254.4
Q ss_pred cCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCC
Q 021128 22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAG 101 (317)
Q Consensus 22 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~ 101 (317)
++.+|||+||||+++||.+|||||||+||++||||+|+.+++|+++|++|+|||||||||+||++||+||++++++++.+
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~g 80 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFG 80 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcC
Confidence 46799999999999999999999999999999999999888899999999999999999999999999999998743322
Q ss_pred CCCCCCcccChhhhhhhccCCCCC--CcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc---------
Q 021128 102 GGRGGGMGVNIQDIFSSFFGGGPM--EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK--------- 169 (317)
Q Consensus 102 ~~~~~~~~~~~~d~F~~~fg~~~~--~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~--------- 169 (317)
+++.++|+.++.|||++|||++.. .+.++++++.|+.+.|+|||+||+.|+++++.+++. .|..|.|+
T Consensus 81 g~g~~~fgg~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~ 160 (371)
T COG0484 81 GFGFGGFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPK 160 (371)
T ss_pred CCCcCCCCCCHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCC
Confidence 222233433789999999975532 334456789999999999999999999999999986 68889875
Q ss_pred --cccCccceEEEEEecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCCCC
Q 021128 170 --RRCNCRNEVYHKQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKI 235 (317)
Q Consensus 170 --~~C~g~G~~~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~ 235 (317)
++|+|+|++.+.+.. |++++.+ +++|++|+|.+++.+.++++|+||+|+.+|++|+++|+|++++
T Consensus 161 tC~tC~G~G~v~~~~~~-g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~ 239 (371)
T COG0484 161 TCPTCNGSGQVRTVQRT-GFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGP 239 (371)
T ss_pred cCCCCCCcCeEEEEEee-eEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCC
Confidence 568899987665543 5554433 7899999999999999999999999999999999999999998
Q ss_pred C-CCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCccccc
Q 021128 236 D-GEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEVL 314 (317)
Q Consensus 236 ~-~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~~~ 314 (317)
+ +++|||||+|.|++|+.|+|+|+|||++++||+.+|+||++++||||||+ ++|.++.-++. |+.++|+|||+|.+
T Consensus 240 ~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~-~~l~ip~Gtq~--G~~~rl~gkG~p~~ 316 (371)
T COG0484 240 NGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGR-VKLKIPAGTQT--GEVFRLRGKGMPKL 316 (371)
T ss_pred CCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCC-EEEecCCCCcc--CcEEEEcCCCcccc
Confidence 4 56799999999999999999999999999999999999999999999999 99999988886 89999999999975
No 2
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.3e-69 Score=512.59 Aligned_cols=283 Identities=28% Similarity=0.525 Sum_probs=240.5
Q ss_pred CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCCC
Q 021128 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 103 (317)
Q Consensus 24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~ 103 (317)
+.|||+||||+++||.+|||+|||+||++||||+|+.+++|+++|++|++||+||+||++|+.||+||++++.....
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~--- 78 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGA--- 78 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCC---
Confidence 58999999999999999999999999999999999876779999999999999999999999999999987653211
Q ss_pred CCCCcc---cChhhhhhhccCCCCC-CcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc---------
Q 021128 104 RGGGMG---VNIQDIFSSFFGGGPM-EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK--------- 169 (317)
Q Consensus 104 ~~~~~~---~~~~d~F~~~fg~~~~-~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~--------- 169 (317)
++++|. .++.++|++|||++.. ....+..++.|+.+.|.|||+|+|+|+++++.+.|. .|..|.|+
T Consensus 79 ~~~~~~~~f~~~~~~F~~~fg~g~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~ 158 (369)
T PRK14288 79 SQSDFSDFFEDLGSFFEDAFGFGARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALET 158 (369)
T ss_pred CccccccchhhHHHHHHhhcCCCCcccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcC
Confidence 111121 1345678888874321 111234578999999999999999999999999886 67778774
Q ss_pred -cccCccceEEEEEecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCCCCC
Q 021128 170 -RRCNCRNEVYHKQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKID 236 (317)
Q Consensus 170 -~~C~g~G~~~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~ 236 (317)
+.|+|.|.+...+ |++++.+ ..+|+.|+|.+++.+.++++|.||||+++|++|+|+|+|++.++
T Consensus 159 C~~C~G~G~~~~~~---g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G~~~~~ 235 (369)
T PRK14288 159 CKQCNGQGQVFMRQ---GFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYEK 235 (369)
T ss_pred CCCCCCCcEEEEEe---ceEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCccCCCC
Confidence 4577788665443 4443222 66799999999999999999999999999999999999999888
Q ss_pred CCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCccccc
Q 021128 237 GEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEVL 314 (317)
Q Consensus 237 ~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~~~ 314 (317)
+.+|||+|+|++++|+.|+|+|+|||++++|||+|||+|++++|+||||+.+.|+++.++++ |+.++|+|+|+|..
T Consensus 236 ~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~--g~~~~i~g~G~p~~ 311 (369)
T PRK14288 236 GKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARD--RQTFAFRNEGVKHP 311 (369)
T ss_pred CCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCC--CcEEEEcCCCCCCC
Confidence 88999999999999999999999999999999999999999999999999899999988876 69999999999964
No 3
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.1e-68 Score=506.86 Aligned_cols=286 Identities=28% Similarity=0.467 Sum_probs=240.3
Q ss_pred CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCC
Q 021128 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG 102 (317)
Q Consensus 23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~ 102 (317)
+.+|||++|||+++||.+|||+|||+||++||||+|++ +.|+++|++|++||+|||||+||+.||+||+++++...+.+
T Consensus 2 ~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~-~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~ 80 (372)
T PRK14296 2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-PDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFS 80 (372)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-chHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcC
Confidence 35899999999999999999999999999999999975 45899999999999999999999999999998765321100
Q ss_pred CCCCCc----------c-cChhhhhhhccCCCCCCcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc-
Q 021128 103 GRGGGM----------G-VNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK- 169 (317)
Q Consensus 103 ~~~~~~----------~-~~~~d~F~~~fg~~~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~- 169 (317)
++.++| + .++.|+|++|||++.. ..++..++.|+.+.+.|||+|+|+|+++++.+.+. .|..|.|+
T Consensus 81 ~~~~~~~~~~~~~~~~g~~~f~d~f~~~fggg~~-~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G 159 (372)
T PRK14296 81 SNFGDFEDLFSNMGSSGFSSFTNIFSDFFGSNKS-DYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSG 159 (372)
T ss_pred cCCCccccccccccccccccchhhhhhhcCCCcc-CCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCc
Confidence 000010 0 1456899999985421 12234578999999999999999999999999875 67788874
Q ss_pred ----------cccCccceEEEE-EecCceeEEE------------eeeccccCCCceEEeeCEEEEEEecCCCCCCCEEE
Q 021128 170 ----------RRCNCRNEVYHK-QIGPGMFQQM------------TEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVV 226 (317)
Q Consensus 170 ----------~~C~g~G~~~~~-~~~~g~~~~~------------~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~ 226 (317)
+.|+|+|.+... +++++++++. ..+.|+.|+|.+++.+.++++|.||+|+++|++|+
T Consensus 160 ~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~ 239 (372)
T PRK14296 160 AESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKGIRPNQQIK 239 (372)
T ss_pred cCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEECCCCCCCCEEE
Confidence 457888876543 5666444321 26789999999999999999999999999999999
Q ss_pred EcccCCCCC-CCCCccEEEEEEEeCCCCeeEe-CCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEE
Q 021128 227 FYEDGEPKI-DGEPGDLKFRIRTAPHDRFRRE-GNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSF 304 (317)
Q Consensus 227 ~~g~G~~~~-~~~~GDL~v~i~v~~h~~F~R~-G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~ 304 (317)
|+|+|++.+ ++.+|||+|+|+++||+.|+|+ |+|||++++|||+|||+|++++|+||||+ +.|.++.++++ |+.+
T Consensus 240 ~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~-~~v~ip~~t~~--g~~~ 316 (372)
T PRK14296 240 LSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGD-IKYKLPKSINS--NELI 316 (372)
T ss_pred EeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCC-EEEEECCccCC--CcEE
Confidence 999999874 6778999999999999999996 89999999999999999999999999998 99999988876 7999
Q ss_pred EecCCcccc
Q 021128 305 AMTKKRIEV 313 (317)
Q Consensus 305 ~~~~k~~~~ 313 (317)
+|+|||+|.
T Consensus 317 ri~GkGmP~ 325 (372)
T PRK14296 317 IINNKGLYK 325 (372)
T ss_pred EEcCCCCCc
Confidence 999999994
No 4
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=2.2e-67 Score=506.03 Aligned_cols=280 Identities=33% Similarity=0.599 Sum_probs=241.1
Q ss_pred hhhccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCcccccc
Q 021128 18 ALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQ 97 (317)
Q Consensus 18 ~~~~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~ 97 (317)
++..+..+|||++|||+++||.+|||+|||+||++||||+|++ .++|++|++||+|||||.+|+.||+||++++..
T Consensus 21 ~~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~ 96 (421)
T PTZ00037 21 RKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEG 96 (421)
T ss_pred ccccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcchhccc
Confidence 3445557899999999999999999999999999999999863 379999999999999999999999999987642
Q ss_pred ccCCCCCCCCcccChhhhhhhccCCCCCCcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc-------
Q 021128 98 HAAGGGRGGGMGVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK------- 169 (317)
Q Consensus 98 ~~~~~~~~~~~~~~~~d~F~~~fg~~~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~------- 169 (317)
. + ++ .++.|+|+.|||++... ....++.|+.+.|.|||+|+|+|+++++.+.+. +|..|.|+
T Consensus 97 ~----~--~~--~d~~d~f~~~Fggg~~~--~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~ 166 (421)
T PTZ00037 97 G----E--QP--ADASDLFDLIFGGGRKP--GGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAF 166 (421)
T ss_pred C----C--CC--cchhhhHHHhhcccccc--ccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCC
Confidence 1 0 11 25789999999864211 234578999999999999999999999999886 57778774
Q ss_pred ---cccCccceEEE-EEecCceeEEEe---------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEccc
Q 021128 170 ---RRCNCRNEVYH-KQIGPGMFQQMT---------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYED 230 (317)
Q Consensus 170 ---~~C~g~G~~~~-~~~~~g~~~~~~---------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~ 230 (317)
+.|+|.|.++. +++++ ++++++ .++|+.|+|.+++.+.++++|.||||+.+|++|+|+|+
T Consensus 167 ~~C~~C~G~G~~~~~~~~g~-~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~ 245 (421)
T PTZ00037 167 VDCKLCNGQGIRVQIRQMGS-MIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGE 245 (421)
T ss_pred ccCCCCCCCCeEEEEEeecc-eeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecc
Confidence 45788886543 45565 443332 37899999999999999999999999999999999999
Q ss_pred CCCCCCCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeC--CcccCCCCcEEEecC
Q 021128 231 GEPKIDGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTK--VSMNMCFGTSFAMTK 308 (317)
Q Consensus 231 G~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~--~v~~~~~~~~~~~~~ 308 (317)
|++.+++.+|||+|+|+++||+.|+|+|+|||++++|||+|||+|+++.|+||||+.|.|+++ .|+++ |+.++|+|
T Consensus 246 Gd~~~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~p--g~~~~I~g 323 (421)
T PTZ00037 246 ADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKP--GDIKVINN 323 (421)
T ss_pred cCCCCCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCC--CcEEEeCC
Confidence 999999999999999999999999999999999999999999999999999999998999987 56776 69999999
Q ss_pred Cccccc
Q 021128 309 KRIEVL 314 (317)
Q Consensus 309 k~~~~~ 314 (317)
+|+|..
T Consensus 324 eGmP~~ 329 (421)
T PTZ00037 324 EGMPTY 329 (421)
T ss_pred CCcccC
Confidence 999964
No 5
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.5e-66 Score=495.72 Aligned_cols=287 Identities=31% Similarity=0.576 Sum_probs=241.4
Q ss_pred CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCC
Q 021128 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG 102 (317)
Q Consensus 23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~ 102 (317)
..+|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||.+|+.||+||++++..+.+++
T Consensus 2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~ 81 (372)
T PRK14286 2 SERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGF 81 (372)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCC
Confidence 45899999999999999999999999999999999987777999999999999999999999999999998875321111
Q ss_pred CCC--CCcc---cChhhhhhhccCCCC-C----CcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc--
Q 021128 103 GRG--GGMG---VNIQDIFSSFFGGGP-M----EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK-- 169 (317)
Q Consensus 103 ~~~--~~~~---~~~~d~F~~~fg~~~-~----~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~-- 169 (317)
+.+ ++|+ .++.|+|++|||++. . .......++.|+++.|.|||||+|+|+++++.+.+. .|..|.|+
T Consensus 82 ~~~~~~~~~~~~~~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~ 161 (372)
T PRK14286 82 GQGAYTDFSDIFGDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGA 161 (372)
T ss_pred CCCCcccccccccchhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCc
Confidence 111 1111 256799999998532 1 111234578999999999999999999999999886 57788774
Q ss_pred ---------cccCccceEEEEEecCceeEEE------------eeeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEc
Q 021128 170 ---------RRCNCRNEVYHKQIGPGMFQQM------------TEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFY 228 (317)
Q Consensus 170 ---------~~C~g~G~~~~~~~~~g~~~~~------------~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~ 228 (317)
+.|+|.|.+...+ |++++. ..++|+.|+|.+++.+.++++|.||+|+++|++|+|+
T Consensus 162 ~~~~~~~~C~~C~G~G~v~~~~---G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~ 238 (372)
T PRK14286 162 SKGSSPTTCPDCGGSGQIRRTQ---GFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVS 238 (372)
T ss_pred CCCCCCccCCCCcCeEEEEEEe---ceEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCCCCCCCEEEEC
Confidence 3466777654443 444322 2678999999999999999999999999999999999
Q ss_pred ccCCCCCC-CCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEec
Q 021128 229 EDGEPKID-GEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMT 307 (317)
Q Consensus 229 g~G~~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~ 307 (317)
|+|++.++ +.+|||||+|+++||+.|+|+|+||++++.|+|.+||+|+++.|+||||+.|.|+++..+++ |+.++|+
T Consensus 239 g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~--g~~~ri~ 316 (372)
T PRK14286 239 GEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTES--GQVFRLK 316 (372)
T ss_pred CccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCC--CcEEEEC
Confidence 99999875 45699999999999999999999999999999999999999999999999999999988876 6999999
Q ss_pred CCccccc
Q 021128 308 KKRIEVL 314 (317)
Q Consensus 308 ~k~~~~~ 314 (317)
|+|+|..
T Consensus 317 G~G~P~~ 323 (372)
T PRK14286 317 GHGMPYL 323 (372)
T ss_pred CCCCCCC
Confidence 9999964
No 6
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3e-66 Score=494.07 Aligned_cols=286 Identities=30% Similarity=0.504 Sum_probs=240.9
Q ss_pred CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCCC
Q 021128 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 103 (317)
Q Consensus 24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~ 103 (317)
.+|||+||||+++||.+|||+|||+||++||||+|++ +.|+++|++|++||++|+||.+|+.||+||+++++.+.++.+
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~ 82 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE-PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAED 82 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC-hhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCccc
Confidence 5799999999999999999999999999999999975 458899999999999999999999999999987753211100
Q ss_pred --CCCCcccChhhhhhhccCCCCCCcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc-----------
Q 021128 104 --RGGGMGVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK----------- 169 (317)
Q Consensus 104 --~~~~~~~~~~d~F~~~fg~~~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~----------- 169 (317)
++++| .++.|+|++|||++.......+.++.|+++.|.|||+|+|+|+++++.+.+. .|..|.|+
T Consensus 83 ~~~~~~~-~~~~d~f~~~Fgg~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C 161 (377)
T PRK14298 83 IFRGADF-GGFGDIFEMFFGGGGRRGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRC 161 (377)
T ss_pred ccccCCc-CcchhhhHhhhcCCCccCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcC
Confidence 01122 1467899999985421112234578999999999999999999999999886 57778774
Q ss_pred cccCccceEEEEEecCceeEEEe-------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCCCC-
Q 021128 170 RRCNCRNEVYHKQIGPGMFQQMT-------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKI- 235 (317)
Q Consensus 170 ~~C~g~G~~~~~~~~~g~~~~~~-------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~- 235 (317)
+.|+|.|.+...+..++++.+++ .++|+.|+|.+++.+.++++|.||||+++|++|+|+|+|++.+
T Consensus 162 ~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~ 241 (377)
T PRK14298 162 PTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLSGEGEAGSP 241 (377)
T ss_pred CCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEecccCCCCC
Confidence 45788888766544454333332 6789999999999999999999999999999999999999964
Q ss_pred CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCccccc
Q 021128 236 DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEVL 314 (317)
Q Consensus 236 ~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~~~ 314 (317)
++.+|||+|+|+++||+.|+|+|+||+++++|||.|||+|++++|+||||+ +.|.++..+++ |+.++|+|+|+|..
T Consensus 242 ~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-i~v~ip~g~~~--g~~lri~g~G~p~~ 317 (377)
T PRK14298 242 GAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGK-VKMNIPPGTQT--HSVFRLKDKGMPRL 317 (377)
T ss_pred CCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCC-EEEEeCCCccc--CCEEEECCCCCCCC
Confidence 567899999999999999999999999999999999999999999999998 88888877775 69999999999964
No 7
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.1e-66 Score=490.86 Aligned_cols=286 Identities=32% Similarity=0.591 Sum_probs=241.6
Q ss_pred CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCCC
Q 021128 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 103 (317)
Q Consensus 24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~ 103 (317)
.+|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||+||+++++.+.+.++
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~ 81 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEG 81 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccc
Confidence 47999999999999999999999999999999999877778999999999999999999999999999987753211101
Q ss_pred --CC-CCcc---cChhhhhhhccCCCCCC-cccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc------
Q 021128 104 --RG-GGMG---VNIQDIFSSFFGGGPME-EDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK------ 169 (317)
Q Consensus 104 --~~-~~~~---~~~~d~F~~~fg~~~~~-~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~------ 169 (317)
++ ++|+ .++.|+|++|||++... ......++.|+.++|.|||||+|+|+++++.+.|. .|..|.|+
T Consensus 82 ~~~g~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 161 (365)
T PRK14285 82 FSGGFSGFSDIFEDFGDIFDSFFTGNRGQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGT 161 (365)
T ss_pred cCCCccccccccccHHHHHHHhhcCCcCCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCC
Confidence 11 1111 24679999999853211 11224578999999999999999999999999886 57778775
Q ss_pred -----cccCccceEEEEEecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCC
Q 021128 170 -----RRCNCRNEVYHKQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGE 232 (317)
Q Consensus 170 -----~~C~g~G~~~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~ 232 (317)
+.|+|+|.+.. ++|++++.. .++|+.|+|.+++.+.++++|.||||+++|++|+|+|+|+
T Consensus 162 ~~~~C~~C~G~G~~~~---~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~ 238 (365)
T PRK14285 162 SPSICNMCNGSGRVMQ---GGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGKGS 238 (365)
T ss_pred CCccCCCccCceeEEe---cCceeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEeeccc
Confidence 34667776543 456653322 6789999999999999999999999999999999999999
Q ss_pred CCCC-CCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCcc
Q 021128 233 PKID-GEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRI 311 (317)
Q Consensus 233 ~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~ 311 (317)
+.++ +.+|||+|+|++++|+.|+|+|+|||++++|||.|||+|++++|+||||+.|.|.++..+++ |+.++|+|+|+
T Consensus 239 ~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~--g~~irl~GkG~ 316 (365)
T PRK14285 239 VNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTEN--DEQIIIKNEGM 316 (365)
T ss_pred cCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCC--CcEEEECCCCc
Confidence 9886 45799999999999999999999999999999999999999999999999999999988775 69999999999
Q ss_pred ccc
Q 021128 312 EVL 314 (317)
Q Consensus 312 ~~~ 314 (317)
|.+
T Consensus 317 p~~ 319 (365)
T PRK14285 317 PIL 319 (365)
T ss_pred cCC
Confidence 864
No 8
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-65 Score=488.53 Aligned_cols=290 Identities=31% Similarity=0.527 Sum_probs=243.3
Q ss_pred CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHhHhhhCCccccccccccCccccccccCC
Q 021128 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAG 101 (317)
Q Consensus 23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~ 101 (317)
+.+|||++|||+++||.+|||+|||+||++||||+|+.+ .+|+++|++|++||++|+||++|+.||+||++++.....+
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~ 81 (369)
T PRK14282 2 EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQE 81 (369)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccccccccc
Confidence 468999999999999999999999999999999999864 5689999999999999999999999999998876532111
Q ss_pred CCCCCCc-c---cCh-----hhhhhhccCCCCC--CcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc
Q 021128 102 GGRGGGM-G---VNI-----QDIFSSFFGGGPM--EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK 169 (317)
Q Consensus 102 ~~~~~~~-~---~~~-----~d~F~~~fg~~~~--~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~ 169 (317)
.+++++| . .++ .|+|++|||++.. .......++.|+.+.+.|||+|+|+|+++++.+.|. .|..|.|+
T Consensus 82 ~~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~ 161 (369)
T PRK14282 82 TESGGGFFEDIFKDFENIFNRDIFDIFFGERRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGT 161 (369)
T ss_pred CCCCCcccccccccccccccchhhhHhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCcc
Confidence 0111111 1 011 3789999975311 111234578999999999999999999999999886 57788774
Q ss_pred -----------cccCccceEEE-EEecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEE
Q 021128 170 -----------RRCNCRNEVYH-KQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEV 225 (317)
Q Consensus 170 -----------~~C~g~G~~~~-~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i 225 (317)
+.|+|.|.+.. +++++|++++.+ .+.|+.|+|.+++.+.++++|.||||+.+|++|
T Consensus 162 G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i 241 (369)
T PRK14282 162 GVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPAGVEDGTVL 241 (369)
T ss_pred CCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeCCCCCCCCEE
Confidence 45788887654 467888876544 567889999999999999999999999999999
Q ss_pred EEcccCCCCC-CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEE
Q 021128 226 VFYEDGEPKI-DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSF 304 (317)
Q Consensus 226 ~~~g~G~~~~-~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~ 304 (317)
+|+|+|++++ ++.+|||+|+|+++||+.|+|+|+||+++++|||.||++|++++|+||||+.+.|.++..+++ |+.+
T Consensus 242 ~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g~~~--g~~i 319 (369)
T PRK14282 242 RITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPGTQP--ETVF 319 (369)
T ss_pred EEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCCcCC--CCEE
Confidence 9999999876 456799999999999999999999999999999999999999999999999899999887765 7999
Q ss_pred EecCCccccc
Q 021128 305 AMTKKRIEVL 314 (317)
Q Consensus 305 ~~~~k~~~~~ 314 (317)
+|+|+|+|..
T Consensus 320 ri~GkG~p~~ 329 (369)
T PRK14282 320 RLKGKGLPNM 329 (369)
T ss_pred EECCCCCCCC
Confidence 9999999864
No 9
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.3e-65 Score=487.29 Aligned_cols=286 Identities=29% Similarity=0.536 Sum_probs=242.0
Q ss_pred CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCC
Q 021128 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG 102 (317)
Q Consensus 23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~ 102 (317)
+..|||++|||+++||.+|||+|||+||++||||+|++ ++|+++|++|++||++|+||.+|+.||+||++++..+.++
T Consensus 2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~- 79 (371)
T PRK14287 2 SKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGG- 79 (371)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCC-
Confidence 35799999999999999999999999999999999975 4588999999999999999999999999999877532111
Q ss_pred CCCCCcccChhhhhhhccCCCCC-CcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc-----------
Q 021128 103 GRGGGMGVNIQDIFSSFFGGGPM-EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK----------- 169 (317)
Q Consensus 103 ~~~~~~~~~~~d~F~~~fg~~~~-~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~----------- 169 (317)
++.++|+ ++.|+|++|||++.. .......++.|+.+.+.|||+|+|+|+++++.+.+. .|..|.|+
T Consensus 80 ~~~~~f~-~~~d~f~~~fgg~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C 158 (371)
T PRK14287 80 GGAGDFG-GFSDIFDMFFGGGGGRRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETC 158 (371)
T ss_pred CCCcccc-chHHHHHhhhccccCCCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCccc
Confidence 1112232 467999999985321 111234578999999999999999999999999886 57778764
Q ss_pred cccCccceEEE-EEecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCCCC-
Q 021128 170 RRCNCRNEVYH-KQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKI- 235 (317)
Q Consensus 170 ~~C~g~G~~~~-~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~- 235 (317)
+.|+|+|.+.. .++++|++++.. .++|..|.|.+++.+.++++|.||+|+++|++|+|+|+|++.+
T Consensus 159 ~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~ 238 (371)
T PRK14287 159 SHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEAGVN 238 (371)
T ss_pred CCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcCCCC
Confidence 45788887654 467778876533 5568888888888888999999999999999999999999975
Q ss_pred CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCccccc
Q 021128 236 DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEVL 314 (317)
Q Consensus 236 ~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~~~ 314 (317)
++.+|||+|+|+++||+.|+|+|+||++++.|||.+|++|++++|+||||+ +.|.++..+++ |+.++|+|+|+|..
T Consensus 239 ~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g~~~--g~~~ri~g~G~p~~ 314 (371)
T PRK14287 239 GGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGK-VKLKIPAGTQT--GTSFRLRGKGVPNV 314 (371)
T ss_pred CCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCC-EEEEECCCccC--CcEEEEcCCCccCC
Confidence 457899999999999999999999999999999999999999999999998 88888877775 69999999999964
No 10
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.7e-65 Score=487.05 Aligned_cols=287 Identities=35% Similarity=0.566 Sum_probs=240.5
Q ss_pred CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCCC
Q 021128 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 103 (317)
Q Consensus 24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~ 103 (317)
.+|||+||||+++||.+|||+|||+||++||||+|++ ++|+++|++|++||+||+||.+|+.||+||++....+..+++
T Consensus 2 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g 80 (378)
T PRK14278 2 ARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-EEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGG 80 (378)
T ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc-HHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCC
Confidence 3799999999999999999999999999999999984 568999999999999999999999999999863321110101
Q ss_pred CCCCcccChhhhhhhccCCCCCC-c-ccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc-----------
Q 021128 104 RGGGMGVNIQDIFSSFFGGGPME-E-DEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK----------- 169 (317)
Q Consensus 104 ~~~~~~~~~~d~F~~~fg~~~~~-~-~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~----------- 169 (317)
.+++|+ ++.|+|++|||++... . .....++.|+++.|.|||+|+|+|+++++.+.+. .|..|.|+
T Consensus 81 ~~~~f~-~~~d~f~~ffgg~g~~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C 159 (378)
T PRK14278 81 FGGGFG-GLGDVFEAFFGGGAASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTC 159 (378)
T ss_pred CCcCcC-chhHHHHHHhCCCCCCCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceec
Confidence 111222 4678999999853211 1 1134578999999999999999999999999886 57778774
Q ss_pred cccCccceEEEE-EecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCCCCC
Q 021128 170 RRCNCRNEVYHK-QIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKID 236 (317)
Q Consensus 170 ~~C~g~G~~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~ 236 (317)
+.|+|+|.+... +.++|++++.+ .++|+.|+|.+++.+.++++|.||||+++|++|+|+|+|++.++
T Consensus 160 ~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~ 239 (378)
T PRK14278 160 DTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEVGPG 239 (378)
T ss_pred CCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCCCCC
Confidence 357788876554 45566665432 67899999999999999999999999999999999999999885
Q ss_pred -CCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCccccc
Q 021128 237 -GEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEVL 314 (317)
Q Consensus 237 -~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~~~ 314 (317)
+.+|||+|+|+++||+.|+|+|+||+++++|||.+|++|++++|+|||+..+.|.++..+++ |+.++|+|+|+|..
T Consensus 240 ~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~--g~~lrl~g~G~p~~ 316 (378)
T PRK14278 240 GGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQP--GSVITLRGRGMPHL 316 (378)
T ss_pred CCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCC--CcEEEECCCCCCCC
Confidence 46799999999999999999999999999999999999999999999888899999988775 79999999999964
No 11
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.3e-65 Score=487.35 Aligned_cols=288 Identities=34% Similarity=0.601 Sum_probs=242.1
Q ss_pred CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCC
Q 021128 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG 102 (317)
Q Consensus 23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~ 102 (317)
+.+|||++|||+++||.+|||+|||+||++||||+|++. .|+++|++|++||++|+||.+|+.||+||++++..+.+++
T Consensus 2 ~~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~-~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~ 80 (376)
T PRK14280 2 AKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEE-GADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGG 80 (376)
T ss_pred CCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-cHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCC
Confidence 357999999999999999999999999999999999854 4889999999999999999999999999998876432111
Q ss_pred C-CCCCc--ccChhhhhhhccCCCCC-CcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc--------
Q 021128 103 G-RGGGM--GVNIQDIFSSFFGGGPM-EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK-------- 169 (317)
Q Consensus 103 ~-~~~~~--~~~~~d~F~~~fg~~~~-~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~-------- 169 (317)
+ ++++| +++++|+|++|||++.. .......++.|+.+.|.|||||+|+|+++++.+.+. .|..|.|+
T Consensus 81 ~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~ 160 (376)
T PRK14280 81 GFGGGDFGGGFGFEDIFSSFFGGGGRRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSK 160 (376)
T ss_pred CCCCCCccccccchhhHHHHhCCccccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCC
Confidence 1 00111 12577999999975321 111234578999999999999999999999999886 57778774
Q ss_pred ---cccCccceEEEE-EecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCC
Q 021128 170 ---RRCNCRNEVYHK-QIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEP 233 (317)
Q Consensus 170 ---~~C~g~G~~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~ 233 (317)
+.|+|.|.+... +.++|++++.. .++|+.|+|.+++.+.++++|.||+|+++|++|+|+|+|++
T Consensus 161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~G~G~~ 240 (376)
T PRK14280 161 ETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEGEP 240 (376)
T ss_pred ccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEcccccC
Confidence 457778876544 56677776432 56799999999999999999999999999999999999998
Q ss_pred CCC-CCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCccc
Q 021128 234 KID-GEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIE 312 (317)
Q Consensus 234 ~~~-~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~ 312 (317)
.++ +.+|||+|+|+++||+.|+|+|+|||+++.|||.|||+|+++.|+||||+ +.|.++..+++ |+.++|+|+|+|
T Consensus 241 ~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~ip~g~~~--g~~~~i~g~G~p 317 (376)
T PRK14280 241 GVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGK-VKLKIPAGTQT--GTQFRLKGKGVP 317 (376)
T ss_pred CCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCce-EEEEECCCCCC--CcEEEEcCCCCC
Confidence 764 56799999999999999999999999999999999999999999999997 88999887775 699999999999
Q ss_pred cc
Q 021128 313 VL 314 (317)
Q Consensus 313 ~~ 314 (317)
..
T Consensus 318 ~~ 319 (376)
T PRK14280 318 NV 319 (376)
T ss_pred CC
Confidence 64
No 12
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.5e-65 Score=486.45 Aligned_cols=287 Identities=31% Similarity=0.581 Sum_probs=243.2
Q ss_pred CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCC-
Q 021128 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAG- 101 (317)
Q Consensus 23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~- 101 (317)
+.+|||+||||+++||.+|||+|||+||++||||+|++ +.|+++|++|++||++|+||.+|+.||+||+++++.+.++
T Consensus 2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~ 80 (380)
T PRK14276 2 NNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGG 80 (380)
T ss_pred CCCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCC
Confidence 35899999999999999999999999999999999985 4588999999999999999999999999999887642111
Q ss_pred C-C-CC----CCcccChhhhhhhccCCCCC-CcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc----
Q 021128 102 G-G-RG----GGMGVNIQDIFSSFFGGGPM-EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK---- 169 (317)
Q Consensus 102 ~-~-~~----~~~~~~~~d~F~~~fg~~~~-~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~---- 169 (317)
. + ++ .++ .++.|+|++|||++.. .......++.|+.+.|.|||||+|+|+++++.+.+. .|..|.|+
T Consensus 81 ~~~~~~~~~~~~~-~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~ 159 (380)
T PRK14276 81 AGGFGGFDGSGGF-GGFEDIFSSFFGGGGARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKP 159 (380)
T ss_pred CCCCCCccccccc-cchhhHHHHHhCccccccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCC
Confidence 0 1 00 112 2567999999985321 112234578999999999999999999999999886 57778774
Q ss_pred -------cccCccceEEE-EEecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcc
Q 021128 170 -------RRCNCRNEVYH-KQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYE 229 (317)
Q Consensus 170 -------~~C~g~G~~~~-~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g 229 (317)
+.|+|+|.+.. .++++|++++.. .++|+.|+|.+++.+.++++|.||+|+++|++|+|+|
T Consensus 160 ~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~G 239 (380)
T PRK14276 160 GTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQG 239 (380)
T ss_pred CCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCCccCCcEEEEec
Confidence 45778887654 467778877543 5679999999999999999999999999999999999
Q ss_pred cCCCCCC-CCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecC
Q 021128 230 DGEPKID-GEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTK 308 (317)
Q Consensus 230 ~G~~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~ 308 (317)
+|++.++ +.+|||+|+|+++||+.|+|+|+||+++++|||.|||+|++++|+||||+ +.|.++..+++ |+.++|+|
T Consensus 240 ~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~-i~v~ip~g~~~--g~~~~i~g 316 (380)
T PRK14276 240 QGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGD-VELKIPAGTQT--GKKFRLRG 316 (380)
T ss_pred cccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCc-EEEEECCCCCC--CCEEEECC
Confidence 9999764 46799999999999999999999999999999999999999999999998 88888877765 79999999
Q ss_pred Cccccc
Q 021128 309 KRIEVL 314 (317)
Q Consensus 309 k~~~~~ 314 (317)
+|+|.+
T Consensus 317 ~G~p~~ 322 (380)
T PRK14276 317 KGAPKL 322 (380)
T ss_pred CCcCCC
Confidence 999974
No 13
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.2e-65 Score=486.16 Aligned_cols=289 Identities=35% Similarity=0.585 Sum_probs=241.4
Q ss_pred CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCC
Q 021128 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG 102 (317)
Q Consensus 23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~ 102 (317)
+.+|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||+||+++++....++
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~ 82 (386)
T PRK14277 3 AKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQ 82 (386)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccccccccc
Confidence 45899999999999999999999999999999999987777899999999999999999999999999998875321111
Q ss_pred C----CC---CCcc---cChhhhhhhccCCC----CCCcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCC
Q 021128 103 G----RG---GGMG---VNIQDIFSSFFGGG----PMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAP 167 (317)
Q Consensus 103 ~----~~---~~~~---~~~~d~F~~~fg~~----~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~ 167 (317)
+ ++ +++. .++.|+|++||++. .........++.|+++.|.|||+|+|+|+++++.+.|. .|..|.
T Consensus 83 ~~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~ 162 (386)
T PRK14277 83 GGFGQGGFGGGGFDFDFGGFGDIFEDIFGDFFGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCK 162 (386)
T ss_pred CCcCCCCccccCccccccchhHHHHHhhcccccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCC
Confidence 0 01 1111 13457788777631 11111224578999999999999999999999999886 566787
Q ss_pred Cc-----------cccCccceEEE-EEecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCCC
Q 021128 168 GK-----------RRCNCRNEVYH-KQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQ 223 (317)
Q Consensus 168 g~-----------~~C~g~G~~~~-~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~ 223 (317)
|+ +.|+|.|.+.. .++++|++++.. .++|+.|+|.+++.+.++++|.||+|+++|+
T Consensus 163 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 242 (386)
T PRK14277 163 GSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPAGIDDGQ 242 (386)
T ss_pred CCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEecCCCccCCc
Confidence 64 45777887654 467788877644 5679999999999999999999999999999
Q ss_pred EEEEcccCCCCC-CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCc
Q 021128 224 EVVFYEDGEPKI-DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGT 302 (317)
Q Consensus 224 ~i~~~g~G~~~~-~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~ 302 (317)
+|+|+|+|++.+ ++.+|||+|+|++++|+.|+|+|+||+++++|||+|||+|+++.|+||||+ +.|.++..+++ |+
T Consensus 243 ~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g~~~--g~ 319 (386)
T PRK14277 243 MITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGK-VKFTIPEGTQT--GT 319 (386)
T ss_pred EEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCC-EEEEECCCCCC--CC
Confidence 999999999865 456799999999999999999999999999999999999999999999998 89999877764 79
Q ss_pred EEEecCCccccc
Q 021128 303 SFAMTKKRIEVL 314 (317)
Q Consensus 303 ~~~~~~k~~~~~ 314 (317)
.++|+|+|+|..
T Consensus 320 ~~ri~g~G~p~~ 331 (386)
T PRK14277 320 KFRLRGKGIPHL 331 (386)
T ss_pred EEEECCCCCCCC
Confidence 999999999964
No 14
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.1e-64 Score=482.74 Aligned_cols=289 Identities=33% Similarity=0.598 Sum_probs=242.4
Q ss_pred CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCC
Q 021128 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG 102 (317)
Q Consensus 23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~ 102 (317)
+..|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||+||+++++.+.+.+
T Consensus 2 ~~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~ 81 (380)
T PRK14297 2 ASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFG 81 (380)
T ss_pred CCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCC
Confidence 45799999999999999999999999999999999987777999999999999999999999999999998875321111
Q ss_pred -CCCCCcc----cChhhhhhhccCCCC-C--CcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc----
Q 021128 103 -GRGGGMG----VNIQDIFSSFFGGGP-M--EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK---- 169 (317)
Q Consensus 103 -~~~~~~~----~~~~d~F~~~fg~~~-~--~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~---- 169 (317)
++.++|. .++.|+|++|||++. . .......++.|+++.|.|||||+|+|+++++.+.+. .|..|.|+
T Consensus 82 ~~~~~~~~~~~~~~~~d~f~~~fgg~~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~ 161 (380)
T PRK14297 82 SGGFGGFDFSDMGGFGDIFDSFFGGGFGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKP 161 (380)
T ss_pred CCCCCCcCcccccchhHHHHHHhccCccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccC
Confidence 0101111 146799999998531 1 111234578999999999999999999999999886 57778764
Q ss_pred -------cccCccceEEE-EEecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcc
Q 021128 170 -------RRCNCRNEVYH-KQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYE 229 (317)
Q Consensus 170 -------~~C~g~G~~~~-~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g 229 (317)
+.|+|.|.+.. ++.++|++++.. .++|..|+|.+++.+.++++|.||||+++|++|+|+|
T Consensus 162 ~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~l~g 241 (380)
T PRK14297 162 GTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRG 241 (380)
T ss_pred CCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEEEEec
Confidence 45778887654 456677665432 5678888888888999999999999999999999999
Q ss_pred cCCCCCC-CCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecC
Q 021128 230 DGEPKID-GEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTK 308 (317)
Q Consensus 230 ~G~~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~ 308 (317)
+|++.+. +.+|||+|+|++++|+.|+|+|+||+++++|||+|||+|++++|+||||+ +.|.++..+++ |+.++|+|
T Consensus 242 ~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-~~v~ip~g~~~--g~~~ri~g 318 (380)
T PRK14297 242 QGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGE-VKYEVPAGTQP--GTVFRLKG 318 (380)
T ss_pred CccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCc-EEEEECCCcCC--CCEEEEcC
Confidence 9998764 56899999999999999999999999999999999999999999999997 89999888775 79999999
Q ss_pred Cccccc
Q 021128 309 KRIEVL 314 (317)
Q Consensus 309 k~~~~~ 314 (317)
+|+|..
T Consensus 319 ~G~p~~ 324 (380)
T PRK14297 319 KGVPRV 324 (380)
T ss_pred CCcCCC
Confidence 999953
No 15
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.9e-64 Score=482.61 Aligned_cols=287 Identities=28% Similarity=0.460 Sum_probs=233.8
Q ss_pred CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccC--
Q 021128 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAA-- 100 (317)
Q Consensus 23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~-- 100 (317)
+.+|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+|||||+||++||+||+++...+..
T Consensus 7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~ 86 (392)
T PRK14279 7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGR 86 (392)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhccccccccc
Confidence 358999999999999999999999999999999999877779999999999999999999999999999753221100
Q ss_pred ---CCCCCCCc-------ccC---------------hhhhhhhccCCCCC-CcccccccCCceEEeecccHHHHhcCcee
Q 021128 101 ---GGGRGGGM-------GVN---------------IQDIFSSFFGGGPM-EEDEKIVKGDDVIVELDATLEDLYMGGSL 154 (317)
Q Consensus 101 ---~~~~~~~~-------~~~---------------~~d~F~~~fg~~~~-~~~~~~~kg~di~~~l~vtlee~~~G~~~ 154 (317)
++++.++| +.+ +.|+|+.|||++.. .......++.|+++.|.|||+|+|+|+++
T Consensus 87 ~~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~ 166 (392)
T PRK14279 87 RFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTM 166 (392)
T ss_pred cccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeEE
Confidence 00000111 011 34667777764321 11223457899999999999999999999
Q ss_pred EEEeeee-eecCCCCc-----------cccCccceEEEEEecCceeE----------EEeeeccccCCCceEEeeCEEEE
Q 021128 155 KVWREKN-VIKPAPGK-----------RRCNCRNEVYHKQIGPGMFQ----------QMTEQVCDQCQNVKYEREGYFVT 212 (317)
Q Consensus 155 ~v~~~r~-v~~~c~g~-----------~~C~g~G~~~~~~~~~g~~~----------~~~~~~C~~C~G~g~~~~~~~~~ 212 (317)
++.+.+. .|..|.|+ +.|+|+|.+...+ ++..++ +...++|+.|+|.+++.+.++++
T Consensus 167 ~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~~~~~ 245 (392)
T PRK14279 167 PLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ-GAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTRTIN 245 (392)
T ss_pred EEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe-cceEEEEecCCCCceeEEeCCcCCCCCCCeEEEEeeeeE
Confidence 9999886 57778775 4577777665543 221111 12267899999999999999999
Q ss_pred EEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEe
Q 021128 213 VDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDIS 291 (317)
Q Consensus 213 V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~ 291 (317)
|.||||+++|++|+|+|+|++.++ +.+|||+|+|+++||+.|+|+|+||+++++|||.+|++|++++|+||||+ +.|.
T Consensus 246 V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~-i~v~ 324 (392)
T PRK14279 246 VRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGP-VGVK 324 (392)
T ss_pred EEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCce-EEEE
Confidence 999999999999999999999875 45799999999999999999999999999999999999999999999998 8899
Q ss_pred eCCcccCCCCcEEEecCCcccc
Q 021128 292 TKVSMNMCFGTSFAMTKKRIEV 313 (317)
Q Consensus 292 ~~~v~~~~~~~~~~~~~k~~~~ 313 (317)
++..+++ |+.++|+|+|+|.
T Consensus 325 Ip~g~~~--g~~iri~g~G~p~ 344 (392)
T PRK14279 325 VPAGTAD--GRILRVRGRGVPK 344 (392)
T ss_pred ECCCCCC--CCEEEECCCCCCC
Confidence 9877765 7999999999995
No 16
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.1e-64 Score=482.88 Aligned_cols=285 Identities=32% Similarity=0.535 Sum_probs=236.5
Q ss_pred CccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCC-CC
Q 021128 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAG-GG 103 (317)
Q Consensus 25 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~-~~ 103 (317)
.|||+||||+++||.+|||+|||+||++||||+|++++.|+++|++|++||++|+|+.+|++||+||++++..+.++ ++
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~ 80 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG 80 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence 48999999999999999999999999999999999877799999999999999999999999999999876432111 00
Q ss_pred CC-CC-----------cc---cChhhhhhhccCCCC---C--CcccccccCCceEEeecccHHHHhcCceeEEEeeee-e
Q 021128 104 RG-GG-----------MG---VNIQDIFSSFFGGGP---M--EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-V 162 (317)
Q Consensus 104 ~~-~~-----------~~---~~~~d~F~~~fg~~~---~--~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v 162 (317)
++ ++ |+ ..+.|+|++|||+.. . .......++.|+.+.|.|||||+|+|+++++.+.+. .
T Consensus 81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~ 160 (391)
T PRK14284 81 AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKS 160 (391)
T ss_pred CCcCcccchhhhccccccccccccccchhhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeecc
Confidence 00 00 11 012578899997421 1 111234578999999999999999999999999875 5
Q ss_pred ecCCCCc-----------cccCccceEEEEEecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCC
Q 021128 163 IKPAPGK-----------RRCNCRNEVYHKQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGM 219 (317)
Q Consensus 163 ~~~c~g~-----------~~C~g~G~~~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~ 219 (317)
|..|.|+ +.|+|.|.+...+ |++++.. .++|+.|+|.+++.+.++++|.||||+
T Consensus 161 C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~---G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~ 237 (391)
T PRK14284 161 CDACSGSGANSSQGIKVCDRCKGSGQVVQSR---GFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAGV 237 (391)
T ss_pred CCCCcccccCCCCCCeecCccCCeeEEEEEe---ceEEEEEECCCCCCCCcccCCcCCCCCCcceecceEEEEEEECCCC
Confidence 7778764 3467777665443 4443221 677999999999999999999999999
Q ss_pred CCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCC-CCeEEEeeCCccc
Q 021128 220 QDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLD-EHLVDISTKVSMN 297 (317)
Q Consensus 220 ~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tld-G~~i~i~~~~v~~ 297 (317)
.+|++|+|+|+|+++++ +.+|||+|+|+++||+.|+|+|+||+++++|||.||++|++++|+||| |+.+.|.++..++
T Consensus 238 ~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g~~ 317 (391)
T PRK14284 238 DSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEGIQ 317 (391)
T ss_pred CCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCccC
Confidence 99999999999999874 678999999999999999999999999999999999999999999999 6789999998887
Q ss_pred CCCCcEEEecCCccccc
Q 021128 298 MCFGTSFAMTKKRIEVL 314 (317)
Q Consensus 298 ~~~~~~~~~~~k~~~~~ 314 (317)
+ |+.++|+|+|+|..
T Consensus 318 ~--g~~~~i~g~G~p~~ 332 (391)
T PRK14284 318 S--GTILKVRGQGFPNV 332 (391)
T ss_pred C--CeEEEECCCCCCCC
Confidence 6 69999999999964
No 17
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.3e-64 Score=478.92 Aligned_cols=286 Identities=32% Similarity=0.557 Sum_probs=238.8
Q ss_pred CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCC
Q 021128 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG 102 (317)
Q Consensus 23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~ 102 (317)
+.+|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||.+|+.||+||+++++.+.+++
T Consensus 2 ~~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~~ 81 (373)
T PRK14301 2 SQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGFG 81 (373)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCCC
Confidence 35899999999999999999999999999999999987777899999999999999999999999999998775321111
Q ss_pred CCCC--CcccChhhhhhhccCCCCC--CcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc--------
Q 021128 103 GRGG--GMGVNIQDIFSSFFGGGPM--EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK-------- 169 (317)
Q Consensus 103 ~~~~--~~~~~~~d~F~~~fg~~~~--~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~-------- 169 (317)
+..+ .+..++.|+|++|||++.. ....+..++.|+.+.|.|||||+|+|+++++.+.+. .|..|.|+
T Consensus 82 g~~~~~~~~~~f~d~f~~~fg~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~ 161 (373)
T PRK14301 82 GFSSAEDIFSHFSDIFGDLFGFSGGGSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSP 161 (373)
T ss_pred CcccccccccchHHHHHHHhhccCcccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCC
Confidence 1000 0011356889998873211 112234578999999999999999999999999886 57778774
Q ss_pred ---cccCccceEEEEEecCceeEEE------------eeeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCCC
Q 021128 170 ---RRCNCRNEVYHKQIGPGMFQQM------------TEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPK 234 (317)
Q Consensus 170 ---~~C~g~G~~~~~~~~~g~~~~~------------~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~ 234 (317)
+.|+|+|.+...+ |++++. ..+.|+.|+|.+++.+.++++|.||+|+++|++|+|+|+|++.
T Consensus 162 ~~C~~C~G~G~v~~~~---G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~ 238 (373)
T PRK14301 162 ETCRHCGGSGQVRQSQ---GFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEPG 238 (373)
T ss_pred cccCCccCeeEEEEEe---eeEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEeccccCC
Confidence 4577777665432 444332 2678999999999999999999999999999999999999987
Q ss_pred C-CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCcccc
Q 021128 235 I-DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEV 313 (317)
Q Consensus 235 ~-~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~~ 313 (317)
+ ++.+|||+|+|++++|+.|+|+|+||+++++|||.+||+|++++|+||||+ +.|.++..+++ |+.++|+|+|+|.
T Consensus 239 ~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-i~v~ip~g~~~--g~~~ri~g~G~p~ 315 (373)
T PRK14301 239 VHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDP-VTLDIPKGTQS--GEVFRLRGKGLPY 315 (373)
T ss_pred CCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCcc-EEEEECCCcCC--CcEEEEcCCCCCC
Confidence 6 466899999999999999999999999999999999999999999999998 99999988875 7999999999996
Q ss_pred c
Q 021128 314 L 314 (317)
Q Consensus 314 ~ 314 (317)
.
T Consensus 316 ~ 316 (373)
T PRK14301 316 L 316 (373)
T ss_pred C
Confidence 4
No 18
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.5e-64 Score=477.63 Aligned_cols=284 Identities=34% Similarity=0.608 Sum_probs=237.8
Q ss_pred CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCC
Q 021128 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG 102 (317)
Q Consensus 23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~ 102 (317)
+.+|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||+||++++.....+
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~- 80 (366)
T PRK14294 2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFS- 80 (366)
T ss_pred CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCC-
Confidence 4689999999999999999999999999999999998777789999999999999999999999999999887532111
Q ss_pred CCCCCcc---cChhhhhhhccC-CCCC--CcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc------
Q 021128 103 GRGGGMG---VNIQDIFSSFFG-GGPM--EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK------ 169 (317)
Q Consensus 103 ~~~~~~~---~~~~d~F~~~fg-~~~~--~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~------ 169 (317)
+ .++|. .++.|+|++||| ++.. .......++.|+++.|.|||||+|+|+++++.+.+. .|..|.|+
T Consensus 81 ~-~~~~~~~~~~~~d~f~~~fg~g~~~~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 159 (366)
T PRK14294 81 G-FSGFDDIFSSFGDIFEDFFGFGGGRRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGT 159 (366)
T ss_pred C-cCccccchhhhhhhHHHhhccCCCcCCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCC
Confidence 1 11221 246689999997 3211 111234578999999999999999999999999886 57778774
Q ss_pred -----cccCccceEEEEEecCceeEEE------------eeeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCC
Q 021128 170 -----RRCNCRNEVYHKQIGPGMFQQM------------TEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGE 232 (317)
Q Consensus 170 -----~~C~g~G~~~~~~~~~g~~~~~------------~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~ 232 (317)
+.|+|.|.+.... |++++. ..+.|+.|+|.+++.+.++++|.||||+++|++|+|+|+|+
T Consensus 160 ~~~~C~~C~G~G~~~~~~---G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~ 236 (366)
T PRK14294 160 SPTTCPQCGGSGQVTQSQ---GFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGE 236 (366)
T ss_pred CcccCCCcCCeEEEEEEe---eeEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCCcEEEEccCcc
Confidence 4567777654332 444322 16789999999999999999999999999999999999999
Q ss_pred CCC-CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCcc
Q 021128 233 PKI-DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRI 311 (317)
Q Consensus 233 ~~~-~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~ 311 (317)
+.+ ++.+|||+|+|+++||+.|+|+|+||++++.|||.+||+|++++|+||||+ +.|.++..+++ |+.++|+|+|+
T Consensus 237 ~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g~~~--g~~iri~G~G~ 313 (366)
T PRK14294 237 AGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGE-RELKIPKGTQP--GDIFRFKGKGI 313 (366)
T ss_pred CCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCc-EEEEECCCcCC--CCEEEECCCCC
Confidence 875 467899999999999999999999999999999999999999999999997 68888877764 79999999999
Q ss_pred ccc
Q 021128 312 EVL 314 (317)
Q Consensus 312 ~~~ 314 (317)
|..
T Consensus 314 p~~ 316 (366)
T PRK14294 314 PSL 316 (366)
T ss_pred CCC
Confidence 864
No 19
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8e-64 Score=479.17 Aligned_cols=284 Identities=32% Similarity=0.565 Sum_probs=236.4
Q ss_pred CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccc----cCcccccccc
Q 021128 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDT----YGEEGLKQHA 99 (317)
Q Consensus 24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~----~G~~~~~~~~ 99 (317)
.+|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||.+|+.||+ ||++++..+.
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~~ 87 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPGP 87 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccCC
Confidence 589999999999999999999999999999999998777799999999999999999999999999 9988775311
Q ss_pred CCC-CCC------------------CCcccChhhhhhhccCCCCCCcccccccCCceEEeecccHHHHhcCceeEEEeee
Q 021128 100 AGG-GRG------------------GGMGVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREK 160 (317)
Q Consensus 100 ~~~-~~~------------------~~~~~~~~d~F~~~fg~~~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r 160 (317)
.++ +++ ++++..+.|+|++|||++. ...+..++.|+++.|.|||||+|+|++++|.+.+
T Consensus 88 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~--~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r 165 (389)
T PRK14295 88 GGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGG--RRTQPRRGADVESEVTLSFTEAIDGATVPLRLTS 165 (389)
T ss_pred CCCCCCCCCcccccccccccccccccccccchhhhhcccccCCC--CCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeec
Confidence 100 000 0111124567777776432 1223457899999999999999999999999988
Q ss_pred e-eecCCCCc-----------cccCccceEEEEEecCceeEE-----------EeeeccccCCCceEEeeCEEEEEEecC
Q 021128 161 N-VIKPAPGK-----------RRCNCRNEVYHKQIGPGMFQQ-----------MTEQVCDQCQNVKYEREGYFVTVDIEK 217 (317)
Q Consensus 161 ~-v~~~c~g~-----------~~C~g~G~~~~~~~~~g~~~~-----------~~~~~C~~C~G~g~~~~~~~~~V~Ip~ 217 (317)
. .|..|.|+ +.|+|+|.+...+ + ++.++ ...++|+.|.|.+++.+.++++|.||+
T Consensus 166 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-g-~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~ 243 (389)
T PRK14295 166 QAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS-G-GFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPA 243 (389)
T ss_pred cccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe-c-ceEEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEeCC
Confidence 6 57778764 3567777665544 2 22221 126789999999999999999999999
Q ss_pred CCCCCCEEEEcccCCCCC-CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcc
Q 021128 218 GMQDGQEVVFYEDGEPKI-DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSM 296 (317)
Q Consensus 218 G~~~G~~i~~~g~G~~~~-~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~ 296 (317)
|+++|++|+|+|+|++.+ ++.+|||+|+|+++||+.|+|+|+||+++++|||.+||+|++++|+||||+.+.|.++..+
T Consensus 244 G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g~ 323 (389)
T PRK14295 244 GVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPGT 323 (389)
T ss_pred CCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCcc
Confidence 999999999999999875 4567999999999999999999999999999999999999999999999999999999887
Q ss_pred cCCCCcEEEecCCcccc
Q 021128 297 NMCFGTSFAMTKKRIEV 313 (317)
Q Consensus 297 ~~~~~~~~~~~~k~~~~ 313 (317)
++ |+.++|+|+|+|.
T Consensus 324 ~~--g~~iri~G~G~p~ 338 (389)
T PRK14295 324 PN--GRVLRVRGKGAVR 338 (389)
T ss_pred CC--CcEEEECCCCcCC
Confidence 75 7999999999985
No 20
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9.9e-64 Score=477.14 Aligned_cols=286 Identities=34% Similarity=0.611 Sum_probs=238.4
Q ss_pred CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCC
Q 021128 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG 102 (317)
Q Consensus 23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~ 102 (317)
+.+|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||+||++++....+++
T Consensus 2 ~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~ 81 (371)
T PRK10767 2 AKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGG 81 (371)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCC
Confidence 46899999999999999999999999999999999987777899999999999999999999999999998775321111
Q ss_pred CCC--CCcccChhhhhhhccCCCCCCcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc----------
Q 021128 103 GRG--GGMGVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK---------- 169 (317)
Q Consensus 103 ~~~--~~~~~~~~d~F~~~fg~~~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~---------- 169 (317)
+.+ .+|+..+.|+|++|||++.........++.|+.+.|.|||||+|+|+++++.+.+. .|..|.|+
T Consensus 82 ~~~~~~~~~~~f~~~f~~~fgg~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~ 161 (371)
T PRK10767 82 GFGGGGGFGDIFGDIFGDIFGGGRGGGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKT 161 (371)
T ss_pred CCCCccccccchhhhhhhhccCCccccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCcc
Confidence 111 12221256788888875321112234578999999999999999999999999886 57778774
Q ss_pred -cccCccceEEEEEecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCCCC-
Q 021128 170 -RRCNCRNEVYHKQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKI- 235 (317)
Q Consensus 170 -~~C~g~G~~~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~- 235 (317)
+.|+|+|.+...+ |++++.. .+.|+.|+|.+++.+.++++|.||||+.+|++|+|+|+|++.+
T Consensus 162 C~~C~G~G~~~~~~---g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~ 238 (371)
T PRK10767 162 CPTCHGAGQVRMQQ---GFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGEAGER 238 (371)
T ss_pred CCCCCCeeEEEEee---ceEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEecCccCCCC
Confidence 4567777655443 4443221 5679999999999999999999999999999999999999864
Q ss_pred CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCccccc
Q 021128 236 DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEVL 314 (317)
Q Consensus 236 ~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~~~ 314 (317)
++.+|||+|+|+++||+.|+|+|+||++++.|||.+||+|++++|+|||| .+.|.++..+++ |+.++|+|+|+|..
T Consensus 239 ~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG-~i~v~ip~g~~~--g~~~~i~g~G~p~~ 314 (371)
T PRK10767 239 GGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDG-RVKLKIPEGTQT--GKLFRLRGKGVKSV 314 (371)
T ss_pred CCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCC-cEEEEeCCCCCC--CCEEEECCCCcCCC
Confidence 46789999999999999999999999999999999999999999999999 489999887775 79999999999964
No 21
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.8e-63 Score=478.26 Aligned_cols=288 Identities=35% Similarity=0.590 Sum_probs=238.9
Q ss_pred CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCC-C
Q 021128 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAG-G 102 (317)
Q Consensus 24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~-~ 102 (317)
.+|||+||||+++||.+|||+|||+||++||||+|+++.+|+++|++|++||++|+||.+|+.||+||++++...... +
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~ 81 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGG 81 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCC
Confidence 479999999999999999999999999999999998777789999999999999999999999999999877532111 1
Q ss_pred CCC-CCcccChhhhh---hhccCCCC---------------CCcc----cccccCCceEEeecccHHHHhcCceeEEEee
Q 021128 103 GRG-GGMGVNIQDIF---SSFFGGGP---------------MEED----EKIVKGDDVIVELDATLEDLYMGGSLKVWRE 159 (317)
Q Consensus 103 ~~~-~~~~~~~~d~F---~~~fg~~~---------------~~~~----~~~~kg~di~~~l~vtlee~~~G~~~~v~~~ 159 (317)
+++ ++.+.++.|+| ++|||++. .... ....++.|+++.|.|||||+|+|+++++.+.
T Consensus 82 ~~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~ 161 (397)
T PRK14281 82 GPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIK 161 (397)
T ss_pred CCCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEE
Confidence 110 00112455555 57887421 0000 1124689999999999999999999999998
Q ss_pred ee-eecCCCCc----------cccCccceEEEE-EecCceeEEEe------------eeccccCCCceEEeeCEEEEEEe
Q 021128 160 KN-VIKPAPGK----------RRCNCRNEVYHK-QIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDI 215 (317)
Q Consensus 160 r~-v~~~c~g~----------~~C~g~G~~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~I 215 (317)
+. .|..|.|+ +.|+|.|.+... +.++|++++.+ .++|+.|+|.+++.+.++++|.|
T Consensus 162 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~I 241 (397)
T PRK14281 162 KQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVTV 241 (397)
T ss_pred eeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEEec
Confidence 86 57678774 457788876543 56667765432 67899999999999999999999
Q ss_pred cCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCC
Q 021128 216 EKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKV 294 (317)
Q Consensus 216 p~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~ 294 (317)
|||+++|++|+|+|+|++.++ +.+|||+|+|+++||+.|+|+|+||+++++|||.|||+|++++|+||||+ +.|.++.
T Consensus 242 p~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~ip~ 320 (397)
T PRK14281 242 PAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGA-VKLTIPA 320 (397)
T ss_pred CCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCcc-EEEEeCC
Confidence 999999999999999999874 57899999999999999999999999999999999999999999999998 8899887
Q ss_pred cccCCCCcEEEecCCccccc
Q 021128 295 SMNMCFGTSFAMTKKRIEVL 314 (317)
Q Consensus 295 v~~~~~~~~~~~~~k~~~~~ 314 (317)
.+++ |+.++|+|+|+|..
T Consensus 321 g~~~--G~~~ri~g~G~P~~ 338 (397)
T PRK14281 321 GTQP--ETMLRIPGKGIGHL 338 (397)
T ss_pred ccCC--CcEEEEcCCCCCCC
Confidence 7765 79999999999964
No 22
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.6e-63 Score=473.49 Aligned_cols=285 Identities=32% Similarity=0.569 Sum_probs=235.1
Q ss_pred CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCCC
Q 021128 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 103 (317)
Q Consensus 24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~ 103 (317)
.+|||++|||+++||.+|||+|||+||++||||+|++ ++|+++|++|++||++||||.+|+.||+||++++.......+
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~ 80 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQ 80 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCccc
Confidence 5899999999999999999999999999999999986 458899999999999999999999999999987653211111
Q ss_pred CCCCc----ccChhhhhhhcc---CCC--CC------Cc---ccccccCCceEEeecccHHHHhcCceeEEEeeee-eec
Q 021128 104 RGGGM----GVNIQDIFSSFF---GGG--PM------EE---DEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIK 164 (317)
Q Consensus 104 ~~~~~----~~~~~d~F~~~f---g~~--~~------~~---~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~ 164 (317)
+..+| ..++.|+|++|| |.+ +. .. .....++.|+.+.|.|||+|+|+|+++++.+.+. .|.
T Consensus 81 ~~~~~~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~ 160 (382)
T PRK14291 81 GQEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCE 160 (382)
T ss_pred cccccccccCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCC
Confidence 11111 125667777773 211 00 00 1123478999999999999999999999999875 577
Q ss_pred CCCCc-----------cccCccceEEEEEecCceeEEE-----------eeeccccCCCceEEeeCEEEEEEecCCCCCC
Q 021128 165 PAPGK-----------RRCNCRNEVYHKQIGPGMFQQM-----------TEQVCDQCQNVKYEREGYFVTVDIEKGMQDG 222 (317)
Q Consensus 165 ~c~g~-----------~~C~g~G~~~~~~~~~g~~~~~-----------~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G 222 (317)
.|.|+ +.|+|+|.+.... |++++. ..++|+.|+|.+++.+.++++|.||||+.+|
T Consensus 161 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---g~~~~~~~C~~C~G~G~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G 237 (382)
T PRK14291 161 ACGGTGYDPGSGEKVCPTCGGSGEIYQRG---GFFRISQTCPTCGGEGVLREPCSKCNGRGLVIKKETIKVRIPPGVDNG 237 (382)
T ss_pred CCccccCCCCCCCccCCCCCCceEEEEec---ceEEEEecCCCCCCceEEccCCCCCCCCceEEeeeEEEEEeCCCCCCC
Confidence 78764 4567777654431 333221 2678999999999999999999999999999
Q ss_pred CEEEEcccCCCCC-CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCC
Q 021128 223 QEVVFYEDGEPKI-DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFG 301 (317)
Q Consensus 223 ~~i~~~g~G~~~~-~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~ 301 (317)
++|+|+|+|++++ ++.+|||||+|+++||+.|+|+|+||++++.|||.||++|++++|+|+||+.+.|.++..+++ |
T Consensus 238 ~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~--G 315 (382)
T PRK14291 238 SKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKE--G 315 (382)
T ss_pred CEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCccCC--C
Confidence 9999999999976 578999999999999999999999999999999999999999999999999899999988775 6
Q ss_pred cEEEecCCccccc
Q 021128 302 TSFAMTKKRIEVL 314 (317)
Q Consensus 302 ~~~~~~~k~~~~~ 314 (317)
+.++|+|+|+|..
T Consensus 316 ~~i~i~G~G~p~~ 328 (382)
T PRK14291 316 DKIRVPGKGMPRL 328 (382)
T ss_pred CEEEECCCCCCCC
Confidence 9999999999964
No 23
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-62 Score=467.27 Aligned_cols=284 Identities=29% Similarity=0.472 Sum_probs=238.2
Q ss_pred CccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHhHhhhCCccccccccccCccccccccCCCC
Q 021128 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNE-EANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 103 (317)
Q Consensus 25 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~-~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~ 103 (317)
.|||+||||+++||.+|||+|||+||++||||+|+++. +|+++|++|++||++|+|+.+|+.||+||+.++....++.+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~~ 82 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFN 82 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCcc
Confidence 79999999999999999999999999999999998664 68999999999999999999999999999987652111100
Q ss_pred CC--CCcccChhhhhhhccCCCC--------CCcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc---
Q 021128 104 RG--GGMGVNIQDIFSSFFGGGP--------MEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK--- 169 (317)
Q Consensus 104 ~~--~~~~~~~~d~F~~~fg~~~--------~~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~--- 169 (317)
.+ .++ .++.|+|++|||+.. ........++.|+++.|.|||+|+|+|+++++.+.+. .|..|.|+
T Consensus 83 ~~~~~~~-~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~ 161 (365)
T PRK14290 83 WDNFTHF-SDINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAK 161 (365)
T ss_pred ccccccc-cchhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCC
Confidence 00 112 267899999998521 0111112347899999999999999999999999886 56678764
Q ss_pred -------cccCccceEEEEEecCceeEEE--------------eeeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEc
Q 021128 170 -------RRCNCRNEVYHKQIGPGMFQQM--------------TEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFY 228 (317)
Q Consensus 170 -------~~C~g~G~~~~~~~~~g~~~~~--------------~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~ 228 (317)
+.|+|.|.+...+ ++|++.+. ..++|+.|+|.+++.+.++++|.||||+.+|++|+|+
T Consensus 162 ~~~~~~C~~C~G~G~~~~~~-~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~ 240 (365)
T PRK14290 162 NGKLITCPTCHGTGQQRIVR-GQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVK 240 (365)
T ss_pred CCCCccCCCCCCcCEEEEEe-ccCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECCCCCCCcEEEEc
Confidence 4577888655444 46665332 2678999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecC
Q 021128 229 EDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTK 308 (317)
Q Consensus 229 g~G~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~ 308 (317)
|+|++ +++.+|||+|+|++++|+.|+|+|+||+++++|||.+|++|++++|+|++|+ +.|.++..+++ |+.++|+|
T Consensus 241 g~G~~-~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~-i~V~Ip~g~~~--g~~iri~g 316 (365)
T PRK14290 241 GKGQS-YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREK-YNLKIPEGTQP--GEVLKIKG 316 (365)
T ss_pred cccCC-CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCce-EEEEECCccCC--CcEEEECC
Confidence 99997 6788999999999999999999999999999999999999999999999996 99999988875 79999999
Q ss_pred Cccccc
Q 021128 309 KRIEVL 314 (317)
Q Consensus 309 k~~~~~ 314 (317)
+|+|..
T Consensus 317 ~G~p~~ 322 (365)
T PRK14290 317 AGMPHL 322 (365)
T ss_pred CCCCCC
Confidence 999864
No 24
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=5.9e-62 Score=462.61 Aligned_cols=284 Identities=36% Similarity=0.611 Sum_probs=240.2
Q ss_pred ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCCCCC
Q 021128 26 SYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGRG 105 (317)
Q Consensus 26 ~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~~~ 105 (317)
|||++|||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||++|+|+.+|+.||+||+++++....+.+++
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~ 79 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGG 79 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCC
Confidence 7999999999999999999999999999999997 445889999999999999999999999999998875421110100
Q ss_pred -C-----CcccChhhhhhhccCCCCC--C-cccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc------
Q 021128 106 -G-----GMGVNIQDIFSSFFGGGPM--E-EDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK------ 169 (317)
Q Consensus 106 -~-----~~~~~~~d~F~~~fg~~~~--~-~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~------ 169 (317)
. +| .++.|+|++|||++.. . ......++.|+.+.|.|||||+|+|+++++.+.+. .|..|.|+
T Consensus 80 ~~~~~~~~~-~~~~~~f~~~fg~~~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 158 (354)
T TIGR02349 80 FNGFDIGFF-GDFGDIFGDFFGGGGGSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGT 158 (354)
T ss_pred cCCccccCc-CchhhhHHHHhccCcccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCC
Confidence 1 12 2467899999985321 1 12234578999999999999999999999999886 57778774
Q ss_pred -----cccCccceEEE-EEecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccC
Q 021128 170 -----RRCNCRNEVYH-KQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDG 231 (317)
Q Consensus 170 -----~~C~g~G~~~~-~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G 231 (317)
+.|+|.|.+.. ..+++|++++.. ..+|+.|+|.+++.+.++++|.||+|+++|++|+|+|+|
T Consensus 159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G 238 (354)
T TIGR02349 159 DPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKG 238 (354)
T ss_pred CCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECCCCCCCCEEEEecCc
Confidence 45777887654 467888887643 567888899999999999999999999999999999999
Q ss_pred CCCC-CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCc
Q 021128 232 EPKI-DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKR 310 (317)
Q Consensus 232 ~~~~-~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~ 310 (317)
++.+ ++.+|||+|+|++++|+.|+|+|+||++++.|||.|||+|+++.|+|||| .+.|.++..+++ |+.++|+|+|
T Consensus 239 ~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG-~i~v~ip~g~~~--g~~~~i~g~G 315 (354)
T TIGR02349 239 NAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDG-DVKLKIPAGTQS--GTVFRLKGKG 315 (354)
T ss_pred cCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCc-eEEEEECCcccC--CcEEEECCCC
Confidence 9865 45689999999999999999999999999999999999999999999999 589999887775 6999999999
Q ss_pred cccc
Q 021128 311 IEVL 314 (317)
Q Consensus 311 ~~~~ 314 (317)
+|..
T Consensus 316 ~p~~ 319 (354)
T TIGR02349 316 VPRL 319 (354)
T ss_pred cCCC
Confidence 9964
No 25
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.7e-62 Score=463.20 Aligned_cols=285 Identities=29% Similarity=0.569 Sum_probs=233.2
Q ss_pred CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCcccccccc--CC
Q 021128 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHA--AG 101 (317)
Q Consensus 24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~--~~ 101 (317)
.+|||++|||+++||.+|||+|||+||++||||++++ ..++++|++|++||++|+|+.+|+.||+||++++.... ++
T Consensus 2 ~~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~ 80 (372)
T PRK14300 2 SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA-KDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGG 80 (372)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCC
Confidence 3799999999999999999999999999999999974 44889999999999999999999999999998775321 11
Q ss_pred CCCCCCcccChhh----hhhhccCCCCCCcc-cccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc------
Q 021128 102 GGRGGGMGVNIQD----IFSSFFGGGPMEED-EKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK------ 169 (317)
Q Consensus 102 ~~~~~~~~~~~~d----~F~~~fg~~~~~~~-~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~------ 169 (317)
+++.++|+.++.+ +|+.|||++..... ..+.++.|+.+.|.|||+|+|+|+++++.+.+. .|..|.|+
T Consensus 81 ~g~~~~~~~~~~~~f~~~f~~~~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~ 160 (372)
T PRK14300 81 GGNHGGFHPDINDIFGDFFSDFMGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGE 160 (372)
T ss_pred CCCCCccccchhhhHHHHHHhhcCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCC
Confidence 1111222213334 44444443211111 122478999999999999999999999999886 56678774
Q ss_pred -----cccCccceEEEEEecCceeEEE------------eeeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCC
Q 021128 170 -----RRCNCRNEVYHKQIGPGMFQQM------------TEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGE 232 (317)
Q Consensus 170 -----~~C~g~G~~~~~~~~~g~~~~~------------~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~ 232 (317)
+.|+|.|.+... .|++++. ..++|+.|+|.+++.+.++++|.||+|+++|++|+|+|+|+
T Consensus 161 ~~~~C~~C~G~G~~~~~---~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~ 237 (372)
T PRK14300 161 TVTTCDACSGVGATRMQ---QGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGE 237 (372)
T ss_pred CCccCCCccCeEEEEEe---eceEEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEecccc
Confidence 357777765543 2444422 26789999999999999999999999999999999999999
Q ss_pred CCC-CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCcc
Q 021128 233 PKI-DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRI 311 (317)
Q Consensus 233 ~~~-~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~ 311 (317)
+.+ ++.+|||+|+|+++||+.|+|+|+||++++.|+|.+|++|+++.|+||||+.|.|.++..+++ |+.++|+|+|+
T Consensus 238 ~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~--g~~iri~g~G~ 315 (372)
T PRK14300 238 AGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQN--GDQLRLRSKGM 315 (372)
T ss_pred CCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCC--CcEEEECCCCC
Confidence 875 567899999999999999999999999999999999999999999999999899999988775 79999999999
Q ss_pred ccc
Q 021128 312 EVL 314 (317)
Q Consensus 312 ~~~ 314 (317)
|..
T Consensus 316 p~~ 318 (372)
T PRK14300 316 SKM 318 (372)
T ss_pred CCC
Confidence 864
No 26
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.3e-61 Score=460.33 Aligned_cols=286 Identities=34% Similarity=0.575 Sum_probs=237.8
Q ss_pred cCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCC
Q 021128 22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAG 101 (317)
Q Consensus 22 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~ 101 (317)
+..+|||++|||+++||.+|||+|||+||++||||+|++ ++|+++|++|++||++|+||.+|++||+||+++++.....
T Consensus 2 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~ 80 (378)
T PRK14283 2 AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQE 80 (378)
T ss_pred CCcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhccccccccccc
Confidence 457899999999999999999999999999999999985 5589999999999999999999999999999876521100
Q ss_pred C---C-C-C---CCcccChhhhhhhc-cCCCCCCcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc--
Q 021128 102 G---G-R-G---GGMGVNIQDIFSSF-FGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK-- 169 (317)
Q Consensus 102 ~---~-~-~---~~~~~~~~d~F~~~-fg~~~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~-- 169 (317)
+ + + . ++|+.++.++|+.| ||++. .....++.|+.+++.|||+|+|+|+++++.+.+. .|..|.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~f~~~~fgg~~---~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~ 157 (378)
T PRK14283 81 DIFNNINFEDIFQGFGFGIGNIFDMFGFGGGS---RHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRA 157 (378)
T ss_pred ccccccCccccccccccchhhhccccccCCCC---CCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCcccc
Confidence 0 0 0 0 11111345667766 65421 1223578999999999999999999999999875 56678764
Q ss_pred ---------cccCccceEEE-EEecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEE
Q 021128 170 ---------RRCNCRNEVYH-KQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVF 227 (317)
Q Consensus 170 ---------~~C~g~G~~~~-~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~ 227 (317)
+.|+|.|.+.+ .++++|++++.. .++|..|+|.+++.+.++++|.||+|+++|++|+|
T Consensus 158 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l 237 (378)
T PRK14283 158 EPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRV 237 (378)
T ss_pred CCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcEEEE
Confidence 45777887654 356677765432 56789999999999999999999999999999999
Q ss_pred cccCCCCC-CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEe
Q 021128 228 YEDGEPKI-DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAM 306 (317)
Q Consensus 228 ~g~G~~~~-~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~ 306 (317)
+|+|++.+ ++.+|||+|+|++++|+.|+|+|+||++++.|||.+|++|++++|+|||| .|.|.++..+++ |+.++|
T Consensus 238 ~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG-~i~v~ip~g~~~--g~~~ri 314 (378)
T PRK14283 238 SGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDG-PVELKIPAGTQS--GTTFRL 314 (378)
T ss_pred eccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCc-eEEEEeCCCCCC--CCEEEE
Confidence 99999865 46789999999999999999999999999999999999999999999999 589999888775 799999
Q ss_pred cCCccccc
Q 021128 307 TKKRIEVL 314 (317)
Q Consensus 307 ~~k~~~~~ 314 (317)
+|+|+|..
T Consensus 315 ~g~G~p~~ 322 (378)
T PRK14283 315 KGHGMPSL 322 (378)
T ss_pred CCCCCCCC
Confidence 99999853
No 27
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2e-60 Score=454.37 Aligned_cols=284 Identities=32% Similarity=0.493 Sum_probs=238.6
Q ss_pred CccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCCCC
Q 021128 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGR 104 (317)
Q Consensus 25 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~~ 104 (317)
.|||++|||+++||.+|||+|||+||++||||+|++ .+|+++|++|++||++|+||.+|+.||+||+++..+. .++++
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~-~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~-~~~~~ 79 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE-KGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGM-PGGDP 79 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-hhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccc-cCCcc
Confidence 599999999999999999999999999999999984 4588999999999999999999999999998764211 11111
Q ss_pred CCCcccChhhhhhhccCCCC-C--CcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc-----------
Q 021128 105 GGGMGVNIQDIFSSFFGGGP-M--EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK----------- 169 (317)
Q Consensus 105 ~~~~~~~~~d~F~~~fg~~~-~--~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~----------- 169 (317)
.++++++++|+|++|||++. . ....+..++.|+++.+.|||+|+|+|+++++.+.+. .|..|.|+
T Consensus 80 ~~~~~~d~~d~f~~~fg~~~~~~~~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~ 159 (371)
T PRK14292 80 FGGMGFDPMDIFEQLFGGAGFGGGRGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKT 159 (371)
T ss_pred cCccCCChHHHHHHhhCCCCcCCCCCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCcc
Confidence 12223467899999998532 1 111234578999999999999999999999999874 67788764
Q ss_pred -cccCccceEEE-EEecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCCCC
Q 021128 170 -RRCNCRNEVYH-KQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKI 235 (317)
Q Consensus 170 -~~C~g~G~~~~-~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~ 235 (317)
+.|+|.|.+.. .+..+|++++.. ...|+.|.|.+++.+.++++|.||+|+.+|++|+|+|+|++.+
T Consensus 160 C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~ 239 (371)
T PRK14292 160 CPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGP 239 (371)
T ss_pred CCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCCCC
Confidence 34777887653 355567765432 6789999999999999999999999999999999999999987
Q ss_pred CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCccccc
Q 021128 236 DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEVL 314 (317)
Q Consensus 236 ~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~~~ 314 (317)
++. |||||+|++++|+.|+|+|+||++++.|+|.+|++|+++.|+||||+ +.|.++..+++ |+.++|+|+|+|..
T Consensus 240 ~~~-GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~-~~v~ip~g~~~--g~~~~i~g~G~p~~ 314 (371)
T PRK14292 240 GGN-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGP-QVIEVKPGTQH--GDLHRLRGQGMPRL 314 (371)
T ss_pred CCC-CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCC-EEEecCCCcCC--CcEEEECCCCCCCC
Confidence 776 99999999999999999999999999999999999999999999998 47888877765 79999999999864
No 28
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.8e-60 Score=456.65 Aligned_cols=289 Identities=30% Similarity=0.534 Sum_probs=238.1
Q ss_pred cCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCC
Q 021128 22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAG 101 (317)
Q Consensus 22 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~ 101 (317)
+...|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||+||+++++.+...
T Consensus 2 ~~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~ 81 (386)
T PRK14289 2 AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGG 81 (386)
T ss_pred CccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCC
Confidence 34689999999999999999999999999999999999877799999999999999999999999999999876532111
Q ss_pred CCCCCCcccChhhhhhhc---cCC---CC------C--CcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCC
Q 021128 102 GGRGGGMGVNIQDIFSSF---FGG---GP------M--EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPA 166 (317)
Q Consensus 102 ~~~~~~~~~~~~d~F~~~---fg~---~~------~--~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c 166 (317)
++. ++.+.++.++|++| |++ +. . .......++.|+++.+.|||||+|+|+++++.+.+. .|..|
T Consensus 82 ~~~-~~~~~~~~~~f~~f~~~fg~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C 160 (386)
T PRK14289 82 GGF-SGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHC 160 (386)
T ss_pred CCC-CCCCcChhhhhHHhhhhhcccccCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCC
Confidence 110 11012344554333 542 10 0 011223478999999999999999999999999876 57778
Q ss_pred CCc-----------cccCccceEEEE-EecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCC
Q 021128 167 PGK-----------RRCNCRNEVYHK-QIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDG 222 (317)
Q Consensus 167 ~g~-----------~~C~g~G~~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G 222 (317)
.|+ +.|+|.|.+... +.++|++++.. ...|+.|+|.+++.+.++++|.||+|+++|
T Consensus 161 ~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G 240 (386)
T PRK14289 161 HGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAEG 240 (386)
T ss_pred CCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCCCCCCC
Confidence 664 457788876544 56677765422 567999999999999999999999999999
Q ss_pred CEEEEcccCCCCC-CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCC
Q 021128 223 QEVVFYEDGEPKI-DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFG 301 (317)
Q Consensus 223 ~~i~~~g~G~~~~-~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~ 301 (317)
++|+|+|+|++.+ ++.+|||+|+|++++|+.|+|+|+||++++.|+|.+|++|+++.|+|+||+ +.|.++..+++ |
T Consensus 241 ~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g~~~--g 317 (386)
T PRK14289 241 MQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGK-AKVKIEAGTQP--G 317 (386)
T ss_pred CEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCce-EEEEECCccCC--C
Confidence 9999999999875 567899999999999999999999999999999999999999999999997 89999887765 7
Q ss_pred cEEEecCCccccc
Q 021128 302 TSFAMTKKRIEVL 314 (317)
Q Consensus 302 ~~~~~~~k~~~~~ 314 (317)
+.++|+|+|+|..
T Consensus 318 ~~~ri~g~G~p~~ 330 (386)
T PRK14289 318 KVLRLRNKGLPSV 330 (386)
T ss_pred cEEEECCCCcCCC
Confidence 9999999999864
No 29
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.7e-60 Score=450.35 Aligned_cols=285 Identities=32% Similarity=0.559 Sum_probs=238.3
Q ss_pred CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCCC
Q 021128 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 103 (317)
Q Consensus 24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~ 103 (317)
..|||+||||+++||.+|||+|||+||++||||+|++. .|+++|++|++||++|+||.+|+.||+||++++.... +.+
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~-~~~ 79 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEP-GAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAA-GFP 79 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-CHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCC-CcC
Confidence 47999999999999999999999999999999999754 4889999999999999999999999999998765311 101
Q ss_pred CCCCcccChhhhhhhccCC-CC-C-----CcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc------
Q 021128 104 RGGGMGVNIQDIFSSFFGG-GP-M-----EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK------ 169 (317)
Q Consensus 104 ~~~~~~~~~~d~F~~~fg~-~~-~-----~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~------ 169 (317)
..+++ .++.|+|++|||+ +. . .......++.|+.+.+.|||||+|+|+++++.+.+. .|..|.|+
T Consensus 80 ~~~~~-~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~ 158 (374)
T PRK14293 80 DMGDM-GGFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGT 158 (374)
T ss_pred Ccccc-cchHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCC
Confidence 11112 1356899999963 11 0 011224578899999999999999999999999885 57778763
Q ss_pred -----cccCccceEEEE-EecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccC
Q 021128 170 -----RRCNCRNEVYHK-QIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDG 231 (317)
Q Consensus 170 -----~~C~g~G~~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G 231 (317)
+.|+|.|.+... ++++|++++.. +++|+.|.|.+++.+.++++|.||||+++|++|+|+|+|
T Consensus 159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G 238 (374)
T PRK14293 159 GPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEG 238 (374)
T ss_pred CCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCc
Confidence 457788876544 56778776533 567899999999999999999999999999999999999
Q ss_pred CCCC-CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCc
Q 021128 232 EPKI-DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKR 310 (317)
Q Consensus 232 ~~~~-~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~ 310 (317)
++.+ ++.+|||+|+|++++|+.|+|+|+||+++++|||.||++|+++.|+||||+ +.|.++..+++ |+.++|+|+|
T Consensus 239 ~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~-~~i~ip~~~~~--g~~~ri~g~G 315 (374)
T PRK14293 239 DAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGP-VELTIPAGTQP--NTVLTLENKG 315 (374)
T ss_pred cCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCC-EEEEeCCCCCC--CCEEEECCCC
Confidence 9865 456799999999999999999999999999999999999999999999997 78888877765 7999999999
Q ss_pred cccc
Q 021128 311 IEVL 314 (317)
Q Consensus 311 ~~~~ 314 (317)
+|..
T Consensus 316 ~p~~ 319 (374)
T PRK14293 316 VPRL 319 (374)
T ss_pred CCCC
Confidence 9964
No 30
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-60 Score=439.04 Aligned_cols=277 Identities=40% Similarity=0.709 Sum_probs=241.4
Q ss_pred CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCC
Q 021128 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG 102 (317)
Q Consensus 23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~ 102 (317)
.+..||+||||+++||.+|||||||+||++||||+|++ +.++|++|++||||||||++|++||+||+++++.+.+
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~-- 76 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGG-- 76 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCC--
Confidence 36789999999999999999999999999999999987 5699999999999999999999999999999854322
Q ss_pred CCCCCcccChhhhhhhccCCCCCCcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc----------cc
Q 021128 103 GRGGGMGVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK----------RR 171 (317)
Q Consensus 103 ~~~~~~~~~~~d~F~~~fg~~~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~----------~~ 171 (317)
+++++ . |++||+.+... .+...++.|+.+.+.|||||+|+|.+.++.++++ +|..|.|. ..
T Consensus 77 --~~g~~-~----f~~~F~~g~~~-~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~ 148 (337)
T KOG0712|consen 77 --GGGFG-G----FSQFFGFGGNG-GRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTT 148 (337)
T ss_pred --CCCCc-c----HHHhccCCCcC-ccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCC
Confidence 22322 1 77787744322 2334459999999999999999999999999887 57778764 34
Q ss_pred cCccce-EEEEEecCceeEEEe---------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCCCC
Q 021128 172 CNCRNE-VYHKQIGPGMFQQMT---------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKI 235 (317)
Q Consensus 172 C~g~G~-~~~~~~~~g~~~~~~---------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~ 235 (317)
|.|+|. +...+++||+.++++ ++.|+.|.|.+++.+.+.++|.|++|++++++|++.|++++.+
T Consensus 149 C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea~ 228 (337)
T KOG0712|consen 149 CRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEAP 228 (337)
T ss_pred CCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeecC
Confidence 667665 456799999988765 6799999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeC--CcccCCCCcEEEecCCcccc
Q 021128 236 DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTK--VSMNMCFGTSFAMTKKRIEV 313 (317)
Q Consensus 236 ~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~--~v~~~~~~~~~~~~~k~~~~ 313 (317)
+..+||+++.|..++|+.|.|.|+||++..+|+|.||++|+.+.+.||||+.+.+.+. .|+.| |+..++.|+|+|.
T Consensus 229 g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~--~~~~~v~~~gmp~ 306 (337)
T KOG0712|consen 229 GTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISP--GDTKRVEGEGMPI 306 (337)
T ss_pred CCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeCh--hHEEeecCCCccc
Confidence 9889999999999999999999999999999999999999999999999999988886 56654 7999999999997
Q ss_pred c
Q 021128 314 L 314 (317)
Q Consensus 314 ~ 314 (317)
.
T Consensus 307 ~ 307 (337)
T KOG0712|consen 307 F 307 (337)
T ss_pred c
Confidence 4
No 31
>PRK14299 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.6e-55 Score=404.39 Aligned_cols=234 Identities=38% Similarity=0.592 Sum_probs=198.4
Q ss_pred CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCC-
Q 021128 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAG- 101 (317)
Q Consensus 23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~- 101 (317)
+.+|||+||||+++||.+|||+|||+||++||||+|++ +.++++|++|++||++|+||.+|+.||+||++++..+..+
T Consensus 2 ~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~ 80 (291)
T PRK14299 2 AYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS-PGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGP 80 (291)
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCC
Confidence 35899999999999999999999999999999999974 4588999999999999999999999999998865421111
Q ss_pred --C-CCCCCcc----cChhhhhhhccCCC-C-CCc-------ccccccCCceEEeecccHHHHhcCceeEEEeeeeeecC
Q 021128 102 --G-GRGGGMG----VNIQDIFSSFFGGG-P-MEE-------DEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKP 165 (317)
Q Consensus 102 --~-~~~~~~~----~~~~d~F~~~fg~~-~-~~~-------~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~ 165 (317)
+ ++.++|. .+++|+|++|||++ . ... ....+++.|+++.+.|||+|++.|+++++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~------ 154 (291)
T PRK14299 81 PPGPPGGGDFSGFNVGDFSDFFQQLFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPLTLEEAYRGGEKVVEVA------ 154 (291)
T ss_pred CCCCCCCCCccccCcCCHHHHHHHHhCCCCCCCCcccccccccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC------
Confidence 0 1111111 25778999999852 1 110 12245789999999999999999999888442
Q ss_pred CCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCCCCCCCCccEEEE
Q 021128 166 APGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFR 245 (317)
Q Consensus 166 c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDL~v~ 245 (317)
.++++|.||||+++|++|+++|+|++. |||+|+
T Consensus 155 ------------------------------------------g~~~~V~Ip~G~~~G~~ir~~g~G~~~-----GDL~v~ 187 (291)
T PRK14299 155 ------------------------------------------GERLSVRIPPGVREGQVIRLAGKGRQG-----GDLYLV 187 (291)
T ss_pred ------------------------------------------CEEEEEecCCCcCCCcEEEECCCCCCC-----CCEEEE
Confidence 357899999999999999999999973 999999
Q ss_pred EEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCcccc
Q 021128 246 IRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEV 313 (317)
Q Consensus 246 i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~~ 313 (317)
|++++|+.|+|+|+||+++++|||.+|++|++++|+||||+ +.|.++..+++ |+.++|+|+|+|.
T Consensus 188 i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-~~v~ip~~~~~--g~~~rl~g~G~p~ 252 (291)
T PRK14299 188 VRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGP-VEVTIPPRTQA--GRKLRLKGKGWPR 252 (291)
T ss_pred EEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCC-EEEEeCCCcCC--CCEEEECCCCCCC
Confidence 99999999999999999999999999999999999999997 89999888876 6999999999995
No 32
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=100.00 E-value=4.3e-53 Score=394.01 Aligned_cols=252 Identities=28% Similarity=0.434 Sum_probs=205.4
Q ss_pred CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccc----ccccc
Q 021128 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEG----LKQHA 99 (317)
Q Consensus 24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~----~~~~~ 99 (317)
.+|||++|||+++||.+|||+|||+||++||||+|++. .++++|++|++||++|+||.+|+.||+||... +....
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~-~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~ 81 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP-DAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQF 81 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-cHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCccccccc
Confidence 47999999999999999999999999999999998754 58999999999999999999999999998642 22110
Q ss_pred CCCCCCCCc-ccChhhhhhhccCCCCC-CcccccccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccce
Q 021128 100 AGGGRGGGM-GVNIQDIFSSFFGGGPM-EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNE 177 (317)
Q Consensus 100 ~~~~~~~~~-~~~~~d~F~~~fg~~~~-~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~ 177 (317)
+ .++++.+ ..++.++|+.|||++.. ......+++.|+.+++.|||+|++.|+++++.+.+.+| +|.|.
T Consensus 82 ~-~~~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~~---------~g~G~ 151 (306)
T PRK10266 82 Q-HGDGQSFNAEDFDDIFSSIFGQHARQSRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPVY---------NAFGM 151 (306)
T ss_pred c-cCCCCCCCCCCHHHHHHHHhCCCCCCCCCCCCCCCCceEEEEEEEHHHhcCCceEEEEEecccc---------cCCCe
Confidence 1 0111111 12678999999985221 11123457899999999999999999999998765443 22221
Q ss_pred EEEEEecCceeEEEeeeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCeeE
Q 021128 178 VYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRFRR 256 (317)
Q Consensus 178 ~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F~R 256 (317)
++ ....++++|.||+|+++|++|+++|+|++.++ +.+|||+|+|+++||+.|+|
T Consensus 152 ----------~~---------------~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~ph~~f~r 206 (306)
T PRK10266 152 ----------IE---------------QEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDI 206 (306)
T ss_pred ----------EE---------------EeeeEEEEEEECCCCcCCcEEEEecCCcCCCCCCCCccEEEEEEEcCCCCeEE
Confidence 10 11246799999999999999999999998764 56799999999999999999
Q ss_pred eCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCccccc
Q 021128 257 EGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEVL 314 (317)
Q Consensus 257 ~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~~~ 314 (317)
+|+||+++++|||.+|++|++++|+|+||+ +.|.++..+++ |+.++|+|+|+|..
T Consensus 207 ~g~DL~~~~~Isl~~al~G~~~~i~~~~g~-v~v~ip~g~~~--g~~~ri~g~G~p~~ 261 (306)
T PRK10266 207 VGQDLEIVVPLAPWEAALGAKVTVPTLKES-ILLTIPPGSQA--GQRLRVKGKGLVSK 261 (306)
T ss_pred eCCceEEEEecCHHHHhCCCEEEeeCCCcc-EEEEeCCCcCC--CCEEEECCCCCCCC
Confidence 999999999999999999999999999998 88999877764 79999999999863
No 33
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-50 Score=363.24 Aligned_cols=292 Identities=51% Similarity=0.835 Sum_probs=251.6
Q ss_pred HHHhhhccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccc
Q 021128 15 LCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEG 94 (317)
Q Consensus 15 ~~~~~~~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~ 94 (317)
+.....+.+++|||+||||+++||..|||+|||+||++||||+|++++.|.+.|++|+.||||||||++|+.||+||+++
T Consensus 6 ~~~~~~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEeg 85 (336)
T KOG0713|consen 6 LSGAEAVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEG 85 (336)
T ss_pred hhhhhhhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhh
Confidence 34445567789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCcccChhhhhhhccCC-----CCCCcccccccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCc
Q 021128 95 LKQHAAGGGRGGGMGVNIQDIFSSFFGG-----GPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGK 169 (317)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~d~F~~~fg~-----~~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~ 169 (317)
++.....+.++++ -.++|+.||+. ++....+...+|.++...++.+++++|.|...+..+.+.+...|+|+
T Consensus 86 L~~~~~~~~~g~~----~~~~f~~~f~dfg~~~~g~~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~~g~ 161 (336)
T KOG0713|consen 86 LKDENKDGEGGGG----GNDIFSAFFGDFGVTVGGNPLEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPAPGT 161 (336)
T ss_pred hcccccccccCCc----ccchHHHhhcccccccCCCcccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceeecCcc
Confidence 9864311111111 14566666542 12223344678999999999999999999988888888889999999
Q ss_pred cccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCCCCCCCCccEEEEEEEe
Q 021128 170 RRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTA 249 (317)
Q Consensus 170 ~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDL~v~i~v~ 249 (317)
..|+|+-..+.++.++|.++..+...|..|.+.+...++..+++.+..|...|....+..+|.+...+.+||+++.+..-
T Consensus 162 ~~~~~~~~~~~~~~~~g~~~~~q~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~gD~~f~~~~y 241 (336)
T KOG0713|consen 162 RKCNCRLEMFTQQEGPGRFQMLQEAVCDECPNVKLVLEEDPLEVEFERGDADGPEEIFELEGEPHIDGVPGDLFFKIVSY 241 (336)
T ss_pred cccCChhhheeeccCCChhhhhhhhhhccCCccceeecCCceeeeeeecccCCceeeeeccCCcceecccCCceeeeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred CCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCccc
Q 021128 250 PHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIE 312 (317)
Q Consensus 250 ~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~ 312 (317)
+|+.|.|.++|+++++.+++.+++.|+..++.++|+..+.++...+.-|+ -.++..+-|+|
T Consensus 242 ~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~~~~~p~--~~~~~~~~~~~ 302 (336)
T KOG0713|consen 242 THPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRKKITWPG--ARTRKKGEGMP 302 (336)
T ss_pred cccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhhhccccc--hhhhhhhccch
Confidence 99999999999999999999999999999999999998888877666552 33444444444
No 34
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=100.00 E-value=5.8e-42 Score=338.03 Aligned_cols=141 Identities=12% Similarity=0.137 Sum_probs=126.5
Q ss_pred CceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEEEEE
Q 021128 135 DDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVD 214 (317)
Q Consensus 135 ~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~ 214 (317)
-++.+.+.|+|+++|+|+++++.+.|.+|+ |.|...+.+.++++|.
T Consensus 657 ~dI~y~l~vtLEeLY~G~tKkIKitR~V~~----------------------------------g~G~ktvkE~ktLeVk 702 (871)
T TIGR03835 657 VNLVYEEEVPQILFFNNQIKEIKYTRHTVD----------------------------------GNTESTTNEAITLEIQ 702 (871)
T ss_pred cceEEecccCHHHHhCCCeEEEEEEEeecc----------------------------------CCCcceeeeeEEEEEe
Confidence 478999999999999999999999887752 1222345567899999
Q ss_pred ecCCCCCCCEEEEcccCCCCCCCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCC
Q 021128 215 IEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKV 294 (317)
Q Consensus 215 Ip~G~~~G~~i~~~g~G~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~ 294 (317)
||+|+++|++|+|+|+|++++++. |||+|+|+++||+.|+|+|+|||+++.|+|.+||+|+++.|+||||+ +.|+++.
T Consensus 703 IPpGVkdGqkIRf~GeGDegpgg~-GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EALLGgtIeIpTLDGr-VkLkIPp 780 (871)
T TIGR03835 703 LPITSQLNISAIFKGFGHDFGNGC-GDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGGIIDVFGPNKL-FNVRIPG 780 (871)
T ss_pred cCCCCCCCCEEEeccccCCCCCCC-CCEEEEEEEcCCCCeEEECCeEEEEEecCHHHHhcCCEEEeeCCCCC-EEEeeCC
Confidence 999999999999999999977664 99999999999999999999999999999999999999999999998 8999998
Q ss_pred cccCCCCcEEEecCCcccc
Q 021128 295 SMNMCFGTSFAMTKKRIEV 313 (317)
Q Consensus 295 v~~~~~~~~~~~~~k~~~~ 313 (317)
.+++ |+.++|+|+|+|.
T Consensus 781 gTqp--GqvLRIkGKGMP~ 797 (871)
T TIGR03835 781 GIKV--NDQVIFKDLGLTK 797 (871)
T ss_pred CCCC--CcEEEECCCCCCC
Confidence 8875 7999999999984
No 35
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-37 Score=282.78 Aligned_cols=226 Identities=33% Similarity=0.519 Sum_probs=185.6
Q ss_pred CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCCC
Q 021128 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 103 (317)
Q Consensus 24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~ 103 (317)
..|||+||||+++|+..|||+||++||++||||.|.++ +|+++|++|.+|||+|+|+++|+.||++|..+ ..
T Consensus 42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~-~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~--~~----- 113 (288)
T KOG0715|consen 42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK-EASKKFKEISEAYEILSDEEKRQEYDVYGLEQ--HG----- 113 (288)
T ss_pred CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc-chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc--cc-----
Confidence 44999999999999999999999999999999999987 59999999999999999999999999999875 10
Q ss_pred CCCCcccChhhhhhhccCCCCCCcccccccCCceEEeecccHHHHhcCceeEEEeee-eeecCCCCc-----------cc
Q 021128 104 RGGGMGVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREK-NVIKPAPGK-----------RR 171 (317)
Q Consensus 104 ~~~~~~~~~~d~F~~~fg~~~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r-~v~~~c~g~-----------~~ 171 (317)
+.++ ++.++|..+|++. ..+...+.+.++.+.++|++|..|+.+.+.+.. ..|..|.+. ..
T Consensus 114 ~~~g---~~~~~~~~~~~~~----~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 186 (288)
T KOG0715|consen 114 EFGG---NPFDVFLEFFGGK----MNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKT 186 (288)
T ss_pred cccC---CccchHHHhhccc----ccccccCcccccccccCHHHHhhccccceEEEeecccccccCcCcccccccccchh
Confidence 1111 6788999999761 223345678889999999999999987777765 467777654 45
Q ss_pred cCccceEEEEEecC---------ceeEEEeeeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCCCCCCCCccE
Q 021128 172 CNCRNEVYHKQIGP---------GMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDL 242 (317)
Q Consensus 172 C~g~G~~~~~~~~~---------g~~~~~~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDL 242 (317)
|.|.|.+......+ .+......+.|..|.|.+.+...+.+.|.+|+|+.++.+|++.+.|.. ||
T Consensus 187 ~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~~-------~l 259 (288)
T KOG0715|consen 187 CSGRGLVSNPKEDPFILYTCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHGND-------DL 259 (288)
T ss_pred hhCcccccccccCCcceeecccccccceeccchHHHhhcchhhhhheeEEeecCcccccccEEEEecCCcc-------eE
Confidence 77777443322111 112223355699999999999999999999999999999999998875 99
Q ss_pred EEEEEEeCCCCeeEeCCcEEEEEecCHHH
Q 021128 243 KFRIRTAPHDRFRREGNNLHTTVTVTLVQ 271 (317)
Q Consensus 243 ~v~i~v~~h~~F~R~G~DL~~~~~Isl~e 271 (317)
+|.+.|.+++.|+|+|.|+++++.|++.|
T Consensus 260 ~v~~~v~~~~~~~r~~~~i~~~~~i~~~~ 288 (288)
T KOG0715|consen 260 FVRLIVAKSPSFRREGKDILYDAIISFTQ 288 (288)
T ss_pred EEEEEeccCcccccccCcccccccccccC
Confidence 99999999999999999999999999754
No 36
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.1e-25 Score=207.19 Aligned_cols=255 Identities=34% Similarity=0.538 Sum_probs=194.5
Q ss_pred CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCC
Q 021128 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG 102 (317)
Q Consensus 24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~ 102 (317)
..|||++|+|.++|+.+||++||+++|++||||+|+.+ ..|+++|++|++||++|+|+.+|..||+||++++.+.....
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~~ 81 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSFS 81 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCCC
Confidence 57999999999999999999999999999999998877 23666899999999999999999999999997665421100
Q ss_pred C-CCCC---c-ccChhhhhhhccCCCCC-C-----------------------------c-----------ccccccCCc
Q 021128 103 G-RGGG---M-GVNIQDIFSSFFGGGPM-E-----------------------------E-----------DEKIVKGDD 136 (317)
Q Consensus 103 ~-~~~~---~-~~~~~d~F~~~fg~~~~-~-----------------------------~-----------~~~~~kg~d 136 (317)
+ ...+ + ..+..+.|.+|||.... . . .....+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (306)
T KOG0714|consen 82 SSFTSELFYFLFRKPDKDFYEFFGVSSPFSGSKKGYRDKNAAPGEEAFKSEGKAFQSLYGPKRKQYDSSGSDRSARQSPP 161 (306)
T ss_pred CCCCCCcceeccCchhhhHHHHhCCCCCCccccccCCccccccCccccccccccccccCCCcccccccccccccccCCCC
Confidence 1 0111 1 12446667777762110 0 0 001111223
Q ss_pred eEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEEEEEec
Q 021128 137 VIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIE 216 (317)
Q Consensus 137 i~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~Ip 216 (317)
+...+.+++++.+.|+.....+.+....... .. .........+.++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~----~~~~~~~~~~~~~ 207 (306)
T KOG0714|consen 162 VEHPLRVSLEDLYKGESKKMKISRQSFTSNG------------------------------RE----GSSRSRYLSISIK 207 (306)
T ss_pred ccCCcceeHHHhccccceeeecccccccCCc------------------------------cc----ccCccceeEEecc
Confidence 4444555777888887776665543221110 00 1235677899999
Q ss_pred CCCCCCCEEEEcccCCCCCCCCCccEEEEEEEeCCCCeeEeCCcEEEE--EecCHHHHhcCCEEEEecCCCCeEEEeeC-
Q 021128 217 KGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNLHTT--VTVTLVQALVGFEKTIEHLDEHLVDISTK- 293 (317)
Q Consensus 217 ~G~~~G~~i~~~g~G~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~--~~Isl~eAllG~~~~v~tldG~~i~i~~~- 293 (317)
+++..|+.+..+.+|+..++..+-++++.+..++|+.|.|.+.||... ..|++.+|++|....+++++|..+.+...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (306)
T KOG0714|consen 208 PGWKEGTKITFPEEGDEEPGILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEISLKEALLGVTVFVPTLDGRSYSLSINK 287 (306)
T ss_pred CCcccccceeccccccccCCcCcceeEEEEecCCcccccCCCccceecccceeehhhhhcCcceeeecccCccccCcccc
Confidence 999999999999999988888899999999999999999999999999 99999999999999999999999999988
Q ss_pred CcccCCCCcEEEecCCccccc
Q 021128 294 VSMNMCFGTSFAMTKKRIEVL 314 (317)
Q Consensus 294 ~v~~~~~~~~~~~~~k~~~~~ 314 (317)
.++.+ +....+++.|+|+.
T Consensus 288 ~~~~~--~~~~~~~~~~~~~~ 306 (306)
T KOG0714|consen 288 DLIEP--GEEDVIPGEGLPCP 306 (306)
T ss_pred cccCC--CceeeecCCCCCCC
Confidence 77765 68999999999863
No 37
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=4.6e-20 Score=162.63 Aligned_cols=192 Identities=31% Similarity=0.450 Sum_probs=132.2
Q ss_pred cCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchH-HHHHHHHHHHhHhhhCCccccccccccC-cccccccc
Q 021128 22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEE-ANKRFAEINNAYEVLSDSETRNIYDTYG-EEGLKQHA 99 (317)
Q Consensus 22 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~-~~~~f~~i~~Ay~~L~d~~~r~~YD~~G-~~~~~~~~ 99 (317)
....+||+||||+++|+..||++|||++|++||||+++.++. +.++|+.|++||++|+|+.+|+.||+++ ........
T Consensus 3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~~~~~~~~~~ 82 (237)
T COG2214 3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIGADNYFPGKS 82 (237)
T ss_pred hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhcccccCcccc
Confidence 346799999999999999999999999999999999998875 8999999999999999999999999974 33222111
Q ss_pred CCCCCC-CCcc-cChhhhhhhccCCCCC----C------------------------cccccccCC-ceEEeecccHHHH
Q 021128 100 AGGGRG-GGMG-VNIQDIFSSFFGGGPM----E------------------------EDEKIVKGD-DVIVELDATLEDL 148 (317)
Q Consensus 100 ~~~~~~-~~~~-~~~~d~F~~~fg~~~~----~------------------------~~~~~~kg~-di~~~l~vtlee~ 148 (317)
...... .... ..+.+++..+++.... . .......+. +....+.+++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (237)
T COG2214 83 YRESAAFPIEGSLQLTGLYEEWRGKRNKTERKASLADLLSRGLSGLAAALSLFADEAALRSGSLRRRDLAANLADNFEEA 162 (237)
T ss_pred ccccccccccccccHHHHHHhhcccccccccccchhhhcccccccccccccccccccccccccccccceeeeeeccHHHH
Confidence 000000 0000 1233444443332110 0 000000001 3444455555555
Q ss_pred hcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEc
Q 021128 149 YMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFY 228 (317)
Q Consensus 149 ~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~ 228 (317)
+.+....+.+. ......+.+|.|+..+..+++.
T Consensus 163 ~~~~~~~~~~~-----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 195 (237)
T COG2214 163 LAGVKKAVARL-----------------------------------------------LGKALKSTIKAGALEGKALRLK 195 (237)
T ss_pred hcCcceeeecc-----------------------------------------------ccccccccCCcccccCceeeec
Confidence 55544433221 1223338999999999999999
Q ss_pred ccCCCCCCCCCccEEEEEEEeCCCCeeEeCCcE
Q 021128 229 EDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNL 261 (317)
Q Consensus 229 g~G~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL 261 (317)
+++.... +..++.+..+..++|+.|..+++++
T Consensus 196 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (237)
T COG2214 196 GLLKSAR-GALGKARLKELSKRHPPFALEGDDK 227 (237)
T ss_pred ccCCcCC-CCcccceeeeeccCCCCccccCCcc
Confidence 9998877 7789999999999999999999999
No 38
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.7e-21 Score=171.33 Aligned_cols=74 Identities=58% Similarity=0.970 Sum_probs=70.5
Q ss_pred CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCcccccc
Q 021128 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQ 97 (317)
Q Consensus 24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~ 97 (317)
..|+|+|||++++|+.++||||||+||++||||++++++++.++|++||+||++|+||.+|..||.||+.++.-
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l 103 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKL 103 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHH
Confidence 56799999999999999999999999999999999998889999999999999999999999999999987754
No 39
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1e-20 Score=172.94 Aligned_cols=90 Identities=44% Similarity=0.786 Sum_probs=79.9
Q ss_pred CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCCC
Q 021128 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 103 (317)
Q Consensus 24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~ 103 (317)
..|||++|||+.+|+.+||++|||+.|++||||+||+++.|.++|+++.+||+||+|+.+|+.||++|..+....
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~----- 78 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ----- 78 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch-----
Confidence 789999999999999999999999999999999999999999999999999999999999999999998765322
Q ss_pred CCCCcccChhhhhhhccCC
Q 021128 104 RGGGMGVNIQDIFSSFFGG 122 (317)
Q Consensus 104 ~~~~~~~~~~d~F~~~fg~ 122 (317)
++ .+..++|.+.|++
T Consensus 79 ---~~-~d~~~~~r~~f~~ 93 (296)
T KOG0691|consen 79 ---GR-EDQADGFRKKFGS 93 (296)
T ss_pred ---hh-hhHHHHHHHHhhh
Confidence 11 2667778777764
No 40
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.80 E-value=3.5e-20 Score=188.03 Aligned_cols=76 Identities=36% Similarity=0.672 Sum_probs=70.4
Q ss_pred ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCcccccc
Q 021128 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQ 97 (317)
Q Consensus 21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~ 97 (317)
....++||++|||+++||.+|||+|||+||++||||+++++ .|.++|++|++||+|||||.+|+.||+||..+++.
T Consensus 569 ~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~ 644 (1136)
T PTZ00341 569 EIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG 644 (1136)
T ss_pred cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence 34578999999999999999999999999999999999876 48899999999999999999999999999987653
No 41
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=7.5e-20 Score=172.14 Aligned_cols=74 Identities=49% Similarity=0.900 Sum_probs=69.2
Q ss_pred CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHhHhhhCCccccccccccCccccc
Q 021128 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNE---EANKRFAEINNAYEVLSDSETRNIYDTYGEEGLK 96 (317)
Q Consensus 23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~ 96 (317)
.+.|||.+|+|+++||.+||++|||++++.||||+..++. .|++.|+.|.+||||||||.+|++||.||++|++
T Consensus 7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 3569999999999999999999999999999999987553 4899999999999999999999999999999987
No 42
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=5.4e-19 Score=166.34 Aligned_cols=77 Identities=52% Similarity=0.813 Sum_probs=69.7
Q ss_pred ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHhHhhhCCccccccccccCcccccc
Q 021128 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQ 97 (317)
Q Consensus 21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~ 97 (317)
....+.||++|||.++|+..|||++||+||++||||+||+. ++|.++|+.|+.||+|||||..|+.||..-++-|..
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~ 81 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRG 81 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcC
Confidence 34568899999999999999999999999999999998865 469999999999999999999999999988766653
No 43
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.75 E-value=7.8e-19 Score=126.06 Aligned_cols=63 Identities=60% Similarity=1.016 Sum_probs=59.9
Q ss_pred ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHhHhhhCCcccccccc
Q 021128 26 SYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNE-EANKRFAEINNAYEVLSDSETRNIYD 88 (317)
Q Consensus 26 ~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~-~~~~~f~~i~~Ay~~L~d~~~r~~YD 88 (317)
|||+||||+++|+.++||+||+++++++|||+++.+. .+.+.|+.|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999987655 68899999999999999999999998
No 44
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.74 E-value=2.4e-18 Score=157.45 Aligned_cols=80 Identities=45% Similarity=0.729 Sum_probs=70.5
Q ss_pred hccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHhHhhhCCccccccccccCccccc
Q 021128 20 NVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNE---EANKRFAEINNAYEVLSDSETRNIYDTYGEEGLK 96 (317)
Q Consensus 20 ~~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~ 96 (317)
..+..+|||.||||.++|+..||.||||++|.+||||...+.+ .|+++|-.|..|-|||+||++|++||. |++.++
T Consensus 389 kqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD 467 (504)
T KOG0624|consen 389 KQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLD 467 (504)
T ss_pred HHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCC
Confidence 3455799999999999999999999999999999999988765 389999999999999999999999996 666666
Q ss_pred cccC
Q 021128 97 QHAA 100 (317)
Q Consensus 97 ~~~~ 100 (317)
...+
T Consensus 468 ~Es~ 471 (504)
T KOG0624|consen 468 PESQ 471 (504)
T ss_pred hhhc
Confidence 4433
No 45
>PHA03102 Small T antigen; Reviewed
Probab=99.73 E-value=3.9e-18 Score=141.99 Aligned_cols=85 Identities=22% Similarity=0.371 Sum_probs=72.2
Q ss_pred CccchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCC
Q 021128 25 KSYYEVLQVPRGA--SDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG 102 (317)
Q Consensus 25 ~~~Y~iLgv~~~a--s~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~ 102 (317)
+.+|++|||+++| |.+|||+|||++|+++|||++++ .++|++|++||++|+|+.+|..||.+|.+.....
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~---- 76 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEE---- 76 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCcccccc----
Confidence 4689999999999 99999999999999999999864 3699999999999999999999999998754321
Q ss_pred CCCCCcccChhhhhhhccCCC
Q 021128 103 GRGGGMGVNIQDIFSSFFGGG 123 (317)
Q Consensus 103 ~~~~~~~~~~~d~F~~~fg~~ 123 (317)
.. .+.++|...||+.
T Consensus 77 ---~~---~~~~~f~~~fg~~ 91 (153)
T PHA03102 77 ---ED---VPSGYVGATFGDR 91 (153)
T ss_pred ---cc---cHHHHhhhhcCCc
Confidence 11 3677888888764
No 46
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.7e-18 Score=148.86 Aligned_cols=70 Identities=49% Similarity=0.841 Sum_probs=65.2
Q ss_pred CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHHhHhhhCCccccccccccCcc
Q 021128 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQ--GNEEANKRFAEINNAYEVLSDSETRNIYDTYGEE 93 (317)
Q Consensus 24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~--~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~ 93 (317)
.+|+|+||||.++|+..+|++||++||+++|||+++ +..+|.++|+.++.||.||+|.++|+.||+.|.-
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i 84 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI 84 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence 459999999999999999999999999999999994 4457999999999999999999999999998864
No 47
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.9e-17 Score=142.41 Aligned_cols=73 Identities=38% Similarity=0.708 Sum_probs=67.4
Q ss_pred cCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccc
Q 021128 22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEG 94 (317)
Q Consensus 22 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~ 94 (317)
....|+|+||||+++||.+|||||||+|++++|||++++..+.++.|..|++||+.|+|+..|..|..||+.-
T Consensus 96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PD 168 (230)
T KOG0721|consen 96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPD 168 (230)
T ss_pred hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCC
Confidence 3467999999999999999999999999999999999876667889999999999999999999999999753
No 48
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.68 E-value=1e-16 Score=113.39 Aligned_cols=59 Identities=69% Similarity=1.095 Sum_probs=54.5
Q ss_pred CccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHhHhhhCCccc
Q 021128 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQG-NEEANKRFAEINNAYEVLSDSET 83 (317)
Q Consensus 25 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~-~~~~~~~f~~i~~Ay~~L~d~~~ 83 (317)
+|||++|||+++++.++||+||+++++.+|||++++ .+.+.+.|++|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 489999999999999999999999999999999986 45588999999999999999853
No 49
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.65 E-value=3.2e-16 Score=108.76 Aligned_cols=55 Identities=69% Similarity=1.113 Sum_probs=51.7
Q ss_pred ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCC
Q 021128 26 SYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSD 80 (317)
Q Consensus 26 ~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d 80 (317)
|||++|||+++++.++||++|+++++++|||+++....+.+.|++|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999998745588999999999999986
No 50
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=6.6e-16 Score=135.51 Aligned_cols=85 Identities=39% Similarity=0.629 Sum_probs=70.3
Q ss_pred hhhHHHHHHHHHHHhhhcc-----CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhh
Q 021128 4 RRARLLFLLCALCYALNVI-----AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVL 78 (317)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~-----~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L 78 (317)
++..|.++.++.+...... ...|.|+||||+++|+.+||.+|||+||+++|||++++.+ +.+.|..|.+|||+|
T Consensus 7 ~rw~Lvl~~Llp~l~vgl~egLYCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e-~k~~F~~iAtayeil 85 (329)
T KOG0722|consen 7 ERWCLVLILLLPSLFVGLSEGLYCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPE-SKKLFVKIATAYEIL 85 (329)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhcccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCch-hhhhhhhhhcccccc
Confidence 5555554444443333222 3579999999999999999999999999999999998766 679999999999999
Q ss_pred CCccccccccc
Q 021128 79 SDSETRNIYDT 89 (317)
Q Consensus 79 ~d~~~r~~YD~ 89 (317)
.|.+.|..||-
T Consensus 86 kd~e~rt~ydy 96 (329)
T KOG0722|consen 86 KDNETRTQYDY 96 (329)
T ss_pred cchhhHHhHHH
Confidence 99999999995
No 51
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.4e-15 Score=142.11 Aligned_cols=97 Identities=44% Similarity=0.780 Sum_probs=78.9
Q ss_pred HHhhhccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHhHhhhCCccccccccccCccc
Q 021128 16 CYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRNIYDTYGEEG 94 (317)
Q Consensus 16 ~~~~~~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~ 94 (317)
......++.+|||.|||++++||..|||+|||++|+.+|||++..+ .+++.+|+++-+||.+|+||.+|..||. |..
T Consensus 364 ~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ds-g~d- 441 (486)
T KOG0550|consen 364 QLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDS-GQD- 441 (486)
T ss_pred HHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccc-ccc-
Confidence 3445567789999999999999999999999999999999999887 6799999999999999999999999996 211
Q ss_pred cccccCCCCCCCCcccChhhhhhhc
Q 021128 95 LKQHAAGGGRGGGMGVNIQDIFSSF 119 (317)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~d~F~~~ 119 (317)
+.. .+ +++++ ++|.++|..|
T Consensus 442 le~--~~-~~~a~--~dp~~~~~a~ 461 (486)
T KOG0550|consen 442 LEE--VG-SGGAG--FDPFNIFRAF 461 (486)
T ss_pred hhh--hc-CCCcC--cChhhhhhhc
Confidence 111 11 11233 4888888877
No 52
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.49 E-value=3.5e-14 Score=121.46 Aligned_cols=65 Identities=26% Similarity=0.461 Sum_probs=57.7
Q ss_pred CccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHhHhhhCCccccccccc
Q 021128 25 KSYYEVLQVPRG--ASDEQIKRAYRKLALKYHPDKNQGNE-----EANKRFAEINNAYEVLSDSETRNIYDT 89 (317)
Q Consensus 25 ~~~Y~iLgv~~~--as~~eIk~ayr~la~~~hPd~~~~~~-----~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 89 (317)
.|||++|||++. ++.++|+++||++++++|||+..... .+.+.|+.||+||++|+||.+|+.|+-
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 489999999996 78899999999999999999976542 256789999999999999999999984
No 53
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.48 E-value=4.4e-14 Score=120.13 Aligned_cols=65 Identities=31% Similarity=0.538 Sum_probs=57.5
Q ss_pred CccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH---HHHHHHHHHHhHhhhCCccccccccc
Q 021128 25 KSYYEVLQVPRG--ASDEQIKRAYRKLALKYHPDKNQGNEE---ANKRFAEINNAYEVLSDSETRNIYDT 89 (317)
Q Consensus 25 ~~~Y~iLgv~~~--as~~eIk~ayr~la~~~hPd~~~~~~~---~~~~f~~i~~Ay~~L~d~~~r~~YD~ 89 (317)
.|||++|||++. ++.++|+++||++++++|||++.+..+ +...+..||+||++|+||.+|+.|+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL 71 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML 71 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 589999999996 789999999999999999999875432 33568899999999999999999984
No 54
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.44 E-value=1.3e-13 Score=117.87 Aligned_cols=68 Identities=26% Similarity=0.414 Sum_probs=60.3
Q ss_pred cCCCccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHhHhhhCCccccccccc
Q 021128 22 IAGKSYYEVLQVPRG--ASDEQIKRAYRKLALKYHPDKNQGNEE-----ANKRFAEINNAYEVLSDSETRNIYDT 89 (317)
Q Consensus 22 ~~~~~~Y~iLgv~~~--as~~eIk~ayr~la~~~hPd~~~~~~~-----~~~~f~~i~~Ay~~L~d~~~r~~YD~ 89 (317)
++..|||++|||++. .+..+|+++||++++++|||++...+. +.+.|..||+||++|+||.+|+.|+-
T Consensus 1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 457899999999997 668999999999999999999865432 56789999999999999999999994
No 55
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.44 E-value=1.3e-13 Score=118.21 Aligned_cols=67 Identities=22% Similarity=0.388 Sum_probs=58.1
Q ss_pred CCCccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchHH-----HHHHHHHHHhHhhhCCccccccccc
Q 021128 23 AGKSYYEVLQVPRG--ASDEQIKRAYRKLALKYHPDKNQGNEEA-----NKRFAEINNAYEVLSDSETRNIYDT 89 (317)
Q Consensus 23 ~~~~~Y~iLgv~~~--as~~eIk~ayr~la~~~hPd~~~~~~~~-----~~~f~~i~~Ay~~L~d~~~r~~YD~ 89 (317)
...|||++|||++. ++..+|+++||++++++|||+++....+ .+.++.||+||++|+||.+|+.|+.
T Consensus 4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 35899999999995 6899999999999999999998754433 3446899999999999999999994
No 56
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.40 E-value=3.1e-13 Score=107.06 Aligned_cols=55 Identities=27% Similarity=0.466 Sum_probs=48.4
Q ss_pred ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhC
Q 021128 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLS 79 (317)
Q Consensus 21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~ 79 (317)
.+...++|++|||+++||.+|||+|||+|++++|||++++ .+.|++|++||++|.
T Consensus 61 ~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs----~~~~~kIneAyevL~ 115 (116)
T PTZ00100 61 PMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS----TYIASKVNEAKDLLL 115 (116)
T ss_pred CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHh
Confidence 3345789999999999999999999999999999999643 368899999999995
No 57
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=6.6e-13 Score=125.63 Aligned_cols=68 Identities=37% Similarity=0.560 Sum_probs=63.5
Q ss_pred ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccc
Q 021128 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDT 89 (317)
Q Consensus 21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 89 (317)
.....|.|.+|||++++|.++|||.||++|..-|||||..+ .|++.|+.++.|||+|+|+.+|+.||.
T Consensus 231 e~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~-~A~Eafk~Lq~Afevig~~~kR~eYd~ 298 (490)
T KOG0720|consen 231 ELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIP-RAEEAFKKLQVAFEVIGDSVKRKEYDL 298 (490)
T ss_pred hhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCCh-hHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence 33478999999999999999999999999999999999954 499999999999999999999999996
No 58
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.31 E-value=1.7e-12 Score=118.68 Aligned_cols=58 Identities=41% Similarity=0.596 Sum_probs=51.5
Q ss_pred CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---c----hHHHHHHHHHHHhHhhhCCc
Q 021128 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQG---N----EEANKRFAEINNAYEVLSDS 81 (317)
Q Consensus 24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~---~----~~~~~~f~~i~~Ay~~L~d~ 81 (317)
-.++|++|||+++||.+|||+|||+|+++||||++.+ + +.|+++|++|++||++|+..
T Consensus 199 ~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 199 LEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred HHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3689999999999999999999999999999999643 1 34889999999999999853
No 59
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.29 E-value=2.9e-12 Score=120.75 Aligned_cols=73 Identities=34% Similarity=0.651 Sum_probs=66.3
Q ss_pred CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----chHHHHHHHHHHHhHhhhCCccccccccccCccccc
Q 021128 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQG-----NEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLK 96 (317)
Q Consensus 24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~-----~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~ 96 (317)
.-|+|+|||++.++|..+||++||+|+.|+|||+-++ ..+.++.+.+|++||+.|+|+..|..|-.||.-...
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~p 174 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSP 174 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCC
Confidence 5799999999999999999999999999999999765 235789999999999999999999999999975443
No 60
>PHA02624 large T antigen; Provisional
Probab=99.29 E-value=3.4e-12 Score=126.43 Aligned_cols=61 Identities=23% Similarity=0.453 Sum_probs=56.4
Q ss_pred CCccchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCcccccccc
Q 021128 24 GKSYYEVLQVPRGA--SDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYD 88 (317)
Q Consensus 24 ~~~~Y~iLgv~~~a--s~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD 88 (317)
.+++|++|||+++| +.+|||+|||++|++||||++++ +++|++|++||++|+|+.+|..|+
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd----eekfk~Ln~AYevL~d~~k~~r~~ 72 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD----EEKMKRLNSLYKKLQEGVKSARQS 72 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc----HHHHHHHHHHHHHHhcHHHhhhcc
Confidence 46899999999999 99999999999999999999753 479999999999999999999993
No 61
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=99.23 E-value=1.5e-11 Score=92.45 Aligned_cols=54 Identities=24% Similarity=0.329 Sum_probs=46.0
Q ss_pred cEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCcccccc
Q 021128 260 NLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEVLK 315 (317)
Q Consensus 260 DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~~~~ 315 (317)
|||++++||++||++|++++|+||||+.+.|+++..+++ |+.++|+|+|+|...
T Consensus 1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~~~~--g~~~~i~g~G~p~~~ 54 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPGTQP--GQQLRIKGKGMPKPK 54 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST-ST--T-EEEETTESEEESS
T ss_pred CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCccCC--CcEEeecCCCCCcCC
Confidence 899999999999999999999999999999999999986 799999999998753
No 62
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.01 E-value=5.2e-10 Score=107.17 Aligned_cols=86 Identities=23% Similarity=0.327 Sum_probs=73.9
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
++|.|+++.+.|||+||+.|+++.|... ....+
T Consensus 273 r~G~DL~~~~~Isl~eAl~G~~~~i~~l-----------------------------------------------dG~~i 305 (369)
T PRK14282 273 RSGSDLIYDVTIDYLQAILGTTVEVPLP-----------------------------------------------EGGTT 305 (369)
T ss_pred EecCCEEEEEEeCHHHHhCCCEEEEeCC-----------------------------------------------CCcEE
Confidence 4588999999999999999998887421 23468
Q ss_pred EEEecCCCCCCCEEEEcccCCCCC-CCCCccEEEEEEEeCCCCeeEeCCcEEEE
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKI-DGEPGDLKFRIRTAPHDRFRREGNNLHTT 264 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDL~v~i~v~~h~~F~R~G~DL~~~ 264 (317)
+|.||+|+.+|++|+|+|+|.+.. ++.+|||||++.+..|+.|.+++.+|+.+
T Consensus 306 ~v~Ip~g~~~g~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~ 359 (369)
T PRK14282 306 MLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKE 359 (369)
T ss_pred EEEeCCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999998864 34579999999999999999999887654
No 63
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.98 E-value=6.8e-10 Score=94.97 Aligned_cols=65 Identities=22% Similarity=0.345 Sum_probs=56.8
Q ss_pred CccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHhHhhhCCccccccccc
Q 021128 25 KSYYEVLQVPRG--ASDEQIKRAYRKLALKYHPDKNQGNEE-----ANKRFAEINNAYEVLSDSETRNIYDT 89 (317)
Q Consensus 25 ~~~Y~iLgv~~~--as~~eIk~ayr~la~~~hPd~~~~~~~-----~~~~f~~i~~Ay~~L~d~~~r~~YD~ 89 (317)
.|||++||+++. .+..+++++|++|.+++|||+...... +.+.-..||+||.+|+||-+|+.|=-
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 699999999996 899999999999999999999755432 45567889999999999999999863
No 64
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.95 E-value=8.7e-10 Score=93.08 Aligned_cols=53 Identities=28% Similarity=0.453 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHhHhhhCCccccccccc
Q 021128 37 ASDEQIKRAYRKLALKYHPDKNQGNE-----EANKRFAEINNAYEVLSDSETRNIYDT 89 (317)
Q Consensus 37 as~~eIk~ayr~la~~~hPd~~~~~~-----~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 89 (317)
.+..+|+++||++++++|||+.+... .+...|+.||+||++|+||.+|+.|+-
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL 60 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYML 60 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 46789999999999999999864431 267889999999999999999999995
No 65
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=98.89 E-value=4e-09 Score=79.16 Aligned_cols=72 Identities=24% Similarity=0.467 Sum_probs=54.9
Q ss_pred ceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEEEEEe
Q 021128 136 DVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDI 215 (317)
Q Consensus 136 di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~I 215 (317)
|++.++.|+|.||+.|+++++..- ..+.++|.|
T Consensus 1 DL~~~~~I~l~~al~G~~i~i~~l-----------------------------------------------~g~~~~i~i 33 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISIPTL-----------------------------------------------DGKTIKIKI 33 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEEE-T-----------------------------------------------TS-EEEEEE
T ss_pred CeEEEEEeCHHHHhCCCEEEEECC-----------------------------------------------CCCEEEEec
Confidence 688999999999999999888421 346799999
Q ss_pred cCCCCCCCEEEEcccCCCCCCC--CCccEEEEEEEeCCCCe
Q 021128 216 EKGMQDGQEVVFYEDGEPKIDG--EPGDLKFRIRTAPHDRF 254 (317)
Q Consensus 216 p~G~~~G~~i~~~g~G~~~~~~--~~GDL~v~i~v~~h~~F 254 (317)
|+|+++|+.++++|+|.....+ ..|||+|++++.-...+
T Consensus 34 p~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~l 74 (81)
T PF01556_consen 34 PPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKL 74 (81)
T ss_dssp TST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SST
T ss_pred cCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCC
Confidence 9999999999999999964433 68999999999855433
No 66
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.7e-09 Score=92.28 Aligned_cols=66 Identities=38% Similarity=0.601 Sum_probs=59.5
Q ss_pred CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHhHhhhCCcccccccc
Q 021128 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRNIYD 88 (317)
Q Consensus 23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~YD 88 (317)
-+-|+|+||.|.+..+.++||+.||+|++..|||+|+++ +.|.+.|.-+..||..|-|+.-|..-+
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 467899999999999999999999999999999999998 569999999999999999998554433
No 67
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.88 E-value=2.8e-09 Score=102.02 Aligned_cols=86 Identities=22% Similarity=0.349 Sum_probs=74.2
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
+.|.|+++.+.|||.||+.|+++.|... ...+
T Consensus 267 R~G~DL~~~~~Isl~eAl~G~~~~I~~~------------------------------------------------~g~i 298 (365)
T PRK14290 267 RINDDLYVDQKINFPQAALGGEIEIKLF------------------------------------------------REKY 298 (365)
T ss_pred EecCCEEEEEEeCHHHHhCCCEEEEEcC------------------------------------------------CceE
Confidence 4588999999999999999999887421 2358
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCCC-CCccEEEEEEEeCCCCeeEeCCcEEEEE
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKIDG-EPGDLKFRIRTAPHDRFRREGNNLHTTV 265 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~GDL~v~i~v~~h~~F~R~G~DL~~~~ 265 (317)
+|.||+|+++|++|+++|+|...+++ .+|||||+|+|..++.|++++.+|+.++
T Consensus 299 ~V~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~ 353 (365)
T PRK14290 299 NLKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREF 353 (365)
T ss_pred EEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999999986654 5799999999999999999998887653
No 68
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=3.8e-09 Score=94.02 Aligned_cols=74 Identities=34% Similarity=0.476 Sum_probs=63.1
Q ss_pred hhhccCCCccchhcCCCC---CCCHHHHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHHhHhhhCCccccccccccC
Q 021128 18 ALNVIAGKSYYEVLQVPR---GASDEQIKRAYRKLALKYHPDKNQ--GNEEANKRFAEINNAYEVLSDSETRNIYDTYG 91 (317)
Q Consensus 18 ~~~~~~~~~~Y~iLgv~~---~as~~eIk~ayr~la~~~hPd~~~--~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G 91 (317)
-..-+...|+|.+|||++ -|+..+|.+|+++-..+||||+.. ++....+.|+.|+.||++|+|+.+|.+||..-
T Consensus 36 d~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d 114 (379)
T COG5269 36 DFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND 114 (379)
T ss_pred hhhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence 345667789999999998 588999999999999999999972 22235689999999999999999999999744
No 69
>PRK14285 chaperone protein DnaJ; Provisional
Probab=98.84 E-value=4.6e-09 Score=100.51 Aligned_cols=84 Identities=18% Similarity=0.355 Sum_probs=71.3
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
+++.|++..+.|||.||+.|.++.|..- ....+
T Consensus 263 R~G~dL~~~~~Isl~eAl~G~~~~i~tl-----------------------------------------------dG~~v 295 (365)
T PRK14285 263 RNGKDLYATLPISFTQAALGKEIKIQTI-----------------------------------------------ASKKI 295 (365)
T ss_pred EeccceEEEEecCHHHHhCCCEEEEECC-----------------------------------------------CCCEE
Confidence 4588999999999999999998887431 23468
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCCCC-CccEEEEEEEeCCCCeeEeCCcEE
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKIDGE-PGDLKFRIRTAPHDRFRREGNNLH 262 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~~~-~GDL~v~i~v~~h~~F~R~G~DL~ 262 (317)
+|.||+|+.+|++|+|+|+|.+.++.. .|||||+|++..|+.|.+++..|+
T Consensus 296 ~V~Ip~g~~~g~~irl~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l 347 (365)
T PRK14285 296 KIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLL 347 (365)
T ss_pred EEEeCCCcCCCcEEEECCCCccCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999999866543 599999999999999888776544
No 70
>PRK14294 chaperone protein DnaJ; Provisional
Probab=98.81 E-value=6e-09 Score=99.80 Aligned_cols=86 Identities=24% Similarity=0.373 Sum_probs=72.3
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
++|.|+++.+.|||.||+.|.++.|..- .. .+
T Consensus 261 R~G~DL~~~~~Isl~eAl~G~~~~i~tl-----------------------------------------------dG-~~ 292 (366)
T PRK14294 261 RDGNDVHCKVPISFVQAALGAQIEVPTL-----------------------------------------------EG-ER 292 (366)
T ss_pred ecCCCEEEEEEeCHHHHhCCCeEEEECC-----------------------------------------------CC-cE
Confidence 4689999999999999999998877421 12 35
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCeeEeCCcEEEEE
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRFRREGNNLHTTV 265 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL~~~~ 265 (317)
+|.||+|+.+|++|+|+|+|.+.++ ..+|||||+|+|..|+.|.++..+|+..+
T Consensus 293 ~v~ip~g~~~g~~iri~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~ 347 (366)
T PRK14294 293 ELKIPKGTQPGDIFRFKGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTEF 347 (366)
T ss_pred EEEECCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 8999999999999999999998654 35799999999999999998887776543
No 71
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.74 E-value=1.4e-08 Score=94.39 Aligned_cols=83 Identities=25% Similarity=0.339 Sum_probs=69.7
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
++|.|+++.+.|||.+|+.|+++.|..- .. .+
T Consensus 198 R~G~DL~~~~~Isl~eAl~G~~~~v~tl-----------------------------------------------dG-~~ 229 (291)
T PRK14299 198 LEGDDLYATVDVPAPIAVVGGKVRVMTL-----------------------------------------------DG-PV 229 (291)
T ss_pred EECCEEEEEEecCHHHHhCCCEEEEECC-----------------------------------------------CC-CE
Confidence 4588999999999999999998877421 12 47
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCCCCCccEEEEEEEeCCCCeeEeCCcEE
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNLH 262 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~ 262 (317)
+|.||+|+.+|++++++|+|.+..++..|||+|+++|..++.+..+..+++
T Consensus 230 ~v~ip~~~~~g~~~rl~g~G~p~~~~~~GDL~v~~~V~~P~~l~~~~~~~l 280 (291)
T PRK14299 230 EVTIPPRTQAGRKLRLKGKGWPRGPAGRGDQYAEVRITIPTRPTPEEERLY 280 (291)
T ss_pred EEEeCCCcCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 899999999999999999998754456799999999999998887766553
No 72
>PRK14284 chaperone protein DnaJ; Provisional
Probab=98.74 E-value=1.7e-08 Score=97.56 Aligned_cols=85 Identities=25% Similarity=0.340 Sum_probs=69.9
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
+++.|+++.+.|||+||+.|++++|..- .+...+
T Consensus 275 R~G~DL~~~~~Isl~eAl~G~~~~v~tl----------------------------------------------d~g~~i 308 (391)
T PRK14284 275 RRGDDLILELPIGFVDAALGMKKEIPTL----------------------------------------------LKEGTC 308 (391)
T ss_pred eecCCEEEEEEecHHHHhCCCeEEEeec----------------------------------------------CCCcEE
Confidence 4588999999999999999998888421 113468
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCeeEeCCcEE
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRFRREGNNLH 262 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL~ 262 (317)
+|+||+|+.+|++++|+|+|....+ ..+|||||+|+|..++.+..+...|+
T Consensus 309 ~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll 360 (391)
T PRK14284 309 RLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELL 360 (391)
T ss_pred EEEECCccCCCeEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHH
Confidence 9999999999999999999998654 45799999999999987766655443
No 73
>PRK10767 chaperone protein DnaJ; Provisional
Probab=98.72 E-value=1.8e-08 Score=96.67 Aligned_cols=86 Identities=21% Similarity=0.361 Sum_probs=72.9
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
+.|.|++..+.|+|.||+.|+++.|..- .. .+
T Consensus 259 R~G~DL~~~~~Isl~eAl~G~~~~i~~l-----------------------------------------------dG-~i 290 (371)
T PRK10767 259 RDGNDLYCEVPISFTTAALGGEIEVPTL-----------------------------------------------DG-RV 290 (371)
T ss_pred EecCCEEEEEEeCHHHHhCCCeEEEecC-----------------------------------------------CC-cE
Confidence 4588999999999999999998877321 12 58
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCeeEeCCcEEEEE
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRFRREGNNLHTTV 265 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL~~~~ 265 (317)
+|.||+|+.+|++++++|+|...++ +..|||||+++|..++.|.+++.+|+.++
T Consensus 291 ~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l 345 (371)
T PRK10767 291 KLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEF 345 (371)
T ss_pred EEEeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999999999987653 45799999999999999999988876654
No 74
>PRK14300 chaperone protein DnaJ; Provisional
Probab=98.71 E-value=5.7e-08 Score=93.25 Aligned_cols=77 Identities=23% Similarity=0.360 Sum_probs=65.6
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
++|.|+++.+.|+|.+|+.|.++.|... ....+
T Consensus 262 R~G~Dl~~~~~Isl~~Al~G~~~~i~~l-----------------------------------------------dg~~i 294 (372)
T PRK14300 262 VDGANLHCKLPISFVNAALGGEIEVPVI-----------------------------------------------EGGKV 294 (372)
T ss_pred EecCCEEEEEecCHHHHhCCCEEEEecC-----------------------------------------------CCCEE
Confidence 4588999999999999999998888431 23469
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCee
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRFR 255 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F~ 255 (317)
+|.||+|+++|++|+++|+|.+.++ ..+|||||+++|..+..+.
T Consensus 295 ~v~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~v~~P~~ls 339 (372)
T PRK14300 295 NLTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLTHIHVEVPKNLS 339 (372)
T ss_pred EEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCC
Confidence 9999999999999999999998654 4579999999999987644
No 75
>PRK14298 chaperone protein DnaJ; Provisional
Probab=98.70 E-value=2.1e-08 Score=96.40 Aligned_cols=86 Identities=21% Similarity=0.340 Sum_probs=72.3
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
++|.|+++.+.|+|.||+.|+++.|..- ..+ +
T Consensus 262 R~G~DL~~~~~Isl~eAl~G~~~~i~tl-----------------------------------------------dG~-i 293 (377)
T PRK14298 262 RVGDDIISEIPISFTQAALGADIMVPTL-----------------------------------------------YGK-V 293 (377)
T ss_pred EEcCcEEEEEEeCHHHHhCCCeEEEecC-----------------------------------------------CCC-E
Confidence 4588999999999999999998877321 122 7
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCeeEeCCcEEEEE
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRFRREGNNLHTTV 265 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL~~~~ 265 (317)
+|.||+|+.+|++++++|+|....+ +..|||||+++|..++.+.+++.+|+.++
T Consensus 294 ~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l 348 (377)
T PRK14298 294 KMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREF 348 (377)
T ss_pred EEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 8999999999999999999987554 35799999999999999999888776554
No 76
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=98.66 E-value=3.8e-08 Score=93.91 Aligned_cols=82 Identities=24% Similarity=0.478 Sum_probs=68.4
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
+++.|++..+.|||+||+.|+++.|..- .. .+
T Consensus 264 r~g~DL~~~~~isl~eAl~G~~~~i~~l-----------------------------------------------dG-~i 295 (354)
T TIGR02349 264 RDGNDLYIEVPISFTQAILGGEIEVPTL-----------------------------------------------DG-DV 295 (354)
T ss_pred EecCCEEEEEEeCHHHHhCCCeEEEecC-----------------------------------------------Cc-eE
Confidence 4588999999999999999998777321 12 58
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCCC-CCccEEEEEEEeCCCCeeEeCCcE
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKIDG-EPGDLKFRIRTAPHDRFRREGNNL 261 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~GDL~v~i~v~~h~~F~R~G~DL 261 (317)
+|.||+|+.+|++++++|+|...+++ .+|||||+++|..++.+.++..++
T Consensus 296 ~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~ 346 (354)
T TIGR02349 296 KLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKEL 346 (354)
T ss_pred EEEECCcccCCcEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 99999999999999999999986544 579999999999998877665443
No 77
>PRK14279 chaperone protein DnaJ; Provisional
Probab=98.66 E-value=1e-07 Score=92.02 Aligned_cols=75 Identities=28% Similarity=0.411 Sum_probs=63.7
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
++|.|+++.+.|||.||+.|.++.|..- ...+
T Consensus 290 R~G~DL~~~~~Isl~eAl~G~~~~v~~l------------------------------------------------dg~i 321 (392)
T PRK14279 290 RDGDDLTVTVPVSFTELALGSTLSVPTL------------------------------------------------DGPV 321 (392)
T ss_pred eecCcEEEEEEccHHHHcCCceEEEEcC------------------------------------------------CceE
Confidence 4588999999999999999998777321 2237
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCCCCCccEEEEEEEeCCCCe
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRF 254 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDL~v~i~v~~h~~F 254 (317)
+|+||+|+++|++|+++|+|.+..++..|||||+++|.-++..
T Consensus 322 ~v~Ip~g~~~g~~iri~g~G~p~~~~~~GDL~I~~~v~~P~~L 364 (392)
T PRK14279 322 GVKVPAGTADGRILRVRGRGVPKRSGGAGDLLVTVKVAVPPNL 364 (392)
T ss_pred EEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCC
Confidence 8999999999999999999998766678999999999977643
No 78
>PRK14295 chaperone protein DnaJ; Provisional
Probab=98.64 E-value=9.6e-08 Score=92.16 Aligned_cols=75 Identities=25% Similarity=0.379 Sum_probs=63.8
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
++|.|+++++.|||.||+.|++++|..- ..+.+
T Consensus 283 R~G~DL~~~~~Isl~eAl~G~~~~I~tl-----------------------------------------------dG~~~ 315 (389)
T PRK14295 283 RSGDNLTVTVPVTFPEAALGAEVRVPTL-----------------------------------------------GGPPV 315 (389)
T ss_pred EecCCEEEEEeecHHHHhCCCeEEEECC-----------------------------------------------CCCEE
Confidence 4588999999999999999998877321 23468
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCCCCCccEEEEEEEeCCCC
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDR 253 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDL~v~i~v~~h~~ 253 (317)
+|.||+|+++|++|+|+|+|.+..++..|||||++.|.-.+.
T Consensus 316 ~v~ip~g~~~g~~iri~G~G~p~~~~~~GDL~i~~~v~~P~~ 357 (389)
T PRK14295 316 TVKLPPGTPNGRVLRVRGKGAVRKDGTRGDLLVTVEVAVPKD 357 (389)
T ss_pred EEEECCccCCCcEEEECCCCcCCCCCCCCCEEEEEEEECCCC
Confidence 999999999999999999999866666899999999996654
No 79
>PRK14301 chaperone protein DnaJ; Provisional
Probab=98.64 E-value=4.8e-08 Score=93.79 Aligned_cols=82 Identities=23% Similarity=0.414 Sum_probs=67.3
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
++|.|+++.+.|+|.||+.|.++.|..- .. .+
T Consensus 261 r~G~DL~~~~~Isl~eAl~G~~~~v~tl-----------------------------------------------dG-~i 292 (373)
T PRK14301 261 RQGQDLVVTQEISFVQAALGDRIEVPTL-----------------------------------------------DD-PV 292 (373)
T ss_pred eecCcEEEEEEecHHHHhCCCeEEEecC-----------------------------------------------Cc-cE
Confidence 4589999999999999999998877321 12 28
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCeeEeCCcE
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRFRREGNNL 261 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL 261 (317)
+|.||+|+++|++++|+|+|.+.++ +..|||||+++|..++.+..+..++
T Consensus 293 ~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~ 343 (373)
T PRK14301 293 TLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEEL 343 (373)
T ss_pred EEEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 8999999999999999999998654 3479999999999998766554333
No 80
>PRK14287 chaperone protein DnaJ; Provisional
Probab=98.63 E-value=4.3e-08 Score=94.05 Aligned_cols=83 Identities=23% Similarity=0.414 Sum_probs=68.6
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
++|.|++..+.|||.||+.|+++.|..- .. .+
T Consensus 259 R~G~DL~~~~~Isl~eAl~G~~~~i~~l-----------------------------------------------dg-~i 290 (371)
T PRK14287 259 RDGDDIYCEMPLTFPQVALGDEIEVPTL-----------------------------------------------NG-KV 290 (371)
T ss_pred EecCCeEEEEeccHHHHhCCCEEEEEcC-----------------------------------------------CC-CE
Confidence 4689999999999999999998877421 12 37
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCeeEeCCcEE
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRFRREGNNLH 262 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL~ 262 (317)
+|.||+|+.+|++++|+|+|....+ +..|||||+|+|..++.+.++...|+
T Consensus 291 ~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll 342 (371)
T PRK14287 291 KLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELM 342 (371)
T ss_pred EEEECCCccCCcEEEEcCCCccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHH
Confidence 8999999999999999999997554 45799999999999988876654443
No 81
>PRK14288 chaperone protein DnaJ; Provisional
Probab=98.61 E-value=1.6e-07 Score=90.14 Aligned_cols=80 Identities=19% Similarity=0.303 Sum_probs=66.7
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
++|.|+++.+.|||.||+.|+++.|..- ....+
T Consensus 255 R~G~DL~~~~~Isl~eAllG~~i~v~tL-----------------------------------------------dG~~l 287 (369)
T PRK14288 255 REGCDLFIEAPVFFTTIALGHTIKVPSL-----------------------------------------------KGDEL 287 (369)
T ss_pred EeCCEEEEEEecCHHHHhcCCEEEeecC-----------------------------------------------CCCEE
Confidence 4589999999999999999998877321 23458
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCCC-CCccEEEEEEEeCCCCeeEeC
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKIDG-EPGDLKFRIRTAPHDRFRREG 258 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~GDL~v~i~v~~h~~F~R~G 258 (317)
+|.||+|+++|++++++|+|.+.++. ..|||||+++|.-++.+..+.
T Consensus 288 ~i~i~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q 335 (369)
T PRK14288 288 ELKIPRNARDRQTFAFRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQ 335 (369)
T ss_pred EEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHH
Confidence 99999999999999999999986654 359999999999998765443
No 82
>PRK14291 chaperone protein DnaJ; Provisional
Probab=98.61 E-value=1.4e-07 Score=90.83 Aligned_cols=74 Identities=23% Similarity=0.424 Sum_probs=62.5
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
+.+.|+++.+.|||+||+.|+++.|..- ....+
T Consensus 272 r~G~DL~~~~~Isl~eAl~G~~~~i~~l-----------------------------------------------dG~~l 304 (382)
T PRK14291 272 RRGDNLYLDVNITVAEAVLGTELEVPLL-----------------------------------------------DGKKE 304 (382)
T ss_pred eecCCeEEEEEeeHHHHhCCCEEEEecC-----------------------------------------------CCCEE
Confidence 4588999999999999999999888431 23468
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCC
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHD 252 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~ 252 (317)
+|.||+|+++|++|+|+|+|...++ ..+|||||+++|.-..
T Consensus 305 ~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~~~V~~P~ 346 (382)
T PRK14291 305 KVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHIDVPK 346 (382)
T ss_pred EEEECCccCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCC
Confidence 9999999999999999999998654 3579999999998654
No 83
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.57 E-value=2.3e-07 Score=86.81 Aligned_cols=75 Identities=17% Similarity=0.178 Sum_probs=63.5
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
+.|.|+++++.|||.+|+.|+++.|... ...+
T Consensus 206 r~g~DL~~~~~Isl~~al~G~~~~i~~~------------------------------------------------~g~v 237 (306)
T PRK10266 206 IVGQDLEIVVPLAPWEAALGAKVTVPTL------------------------------------------------KESI 237 (306)
T ss_pred EeCCceEEEEecCHHHHhCCCEEEeeCC------------------------------------------------CccE
Confidence 3588999999999999999999888421 1237
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCCCCCccEEEEEEEeCCCCee
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFR 255 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDL~v~i~v~~h~~F~ 255 (317)
+|+||+|+.+|++++++|+|...++ ..|||+|+++|..++.+.
T Consensus 238 ~v~ip~g~~~g~~~ri~g~G~p~~~-~~GdL~v~~~v~~P~~l~ 280 (306)
T PRK10266 238 LLTIPPGSQAGQRLRVKGKGLVSKK-QTGDLYAVLKIVMPPKPD 280 (306)
T ss_pred EEEeCCCcCCCCEEEECCCCCCCCC-CCCCEEEEEEEECCCCCC
Confidence 9999999999999999999987554 479999999999997653
No 84
>PRK14293 chaperone protein DnaJ; Provisional
Probab=98.56 E-value=8e-08 Score=92.34 Aligned_cols=86 Identities=20% Similarity=0.341 Sum_probs=71.5
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
+++.|+..+++|||.||+.|.++.|... .. .+
T Consensus 264 r~g~DL~~~~~Isl~eAl~G~~~~i~~l-----------------------------------------------dG-~~ 295 (374)
T PRK14293 264 RDGINILSEIKISYLQAILGDTLEVDTV-----------------------------------------------DG-PV 295 (374)
T ss_pred hhhhceEEEeccCHHHHhCCCEEEecCC-----------------------------------------------CC-CE
Confidence 4578999999999999999998887421 12 26
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCCC--CCccEEEEEEEeCCCCeeEeCCcEEEEE
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKIDG--EPGDLKFRIRTAPHDRFRREGNNLHTTV 265 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~~--~~GDL~v~i~v~~h~~F~R~G~DL~~~~ 265 (317)
+|.||+|+.+|++++++|+|...+++ ..|||||+++|..++.+.+++.+|+-++
T Consensus 296 ~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l 351 (374)
T PRK14293 296 ELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKL 351 (374)
T ss_pred EEEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999999876543 4799999999999998888887766543
No 85
>PRK14276 chaperone protein DnaJ; Provisional
Probab=98.51 E-value=3.8e-07 Score=87.80 Aligned_cols=75 Identities=21% Similarity=0.390 Sum_probs=62.9
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
++|.|+++.+.|||.||+.|.+++|... .. .+
T Consensus 267 R~G~DL~~~~~Isl~eAl~G~~~~v~tl-----------------------------------------------dg-~i 298 (380)
T PRK14276 267 RDGSTIYYTLPISFVQAALGDTVEVPTV-----------------------------------------------HG-DV 298 (380)
T ss_pred eecceEEEEEecCHHHHhCCCeEEEEcC-----------------------------------------------CC-cE
Confidence 4588999999999999999998887421 12 37
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCe
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRF 254 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F 254 (317)
+|.||+|+++|++++++|+|.+.++ ..+|||||+|+|.-.+.+
T Consensus 299 ~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l 342 (380)
T PRK14276 299 ELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKL 342 (380)
T ss_pred EEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCC
Confidence 8999999999999999999998654 457999999999977643
No 86
>PRK14286 chaperone protein DnaJ; Provisional
Probab=98.49 E-value=2e-07 Score=89.45 Aligned_cols=80 Identities=20% Similarity=0.333 Sum_probs=65.4
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
++|.|+++.+.|+|.||+.|+++.|..- ....+
T Consensus 267 R~G~DL~~~~~Isl~eAl~G~~~~i~tl-----------------------------------------------dG~~i 299 (372)
T PRK14286 267 RQGNDLILVRKISLAQAILGAEIEVPTI-----------------------------------------------DGKKA 299 (372)
T ss_pred EecCCEEEEEEECHHHHhCCCEEEEeCC-----------------------------------------------CCCEE
Confidence 4588999999999999999998877321 23468
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCeeEeC
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRFRREG 258 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F~R~G 258 (317)
+|+||+|+++|++++++|+|....+ ...|||||+|+|.-++.+..+.
T Consensus 300 ~v~ip~g~~~g~~~ri~G~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~q 347 (372)
T PRK14286 300 KMKIPEGTESGQVFRLKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQ 347 (372)
T ss_pred EEEeCCccCCCcEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHH
Confidence 9999999999999999999987554 3469999999999776544433
No 87
>PRK14292 chaperone protein DnaJ; Provisional
Probab=98.46 E-value=5.3e-07 Score=86.59 Aligned_cols=80 Identities=20% Similarity=0.343 Sum_probs=65.5
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
+.+.|+...+.|+|.||+.|+++.|..- ... .
T Consensus 259 r~g~dL~~~~~isl~eAl~G~~~~i~tl-----------------------------------------------dG~-~ 290 (371)
T PRK14292 259 REQEHLIYEARIGFAKAALGGQITVPTL-----------------------------------------------DGP-Q 290 (371)
T ss_pred cchhceeEEeccCHHHHhCCCeEEEECC-----------------------------------------------CCC-E
Confidence 4588999999999999999998888421 112 3
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCeeEeCC
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRFRREGN 259 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F~R~G~ 259 (317)
+|.||+|+.+|++++|+|+|...++ ..+|||||++.|..++.+..+-.
T Consensus 291 ~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~ 339 (371)
T PRK14292 291 VIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAR 339 (371)
T ss_pred EEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHH
Confidence 6999999999999999999998654 45799999999999987665443
No 88
>PRK14278 chaperone protein DnaJ; Provisional
Probab=98.45 E-value=6.9e-07 Score=85.98 Aligned_cols=76 Identities=22% Similarity=0.341 Sum_probs=62.8
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
++|.|+++.+.|+|.||+.|+++.|..- ....+
T Consensus 260 R~G~DL~~~~~Isl~eAl~G~~~~i~tl-----------------------------------------------d~~~i 292 (378)
T PRK14278 260 RDGDDLHCTVSVPMVDAALGTTVTVEAI-----------------------------------------------LDGPS 292 (378)
T ss_pred EcCCCEEEEEecCHHHHhcCCeEEEecC-----------------------------------------------CCCeE
Confidence 4588999999999999999998877321 13468
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCe
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRF 254 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F 254 (317)
+|.||+|+++|++++++|+|.+..+ +..|||||+++|.-...+
T Consensus 293 ~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~L 336 (378)
T PRK14278 293 EITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRL 336 (378)
T ss_pred EEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCC
Confidence 9999999999999999999997643 457999999999866543
No 89
>PRK14281 chaperone protein DnaJ; Provisional
Probab=98.45 E-value=6e-07 Score=86.91 Aligned_cols=74 Identities=26% Similarity=0.338 Sum_probs=61.7
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
++|.|+++.+.|||.||+.|.++.|..- .. .+
T Consensus 283 R~G~DL~~~~~Isl~eAl~G~~~~i~tl-----------------------------------------------dg-~i 314 (397)
T PRK14281 283 RNGDDVIYNLAVSYPDLVLGTKVEVPTL-----------------------------------------------DG-AV 314 (397)
T ss_pred EecCCEEEEEEecHHHHhcCCeEEeecC-----------------------------------------------Cc-cE
Confidence 4588999999999999999998877421 12 37
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCC
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDR 253 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~ 253 (317)
+|.||+|+++|++++|+|+|.+..+ +..|||||+++|.-.+.
T Consensus 315 ~v~ip~g~~~G~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~ 357 (397)
T PRK14281 315 KLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKE 357 (397)
T ss_pred EEEeCCccCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEEcCCC
Confidence 8999999999999999999987544 35799999999986654
No 90
>PRK14280 chaperone protein DnaJ; Provisional
Probab=98.44 E-value=9e-07 Score=85.12 Aligned_cols=75 Identities=24% Similarity=0.392 Sum_probs=62.3
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
++|.|+++.+.|||.||+.|+++.|..- .. .+
T Consensus 264 R~G~DL~~~~~Isl~eAl~G~~~~i~tl-----------------------------------------------dg-~i 295 (376)
T PRK14280 264 RDGDDIYCEMPLTFAQAALGDEIEVPTL-----------------------------------------------HG-KV 295 (376)
T ss_pred EecCCEEEEEecCHHHHhCCCEEEEecC-----------------------------------------------Cc-eE
Confidence 4589999999999999999998877321 12 37
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCe
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRF 254 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F 254 (317)
+|.||+|+.+|++++|+|+|....+ ...|||||+++|...+.+
T Consensus 296 ~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~L 339 (376)
T PRK14280 296 KLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKL 339 (376)
T ss_pred EEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCC
Confidence 8999999999999999999987543 357999999999977543
No 91
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.7e-07 Score=81.87 Aligned_cols=76 Identities=24% Similarity=0.436 Sum_probs=57.9
Q ss_pred hhhHHHHHHHHHH----Hhh-hccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHh-h
Q 021128 4 RRARLLFLLCALC----YAL-NVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYE-V 77 (317)
Q Consensus 4 ~~~~~~~~~~~~~----~~~-~~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~-~ 77 (317)
||..||-++.+.- .+. +-..-..||.+|||...|+.+|++.||..||+++|||...+.. ..+.|.+|.+||. |
T Consensus 21 ~rvkmlpyfgiirnrll~~~kske~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~a-daa~f~qideafrkv 99 (342)
T KOG0568|consen 21 NRVKMLPYFGIIRNRLLHLHKSKEKIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEA-DAARFIQIDEAFRKV 99 (342)
T ss_pred chhcccchhhhHHHHHHHHhhhHHHHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccc-cHHHHHHHHHHHHHH
Confidence 5555655555322 111 1222357999999999999999999999999999999987655 5688999999998 7
Q ss_pred hCC
Q 021128 78 LSD 80 (317)
Q Consensus 78 L~d 80 (317)
|+.
T Consensus 100 lq~ 102 (342)
T KOG0568|consen 100 LQE 102 (342)
T ss_pred HHH
Confidence 763
No 92
>PRK14297 chaperone protein DnaJ; Provisional
Probab=98.41 E-value=8.4e-07 Score=85.48 Aligned_cols=75 Identities=19% Similarity=0.324 Sum_probs=61.9
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
++|.|+++.+.|||.||+.|+++.|... .. .+
T Consensus 269 R~G~DL~~~~~Isl~eAl~G~~~~i~~l-----------------------------------------------dg-~~ 300 (380)
T PRK14297 269 RKGFDIYIDKHISFAKAALGTEIKVPTV-----------------------------------------------DG-EV 300 (380)
T ss_pred EeCCCEEEEEEeCHHHHhCCCcEEEEcC-----------------------------------------------CC-cE
Confidence 4588999999999999999998877421 12 37
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCe
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRF 254 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F 254 (317)
+|.||+|+.+|++++++|+|....+ +..|||||+|+|.=.+.+
T Consensus 301 ~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~l 344 (380)
T PRK14297 301 KYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKL 344 (380)
T ss_pred EEEECCCcCCCCEEEEcCCCcCCCCCCCCCcEEEEEEEEcCCCC
Confidence 8999999999999999999987544 357999999999966543
No 93
>PRK14289 chaperone protein DnaJ; Provisional
Probab=98.35 E-value=1.5e-06 Score=83.94 Aligned_cols=73 Identities=25% Similarity=0.377 Sum_probs=61.1
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
+.+.|+++.+.|+|.||+.|+++.|... .. .+
T Consensus 275 r~g~DL~~~~~Isl~eAl~G~~~~i~~l-----------------------------------------------dg-~i 306 (386)
T PRK14289 275 RDENDLIYNLLLSVPTAALGGAVEVPTI-----------------------------------------------DG-KA 306 (386)
T ss_pred ccccceeEEeccCHHHHhCCCeEEeecC-----------------------------------------------Cc-eE
Confidence 4578999999999999999998888431 12 37
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCC
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHD 252 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~ 252 (317)
+|.||+|+++|++++++|+|...++ +..|||||+|+|.=..
T Consensus 307 ~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~ 348 (386)
T PRK14289 307 KVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVNVSVYIPE 348 (386)
T ss_pred EEEECCccCCCcEEEECCCCcCCCCCCCCCcEEEEEEEEeCC
Confidence 9999999999999999999998654 4579999999998554
No 94
>PRK14283 chaperone protein DnaJ; Provisional
Probab=98.34 E-value=2e-06 Score=82.84 Aligned_cols=74 Identities=19% Similarity=0.346 Sum_probs=61.0
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
+.|.|++..+.|+|+||+.|.++.|..- .. .+
T Consensus 267 r~G~DL~~~~~Isl~eAl~G~~~~i~tl-----------------------------------------------dG-~i 298 (378)
T PRK14283 267 REGANLYYEKPISFVQAALGDTVDVPTI-----------------------------------------------DG-PV 298 (378)
T ss_pred EecCCEEEEEecCHHHHhcCCeEEEEcC-----------------------------------------------Cc-eE
Confidence 4588999999999999999998877421 12 58
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCC
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDR 253 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~ 253 (317)
+|.||+|+.+|++++|+|+|....+ ...|||||++++.-.+.
T Consensus 299 ~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GdL~v~~~v~~P~~ 341 (378)
T PRK14283 299 ELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVKVKVVVPKK 341 (378)
T ss_pred EEEeCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCC
Confidence 8999999999999999999987543 35799999999985543
No 95
>PRK14277 chaperone protein DnaJ; Provisional
Probab=98.32 E-value=2.1e-06 Score=82.85 Aligned_cols=74 Identities=23% Similarity=0.402 Sum_probs=60.7
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
+.|.|+++.+.|||.||+.|+++.|..- ... +
T Consensus 276 R~G~DL~~~~~Isl~eAl~G~~~~i~tl-----------------------------------------------dG~-~ 307 (386)
T PRK14277 276 REGYNVYLEMPITFTDAALGGEIEIPTL-----------------------------------------------DGK-V 307 (386)
T ss_pred EecCCEEEEEEcCHHHHhCCCEEEEEcC-----------------------------------------------CCC-E
Confidence 4588999999999999999998877321 223 7
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCC
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDR 253 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~ 253 (317)
+|.||+|+.+|++++++|+|....+ ...|||||+++|.=.+.
T Consensus 308 ~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~~ 350 (386)
T PRK14277 308 KFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVKVYIEVPKK 350 (386)
T ss_pred EEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCC
Confidence 8999999999999999999987543 34699999999985543
No 96
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=98.30 E-value=2.1e-06 Score=83.59 Aligned_cols=73 Identities=18% Similarity=0.260 Sum_probs=61.0
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
+.|.|+++++.|||.||+.|.++.|..- ....+
T Consensus 271 R~G~DL~~~~~Isl~eAllG~~i~I~tL-----------------------------------------------dG~~l 303 (421)
T PTZ00037 271 REGGDLFITKKISLYEALTGFVFYITHL-----------------------------------------------DGRKL 303 (421)
T ss_pred EeCCeEEEEEeCCHHHHhcCCEEEeeCC-----------------------------------------------CCCeE
Confidence 4589999999999999999998777321 23458
Q ss_pred EEEecCC--CCCCCEEEEcccCCCCCC--CCCccEEEEEEEeCC
Q 021128 212 TVDIEKG--MQDGQEVVFYEDGEPKID--GEPGDLKFRIRTAPH 251 (317)
Q Consensus 212 ~V~Ip~G--~~~G~~i~~~g~G~~~~~--~~~GDL~v~i~v~~h 251 (317)
+|+||+| +++|++++|+|+|.+..+ +..|||||++.|.-.
T Consensus 304 ~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P 347 (421)
T PTZ00037 304 LVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFP 347 (421)
T ss_pred EEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcC
Confidence 8999999 999999999999987543 356999999999865
No 97
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=2.8e-06 Score=80.33 Aligned_cols=78 Identities=28% Similarity=0.509 Sum_probs=64.4
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
+.+.|+..+++|+|.+|+.|.++.|..- ... +
T Consensus 261 R~g~dL~~~~~Is~~~AalG~~i~vptl-----------------------------------------------~g~-~ 292 (371)
T COG0484 261 RDGDDLYCEVPISFTEAALGGEIEVPTL-----------------------------------------------DGR-V 292 (371)
T ss_pred ECCCceEeccccCHHHHhcCCEEEEEec-----------------------------------------------CCC-E
Confidence 4578999999999999999988887421 122 9
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCeeEe
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRFRRE 257 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F~R~ 257 (317)
+|.||+|+..|++++|+|+|..... ...|||||.|.|.-.+.+...
T Consensus 293 ~l~ip~Gtq~G~~~rl~gkG~p~~~~~~~GDl~v~v~v~~P~~ls~~ 339 (371)
T COG0484 293 KLKIPAGTQTGEVFRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDE 339 (371)
T ss_pred EEecCCCCccCcEEEEcCCCccccCCCCcCCEEEEEEEEcCCCCCHH
Confidence 9999999999999999999998644 446999999999987764433
No 98
>PRK14296 chaperone protein DnaJ; Provisional
Probab=98.28 E-value=2.6e-06 Score=81.79 Aligned_cols=73 Identities=14% Similarity=0.334 Sum_probs=60.1
Q ss_pred CCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEEEE
Q 021128 134 GDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTV 213 (317)
Q Consensus 134 g~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V 213 (317)
|.|++++++|||.||+.|.++.|..- ... ++|
T Consensus 273 G~DL~~~~~Isl~eAllG~~~~i~tl-----------------------------------------------dG~-~~v 304 (372)
T PRK14296 273 NNDILMTYNISYLDAILGNEIIIKTL-----------------------------------------------DGD-IKY 304 (372)
T ss_pred CCcEEEEEecCHHHHhCCCEEEeeCC-----------------------------------------------CCC-EEE
Confidence 68999999999999999998877421 233 789
Q ss_pred EecCCCCCCCEEEEcccCCCCC--CCCCccEEEEEEEeCCCCe
Q 021128 214 DIEKGMQDGQEVVFYEDGEPKI--DGEPGDLKFRIRTAPHDRF 254 (317)
Q Consensus 214 ~Ip~G~~~G~~i~~~g~G~~~~--~~~~GDL~v~i~v~~h~~F 254 (317)
.||+|+++|++++|+|+|.+.. .+..|||||+++|.-.+..
T Consensus 305 ~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~L 347 (372)
T PRK14296 305 KLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNL 347 (372)
T ss_pred EECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCC
Confidence 9999999999999999998632 2356999999999966543
No 99
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=7.2e-07 Score=92.05 Aligned_cols=57 Identities=40% Similarity=0.602 Sum_probs=47.4
Q ss_pred hccCCCccchhcCCCCC---C-CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhC
Q 021128 20 NVIAGKSYYEVLQVPRG---A-SDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLS 79 (317)
Q Consensus 20 ~~~~~~~~Y~iLgv~~~---a-s~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~ 79 (317)
.+++..+-|+||.|+-+ . ..+.||++|++||.+|||||||.- .++|..+++|||.|+
T Consensus 1276 ~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEG---RemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1276 ATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEG---REMFERVNKAYELLS 1336 (2235)
T ss_pred CccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchH---HHHHHHHHHHHHHHH
Confidence 34455678999999863 2 347899999999999999999754 489999999999998
No 100
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1.6e-06 Score=66.87 Aligned_cols=55 Identities=27% Similarity=0.401 Sum_probs=46.4
Q ss_pred CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCcc
Q 021128 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE 82 (317)
Q Consensus 24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~ 82 (317)
.+.--.||||+++++.+.||+|+|++....|||+..++--| ..||||+++|....
T Consensus 55 r~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlA----sKINEAKdlLe~~~ 109 (112)
T KOG0723|consen 55 RREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLA----SKINEAKDLLEGTS 109 (112)
T ss_pred hHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHH----HHHHHHHHHHhccc
Confidence 34455699999999999999999999999999999876433 45999999997543
No 101
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.21 E-value=4.1e-06 Score=84.96 Aligned_cols=71 Identities=51% Similarity=0.910 Sum_probs=66.2
Q ss_pred CccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccc
Q 021128 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLK 96 (317)
Q Consensus 25 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~ 96 (317)
+|||++|||+++|+.++||+|||+||++||||++++ ..+.++|++|++||++|+||.+|+.||+||..+..
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d 72 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD 72 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence 699999999999999999999999999999999986 45889999999999999999999999999986543
No 102
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=97.17 E-value=0.00042 Score=59.86 Aligned_cols=47 Identities=19% Similarity=0.367 Sum_probs=39.6
Q ss_pred cccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEc
Q 021128 170 RRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFY 228 (317)
Q Consensus 170 ~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~ 228 (317)
+.|+|+|.++.. .++|+.|+|.|.+..++...+.+ .|+.+|++|++.
T Consensus 103 ~~C~G~G~~i~~-----------~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~ 149 (186)
T TIGR02642 103 PRCRGTGLIQRR-----------QRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK 149 (186)
T ss_pred CCCCCeeEEecC-----------CCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence 357788876532 25799999999999999999999 999999999874
No 103
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0004 Score=57.48 Aligned_cols=68 Identities=24% Similarity=0.471 Sum_probs=53.9
Q ss_pred ccCCCccchhcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHhHhhhCCcccccccc
Q 021128 21 VIAGKSYYEVLQVPR--GASDEQIKRAYRKLALKYHPDKNQGN-----EEANKRFAEINNAYEVLSDSETRNIYD 88 (317)
Q Consensus 21 ~~~~~~~Y~iLgv~~--~as~~eIk~ayr~la~~~hPd~~~~~-----~~~~~~f~~i~~Ay~~L~d~~~r~~YD 88 (317)
+...++||.++|... ...+..+..-|.-..+++|||+.... ..|.+...++++||..|.||-+|+.|=
T Consensus 4 ~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yi 78 (168)
T KOG3192|consen 4 MGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYL 78 (168)
T ss_pred cchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345678999997554 45566666689999999999994322 247888999999999999999999986
No 104
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0026 Score=54.65 Aligned_cols=55 Identities=38% Similarity=0.578 Sum_probs=47.4
Q ss_pred CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHhHhhh
Q 021128 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-------EEANKRFAEINNAYEVL 78 (317)
Q Consensus 24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~-------~~~~~~f~~i~~Ay~~L 78 (317)
..+.|.+|++...++..+|+++|+++....|||+-... ..+.+++++|++||+.+
T Consensus 112 ~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 112 REDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred chhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 37899999999999999999999999999999984321 24789999999999854
No 105
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.015 Score=54.72 Aligned_cols=46 Identities=17% Similarity=0.347 Sum_probs=39.6
Q ss_pred eCEEEEEEecCC--CCCCCEEEEcccCCCCCCCCCccEEEEEEEeCCC
Q 021128 207 EGYFVTVDIEKG--MQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHD 252 (317)
Q Consensus 207 ~~~~~~V~Ip~G--~~~G~~i~~~g~G~~~~~~~~GDL~v~i~v~~h~ 252 (317)
+...+++.++|| +.+|++++++|+|....+...|||||.+.|+=.+
T Consensus 277 dGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~~g~lyi~~~v~fp~ 324 (337)
T KOG0712|consen 277 DGRLLKLSSKPGEVISPGDTKRVEGEGMPIFRNPKGDLYIKFEVKFPK 324 (337)
T ss_pred CCceEEEecCCCceeChhHEEeecCCCcccccCCCCcEEEEEEEEcCC
Confidence 356789999999 9999999999999986655599999999998665
No 106
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.0064 Score=52.21 Aligned_cols=64 Identities=33% Similarity=0.480 Sum_probs=48.9
Q ss_pred ccchhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHhHhhhCCccccccccc
Q 021128 26 SYYEVLQVPRGAS--DEQIKRAYRKLALKYHPDKNQGNEE-----ANKRFAEINNAYEVLSDSETRNIYDT 89 (317)
Q Consensus 26 ~~Y~iLgv~~~as--~~eIk~ayr~la~~~hPd~~~~~~~-----~~~~f~~i~~Ay~~L~d~~~r~~YD~ 89 (317)
+|....+..+.+. .+.++..|+.+++.+|||+...... +.+.+..++.||.+|.||-+|+.|=.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3444555555443 3458899999999999999865542 34678899999999999999998863
No 107
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=95.43 E-value=0.023 Score=40.62 Aligned_cols=36 Identities=28% Similarity=0.463 Sum_probs=23.6
Q ss_pred cccCccceEEEEEecCceeEEEeeeccccCCCceEEe
Q 021128 170 RRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYER 206 (317)
Q Consensus 170 ~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~ 206 (317)
+.|+|.|.+...+..++++.+ ....|+.|+|.|.+.
T Consensus 19 ~~C~G~G~~~~~~~~~~~~~~-~~~~C~~C~G~G~~i 54 (66)
T PF00684_consen 19 PQCNGSGQVTRRQQTPGGVFQ-MQQTCPKCGGTGKII 54 (66)
T ss_dssp TTSSSSSEEEEEEESSSTTEE-EEEE-TTTSSSSEE-
T ss_pred cCCCCeeEEEEEEeCCCeEEE-EEEECCCCcceeeEE
Confidence 468999988766555544433 345799999988764
No 108
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=94.27 E-value=0.075 Score=52.42 Aligned_cols=51 Identities=31% Similarity=0.450 Sum_probs=38.0
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---h----HHHHHHHHHHHhHhhhC
Q 021128 29 EVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN---E----EANKRFAEINNAYEVLS 79 (317)
Q Consensus 29 ~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~---~----~~~~~f~~i~~Ay~~L~ 79 (317)
+=..+..=.+.+++||||||..+..||||-+.. . .|++.|..+++|+....
T Consensus 392 qpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~ 449 (453)
T KOG0431|consen 392 QPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFN 449 (453)
T ss_pred ccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhh
Confidence 334455556999999999999999999997644 1 26777777777776543
No 109
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=93.43 E-value=0.17 Score=41.11 Aligned_cols=53 Identities=23% Similarity=0.248 Sum_probs=37.2
Q ss_pred ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCcc
Q 021128 26 SYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE 82 (317)
Q Consensus 26 ~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~ 82 (317)
.-..||||++..+.++|.+.|.+|-...+|++.++- -.-..|..|.|.|..+-
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSf----YLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGGSF----YLQSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-H----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCH----HHHHHHHHHHHHHHHHH
Confidence 347899999999999999999999999999987643 23345777888776443
No 110
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=91.62 E-value=0.49 Score=37.50 Aligned_cols=38 Identities=24% Similarity=0.410 Sum_probs=22.1
Q ss_pred eecCCCCc-----cccCccceEEEEEecCceeEEEeeeccccCCCce
Q 021128 162 VIKPAPGK-----RRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVK 203 (317)
Q Consensus 162 v~~~c~g~-----~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g 203 (317)
.|..|.|+ +.|+|.|.+.... +++ +.....|+.|.|.|
T Consensus 43 ~C~~C~GsG~~~C~~C~G~G~v~~~~-~g~---~q~~~~C~~C~G~G 85 (111)
T PLN03165 43 PCFPCSGTGAQVCRFCVGSGNVTVEL-GGG---EKEVSKCINCDGAG 85 (111)
T ss_pred CCCCCCCCCCcCCCCCcCcCeEEEEe-CCc---EEEEEECCCCCCcc
Confidence 56777665 4577788765443 332 22345666666665
No 111
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=87.89 E-value=1 Score=39.28 Aligned_cols=41 Identities=32% Similarity=0.432 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCcc
Q 021128 34 PRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE 82 (317)
Q Consensus 34 ~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~ 82 (317)
+++||.+||.+|+.++..+|- +++ +.-..|-.||+.+.-.+
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~-----gd~---~~~~~IEaAYD~ILM~r 41 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYA-----GDE---KSREAIEAAYDAILMER 41 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhc-----CCH---HHHHHHHHHHHHHHHHH
Confidence 589999999999999988872 232 45566888998766443
No 112
>PF13446 RPT: A repeated domain in UCH-protein
Probab=84.34 E-value=2.4 Score=29.58 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=24.1
Q ss_pred CccchhcCCCCCCCHHHHHHHHHHHHH
Q 021128 25 KSYYEVLQVPRGASDEQIKRAYRKLAL 51 (317)
Q Consensus 25 ~~~Y~iLgv~~~as~~eIk~ayr~la~ 51 (317)
.+-|+.|||+++++.+.|-.+|+....
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 356999999999999999999998865
No 113
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=83.70 E-value=1.1 Score=42.39 Aligned_cols=54 Identities=35% Similarity=0.552 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCC----chHHHHHHHHHHHhHhhhCCccccccccc
Q 021128 36 GASDEQIKRAYRKLALKYHPDKNQG----NEEANKRFAEINNAYEVLSDSETRNIYDT 89 (317)
Q Consensus 36 ~as~~eIk~ayr~la~~~hPd~~~~----~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 89 (317)
-++..+|+.+|+..+...||++-.. ....++.|++|.+||++|++..+|...|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~ 60 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDS 60 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhh
Confidence 3677889999999999999998742 11356789999999999998766666664
No 114
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=69.05 E-value=11 Score=29.78 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCchH----HHHHHHHHHHhHhhhCCc
Q 021128 35 RGASDEQIKRAYRKLALKYHPDKNQGNEE----ANKRFAEINNAYEVLSDS 81 (317)
Q Consensus 35 ~~as~~eIk~ayr~la~~~hPd~~~~~~~----~~~~f~~i~~Ay~~L~d~ 81 (317)
+..+..+++.|.|.+-++-|||.-...++ .++-++.++.-.+.|..+
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 45678899999999999999997655442 355667777666666543
No 115
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=63.27 E-value=33 Score=25.05 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=29.1
Q ss_pred CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 021128 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQ 59 (317)
Q Consensus 24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~ 59 (317)
++|.-++.|+++-|+..||+.|-++..+|..=-..+
T Consensus 2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~P 37 (88)
T COG5552 2 CRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHP 37 (88)
T ss_pred ccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCc
Confidence 466778899999999999999999888887444433
No 116
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=57.42 E-value=5.3 Score=40.39 Aligned_cols=11 Identities=18% Similarity=0.525 Sum_probs=5.4
Q ss_pred ccccCCCceEE
Q 021128 195 VCDQCQNVKYE 205 (317)
Q Consensus 195 ~C~~C~G~g~~ 205 (317)
+|+.|+|+|.+
T Consensus 55 pc~~c~gkG~V 65 (715)
T COG1107 55 PCPKCRGKGTV 65 (715)
T ss_pred CCCeeccceeE
Confidence 45555554443
No 117
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=56.68 E-value=6.3 Score=19.12 Aligned_cols=13 Identities=54% Similarity=0.951 Sum_probs=10.2
Q ss_pred HHHHHHHhHhhhC
Q 021128 67 RFAEINNAYEVLS 79 (317)
Q Consensus 67 ~f~~i~~Ay~~L~ 79 (317)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 5778888998774
No 118
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=55.57 E-value=27 Score=35.52 Aligned_cols=33 Identities=18% Similarity=0.425 Sum_probs=17.1
Q ss_pred ccCccceEEEEEecCceeEEEeeeccccCCCce
Q 021128 171 RCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVK 203 (317)
Q Consensus 171 ~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g 203 (317)
.|.|+|.+..-...--.+.+..+..|+.|+-+.
T Consensus 73 ~c~G~gkv~~c~~cG~~~~~~~~~lc~~c~~~~ 105 (715)
T COG1107 73 ECGGTGKVLTCDICGDIIVPWEEGLCPECRRKP 105 (715)
T ss_pred cCCCceeEEeeccccceecCcccccChhHhhCC
Confidence 456666554432222233333344799998754
No 119
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=49.20 E-value=54 Score=30.91 Aligned_cols=61 Identities=23% Similarity=0.198 Sum_probs=42.2
Q ss_pred CCCccchhcCCCC-CCCHHHHHHHHHHHHHHh-------CCCCCCC---chHHHHHHHHHHHhHhhhCCccc
Q 021128 23 AGKSYYEVLQVPR-GASDEQIKRAYRKLALKY-------HPDKNQG---NEEANKRFAEINNAYEVLSDSET 83 (317)
Q Consensus 23 ~~~~~Y~iLgv~~-~as~~eIk~ayr~la~~~-------hPd~~~~---~~~~~~~f~~i~~Ay~~L~d~~~ 83 (317)
...++++.||++. ..|.+|+.+..+.++.+. ++|.+.. +..-++.++++.+||+.|.+.-.
T Consensus 80 ~R~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~~~p 151 (318)
T PF12725_consen 80 YRPPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAERYP 151 (318)
T ss_pred CCcCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 3567789999998 889999888777665553 3333211 11236889999999999876543
No 120
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=48.45 E-value=87 Score=23.00 Aligned_cols=57 Identities=23% Similarity=0.219 Sum_probs=37.8
Q ss_pred CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch--HH-HHHHHHHHHhHhhhCC
Q 021128 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNE--EA-NKRFAEINNAYEVLSD 80 (317)
Q Consensus 24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~--~~-~~~f~~i~~Ay~~L~d 80 (317)
++|--.+-|+.+-|+.+||..|=.+..+|..=-..++.. ++ +....+|..|-.-|.|
T Consensus 2 CRnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~AV~eva~at~~LL~ 61 (78)
T PF10041_consen 2 CRNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDRAVAEVAAATRRLLD 61 (78)
T ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 455666778999999999999999999997544444322 11 2333456665555543
No 121
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=43.60 E-value=18 Score=33.88 Aligned_cols=20 Identities=10% Similarity=0.192 Sum_probs=11.5
Q ss_pred eeccccCCCceEEeeCEEEE
Q 021128 193 EQVCDQCQNVKYEREGYFVT 212 (317)
Q Consensus 193 ~~~C~~C~G~g~~~~~~~~~ 212 (317)
..+|.+|.|.|-...-..+.
T Consensus 256 ~k~C~TC~gtgsll~~t~~v 275 (406)
T KOG2813|consen 256 KKPCTTCSGTGSLLNYTRIV 275 (406)
T ss_pred CcccccccCccceeeeEEEE
Confidence 34677777776555443333
No 122
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=41.36 E-value=38 Score=19.70 Aligned_cols=17 Identities=35% Similarity=0.602 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhCC
Q 021128 39 DEQIKRAYRKLALKYHP 55 (317)
Q Consensus 39 ~~eIk~ayr~la~~~hP 55 (317)
.++.|.+.|+.|+.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 47789999999999993
No 123
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=41.08 E-value=35 Score=21.77 Aligned_cols=37 Identities=11% Similarity=0.072 Sum_probs=27.2
Q ss_pred eeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeC
Q 021128 254 FRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTK 293 (317)
Q Consensus 254 F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~ 293 (317)
|-.+..+-|....|. ..-|..++|.|.||+.++|+-+
T Consensus 5 WvpD~~egfv~g~I~---~~~g~~vtV~~~~G~~~tv~~d 41 (42)
T PF02736_consen 5 WVPDPKEGFVKGEII---EEEGDKVTVKTEDGKEVTVKKD 41 (42)
T ss_dssp EEEESSSSEEEEEEE---EEESSEEEEEETTTEEEEEEGG
T ss_pred EEeCCcccEEEEEEE---EEcCCEEEEEECCCCEEEeCCC
Confidence 334555566666665 6789999999999998888754
No 124
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=40.35 E-value=73 Score=30.12 Aligned_cols=60 Identities=17% Similarity=0.158 Sum_probs=39.1
Q ss_pred hccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCC-CCCchHHHHHHHHHHHhHhhhC
Q 021128 20 NVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDK-NQGNEEANKRFAEINNAYEVLS 79 (317)
Q Consensus 20 ~~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~-~~~~~~~~~~f~~i~~Ay~~L~ 79 (317)
......++|+.|||++..-..++-+.-...|.+.-|-. +-+++.-......+.++.+.|.
T Consensus 245 ~d~~R~~Fy~alGld~~~yD~~Vi~~Tn~~a~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l~ 305 (351)
T CHL00185 245 NDLQRSDFYAAIGLDARQFDMHVIRKTNESAARLFPVVLDVDNPKFFKYLDQCACANLKLI 305 (351)
T ss_pred hhcchHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCCHHHHHHHHHHHHHHHHHH
Confidence 44567899999999997766665555566666666655 4445544455555666666554
No 125
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=36.85 E-value=50 Score=25.53 Aligned_cols=52 Identities=15% Similarity=0.438 Sum_probs=32.7
Q ss_pred CCCCCCCH-HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCcccccccc-ccCc
Q 021128 32 QVPRGASD-EQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYD-TYGE 92 (317)
Q Consensus 32 gv~~~as~-~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD-~~G~ 92 (317)
|+++++.. .+|-+.++.+...+++ .++ +.+..+.+.| +.||.-+..|| .++.
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~----~~~---~~~~~l~~~y--~~~~~~~~~~~~~~~~ 104 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTG----GDP---ELLRGLAQMY--VEDPRFAAMYDKKFGP 104 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS-------H---HHHHHHHHHT--TSTHHHHHHHG-GGST
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhC----CCH---HHHHHHHHHH--HcCHHHHhhccccCCH
Confidence 45555433 3477777777777766 122 5777888888 78888888888 6554
No 126
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=36.04 E-value=56 Score=26.07 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=27.6
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCC-------CCCccEEEEEEEeCC
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKID-------GEPGDLKFRIRTAPH 251 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-------~~~GDL~v~i~v~~h 251 (317)
+..||.|+..|++|++.|.=...++ ...+|+.+.+++..+
T Consensus 2 ~~~lp~~l~~G~~i~i~G~~~~~~~~F~inl~~~~~di~lH~n~rf~ 48 (128)
T smart00276 2 TLPIPGGLKPGQTLTVRGIVLPDAKRFSINLLTGGDDIALHFNPRFN 48 (128)
T ss_pred cccCCCCCCCCCEEEEEEEECCCCCEEEEEeecCCCCEEEEEeccCC
Confidence 4578999999999999997554332 123577666666554
No 127
>PF04017 DUF366: Domain of unknown function (DUF366); InterPro: IPR007162 This is an archaeal family of unknown function.; PDB: 2DDZ_E.
Probab=32.95 E-value=18 Score=31.03 Aligned_cols=11 Identities=45% Similarity=0.857 Sum_probs=9.5
Q ss_pred eeEeCCcEEEE
Q 021128 254 FRREGNNLHTT 264 (317)
Q Consensus 254 F~R~G~DL~~~ 264 (317)
.+|+|+|||.+
T Consensus 102 ~~R~GDDLy~~ 112 (183)
T PF04017_consen 102 LRREGDDLYVN 112 (183)
T ss_dssp EEEETTEEEET
T ss_pred eeecccceeEC
Confidence 68999999975
No 128
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=32.64 E-value=30 Score=31.61 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=26.0
Q ss_pred EEEecCHHHHhcC-CEEEEecCCCCeEEEeeC
Q 021128 263 TTVTVTLVQALVG-FEKTIEHLDEHLVDISTK 293 (317)
Q Consensus 263 ~~~~Isl~eAllG-~~~~v~tldG~~i~i~~~ 293 (317)
++.+|-++||++| |..+|++.|++.=.+.+.
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiT 49 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQVNRLEIT 49 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCccceeeEEEc
Confidence 3468899999999 789999999987677665
No 129
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=32.41 E-value=15 Score=38.89 Aligned_cols=60 Identities=15% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHhcCc--eeEEEeeeeeecCCCCc---ccc-CccceEEEEEecCceeEEEeeeccccCCCceE
Q 021128 145 LEDLYMGG--SLKVWREKNVIKPAPGK---RRC-NCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKY 204 (317)
Q Consensus 145 lee~~~G~--~~~v~~~r~v~~~c~g~---~~C-~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~ 204 (317)
+.+|+.-+ +.++.+.+..|..|... .+| .|+..+......|-.-.....+.|+.|.....
T Consensus 638 i~~A~~~~~g~i~vei~~r~Cp~Cg~~t~~~~Cp~CG~~T~~~~~Cp~C~~~~~~~~C~~C~~~~~ 703 (900)
T PF03833_consen 638 IQKAAKKGKGTIEVEIGRRRCPKCGKETFYNRCPECGSHTEPVYVCPDCGIEVEEDECPKCGRETT 703 (900)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHHHHhcCCCeeEEeeecccCcccCCcchhhcCcccCCccccceeccccccccCccccccccccCc
Confidence 45555544 46666667778777542 456 46554333222222223344668999987543
No 130
>COG1974 LexA SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]
Probab=28.92 E-value=1.1e+02 Score=26.85 Aligned_cols=46 Identities=28% Similarity=0.486 Sum_probs=30.8
Q ss_pred ecCCCCCCCEEEEcccCCCCCCCCCccEEEEEEEeC-C--CCeeEeCCcEEEE
Q 021128 215 IEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAP-H--DRFRREGNNLHTT 264 (317)
Q Consensus 215 Ip~G~~~G~~i~~~g~G~~~~~~~~GDL~v~i~v~~-h--~~F~R~G~DL~~~ 264 (317)
+.+|+.+|+.|.+...-+ -.+||++|....-. + +.|.++|+.++-.
T Consensus 123 ~~~gi~dGDlvvV~~~~~----a~~GdiVvA~i~g~e~TvKrl~~~g~~i~L~ 171 (201)
T COG1974 123 IDAGILDGDLVVVDPTED----AENGDIVVALIDGEEATVKRLYRDGNQILLK 171 (201)
T ss_pred ccCcCCCCCEEEEcCCCC----CCCCCEEEEEcCCCcEEEEEEEEeCCEEEEE
Confidence 367888999999985433 35689887655443 2 3466777766644
No 131
>PRK04023 DNA polymerase II large subunit; Validated
Probab=28.72 E-value=36 Score=36.89 Aligned_cols=60 Identities=17% Similarity=0.287 Sum_probs=33.4
Q ss_pred cHHHHhc-CceeEEEeeeeeecCCCCc---ccc-CccceEEEEEecCceeEEEeeeccccCCCce
Q 021128 144 TLEDLYM-GGSLKVWREKNVIKPAPGK---RRC-NCRNEVYHKQIGPGMFQQMTEQVCDQCQNVK 203 (317)
Q Consensus 144 tlee~~~-G~~~~v~~~r~v~~~c~g~---~~C-~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g 203 (317)
++.+|+. +++.++.+....|..|... ..| +|+.........|-.-.+.....|+.|.-..
T Consensus 609 ~i~~A~~~~g~~eVEVg~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~~~~y~CPKCG~El 673 (1121)
T PRK04023 609 DINKAAKYKGTIEVEIGRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIEVEEDECEKCGREP 673 (1121)
T ss_pred cHHHHHhcCCceeecccCccCCCCCCcCCcccCCCCCCCCCcceeCccccCcCCCCcCCCCCCCC
Confidence 4888888 7888888888888888543 455 3543311111111111112245688887653
No 132
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=28.72 E-value=1.6e+02 Score=27.61 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=36.3
Q ss_pred hccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCC-CCCchHHHHHHHHHHHhHhhh
Q 021128 20 NVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDK-NQGNEEANKRFAEINNAYEVL 78 (317)
Q Consensus 20 ~~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~-~~~~~~~~~~f~~i~~Ay~~L 78 (317)
......++|+.|||++..-..++-+--...|.+.-|-. +-+++.-......+.++.+.|
T Consensus 229 ~d~~R~~Fy~alGld~~~yD~~Vi~~Tn~~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l 288 (323)
T cd01047 229 NDHQRPDFYEALGLDTTEFDMHVIRETNETAARVFPAVLDVDNPEFRRGLDRLVDLNLKL 288 (323)
T ss_pred eccchHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCChHHHHHHHHHHHHHHHH
Confidence 44557899999999997766665555566666666655 334453333444444444444
No 133
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=28.56 E-value=1.5e+02 Score=23.13 Aligned_cols=33 Identities=9% Similarity=0.265 Sum_probs=17.7
Q ss_pred CCCccchhcCCCCCC-----CHHHHHHHHHHHHHHhCC
Q 021128 23 AGKSYYEVLQVPRGA-----SDEQIKRAYRKLALKYHP 55 (317)
Q Consensus 23 ~~~~~Y~iLgv~~~a-----s~~eIk~ayr~la~~~hP 55 (317)
+-.+|++.|||+=+. +.=-|-|.|.....+.++
T Consensus 13 sAEdFf~fF~V~YDp~vv~V~RLHILkrF~~yL~~~~~ 50 (105)
T PF03206_consen 13 SAEDFFDFFGVPYDPKVVNVNRLHILKRFGQYLRAADF 50 (105)
T ss_pred CHHHHHHHhCCCcchhHHHHhhHHHHHHHHHHHHhccC
Confidence 345666666666543 333355566665555544
No 134
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=28.44 E-value=1.1e+02 Score=28.68 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=36.5
Q ss_pred hccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCC-CCCchHHHHHHHHHHHhHhhhC
Q 021128 20 NVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDK-NQGNEEANKRFAEINNAYEVLS 79 (317)
Q Consensus 20 ~~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~-~~~~~~~~~~f~~i~~Ay~~L~ 79 (317)
..-...++|+.|||++..-..++-+--...|.+.-|-. +-+++.-......+.++...|.
T Consensus 239 ~d~~R~~Fy~alGld~~~yD~~Vi~~Tne~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l~ 299 (337)
T TIGR02029 239 RDHQRPGFYEALGLDATDFDLQVFRNTNETSGRIFPMTLNTEHPRFRRLLDRMAGYSEKIS 299 (337)
T ss_pred hhcccHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCCHHHHHHHHHHHHHHHHHH
Confidence 45567899999999997655555555555666666654 4445533344444444554443
No 135
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.17 E-value=96 Score=25.05 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=28.7
Q ss_pred chhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 021128 28 YEVLQVPRGASDEQIKRAYRKLALKYHPDKNQG 60 (317)
Q Consensus 28 Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~ 60 (317)
-.||+|+..-+.+||-+.|..|-....+.+.+.
T Consensus 62 ~qILnV~~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 62 QQILNVKEPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred hhHhCCCCCCCHHHHHHHHHHHHhccCcccCcc
Confidence 579999999999999999999988877776654
No 136
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=27.82 E-value=22 Score=32.02 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=11.7
Q ss_pred eccccCCCceEEeeC
Q 021128 194 QVCDQCQNVKYEREG 208 (317)
Q Consensus 194 ~~C~~C~G~g~~~~~ 208 (317)
..|++|+|.|.+.++
T Consensus 39 vtCPTCqGtGrIP~e 53 (238)
T PF07092_consen 39 VTCPTCQGTGRIPRE 53 (238)
T ss_pred CcCCCCcCCccCCcc
Confidence 369999999877654
No 137
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=27.66 E-value=1.6e+02 Score=27.99 Aligned_cols=59 Identities=12% Similarity=0.170 Sum_probs=35.1
Q ss_pred hccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCC-CCCchHHHHHHHHHHHhHhhh
Q 021128 20 NVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDK-NQGNEEANKRFAEINNAYEVL 78 (317)
Q Consensus 20 ~~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~-~~~~~~~~~~f~~i~~Ay~~L 78 (317)
..-...++|+.|||++..-..++-+--.+.+.+.-|-. +-+++.-......+.++...|
T Consensus 245 ~d~~R~~Fy~alGld~~~yD~~Vi~~Tne~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l 304 (357)
T PLN02508 245 NDHQRTAFYEGIGLNTKQFNMHVIIETNRTTARIFPAVLDVENPEFKRKLDRMVVINQKL 304 (357)
T ss_pred eccchHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCCHHHHHHHHHHHHHHHHH
Confidence 44457799999999997666665555555666666654 334453333334444444444
No 138
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=27.42 E-value=87 Score=25.24 Aligned_cols=24 Identities=13% Similarity=-0.018 Sum_probs=18.6
Q ss_pred eCEEEEEEecCCCCCCCEEEEccc
Q 021128 207 EGYFVTVDIEKGMQDGQEVVFYED 230 (317)
Q Consensus 207 ~~~~~~V~Ip~G~~~G~~i~~~g~ 230 (317)
+...+++.-+.+++.||.+.+.-.
T Consensus 40 ~~~~~~~~~~~~~~~GD~V~v~i~ 63 (135)
T PF04246_consen 40 KPITFRAPNPIGAKVGDRVEVEIP 63 (135)
T ss_pred CcEEEEecCCCCCCCCCEEEEEec
Confidence 456778888899999999887643
No 139
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=27.31 E-value=1.5e+02 Score=28.21 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=37.4
Q ss_pred hccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCC-CCCchHHHHHHHHHHHhHhhhC
Q 021128 20 NVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDK-NQGNEEANKRFAEINNAYEVLS 79 (317)
Q Consensus 20 ~~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~-~~~~~~~~~~f~~i~~Ay~~L~ 79 (317)
......++|+.|||++..-..++-+--...|.+.-|-. +-+++.-......+.++.+.|.
T Consensus 249 ~d~~R~~Fy~alGlD~~~yD~~Vi~~Tne~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l~ 309 (355)
T PRK13654 249 RDHERPDFYEALGLDAREYDQEVIRKTNETSARVFPVVLDVDDPRFYARLERCVENNEKLR 309 (355)
T ss_pred ecccchHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCChHHHHHHHHHHHHHHHHH
Confidence 44557899999999997766665555566667766765 3344533344444444554443
No 140
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=26.81 E-value=53 Score=24.81 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=26.5
Q ss_pred cCCCCeEEEeeCCcccCCCCcEEEecCCcccccccC
Q 021128 282 HLDEHLVDISTKVSMNMCFGTSFAMTKKRIEVLKFS 317 (317)
Q Consensus 282 tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~~~~~~ 317 (317)
|||+. +.|.-=.|++...|--+.||.|+.|.-||.
T Consensus 24 T~D~e-fVvhdirVi~G~~GlfVAMPSrrt~dgEFr 58 (95)
T COG2088 24 TLDNE-FVVHDIRVIEGNNGLFVAMPSRRTPDGEFR 58 (95)
T ss_pred Eecce-EEEeccEEEeCCcceEEEccCccCCCcchh
Confidence 56664 445555667777799999999999999883
No 141
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=25.63 E-value=59 Score=22.62 Aligned_cols=14 Identities=36% Similarity=0.579 Sum_probs=10.9
Q ss_pred ecccHHHHhcCcee
Q 021128 141 LDATLEDLYMGGSL 154 (317)
Q Consensus 141 l~vtlee~~~G~~~ 154 (317)
++|+|+|+.+|-.+
T Consensus 31 FeIsLeDl~~GE~V 44 (67)
T COG5216 31 FEISLEDLRNGEVV 44 (67)
T ss_pred eEEEHHHhhCCceE
Confidence 67889999988543
No 142
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=25.62 E-value=57 Score=35.53 Aligned_cols=37 Identities=24% Similarity=0.471 Sum_probs=22.9
Q ss_pred cccCccceEEEE-EecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 170 RRCNCRNEVYHK-QIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 170 ~~C~g~G~~~~~-~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
+.|+|.|.+... ...+. ....|+.|+|+.+..+.-.+
T Consensus 742 ~~C~G~G~~~~~~~f~~~-----~~~~C~~C~G~R~~~e~l~v 779 (943)
T PRK00349 742 EACQGDGVIKIEMHFLPD-----VYVPCDVCKGKRYNRETLEV 779 (943)
T ss_pred CcccccceEEEEeccCCC-----ccccCccccCccccccceEE
Confidence 457777776533 21111 13589999999887765333
No 143
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=25.22 E-value=84 Score=21.12 Aligned_cols=42 Identities=12% Similarity=0.163 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccc
Q 021128 43 KRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDT 89 (317)
Q Consensus 43 k~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 89 (317)
.+.++...+..||+.+ ..+..+.+.+.|..|++.++...+|.
T Consensus 12 ~~~~~~~~~~~~~~~~-----~~~i~~~~~~~W~~l~~~~k~~y~~~ 53 (66)
T cd00084 12 SQEHRAEVKAENPGLS-----VGEISKILGEMWKSLSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHHHHCcCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3455666677888844 34677889999999998776655443
No 144
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.74 E-value=41 Score=36.51 Aligned_cols=35 Identities=17% Similarity=0.446 Sum_probs=21.4
Q ss_pred cccCccceEEEEEecCceeEEEeeeccccCCCceEEeeC
Q 021128 170 RRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREG 208 (317)
Q Consensus 170 ~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~ 208 (317)
+.|+|.|.+... +. ++. -....|+.|+|+++..+.
T Consensus 740 ~~C~G~G~~~~~-~~--f~~-~~~~~C~~C~G~R~~~e~ 774 (924)
T TIGR00630 740 EACQGDGVIKIE-MH--FLP-DVYVPCEVCKGKRYNRET 774 (924)
T ss_pred CCCccceEEEEE-cc--CCC-CcccCCCCcCCceeChHH
Confidence 457777766532 11 111 114589999999887764
No 145
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=23.50 E-value=74 Score=35.48 Aligned_cols=25 Identities=12% Similarity=0.094 Sum_probs=19.8
Q ss_pred cHHHHh--------cCceeEEEeeeeeecCCCC
Q 021128 144 TLEDLY--------MGGSLKVWREKNVIKPAPG 168 (317)
Q Consensus 144 tlee~~--------~G~~~~v~~~r~v~~~c~g 168 (317)
++.+|. .++..++.+.+..|..|..
T Consensus 643 ~I~kAa~~a~~~~d~~G~ieVEV~~rkCPkCG~ 675 (1337)
T PRK14714 643 DVAKAAKHAPDMSDEGGVIEVEVGRRRCPSCGT 675 (1337)
T ss_pred cHHHHHHhhhhccccCCeEEEEEEEEECCCCCC
Confidence 588888 6777788888888988865
No 146
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=23.12 E-value=61 Score=24.88 Aligned_cols=20 Identities=35% Similarity=0.409 Sum_probs=17.9
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 021128 30 VLQVPRGASDEQIKRAYRKL 49 (317)
Q Consensus 30 iLgv~~~as~~eIk~ayr~l 49 (317)
++-|+++|+..|||+|..++
T Consensus 25 vF~V~~~AtK~~IK~AvE~l 44 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEEL 44 (94)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 67899999999999998876
No 147
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=22.58 E-value=40 Score=31.73 Aligned_cols=59 Identities=22% Similarity=0.189 Sum_probs=41.7
Q ss_pred chhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCcccccccccc
Q 021128 28 YEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTY 90 (317)
Q Consensus 28 Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~ 90 (317)
|..+.+.-.+....|++||.-+.. .||+++++.- .+|.++-.-|+.+.+...+..++.+
T Consensus 28 ~~~~~~~~~~~~k~i~ka~~i~~~-~~~~~t~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~ 86 (335)
T KOG0724|consen 28 YEKLSLWTEEEFKKIEKALAILDD-DEPRRTPDSW---DKFAEALPLEKRLEDKIEEYIGLVF 86 (335)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhc-cccccchhhh---hHHHhcCccccccchhHHhhhhhHH
Confidence 666777777778899999999977 9999887543 2555554444666666666666643
No 148
>PF09285 Elong-fact-P_C: Elongation factor P, C-terminal; InterPro: IPR015365 These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology []. ; GO: 0043043 peptide biosynthetic process, 0005737 cytoplasm; PDB: 1YBY_A 3OYY_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H.
Probab=22.00 E-value=89 Score=21.52 Aligned_cols=20 Identities=5% Similarity=0.222 Sum_probs=13.9
Q ss_pred EEEEecCCCCCCCEEEEccc
Q 021128 211 VTVDIEKGMQDGQEVVFYED 230 (317)
Q Consensus 211 ~~V~Ip~G~~~G~~i~~~g~ 230 (317)
+.|.||+-++.|++|++.-.
T Consensus 30 ~~i~VP~FI~~Gd~I~VdT~ 49 (56)
T PF09285_consen 30 AEIQVPLFIEEGDKIKVDTR 49 (56)
T ss_dssp -EEEEETT--TT-EEEEETT
T ss_pred CEEEccceecCCCEEEEECC
Confidence 67999999999999998643
No 149
>TIGR03829 YokU_near_AblA uncharacterized protein, YokU family. Members of this protein family occur in various species of the genus Bacillus, always next to the gene (kamA or ablA) for lysine 2,3-aminomutase. Members have a pair of CXXC motifs, and share homology to the amino-terminal region of a family of putative transcription factors for which the C-terminal is modeled by pfam01381, a helix-turn-helix domain model. This family, however, is shorter and lacks the helix-turn-helix region. The function of this protein family is unknown, but a regulatory role in compatible solute biosynthesis is suggested by local genome context.
Probab=21.94 E-value=97 Score=23.53 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=18.3
Q ss_pred ccccCCCceEEeeCEEEEEEecCC
Q 021128 195 VCDQCQNVKYEREGYFVTVDIEKG 218 (317)
Q Consensus 195 ~C~~C~G~g~~~~~~~~~V~Ip~G 218 (317)
.|..|++........++.+..|.|
T Consensus 1 ~C~~C~~~~~~~~~tTv~~el~~G 24 (89)
T TIGR03829 1 KCRWCEEEKAIARTTTVYWELPDG 24 (89)
T ss_pred CCcccCCCceecceEEEEEEecCC
Confidence 488998877777777777777765
No 150
>PF14706 Tnp_DNA_bind: Transposase DNA-binding; PDB: 3ECP_A 4DM0_A 1MUS_A 1MUH_A 1MM8_A.
Probab=21.83 E-value=1.1e+02 Score=21.20 Aligned_cols=41 Identities=24% Similarity=0.396 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHh--CCCCCCCchHHHHHHHHHHHhHhhhCCcc
Q 021128 40 EQIKRAYRKLALKY--HPDKNQGNEEANKRFAEINNAYEVLSDSE 82 (317)
Q Consensus 40 ~eIk~ayr~la~~~--hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~ 82 (317)
.-+.+.+.+++..+ ||... -+.+-..+.++.-||..|++|.
T Consensus 15 ~Rl~~Rl~~l~~~la~~p~~S--ip~a~~~wa~tkaAYRF~~N~~ 57 (58)
T PF14706_consen 15 KRLTRRLVKLAESLAEKPGAS--IPQACQDWAETKAAYRFFRNPR 57 (58)
T ss_dssp HHHHHHHHHHHHHHHHTTTS---HHHHTT-HHHHHHHHHHHT-TT
T ss_pred chHHHHHHHHHHHHHHCCCCc--cchhccCHHHHHHHHHhhcCCC
Confidence 34667777776644 66654 3446667888999999998874
No 151
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=21.76 E-value=16 Score=32.85 Aligned_cols=60 Identities=30% Similarity=0.511 Sum_probs=42.8
Q ss_pred ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCcc
Q 021128 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEE 93 (317)
Q Consensus 21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~ 93 (317)
.....+||++||+....+.. .++|+ |.+.... ...|.....+...|.++ .|..||..+..
T Consensus 94 ~~~~~~~~~~~g~~~~~~~~--~~~~~--------~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 153 (306)
T KOG0714|consen 94 RKPDKDFYEFFGVSSPFSGS--KKGYR--------DKNAAPG--EEAFKSEGKAFQSLYGP-KRKQYDSSGSD 153 (306)
T ss_pred CchhhhHHHHhCCCCCCccc--cccCC--------ccccccC--ccccccccccccccCCC-ccccccccccc
Confidence 33467899999988876654 55555 3333221 46677777889999999 99999987754
No 152
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=20.79 E-value=1.2e+02 Score=21.47 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccc
Q 021128 44 RAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDT 89 (317)
Q Consensus 44 ~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 89 (317)
+..|...++-||+.. ..+..+.|.+.+..|++.++...+|.
T Consensus 14 ~~~r~~~~~~~p~~~-----~~eisk~l~~~Wk~ls~~eK~~y~~~ 54 (72)
T cd01388 14 KRHRRKVLQEYPLKE-----NRAISKILGDRWKALSNEEKQPYYEE 54 (72)
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345555667788853 33677789999999998887765553
Done!