Query 021130
Match_columns 317
No_of_seqs 121 out of 338
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 13:10:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021130.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021130hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rkg_A Magnesium transporter M 100.0 1.2E-69 4E-74 503.5 27.8 231 26-315 15-252 (261)
2 3nvo_A Zinc transport protein 95.7 0.61 2.1E-05 41.7 17.0 149 46-223 55-217 (264)
3 4ev6_A Magnesium transport pro 95.0 1.1 3.8E-05 41.9 16.8 151 46-221 63-225 (339)
4 2iub_A CORA, divalent cation t 94.6 1.2 4E-05 42.2 15.9 151 46-222 85-250 (363)
5 4egw_A Magnesium transport pro 93.3 3.5 0.00012 37.2 16.0 151 46-221 63-225 (280)
6 3ck6_A Putative membrane trans 87.1 7.9 0.00027 34.0 12.2 143 46-223 44-201 (252)
7 2bbh_A Divalent cation transpo 83.4 11 0.00038 33.3 11.4 71 153-223 172-242 (269)
8 3swf_A CGMP-gated cation chann 80.5 10 0.00035 28.0 8.1 49 158-214 5-53 (74)
9 2hn1_A CORA, magnesium and cob 66.0 14 0.00047 32.8 7.0 150 46-223 81-242 (266)
10 3p8c_D Wiskott-aldrich syndrom 64.9 18 0.00062 33.3 7.6 57 153-210 25-81 (279)
11 3swy_A Cyclic nucleotide-gated 63.1 31 0.0011 23.1 6.6 44 158-209 3-46 (46)
12 3v86_A De novo design helix; c 47.8 38 0.0013 19.6 4.2 25 195-219 2-26 (27)
13 1t3u_A Conserved hypothetical 39.3 42 0.0014 25.6 4.8 66 155-226 25-101 (104)
14 3ci9_A Heat shock factor-bindi 34.7 81 0.0028 21.2 5.0 22 292-313 26-47 (48)
15 3zcc_A HAMP, osmolarity sensor 33.8 1.2E+02 0.0041 21.5 6.6 36 148-183 36-71 (114)
16 3fyr_A Sporulation inhibitor S 30.9 27 0.00091 23.7 2.0 12 282-293 9-20 (48)
17 4fla_A Regulation of nuclear P 27.7 2.6E+02 0.0088 23.1 9.2 74 152-226 71-150 (152)
18 3hhm_B NISH2 P85alpha; PI3KCA, 26.4 3.5E+02 0.012 25.5 9.9 65 152-217 161-229 (373)
19 3v6c_B Ubiquitin; structural g 26.2 1.1E+02 0.0037 22.2 5.1 41 24-64 14-62 (91)
20 3ljm_A Coil Ser L9C; de novo d 24.9 1.1E+02 0.0039 18.1 3.9 18 158-175 6-23 (31)
21 1txp_A HnRNP C, heterogeneous 24.6 85 0.0029 18.7 3.2 23 197-219 3-25 (28)
22 2dfs_A Myosin-5A; myosin-V, in 23.0 5.1E+02 0.017 28.0 11.4 27 197-223 981-1007(1080)
23 3mq9_A Bone marrow stromal ant 22.8 2.8E+02 0.0096 26.2 8.6 25 194-218 444-468 (471)
24 2hh7_A Hypothetical protein CS 21.9 72 0.0025 25.5 3.4 33 197-229 11-43 (119)
25 3aai_A Copper homeostasis oper 21.2 66 0.0022 24.5 3.0 24 196-219 14-37 (94)
26 1ku9_A Hypothetical protein MJ 21.2 2.7E+02 0.0091 20.9 7.2 42 176-217 107-148 (152)
27 1m1j_A Fibrinogen alpha subuni 21.1 3.5E+02 0.012 26.6 8.6 29 279-307 114-142 (491)
28 3zqe_A Protein PRGI, cell inva 21.0 4.9E+02 0.017 24.0 9.3 62 157-220 11-79 (305)
29 4dnd_A Syntaxin-10, SYN10; str 20.7 3.2E+02 0.011 21.7 9.4 64 150-216 64-128 (130)
30 3szr_A Interferon-induced GTP- 20.5 2.4E+02 0.0084 28.0 7.9 16 277-292 519-534 (608)
No 1
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-69 Score=503.46 Aligned_cols=231 Identities=24% Similarity=0.381 Sum_probs=217.8
Q ss_pred ceeEEEEEcCCCCeEEEe--eeHHHHHHHhCCCCCcccccCCCC-CCCeeeeecCCeEEeecccceeEEeeCceeecCCC
Q 021130 26 SSRSWILLDAAGNSTVLD--VDKHAIMHRVQIHARDLRILDPLL-SYPSTILGREQAIVLNLEHIKAIITSEEVLLRDPL 102 (317)
Q Consensus 26 ~~~~~~~~d~~G~~~~~~--~~K~~L~~~~gL~~RDLR~lD~~~-s~~psIlvR~~aIlvnL~~iraII~~d~vllfd~~ 102 (317)
...+||+||++|+++.++ ++|++||+++||+|||||+|||++ +++|+|++|++||||||+||||||++|+|||||+.
T Consensus 15 ~~~~ct~fD~~G~~~~~~~~~~K~~l~~~~~L~~RDLR~ld~~~~~~~PsIl~R~~aIlvnL~~irAII~~d~Vllfd~~ 94 (261)
T 3rkg_A 15 LFISCTVFNSKGNIISMSEKFPKWSFLTEHSLFPRDLRKIDNSSIDIIPTIMCKPNCIVINLLHIKALIERDKVYVFDTT 94 (261)
T ss_dssp GEEEEEEECTTSCEEEEEEEEEHHHHHHHTTCCGGGGGGTSSCCSSCCCEEEECSSCEEEEETTEEEEECSSCEEEECCS
T ss_pred ceEEEEEECCCCCEEEecccccHHHHHHHcCCChhhHHHhcccccCCCceEEecCCeEEEechhceEEEEcceEEEEcCC
Confidence 379999999999999986 999999999999999999999986 68899999999999999999999999999999999
Q ss_pred CCChH----HHHHHHHHhhCCCcccccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021130 103 DEHVI----PVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYP 178 (317)
Q Consensus 103 ~~~~~----~f~~~L~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPFEfraLEa~L~~v~~~Le~e~~~le~~~~~ 178 (317)
++.+. .|+++|+.|+.+.+ ..++|||||||||||.+||+.|++++..+++.+++
T Consensus 95 ~~~~~~~~~~f~~~l~~~l~~~~----------------------~~~lPFEfraLEa~L~~v~~~Le~e~~~l~~~~~~ 152 (261)
T 3rkg_A 95 NPSAAAKLSVLMYDLESKLSSTK----------------------NNSQFYEHRALESIFINVMSALETDFKLHSQICIQ 152 (261)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCSS----------------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhhHHHHHHHHHHHhccCC----------------------CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98665 59999999997531 35899999999999999999999999999999999
Q ss_pred HHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHhhhhhhccCCCCCCCCCCCCCCCCCCCCccc
Q 021130 179 ALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWFPASPTIGS 258 (317)
Q Consensus 179 ~Ld~L~~~vs~~~Le~Lr~lK~~L~~l~~rv~~vr~~LeelLddDeDMa~MyLT~k~~~~~~~~~~~~~~~~~~~~~~~~ 258 (317)
+|++|+++|++.+|++|+..|++|++|.+||++||++|+++||||+||+.||||+|+.
T Consensus 153 ~L~~L~~~i~~~~L~~Ll~~~k~L~~~~~kv~~vr~~leelLddDeDm~~myLT~k~~---------------------- 210 (261)
T 3rkg_A 153 ILNDLENEVNRLKLRHLLIKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKS---------------------- 210 (261)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHTCCSSCCC----------------------
T ss_pred HHHHHHhcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhhccCCCC----------------------
Confidence 9999999999999999999999999999999999999999999999999999999943
Q ss_pred ccccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 021130 259 KISRASRASLATIRGDENDVEELEMLLEAYFMQIDSTLNKLSTVRTFFLCFSSVYHF 315 (317)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~d~eElEmLLE~Y~~qvD~i~~~l~~L~e~IddTEd~i~~ 315 (317)
..++|+|+|||||+||+|+|+++|++.+|+++|+|||++|.|
T Consensus 211 ---------------~~~d~eElEmLLE~Y~~q~d~~~~~~~~L~~~I~~TEe~i~i 252 (261)
T 3rkg_A 211 ---------------PKDNFSDLEMLIETYYTQCDEYVQQSESLIQDIKSTEEIVNI 252 (261)
T ss_dssp ---------------TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 256999999999999999999999999999999999999975
No 2
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=95.71 E-value=0.61 Score=41.66 Aligned_cols=149 Identities=9% Similarity=0.022 Sum_probs=96.3
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCeeeeecCCeEEe--------------ecccceeEEeeCceeecCCCCCChHHHHH
Q 021130 46 KHAIMHRVQIHARDLRILDPLLSYPSTILGREQAIVL--------------NLEHIKAIITSEEVLLRDPLDEHVIPVVA 111 (317)
Q Consensus 46 K~~L~~~~gL~~RDLR~lD~~~s~~psIlvR~~aIlv--------------nL~~iraII~~d~vllfd~~~~~~~~f~~ 111 (317)
...|.+.+||++=-+.-+-.. ...|.+-.=++.+++ ...+|..+++.+.|+-|..... .++.
T Consensus 55 ~~~l~~~~~l~~l~~ed~~~~-~~rpk~e~~~~~~fivl~~~~~~~~~~~~~~~~v~~~l~~~~lITv~~~~~---~~~~ 130 (264)
T 3nvo_A 55 ARWLASTPLLPNNVRDALAGE-SSRPRVSRMGEGTLITLRCINGSTDERPDQLVAMRLYMDERFIVSTRQRKV---LALD 130 (264)
T ss_dssp HHHHHHCTTSCTTTHHHHTTC-CCSCEEEEETTEEEEEEECC----------CCEEEEEECSSEEEEEESSCC---HHHH
T ss_pred HHHHHhccCCCHHHHHHHhCC-CCCCceEEECCEEEEEEEecccCCCCCCcceEEEEEEEeCCEEEEEecCCc---CcHH
Confidence 455777899998776633321 345555555555444 3456777888887777754432 4566
Q ss_pred HHHHhhCCCcccccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhh
Q 021130 112 ELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRN 191 (317)
Q Consensus 112 ~L~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPFEfraLEa~L~~v~~~Le~e~~~le~~~~~~Ld~L~~~vs~~~ 191 (317)
.+.+++..... . .-| -.+|-++|..++..+-.-+..++..+..+=+.+-.+ +...
T Consensus 131 ~v~~rl~~~~~---------------------~-~~~--~~ll~~lld~ivd~y~~~l~~l~~~id~lE~~l~~~-~~~~ 185 (264)
T 3nvo_A 131 DVVSDLQEGTG---------------------P-VDC--GGWLVDVCDALTDHASEFIEELHDKIIDLEDNLLDQ-QIPP 185 (264)
T ss_dssp HHHHHHHTTCS---------------------C-SSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----CCCC
T ss_pred HHHHHHHhCCC---------------------C-CCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Cchh
Confidence 77777754210 0 112 246777777777777776766666654443333333 4567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCh
Q 021130 192 LDRVRKLKSAMTRLTARVQKVRDELEQLLDDD 223 (317)
Q Consensus 192 Le~Lr~lK~~L~~l~~rv~~vr~~LeelLddD 223 (317)
+.++..+|+.|..|..-+.-.++++..+...+
T Consensus 186 l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 217 (264)
T 3nvo_A 186 RGFLALLRKQLIVMRRYMAPQRDVYARLASER 217 (264)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC
Confidence 88999999999999999999999999987654
No 3
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=94.96 E-value=1.1 Score=41.90 Aligned_cols=151 Identities=14% Similarity=0.090 Sum_probs=93.2
Q ss_pred HHHHHHHhCCCCCccc-ccCCCCCCCeeeeecCCeEEe-----------ecccceeEEeeCceeecCCCCCChHHHHHHH
Q 021130 46 KHAIMHRVQIHARDLR-ILDPLLSYPSTILGREQAIVL-----------NLEHIKAIITSEEVLLRDPLDEHVIPVVAEL 113 (317)
Q Consensus 46 K~~L~~~~gL~~RDLR-~lD~~~s~~psIlvR~~aIlv-----------nL~~iraII~~d~vllfd~~~~~~~~f~~~L 113 (317)
...|.+.+||++=.+. .+|+. ..|.+-.-++.+++ ...+|..+++.+.++-|..... +.+..+
T Consensus 63 ~~~l~~~~~l~~~~~ed~l~~~--~rpk~e~~~~~~~iv~~~~~~~~~~~~~~v~i~l~~~~lITv~~~~~---~~~~~~ 137 (339)
T 4ev6_A 63 LYKLSKKIGISVSDLQIGLDEQ--EIPRVEEDEDFYLIIYKAPLFEEDITTTSLGIYIKNNLLLTIHSDKI---KAIGRL 137 (339)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTT--CCCEEEEETTEEEEECCCCCCTTTCCCCCCEEEEETTEEEEEESSCC---HHHHHH
T ss_pred HHHHHHHHCcCHhHHHHhhCCc--cCCeEEEECCEEEEEEecCccCCCcceEEEEEEEECCeeEEeecCCc---chhHHH
Confidence 4557888999986555 23332 34444444444332 2346777888777777754432 456678
Q ss_pred HHhhCCCcccccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHH
Q 021130 114 QRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLD 193 (317)
Q Consensus 114 ~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPFEfraLEa~L~~v~~~Le~e~~~le~~~~~~Ld~L~~~vs~~~Le 193 (317)
.+++...... .....-|. -+|-++|..++..+..-+..++.....+-+.+-.+.+...++
T Consensus 138 ~~~~~~~~~~------------------~~~~~~~~--~ll~~lld~ivd~~~~~l~~l~~~i~~lE~~l~~~~~~~~l~ 197 (339)
T 4ev6_A 138 HKLISTKKPR------------------IVFERGIG--FLLYHILNEITRSYSRILMNLEDELEELEDKLLAGYDREVME 197 (339)
T ss_dssp HHHSSSSSSC------------------CCCCSCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHH
T ss_pred HHHHHcCCCc------------------cccccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Confidence 8887643210 00011121 255667777777776666666666444444444445667889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 021130 194 RVRKLKSAMTRLTARVQKVRDELEQLLD 221 (317)
Q Consensus 194 ~Lr~lK~~L~~l~~rv~~vr~~LeelLd 221 (317)
++..+++.|..+..-+...++++..+..
T Consensus 198 ~l~~lrr~l~~lrr~l~~~~~vl~~L~~ 225 (339)
T 4ev6_A 198 KILGLRKTLVYFHKSLIANRDVLVLLKR 225 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhh
Confidence 9999999999999999888888877653
No 4
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=94.55 E-value=1.2 Score=42.20 Aligned_cols=151 Identities=16% Similarity=0.138 Sum_probs=87.8
Q ss_pred HHHHHHHhCCCCCcccc-cCCCCCCCeeeeecCCeEE--------------eecccceeEEeeCceeecCCCCCChHHHH
Q 021130 46 KHAIMHRVQIHARDLRI-LDPLLSYPSTILGREQAIV--------------LNLEHIKAIITSEEVLLRDPLDEHVIPVV 110 (317)
Q Consensus 46 K~~L~~~~gL~~RDLR~-lD~~~s~~psIlvR~~aIl--------------vnL~~iraII~~d~vllfd~~~~~~~~f~ 110 (317)
...|.+.+||++=-+.- +++ ...|.+-.-++.++ +..++|-.++..+.|+-|..... +.+
T Consensus 85 ~~~l~~~f~l~~l~ied~l~~--~~rpk~e~~~~~lfivl~~~~~~~~~~~~~~~~v~~~l~~~~liTv~~~~~---~~~ 159 (363)
T 2iub_A 85 VQRVGEFFGIHPLVLEDILNV--HQRPKVEFFENYVFIVLKMFTYDKNLHELESEQVSLILTKNCVLMFQEKIG---DVF 159 (363)
T ss_dssp HHHHHHHTTCCHHHHHHHHCC--SSCCEEEEETTEEEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEESSSC---CSC
T ss_pred HHHHHHHcCcChhHHHHHhCC--CCCCeEEEECCEEEEEEEeeeecccccccceEEEEEEEECCEEEEEEeCCC---chH
Confidence 34466778888644432 222 23444444444442 23345666777676665644332 123
Q ss_pred HHHHHhhCCCcccccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChh
Q 021130 111 AELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSR 190 (317)
Q Consensus 111 ~~L~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPFEfraLEa~L~~v~~~Le~e~~~le~~~~~~Ld~L~~~vs~~ 190 (317)
..+.+|+..... .....-|. -+|-++|..++..+-.-+..++..+..+=+.+-.+-+..
T Consensus 160 ~~v~~rl~~~~~-------------------~~~~~~~~--~ll~~lld~ivd~y~~~l~~l~~~id~lE~~v~~~~~~~ 218 (363)
T 2iub_A 160 DPVRERIRYNRG-------------------IIRKKRAD--YLLYSLIDALVDDYFVLLEKIDDEIDVLEEEVLERPEKE 218 (363)
T ss_dssp HHHHHHHHTTCT-------------------TTTTSCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCHH
T ss_pred HHHHHHHHhcCC-------------------ccccCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 455556543210 00001121 245566667766666666666666555444444444456
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 021130 191 NLDRVRKLKSAMTRLTARVQKVRDELEQLLDD 222 (317)
Q Consensus 191 ~Le~Lr~lK~~L~~l~~rv~~vr~~LeelLdd 222 (317)
.++++..+|+.+..+..-+...+++|..+...
T Consensus 219 ~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~ 250 (363)
T 2iub_A 219 TVQRTHQLKRNLVELRKTIWPLREVLSSLYRD 250 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78999999999999999999999999999864
No 5
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=93.28 E-value=3.5 Score=37.22 Aligned_cols=151 Identities=15% Similarity=0.118 Sum_probs=91.8
Q ss_pred HHHHHHHhCCCCCcccc-cCCCCCCCeeeeecCCeEEe-----------ecccceeEEeeCceeecCCCCCChHHHHHHH
Q 021130 46 KHAIMHRVQIHARDLRI-LDPLLSYPSTILGREQAIVL-----------NLEHIKAIITSEEVLLRDPLDEHVIPVVAEL 113 (317)
Q Consensus 46 K~~L~~~~gL~~RDLR~-lD~~~s~~psIlvR~~aIlv-----------nL~~iraII~~d~vllfd~~~~~~~~f~~~L 113 (317)
...|.+.+||+|=.+.- +++. ..|.+-.-++.+++ ...+|..+++.+.++-|..... +.+..+
T Consensus 63 l~~l~~~f~lh~l~leD~l~~~--~rpKie~~~d~~fivl~~~~~~~~~~t~~v~i~l~~~~lITv~~~~~---~~~~~v 137 (280)
T 4egw_A 63 LYKLSKKIGISVSDLQIGLDEQ--EIPRVEEDEDFYLIIYKAPLFEEDITTTSLGIYIKNNLLLTIHSDKI---KAIGRL 137 (280)
T ss_dssp HHHHHHHHTCCHHHHHHHTCTT--CCCEEECCSSSEEEEEEEEECSSSCEEEEEEEEEETTEEEEEESSCC---HHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHhCcc--cCceEEEECCEEEEEEEeccccccceeeeEEEEEECCEEEEEecCCc---chHHHH
Confidence 45678889999866652 3332 33444333333222 2345777888887777754433 345566
Q ss_pred HHhhCCCcccccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHH
Q 021130 114 QRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLD 193 (317)
Q Consensus 114 ~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPFEfraLEa~L~~v~~~Le~e~~~le~~~~~~Ld~L~~~vs~~~Le 193 (317)
.+++....... ....+.. -+|=++|..++..+-.-+..++..+..+=+.+-.+.+...+.
T Consensus 138 ~~~l~~~~~~~-----------------~~~~g~~---~ll~~lld~ivd~y~~~l~~i~~~id~lE~~l~~~~~~~~l~ 197 (280)
T 4egw_A 138 HKLISTKKPRI-----------------VFERGIG---FLLYHILNEITRSYSRILMNLEDELEELEDKLLAGYDREVME 197 (280)
T ss_dssp HHHHHHSCCSS-----------------SCTTTTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred HHHHHhcCccc-----------------ccccCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 67664322100 0001111 244555666666665556666666555555555566778899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 021130 194 RVRKLKSAMTRLTARVQKVRDELEQLLD 221 (317)
Q Consensus 194 ~Lr~lK~~L~~l~~rv~~vr~~LeelLd 221 (317)
++..+|+.|..|..-+.-.|+++..+..
T Consensus 198 ~i~~lrr~l~~lrr~l~p~~~vl~~L~~ 225 (280)
T 4egw_A 198 KILGLRKTLVYFHKSLIANRDVLVLLKR 225 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 9999999999999999999999988754
No 6
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=87.12 E-value=7.9 Score=34.04 Aligned_cols=143 Identities=9% Similarity=0.130 Sum_probs=85.2
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCeeeeecCC-eE--Eeec------------ccceeEEeeCceeecCCCCCChHHHH
Q 021130 46 KHAIMHRVQIHARDLRILDPLLSYPSTILGREQ-AI--VLNL------------EHIKAIITSEEVLLRDPLDEHVIPVV 110 (317)
Q Consensus 46 K~~L~~~~gL~~RDLR~lD~~~s~~psIlvR~~-aI--lvnL------------~~iraII~~d~vllfd~~~~~~~~f~ 110 (317)
...|.+. ||++=-+.-+-.. ...|.+-.-++ .+ +++. ..+..+++.+.|+-|..... +.+
T Consensus 44 ~~~l~~~-~l~~l~~ed~l~~-~~rpk~e~~~d~~lfivl~~~~~~~~~~~~~~~~l~i~l~~~~lITvr~~~~---~~~ 118 (252)
T 3ck6_A 44 RGWLEDN-HVPRATVDHLLAD-ESRPSFHPLDDDNFMLILRGINMNENASPEDMLSIRILYFQGALISTRKIPS---RAI 118 (252)
T ss_dssp HHHHHHT-TCCHHHHHHHHCS-SCCCEEEECSTTCEEEEEEECCCSTTCCTTSCEEEEEEEETTEEEEEESSCC---HHH
T ss_pred HHHHHHc-CCCHHHHHHHhCC-CCCCceEEeCCceEEEEEecCccCCCCCcccEEEEEEEEeCCEEEEEeCCCc---chH
Confidence 4456666 8887544322211 24556666666 55 2232 22455777777766644332 345
Q ss_pred HHHHHhhCCCcccccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChh
Q 021130 111 AELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSR 190 (317)
Q Consensus 111 ~~L~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPFEfraLEa~L~~v~~~Le~e~~~le~~~~~~Ld~L~~~vs~~ 190 (317)
..+.+++..+.. ..-|.. +|-++|..++..+-.-+..++.. +++|+.. ..
T Consensus 119 ~~v~~~l~~~~~----------------------~~~~~~--ll~~lld~ivd~y~~~l~~l~~~----id~lE~~--~~ 168 (252)
T 3ck6_A 119 MEIRQALAEHKG----------------------PKSLAS--LLNQIIEGLNGKIDLYLDTIEET----LNEFDVN--DE 168 (252)
T ss_dssp HHHHHHHHTTCS----------------------CSSHHH--HHHHHHHHHHHHHHHHHHHHHHH----HHTCCTT--CG
T ss_pred HHHHHHHHhCCC----------------------CCCHHH--HHHHHHHHHHHHHHHHHHHHHHH----HHHHHcC--ch
Confidence 566677643210 012332 44467777776665555444443 4555544 23
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCh
Q 021130 191 NLDRVRKLKSAMTRLTARVQKVRDELEQLLDDD 223 (317)
Q Consensus 191 ~Le~Lr~lK~~L~~l~~rv~~vr~~LeelLddD 223 (317)
.+.++..+|+.+..|..-+...|+++..++..+
T Consensus 169 ~~~~l~~lrr~l~~lrr~l~p~r~~l~~L~r~~ 201 (252)
T 3ck6_A 169 STYNHIAAQKALISIKRFIRPQQYAIRDLIESE 201 (252)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 577899999999999999999999999997654
No 7
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=83.40 E-value=11 Score=33.32 Aligned_cols=71 Identities=15% Similarity=0.208 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCh
Q 021130 153 ALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDD 223 (317)
Q Consensus 153 aLEa~L~~v~~~Le~e~~~le~~~~~~Ld~L~~~vs~~~Le~Lr~lK~~L~~l~~rv~~vr~~LeelLddD 223 (317)
+|-++|..++..+-.-+..++..+..+=+.+-.+-+...+.++..+|+.+..|..-+.-.+++|..++..+
T Consensus 172 ll~~lld~ivd~y~~~l~~i~~~id~lE~~v~~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 242 (269)
T 2bbh_A 172 LLYSLIDALVDDYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDV 242 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34456666666655555555554333333332222346789999999999999999999999999998754
No 8
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=80.53 E-value=10 Score=28.02 Aligned_cols=49 Identities=24% Similarity=0.253 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021130 158 LEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRD 214 (317)
Q Consensus 158 L~~v~~~Le~e~~~le~~~~~~Ld~L~~~vs~~~Le~Lr~lK~~L~~l~~rv~~vr~ 214 (317)
++.-+..|++-+..|......+|.+.++. =..||+|++.++.+++.+++
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ss--------Q~KLKqRit~LE~~~~~~~~ 53 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESM--------QQKLKQRLTKVEKFLKPLID 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcccCC
Confidence 45667888888888888888888887652 23589999999999887554
No 9
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=66.04 E-value=14 Score=32.77 Aligned_cols=150 Identities=15% Similarity=0.147 Sum_probs=88.9
Q ss_pred HHHHHHHhCCCCCcccc-cCCCCCCCeeeeecCCeE--Ee---------ecccceeEEeeCceeecCCCCCChHHHHHHH
Q 021130 46 KHAIMHRVQIHARDLRI-LDPLLSYPSTILGREQAI--VL---------NLEHIKAIITSEEVLLRDPLDEHVIPVVAEL 113 (317)
Q Consensus 46 K~~L~~~~gL~~RDLR~-lD~~~s~~psIlvR~~aI--lv---------nL~~iraII~~d~vllfd~~~~~~~~f~~~L 113 (317)
...|.+.+||++=-+-- +++ ...|.+-.=++++ ++ ..+.|-.++..+.|+-|...... .+..+
T Consensus 81 ~~~l~~~f~l~~l~~ed~l~~--~~rpk~e~~~d~lfivl~~~~~~~~~~~~~v~~~l~~~~lITv~~~~~~---~~~~v 155 (266)
T 2hn1_A 81 IAKICEFLGIHPLAAEDILNT--AQRVKIEDYDDHLFLVLKILLYNETLEIDQLSLVLKKNLVATFEEREYW---ILDSI 155 (266)
T ss_dssp HHHHHHTTTCCHHHHHHHHBT--TCCSEEEECSSEEEEEEEEEEESSSEEEEEEEEEEETTEEEEEESSSSC---STHHH
T ss_pred HHHHHHHcCCCHhHHHHHhCC--CCCCeEEEECCEEEEEEEeccccCccceEEEEEEEECCEEEEEEcCCCC---hHHHH
Confidence 45566778888743332 122 2344554444444 22 23456667777777666433221 23455
Q ss_pred HHhhCCCcccccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHH
Q 021130 114 QRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLD 193 (317)
Q Consensus 114 ~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPFEfraLEa~L~~v~~~Le~e~~~le~~~~~~Ld~L~~~vs~~~Le 193 (317)
.+|+...... ...-|. -+|-++|..++..+-.-+..++..+..+=+.+-.+-+ ..+.
T Consensus 156 ~~rl~~~~~~--------------------~~~~~~--~ll~~lld~ivd~y~~~l~~i~~~id~lE~~l~~~~~-~~l~ 212 (266)
T 2hn1_A 156 RSRLKSGGRM--------------------RKLAGD--YLAYTILDAVVDSYFEALLKISDEIEVLEDEVVSGDS-TLIG 212 (266)
T ss_dssp HHHHHSSSHH--------------------HHSCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-CCCC
T ss_pred HHHHHhCCch--------------------hhcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH-HHHH
Confidence 5665422100 000111 2456677777777766666666666665555544334 6788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCh
Q 021130 194 RVRKLKSAMTRLTARVQKVRDELEQLLDDD 223 (317)
Q Consensus 194 ~Lr~lK~~L~~l~~rv~~vr~~LeelLddD 223 (317)
++..+|+.+..|..-+.-.+++|..++..+
T Consensus 213 ~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 242 (266)
T 2hn1_A 213 KIHSLKREILAFRNAVWPLRDVLSFFTRVE 242 (266)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999998653
No 10
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=64.91 E-value=18 Score=33.28 Aligned_cols=57 Identities=23% Similarity=0.204 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHH
Q 021130 153 ALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQ 210 (317)
Q Consensus 153 aLEa~L~~v~~~Le~e~~~le~~~~~~Ld~L~~~vs~~~Le~Lr~lK~~L~~l~~rv~ 210 (317)
.||++-..+...+=.++..|...|..+..+|...++.. -+|+..|+.|+..|+.+|.
T Consensus 25 eLe~V~n~tL~gilRQL~dLs~~A~dIF~eL~~e~~~~-~~R~~~L~~RI~~L~~~v~ 81 (279)
T 3p8c_D 25 ELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAHSF-SFRVNSLQERVDRLSVSVT 81 (279)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 48999899999999999999999999999998765432 2455556666666665554
No 11
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=63.06 E-value=31 Score=23.10 Aligned_cols=44 Identities=25% Similarity=0.292 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHH
Q 021130 158 LEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARV 209 (317)
Q Consensus 158 L~~v~~~Le~e~~~le~~~~~~Ld~L~~~vs~~~Le~Lr~lK~~L~~l~~rv 209 (317)
++.-+..||+-+..|......+|.+.++. =..||+|++.++.+|
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ss--------q~KlKqRit~lE~~v 46 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNAT--------QMKMKQRLSQLESQV 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcC
Confidence 45667788888888888888888887642 234899999988764
No 12
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=47.84 E-value=38 Score=19.56 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 021130 195 VRKLKSAMTRLTARVQKVRDELEQL 219 (317)
Q Consensus 195 Lr~lK~~L~~l~~rv~~vr~~Leel 219 (317)
+-++|..+.++.+.|+.+++++.++
T Consensus 2 vyqlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 2 VYQLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHhHHHHHHHHHhcc
Confidence 3467888888888888888877654
No 13
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=39.29 E-value=42 Score=25.60 Aligned_cols=66 Identities=18% Similarity=0.350 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhccChhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhCCh
Q 021130 155 EVALEAICSFLAARTTELETAAY-------PALDELTSKISSRNLDRVRKLKSA----MTRLTARVQKVRDELEQLLDDD 223 (317)
Q Consensus 155 Ea~L~~v~~~Le~e~~~le~~~~-------~~Ld~L~~~vs~~~Le~Lr~lK~~----L~~l~~rv~~vr~~LeelLddD 223 (317)
|..|..+...++.++..+..... -+|-.| ++. +.+..++.+ +..+..++..+...|++.|.++
T Consensus 25 ee~l~~aA~~vd~~~~~i~~~~~~~~~~r~~vmaAL--nla----del~~~~~~~~~~~~~~~~~i~~L~~~le~aL~~~ 98 (104)
T 1t3u_A 25 RANLESAARYLDGKMREIRSSGKVIGADRVAVMAAL--NIT----HDLLHRKERLDQESSSTRERVRELLDRVDRALANP 98 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCSCSHHHHHHHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56777888888888887765421 112222 111 234444443 7788999999999999998776
Q ss_pred hHH
Q 021130 224 DDM 226 (317)
Q Consensus 224 eDM 226 (317)
...
T Consensus 99 ~~~ 101 (104)
T 1t3u_A 99 ADA 101 (104)
T ss_dssp ---
T ss_pred ccc
Confidence 543
No 14
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=34.67 E-value=81 Score=21.21 Aligned_cols=22 Identities=5% Similarity=0.072 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhhhhcccccc
Q 021130 292 IDSTLNKLSTVRTFFLCFSSVY 313 (317)
Q Consensus 292 vD~i~~~l~~L~e~IddTEd~i 313 (317)
-++|+.|+..+...|||.|.-|
T Consensus 26 S~~I~~riDdM~~RIDdLE~si 47 (48)
T 3ci9_A 26 SDQIIGRIDDMSSRIDDLEKNI 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHhHHHHHHhhc
Confidence 4788999999999999998654
No 15
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=33.82 E-value=1.2e+02 Score=21.52 Aligned_cols=36 Identities=14% Similarity=0.035 Sum_probs=24.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021130 148 PFEFRALEVALEAICSFLAARTTELETAAYPALDEL 183 (317)
Q Consensus 148 PFEfraLEa~L~~v~~~Le~e~~~le~~~~~~Ld~L 183 (317)
+=|+..|-..+......|..........+..+-.+|
T Consensus 36 ~dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel 71 (114)
T 3zcc_A 36 ADEIGILAKSIERLRRSLKQLADDGTLLMAGVSHDL 71 (114)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 568999988888888888776665444444443333
No 16
>3fyr_A Sporulation inhibitor SDA; helical hairpin, histidine kinase inhibitor, sporulation regulation, alternative initiation; 1.97A {Bacillus subtilis} SCOP: a.2.12.1 PDB: 1pv0_A 3d36_C*
Probab=30.85 E-value=27 Score=23.67 Aligned_cols=12 Identities=42% Similarity=0.921 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHH
Q 021130 282 EMLLEAYFMQID 293 (317)
Q Consensus 282 EmLLE~Y~~qvD 293 (317)
|+|+|+|++.++
T Consensus 9 e~LiesY~~A~e 20 (48)
T 3fyr_A 9 ELLIESYFKATE 20 (48)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 899999999863
No 17
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=27.73 E-value=2.6e+02 Score=23.05 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhccChhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhCChhH
Q 021130 152 RALEVALEAICSFLAARTTELETAAYP---ALDELTSKISSRNLDRVRKLKSAM---TRLTARVQKVRDELEQLLDDDDD 225 (317)
Q Consensus 152 raLEa~L~~v~~~Le~e~~~le~~~~~---~Ld~L~~~vs~~~Le~Lr~lK~~L---~~l~~rv~~vr~~LeelLddDeD 225 (317)
..|...+..+|..|+.-...|+..+.. ++..|..-... --+.+...+..+ ..+..||..|+..|+..+++=.|
T Consensus 71 e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~-~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sLPD 149 (152)
T 4fla_A 71 ERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQN-QKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSLPD 149 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 556667777777777777776665443 33333321111 112333444444 44556677788888887766555
Q ss_pred H
Q 021130 226 M 226 (317)
Q Consensus 226 M 226 (317)
+
T Consensus 150 l 150 (152)
T 4fla_A 150 L 150 (152)
T ss_dssp -
T ss_pred c
Confidence 4
No 18
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=26.42 E-value=3.5e+02 Score=25.46 Aligned_cols=65 Identities=14% Similarity=0.295 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhh----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021130 152 RALEVALEAICSFLAARTTELETAAYPALDELTSKISSRN----LDRVRKLKSAMTRLTARVQKVRDELE 217 (317)
Q Consensus 152 raLEa~L~~v~~~Le~e~~~le~~~~~~Ld~L~~~vs~~~----Le~Lr~lK~~L~~l~~rv~~vr~~Le 217 (317)
.|+| |+..+...++.+...-|.-....++.....-.... ++.-..||++|.++..--+++.+.|+
T Consensus 161 ~a~~-af~~~~~~f~~q~~~~e~~~~~~~~~~~~~~~~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~ 229 (373)
T 3hhm_B 161 TAIE-AFNETIKIFEEQCQTQERYSKEYIEKFKREGNEKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLK 229 (373)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666 67778888888887777766666665543223222 23444577777777666555544444
No 19
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=26.21 E-value=1.1e+02 Score=22.16 Aligned_cols=41 Identities=22% Similarity=0.291 Sum_probs=29.7
Q ss_pred CCceeEEEEEcCCCCeEEEeee--------HHHHHHHhCCCCCcccccC
Q 021130 24 TRSSRSWILLDAAGNSTVLDVD--------KHAIMHRVQIHARDLRILD 64 (317)
Q Consensus 24 ~~~~~~~~~~d~~G~~~~~~~~--------K~~L~~~~gL~~RDLR~lD 64 (317)
....+...+-..+|....++++ |..|....|+++-+.|.+-
T Consensus 14 ~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 62 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 62 (91)
T ss_dssp CCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEE
Confidence 3445777777778876655432 7888889999999988653
No 20
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=24.87 E-value=1.1e+02 Score=18.06 Aligned_cols=18 Identities=33% Similarity=0.541 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021130 158 LEAICSFLAARTTELETA 175 (317)
Q Consensus 158 L~~v~~~Le~e~~~le~~ 175 (317)
|+.-|..||+++..||+.
T Consensus 6 lekkcaalesklqalekk 23 (31)
T 3ljm_A 6 LEKKCAALESKLQALEKK 23 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456677788877777665
No 21
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=24.56 E-value=85 Score=18.70 Aligned_cols=23 Identities=22% Similarity=0.543 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 021130 197 KLKSAMTRLTARVQKVRDELEQL 219 (317)
Q Consensus 197 ~lK~~L~~l~~rv~~vr~~Leel 219 (317)
-+|+.|+++.++|..+-+.|+.+
T Consensus 3 ~IkkELtQIK~kvDsLLe~Le~~ 25 (28)
T 1txp_A 3 AIKKELTQIKQKVDSLLENLEKI 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 46777888887777766666653
No 22
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=22.96 E-value=5.1e+02 Score=27.97 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCh
Q 021130 197 KLKSAMTRLTARVQKVRDELEQLLDDD 223 (317)
Q Consensus 197 ~lK~~L~~l~~rv~~vr~~LeelLddD 223 (317)
.++.++..++..+...++.++++...-
T Consensus 981 ~~~~~v~~L~~e~~~l~~~~~~~~ke~ 1007 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLRKELHQTQTEK 1007 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555544433
No 23
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=22.80 E-value=2.8e+02 Score=26.15 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021130 194 RVRKLKSAMTRLTARVQKVRDELEQ 218 (317)
Q Consensus 194 ~Lr~lK~~L~~l~~rv~~vr~~Lee 218 (317)
++..+-..++.+.++++..+..+++
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 24
>2hh7_A Hypothetical protein CSOR; 4-helix bundle, unknown function; 2.55A {Mycobacterium tuberculosis}
Probab=21.94 E-value=72 Score=25.54 Aligned_cols=33 Identities=12% Similarity=0.058 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCChhHHHhh
Q 021130 197 KLKSAMTRLTARVQKVRDELEQLLDDDDDMADL 229 (317)
Q Consensus 197 ~lK~~L~~l~~rv~~vr~~LeelLddDeDMa~M 229 (317)
.+.+||.++++.++.|..+||+==+..+-+..+
T Consensus 11 ~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~Ql 43 (119)
T 2hh7_A 11 AALNRLKTVRGHLDGIVRMLESDAYCVDVMKQI 43 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 467788888888888888887654444444433
No 25
>3aai_A Copper homeostasis operon regulatory protein; all alpha proteins, 4-helix bundle, transcription; 2.10A {Thermus thermophilus}
Probab=21.20 E-value=66 Score=24.52 Aligned_cols=24 Identities=8% Similarity=0.145 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 021130 196 RKLKSAMTRLTARVQKVRDELEQL 219 (317)
Q Consensus 196 r~lK~~L~~l~~rv~~vr~~Leel 219 (317)
..+.+||..+++.+++|..+||+=
T Consensus 14 ~~~l~RLkRieGQv~gI~rMiEe~ 37 (94)
T 3aai_A 14 EEARRRLLSAKGHLEGILRMLEDE 37 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 357789999999999988888753
No 26
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=21.16 E-value=2.7e+02 Score=20.91 Aligned_cols=42 Identities=17% Similarity=0.340 Sum_probs=26.1
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021130 176 AYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELE 217 (317)
Q Consensus 176 ~~~~Ld~L~~~vs~~~Le~Lr~lK~~L~~l~~rv~~vr~~Le 217 (317)
+.+.++.+...++....+.+..+-..+..+...+.++.+.+.
T Consensus 107 ~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~ 148 (152)
T 1ku9_A 107 TYEDLKKLEEKCNEEEKEFIKQKIKGIERMKKISEKILEALN 148 (152)
T ss_dssp HHHHHHHHHHHSCTTSHHHHHHHHHHHTHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666667777766766666666666666655554443
No 27
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=21.09 E-value=3.5e+02 Score=26.57 Aligned_cols=29 Identities=10% Similarity=0.222 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021130 279 EELEMLLEAYFMQIDSTLNKLSTVRTFFL 307 (317)
Q Consensus 279 eElEmLLE~Y~~qvD~i~~~l~~L~e~Id 307 (317)
+|||-=.++--.-|++-++.|..|+..|+
T Consensus 114 ~eLe~ri~yIK~kVd~qi~~IrvLq~~l~ 142 (491)
T 1m1j_A 114 TELRRRIVTLKQRVATQVNRIKALQNSIQ 142 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343333333444444444444444443
No 28
>3zqe_A Protein PRGI, cell invasion protein SIPD; cell invasion complex, type III secretion, T3 complex, HOST pathogen interaction; HET: DXC; 2.19A {Salmonella enterica subsp} PDB: 3zqb_A* 2kv7_A 2x9c_A 2lpz_A 2jow_A
Probab=21.04 E-value=4.9e+02 Score=24.02 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhh
Q 021130 157 ALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARV-------QKVRDELEQLL 220 (317)
Q Consensus 157 ~L~~v~~~Le~e~~~le~~~~~~Ld~L~~~vs~~~Le~Lr~lK~~L~~l~~rv-------~~vr~~LeelL 220 (317)
-|..|...|+.........+..+++.|..+-+.. ..|-.+...+++-...+ +.+++.+.-++
T Consensus 11 ~ld~v~~~~~~~a~~~~~~v~~ai~~l~~~~~np--~~l~~~Q~~~~~~s~~~n~~s~~~k~~kd~~~~Ii 79 (305)
T 3zqe_A 11 YLDDVSAKFDTGVDNLQTQVTEALDKLAAKPSDP--ALLAAYQSKLSEYNLYRNAQSNTVKVFKDIDAAII 79 (305)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999999998766543 24555555555544433 44555555544
No 29
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=20.70 E-value=3.2e+02 Score=21.75 Aligned_cols=64 Identities=16% Similarity=0.144 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021130 150 EFRALEVALEAICSFLAARTTELETAAYPALDELTS-KISSRNLDRVRKLKSAMTRLTARVQKVRDEL 216 (317)
Q Consensus 150 EfraLEa~L~~v~~~Le~e~~~le~~~~~~Ld~L~~-~vs~~~Le~Lr~lK~~L~~l~~rv~~vr~~L 216 (317)
||.-+=.=|..+|..++..+..|+..+.-+-..=.+ +++... +-.-|+-+..+...|..+++.|
T Consensus 64 E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~E---i~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 64 ELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGD---LQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 677777778888888888888887776654322111 354443 4445666777778887777765
No 30
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=20.46 E-value=2.4e+02 Score=28.03 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=13.3
Q ss_pred chHHHHHHHHHHHHHH
Q 021130 277 DVEELEMLLEAYFMQI 292 (317)
Q Consensus 277 d~eElEmLLE~Y~~qv 292 (317)
...|+-.++.+||+-+
T Consensus 519 ~~~ei~~~l~sY~~iv 534 (608)
T 3szr_A 519 SMEEIFQHLMAYHQEA 534 (608)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4567999999999975
Done!