Query 021130
Match_columns 317
No_of_seqs 121 out of 338
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 07:50:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021130.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021130hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2662 Magnesium transporters 100.0 1.8E-76 4E-81 567.2 27.3 281 16-315 53-336 (414)
2 PF01544 CorA: CorA-like Mg2+ 97.2 0.045 9.8E-07 50.7 18.8 161 28-221 4-179 (292)
3 TIGR00383 corA magnesium Mg(2+ 93.8 6.4 0.00014 37.4 18.8 150 46-222 41-204 (318)
4 COG0598 CorA Mg2+ and Co2+ tra 84.3 40 0.00088 32.4 17.0 153 46-225 46-212 (322)
5 PRK09546 zntB zinc transporter 83.1 45 0.00097 32.0 16.4 108 87-222 104-211 (324)
6 PF04012 PspA_IM30: PspA/IM30 80.9 31 0.00066 31.2 11.7 78 196-310 54-132 (221)
7 PF05591 DUF770: Protein of un 71.1 8.8 0.00019 33.6 5.1 40 191-230 110-152 (157)
8 TIGR03358 VI_chp_5 type VI sec 63.4 12 0.00027 32.8 4.5 40 191-230 111-153 (159)
9 PF07106 TBPIP: Tat binding pr 61.3 1E+02 0.0022 26.7 10.0 63 148-214 71-137 (169)
10 PF07889 DUF1664: Protein of u 57.8 80 0.0017 26.7 8.2 32 158-189 41-72 (126)
11 TIGR02976 phageshock_pspB phag 55.3 25 0.00055 27.0 4.5 35 186-224 35-69 (75)
12 COG4710 Predicted DNA-binding 52.5 18 0.00039 27.8 3.1 35 197-234 15-54 (80)
13 PF06667 PspB: Phage shock pro 51.6 31 0.00068 26.5 4.4 35 186-224 35-69 (75)
14 PF12325 TMF_TATA_bd: TATA ele 51.0 1.5E+02 0.0032 24.8 10.0 38 193-230 68-112 (120)
15 KOG0971 Microtubule-associated 51.0 2.2E+02 0.0048 31.9 12.0 134 144-308 363-501 (1243)
16 PF12128 DUF3584: Protein of u 47.9 2.2E+02 0.0048 32.7 12.3 80 150-232 722-810 (1201)
17 COG3516 Predicted component of 47.8 25 0.00054 31.1 3.8 40 191-230 116-158 (169)
18 PF05377 FlaC_arch: Flagella a 45.3 44 0.00096 24.2 4.1 26 205-230 19-44 (55)
19 COG1842 PspA Phage shock prote 44.5 2.6E+02 0.0056 25.8 13.8 43 194-236 53-96 (225)
20 TIGR02132 phaR_Bmeg polyhydrox 44.2 1.6E+02 0.0035 26.4 8.3 62 156-217 75-138 (189)
21 PF04504 DUF573: Protein of un 43.2 43 0.00093 26.8 4.3 59 150-208 12-71 (98)
22 PF10083 DUF2321: Uncharacteri 43.1 2E+02 0.0042 25.3 8.5 74 145-220 76-150 (158)
23 PF12761 End3: Actin cytoskele 42.2 1.2E+02 0.0026 27.6 7.4 11 211-221 132-142 (195)
24 PRK09458 pspB phage shock prot 40.5 64 0.0014 24.9 4.6 34 186-223 35-68 (75)
25 KOG1830 Wiskott Aldrich syndro 38.5 47 0.001 33.7 4.5 83 153-236 25-107 (518)
26 PF08317 Spc7: Spc7 kinetochor 38.3 2.6E+02 0.0056 27.0 9.6 17 43-59 13-29 (325)
27 PF05597 Phasin: Poly(hydroxya 36.9 2.6E+02 0.0057 23.7 9.0 67 153-219 58-128 (132)
28 PF04136 Sec34: Sec34-like fam 36.4 2.8E+02 0.0062 23.9 10.8 38 192-229 27-64 (157)
29 PF11945 WASH_WAHD: WAHD domai 36.4 1.4E+02 0.003 28.9 7.3 48 169-224 27-74 (297)
30 TIGR01834 PHA_synth_III_E poly 36.2 2.4E+02 0.0053 27.6 8.9 52 170-221 266-317 (320)
31 PRK10548 flagellar biosynthesi 35.7 1.5E+02 0.0033 24.7 6.6 57 157-230 21-82 (121)
32 PF06825 HSBP1: Heat shock fac 35.2 84 0.0018 22.7 4.2 22 292-313 23-44 (54)
33 PRK13694 hypothetical protein; 34.3 2.3E+02 0.005 22.3 8.0 18 275-292 63-80 (83)
34 KOG3684 Ca2+-activated K+ chan 33.0 1.9E+02 0.0042 29.7 7.9 93 187-310 383-475 (489)
35 KOG3506 40S ribosomal protein 32.7 29 0.00063 25.1 1.5 27 20-56 11-37 (56)
36 KOG4603 TBP-1 interacting prot 32.3 3.5E+02 0.0077 24.3 8.5 62 159-220 85-150 (201)
37 PF03233 Cauli_AT: Aphid trans 31.7 3.7E+02 0.0079 23.8 9.2 139 70-219 7-161 (163)
38 KOG4643 Uncharacterized coiled 30.5 1.6E+02 0.0034 33.3 7.1 77 144-233 160-237 (1195)
39 PF08970 Sda: Sporulation inhi 29.8 45 0.00098 23.3 2.0 12 282-293 7-18 (46)
40 PF10157 DUF2365: Uncharacteri 29.3 3.8E+02 0.0082 23.2 9.3 73 158-230 50-129 (149)
41 PF10234 Cluap1: Clusterin-ass 28.5 5.3E+02 0.011 24.6 10.7 35 145-179 154-188 (267)
42 KOG3647 Predicted coiled-coil 27.9 5.3E+02 0.012 24.9 9.4 47 145-191 97-146 (338)
43 PF01920 Prefoldin_2: Prefoldi 27.3 2.9E+02 0.0063 21.3 6.7 37 193-230 12-48 (106)
44 PF02583 Trns_repr_metal: Meta 25.1 1E+02 0.0022 23.9 3.6 31 196-226 5-35 (85)
45 PF08580 KAR9: Yeast cortical 24.9 9.1E+02 0.02 26.2 12.5 33 149-182 225-257 (683)
46 PRK09458 pspB phage shock prot 24.1 68 0.0015 24.7 2.3 24 290-313 42-65 (75)
47 PF10146 zf-C4H2: Zinc finger- 23.9 4.3E+02 0.0093 24.5 8.0 23 162-184 3-25 (230)
48 PRK15039 transcriptional repre 23.5 98 0.0021 24.6 3.2 22 197-218 10-31 (90)
49 PF10805 DUF2730: Protein of u 23.4 4E+02 0.0086 21.5 7.9 24 194-217 66-89 (106)
50 PF04799 Fzo_mitofusin: fzo-li 23.4 3.5E+02 0.0076 24.1 7.0 87 107-213 78-164 (171)
51 COG1579 Zn-ribbon protein, pos 23.3 5.1E+02 0.011 24.3 8.4 81 145-227 27-123 (239)
52 COG0497 RecN ATPase involved i 22.9 8.8E+02 0.019 25.7 10.8 70 153-223 158-238 (557)
53 TIGR01837 PHA_granule_1 poly(h 22.7 4.4E+02 0.0094 21.7 7.4 39 172-214 79-117 (118)
54 PF10073 DUF2312: Uncharacteri 22.5 3.6E+02 0.0079 20.7 7.7 18 275-292 55-72 (74)
55 PF14584 DUF4446: Protein of u 22.4 1.2E+02 0.0026 26.3 3.8 36 277-312 40-75 (151)
56 PRK11085 magnesium/nickel/coba 22.4 7.2E+02 0.016 24.1 15.0 136 46-216 39-192 (316)
57 PF04799 Fzo_mitofusin: fzo-li 22.0 4.9E+02 0.011 23.2 7.6 56 164-219 106-163 (171)
58 PF06008 Laminin_I: Laminin Do 21.7 6.4E+02 0.014 23.3 9.7 60 150-209 175-236 (264)
59 PF10805 DUF2730: Protein of u 21.4 4E+02 0.0088 21.4 6.6 28 195-222 74-101 (106)
60 PF11348 DUF3150: Protein of u 20.8 3.4E+02 0.0074 25.5 6.8 54 169-222 173-232 (257)
61 PF10158 LOH1CR12: Tumour supp 20.6 5.2E+02 0.011 21.8 7.7 64 163-226 52-123 (131)
62 PF04912 Dynamitin: Dynamitin 20.1 6.4E+02 0.014 24.9 9.0 18 201-218 262-279 (388)
No 1
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-76 Score=567.22 Aligned_cols=281 Identities=64% Similarity=0.888 Sum_probs=247.1
Q ss_pred HhhhhcccCCceeEEEEEcCCCCeEEEeeeHHHHHHHhCCCCCcccccCCCCCCCeeeeecCCeEEeecccceeEEeeCc
Q 021130 16 AAAATKKKTRSSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGREQAIVLNLEHIKAIITSEE 95 (317)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~d~~G~~~~~~~~K~~L~~~~gL~~RDLR~lD~~~s~~psIlvR~~aIlvnL~~iraII~~d~ 95 (317)
+-...+|++.++++|++||++|++++.+++|++||++.||+|||||++||+++||++|++|++|||+||+|||||||+|+
T Consensus 53 ~~~~~~~~~~~~~sw~~~D~tGn~~~~e~dK~~i~~r~~L~aRDLR~ldp~~~~~ssIl~RE~aIVlNLe~IKAIItaee 132 (414)
T KOG2662|consen 53 SSSVSKKSGSGSRSWTRFDATGNSTVLEVDKYTIMKRVGLPARDLRKLDPSLSYPSSILGRENAIVLNLEHIKAIITADE 132 (414)
T ss_pred CcccccccCCcceEEEEEcCCCCeeeccccHHHHHHHcCCChhhhhhccccccCccccccccceEEeehhhhheeeehhh
Confidence 33458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCChHHHHHHHHHhhCCCcccccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021130 96 VLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETA 175 (317)
Q Consensus 96 vllfd~~~~~~~~f~~~L~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPFEfraLEa~L~~v~~~Le~e~~~le~~ 175 (317)
|+|||+.+| +.++..++++++...+.+... +..+.....+.+||||||||+||+++|+.|++++..||+.
T Consensus 133 Vll~d~~~~-v~~~~~el~~~l~~~~~~~~~---------q~s~~~~~~~~lPFEFrALE~aLe~~~s~L~~~~~~Le~~ 202 (414)
T KOG2662|consen 133 VLLLDSLDP-VIPYNEELQRRLPVELESRGN---------QLSSDGGSKDELPFEFRALEVALEAACSFLDSRLSELETE 202 (414)
T ss_pred eeEeccccc-cchHHHHHHHHhccccccccc---------ccCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 999999999999865432100 1111122268999999999999999999999999999999
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHhhhhhhccCC-CCCCCCCCCCCCCCCCC
Q 021130 176 AYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAG-TSPVSGSGAANWFPASP 254 (317)
Q Consensus 176 ~~~~Ld~L~~~vs~~~Le~Lr~lK~~L~~l~~rv~~vr~~LeelLddDeDMa~MyLT~k~~~-~~~~~~~~~~~~~~~~~ 254 (317)
|+++||+|+.+|++.||++||.+|++|++|.+|||+|||+|+++||||+|||+||||+|+.+ ++ +.|-+.+|
T Consensus 203 ~~~~LdeLt~~is~~nL~~lr~~k~~Lt~l~~rvqkvRDeLe~LLddd~Dma~mYLT~K~~~~~~-------~~~~~~sp 275 (414)
T KOG2662|consen 203 AYPLLDELTNKISTLNLERLRILKKRLTELTSRVQKVRDELEELLDDDDDMAEMYLTRKLAQASS-------PESAPTSP 275 (414)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhHHhhhccc-------cccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999886 22 45666666
Q ss_pred Ccccccccccc--cccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 021130 255 TIGSKISRASR--ASLATIRGDENDVEELEMLLEAYFMQIDSTLNKLSTVRTFFLCFSSVYHF 315 (317)
Q Consensus 255 ~~~~~~~~~~~--~~~~~~~~~~~d~eElEmLLE~Y~~qvD~i~~~l~~L~e~IddTEd~i~~ 315 (317)
......++... .++ +++ ..+++||+|||||+||+|||+++|++.+|+||||||||+|.|
T Consensus 276 ~~~~~~~r~~~~~~~s-~~~-~~dd~eElEMLLEaYf~qiD~~~nk~~~Lre~IddTEd~InI 336 (414)
T KOG2662|consen 276 TIKAGISRAKSNRASS-TVR-GEDDVEELEMLLEAYFMQIDSTLNKLESLREYIDDTEDIINI 336 (414)
T ss_pred cccCCccchhhcccch-hcc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 66555555321 122 222 278999999999999999999999999999999999999874
No 2
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=97.23 E-value=0.045 Score=50.73 Aligned_cols=161 Identities=20% Similarity=0.256 Sum_probs=108.5
Q ss_pred eEEEEEcCCCCeEEEeeeHHHHHHHhCCCCCccc-ccCCCCCCCeeeeecCCeEEeecc--------------cceeEEe
Q 021130 28 RSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLR-ILDPLLSYPSTILGREQAIVLNLE--------------HIKAIIT 92 (317)
Q Consensus 28 ~~~~~~d~~G~~~~~~~~K~~L~~~~gL~~RDLR-~lD~~~s~~psIlvR~~aIlvnL~--------------~iraII~ 92 (317)
..|+-+...... ....|.+.+|+++..+. .+++. ..|.+..-++.+++.+. ++..++.
T Consensus 4 ~~Wi~~~~~~~~-----~~~~l~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 76 (292)
T PF01544_consen 4 FVWIDLSGPDDE-----ELEWLAEEFGLHPLTIEDALDPE--ERPRIEVFDDYLFIVLRAPEYEEEDDIDEESPLSFILG 76 (292)
T ss_dssp -EEEEEETTTCH-----HHHHHHHTTTS-HHHHHHHCCTS--SSSEEEEETTEEEEEEEEEEESTTCCECCEEEEEEEEE
T ss_pred cEEEEEeCCCHH-----HHHHHHHHhCcCHhHHHHHhCCC--cCCEEEEECCeEEEEEEEcchhhcccccccceEEEEEe
Confidence 445555433332 35567888999988776 44443 35556655555554432 3566777
Q ss_pred eCceeecCCCCCChHHHHHHHHHhhCCCcccccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 021130 93 SEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTEL 172 (317)
Q Consensus 93 ~d~vllfd~~~~~~~~f~~~L~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPFEfraLEa~L~~v~~~Le~e~~~l 172 (317)
.+.++-+..... +++.++..++... ....+.-..++..+|..++..+...+..+
T Consensus 77 ~~~lit~~~~~~---~~~~~~~~~~~~~-----------------------~~~~~~~~~ll~~il~~~~~~~~~~l~~l 130 (292)
T PF01544_consen 77 DNFLITVHRDPL---PFIDELRERLESR-----------------------NERPSSPEDLLYAILDEIVDDYFEVLEEL 130 (292)
T ss_dssp TTEEEEEESSSS---HCHHHHHHHHHST-----------------------TCSCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCC---hHHHHHHHHhhcc-----------------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777765542 4555666666411 11222335779999999999999999999
Q ss_pred HHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 021130 173 ETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLD 221 (317)
Q Consensus 173 e~~~~~~Ld~L~~~vs~~~Le~Lr~lK~~L~~l~~rv~~vr~~LeelLd 221 (317)
+.....+-+.+.+.-....+.++..+++.+..+..-+...++++.+++.
T Consensus 131 ~~~l~~le~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~ 179 (292)
T PF01544_consen 131 EDELDELEDELDDRPSNELLRELFDLRRELSRLRRSLSPLREVLQRLLR 179 (292)
T ss_dssp HHHHHHHHHHHTHTTTHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 8887777777756666778889999999999999999999999986554
No 3
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=93.77 E-value=6.4 Score=37.42 Aligned_cols=150 Identities=16% Similarity=0.172 Sum_probs=95.8
Q ss_pred HHHHHHHhCCCCCccccc-CCCCCCCeeeeecCCeEEe-------------ecccceeEEeeCceeecCCCCCChHHHHH
Q 021130 46 KHAIMHRVQIHARDLRIL-DPLLSYPSTILGREQAIVL-------------NLEHIKAIITSEEVLLRDPLDEHVIPVVA 111 (317)
Q Consensus 46 K~~L~~~~gL~~RDLR~l-D~~~s~~psIlvR~~aIlv-------------nL~~iraII~~d~vllfd~~~~~~~~f~~ 111 (317)
...+.+.+|+++-.+.-+ |+. ..|.+..-++...+ ...++.-++..+.++-+..... +.+.
T Consensus 41 ~~~l~~~~~l~~~~~ed~~~~~--~~~k~e~~~~~~~i~~~~~~~~~~~~~~~~~l~~~l~~~~liTv~~~~~---~~~~ 115 (318)
T TIGR00383 41 LAKLGQFFAIHPLALEDILNSP--QRPKVEEDEDHLFIISFFLNEDEDDTFETEQVSFILGKNLLFTIHEREL---PAFD 115 (318)
T ss_pred HHHHHHHcCcCcchHHHhhCCC--CCCcEEEECCEEEEEEEeeeccCCCcceeEEEEEEEECCEEEEEEcCCC---CcHH
Confidence 356778899999876633 332 22333333333322 3345666676666666643332 2344
Q ss_pred HHHHhhCCCcccccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhh
Q 021130 112 ELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRN 191 (317)
Q Consensus 112 ~L~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPFEfraLEa~L~~v~~~Le~e~~~le~~~~~~Ld~L~~~vs~~~ 191 (317)
.+.+++..... ....-| -..|-.+|..++..+..-+..++.....+-+.+...-....
T Consensus 116 ~~~~~~~~~~~--------------------~~~~~~--~~ll~~il~~ivd~~~~~l~~l~~~~~~le~~l~~~~~~~~ 173 (318)
T TIGR00383 116 SIRERIRTSQK--------------------VFEKGA--DYLLYDIFDAIIDSYFPLLENIEDELEELEDEIISGPTSTL 173 (318)
T ss_pred HHHHHHHhCch--------------------hhhCCH--HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 55555542210 000112 24688888888888888888888887776666655555678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 021130 192 LDRVRKLKSAMTRLTARVQKVRDELEQLLDD 222 (317)
Q Consensus 192 Le~Lr~lK~~L~~l~~rv~~vr~~LeelLdd 222 (317)
++++-.+|+.+..+..-+...+++++.+...
T Consensus 174 l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~ 204 (318)
T TIGR00383 174 MDEILSLRTELLALRRSLWPLRDVLNFLLRK 204 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8999999999999999999999999888654
No 4
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=84.32 E-value=40 Score=32.41 Aligned_cols=153 Identities=16% Similarity=0.164 Sum_probs=99.4
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCeeeeecCCeEEee--------------cccceeEEeeCceeecCCCCCChHHHHH
Q 021130 46 KHAIMHRVQIHARDLRILDPLLSYPSTILGREQAIVLN--------------LEHIKAIITSEEVLLRDPLDEHVIPVVA 111 (317)
Q Consensus 46 K~~L~~~~gL~~RDLR~lD~~~s~~psIlvR~~aIlvn--------------L~~iraII~~d~vllfd~~~~~~~~f~~ 111 (317)
...|-+.+|||+--+.-+--. ...|.|..-++...+- .+++.-+++.+.++-+-.... +...
T Consensus 46 ~~~l~~~~~l~~~~~ed~~~~-~~r~r~e~~d~~~~i~~~~~~~~~~~~~~~~~~v~~i~~~~~liT~r~~~~---~~~~ 121 (322)
T COG0598 46 LEWLAKTFGLHPLALEDLLDA-EQRPKVERYDDYLFIVLRDVNLEEEEDKAETEPVSIIVGKRRLITIRHRPL---PAFD 121 (322)
T ss_pred HHHHHHhcCCCcchHHHHhCc-ccCCceEeeCCEEEEEEEeeccccccccccceeEEEEEeCCEEEEEecCCC---ccHH
Confidence 345667799999877653221 2344555555433222 445566666666666654322 1233
Q ss_pred HHHHhhCCCcccccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhh
Q 021130 112 ELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRN 191 (317)
Q Consensus 112 ~L~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPFEfraLEa~L~~v~~~Le~e~~~le~~~~~~Ld~L~~~vs~~~ 191 (317)
.+..|+..... ...-| ..++..+|..+...+-.-+..++.....+=+.+-.+-+...
T Consensus 122 ~vr~r~~~~~~---------------------~~~~~--~~l~~~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~~~ 178 (322)
T COG0598 122 RVRERLEKGTL---------------------LTRGA--DELLYALLDAIVDNYFPVLEQIEDELEAIEDQLLASTTNEE 178 (322)
T ss_pred HHHHHHhcccc---------------------ccCCH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCccHHH
Confidence 44555543210 00111 26778888888888888888887777776666665555578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhH
Q 021130 192 LDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDD 225 (317)
Q Consensus 192 Le~Lr~lK~~L~~l~~rv~~vr~~LeelLddDeD 225 (317)
|++|..+++.+..+..-+...++++..++.++.+
T Consensus 179 l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~ 212 (322)
T COG0598 179 LERLGELRRSLVYLRRALAPLRDVLLRLARRPLD 212 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999887754
No 5
>PRK09546 zntB zinc transporter; Reviewed
Probab=83.07 E-value=45 Score=31.98 Aligned_cols=108 Identities=12% Similarity=0.080 Sum_probs=69.8
Q ss_pred ceeEEeeCceeecCCCCCChHHHHHHHHHhhCCCcccccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 021130 87 IKAIITSEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLA 166 (317)
Q Consensus 87 iraII~~d~vllfd~~~~~~~~f~~~L~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPFEfraLEa~L~~v~~~Le 166 (317)
+..+++.+.++-+..... +++.++..++..... ..-|.+ .|-.+|..++..+.
T Consensus 104 l~~~l~~~~lITv~~~~~---~~~~~~~~~~~~~~~----------------------~~~~~~--ll~~lld~ivd~~~ 156 (324)
T PRK09546 104 MRVYITDRLIVSTRHRKV---LALDDVVSDLQEGTG----------------------PTDCGG--WLVDVCDALTDHAS 156 (324)
T ss_pred EEEEEeCCEEEEEecCCc---ccHHHHHHHHHhCCC----------------------CCCHHH--HHHHHHHHHHHHHH
Confidence 566677776666643322 356666666643210 011332 55677777777777
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 021130 167 ARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDD 222 (317)
Q Consensus 167 ~e~~~le~~~~~~Ld~L~~~vs~~~Le~Lr~lK~~L~~l~~rv~~vr~~LeelLdd 222 (317)
.-+..++.....+-+.+-.+-+ ..++++-.+|+.+..+..-+...++++..+...
T Consensus 157 ~~l~~i~~~ld~lE~~l~~~~~-~~~~~l~~lrr~l~~lrr~l~p~~~~l~~L~~~ 211 (324)
T PRK09546 157 EFIEELHDKIIDLEDNLLDQQI-PPRGELALLRKQLIVMRRYMAPQRDVFARLASE 211 (324)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777776555444432211 245789999999999999999999999988743
No 6
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=80.91 E-value=31 Score=31.16 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC-ChhHHHhhhhhhccCCCCCCCCCCCCCCCCCCCCcccccccccccccccccCC
Q 021130 196 RKLKSAMTRLTARVQKVRDELEQLLD-DDDDMADLYLSRKMAGTSPVSGSGAANWFPASPTIGSKISRASRASLATIRGD 274 (317)
Q Consensus 196 r~lK~~L~~l~~rv~~vr~~LeelLd-dDeDMa~MyLT~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (317)
..+++++......+.+..+-...-|. .++|+|.-+|.++...
T Consensus 54 ~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~------------------------------------- 96 (221)
T PF04012_consen 54 KRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADL------------------------------------- 96 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------------------------
Confidence 34666677777777665554444444 4889999999999553
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 021130 275 ENDVEELEMLLEAYFMQIDSTLNKLSTVRTFFLCFS 310 (317)
Q Consensus 275 ~~d~eElEmLLE~Y~~qvD~i~~~l~~L~e~IddTE 310 (317)
....+.++-.++.+-.+++.+-+.+..+...|.+.+
T Consensus 97 e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k 132 (221)
T PF04012_consen 97 EEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELK 132 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335677777777888888888888887777776654
No 7
>PF05591 DUF770: Protein of unknown function (DUF770); InterPro: IPR008312 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, these proteins are encoded in type VI secretion loci (including the SCI genomic island in Salmonella enterica and the imp locus in Rhizobium leguminosarum) implicated in pathogenicity and protein secretion [, , [].
Probab=71.07 E-value=8.8 Score=33.63 Aligned_cols=40 Identities=20% Similarity=0.434 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhCChhHHHhhh
Q 021130 191 NLDRVRKLKSAMTRLTARVQ---KVRDELEQLLDDDDDMADLY 230 (317)
Q Consensus 191 ~Le~Lr~lK~~L~~l~~rv~---~vr~~LeelLddDeDMa~My 230 (317)
.|.+|..++++|..|.+... .+|+.|+++|.|++.++.+-
T Consensus 110 ~L~~LlelR~~L~~L~~~l~~~~~~r~~l~~~l~~~~~~~~l~ 152 (157)
T PF05591_consen 110 ELRKLLELREQLRDLKGPLDNNPAFRKLLQEILSDPEALEKLK 152 (157)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHCCHHHHHHHH
Confidence 45567777778888777764 49999999999999998764
No 8
>TIGR03358 VI_chp_5 type VI secretion protein, VC_A0107 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=63.39 E-value=12 Score=32.78 Aligned_cols=40 Identities=25% Similarity=0.454 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhCChhHHHhhh
Q 021130 191 NLDRVRKLKSAMTRLTARV---QKVRDELEQLLDDDDDMADLY 230 (317)
Q Consensus 191 ~Le~Lr~lK~~L~~l~~rv---~~vr~~LeelLddDeDMa~My 230 (317)
.|.+|..++++|..|.+.. ..+|+.|+++|.|++.++.+-
T Consensus 111 ~L~~LlelR~~L~~L~~~l~~~~~~~~~l~~~l~d~~~~~~L~ 153 (159)
T TIGR03358 111 ELKKLLEAREALRDLKGPLDNNPDLRKLLQELLKDKDLLEKLL 153 (159)
T ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHCCHHHHHHHH
Confidence 4556777777888887776 459999999999999888764
No 9
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=61.31 E-value=1e+02 Score=26.69 Aligned_cols=63 Identities=22% Similarity=0.393 Sum_probs=45.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhccChhhH-HHHHHHHHHHHHHHHHHHHHHH
Q 021130 148 PFEFRALEVALEAICSFLAARTTELETAAYPA---LDELTSKISSRNL-DRVRKLKSAMTRLTARVQKVRD 214 (317)
Q Consensus 148 PFEfraLEa~L~~v~~~Le~e~~~le~~~~~~---Ld~L~~~vs~~~L-e~Lr~lK~~L~~l~~rv~~vr~ 214 (317)
|=|+..|+.= +..|..++..++..+..+ |..|.+..++..| ..+-.++..+..++.|+..++.
T Consensus 71 ~eel~~ld~e----i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAE----IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666544 677777777777777666 4555566777666 4566888889999999988886
No 10
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=57.78 E-value=80 Score=26.69 Aligned_cols=32 Identities=6% Similarity=0.178 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh
Q 021130 158 LEAICSFLAARTTELETAAYPALDELTSKISS 189 (317)
Q Consensus 158 L~~v~~~Le~e~~~le~~~~~~Ld~L~~~vs~ 189 (317)
|..+|+.+...+..+-.....+=++|..+|.+
T Consensus 41 m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~ 72 (126)
T PF07889_consen 41 MSDAVASVSKQLEQVSESLSSTKKHLSQRIDR 72 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666656666666666655544
No 11
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=55.31 E-value=25 Score=27.00 Aligned_cols=35 Identities=29% Similarity=0.527 Sum_probs=27.3
Q ss_pred ccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChh
Q 021130 186 KISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDD 224 (317)
Q Consensus 186 ~vs~~~Le~Lr~lK~~L~~l~~rv~~vr~~LeelLddDe 224 (317)
..+....++|-+|-.+..+++.|| ++||.+||+|.
T Consensus 35 ~ls~~d~~~L~~L~~~a~rm~eRI----~tLE~ILd~e~ 69 (75)
T TIGR02976 35 SLSTDDQALLQELYAKADRLEERI----DTLERILDAEH 69 (75)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCC
Confidence 356667778888888888888888 67889998874
No 12
>COG4710 Predicted DNA-binding protein with an HTH domain [General function prediction only]
Probab=52.52 E-value=18 Score=27.77 Aligned_cols=35 Identities=29% Similarity=0.630 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHhhCChhHHHhhhhhhc
Q 021130 197 KLKSAMTRLTARVQK-----VRDELEQLLDDDDDMADLYLSRK 234 (317)
Q Consensus 197 ~lK~~L~~l~~rv~~-----vr~~LeelLddDeDMa~MyLT~k 234 (317)
.++.||+.|..+..+ ||++||.-++ +|.++||..-
T Consensus 15 E~~eRL~~Ls~~tgrtkayyvrEaIE~~ie---emED~ylA~~ 54 (80)
T COG4710 15 ELKERLDNLSKNTGRTKAYYVREAIEAYIE---EMEDFYLAVN 54 (80)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHHHH
Confidence 356677777665433 9999999985 5666787654
No 13
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=51.61 E-value=31 Score=26.53 Aligned_cols=35 Identities=26% Similarity=0.537 Sum_probs=27.5
Q ss_pred ccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChh
Q 021130 186 KISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDD 224 (317)
Q Consensus 186 ~vs~~~Le~Lr~lK~~L~~l~~rv~~vr~~LeelLddDe 224 (317)
.+|....++|-.|-.+..+++.|| ++||.+||.|.
T Consensus 35 gLs~~d~~~L~~L~~~a~rm~eRI----~tLE~ILdae~ 69 (75)
T PF06667_consen 35 GLSEEDEQRLQELYEQAERMEERI----ETLERILDAEH 69 (75)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCC
Confidence 466777788888888888888888 57888887653
No 14
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=51.04 E-value=1.5e+02 Score=24.82 Aligned_cols=38 Identities=29% Similarity=0.564 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHhhCChhHHHhhh
Q 021130 193 DRVRKLKSAMTRLTARVQKV-------RDELEQLLDDDDDMADLY 230 (317)
Q Consensus 193 e~Lr~lK~~L~~l~~rv~~v-------r~~LeelLddDeDMa~My 230 (317)
.++..|+..+..+..|.+.. -+.++||=.|=.||..||
T Consensus 68 ~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777664 466788889999999999
No 15
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=51.00 E-value=2.2e+02 Score=31.91 Aligned_cols=134 Identities=18% Similarity=0.224 Sum_probs=70.0
Q ss_pred CCCCchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh-hhHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 021130 144 EDESPFEFRALEVA---LEAICSFLAARTTELETAAYPALDELTSKISS-RNLDRVR-KLKSAMTRLTARVQKVRDELEQ 218 (317)
Q Consensus 144 ~~~LPFEfraLEa~---L~~v~~~Le~e~~~le~~~~~~Ld~L~~~vs~-~~Le~Lr-~lK~~L~~l~~rv~~vr~~Lee 218 (317)
...-.|||+=||-- |-.+.-.|..-...=......+-++|+.+-+. ..|++.+ .|++++...+..+-.+++-++-
T Consensus 363 ~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDA 442 (1243)
T KOG0971|consen 363 QAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDA 442 (1243)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667999998853 33333332211111111122233344433222 3444444 4567788888888889988888
Q ss_pred hhCChhHHHhhhhhhccCCCCCCCCCCCCCCCCCCCCcccccccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 021130 219 LLDDDDDMADLYLSRKMAGTSPVSGSGAANWFPASPTIGSKISRASRASLATIRGDENDVEELEMLLEAYFMQIDSTLNK 298 (317)
Q Consensus 219 lLddDeDMa~MyLT~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~eElEmLLE~Y~~qvD~i~~~ 298 (317)
-|--++... -||+|... +. .+ +.-.++.++++|-|-|---+-++.-..-
T Consensus 443 AlGAE~MV~--qLtdknln------------------lE---ek--------VklLeetv~dlEalee~~EQL~Esn~el 491 (1243)
T KOG0971|consen 443 ALGAEEMVE--QLTDKNLN------------------LE---EK--------VKLLEETVGDLEALEEMNEQLQESNREL 491 (1243)
T ss_pred hhcHHHHHH--HHHhhccC------------------HH---HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887766543 24555442 00 00 0013556677776666555555555555
Q ss_pred HHHHHhhhhc
Q 021130 299 LSTVRTFFLC 308 (317)
Q Consensus 299 l~~L~e~Idd 308 (317)
...|+|-||-
T Consensus 492 e~DLreEld~ 501 (1243)
T KOG0971|consen 492 ELDLREELDM 501 (1243)
T ss_pred HHHHHHHHHH
Confidence 5555555553
No 16
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=47.93 E-value=2.2e+02 Score=32.68 Aligned_cols=80 Identities=15% Similarity=0.339 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------ccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021130 150 EFRALEVALEAICSFLAARTTELETAAYPALDELTS---------KISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLL 220 (317)
Q Consensus 150 EfraLEa~L~~v~~~Le~e~~~le~~~~~~Ld~L~~---------~vs~~~Le~Lr~lK~~L~~l~~rv~~vr~~LeelL 220 (317)
...++++-+......+..+.......+..-++.|.. +|++. +|..+++++..+...++.+.+.=.++.
T Consensus 722 ~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~---~I~~l~~~i~~L~~~l~~ie~~r~~V~ 798 (1201)
T PF12128_consen 722 QWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPE---RIQQLKQEIEQLEKELKRIEERRAEVI 798 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 346677777777777777777777777776666643 35543 688899999999999999999999999
Q ss_pred CChhHHHhhhhh
Q 021130 221 DDDDDMADLYLS 232 (317)
Q Consensus 221 ddDeDMa~MyLT 232 (317)
+=+.+|...|..
T Consensus 799 eY~~~~~~~~~~ 810 (1201)
T PF12128_consen 799 EYEDWLQEEWDK 810 (1201)
T ss_pred HHHHHHHHHHHh
Confidence 999999999977
No 17
>COG3516 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.77 E-value=25 Score=31.08 Aligned_cols=40 Identities=18% Similarity=0.396 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhCChhHHHhhh
Q 021130 191 NLDRVRKLKSAMTRLTARVQ---KVRDELEQLLDDDDDMADLY 230 (317)
Q Consensus 191 ~Le~Lr~lK~~L~~l~~rv~---~vr~~LeelLddDeDMa~My 230 (317)
.|.+|..++++|..|.+... .+++.|+++|.|++.+..+-
T Consensus 116 ~L~kLLeaR~~L~~L~~~ldg~~~~e~~l~~lL~n~~~l~~L~ 158 (169)
T COG3516 116 ELKKLLEARTALADLKGPLDGNPAFEELLQDLLKNEELLQKLA 158 (169)
T ss_pred HHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHcCHHHHHHHH
Confidence 45566667777777776653 48999999999999988764
No 18
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=45.31 E-value=44 Score=24.23 Aligned_cols=26 Identities=15% Similarity=0.468 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhhCChhHHHhhh
Q 021130 205 LTARVQKVRDELEQLLDDDDDMADLY 230 (317)
Q Consensus 205 l~~rv~~vr~~LeelLddDeDMa~My 230 (317)
+...-+.+++.++++=++=.|+..||
T Consensus 19 vk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 19 VKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444433334444555
No 19
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=44.49 E-value=2.6e+02 Score=25.84 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhhCChhHHHhhhhhhccC
Q 021130 194 RVRKLKSAMTRLTARVQK-VRDELEQLLDDDDDMADLYLSRKMA 236 (317)
Q Consensus 194 ~Lr~lK~~L~~l~~rv~~-vr~~LeelLddDeDMa~MyLT~k~~ 236 (317)
+-+.+..++.....++.+ -..+..=|--.++++|..-|+++..
T Consensus 53 ~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~ 96 (225)
T COG1842 53 RQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQS 96 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445566667777777666 3455666677889999999988843
No 20
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=44.18 E-value=1.6e+02 Score=26.43 Aligned_cols=62 Identities=21% Similarity=0.269 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021130 156 VALEAICSFLAARTTELETAAYPALDELTSK--ISSRNLDRVRKLKSAMTRLTARVQKVRDELE 217 (317)
Q Consensus 156 a~L~~v~~~Le~e~~~le~~~~~~Ld~L~~~--vs~~~Le~Lr~lK~~L~~l~~rv~~vr~~Le 217 (317)
+-+...+-.||.++..++.......+.|... -++.-=.+|--+|++|..+..+|.++-+.||
T Consensus 75 arvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE 138 (189)
T TIGR02132 75 ANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLE 138 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666778888888877766666666511 1111113444555555555555555554444
No 21
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=43.22 E-value=43 Score=26.82 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhH-HHHHHHHHHHHHHHHH
Q 021130 150 EFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNL-DRVRKLKSAMTRLTAR 208 (317)
Q Consensus 150 EfraLEa~L~~v~~~Le~e~~~le~~~~~~Ld~L~~~vs~~~L-e~Lr~lK~~L~~l~~r 208 (317)
|+..|++++.....+=-.-......-...+-+.|..+++...| +++|.||++-.....+
T Consensus 12 Ei~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~~~~k 71 (98)
T PF04504_consen 12 EIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRNAVKK 71 (98)
T ss_pred HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 7888888888754321100011111122223344445666555 7888888886665554
No 22
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=43.09 E-value=2e+02 Score=25.35 Aligned_cols=74 Identities=20% Similarity=0.222 Sum_probs=46.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhh
Q 021130 145 DESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQK-VRDELEQLL 220 (317)
Q Consensus 145 ~~LPFEfraLEa~L~~v~~~Le~e~~~le~~~~~~Ld~L~~~vs~~~Le~Lr~lK~~L~~l~~rv~~-vr~~LeelL 220 (317)
.+.|+--++||++-+-+- .++.-...-.......+.+|...-....+- +..+|+-++++..-+.. +|+.|-+++
T Consensus 76 kpyPWt~~~L~aa~el~e-e~eeLs~deke~~~~sl~dL~~d~PkT~vA-~~rfKk~~~K~g~~v~~~~~dIlVdv~ 150 (158)
T PF10083_consen 76 KPYPWTENALEAANELIE-EDEELSPDEKEQFKESLPDLTKDTPKTKVA-ATRFKKILSKAGSIVGDAIRDILVDVA 150 (158)
T ss_pred CCCchHHHHHHHHHHHHH-HhhcCCHHHHHHHHhhhHHHhhcCCccHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 578999999999877654 333333334445666788887654444443 44477777776665543 666666654
No 23
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=42.22 E-value=1.2e+02 Score=27.58 Aligned_cols=11 Identities=64% Similarity=0.857 Sum_probs=6.9
Q ss_pred HHHHHHHHhhC
Q 021130 211 KVRDELEQLLD 221 (317)
Q Consensus 211 ~vr~~LeelLd 221 (317)
.||..++.||+
T Consensus 132 lvk~e~EqLL~ 142 (195)
T PF12761_consen 132 LVKREFEQLLD 142 (195)
T ss_pred HHHHHHHHHHH
Confidence 35666666666
No 24
>PRK09458 pspB phage shock protein B; Provisional
Probab=40.52 E-value=64 Score=24.89 Aligned_cols=34 Identities=26% Similarity=0.516 Sum_probs=24.7
Q ss_pred ccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCh
Q 021130 186 KISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDD 223 (317)
Q Consensus 186 ~vs~~~Le~Lr~lK~~L~~l~~rv~~vr~~LeelLddD 223 (317)
.+|..+.++|-.|-.+-.+++.|+ ++||.+||.|
T Consensus 35 ~Ls~~d~~~L~~L~~~A~rm~~RI----~tLE~ILDae 68 (75)
T PRK09458 35 GLSQEEQQRLAQLTEKAERMRERI----QALEAILDAE 68 (75)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHccc
Confidence 356667777777777777777777 5678888865
No 25
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=38.52 E-value=47 Score=33.69 Aligned_cols=83 Identities=19% Similarity=0.268 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHhhhhh
Q 021130 153 ALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLS 232 (317)
Q Consensus 153 aLEa~L~~v~~~Le~e~~~le~~~~~~Ld~L~~~vs~~~Le~Lr~lK~~L~~l~~rv~~vr~~LeelLddDeDMa~MyLT 232 (317)
=|||.-..++..+=.++..|.+.|.++..+|-.....-+ .|+-.|..|+.+|.-+|..+--..||+-=+|-.|++-+=|
T Consensus 25 ELecvtN~TLaniIRQLsSLSKhAEdIFGELf~da~~f~-~R~NSLQ~RIDRL~vkVtqLDs~~eevsLqdinmrKAFkS 103 (518)
T KOG1830|consen 25 ELECVTNITLANIIRQLSSLSKHAEDIFGELFNDANNFN-HRANSLQERIDRLAVKVTQLDSTVEEVSLQDINMRKAFKS 103 (518)
T ss_pred ceeeecchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhHHHHHHHHHhhhhhccCCcccccccchhHHHhhhhh
Confidence 378888888888889999999999999999976544322 4677888899999999988888888888888888887766
Q ss_pred hccC
Q 021130 233 RKMA 236 (317)
Q Consensus 233 ~k~~ 236 (317)
.+..
T Consensus 104 Stvq 107 (518)
T KOG1830|consen 104 STVQ 107 (518)
T ss_pred hhhh
Confidence 6554
No 26
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=38.31 E-value=2.6e+02 Score=27.01 Aligned_cols=17 Identities=12% Similarity=0.182 Sum_probs=12.9
Q ss_pred eeeHHHHHHHhCCCCCc
Q 021130 43 DVDKHAIMHRVQIHARD 59 (317)
Q Consensus 43 ~~~K~~L~~~~gL~~RD 59 (317)
.++=.+++...|++.=|
T Consensus 13 ~isL~~FL~~~~I~F~d 29 (325)
T PF08317_consen 13 PISLQDFLNMTGIRFYD 29 (325)
T ss_pred CcCHHHHHHHhCceeCC
Confidence 36677899999998833
No 27
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=36.86 E-value=2.6e+02 Score=23.69 Aligned_cols=67 Identities=19% Similarity=0.331 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHh
Q 021130 153 ALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKL----KSAMTRLTARVQKVRDELEQL 219 (317)
Q Consensus 153 aLEa~L~~v~~~Le~e~~~le~~~~~~Ld~L~~~vs~~~Le~Lr~l----K~~L~~l~~rv~~vr~~Leel 219 (317)
.++-....+....+..+..+...+....+.|+..+...--.-|..| ++-+..|..|+..+...|+++
T Consensus 58 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l 128 (132)
T PF05597_consen 58 KAEEQVEEARDQVKSRVDDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALSARIDQLTAQVERL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555566666666666666666654433222222222 444555555555555555543
No 28
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=36.38 E-value=2.8e+02 Score=23.94 Aligned_cols=38 Identities=21% Similarity=0.516 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHhh
Q 021130 192 LDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADL 229 (317)
Q Consensus 192 Le~Lr~lK~~L~~l~~rv~~vr~~LeelLddDeDMa~M 229 (317)
+..|-.+...-..++.+...++++=+++|++-..+..+
T Consensus 27 ~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ 64 (157)
T PF04136_consen 27 LDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEEL 64 (157)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666777777777777777666655444
No 29
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=36.36 E-value=1.4e+02 Score=28.87 Aligned_cols=48 Identities=13% Similarity=0.326 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChh
Q 021130 169 TTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDD 224 (317)
Q Consensus 169 ~~~le~~~~~~Ld~L~~~vs~~~Le~Lr~lK~~L~~l~~rv~~vr~~LeelLddDe 224 (317)
+..|+..+..+...+.. |+-..+.+|..+..|+..++.-|+.|=....
T Consensus 27 L~~L~~v~~diF~rI~~--------Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs~k 74 (297)
T PF11945_consen 27 LEYLDKVSNDIFSRISA--------RVERNRERLQAIQQRIEVAQAKIEKLQGSKK 74 (297)
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 34455555555555544 4555666777777777777777776655544
No 30
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=36.19 E-value=2.4e+02 Score=27.59 Aligned_cols=52 Identities=12% Similarity=0.199 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 021130 170 TELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLD 221 (317)
Q Consensus 170 ~~le~~~~~~Ld~L~~~vs~~~Le~Lr~lK~~L~~l~~rv~~vr~~LeelLd 221 (317)
..+......+.+..-..++-..-..|..+-++|.+|+.+++.++.+|.++-.
T Consensus 266 m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 266 MRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444444444433322222246777889999999999999999988754
No 31
>PRK10548 flagellar biosynthesis protein FliT; Provisional
Probab=35.69 E-value=1.5e+02 Score=24.70 Aligned_cols=57 Identities=25% Similarity=0.285 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHhhh
Q 021130 157 ALEAICSFLAARTTELETAAYPALDELTSK-----ISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLY 230 (317)
Q Consensus 157 ~L~~v~~~Le~e~~~le~~~~~~Ld~L~~~-----vs~~~Le~Lr~lK~~L~~l~~rv~~vr~~LeelLddDeDMa~My 230 (317)
.|..+...-..++..+|.....+.+.|... .+....+ ..++.|..+|+||..++.+-
T Consensus 21 ML~aA~~g~Wd~Li~lE~~y~~~Ve~l~~~~~~~~l~~~~q~-----------------~~~~lL~~IL~nda~Ir~Ll 82 (121)
T PRK10548 21 MLRLATEGQWDELIEQEVAYVQAVEEIAHLTIPPDISTVMQE-----------------QLRPMLRQILDNEAELKQLL 82 (121)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
Confidence 344555555667888888888888888543 2222222 34467778888888777654
No 32
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=35.21 E-value=84 Score=22.66 Aligned_cols=22 Identities=9% Similarity=0.107 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhhhhcccccc
Q 021130 292 IDSTLNKLSTVRTFFLCFSSVY 313 (317)
Q Consensus 292 vD~i~~~l~~L~e~IddTEd~i 313 (317)
-++|+.|+..+..+|||.|.-|
T Consensus 23 S~~I~~riDeM~~RIDdLE~si 44 (54)
T PF06825_consen 23 SDQILGRIDEMSSRIDDLEKSI 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHH
Confidence 3789999999999999988654
No 33
>PRK13694 hypothetical protein; Provisional
Probab=34.30 E-value=2.3e+02 Score=22.27 Aligned_cols=18 Identities=22% Similarity=0.494 Sum_probs=14.5
Q ss_pred CCchHHHHHHHHHHHHHH
Q 021130 275 ENDVEELEMLLEAYFMQI 292 (317)
Q Consensus 275 ~~d~eElEmLLE~Y~~qv 292 (317)
.++.+|-|++||.|...+
T Consensus 63 ~~er~E~EaiLe~Y~~AL 80 (83)
T PRK13694 63 DDERAEEEAILDLYMDAL 80 (83)
T ss_pred HhHHHHHHHHHHHHHHHh
Confidence 457788999999997654
No 34
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=33.00 E-value=1.9e+02 Score=29.68 Aligned_cols=93 Identities=17% Similarity=0.192 Sum_probs=60.1
Q ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHhhhhhhccCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 021130 187 ISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWFPASPTIGSKISRASRA 266 (317)
Q Consensus 187 vs~~~Le~Lr~lK~~L~~l~~rv~~vr~~LeelLddDeDMa~MyLT~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (317)
+.+.+-.+||.+.+++=.--..-++||-...++.|+-.++-+|-=|...-. +
T Consensus 383 ~~k~~~~rlR~hQRkfL~AI~~fR~Vk~~qRkl~e~~nsl~d~aK~~~~my-----------------d----------- 434 (489)
T KOG3684|consen 383 VSKGDQARLRKHQRKFLQAIHQFRSVKWEQRKLSEQANSLVDLAKTQNDMY-----------------D----------- 434 (489)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH-----------------H-----------
Confidence 355677789988888554445567788788888877765555432211110 0
Q ss_pred ccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 021130 267 SLATIRGDENDVEELEMLLEAYFMQIDSTLNKLSTVRTFFLCFS 310 (317)
Q Consensus 267 ~~~~~~~~~~d~eElEmLLE~Y~~qvD~i~~~l~~L~e~IddTE 310 (317)
... .....++++|+=+++-...++.+...+.++-.++..+.
T Consensus 435 ~~~---~l~~~q~~le~qI~~Le~kl~~l~~~l~s~~~~~~~~~ 475 (489)
T KOG3684|consen 435 LLQ---ELHSRQEELEKQIDTLESKLEALTASLSSLPGLLAQPL 475 (489)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhcCcc
Confidence 000 02346788888888888888888888888877776543
No 35
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=32.69 E-value=29 Score=25.12 Aligned_cols=27 Identities=19% Similarity=0.376 Sum_probs=21.7
Q ss_pred hcccCCceeEEEEEcCCCCeEEEeeeHHHHHHHhCCC
Q 021130 20 TKKKTRSSRSWILLDAAGNSTVLDVDKHAIMHRVQIH 56 (317)
Q Consensus 20 ~~~~~~~~~~~~~~d~~G~~~~~~~~K~~L~~~~gL~ 56 (317)
+||.|.|+++|.+- -.++-|+++|||.
T Consensus 11 ~~kfg~GsrsC~vC----------sn~~gLIrKYGL~ 37 (56)
T KOG3506|consen 11 PRKFGQGSRSCRVC----------SNRHGLIRKYGLN 37 (56)
T ss_pred ccccCCCCcceeee----------ccchhHHHHhhhH
Confidence 67899999999775 4577888998885
No 36
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=32.25 E-value=3.5e+02 Score=24.29 Aligned_cols=62 Identities=13% Similarity=0.336 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHhhccChhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021130 159 EAICSFLAARTTELETAAYPA---LDELTSKISSRNL-DRVRKLKSAMTRLTARVQKVRDELEQLL 220 (317)
Q Consensus 159 ~~v~~~Le~e~~~le~~~~~~---Ld~L~~~vs~~~L-e~Lr~lK~~L~~l~~rv~~vr~~LeelL 220 (317)
..-+..|++++..+...+..+ +..|.+.+|+..+ +..-.|+........|...++....++=
T Consensus 85 d~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vt 150 (201)
T KOG4603|consen 85 DGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVT 150 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 344445555555555555444 4445556666554 5667788888888888888888887774
No 37
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=31.69 E-value=3.7e+02 Score=23.81 Aligned_cols=139 Identities=15% Similarity=0.270 Sum_probs=72.0
Q ss_pred CeeeeecCCeEEeecccceeEEeeCceeecCCCCCChHHHHH------HHHHhhCCCcccccCCCCCCCCCCC-C-CCCC
Q 021130 70 PSTILGREQAIVLNLEHIKAIITSEEVLLRDPLDEHVIPVVA------ELQRRLTPVNAIRDCQGDGKEYAGG-N-DVDA 141 (317)
Q Consensus 70 ~psIlvR~~aIlvnL~~iraII~~d~vllfd~~~~~~~~f~~------~L~~rL~~~~~~~~~~~~~~~~~~~-~-~~~~ 141 (317)
-|+|-=.+ -+|+|-++- +=+-++.++|.+........+. ++..|--...... -.++|- + .+++
T Consensus 7 ~pHiYkK~--~~~~lk~l~-~~~~~r~y~f~s~~~~i~~ii~h~NNlN~i~~r~~l~~~kl------~sylGleKD~Se~ 77 (163)
T PF03233_consen 7 YPHIYKKD--QILRLKPLN-VSSNDRRYVFSSVKGNIQSIINHCNNLNEIVGRNWLKLSKL------LSYLGLEKDPSEG 77 (163)
T ss_pred CCceeecc--ceEEecccc-cCCCCceEEeecCCcchHHHHHHHhhHHHHHHHHHHHHHHH------HHHhccccCCccc
Confidence 45777553 345555554 6678889999886554333221 1111110000000 001122 1 1223
Q ss_pred CCCCCCchh--HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhh---ccChhhHHHHHHHHHHHHHHHHHHHHHH
Q 021130 142 GEEDESPFE--FRALEVALEAI---CSFLAARTTELETAAYPALDELTS---KISSRNLDRVRKLKSAMTRLTARVQKVR 213 (317)
Q Consensus 142 ~~~~~LPFE--fraLEa~L~~v---~~~Le~e~~~le~~~~~~Ld~L~~---~vs~~~Le~Lr~lK~~L~~l~~rv~~vr 213 (317)
......||| |+=++.+|... -+..-.++..|+.... -++.|+. .+. .++.....++..+..|..+...||
T Consensus 78 ~S~~K~Pf~~~~k~~~~ifkegg~d~~k~~~~l~~L~e~sn-ki~kLe~~~k~L~-d~Iv~~~~i~e~IKd~de~L~~I~ 155 (163)
T PF03233_consen 78 LSKSKSPFESFFKDLSKIFKEGGGDKQKQLKLLPTLEEISN-KIRKLETEVKKLK-DNIVTEKLIEELIKDFDERLKEIR 155 (163)
T ss_pred cccCCCcHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHH-HHHHHHHHHHhHh-hhccccHHHHHHHHHHHHHHHHHH
Confidence 456788974 67778877766 3333334444444333 2233322 222 225556677888888888888888
Q ss_pred HHHHHh
Q 021130 214 DELEQL 219 (317)
Q Consensus 214 ~~Leel 219 (317)
+.|..+
T Consensus 156 d~iK~I 161 (163)
T PF03233_consen 156 DKIKKI 161 (163)
T ss_pred HHHHhh
Confidence 877655
No 38
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=30.53 E-value=1.6e+02 Score=33.28 Aligned_cols=77 Identities=26% Similarity=0.443 Sum_probs=52.2
Q ss_pred CCCCchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 021130 144 EDESPFEFRAL-EVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDD 222 (317)
Q Consensus 144 ~~~LPFEfraL-Ea~L~~v~~~Le~e~~~le~~~~~~Ld~L~~~vs~~~Le~Lr~lK~~L~~l~~rv~~vr~~LeelLdd 222 (317)
...-||-.++= +-.|...|..++...+.|+.. |+.+ -+.|+++++.|..++.+..+.|.+++++|++
T Consensus 160 ~~~sp~~~~~~~~~hL~velAdle~kir~LrqE-------lEEK-----~enll~lr~eLddleae~~klrqe~~e~l~e 227 (1195)
T KOG4643|consen 160 LYKSPYDIVVKKNLHLEVELADLEKKIRTLRQE-------LEEK-----FENLLRLRNELDDLEAEISKLRQEIEEFLDE 227 (1195)
T ss_pred CCCCcchhhcchhHHHHHHHHHHHHHHHHHHHH-------HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455544432 235566666666666665544 4333 2678999999999999999999999999976
Q ss_pred hhHHHhhhhhh
Q 021130 223 DDDMADLYLSR 233 (317)
Q Consensus 223 DeDMa~MyLT~ 233 (317)
-. =++||--+
T Consensus 228 a~-ra~~yrde 237 (1195)
T KOG4643|consen 228 AH-RADRYRDE 237 (1195)
T ss_pred HH-hhhhhhhH
Confidence 44 34566544
No 39
>PF08970 Sda: Sporulation inhibitor A; InterPro: IPR015064 Members of this protein group contain two antiparallel alpha helices that are linked by a highly structured inter-helix loop to form a helical hairpin; the structure is stabilised by numerous hydrophobic and electrostatic interactions. These sporulation inhibitors are antikinases that bind to the histidine kinase KinA phosphotransfer domain and act as a molecular barricade that inhibit productive interaction between the ATP binding site and the phosphorylatable KinA His residue. This results in the inhibition of sporulation (by preventing phosphorylation of spo0A) []. ; PDB: 3FYR_B 1PV0_A.
Probab=29.84 E-value=45 Score=23.31 Aligned_cols=12 Identities=42% Similarity=0.852 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHH
Q 021130 282 EMLLEAYFMQID 293 (317)
Q Consensus 282 EmLLE~Y~~qvD 293 (317)
|+|+|+|++.++
T Consensus 7 e~LiesY~~A~e 18 (46)
T PF08970_consen 7 ELLIESYHKAIE 18 (46)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 899999999864
No 40
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=29.27 E-value=3.8e+02 Score=23.24 Aligned_cols=73 Identities=15% Similarity=0.247 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccChhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhCChhHHHhhh
Q 021130 158 LEAICSFLAARTTELETAAYPALDELTS---KISSRNLDRVRKLKSAMTRL----TARVQKVRDELEQLLDDDDDMADLY 230 (317)
Q Consensus 158 L~~v~~~Le~e~~~le~~~~~~Ld~L~~---~vs~~~Le~Lr~lK~~L~~l----~~rv~~vr~~LeelLddDeDMa~My 230 (317)
-..+...||.+...+-..+...+..|.. .+|..-.+.+.-+|.....+ ..-++..+..|....+=++.|.-+|
T Consensus 50 d~~~L~~LE~~a~~ia~svd~ll~~L~~~L~~mS~~Tv~~~~~y~~sv~~~cdsvD~sik~~y~liakceELn~~M~~v~ 129 (149)
T PF10157_consen 50 DPAVLHDLERDAQAIAESVDSLLRSLRSSLHSMSAITVEHMETYKDSVDKLCDSVDASIKSMYTLIAKCEELNESMKPVY 129 (149)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666665543 23333333344344433322 2233334444444444455555444
No 41
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=28.49 E-value=5.3e+02 Score=24.61 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=29.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021130 145 DESPFEFRALEVALEAICSFLAARTTELETAAYPA 179 (317)
Q Consensus 145 ~~LPFEfraLEa~L~~v~~~Le~e~~~le~~~~~~ 179 (317)
..-|+|+--+|-++..++..+..++..++..+..+
T Consensus 154 ~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l 188 (267)
T PF10234_consen 154 LARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNL 188 (267)
T ss_pred HcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999998877776554
No 42
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=27.87 E-value=5.3e+02 Score=24.85 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=31.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhccChhh
Q 021130 145 DESPFEFRALEVALEAICSFLAARTTELETAAYPA---LDELTSKISSRN 191 (317)
Q Consensus 145 ~~LPFEfraLEa~L~~v~~~Le~e~~~le~~~~~~---Ld~L~~~vs~~~ 191 (317)
..-|.|+--.|-+|.++++....++.........+ +..|..+|.+++
T Consensus 97 a~Rplel~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk 146 (338)
T KOG3647|consen 97 AQRPLELLEVEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRK 146 (338)
T ss_pred HcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 46688888888888888777777766655444333 456666776643
No 43
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=27.27 E-value=2.9e+02 Score=21.27 Aligned_cols=37 Identities=24% Similarity=0.491 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHhhh
Q 021130 193 DRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLY 230 (317)
Q Consensus 193 e~Lr~lK~~L~~l~~rv~~vr~~LeelLddDeDMa~My 230 (317)
.++..+...+..+....+....++++|-.=++| +.+|
T Consensus 12 ~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~-~~~y 48 (106)
T PF01920_consen 12 QQLQQLEQQIQQLERQLRELELTLEELEKLDDD-RKVY 48 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT--EEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhH
Confidence 356667777888888888888888887777777 4555
No 44
>PF02583 Trns_repr_metal: Metal-sensitive transcriptional repressor; InterPro: IPR003735 This entry describes proteins of unknown function.; PDB: 2HH7_A 3AAI_A 4ADZ_B.
Probab=25.09 E-value=1e+02 Score=23.87 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCChhHH
Q 021130 196 RKLKSAMTRLTARVQKVRDELEQLLDDDDDM 226 (317)
Q Consensus 196 r~lK~~L~~l~~rv~~vr~~LeelLddDeDM 226 (317)
..+.+||..+++.+.+|..+|++==+..+-+
T Consensus 5 ~~ll~RL~rIeGQv~gI~~Miee~~~C~dIl 35 (85)
T PF02583_consen 5 KDLLNRLKRIEGQVRGIERMIEEDRDCEDIL 35 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTE-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 4577888899999988888887633333433
No 45
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=24.91 E-value=9.1e+02 Score=26.16 Aligned_cols=33 Identities=30% Similarity=0.328 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021130 149 FEFRALEVALEAICSFLAARTTELETAAYPALDE 182 (317)
Q Consensus 149 FEfraLEa~L~~v~~~Le~e~~~le~~~~~~Ld~ 182 (317)
|+-|| +.+|-.+|..|+.....|+..-..+..+
T Consensus 225 F~~ra-~~~fp~a~e~L~~r~~~L~~k~~~L~~e 257 (683)
T PF08580_consen 225 FQSRA-ESIFPSACEELEDRYERLEKKWKKLEKE 257 (683)
T ss_pred HHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788 8888888888888888877765554443
No 46
>PRK09458 pspB phage shock protein B; Provisional
Probab=24.12 E-value=68 Score=24.74 Aligned_cols=24 Identities=8% Similarity=0.180 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhhhhcccccc
Q 021130 290 MQIDSTLNKLSTVRTFFLCFSSVY 313 (317)
Q Consensus 290 ~qvD~i~~~l~~L~e~IddTEd~i 313 (317)
++++++.++++.|++.|+..|+|.
T Consensus 42 ~~L~~L~~~A~rm~~RI~tLE~IL 65 (75)
T PRK09458 42 QRLAQLTEKAERMRERIQALEAIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666554
No 47
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=23.89 E-value=4.3e+02 Score=24.52 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 021130 162 CSFLAARTTELETAAYPALDELT 184 (317)
Q Consensus 162 ~~~Le~e~~~le~~~~~~Ld~L~ 184 (317)
+..|...+..++.....++.++.
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~ 25 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVE 25 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666654
No 48
>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional
Probab=23.51 E-value=98 Score=24.56 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021130 197 KLKSAMTRLTARVQKVRDELEQ 218 (317)
Q Consensus 197 ~lK~~L~~l~~rv~~vr~~Lee 218 (317)
.+.+||..+++.|++|..++++
T Consensus 10 ~ll~RL~RIeGQv~gI~~Miee 31 (90)
T PRK15039 10 KLKARASKIQGQVVALKKMLDE 31 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC
Confidence 4778899999999888888875
No 49
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=23.36 E-value=4e+02 Score=21.45 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021130 194 RVRKLKSAMTRLTARVQKVRDELE 217 (317)
Q Consensus 194 ~Lr~lK~~L~~l~~rv~~vr~~Le 217 (317)
.++.|+-.++++.++++.+...|+
T Consensus 66 dv~~L~l~l~el~G~~~~l~~~l~ 89 (106)
T PF10805_consen 66 DVHDLQLELAELRGELKELSARLQ 89 (106)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344555555555555555444443
No 50
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=23.35 E-value=3.5e+02 Score=24.09 Aligned_cols=87 Identities=14% Similarity=0.216 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhCCCcccccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021130 107 IPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTSK 186 (317)
Q Consensus 107 ~~f~~~L~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPFEfraLEa~L~~v~~~Le~e~~~le~~~~~~Ld~L~~~ 186 (317)
.+|++...+||+..-... + .+ .+......|-.=|.=|...-+.+-+.|+.|.+.++..+.. |+.+.
T Consensus 78 ~Qfv~hAt~KLr~iv~~t---s--an------cs~QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~-le~~~-- 143 (171)
T PF04799_consen 78 RQFVDHATEKLRLIVSFT---S--AN------CSHQVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQR-LEEIQ-- 143 (171)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--
T ss_pred HHHHHHHHHHHHHHHHHH---h--cc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--
Confidence 467877888876432100 0 00 0112234556667777777777777777777776665443 23222
Q ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHH
Q 021130 187 ISSRNLDRVRKLKSAMTRLTARVQKVR 213 (317)
Q Consensus 187 vs~~~Le~Lr~lK~~L~~l~~rv~~vr 213 (317)
.+...||++-+.|..+...|.
T Consensus 144 ------~~~k~LrnKa~~L~~eL~~F~ 164 (171)
T PF04799_consen 144 ------SKSKTLRNKANWLESELERFQ 164 (171)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHH
Confidence 134445555555555444443
No 51
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=23.26 E-value=5.1e+02 Score=24.29 Aligned_cols=81 Identities=20% Similarity=0.334 Sum_probs=45.1
Q ss_pred CCCchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHh----------hccChhhHHHHHHHHHHHHHHHHH
Q 021130 145 DESPFEFRALEVALEAICSFL---AARTTELETAAYPA---LDELT----------SKISSRNLDRVRKLKSAMTRLTAR 208 (317)
Q Consensus 145 ~~LPFEfraLEa~L~~v~~~L---e~e~~~le~~~~~~---Ld~L~----------~~vs~~~Le~Lr~lK~~L~~l~~r 208 (317)
.+.|.+++++.+-+...-..+ +-++..++..+... ++++. +.+++ ...++.|...+.....+
T Consensus 27 ~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~--~~e~~aL~~E~~~ak~r 104 (239)
T COG1579 27 KEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKD--ERELRALNIEIQIAKER 104 (239)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHHH
Confidence 366777877776655443333 22333333333322 22222 23333 34677777777777777
Q ss_pred HHHHHHHHHHhhCChhHHH
Q 021130 209 VQKVRDELEQLLDDDDDMA 227 (317)
Q Consensus 209 v~~vr~~LeelLddDeDMa 227 (317)
.....+.|.++++--+-+.
T Consensus 105 ~~~le~el~~l~~~~~~l~ 123 (239)
T COG1579 105 INSLEDELAELMEEIEKLE 123 (239)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777776555443
No 52
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=22.93 E-value=8.8e+02 Score=25.66 Aligned_cols=70 Identities=16% Similarity=0.239 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhh-ccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 021130 153 ALEVALEAICSFLAARTTELETAAYPA----------LDELTS-KISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLD 221 (317)
Q Consensus 153 aLEa~L~~v~~~Le~e~~~le~~~~~~----------Ld~L~~-~vs~~~Le~Lr~lK~~L~~l~~rv~~vr~~LeelLd 221 (317)
.+..++..+ ..++.++..++...... +.+|+. +.....-+.|-.-+++|...+.-.+.+.++++-+=+
T Consensus 158 ~~~~~y~~w-~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~rLsn~ekl~~~~~~a~~~L~g 236 (557)
T COG0497 158 AYQEAYQAW-KQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLSNSEKLAEAIQNALELLSG 236 (557)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhC
Confidence 355555443 33445555554444333 344443 455566788888899999988888888777765543
Q ss_pred Ch
Q 021130 222 DD 223 (317)
Q Consensus 222 dD 223 (317)
++
T Consensus 237 e~ 238 (557)
T COG0497 237 ED 238 (557)
T ss_pred CC
Confidence 33
No 53
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=22.72 E-value=4.4e+02 Score=21.68 Aligned_cols=39 Identities=23% Similarity=0.454 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021130 172 LETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRD 214 (317)
Q Consensus 172 le~~~~~~Ld~L~~~vs~~~Le~Lr~lK~~L~~l~~rv~~vr~ 214 (317)
++..+..+|..| ++-+ -+.+..|+.++.+|+.++..+..
T Consensus 79 ~~~~v~~~L~~l--g~~t--k~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 79 FDERVEQALNRL--NIPS--REEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred HHHHHHHHHHHc--CCCC--HHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444555544 2222 23566677888888888776653
No 54
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=22.50 E-value=3.6e+02 Score=20.71 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=14.1
Q ss_pred CCchHHHHHHHHHHHHHH
Q 021130 275 ENDVEELEMLLEAYFMQI 292 (317)
Q Consensus 275 ~~d~eElEmLLE~Y~~qv 292 (317)
.++.+|-|++|+.|...+
T Consensus 55 ~~~r~E~eail~~Y~~AL 72 (74)
T PF10073_consen 55 PDEREEEEAILDLYMSAL 72 (74)
T ss_pred HhHHHHHHHHHHHHHHHh
Confidence 457788899999998654
No 55
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=22.42 E-value=1.2e+02 Score=26.34 Aligned_cols=36 Identities=28% Similarity=0.283 Sum_probs=31.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 021130 277 DVEELEMLLEAYFMQIDSTLNKLSTVRTFFLCFSSV 312 (317)
Q Consensus 277 d~eElEmLLE~Y~~qvD~i~~~l~~L~e~IddTEd~ 312 (317)
+-+.+|-+|..++.+++++.+.++.+.+.+...++.
T Consensus 40 ~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 75 (151)
T PF14584_consen 40 DGKNLEDLLNELFDQIDELKEELEELEKRIEELEEK 75 (151)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999998877653
No 56
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=22.36 E-value=7.2e+02 Score=24.06 Aligned_cols=136 Identities=11% Similarity=0.118 Sum_probs=70.9
Q ss_pred HHHHHHHhCCC---CCcccccCCCCCCCeeeeecCCeEEee-------------cccceeEEeeCceeecCCCCCChHHH
Q 021130 46 KHAIMHRVQIH---ARDLRILDPLLSYPSTILGREQAIVLN-------------LEHIKAIITSEEVLLRDPLDEHVIPV 109 (317)
Q Consensus 46 K~~L~~~~gL~---~RDLR~lD~~~s~~psIlvR~~aIlvn-------------L~~iraII~~d~vllfd~~~~~~~~f 109 (317)
...+.+.+|++ .-|+.-+..+ |-+...++++.+| .++|--|+..+.++-+-..++. .
T Consensus 39 ~~~v~~~~gl~~pt~~~~eeIe~s----sR~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fil~~~~LvTvr~~~~~---~ 111 (316)
T PRK11085 39 RLRVQSELGQSLATRPELEDIEAS----ARFFEDEDGLHIHSFFFFEDAEDHAGNSTVAFTIRDGRLFTLRERELP---A 111 (316)
T ss_pred HHHHHHHhCCCCCChhhHHHHhhC----ceEEEECCeEEEEEEEEecCCCCCccceeEEEEEECCEEEEEecCCcc---h
Confidence 55577789998 7777766544 3333344443333 3445566777776666555543 2
Q ss_pred HHHHHHhhCCCcccccCCCCCCCCCCCCCCCCCCCCCCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021130 110 VAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPF--EFRALEVALEAICSFLAARTTELETAAYPALDELTSKI 187 (317)
Q Consensus 110 ~~~L~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPF--EfraLEa~L~~v~~~Le~e~~~le~~~~~~Ld~L~~~v 187 (317)
...+++|+..... ...-|+ =+..||++.+.....||.-...++.....++.. -
T Consensus 112 f~~~~~r~~~~~~---------------------~~~~~~~vl~~Lld~iVd~~ad~lE~~~~~ld~ls~~if~~----~ 166 (316)
T PRK11085 112 FRLYRMRARSQTL---------------------VDGNAYELLLDLFETKIEQLADEIENIYSDLEKLSRVIMEG----H 166 (316)
T ss_pred HHHHHHHHHhCCc---------------------ccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccC----C
Confidence 3455566643210 001121 234456655555555555555444444444321 0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021130 188 SSRNLDRVRKLKSAMTRLTARVQKVRDEL 216 (317)
Q Consensus 188 s~~~Le~Lr~lK~~L~~l~~rv~~vr~~L 216 (317)
.+.. ++.+-+++..+...+.++|+++
T Consensus 167 ~~~~---~~~~l~~i~~l~~~~~~~r~~l 192 (316)
T PRK11085 167 QGDE---YDEALSTLAELEDIGWKVRLCL 192 (316)
T ss_pred Cchh---HHHHHHHHHHHHHHHHHHHHHH
Confidence 1112 3444467777777777777776
No 57
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=22.05 E-value=4.9e+02 Score=23.21 Aligned_cols=56 Identities=20% Similarity=0.322 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021130 164 FLAARTTELETAAYPALDELTSKISS--RNLDRVRKLKSAMTRLTARVQKVRDELEQL 219 (317)
Q Consensus 164 ~Le~e~~~le~~~~~~Ld~L~~~vs~--~~Le~Lr~lK~~L~~l~~rv~~vr~~Leel 219 (317)
.|..-...|...+.....+|+..|.. ...++|=.+.++++.|.+++.-+...|+.+
T Consensus 106 eL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F 163 (171)
T PF04799_consen 106 ELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERF 163 (171)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555556666554433 344566667777777777877777777654
No 58
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=21.74 E-value=6.4e+02 Score=23.29 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccChhhHHHHHHHHHHHHHHHHHH
Q 021130 150 EFRALEVALEAICSFLAARTTELETAAYPALDELT--SKISSRNLDRVRKLKSAMTRLTARV 209 (317)
Q Consensus 150 EfraLEa~L~~v~~~Le~e~~~le~~~~~~Ld~L~--~~vs~~~Le~Lr~lK~~L~~l~~rv 209 (317)
+.+.|-..+....+.+++++..++.....+.+... ..++..|-..+..++.+...+....
T Consensus 175 ~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~ 236 (264)
T PF06008_consen 175 ENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQ 236 (264)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555444555555556666665555555544442 2233333334444444443333333
No 59
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=21.40 E-value=4e+02 Score=21.41 Aligned_cols=28 Identities=32% Similarity=0.621 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 021130 195 VRKLKSAMTRLTARVQKVRDELEQLLDD 222 (317)
Q Consensus 195 Lr~lK~~L~~l~~rv~~vr~~LeelLdd 222 (317)
+-.++-.+..+..+++.|...++=||++
T Consensus 74 l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 74 LAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356777888888888877766666654
No 60
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=20.84 E-value=3.4e+02 Score=25.49 Aligned_cols=54 Identities=20% Similarity=0.423 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHH-h--hccChhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhCC
Q 021130 169 TTELETAAYPALDEL-T--SKISSRNLDRVRKLKSAMTR---LTARVQKVRDELEQLLDD 222 (317)
Q Consensus 169 ~~~le~~~~~~Ld~L-~--~~vs~~~Le~Lr~lK~~L~~---l~~rv~~vr~~LeelLdd 222 (317)
+.++...|..+++.- . .+|+...|..||.+.++|.. +..++..+.++|+++|+.
T Consensus 173 ~~Eia~~A~~~~~~~~~gk~~v~~kal~~lr~i~~Kl~~lsFld~~v~~l~~~i~~~L~~ 232 (257)
T PF11348_consen 173 FDEIAQEARDILEKSFAGKDQVSQKALSPLRRIRDKLAGLSFLDPRVAPLVDMIDAVLNS 232 (257)
T ss_pred HHHHHHHHHHHHHhhhcCcccccHhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHh
Confidence 344555566666544 2 35888889999999888655 568999999999998863
No 61
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=20.61 E-value=5.2e+02 Score=21.82 Aligned_cols=64 Identities=17% Similarity=0.418 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc---cC--hhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhCChhHH
Q 021130 163 SFLAARTTELETAAYPALDELTSK---IS--SRNLDRVRKLKSAMTRLTARVQK---VRDELEQLLDDDDDM 226 (317)
Q Consensus 163 ~~Le~e~~~le~~~~~~Ld~L~~~---vs--~~~Le~Lr~lK~~L~~l~~rv~~---vr~~LeelLddDeDM 226 (317)
+.|.+..+.++.....++..+..+ .+ ...|+++..++..|.++..-.+. .-+.|.++|-.++-+
T Consensus 52 ~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~~~lL~~~v~~ie~LN~~LP~~~RL 123 (131)
T PF10158_consen 52 NALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRCQSLLNQTVPSIETLNEILPEEERL 123 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhcC
Confidence 345555555555555555555421 11 13566666666666665555444 345555566555543
No 62
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=20.08 E-value=6.4e+02 Score=24.87 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021130 201 AMTRLTARVQKVRDELEQ 218 (317)
Q Consensus 201 ~L~~l~~rv~~vr~~Lee 218 (317)
.|..++.|++.+...+++
T Consensus 262 ~Ld~i~~rl~~L~~~~~~ 279 (388)
T PF04912_consen 262 KLDSIERRLKSLLSELEE 279 (388)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566666655555554
Done!