Query 021128
Match_columns 317
No_of_seqs 245 out of 2123
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 13:09:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lz8_A Putative chaperone DNAJ 100.0 2.2E-60 7.6E-65 444.5 17.8 260 17-314 20-284 (329)
2 1nlt_A Protein YDJ1, mitochond 100.0 9.2E-43 3.1E-47 314.1 21.4 181 131-314 8-217 (248)
3 3agx_A DNAJ homolog subfamily 100.0 1.8E-38 6E-43 273.2 18.3 145 134-314 2-146 (181)
4 2q2g_A HSP40 protein, heat sho 100.0 1.2E-35 4.1E-40 255.4 19.1 144 133-314 2-146 (180)
5 1c3g_A Heat shock protein 40; 100.0 5.3E-34 1.8E-38 243.0 17.6 139 135-314 1-140 (170)
6 1bq0_A DNAJ, HSP40; chaperone, 99.9 1.7E-25 5.9E-30 175.0 5.2 98 24-122 2-99 (103)
7 1hdj_A Human HSP40, HDJ-1; mol 99.9 2.9E-23 1E-27 153.7 6.5 73 24-97 2-74 (77)
8 2ctr_A DNAJ homolog subfamily 99.9 3.8E-23 1.3E-27 157.1 6.5 77 21-98 3-79 (88)
9 2dn9_A DNAJ homolog subfamily 99.9 4E-23 1.4E-27 153.7 5.5 74 21-94 3-76 (79)
10 2o37_A Protein SIS1; HSP40, J- 99.9 4.1E-23 1.4E-27 158.1 5.3 75 21-98 4-78 (92)
11 2ej7_A HCG3 gene; HCG3 protein 99.9 1.6E-22 5.4E-27 151.6 6.1 75 21-95 5-80 (82)
12 2dmx_A DNAJ homolog subfamily 99.9 1.5E-22 5.2E-27 155.0 6.1 76 22-97 6-82 (92)
13 2och_A Hypothetical protein DN 99.9 2.2E-22 7.4E-27 147.5 5.6 70 21-93 4-73 (73)
14 2ctp_A DNAJ homolog subfamily 99.9 2E-22 6.8E-27 149.6 5.2 73 21-94 3-75 (78)
15 2yua_A Williams-beuren syndrom 99.9 2.9E-22 9.8E-27 155.5 5.7 70 21-90 13-82 (99)
16 2ctq_A DNAJ homolog subfamily 99.9 1E-22 3.4E-27 161.6 3.0 76 21-96 16-91 (112)
17 2ctw_A DNAJ homolog subfamily 99.9 3.4E-22 1.2E-26 157.8 5.4 77 21-97 13-89 (109)
18 2lgw_A DNAJ homolog subfamily 99.8 3.9E-22 1.3E-26 154.6 4.8 73 25-97 2-75 (99)
19 2cug_A Mkiaa0962 protein; DNAJ 99.8 5.1E-22 1.7E-26 150.8 5.3 73 21-94 13-85 (88)
20 1wjz_A 1700030A21RIK protein; 99.8 3.9E-21 1.4E-25 147.6 4.2 71 22-92 13-89 (94)
21 3apq_A DNAJ homolog subfamily 99.8 6.4E-21 2.2E-25 166.8 6.0 74 25-98 2-75 (210)
22 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 1.3E-20 4.4E-25 148.8 3.3 73 21-93 11-87 (109)
23 2ys8_A RAB-related GTP-binding 99.8 1.4E-19 4.9E-24 137.8 5.9 65 21-86 23-87 (90)
24 2l6l_A DNAJ homolog subfamily 99.8 3E-19 1E-23 149.6 4.8 72 21-92 6-83 (155)
25 1gh6_A Large T antigen; tumor 99.7 1.3E-19 4.6E-24 143.5 0.4 65 24-92 7-73 (114)
26 1faf_A Large T antigen; J doma 99.7 6E-19 2.1E-23 131.0 3.5 67 24-95 10-78 (79)
27 2pf4_E Small T antigen; PP2A, 99.7 1.3E-19 4.5E-24 153.2 -0.9 66 23-92 9-76 (174)
28 1iur_A KIAA0730 protein; DNAJ 99.7 9.2E-19 3.2E-23 132.4 3.2 66 22-87 13-79 (88)
29 1n4c_A Auxilin; four helix bun 99.7 2.6E-18 8.8E-23 146.2 5.0 67 21-87 113-182 (182)
30 2qwo_B Putative tyrosine-prote 99.7 2.3E-18 8E-23 130.7 3.9 57 24-80 32-91 (92)
31 3hho_A CO-chaperone protein HS 99.7 4.3E-18 1.5E-22 145.0 4.3 67 23-89 2-75 (174)
32 3apo_A DNAJ homolog subfamily 99.7 3E-18 1E-22 177.0 1.8 78 21-98 17-94 (780)
33 3ag7_A Putative uncharacterize 99.7 1.1E-17 3.7E-22 130.9 3.0 63 20-83 36-105 (106)
34 1fpo_A HSC20, chaperone protei 99.7 1.2E-17 4.2E-22 141.8 3.5 67 25-91 1-74 (171)
35 3bvo_A CO-chaperone protein HS 99.7 2.3E-17 7.9E-22 144.1 4.3 68 22-89 40-114 (207)
36 2guz_A Mitochondrial import in 99.6 3.9E-17 1.3E-21 118.7 3.1 60 22-85 11-71 (71)
37 3i38_A Putative chaperone DNAJ 99.6 5.7E-16 1.9E-20 121.9 7.9 62 249-313 2-63 (109)
38 3uo3_A J-type CO-chaperone JAC 99.6 8.1E-17 2.8E-21 137.7 2.5 68 20-90 6-80 (181)
39 1xao_A YDJ1, mitochondrial pro 99.5 1.2E-14 4.2E-19 116.4 7.5 60 253-314 1-62 (121)
40 2y4t_A DNAJ homolog subfamily 99.1 6.7E-11 2.3E-15 111.7 6.9 68 22-89 379-449 (450)
41 3i38_A Putative chaperone DNAJ 99.1 2.4E-10 8.1E-15 89.6 7.7 75 132-255 9-83 (109)
42 2ctt_A DNAJ homolog subfamily 99.0 2.2E-11 7.6E-16 94.8 -0.9 79 134-215 1-103 (104)
43 1xao_A YDJ1, mitochondrial pro 99.0 9.5E-10 3.2E-14 87.8 8.4 80 132-258 4-88 (121)
44 2guz_B Mitochondrial import in 98.9 1.8E-09 6.3E-14 76.3 4.6 52 25-80 4-58 (65)
45 3agx_A DNAJ homolog subfamily 98.7 4.1E-08 1.4E-12 83.7 8.4 76 132-254 90-167 (181)
46 2q2g_A HSP40 protein, heat sho 98.7 6.2E-08 2.1E-12 82.5 8.5 76 132-254 90-167 (180)
47 1c3g_A Heat shock protein 40; 98.6 4.9E-08 1.7E-12 82.4 7.5 76 132-254 84-161 (170)
48 1nlt_A Protein YDJ1, mitochond 98.6 3.9E-08 1.3E-12 88.0 7.0 81 132-259 159-244 (248)
49 3lz8_A Putative chaperone DNAJ 98.4 3.1E-07 1.1E-11 85.3 7.1 75 132-255 229-303 (329)
50 1exk_A DNAJ protein; extended 96.5 0.0015 5E-08 47.4 2.7 50 151-205 1-62 (79)
51 2pzi_A Probable serine/threoni 92.1 0.14 4.6E-06 51.6 5.1 53 17-77 621-675 (681)
52 3lcz_A YCZA, inhibitor of trap 89.6 0.12 4.1E-06 34.4 1.3 25 171-208 14-38 (53)
53 2bx9_A Anti-trap, AT, tryptoph 78.4 0.79 2.7E-05 30.3 1.3 14 194-207 24-37 (53)
54 3pmq_A Decaheme cytochrome C M 40.6 1.9 6.4E-05 43.3 -3.6 30 138-167 168-198 (669)
55 2cqn_A Formin-binding protein 38.5 29 0.00099 24.4 3.4 55 37-92 6-63 (77)
56 2ddz_A 190AA long hypothetical 33.9 13 0.00046 30.8 1.2 12 253-264 105-116 (190)
57 1uzc_A Hypothetical protein FL 31.8 59 0.002 22.4 4.1 53 35-90 10-65 (71)
58 3zxf_A Galectin-7; sugar bindi 24.1 1.3E+02 0.0044 23.2 5.4 43 210-252 7-59 (138)
59 1ny9_A Transcriptional activat 23.6 78 0.0027 24.5 4.0 43 42-92 82-124 (143)
60 3ga8_A HTH-type transcriptiona 22.4 99 0.0034 21.3 3.9 30 195-229 4-33 (78)
61 1i11_A Transcription factor SO 22.2 89 0.003 21.5 3.7 41 44-89 17-57 (81)
62 4a3n_A Transcription factor SO 21.0 63 0.0022 21.4 2.6 41 43-88 14-54 (71)
63 1ckt_A High mobility group 1 p 20.6 1.2E+02 0.004 20.1 4.0 41 45-88 15-55 (71)
No 1
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=100.00 E-value=2.2e-60 Score=444.50 Aligned_cols=260 Identities=27% Similarity=0.395 Sum_probs=128.6
Q ss_pred HhhhccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccc
Q 021128 17 YALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLK 96 (317)
Q Consensus 17 ~~~~~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~ 96 (317)
+....+..+|||++|||+++||.+|||+|||+||++||||+|+++ .|+++|++|++||++|+||.+|+.||+|+..+..
T Consensus 20 ~~~~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~ 98 (329)
T 3lz8_A 20 FQSNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-DAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRND 98 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCCh-HHHHHHHHHHHHHHHhhhhhhhcccchhhccccC
Confidence 344455678999999999999999999999999999999999865 5889999999999999999999999999654221
Q ss_pred cccCC-CC-CCCCc-ccChhhhhhhccCCCC-CCcccccccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCcccc
Q 021128 97 QHAAG-GG-RGGGM-GVNIQDIFSSFFGGGP-MEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRC 172 (317)
Q Consensus 97 ~~~~~-~~-~~~~~-~~~~~d~F~~~fg~~~-~~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C 172 (317)
.+..+ .+ .+++| +.++.|+|++|||++. ....+...++.|+.++|.|||+|+|.|+++++.+.+.+|+
T Consensus 99 ~~~~~~~~~~~~~f~~~~f~diF~~~Fg~~g~~~~~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~-------- 170 (329)
T 3lz8_A 99 PGFGRQRQTHEQSYSQQDFDDIFSSMFGQQAHQRRRQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVYN-------- 170 (329)
T ss_dssp --------------------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECC--------
T ss_pred CCcccccccccCCcCCCchhhhhHhhhcCcCCCCCCCCcCCCCCEEEEEecchhhhhhccceEEEEEEEeec--------
Confidence 11100 00 01122 1357899999998632 1112235689999999999999999999999998876642
Q ss_pred CccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCCCC-CCCCccEEEEEEEeCC
Q 021128 173 NCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKI-DGEPGDLKFRIRTAPH 251 (317)
Q Consensus 173 ~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDL~v~i~v~~h 251 (317)
+.|. ..+...++++|.||||+++|++|+|+|+|++++ ++.+|||||+|+++||
T Consensus 171 -g~G~-------------------------v~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~~gg~~GDL~v~I~v~~h 224 (329)
T 3lz8_A 171 -VFGM-------------------------IESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPH 224 (329)
T ss_dssp -SCC--------------------------CCEEEEEEEEEEECTTCCTTCEEEESSCSCCC---CCCCCEEEEECCCCC
T ss_pred -CCeE-------------------------EEEecceEEEEeCCCCCCCCCEEEEcccccCCCCCCCCCcEEEEEEEecC
Confidence 1121 123335689999999999999999999999986 4678999999999999
Q ss_pred CCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCccccc
Q 021128 252 DRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEVL 314 (317)
Q Consensus 252 ~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~~~ 314 (317)
+.|+|+|+||+++++|+|+||+||++++|+||||+ +.|+++..+++ |+.++|+|||+|..
T Consensus 225 ~~F~R~G~DL~~~~~Isl~eAllG~~v~VptLdG~-v~l~ip~gt~~--g~~~rl~G~GmP~~ 284 (329)
T 3lz8_A 225 PLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKES-ILLTVPPGSQA--GQRLRIKGKGLVSK 284 (329)
T ss_dssp SSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSC-EEEEECTTCCT--TCEEEETTCSCBCS
T ss_pred CccEEcCCcEEEEEECCHHHHcCCCeEEEECCCCC-EEEEECCCCCC--CCEEEEcCCCCCCC
Confidence 99999999999999999999999999999999998 79999988876 69999999999963
No 2
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=100.00 E-value=9.2e-43 Score=314.10 Aligned_cols=181 Identities=29% Similarity=0.550 Sum_probs=162.6
Q ss_pred cccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc----------cccCccceEEE-EEecCceeEEEe------
Q 021128 131 IVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK----------RRCNCRNEVYH-KQIGPGMFQQMT------ 192 (317)
Q Consensus 131 ~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~----------~~C~g~G~~~~-~~~~~g~~~~~~------ 192 (317)
+.++.|++++|.|||||||+|+++++.+.+. .|..|.|+ +.|+|.|.+.. ++.++ ++++++
T Consensus 8 ~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~~C 86 (248)
T 1nlt_A 8 PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGP-MIQRFQTECDVC 86 (248)
T ss_dssp CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSS-EEEEEECSCTTC
T ss_pred CCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCc-eEEEEEEcCCCC
Confidence 4579999999999999999999999999986 67889775 45888887654 46666 555443
Q ss_pred ---------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCCCCCCCCccEEEEEEEeCCCCeeEeCCcEEE
Q 021128 193 ---------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNLHT 263 (317)
Q Consensus 193 ---------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~ 263 (317)
+++|+.|+|.+++.+.++++|.||||+++|++|+|+|+|++++++.+|||||+|+++||+.|+|+|+|||+
T Consensus 87 ~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~~ 166 (248)
T 1nlt_A 87 HGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVY 166 (248)
T ss_dssp SSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEEE
T ss_pred CCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCHHHHhcCCEEEEecCCCCeEEEeeC--CcccCCCCcEEEecCCccccc
Q 021128 264 TVTVTLVQALVGFEKTIEHLDEHLVDISTK--VSMNMCFGTSFAMTKKRIEVL 314 (317)
Q Consensus 264 ~~~Isl~eAllG~~~~v~tldG~~i~i~~~--~v~~~~~~~~~~~~~k~~~~~ 314 (317)
+++|||+|||||++++|+||||+.+.|+++ +++++ |+.++|+|||+|..
T Consensus 167 ~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~--g~~~rl~g~Gmp~~ 217 (248)
T 1nlt_A 167 EAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAP--GMRKVIEGKGMPIP 217 (248)
T ss_dssp EEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCST--TCEEEETTCSCBCS
T ss_pred EEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCC--CeEEEEcCCCCccC
Confidence 999999999999999999999998999887 45775 69999999999975
No 3
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=100.00 E-value=1.8e-38 Score=273.22 Aligned_cols=145 Identities=21% Similarity=0.401 Sum_probs=134.2
Q ss_pred CCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEEEE
Q 021128 134 GDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTV 213 (317)
Q Consensus 134 g~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V 213 (317)
+.|+.++|.|||||||+|+++++.+. .+|+.|+|.+++.+.++++|
T Consensus 2 ~~d~~~~l~islee~~~G~~k~i~i~----------------------------------~~c~~c~G~g~~~~~~~l~V 47 (181)
T 3agx_A 2 DPPVTHDLRVSLEEIYSGCTKKMKIS----------------------------------HKRLNPDGKSIRNEDKILTI 47 (181)
T ss_dssp ----CEEEEECHHHHHHCEEEEEEEE----------------------------------EEEECTTSSCEEEEEEEEEE
T ss_pred CCCEEEEEEEEHHHhcCCcEEEEEEe----------------------------------cccCCCCCceEEEEeEEEEE
Confidence 46899999999999999999999764 35889999999999999999
Q ss_pred EecCCCCCCCEEEEcccCCCCCCCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeC
Q 021128 214 DIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTK 293 (317)
Q Consensus 214 ~Ip~G~~~G~~i~~~g~G~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~ 293 (317)
.||||+++|++|+|+|+|++++++.+|||||+|++++|+.|+|+|+|||++++|||+||++|++++|+||||+.+.|+++
T Consensus 48 ~Ip~G~~~G~~ir~~G~G~~~~~g~~GDl~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~i~i~ 127 (181)
T 3agx_A 48 EVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFK 127 (181)
T ss_dssp EECTTCCTTCEEEETTCSCCCSSSCCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEEC
T ss_pred EECCCccCCcEEEEeeccccCCCCCcccEEEEEEEeccccceeeCCcEEEEEEcCHHHHhCCCEEEeECCCCCEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998999999
Q ss_pred CcccCCCCcEEEecCCccccc
Q 021128 294 VSMNMCFGTSFAMTKKRIEVL 314 (317)
Q Consensus 294 ~v~~~~~~~~~~~~~k~~~~~ 314 (317)
.++++ |+.++|+|||+|..
T Consensus 128 ~~t~~--g~~~rl~g~Gmp~~ 146 (181)
T 3agx_A 128 DVIRP--GMRRKVPGEGLPLP 146 (181)
T ss_dssp SCCCT--TCEEEETTCSCBCS
T ss_pred CccCC--CcEEEECCcCCCcC
Confidence 88886 69999999999975
No 4
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.2e-35 Score=255.40 Aligned_cols=144 Identities=30% Similarity=0.445 Sum_probs=130.6
Q ss_pred cCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEEE
Q 021128 133 KGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVT 212 (317)
Q Consensus 133 kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~ 212 (317)
++.|+++++.|||||||+|+++++.+.+.+. |+ .+++.+.++++
T Consensus 2 ~g~d~~~~l~islee~~~G~~k~i~~~~~~~--------------------------------c~----~g~~~~~~~l~ 45 (180)
T 2q2g_A 2 APRSHEVPLLVTLEELYLGKRKKIKVTRKRF--------------------------------IE----HKVRNEENIVE 45 (180)
T ss_dssp --CEEEEEEEECHHHHHHCEEEEEEEEEEEE--------------------------------ET----TEEEEEEEEEE
T ss_pred CCCCEEEEEEeeHHHhcCCcEEEEEEeEEEe--------------------------------cC----CceEEeeEEEE
Confidence 4789999999999999999999999886543 21 15567788999
Q ss_pred EEecCCCCCCCEEEEcccCCC-CCCCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEe
Q 021128 213 VDIEKGMQDGQEVVFYEDGEP-KIDGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDIS 291 (317)
Q Consensus 213 V~Ip~G~~~G~~i~~~g~G~~-~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~ 291 (317)
|.||||+++|++|+|+|+|++ .+++.+|||||+|+++||+.|+|+|+|||++++|||+||++|++++|+||||+.+.|+
T Consensus 46 V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~v~i~ 125 (180)
T 2q2g_A 46 VEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQIP 125 (180)
T ss_dssp EEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCEEEEEECTTCCEEEEE
T ss_pred EEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEEEEEcCHHHHhCCCEEEeeCCCCCEEEEE
Confidence 999999999999999999999 6788899999999999999999999999999999999999999999999999989999
Q ss_pred eCCcccCCCCcEEEecCCccccc
Q 021128 292 TKVSMNMCFGTSFAMTKKRIEVL 314 (317)
Q Consensus 292 ~~~v~~~~~~~~~~~~~k~~~~~ 314 (317)
++.++++ |+.++|+|||+|..
T Consensus 126 ip~~t~~--g~~~rl~g~Gmp~~ 146 (180)
T 2q2g_A 126 IKEIVNP--KTRKIVPNEGMPIK 146 (180)
T ss_dssp ECSCCCT--TCEEEETTCSCBCS
T ss_pred CCCccCC--CEEEEECCcCCCcC
Confidence 9988886 69999999999964
No 5
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=100.00 E-value=5.3e-34 Score=242.99 Aligned_cols=139 Identities=22% Similarity=0.402 Sum_probs=125.2
Q ss_pred CceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEEEEE
Q 021128 135 DDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVD 214 (317)
Q Consensus 135 ~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~ 214 (317)
+|+++++.|||||||+|+++++.+.+.. +. |.+ +.++++|.
T Consensus 1 ~d~~~~l~islee~~~G~~k~i~~~~~~------------------------------------~~--G~~-~~~~l~V~ 41 (170)
T 1c3g_A 1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG------------------------------------PH--GAS-EKTQIDIQ 41 (170)
T ss_dssp CEEEEEEEECHHHHHHTCEEEEEEEEEE------------------------------------TT--TEE-EEEEEEEE
T ss_pred CCEEEEEEeEHHHhhCCcEEEEEEEEec------------------------------------CC--CcE-EeEEEEEE
Confidence 4789999999999999999999887531 11 223 56889999
Q ss_pred ecCCCCCCCEEEEcccCCC-CCCCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeC
Q 021128 215 IEKGMQDGQEVVFYEDGEP-KIDGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTK 293 (317)
Q Consensus 215 Ip~G~~~G~~i~~~g~G~~-~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~ 293 (317)
||||+++|++|+|+|+|++ .+++.+|||||+|+++||+.|+|+|+|||++++|||+||+||++++|+||||+.+.|+++
T Consensus 42 Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~~i~i~ 121 (170)
T 1c3g_A 42 LKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRV 121 (170)
T ss_dssp CCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEEEECCBHHHHHHCEEEEEECSSSCEEEEEES
T ss_pred eCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeEEEEcCHHHHhCCCeEEeeCCCCCEEEEECC
Confidence 9999999999999999995 467789999999999999999999999999999999999999999999999998999999
Q ss_pred CcccCCCCcEEEecCCccccc
Q 021128 294 VSMNMCFGTSFAMTKKRIEVL 314 (317)
Q Consensus 294 ~v~~~~~~~~~~~~~k~~~~~ 314 (317)
.++++ |+.++|+|||+|..
T Consensus 122 ~~t~~--g~~~rl~g~G~p~~ 140 (170)
T 1c3g_A 122 QPVQP--SQTSTYPGQGMPTP 140 (170)
T ss_dssp SCCCT--TCEEECTTCSCBCS
T ss_pred CccCC--CcEEEEeCCCCCcC
Confidence 88886 69999999999964
No 6
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.91 E-value=1.7e-25 Score=175.03 Aligned_cols=98 Identities=49% Similarity=0.956 Sum_probs=70.7
Q ss_pred CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCCC
Q 021128 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 103 (317)
Q Consensus 24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~ 103 (317)
..|||+||||+++||.+|||+|||+|++++|||+++.+++++++|++|++||++|+||.+|+.||++|++++.....+++
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~~~~~~ 81 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGG 81 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCSCC----
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcccCcCCC
Confidence 57999999999999999999999999999999999876668899999999999999999999999999998775422111
Q ss_pred CCCCcccChhhhhhhccCC
Q 021128 104 RGGGMGVNIQDIFSSFFGG 122 (317)
Q Consensus 104 ~~~~~~~~~~d~F~~~fg~ 122 (317)
+.++ +.++.++|+++|+.
T Consensus 82 ~~~~-~~~~~~~f~~~f~~ 99 (103)
T 1bq0_A 82 GFGG-GADFSDIFGDVFGD 99 (103)
T ss_dssp -------------------
T ss_pred CCCC-CCCHHHHHHHHHHh
Confidence 1111 12456777777753
No 7
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.88 E-value=2.9e-23 Score=153.75 Aligned_cols=73 Identities=62% Similarity=1.056 Sum_probs=68.1
Q ss_pred CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCcccccc
Q 021128 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQ 97 (317)
Q Consensus 24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~ 97 (317)
+.|||+||||+++||.++||+|||++++++|||++++.. +.+.|++|++||++|+||.+|+.||++|.+++..
T Consensus 2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~-~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 74 (77)
T 1hdj_A 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG-AEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG 74 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTT-HHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCCS
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcc-HHHHHHHHHHHHHHHCCHHHHHHHHHHccccccc
Confidence 579999999999999999999999999999999998644 7899999999999999999999999999987653
No 8
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=3.8e-23 Score=157.06 Aligned_cols=77 Identities=48% Similarity=0.822 Sum_probs=70.4
Q ss_pred ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccc
Q 021128 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQH 98 (317)
Q Consensus 21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~ 98 (317)
.....|||+||||+++|+.+|||+|||+|++++|||+++. +++.++|++|++||++|+||.+|+.||++|.+++..+
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~ 79 (88)
T 2ctr_A 3 SGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS-PDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSG 79 (88)
T ss_dssp SCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS-HHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTCS
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccccC
Confidence 3456899999999999999999999999999999999985 4588999999999999999999999999999877643
No 9
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=4e-23 Score=153.75 Aligned_cols=74 Identities=46% Similarity=0.814 Sum_probs=69.0
Q ss_pred ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccc
Q 021128 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEG 94 (317)
Q Consensus 21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~ 94 (317)
.....|||+||||+++|+.++||+|||++++++|||+++.++++.++|++|++||++|+||.+|+.||++|..+
T Consensus 3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 76 (79)
T 2dn9_A 3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP 76 (79)
T ss_dssp SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence 35578999999999999999999999999999999999876678999999999999999999999999999764
No 10
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.87 E-value=4.1e-23 Score=158.15 Aligned_cols=75 Identities=41% Similarity=0.827 Sum_probs=69.3
Q ss_pred ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccc
Q 021128 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQH 98 (317)
Q Consensus 21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~ 98 (317)
++...|||+||||+++|+.+|||+|||+|++++|||+++.+. ++|++|++||++|+||.+|+.||++|.+++..+
T Consensus 4 m~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~---~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~ 78 (92)
T 2o37_A 4 MVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDT---EKFKEISEAFEILNDPQKREIYDQYGLEAARSG 78 (92)
T ss_dssp CCSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCH---HHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHTT
T ss_pred cccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChH---HHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhcc
Confidence 456789999999999999999999999999999999997654 699999999999999999999999999887754
No 11
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.6e-22 Score=151.61 Aligned_cols=75 Identities=59% Similarity=0.927 Sum_probs=68.6
Q ss_pred ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHhHhhhCCccccccccccCcccc
Q 021128 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNE-EANKRFAEINNAYEVLSDSETRNIYDTYGEEGL 95 (317)
Q Consensus 21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~-~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~ 95 (317)
+....|||+||||+++|+.+|||+|||++++++|||+++... .+.++|++|++||++|+||.+|+.||++|+.++
T Consensus 5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 80 (82)
T 2ej7_A 5 SSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS 80 (82)
T ss_dssp CSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 345689999999999999999999999999999999998653 588999999999999999999999999998754
No 12
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.5e-22 Score=154.99 Aligned_cols=76 Identities=54% Similarity=0.836 Sum_probs=69.8
Q ss_pred cCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHhHhhhCCccccccccccCcccccc
Q 021128 22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQ 97 (317)
Q Consensus 22 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~ 97 (317)
....|||+||||+++|+.+|||+|||+|+++||||+++.+ +.++++|++|++||++|+||.+|+.||++|.+++..
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 82 (92)
T 2dmx_A 6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRA 82 (92)
T ss_dssp CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCC
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence 3467999999999999999999999999999999999865 358899999999999999999999999999887754
No 13
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.86 E-value=2.2e-22 Score=147.50 Aligned_cols=70 Identities=53% Similarity=0.905 Sum_probs=62.7
Q ss_pred ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCcc
Q 021128 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEE 93 (317)
Q Consensus 21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~ 93 (317)
+....|||+||||+++|+.++||+|||++++++|||++++. .+.|++|++||++|+||.+|+.||++|++
T Consensus 4 m~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 73 (73)
T 2och_A 4 MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSDEKKRQIYDQGGEE 73 (73)
T ss_dssp --CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTSHHHHHHHHHTC--
T ss_pred ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCCHHHHHHHHhcCCC
Confidence 45678999999999999999999999999999999999765 47999999999999999999999999864
No 14
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2e-22 Score=149.63 Aligned_cols=73 Identities=51% Similarity=0.852 Sum_probs=67.6
Q ss_pred ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccc
Q 021128 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEG 94 (317)
Q Consensus 21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~ 94 (317)
.....|||+||||+++|+.+|||+|||++++++|||+++.. .+.+.|++|++||++|+||.+|+.||++|.++
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 75 (78)
T 2ctp_A 3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAP-GATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP 75 (78)
T ss_dssp CSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSH-HHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-cHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 45678999999999999999999999999999999999764 48899999999999999999999999999764
No 15
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2.9e-22 Score=155.53 Aligned_cols=70 Identities=40% Similarity=0.674 Sum_probs=65.7
Q ss_pred ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCcccccccccc
Q 021128 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTY 90 (317)
Q Consensus 21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~ 90 (317)
.+...|||+||||+++|+.+|||+|||+|+++||||+++.++++.++|++|++||++|+||.+|+.||++
T Consensus 13 ~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~ 82 (99)
T 2yua_A 13 SYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRG 82 (99)
T ss_dssp SSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred CCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence 3557899999999999999999999999999999999987777899999999999999999999999984
No 16
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1e-22 Score=161.63 Aligned_cols=76 Identities=30% Similarity=0.486 Sum_probs=70.4
Q ss_pred ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccc
Q 021128 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLK 96 (317)
Q Consensus 21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~ 96 (317)
.+...|||+||||+++|+.+|||+|||+|++++|||++++++++.++|++|++||++|+||.+|+.||++|.+++.
T Consensus 16 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~ 91 (112)
T 2ctq_A 16 SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMS 91 (112)
T ss_dssp CCCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC
Confidence 4456899999999999999999999999999999999987667899999999999999999999999999987654
No 17
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=3.4e-22 Score=157.78 Aligned_cols=77 Identities=53% Similarity=0.874 Sum_probs=71.5
Q ss_pred ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCcccccc
Q 021128 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQ 97 (317)
Q Consensus 21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~ 97 (317)
.....|||+||||+++|+.+|||+|||+|++++|||++++++++.++|++|++||++|+||.+|+.||++|..++..
T Consensus 13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~~ 89 (109)
T 2ctw_A 13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLYV 89 (109)
T ss_dssp TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHHH
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccccccc
Confidence 45578999999999999999999999999999999999877778999999999999999999999999999887643
No 18
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.85 E-value=3.9e-22 Score=154.64 Aligned_cols=73 Identities=60% Similarity=1.008 Sum_probs=65.5
Q ss_pred CccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHhHhhhCCccccccccccCcccccc
Q 021128 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQ 97 (317)
Q Consensus 25 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~ 97 (317)
.|||+||||+++|+.+|||+|||++++++|||+++.. +.+.++|++|++||++|+||.+|+.||++|.+++..
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~~ 75 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTG 75 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC----
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence 6899999999999999999999999999999999865 358899999999999999999999999999887754
No 19
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=5.1e-22 Score=150.80 Aligned_cols=73 Identities=47% Similarity=0.723 Sum_probs=67.1
Q ss_pred ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccc
Q 021128 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEG 94 (317)
Q Consensus 21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~ 94 (317)
.....|||+||||+++|+.+|||+|||++++++|||++++. .+.++|++|++||++|+||.+|+.||++|+.+
T Consensus 13 ~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 13 SALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDP-GAEDRFIQISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp CSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCST-THHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred ccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCh-hHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence 34578999999999999999999999999999999999864 48899999999999999999999999999753
No 20
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.82 E-value=3.9e-21 Score=147.64 Aligned_cols=71 Identities=35% Similarity=0.644 Sum_probs=64.7
Q ss_pred cCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc------hHHHHHHHHHHHhHhhhCCccccccccccCc
Q 021128 22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN------EEANKRFAEINNAYEVLSDSETRNIYDTYGE 92 (317)
Q Consensus 22 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~------~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~ 92 (317)
+...|||+||||+++|+.+|||+|||+|+++||||+++.+ ..+.++|++|++||++|+||.+|+.||.+..
T Consensus 13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 89 (94)
T 1wjz_A 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89 (94)
T ss_dssp SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 4578999999999999999999999999999999998742 4588999999999999999999999998654
No 21
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.82 E-value=6.4e-21 Score=166.81 Aligned_cols=74 Identities=49% Similarity=0.864 Sum_probs=69.5
Q ss_pred CccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccc
Q 021128 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQH 98 (317)
Q Consensus 25 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~ 98 (317)
+|||++|||+++|+.+|||+|||++|+++|||++++++++.++|++|++||++|+||.+|+.||++|++++...
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~ 75 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN 75 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCTT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccccc
Confidence 58999999999999999999999999999999998777789999999999999999999999999999877543
No 22
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.80 E-value=1.3e-20 Score=148.75 Aligned_cols=73 Identities=37% Similarity=0.590 Sum_probs=66.7
Q ss_pred ccCCCccchhcCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC---chHHHHHHHHHHHhHhhhCCccccccccccCcc
Q 021128 21 VIAGKSYYEVLQVPRGA-SDEQIKRAYRKLALKYHPDKNQG---NEEANKRFAEINNAYEVLSDSETRNIYDTYGEE 93 (317)
Q Consensus 21 ~~~~~~~Y~iLgv~~~a-s~~eIk~ayr~la~~~hPd~~~~---~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~ 93 (317)
.....|||+||||+++| +.+|||+|||++++++|||++++ .+.+.++|++|++||++|+||.+|+.||+++..
T Consensus 11 ~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~ 87 (109)
T 2qsa_A 11 YCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH 87 (109)
T ss_dssp TTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred HcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence 34578999999999999 99999999999999999999986 345889999999999999999999999998864
No 23
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-19 Score=137.80 Aligned_cols=65 Identities=31% Similarity=0.468 Sum_probs=59.8
Q ss_pred ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCcccccc
Q 021128 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNI 86 (317)
Q Consensus 21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~ 86 (317)
+....|||+||||+++|+.+|||+|||+|+++||||++++.. +.++|++|++||++|+||.+|+.
T Consensus 23 ~~~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~-~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 23 IRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPG-SEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp HHTCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTT-HHHHHHHHHHHHHHHHHHHCCSC
T ss_pred HhcCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcc-HHHHHHHHHHHHHHHCCcccccC
Confidence 445799999999999999999999999999999999998644 78999999999999999999874
No 24
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.76 E-value=3e-19 Score=149.55 Aligned_cols=72 Identities=33% Similarity=0.596 Sum_probs=65.3
Q ss_pred ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch------HHHHHHHHHHHhHhhhCCccccccccccCc
Q 021128 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNE------EANKRFAEINNAYEVLSDSETRNIYDTYGE 92 (317)
Q Consensus 21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~------~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~ 92 (317)
.+...|||+||||+++|+.++||+|||+|++++|||+++.+. .|.++|++|++||++|+||.+|+.||..+.
T Consensus 6 ~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~ 83 (155)
T 2l6l_A 6 QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC 83 (155)
T ss_dssp CCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred cCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 455789999999999999999999999999999999997652 367999999999999999999999998664
No 25
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.74 E-value=1.3e-19 Score=143.53 Aligned_cols=65 Identities=22% Similarity=0.425 Sum_probs=60.9
Q ss_pred CCccchhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCc
Q 021128 24 GKSYYEVLQVPRGASD--EQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGE 92 (317)
Q Consensus 24 ~~~~Y~iLgv~~~as~--~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~ 92 (317)
..+||+||||+++|+. ++||+|||+||+++|||++++ .++|++|++||++|+||.+|+.||.+|.
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~~~~ 73 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence 4689999999999999 999999999999999999975 3689999999999999999999999885
No 26
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.74 E-value=6e-19 Score=130.95 Aligned_cols=67 Identities=22% Similarity=0.410 Sum_probs=59.8
Q ss_pred CCccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCcccc
Q 021128 24 GKSYYEVLQVPRG--ASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGL 95 (317)
Q Consensus 24 ~~~~Y~iLgv~~~--as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~ 95 (317)
..++|+||||+++ |+.++||+|||+||+++|||++++ .++|++|++||++|+|+.+|.. |.||..++
T Consensus 10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~~~~r~~-~~~g~~~~ 78 (79)
T 1faf_A 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLR-MNLGGTGF 78 (79)
T ss_dssp HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHT-TCCSSCCC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhhHHHHHH-HhcCCccC
Confidence 3689999999999 999999999999999999999864 3789999999999999999988 56877653
No 27
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.73 E-value=1.3e-19 Score=153.19 Aligned_cols=66 Identities=21% Similarity=0.399 Sum_probs=58.8
Q ss_pred CCCccchhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCc
Q 021128 23 AGKSYYEVLQVPRGAS--DEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGE 92 (317)
Q Consensus 23 ~~~~~Y~iLgv~~~as--~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~ 92 (317)
...|||++|||+++|+ .+|||+|||++|+++|||+++++ ++|++|++||++|+||.+|+.||+||.
T Consensus 9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~----e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE----EKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CC----TTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCH----HHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 3579999999999999 69999999999999999998753 689999999999999999999999996
No 28
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.73 E-value=9.2e-19 Score=132.41 Aligned_cols=66 Identities=27% Similarity=0.346 Sum_probs=59.1
Q ss_pred cCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHhHhhhCCccccccc
Q 021128 22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRNIY 87 (317)
Q Consensus 22 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~Y 87 (317)
....++|+||||+++||.+|||+|||+||++||||+++++ +.|+++|++|++||++|+|...|..+
T Consensus 13 ~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~~ 79 (88)
T 1iur_A 13 SILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQN 79 (88)
T ss_dssp SCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSSS
T ss_pred ccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3457899999999999999999999999999999999876 35889999999999999998887443
No 29
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.72 E-value=2.6e-18 Score=146.18 Aligned_cols=67 Identities=30% Similarity=0.536 Sum_probs=61.1
Q ss_pred ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchH---HHHHHHHHHHhHhhhCCccccccc
Q 021128 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEE---ANKRFAEINNAYEVLSDSETRNIY 87 (317)
Q Consensus 21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~---~~~~f~~i~~Ay~~L~d~~~r~~Y 87 (317)
.+...|||++|||+++|+.+|||+|||++++++|||++++... |+++|++|++||++|+|+.+|+.|
T Consensus 113 l~~~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 113 LWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp SCTTCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred hcCccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 3444799999999999999999999999999999999976542 789999999999999999999987
No 30
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.72 E-value=2.3e-18 Score=130.72 Aligned_cols=57 Identities=30% Similarity=0.501 Sum_probs=52.3
Q ss_pred CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHhHhhhCC
Q 021128 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNE---EANKRFAEINNAYEVLSD 80 (317)
Q Consensus 24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~---~~~~~f~~i~~Ay~~L~d 80 (317)
+.++|++|||+++||.+|||+|||++|+++|||+|++++ .|+++|++|++||++|.+
T Consensus 32 ~~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp TCCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 369999999999999999999999999999999998654 378999999999999975
No 31
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.70 E-value=4.3e-18 Score=145.01 Aligned_cols=67 Identities=28% Similarity=0.491 Sum_probs=60.9
Q ss_pred CCCccchhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHhHhhhCCccccccccc
Q 021128 23 AGKSYYEVLQVPRGAS--DEQIKRAYRKLALKYHPDKNQGNEE-----ANKRFAEINNAYEVLSDSETRNIYDT 89 (317)
Q Consensus 23 ~~~~~Y~iLgv~~~as--~~eIk~ayr~la~~~hPd~~~~~~~-----~~~~f~~i~~Ay~~L~d~~~r~~YD~ 89 (317)
...|||++|||+++|+ .++||+|||+++++||||++++... |.++|+.|++||++|+||.+|+.||.
T Consensus 2 ~~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~ 75 (174)
T 3hho_A 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLL 75 (174)
T ss_dssp --CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred CCCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHH
Confidence 3579999999999998 9999999999999999999876543 67899999999999999999999997
No 32
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.69 E-value=3e-18 Score=176.96 Aligned_cols=78 Identities=46% Similarity=0.792 Sum_probs=40.9
Q ss_pred ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccc
Q 021128 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQH 98 (317)
Q Consensus 21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~ 98 (317)
...+.|||++|||+++||.+|||+|||+||++||||++++++++.++|++|++||++|+||.+|+.||+||++++...
T Consensus 17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~~ 94 (780)
T 3apo_A 17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN 94 (780)
T ss_dssp ------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--------
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccccC
Confidence 445789999999999999999999999999999999998777789999999999999999999999999999887653
No 33
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.68 E-value=1.1e-17 Score=130.91 Aligned_cols=63 Identities=21% Similarity=0.353 Sum_probs=54.8
Q ss_pred hccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---ch----HHHHHHHHHHHhHhhhCCccc
Q 021128 20 NVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQG---NE----EANKRFAEINNAYEVLSDSET 83 (317)
Q Consensus 20 ~~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~---~~----~~~~~f~~i~~Ay~~L~d~~~ 83 (317)
..+.+.|||++|+++. ||.+|||+|||++|+++|||++++ ++ .|+++|++|++||++|+|+..
T Consensus 36 ~l~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~~ 105 (106)
T 3ag7_A 36 ILWSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLGP 105 (106)
T ss_dssp TSCTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HhcccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCccc
Confidence 4455789999999996 999999999999999999999863 11 378999999999999999863
No 34
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.67 E-value=1.2e-17 Score=141.78 Aligned_cols=67 Identities=24% Similarity=0.390 Sum_probs=61.1
Q ss_pred CccchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHhHhhhCCccccccccccC
Q 021128 25 KSYYEVLQVPRGA--SDEQIKRAYRKLALKYHPDKNQGNE-----EANKRFAEINNAYEVLSDSETRNIYDTYG 91 (317)
Q Consensus 25 ~~~Y~iLgv~~~a--s~~eIk~ayr~la~~~hPd~~~~~~-----~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G 91 (317)
.|||++|||+++| |.++||+|||+|+++||||++++.+ .|.++|+.|++||++|+||.+|+.||...
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 74 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL 74 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence 3899999999999 9999999999999999999998653 25689999999999999999999999754
No 35
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.67 E-value=2.3e-17 Score=144.06 Aligned_cols=68 Identities=21% Similarity=0.379 Sum_probs=61.0
Q ss_pred cCCCccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHhHhhhCCccccccccc
Q 021128 22 IAGKSYYEVLQVPRG--ASDEQIKRAYRKLALKYHPDKNQGNE-----EANKRFAEINNAYEVLSDSETRNIYDT 89 (317)
Q Consensus 22 ~~~~~~Y~iLgv~~~--as~~eIk~ayr~la~~~hPd~~~~~~-----~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 89 (317)
....|||++|||+++ ++.++||+|||+|++++|||+++++. .|.++|++|++||++|+||.+|+.||.
T Consensus 40 ~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~ 114 (207)
T 3bvo_A 40 DPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL 114 (207)
T ss_dssp CTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred CCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 346899999999996 79999999999999999999997642 256889999999999999999999995
No 36
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.9e-17 Score=118.72 Aligned_cols=60 Identities=23% Similarity=0.361 Sum_probs=53.0
Q ss_pred cCCCccchhcCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccc
Q 021128 22 IAGKSYYEVLQVPR-GASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRN 85 (317)
Q Consensus 22 ~~~~~~Y~iLgv~~-~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~ 85 (317)
+...++|+||||++ +||.+|||+|||+|++++|||++++ + +.|++|++||++|+|+..|+
T Consensus 11 m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~-~---~~f~~i~~Aye~L~~~~~rk 71 (71)
T 2guz_A 11 MNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS-P---FLATKINEAKDFLEKRGISK 71 (71)
T ss_dssp CCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC-H---HHHHHHHHHHHHHHHHCCCC
T ss_pred CCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-H---HHHHHHHHHHHHHhhhhhcC
Confidence 33468999999999 7999999999999999999999753 2 69999999999999987764
No 37
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=99.63 E-value=5.7e-16 Score=121.85 Aligned_cols=62 Identities=19% Similarity=0.286 Sum_probs=57.3
Q ss_pred eCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCcccc
Q 021128 249 APHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEV 313 (317)
Q Consensus 249 ~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~~ 313 (317)
+||+.|+|+|+||+++++|||.||++|++++|+||||. +.|+++..+++ |+.++|+|+|+|.
T Consensus 2 kph~~F~R~G~DL~~~~~Isl~eAl~G~~i~v~tldG~-~~v~ip~g~~~--G~~~rl~G~G~p~ 63 (109)
T 3i38_A 2 NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKES-ILLTVPPGSQA--GQRLRIKGKGLVS 63 (109)
T ss_dssp --CCCCEEETTEEEEEEEECHHHHHHCEEEEECCSSSC-EEEEECTTCCT--TCEEEETTCSCBC
T ss_pred CCCCCeEEECCEEEEEEEcCHHHHhCCCEEEEEcCCCC-EEEeeCCCcCc--CeEEEECCccCCC
Confidence 69999999999999999999999999999999999995 99999988876 6999999999996
No 38
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.62 E-value=8.1e-17 Score=137.74 Aligned_cols=68 Identities=25% Similarity=0.483 Sum_probs=60.4
Q ss_pred hccCCCccchhc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCcccccccccc
Q 021128 20 NVIAGKSYYEVL------QVPR-GASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTY 90 (317)
Q Consensus 20 ~~~~~~~~Y~iL------gv~~-~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~ 90 (317)
......|||++| |+++ +||.++||+|||+|++++|||++++ +.++|++|++||++|+||.+|+.||..
T Consensus 6 ~~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~~ 80 (181)
T 3uo3_A 6 QRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLK 80 (181)
T ss_dssp -CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 344568999999 4665 9999999999999999999999986 568899999999999999999999983
No 39
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.2e-14 Score=116.40 Aligned_cols=60 Identities=20% Similarity=0.375 Sum_probs=54.0
Q ss_pred CeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeC--CcccCCCCcEEEecCCccccc
Q 021128 253 RFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTK--VSMNMCFGTSFAMTKKRIEVL 314 (317)
Q Consensus 253 ~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~--~v~~~~~~~~~~~~~k~~~~~ 314 (317)
.|+|+|+||+++++|+|++|++|++++|+||||+.+.|+++ +|+++ |+.++|+|+|+|..
T Consensus 1 ~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~v~ip~g~v~~~--G~~~rl~G~Gmp~~ 62 (121)
T 1xao_A 1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAP--GMRKVIEGKGMPIP 62 (121)
T ss_dssp CCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECTTSCCCT--TCEEEETTCSCC--
T ss_pred CceEECCeEEEEEEcCHHHHhCCCEEEEecCCCCEEEEEeCCCCeeCC--CcEEEECCCCCCCC
Confidence 49999999999999999999999999999999998999987 45775 79999999999964
No 40
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.11 E-value=6.7e-11 Score=111.71 Aligned_cols=68 Identities=46% Similarity=0.758 Sum_probs=58.2
Q ss_pred cCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHhHhhhCCccccccccc
Q 021128 22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN---EEANKRFAEINNAYEVLSDSETRNIYDT 89 (317)
Q Consensus 22 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~---~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 89 (317)
....++|.+||+.++++.++|+++|+++++++|||+.+.+ ..++++|++|++||++|+||++|..||+
T Consensus 379 ~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp HHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred ccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 4467999999999999999999999999999999999865 3588999999999999999999999996
No 41
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=99.08 E-value=2.4e-10 Score=89.61 Aligned_cols=75 Identities=17% Similarity=0.184 Sum_probs=62.9
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
++|.|++++++|||.||+.|++++|..- .. .+
T Consensus 9 R~G~DL~~~~~Isl~eAl~G~~i~v~tl-----------------------------------------------dG-~~ 40 (109)
T 3i38_A 9 IVGHNLEIVLPLAPWEAALGAKVTVPTL-----------------------------------------------KE-SI 40 (109)
T ss_dssp EETTEEEEEEEECHHHHHHCEEEEECCS-----------------------------------------------SS-CE
T ss_pred EECCEEEEEEEcCHHHHhCCCEEEEEcC-----------------------------------------------CC-CE
Confidence 4689999999999999999998777321 11 47
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCCCCCccEEEEEEEeCCCCee
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFR 255 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDL~v~i~v~~h~~F~ 255 (317)
+|.||+|+++|++++++|+|.... +..|||||+++|.-.+...
T Consensus 41 ~v~ip~g~~~G~~~rl~G~G~p~~-~~~GDL~v~~~V~~P~~Ls 83 (109)
T 3i38_A 41 LLTVPPGSQAGQRLRIKGKGLVSK-THTGDLFAVIKIVMPTKPD 83 (109)
T ss_dssp EEEECTTCCTTCEEEETTCSCBCS-SCBCCEEEEEEECCCSSCC
T ss_pred EEeeCCCcCcCeEEEECCccCCCC-CCCcCEEEEEEEECCCCCC
Confidence 899999999999999999999864 4789999999998766544
No 42
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=2.2e-11 Score=94.76 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=59.9
Q ss_pred CCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc-----------cccCccceEEEEEecCceeEEEe---------
Q 021128 134 GDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK-----------RRCNCRNEVYHKQIGPGMFQQMT--------- 192 (317)
Q Consensus 134 g~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~-----------~~C~g~G~~~~~~~~~g~~~~~~--------- 192 (317)
|.|+.++|.|||||||+|+++++.+.+. .|..|.|+ +.|+|.|.+...+ ++ +++..
T Consensus 1 ~~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~-G~--~~~~~~C~~C~G~G 77 (104)
T 2ctt_A 1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT-GP--FVMRSTCRRCGGRG 77 (104)
T ss_dssp CCCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE-TT--EEEEEECSSSSSSS
T ss_pred CCceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe-CC--EEEEEECCcCCCcc
Confidence 4578899999999999999999998875 57788774 4578888765443 43 33221
Q ss_pred ---eeccccCCCceEEeeCEEEEEEe
Q 021128 193 ---EQVCDQCQNVKYEREGYFVTVDI 215 (317)
Q Consensus 193 ---~~~C~~C~G~g~~~~~~~~~V~I 215 (317)
+++|+.|+|.|++.++++|+|++
T Consensus 78 ~~i~~~C~~C~G~G~v~~~k~l~V~~ 103 (104)
T 2ctt_A 78 SIIISPCVVCRGAGQAKQKKRSGPSS 103 (104)
T ss_dssp EECSSCCSSSSSCSEECCCCSSCCSC
T ss_pred eECCCcCCCCCCeeEEEEEEEEEEEc
Confidence 56899999999888888777654
No 43
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=99.01 E-value=9.5e-10 Score=87.79 Aligned_cols=80 Identities=23% Similarity=0.315 Sum_probs=62.8
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
++|.|+++++.|||.||+.|+++.|..- ....+
T Consensus 4 R~G~DL~~~~~Isl~eAllG~~i~v~tl-----------------------------------------------dG~~~ 36 (121)
T 1xao_A 4 RDGDDLVYEAEIDLLTAIAGGEFALEHV-----------------------------------------------SGDWL 36 (121)
T ss_dssp EETTEEEEEEEEEHHHHHHCEEEEEECT-----------------------------------------------TSCEE
T ss_pred EECCeEEEEEEcCHHHHhCCCEEEEecC-----------------------------------------------CCCEE
Confidence 4689999999999999999998777321 23458
Q ss_pred EEEecCC--CCCCCEEEEcccCCCCCCC-CCccEEEEEEEeCCCC--eeEeC
Q 021128 212 TVDIEKG--MQDGQEVVFYEDGEPKIDG-EPGDLKFRIRTAPHDR--FRREG 258 (317)
Q Consensus 212 ~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~GDL~v~i~v~~h~~--F~R~G 258 (317)
+|.||+| +++|++++++|+|....++ ..|||||++.|.-... +..+.
T Consensus 37 ~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V~~P~~~~ls~~q 88 (121)
T 1xao_A 37 KVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPENHFTSEEN 88 (121)
T ss_dssp EEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCCTTCSCHHH
T ss_pred EEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHH
Confidence 8999999 9999999999999886543 5799999999997665 54433
No 44
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.86 E-value=1.8e-09 Score=76.26 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=45.5
Q ss_pred CccchhcCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCC
Q 021128 25 KSYYEVLQVPRG---ASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSD 80 (317)
Q Consensus 25 ~~~Y~iLgv~~~---as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d 80 (317)
.+-|.||||+++ ++.++|++|||+|....|||+..+. .....|++|++.|..
T Consensus 4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~----yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSF----YLQSKVYRAAERLKW 58 (65)
T ss_dssp HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHHHHH
Confidence 356899999999 9999999999999999999998654 467789999999864
No 45
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=98.69 E-value=4.1e-08 Score=83.71 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=62.9
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
++|.|++++++|||.||+.|++++|..- ....+
T Consensus 90 R~G~DL~~~~~Isl~eAllG~~i~v~tl-----------------------------------------------dG~~~ 122 (181)
T 3agx_A 90 RDGSDVIYPARISLREALCGCTVNVPTL-----------------------------------------------DGRTI 122 (181)
T ss_dssp EETTEEEEEEEEEHHHHHHCEEEEEECT-----------------------------------------------TSCEE
T ss_pred eeCCcEEEEEEcCHHHHhCCCEEEeECC-----------------------------------------------CCCEE
Confidence 4689999999999999999998877321 12368
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCC--CCCccEEEEEEEeCCCCe
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKID--GEPGDLKFRIRTAPHDRF 254 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~--~~~GDL~v~i~v~~h~~F 254 (317)
+|.||+|+++|++++++|+|....+ +..|||||++.|.-...+
T Consensus 123 ~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~l 167 (181)
T 3agx_A 123 PVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERI 167 (181)
T ss_dssp EEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSCC
T ss_pred EEECCCccCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCC
Confidence 8999999999999999999987543 457999999999866544
No 46
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=98.66 E-value=6.2e-08 Score=82.52 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=62.6
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
+.|.|++++++|||.||+.|++++|..- ....+
T Consensus 90 R~G~DL~~~~~Isl~eAllG~~i~v~tl-----------------------------------------------dG~~v 122 (180)
T 2q2g_A 90 RDDCHLIMKVTIPLVRALTGFTCPVTTL-----------------------------------------------DNRNL 122 (180)
T ss_dssp EETTEEEEEEEEEHHHHHHCEEEEEECT-----------------------------------------------TCCEE
T ss_pred EcCCEEEEEEEcCHHHHhCCCEEEeeCC-----------------------------------------------CCCEE
Confidence 4689999999999999999998877321 12268
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCC--CCCccEEEEEEEeCCCCe
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKID--GEPGDLKFRIRTAPHDRF 254 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~--~~~GDL~v~i~v~~h~~F 254 (317)
+|.||+|+++|++++++|+|....+ +..|||||+++|.-...+
T Consensus 123 ~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~L 167 (180)
T 2q2g_A 123 QIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSL 167 (180)
T ss_dssp EEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCSCC
T ss_pred EEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCC
Confidence 8999999999999999999987543 457999999999866543
No 47
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=98.65 E-value=4.9e-08 Score=82.42 Aligned_cols=76 Identities=18% Similarity=0.272 Sum_probs=62.6
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
+.|.|++++++|||.||+.|++++|..- ....+
T Consensus 84 R~G~DL~~~~~Isl~eAllG~~~~v~tl-----------------------------------------------dG~~~ 116 (170)
T 1c3g_A 84 RDGDDLIYTLPLSFKESLLGFSKTIQTI-----------------------------------------------DGRTL 116 (170)
T ss_dssp EETTEEEEEECCBHHHHHHCEEEEEECS-----------------------------------------------SSCEE
T ss_pred EeCCcEeEEEEcCHHHHhCCCeEEeeCC-----------------------------------------------CCCEE
Confidence 4689999999999999999998877421 22358
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCC--CCCccEEEEEEEeCCCCe
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKID--GEPGDLKFRIRTAPHDRF 254 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~--~~~GDL~v~i~v~~h~~F 254 (317)
+|.||+|+++|++++++|+|....+ +..|||||++.|.-.+.+
T Consensus 117 ~i~i~~~t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~~L 161 (170)
T 1c3g_A 117 PLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISL 161 (170)
T ss_dssp EEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSC
T ss_pred EEECCCccCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCCCC
Confidence 8999999999999999999987543 356999999999866543
No 48
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=98.64 E-value=3.9e-08 Score=87.97 Aligned_cols=81 Identities=22% Similarity=0.311 Sum_probs=62.4
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
++|.|++++++|||.||+.|.+++|..- ....+
T Consensus 159 R~G~DL~~~~~Isl~eAllG~~i~v~tl-----------------------------------------------dG~~~ 191 (248)
T 1nlt_A 159 RDGDDLVYEAEIDLLTAIAGGEFALEHV-----------------------------------------------SGDWL 191 (248)
T ss_dssp EETTEEEEEEEEEHHHHHHCBCCEEECS-----------------------------------------------SSCEE
T ss_pred eeCCEEEEEEEeCHHHHhcCCEEEEeCC-----------------------------------------------CCCEE
Confidence 5689999999999999999998888421 23468
Q ss_pred EEEecCC--CCCCCEEEEcccCCCCCCC-CCccEEEEEEEeCCCC--eeEeCC
Q 021128 212 TVDIEKG--MQDGQEVVFYEDGEPKIDG-EPGDLKFRIRTAPHDR--FRREGN 259 (317)
Q Consensus 212 ~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~GDL~v~i~v~~h~~--F~R~G~ 259 (317)
+|.||+| +++|++++++|+|....+. ..|||||++.|.-... +..+..
T Consensus 192 ~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~~~GDL~V~~~V~~P~~~~Ls~~q~ 244 (248)
T 1nlt_A 192 KVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEENL 244 (248)
T ss_dssp ECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEECCC---------
T ss_pred EEEeCCCCeeCCCeEEEEcCCCCccCCCCCcCCEEEEEEEECCCCCCCCHHHH
Confidence 8999999 9999999999999875433 5699999999996654 544433
No 49
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=98.42 E-value=3.1e-07 Score=85.32 Aligned_cols=75 Identities=17% Similarity=0.184 Sum_probs=61.8
Q ss_pred ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (317)
Q Consensus 132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (317)
+.|.|+.++++|+|.||+.|++++|..- .. .+
T Consensus 229 R~G~DL~~~~~Isl~eAllG~~v~VptL-----------------------------------------------dG-~v 260 (329)
T 3lz8_A 229 IVGHNLEIVLPLAPWEAALGAKVTVPTL-----------------------------------------------KE-SI 260 (329)
T ss_dssp EETTEEEEEEEECHHHHHHCEEEEECCS-----------------------------------------------SS-CE
T ss_pred EcCCcEEEEEECCHHHHcCCCeEEEECC-----------------------------------------------CC-CE
Confidence 4689999999999999999998877321 12 26
Q ss_pred EEEecCCCCCCCEEEEcccCCCCCCCCCccEEEEEEEeCCCCee
Q 021128 212 TVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFR 255 (317)
Q Consensus 212 ~V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDL~v~i~v~~h~~F~ 255 (317)
+|+||+|+++|++++|+|+|-... +..|||||++.|.-.+...
T Consensus 261 ~l~ip~gt~~g~~~rl~G~GmP~~-~~rGDL~v~~~V~~P~~l~ 303 (329)
T 3lz8_A 261 LLTVPPGSQAGQRLRIKGKGLVSK-THTGDLFAVIKIVMPTKPD 303 (329)
T ss_dssp EEEECTTCCTTCEEEETTCSCBCS-SCBCCEEEEEEECCCSSCC
T ss_pred EEEECCCCCCCCEEEEcCCCCCCC-CCCCCEEEEEEEECCCCCC
Confidence 899999999999999999998755 4679999999998665443
No 50
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=96.46 E-value=0.0015 Score=47.36 Aligned_cols=50 Identities=22% Similarity=0.381 Sum_probs=27.8
Q ss_pred CceeEEEeeee-eecCCCCc-----------cccCccceEEEEEecCceeEEEeeeccccCCCceEE
Q 021128 151 GGSLKVWREKN-VIKPAPGK-----------RRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYE 205 (317)
Q Consensus 151 G~~~~v~~~r~-v~~~c~g~-----------~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~ 205 (317)
|++++|.+.+. .|..|.|+ +.|+|.|.++..+ |+++ ....|+.|+|.|.+
T Consensus 1 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---g~~~--~~~~C~~C~G~G~~ 62 (79)
T 1exk_A 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ---GFFA--VQQTCPHCQGRGTL 62 (79)
T ss_dssp CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE---TTEE--EEEECTTTTTSSEE
T ss_pred CcEEEEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc---CCCE--EeeECcCCCCccEE
Confidence 34445555553 46667654 4588888876544 4443 23345555555543
No 51
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=92.10 E-value=0.14 Score=51.57 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=40.8
Q ss_pred HhhhccCCCccchhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhh
Q 021128 17 YALNVIAGKSYYEVLQVPRGASD--EQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEV 77 (317)
Q Consensus 17 ~~~~~~~~~~~Y~iLgv~~~as~--~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~ 77 (317)
..+.....+|||.+||++.++.. .+|++|||++|+..+++ .+++..|..|+.|
T Consensus 621 l~~~~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~--------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 621 LDWLKDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ--------RHRYTLVDMANKV 675 (681)
T ss_dssp HHHHTSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH--------HHHHHHHHHHHHH
T ss_pred HHHHHccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh--------HHHHHHHHHhccc
Confidence 34445667789999999777665 77999999999975544 3688888888875
No 52
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=89.64 E-value=0.12 Score=34.38 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=18.4
Q ss_pred ccCccceEEEEEecCceeEEEeeeccccCCCceEEeeC
Q 021128 171 RCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREG 208 (317)
Q Consensus 171 ~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~ 208 (317)
.|+|+|.++ .++|+.|+|.|++.+.
T Consensus 14 ~C~GsG~~i-------------~~~C~~C~G~G~v~~~ 38 (53)
T 3lcz_A 14 NCNGSGREE-------------PEPCPKCLGKGVILTA 38 (53)
T ss_dssp TTTTSCEET-------------TEECTTTTTSSEEECH
T ss_pred CCcccccCC-------------CCcCCCCCCcEEEEEE
Confidence 477777643 4689999999987653
No 53
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=78.35 E-value=0.79 Score=30.31 Aligned_cols=14 Identities=14% Similarity=0.287 Sum_probs=11.5
Q ss_pred eccccCCCceEEee
Q 021128 194 QVCDQCQNVKYERE 207 (317)
Q Consensus 194 ~~C~~C~G~g~~~~ 207 (317)
.+|+.|+|.|.+..
T Consensus 24 ~~C~~C~G~G~v~~ 37 (53)
T 2bx9_A 24 TPCPACSGKGVILT 37 (53)
T ss_dssp EECTTTTTSSEEEC
T ss_pred CCCccCCCCccEEE
Confidence 57999999987754
No 54
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=40.60 E-value=1.9 Score=43.35 Aligned_cols=30 Identities=3% Similarity=-0.273 Sum_probs=24.2
Q ss_pred EEeecccHHHHhcCceeEEEeeee-eecCCC
Q 021128 138 IVELDATLEDLYMGGSLKVWREKN-VIKPAP 167 (317)
Q Consensus 138 ~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~ 167 (317)
.+.+.++|+|++.|.++++.+.+. .|..|.
T Consensus 168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCH 198 (669)
T 3pmq_A 168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCH 198 (669)
T ss_dssp SCCCEEEEECSSSSCCCCCCCCCSHHHHHHH
T ss_pred eEEEEEEhHHhhCCCceEEEeccCCcCCCCC
Confidence 467889999999999999988875 466664
No 55
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=38.49 E-value=29 Score=24.44 Aligned_cols=55 Identities=15% Similarity=0.304 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCch--HHHHHHHHHHHhHhhhCCc-cccccccccCc
Q 021128 37 ASDEQIKRAYRKLALKYHPDKNQGNE--EANKRFAEINNAYEVLSDS-ETRNIYDTYGE 92 (317)
Q Consensus 37 as~~eIk~ayr~la~~~hPd~~~~~~--~~~~~f~~i~~Ay~~L~d~-~~r~~YD~~G~ 92 (317)
.-+..++.+|+.+.+...|....... ++...|..-. +|..+.++ .++.+|+.|=.
T Consensus 6 ~r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~-~fkav~~E~eR~~lFeeYi~ 63 (77)
T 2cqn_A 6 SGMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEP-AFEDITLESERKRIFKDFMH 63 (77)
T ss_dssp CSHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSH-HHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCH-HHHhcCCHHHHHHHHHHHHH
Confidence 34667899999998777787776553 4556665544 79999764 67778887653
No 56
>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; 2.24A {Pyrococcus horikoshii} SCOP: d.104.1.4
Probab=33.92 E-value=13 Score=30.83 Aligned_cols=12 Identities=17% Similarity=0.421 Sum_probs=10.1
Q ss_pred CeeEeCCcEEEE
Q 021128 253 RFRREGNNLHTT 264 (317)
Q Consensus 253 ~F~R~G~DL~~~ 264 (317)
..+|+|+|||.+
T Consensus 105 ~~~R~GDDLy~~ 116 (190)
T 2ddz_A 105 EASRRGDDIYVN 116 (190)
T ss_dssp CEEEETTEEEET
T ss_pred eeeeccCeeeEC
Confidence 378999999975
No 57
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=31.82 E-value=59 Score=22.45 Aligned_cols=53 Identities=21% Similarity=0.338 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHH--HhHhhhCCc-ccccccccc
Q 021128 35 RGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEIN--NAYEVLSDS-ETRNIYDTY 90 (317)
Q Consensus 35 ~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~--~Ay~~L~d~-~~r~~YD~~ 90 (317)
..+|.+|.+++|+.|....+-+..-.=. +....|. .-|.+|.++ +++..|+.|
T Consensus 10 ~~~t~eea~~~F~~LL~e~~V~~~~tWe---~~~~~i~~DpRY~al~~~~eRk~~F~ey 65 (71)
T 1uzc_A 10 TWNTKEEAKQAFKELLKEKRVPSNASWE---QAMKMIINDPRYSALAKLSEKKQAFNAY 65 (71)
T ss_dssp CCCSHHHHHHHHHHHHHHTTCCTTCCHH---HHHHHHHTSGGGGGCSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCcCCCCCHH---HHHHHHccCccccccCCHHHHHHHHHHH
Confidence 3579999999999998887533332111 2222222 256666653 444455544
No 58
>3zxf_A Galectin-7; sugar binding protein; 1.38A {Homo sapiens} SCOP: b.29.1.3 PDB: 1bkz_A 2gal_A* 3gal_A* 4gal_A* 5gal_A* 3zxe_A*
Probab=24.08 E-value=1.3e+02 Score=23.22 Aligned_cols=43 Identities=12% Similarity=0.173 Sum_probs=30.0
Q ss_pred EEEEEecCCCCCCCEEEEcccCCCCCC--------C--CCccEEEEEEEeCCC
Q 021128 210 FVTVDIEKGMQDGQEVVFYEDGEPKID--------G--EPGDLKFRIRTAPHD 252 (317)
Q Consensus 210 ~~~V~Ip~G~~~G~~i~~~g~G~~~~~--------~--~~GDL~v~i~v~~h~ 252 (317)
-+.-.||.|+..|+.|++.|.=....+ + ...|+.+.++..-+.
T Consensus 7 P~~~~i~~gl~~G~~i~I~G~v~~~a~rF~Inl~~g~~~~~dialHfnpRf~~ 59 (138)
T 3zxf_A 7 PHKSSLPEGIRPGTVLRIRGLVPPNASRFHVNLLCGEEQGSDAALHFNPRLDT 59 (138)
T ss_dssp CEEEECTTCCCSSEEEEEEEEECTTCCBEEEEEESSSSTTCCEEEEEEEETTT
T ss_pred CEEeecCCCCCCCCEEEEEEEECCCCCEEEEEeeeCCCCCCCEEEEEEEEcCC
Confidence 366789999999999999997433221 1 235777777776553
No 59
>1ny9_A Transcriptional activator TIPA-S; all alpha, globin like; NMR {Streptomyces lividans} SCOP: a.181.1.1
Probab=23.62 E-value=78 Score=24.50 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCc
Q 021128 42 IKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGE 92 (317)
Q Consensus 42 Ik~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~ 92 (317)
|-+.++.....+.++.. . +.|..|.+-| +.||.-+..||++|.
T Consensus 82 l~~~h~~~l~~~~~~~s---~---e~~~~L~~mY--v~D~rF~~~~d~~~~ 124 (143)
T 1ny9_A 82 AAEDHRQGIARNHYDCG---Y---EMHTCLGEMY--VSDERFTRNIDAAKP 124 (143)
T ss_dssp HHHHHHHHHHHHSSCCC---H---HHHHHHHHHT--TSTHHHHHHHGGGST
T ss_pred HHHHHHHHHHHhCCCCC---H---HHHHHHHHHH--hcCHHHHHhHcccCh
Confidence 44556655434344442 2 4566666666 478999999998764
No 60
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=22.35 E-value=99 Score=21.31 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=20.4
Q ss_pred ccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcc
Q 021128 195 VCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYE 229 (317)
Q Consensus 195 ~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g 229 (317)
.|+.|.+..++.....+++.. .|+.+.+++
T Consensus 4 ~Cp~Cg~~~l~~~~~~~~~~~-----~G~~~~I~~ 33 (78)
T 3ga8_A 4 KCPVCHQGEMVSGIKDIPYTF-----RGRKTVLKG 33 (78)
T ss_dssp BCTTTSSSBEEEEEEEEEEEE-----TTEEEEEEE
T ss_pred ECCCCCCCeeEeEEEEEEEEE-----CCEEEEEcC
Confidence 699998876766666666654 466666654
No 61
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=22.23 E-value=89 Score=21.47 Aligned_cols=41 Identities=15% Similarity=0.326 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccc
Q 021128 44 RAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDT 89 (317)
Q Consensus 44 ~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 89 (317)
+.+|...+.-||+.. ..+.-+.|.+.|..|++.++...++.
T Consensus 17 ~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~eeK~~y~~~ 57 (81)
T 1i11_A 17 KDERRKILQAFPDMH-----NSNISKILGSRWKAMTNLEKQPYYEE 57 (81)
T ss_dssp HHHHHHHHTTCSSCC-----HHHHHHHHHHHHTTSCSGGGHHHHHH
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHhhhhhCCHHHHHHHHHH
Confidence 445555666678764 34677788899999998777655553
No 62
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=21.00 E-value=63 Score=21.45 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCcccccccc
Q 021128 43 KRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYD 88 (317)
Q Consensus 43 k~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD 88 (317)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 14 ~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~~eK~~y~~ 54 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH-----NAELSKMLGKSWKALTLAEKRPFVE 54 (71)
T ss_dssp HHHHHHHHHTTCTTSC-----HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3456666677788765 3366778888899998777655444
No 63
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=20.62 E-value=1.2e+02 Score=20.07 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=27.9
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCcccccccc
Q 021128 45 AYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYD 88 (317)
Q Consensus 45 ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD 88 (317)
..|...+.-||+...+ ..+.-+.|.+.|..|++.++....+
T Consensus 15 ~~r~~~~~~~p~~~~~---~~eisk~lg~~Wk~ls~~eK~~y~~ 55 (71)
T 1ckt_A 15 TCREEHKKKHPDASVN---FSEFSKKCSERWKTMSAKEKGKFED 55 (71)
T ss_dssp HHHHHHHHHCTTCCCC---HHHHHHHHHHHHHTCCTTTSHHHHH
T ss_pred HHHHHHHHHCCCCCCc---HHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 3455556678887532 2367778899999999887765444
Done!