Query 021131
Match_columns 317
No_of_seqs 242 out of 1120
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 07:50:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021131.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021131hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2132 Uncharacterized conser 100.0 1.8E-55 3.9E-60 409.6 14.7 262 45-316 22-285 (355)
2 PF13621 Cupin_8: Cupin-like d 99.9 1.5E-27 3.3E-32 216.9 8.8 151 167-317 1-167 (251)
3 KOG2508 Predicted phospholipas 99.9 7.8E-23 1.7E-27 192.9 9.9 159 158-317 23-198 (437)
4 KOG2130 Phosphatidylserine-spe 99.9 3.1E-22 6.8E-27 186.2 8.4 158 151-317 48-217 (407)
5 KOG2131 Uncharacterized conser 99.2 2.9E-11 6.3E-16 115.2 5.5 160 157-317 28-236 (427)
6 COG2850 Uncharacterized conser 98.0 1.2E-05 2.5E-10 77.7 7.1 140 162-316 12-154 (383)
7 PF08007 Cupin_4: Cupin superf 97.6 6.4E-05 1.4E-09 72.3 5.1 35 282-316 115-150 (319)
8 smart00558 JmjC A domain famil 97.1 0.00064 1.4E-08 48.5 3.5 28 283-310 28-57 (57)
9 KOG1356 Putative transcription 89.7 0.52 1.1E-05 50.4 5.3 139 164-308 527-701 (889)
10 KOG3706 Uncharacterized conser 87.7 0.33 7.1E-06 49.0 2.1 36 281-316 317-353 (629)
11 PF12854 PPR_1: PPR repeat 38.8 52 0.0011 20.5 3.3 27 67-95 6-32 (34)
12 KOG1633 F-box protein JEMMA an 26.9 41 0.0009 36.5 2.2 85 227-317 63-164 (776)
13 cd03572 ENTH_epsin_related ENT 25.6 1.3E+02 0.0029 25.0 4.5 68 24-116 18-85 (122)
No 1
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-55 Score=409.56 Aligned_cols=262 Identities=41% Similarity=0.626 Sum_probs=216.1
Q ss_pred HHHHHHhhhccccCCCCCcHHHHHHHHHHHHHHhhhccCccHHHHHHHhHhHhhccCCcChhhHHHHHHHHHhhhhcCCc
Q 021131 45 ARDLAWEQLHSGPWHSVLPVWRDAYSMACLHGAKYHYRNGEFKEALRVLDMGVLMGGPVLRKDLDSAIETLSLKAREGEN 124 (317)
Q Consensus 45 ~~~~a~ekL~~g~w~~V~~~wR~~Y~~~~l~~~~~~~~~~~~~~~i~~lD~~limgg~~~~~~l~~~~~~~~~~~~~~~~ 124 (317)
++++||||||||||++|+..||++|+++|++++++.++++.+..|++ ||||+|||+......+....+.+. .+..
T Consensus 22 ~l~~awe~l~tg~~~~v~~~wr~~y~~~c~~~~~~~~~~~~~~~al~-~D~gllmg~~~~~d~~l~va~~~~----~~~~ 96 (355)
T KOG2132|consen 22 ALDPAWEKLNTGHWSFVDRVWRRLYAIACLAKALIEFQAPLVYAALK-LDMGLLMGNIGLGDSLLKVASELK----FGYY 96 (355)
T ss_pred ccCchhhhhccCccccCCchHHHHHHHHHHHHHHhhcccchhHHHHh-hCHHHHhhchhcchHHHHHHHHhh----ccCc
Confidence 58999999999999999999999999999999999999999999999 999999999876332322221221 1111
Q ss_pred ccccccccccchhhhhhhhhhcccCCCCCcCCCcccccCCCCHHHHHHhhhcCCCcEEEecCCCCCccccCCCCHHHHHH
Q 021131 125 ERFGEREANRLVSEEFNTAKALQVLPNRSLSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKR 204 (317)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~I~Rv~~~S~e~F~~~y~~~~~PvVI~g~~~~WPA~~kWs~~~YL~~ 204 (317)
+...-...-...+ +.........+|.... +..+++.+.+++++|+.+++.+++|++++|.+.||||+++|+ ++|+..
T Consensus 97 ~~~~~~~~~~~~p-~~e~~~~~~~ip~~~~-~~~~~~~~~~~l~~~l~d~~~~~~p~~~l~~~~hwpa~~kw~-l~~l~~ 173 (355)
T KOG2132|consen 97 SDKPAAVALNFKP-NREENKVHEFIPKVQL-EIDVPGEDRLSLQEFLNDTVGRGTPVILLGFNWHWPAIQKWS-LGYLQQ 173 (355)
T ss_pred ccchhhhhccCCC-Cccccccccccchhhh-hhhhccccchHHHHHHHHhhcCCCceEEecccccchHhhhcc-hhHHHh
Confidence 0000000000000 1112223444565543 567888899999999999999999999999999999999996 999999
Q ss_pred hhCCccEEEEeccccccCCceeeeecHHHHHHHHHhCCCCCCcccccccccchhhhHHhhhccCCCCccccCCCCC--cc
Q 021131 205 VAGDRTVPVEVGKNYLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGEL--RS 282 (317)
Q Consensus 205 ~~G~r~VpVe~g~~y~~~~w~q~~mt~~eFl~~~~~~~~~~~~~~YLaq~~L~~q~P~L~~Di~iPdy~~~~~~~~--~~ 282 (317)
..|.|+||||+|.+|.+++|+|..|++.+|+.+....+ +.+..|+|||.+|+|+|+|+.||.+||||+..+.+. ..
T Consensus 174 va~~rTvpvEvg~~y~~~~w~q~l~t~~~g~~R~~~~~--p~~~~YlAqh~lfdqi~elk~Di~iPDyc~~~~f~~~~v~ 251 (355)
T KOG2132|consen 174 VAGNRTVPVEVGSTYADEDWSQNLMTQIKGIKRCILFE--PRECLYLAQHHLFDQIPELKFDISIPDYCSFPNFENEVVD 251 (355)
T ss_pred cccceeeeeecccccchhHHHhhhHHHhhhhhhhhcCC--ccccchhhhhhhhccchhhhhccCCCceeecCCCCccccc
Confidence 99999999999999999999999999999999998876 457899999999999999999999999998765544 68
Q ss_pred eEEEEcCCCCCCCcccCccCceeEEEEeeEEEEe
Q 021131 283 LNAWFGPAGTVTPLHHDPHHNILAQYLCNNLSFF 316 (317)
Q Consensus 283 ~nlWiGp~gT~TpLH~Dp~~Nll~QV~G~Kr~~l 316 (317)
+|+|+||+||+||+|+|++||+++||.|+|+++|
T Consensus 252 ~~~w~GpaGtV~pih~dp~hNi~~qv~G~k~i~l 285 (355)
T KOG2132|consen 252 INAWIGPAGTVLPIHMDPWHNILSQVFGRKRIRL 285 (355)
T ss_pred eeEEeccCCceeccccccccceeeeeecceEEEE
Confidence 9999999999999999999999999999999987
No 2
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=99.94 E-value=1.5e-27 Score=216.88 Aligned_cols=151 Identities=38% Similarity=0.646 Sum_probs=117.5
Q ss_pred HHHHHHhhhcCCCcEEEecCCCCCccccCCCC----HHHHHHhhCCccEEEEeccc-----cc------cCCceeeeecH
Q 021131 167 LEGFLSEYFLSGSPVIITDCMAHWPARTNWND----LDYLKRVAGDRTVPVEVGKN-----YL------CQDWKQELIPF 231 (317)
Q Consensus 167 ~e~F~~~y~~~~~PvVI~g~~~~WPA~~kWs~----~~YL~~~~G~r~VpVe~g~~-----y~------~~~w~q~~mt~ 231 (317)
|++|+++|+.+++||||+|++.+|||+++|++ ++||.+.+|+..|+|..... +. ........|+|
T Consensus 1 p~eF~~~~~~~~~PvVi~g~~~~w~a~~~W~~~~~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (251)
T PF13621_consen 1 PEEFFERYVKPNKPVVIRGAAADWPAFQKWTDDEYLLDYLKEKYGDVPVPVRDSPNGISDSFGYNDDRKFVNFERERMPF 80 (251)
T ss_dssp -HHHHHHTCCTT--EEEESSSTTCCHHHH-S-----HHHHHHHHTSSEEEEEEEST--SSBTS-B-GCCCTCEEEEEEEH
T ss_pred CHHHHHHHhCCCCCEEEeCCccCCchhhhccchhHHHHHHHHHcCCeEEEEEecCCcccccccccccccccCCeeEECcH
Confidence 68999999999999999999999999999995 69999999999999986431 21 11246789999
Q ss_pred HHHHHHHHhCCC-CCCcccccccccchhhhHHhhhccCCCCccccCCCCCcceEEEEcCCCCCCCcccCccCceeEEEEe
Q 021131 232 SQFLERIQSNGS-SASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQYLC 310 (317)
Q Consensus 232 ~eFl~~~~~~~~-~~~~~~YLaq~~L~~q~P~L~~Di~iPdy~~~~~~~~~~~nlWiGp~gT~TpLH~Dp~~Nll~QV~G 310 (317)
++|++.+..... ......|+.+..+.+.+|.|.+|..+|.............++|||++|+.||||+|+.+||+|||.|
T Consensus 81 ~~f~~~~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ig~~gs~t~lH~D~~~n~~~~i~G 160 (251)
T PF13621_consen 81 RDFLDRLRANRDQRDKPYYYLQNWNLFEDFPELREDNDLPFPPELFGKEPQSSNLWIGPPGSFTPLHYDPSHNLLAQIRG 160 (251)
T ss_dssp HHHHHHHHHSCHSTSSSEEEEEEETHHHHSHHHHCCS-CHHHHCHSCCHCCEEEEEEE-TTEEEEEEE-SSEEEEEEEES
T ss_pred HHHHHHHHhcccccCCceEEEecCchHHHhhhhhhccccccchhhcccCccccEEEEeCCCceeeeeECchhhhhhccCC
Confidence 999999988752 1346799999999999999999866552111112234578999999999999999999999999999
Q ss_pred eEEEEeC
Q 021131 311 NNLSFFS 317 (317)
Q Consensus 311 ~Kr~~l~ 317 (317)
+|+|+|.
T Consensus 161 ~K~~~L~ 167 (251)
T PF13621_consen 161 RKRWILF 167 (251)
T ss_dssp EEEEEEE
T ss_pred CEEEEEE
Confidence 9999983
No 3
>KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism]
Probab=99.88 E-value=7.8e-23 Score=192.90 Aligned_cols=159 Identities=25% Similarity=0.422 Sum_probs=124.9
Q ss_pred cccccC-CCCHHHHHHhhhcCCCcEEEecCCCCCccccCCCCHHHHHHhhCCccEEEEeccc-cccCC-ce---------
Q 021131 158 LVVKRS-ALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKN-YLCQD-WK--------- 225 (317)
Q Consensus 158 ~I~Rv~-~~S~e~F~~~y~~~~~PvVI~g~~~~WPA~~kWs~~~YL~~~~G~r~VpVe~g~~-y~~~~-w~--------- 225 (317)
.|++.+ .||+-+|.++|+.+++||||+.+..||||+++|+.++||.+..|++.|.|++.++ |.+.. -+
T Consensus 23 ~v~~lD~~Ptpl~Fyr~fvs~n~PvIIrkAL~hWpal~lWs~p~Yl~~algd~vvsvaitPngyadgav~~g~e~f~~pa 102 (437)
T KOG2508|consen 23 LVNLLDLTPTPLDFYRKFVSTNTPVIIRKALPHWPALKLWSQPDYLLSALGDIVVSVAITPNGYADGAVMSGNEMFIKPA 102 (437)
T ss_pred ccccccCCCchHHHHHhhhcCCCcEEEecccccCchhhccCchHHHHHhccCeEEEEEeCCCCccccccccCcceeechh
Confidence 344554 6899999999999999999999999999999999888999999999999998765 33311 11
Q ss_pred eeeecHHHHHHHHHhCCCCCCccccccc--ccchhhhHHhhhccCCCCccccC---CCCCcceEEEEcCCCCCCCcccCc
Q 021131 226 QELIPFSQFLERIQSNGSSASVPTYLAQ--HQLFDQINELRNDICIPDYCFVG---GGELRSLNAWFGPAGTVTPLHHDP 300 (317)
Q Consensus 226 q~~mt~~eFl~~~~~~~~~~~~~~YLaq--~~L~~q~P~L~~Di~iPdy~~~~---~~~~~~~nlWiGp~gT~TpLH~Dp 300 (317)
.++|+++|-++.+.... .....+|+.+ .+|...+|.|.-|...-|+-++. +......|+|||...++|.||.|+
T Consensus 103 e~KlklsevL~vl~~~~-~~~~Vly~qkQ~snl~~elp~la~Dl~~~d~~wa~eafgk~PdavNlWiG~~~avTSlHkDh 181 (437)
T KOG2508|consen 103 EQKLKLSEVLYVLTQYD-ESNEVLYGQKQNSNLVKELPPLATDLLLTDFSWAPEAFGKVPDAVNLWIGKSEAVTSLHKDH 181 (437)
T ss_pred hhhccchhhheehhccc-CCCceeehhhhcccccccccccccccccccccccHHHhCCChhheeeeeccccccccccccc
Confidence 13566777766655543 2556899985 36667788888887765554321 234457899999999999999999
Q ss_pred cCceeEEEEeeEEEEeC
Q 021131 301 HHNILAQYLCNNLSFFS 317 (317)
Q Consensus 301 ~~Nll~QV~G~Kr~~l~ 317 (317)
|+|++|.|.|.|+|+|.
T Consensus 182 yENlYaViSGeKhFvli 198 (437)
T KOG2508|consen 182 YENLYAVISGEKHFVLI 198 (437)
T ss_pred ccceEEEEeccceEEEe
Confidence 99999999999999984
No 4
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=99.86 E-value=3.1e-22 Score=186.16 Aligned_cols=158 Identities=20% Similarity=0.359 Sum_probs=131.3
Q ss_pred CCCcCCCcccccCCCCHHHHHHhhhcCCCcEEEecCCCCCccccCCCCHHHHHHhhCCccEEEEeccccccCCceeeeec
Q 021131 151 NRSLSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWKQELIP 230 (317)
Q Consensus 151 ~~~~~~~~I~Rv~~~S~e~F~~~y~~~~~PvVI~g~~~~WPA~~kWs~~~YL~~~~G~r~VpVe~g~~y~~~~w~q~~mt 230 (317)
...+...++.|..++|.|+|.+.|-.+.+||||+|+.+.|||.++|+ .++|.+++|+..+.+. .+- +-....|+
T Consensus 48 ~~~~dn~~r~~~~~isveeF~~~ferp~kPVll~g~~DgW~A~ekWT-~drLskkyrnq~Fkcg--ed~---~gnsv~MK 121 (407)
T KOG2130|consen 48 PFFFDNGNRERRRNISVEEFIERFERPYKPVLLSGLTDGWPASEKWT-LDRLSKKYRNQKFKCG--EDN---NGNSVKMK 121 (407)
T ss_pred ccccccchhhhhcCCCHHHHHHHhcccCCceEeeccccCCchhhhhh-HHHHHHHhcCcccccc--ccC---CCcceeee
Confidence 33445567778889999999999999999999999999999999999 9999999999666543 321 11257899
Q ss_pred HHHHHHHHHhCCCCCCcccccccccchhhhH--HhhhccCCCCccc------cCCCCCcceEEE--EcCCCCCCCcccCc
Q 021131 231 FSQFLERIQSNGSSASVPTYLAQHQLFDQIN--ELRNDICIPDYCF------VGGGELRSLNAW--FGPAGTVTPLHHDP 300 (317)
Q Consensus 231 ~~eFl~~~~~~~~~~~~~~YLaq~~L~~q~P--~L~~Di~iPdy~~------~~~~~~~~~nlW--iGp~gT~TpLH~Dp 300 (317)
|..|++++.... ++.++|+.+..+.+..| .|.+|+.+|.||. ++ .+.....-| |||+++.|..|.||
T Consensus 122 mkyY~~Ym~~~R--ddsPLYiFDssFgE~~~~rkLl~dY~VPk~F~dDlF~y~g-~e~RPpyRWfvmGParSGtsiHIDP 198 (407)
T KOG2130|consen 122 MKYYIEYMKSTR--DDSPLYIFDSSFGEHAPRRKLLEDYSVPKYFRDDLFQYLG-EERRPPYRWFVMGPARSGTSIHIDP 198 (407)
T ss_pred HHHHHHHHhccc--cCCCeEEecchhhcccchhhhhhhcCcchhhhHHHHHhcC-cccCCCceeEEecCCCCCceeEECC
Confidence 999999999887 78899999999999988 9999999999874 22 222233444 79999999999999
Q ss_pred c--CceeEEEEeeEEEEeC
Q 021131 301 H--HNILAQYLCNNLSFFS 317 (317)
Q Consensus 301 ~--~Nll~QV~G~Kr~~l~ 317 (317)
. ..|.+.|.|+|||+|.
T Consensus 199 lgTSAWNtll~GhKrW~Lf 217 (407)
T KOG2130|consen 199 LGTSAWNTLLQGHKRWVLF 217 (407)
T ss_pred cchHHHHHHhhccceeEEc
Confidence 4 6789999999999984
No 5
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=99.16 E-value=2.9e-11 Score=115.25 Aligned_cols=160 Identities=16% Similarity=0.210 Sum_probs=103.6
Q ss_pred CcccccCC--CCHHHHHHhhhcCCCcEEEecCCCCCccc----cCCCC-----------HHHHHHhhCCccEEEEecccc
Q 021131 157 KLVVKRSA--LSLEGFLSEYFLSGSPVIITDCMAHWPAR----TNWND-----------LDYLKRVAGDRTVPVEVGKNY 219 (317)
Q Consensus 157 ~~I~Rv~~--~S~e~F~~~y~~~~~PvVI~g~~~~WPA~----~kWs~-----------~~YL~~~~G~r~VpVe~g~~y 219 (317)
..|+|... .+.+.|...|..++.||+|.++..+|++. ..|.+ ..|.+.+.-+-.++|.....-
T Consensus 28 ~~v~r~~g~~~d~~~~a~~~~~k~~~v~is~v~~d~~~~~~~~~s~~dl~~~~~l~n~~~~f~k~~v~~~~~~v~~~~~s 107 (427)
T KOG2131|consen 28 PCVLRLIGPTADYGDFAERDTHKRPGVLISYVLEDWPCVSRDNESGADLNNNPDLKNFARSFAKRIVQNGDKNVFLCDLS 107 (427)
T ss_pred hhhhhhcccccCcccchhhhcccCCCccccccccCcccccCCCcchhhhccCcchhHHHHHHhHHHHhcCCccccccccc
Confidence 35667665 67789999999999999999999999999 45552 224444333333444332111
Q ss_pred ccCCceeeeecHHHHHHHHHhCCC----------------------CCCcccccccccchhhhHHhhhccCCCCccccC-
Q 021131 220 LCQDWKQELIPFSQFLERIQSNGS----------------------SASVPTYLAQHQLFDQINELRNDICIPDYCFVG- 276 (317)
Q Consensus 220 ~~~~w~q~~mt~~eFl~~~~~~~~----------------------~~~~~~YLaq~~L~~q~P~L~~Di~iPdy~~~~- 276 (317)
...++....+++++|+..+..... ...+.+|+.++.|+.++|. -.-+..|++|...
T Consensus 108 ~f~~~~~Le~ny~d~~v~~a~~~e~e~~~l~lad~~~~e~~~~~~~~q~p~ly~kDwHL~~~~d~-~~~~~~pd~F~~dw 186 (427)
T KOG2131|consen 108 LFPDYEYLERNYGDFVVPVANCNEKERYSLKLADWEFREEQVQLACPQAPSLYGKDWHLYRFLDN-DFPYWTPDLFAKDW 186 (427)
T ss_pred cCccHHHHHhhhhhcchhhccccchhhhhhhhccchhHHHhHhhhcCCCccccccchheeeecCc-ccccccchhhhhcc
Confidence 112234456777777776654321 1344677777666665551 1112466665421
Q ss_pred -------CCCCcceEEEEcCCCCCCCcccCcc--CceeEEEEeeEEEEeC
Q 021131 277 -------GGELRSLNAWFGPAGTVTPLHHDPH--HNILAQYLCNNLSFFS 317 (317)
Q Consensus 277 -------~~~~~~~nlWiGp~gT~TpLH~Dp~--~Nll~QV~G~Kr~~l~ 317 (317)
.+.....++.+||+||.||+|.|.+ +.|.+.|+|+|+|+|.
T Consensus 187 lne~~i~~~~ddyrFvy~Gp~gSwtp~HaDVf~s~swS~nicG~KrWl~~ 236 (427)
T KOG2131|consen 187 LNEFVIDGESDDYRFVYAGPAGSWTPFHADVFHSPSWSVNICGRKRWLLY 236 (427)
T ss_pred cchhhccCCCCceeEEEeccCCCCCccchhhhcCCcceeeeecceeEEEe
Confidence 1122356899999999999999997 5789999999999983
No 6
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=1.2e-05 Score=77.73 Aligned_cols=140 Identities=18% Similarity=0.196 Sum_probs=81.5
Q ss_pred cCCCCHHHHHHhhhcCCCcEEEecCCCCCccccCCCCHHHHHHhhCCccEEEEeccccccCCceeeeecHHHHHHHHHhC
Q 021131 162 RSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWKQELIPFSQFLERIQSN 241 (317)
Q Consensus 162 v~~~S~e~F~~~y~~~~~PvVI~g~~~~WPA~~kWs~~~YL~~~~G~r~VpVe~g~~y~~~~w~q~~mt~~eFl~~~~~~ 241 (317)
...+|+++|+++|. .+||+||+|+..+ -..+-+ ++=|.+.+-...|.-..=....+..|.-..-+|.+|=..=.
T Consensus 12 ~~glt~~~FL~~YW-qkKPlliR~a~p~--~~~p~~-pdeLa~La~~edV~srLV~~~~~~~w~~~~gPfe~~d~~~~-- 85 (383)
T COG2850 12 PLGLTPEDFLRDYW-QKKPLLIRNAFPE--FHSPLS-PDELAGLAQEEDVTSRLVSHESDGTWQVSHGPFEEEDFLGL-- 85 (383)
T ss_pred cCCCCHHHHHHHHh-hhcchHHhhcccc--cccCCC-HHHHHHHhccccccchhhhhccCCceeEeeCccchhccccC--
Confidence 45789999999998 5699999999865 223333 45466655433333221112224557666666655432100
Q ss_pred CCCCCccccccc-ccc-hhhhHHhhhccC-CCCccccCCCCCcceEEEEcCCCCCCCcccCccCceeEEEEeeEEEEe
Q 021131 242 GSSASVPTYLAQ-HQL-FDQINELRNDIC-IPDYCFVGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQYLCNNLSFF 316 (317)
Q Consensus 242 ~~~~~~~~YLaq-~~L-~~q~P~L~~Di~-iPdy~~~~~~~~~~~nlWiGp~gT~TpLH~Dp~~Nll~QV~G~Kr~~l 316 (317)
+....-+.| .+. ..+.-.|-+-+. +|++ ...++.+-+.+.|..-.-|+|.|++|+.|..|+|||-+
T Consensus 86 ---p~~wsllvq~vd~w~p~v~~l~~~FrflP~w------r~ddiMIS~a~~GGgvg~H~D~YDVfliQg~G~RRW~v 154 (383)
T COG2850 86 ---PRNWSLLVQAVDHWHPEVAALMEPFRFLPDW------RIDDIMISFAAPGGGVGPHFDQYDVFLIQGQGRRRWRV 154 (383)
T ss_pred ---CcCceEEEehhhhcCHHHHHHHHHhccCccc------cccceEEEEecCCCccCccccchheeEEeecccceeec
Confidence 111112222 111 112233444444 6663 22345555777777778999999999999999999976
No 7
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=97.63 E-value=6.4e-05 Score=72.30 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=30.3
Q ss_pred ceEEEEcCCC-CCCCcccCccCceeEEEEeeEEEEe
Q 021131 282 SLNAWFGPAG-TVTPLHHDPHHNILAQYLCNNLSFF 316 (317)
Q Consensus 282 ~~nlWiGp~g-T~TpLH~Dp~~Nll~QV~G~Kr~~l 316 (317)
..|++++|+| ...+.|+|.+++|..|+.|+|+|.+
T Consensus 115 ~~n~Y~tp~g~~g~~~H~D~~dvfvlQ~~G~K~W~l 150 (319)
T PF08007_consen 115 GANAYLTPPGSQGFGPHYDDHDVFVLQLEGRKRWRL 150 (319)
T ss_dssp EEEEEEETSSBEESECEE-SSEEEEEEEES-EEEEE
T ss_pred ceEEEecCCCCCCccCEECCcccEEEECCceeEEEE
Confidence 5799999998 5778999999999999999999986
No 8
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=97.06 E-value=0.00064 Score=48.53 Aligned_cols=28 Identities=39% Similarity=0.431 Sum_probs=25.7
Q ss_pred eEEEEcCCCCCCCcccCccC--ceeEEEEe
Q 021131 283 LNAWFGPAGTVTPLHHDPHH--NILAQYLC 310 (317)
Q Consensus 283 ~nlWiGp~gT~TpLH~Dp~~--Nll~QV~G 310 (317)
.++|+|+.++.|++|+|+++ |++.|+.|
T Consensus 28 ~~~~~G~~~s~t~~H~d~~~~~n~~~~~~~ 57 (57)
T smart00558 28 PYLYMGMAGSVTPWHIDDYDLVNYLHQGAG 57 (57)
T ss_pred ceEEEeCCCCccceeEcCCCeEEEEEecCC
Confidence 79999999999999999999 99888765
No 9
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=89.72 E-value=0.52 Score=50.39 Aligned_cols=139 Identities=23% Similarity=0.286 Sum_probs=82.0
Q ss_pred CCCHHHHHHhhhcCCCcEEEecCCCCCccccCCCCHHHHHHhhCCccEEEEeccccccCCceeeee-cHHHHHHHHHhCC
Q 021131 164 ALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWKQELI-PFSQFLERIQSNG 242 (317)
Q Consensus 164 ~~S~e~F~~~y~~~~~PvVI~g~~~~WPA~~kWs~~~YL~~~~G~r~VpVe~g~~y~~~~w~q~~m-t~~eFl~~~~~~~ 242 (317)
.-....|++ +...++|||++|+.+.-... .|. +.-|...+|+..+.+.-+..-.- -...-| .|-||++.+....
T Consensus 527 ~~n~~~FQE-hWkqGqPViVs~V~~~l~g~-lW~-P~a~~~~~g~q~~~l~n~~~~~i--~s~d~~~~fwegFe~~~kr~ 601 (889)
T KOG1356|consen 527 QNNLKHFQE-HWKQGQPVIVSGVHKKLNGL-LWK-PEALSRAFGDQVVDLSNCNNSQI--ISNDCVDNFWEGFEGYSKRL 601 (889)
T ss_pred hhHHHHHHH-HHhcCCcEEehHhhhhcccc-ccc-hHHHHHHhccchhhhhcCCCCCc--cccchhhhHHHhhcccccCc
Confidence 334678886 55799999999998876654 798 88888888887766553222100 011223 3667776665443
Q ss_pred CC-C--Ccccccccc--------cchhhhHHhhhccCCCCccccCCCCC------------c--ceEEEE--------cC
Q 021131 243 SS-A--SVPTYLAQH--------QLFDQINELRNDICIPDYCFVGGGEL------------R--SLNAWF--------GP 289 (317)
Q Consensus 243 ~~-~--~~~~YLaq~--------~L~~q~P~L~~Di~iPdy~~~~~~~~------------~--~~nlWi--------Gp 289 (317)
.+ . ...+=|.+| .+..++.+|.+-+++|.|+... |.+ + .+.+|. |-
T Consensus 602 ~~~~g~p~vLKLKDWpp~~~Fkd~lP~r~eell~sLPlpEYt~r~-G~LNlAs~LP~~fv~PDLGPk~y~AYG~~~e~gr 680 (889)
T KOG1356|consen 602 KSENGWPEVLKLKDWPPGEDFKDMLPRRFEELLASLPLPEYTDRD-GKLNLASKLPEGFVRPDLGPKLYNAYGVSTELGR 680 (889)
T ss_pred ccccCCeeEEeecCCCchHhHhhhhhHHHHHHHHcCCchhhhcCC-CccchHhhCcccccCCCCCchhhhhccccccccC
Confidence 11 1 223445555 1223445677777899998632 211 0 123332 33
Q ss_pred CCCCCCcccCccC--ceeEEE
Q 021131 290 AGTVTPLHHDPHH--NILAQY 308 (317)
Q Consensus 290 ~gT~TpLH~Dp~~--Nll~QV 308 (317)
...+|-||.|.-+ |+++-|
T Consensus 681 ~~gtTnLH~dvSDaVNILvyv 701 (889)
T KOG1356|consen 681 GDGTTNLHLDVSDAVNILVYV 701 (889)
T ss_pred CCCceeeceehhhhhhheeee
Confidence 4568889999954 666543
No 10
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.67 E-value=0.33 Score=49.01 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=32.0
Q ss_pred cceEEEEcCCCC-CCCcccCccCceeEEEEeeEEEEe
Q 021131 281 RSLNAWFGPAGT-VTPLHHDPHHNILAQYLCNNLSFF 316 (317)
Q Consensus 281 ~~~nlWiGp~gT-~TpLH~Dp~~Nll~QV~G~Kr~~l 316 (317)
.-.|+++-|+|+ .-+.|||--+.|+.||.|||+|.|
T Consensus 317 vGaNvYLTPagSqGfaPHyDdIeaFvlQvEGrK~Wrl 353 (629)
T KOG3706|consen 317 VGANVYLTPAGSQGFAPHYDDIEAFVLQVEGRKHWRL 353 (629)
T ss_pred cccceeecCCCCCCCCCchhhhhhhhheeccceeeEe
Confidence 346999999887 567899999999999999999987
No 11
>PF12854 PPR_1: PPR repeat
Probab=38.80 E-value=52 Score=20.53 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhhccCccHHHHHHHhHh
Q 021131 67 DAYSMACLHGAKYHYRNGEFKEALRVLDM 95 (317)
Q Consensus 67 ~~Y~~~~l~~~~~~~~~~~~~~~i~~lD~ 95 (317)
..+|+.+|+.+.+ +.|++.+|++++|.
T Consensus 6 d~~ty~~lI~~~C--k~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYC--KAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHH--HCCCHHHHHHHHHh
Confidence 4678888876664 68999999998873
No 12
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=26.92 E-value=41 Score=36.51 Aligned_cols=85 Identities=13% Similarity=0.115 Sum_probs=50.2
Q ss_pred eeecHHHHHHHHHhCCCCCCcccccc------cccc--hhhhHHhhhccC-----CCCccccCCCCCcceE--EEEcCCC
Q 021131 227 ELIPFSQFLERIQSNGSSASVPTYLA------QHQL--FDQINELRNDIC-----IPDYCFVGGGELRSLN--AWFGPAG 291 (317)
Q Consensus 227 ~~mt~~eFl~~~~~~~~~~~~~~YLa------q~~L--~~q~P~L~~Di~-----iPdy~~~~~~~~~~~n--lWiGp~g 291 (317)
..|++.+|+++|..... .++|=- +..| +-+-|++.+++. .|+-+.. +-+.++ --|+-++
T Consensus 63 ~km~~~~~~~yy~~~~~---~R~yNVisLEfS~Trl~~~V~~P~ivr~ldwV~n~wP~~~~~---~~P~vqkyclmsv~~ 136 (776)
T KOG1633|consen 63 CKMTLKEFVKYYSSPQR---KRLYNVISLEFSDTRLSNLVESPEIVRKLDWVDNQWPDDLKM---EYPKVQKYCLMSVKD 136 (776)
T ss_pred ccccHHHHhhhhcCcch---hhhhheeccccCcchHHhcCCCchhhhhhhchhccCCchhcc---cccccccceeeeccc
Confidence 67999999999987641 223311 0011 112455555543 2332211 112222 2278889
Q ss_pred CCCCcccCcc--CceeEEEEeeEEEEeC
Q 021131 292 TVTPLHHDPH--HNILAQYLCNNLSFFS 317 (317)
Q Consensus 292 T~TpLH~Dp~--~Nll~QV~G~Kr~~l~ 317 (317)
.-|..|.|+- .-|+-.+.|.|.|.|+
T Consensus 137 ~Ytdfhidfggtsvwyhil~G~K~f~lI 164 (776)
T KOG1633|consen 137 SYTDFHIDFGGTSVWYHILAGEKTFYLI 164 (776)
T ss_pred cccccccCCCCcchhhhhhccccceeee
Confidence 9999999994 3456677999999874
No 13
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=25.62 E-value=1.3e+02 Score=24.99 Aligned_cols=68 Identities=13% Similarity=0.260 Sum_probs=44.7
Q ss_pred CceEEecchHHHHHhHHHHHHHHHHHHhhhccccCCCCCcHHHHHHHHHHHHHHhhhccCccHHHHHHHhHhHhhccCCc
Q 021131 24 GGYAYVGMAAQAAADIRAAEAARDLAWEQLHSGPWHSVLPVWRDAYSMACLHGAKYHYRNGEFKEALRVLDMGVLMGGPV 103 (317)
Q Consensus 24 ~g~~~~~~~~~~~~~~~~~~~~~~~a~ekL~~g~w~~V~~~wR~~Y~~~~l~~~~~~~~~~~~~~~i~~lD~~limgg~~ 103 (317)
+||.|--.+...-++......++|+-.++|+.-. ..|. .+|+++||..+-.|.+.
T Consensus 18 pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~-~hVK------------------------~K~Lrilk~l~~~G~~~ 72 (122)
T cd03572 18 PGYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSS-PHVK------------------------LKVLKIIKHLCEKGNSD 72 (122)
T ss_pred chHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCC-Ccch------------------------HHHHHHHHHHHhhCCHH
Confidence 5666655555555577788889999999997533 2322 25677888877777776
Q ss_pred ChhhHHHHHHHHH
Q 021131 104 LRKDLDSAIETLS 116 (317)
Q Consensus 104 ~~~~l~~~~~~~~ 116 (317)
++.++..-...+.
T Consensus 73 f~~~~~~~~~~Ik 85 (122)
T cd03572 73 FKRELQRNSAQIR 85 (122)
T ss_pred HHHHHHHhHHHHH
Confidence 7666665444333
Done!