BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021133
(317 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2
PE=2 SV=1
Length = 1040
Score = 302 bits (774), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 147/318 (46%), Positives = 218/318 (68%), Gaps = 2/318 (0%)
Query: 1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
M VVPV + L+S +S +RL +P DLRP+D RQS+L ++QE++ RFP G+P L+P+ DM I
Sbjct: 724 MQVVPVLVHLLSAISTVRLYIPKDLRPVDNRQSVLKSIQEVQRRFPDGVPLLDPIDDMGI 783
Query: 61 EDPEVVDLVNQIEELEHKLFAHPL-NKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
+D + ++ ++E EH++++HPL N E +RKA++ +I+ K +++ ++
Sbjct: 784 QDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCERKAQIALDIKSAKRELKKARTV 843
Query: 120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
DELK R RVL++LG + V+++KGR AC I + DELL+TE+MFNG FNDL Q
Sbjct: 844 LQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSSEQA 903
Query: 180 AALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRP 239
AL SCF+ + SSE L +LA PL+Q+QE A++IA++ E KLE++ + Y+ S+ +P
Sbjct: 904 TALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYL-SSFKP 962
Query: 240 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFA 299
LMDV+Y W+ GATFA + +MTD+FEGSIIR RRL+E L Q+ AA+A+G LE KFA
Sbjct: 963 HLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFA 1022
Query: 300 AASESLRRGIMFSNSLYL 317
++R I+F+ SLYL
Sbjct: 1023 EGITKIKRDIVFAASLYL 1040
>sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2
PE=1 SV=3
Length = 1042
Score = 301 bits (771), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 146/318 (45%), Positives = 218/318 (68%), Gaps = 2/318 (0%)
Query: 1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
M VVPV + L+S +S +RL +P DLRP+D RQS+L ++QE++ RFP G+P L+P+ DM I
Sbjct: 726 MQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGIPLLDPIDDMGI 785
Query: 61 EDPEVVDLVNQIEELEHKLFAHPL-NKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
+D + ++ ++E EH++++HPL N E ++KA++ +I+ K +++ ++
Sbjct: 786 QDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKARTV 845
Query: 120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
DELK R RVL++LG + V+++KGR AC I + DELL+TE+MFNG FNDL Q
Sbjct: 846 LQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQA 905
Query: 180 AALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRP 239
AL SCF+ + SSE L +LA PL+Q+QE A++IA++ E KLE++ + Y+ S+ +P
Sbjct: 906 TALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYL-SSFKP 964
Query: 240 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFA 299
LMDV+Y W+ GATFA + +MTD+FEGSIIR RRL+E L Q+ AA+A+G LE KFA
Sbjct: 965 HLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFA 1024
Query: 300 AASESLRRGIMFSNSLYL 317
++R I+F+ SLYL
Sbjct: 1025 EGITKIKRDIVFAASLYL 1042
>sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mtr4 PE=1 SV=1
Length = 1117
Score = 248 bits (632), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 132/317 (41%), Positives = 208/317 (65%), Gaps = 3/317 (0%)
Query: 3 VVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIED 62
VVP L + ++ IR+ +P DL+ + ++ A+ E++ RFP+G+ L+PV++M I++
Sbjct: 802 VVPFLLSSLDGIAHIRVFLPNDLKSQGQKLTVGKALSEVKRRFPEGITLLDPVENMNIKE 861
Query: 63 PEVVDLVNQIEELEHKLFAHPL-NKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKF 121
P + L+ ++ LE +L ++PL N S+ E + + RK + E++ LK K+ ++
Sbjct: 862 PTFIKLMKKVNILESRLLSNPLHNFSELEEKYAEYLRKLALLEEVKDLKKKLSKARSIMQ 921
Query: 122 RDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAA 181
DEL +R RVL++LG +D V+++KGR AC I +GD LL+TEL+FNG FNDL Q AA
Sbjct: 922 LDELNSRKRVLRRLGFTTSDDVIEVKGRVACEISSGDGLLLTELIFNGMFNDLTPEQCAA 981
Query: 182 LASCFIPVDKSS-EQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPF 240
L SC + +KS E ++ ELA PL+ LQE AR+IA++ E K E+N +EYV S +P
Sbjct: 982 LLSCLVFQEKSEVENQRMKEELAGPLKILQEMARRIAKVSKESKQELNEEEYVNS-FKPS 1040
Query: 241 LMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAA 300
LM+V+Y W+ GA+FA++ +MTD++EGS+IR RRL+E + Q+ AA+ +G +L++K
Sbjct: 1041 LMEVVYAWAHGASFAQICKMTDVYEGSLIRMFRRLEELIRQMVDAAKVIGNTSLQQKMED 1100
Query: 301 ASESLRRGIMFSNSLYL 317
+ R I+FS SLYL
Sbjct: 1101 TIACIHRDIVFSASLYL 1117
>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3 SV=1
Length = 1026
Score = 233 bits (594), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/315 (40%), Positives = 196/315 (62%), Gaps = 3/315 (0%)
Query: 4 VPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDP 63
VP+ + I+ +S +RL VP D+ D + + + RF +P L+P++DM+I+
Sbjct: 714 VPMTIDRITAISAVRLKVPADIDKPDGQMRLDGMMAAATKRFGNQIPLLDPIQDMEIKTV 773
Query: 64 EVVDLVNQIEELEHKLFAHPLNKSQDENQIRC-FQRKAEVNHEIQQLKSKMRDSQIQKFR 122
E+ +L+ + + LE +L H + K + ++ F++K + E+ LK++ + Q
Sbjct: 774 EMKELIAREKSLEGRLETHSMTKRDNMKDLKKQFEQKQDAVKELNALKAERKSVQSTLHL 833
Query: 123 DELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAAL 182
+EL NR RVL++LG++ D + LKG AC + DEL++TE++ G FN LD Q AAL
Sbjct: 834 EELNNRKRVLRRLGYLGNDDALVLKGSVACELSASDELILTEMLLKGIFNTLDVAQTAAL 893
Query: 183 ASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLM 242
SCF+ DK + L EL L +L E AR +A++ NECK+EV D+YV S+ P LM
Sbjct: 894 LSCFVFQDKCAAP-KLATELQTCLSELHEQARNVAKVSNECKMEVMEDKYV-SSFNPGLM 951
Query: 243 DVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAAS 302
DV+Y W GATF+E+++ TD+FEGSIIR+ RRL+E L ++ AA+A+ LE+KF A
Sbjct: 952 DVVYQWVNGATFSEIVKTTDVFEGSIIRTLRRLEEVLREMINAAKALANKELEQKFEDAR 1011
Query: 303 ESLRRGIMFSNSLYL 317
++L+R I+F+ SLYL
Sbjct: 1012 KNLKRDIVFAASLYL 1026
>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1
Length = 1073
Score = 231 bits (588), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 129/316 (40%), Positives = 209/316 (66%), Gaps = 2/316 (0%)
Query: 3 VVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIED 62
V+P+ L I ++ +RL +P D+R ++++ +++E+ RFP G+P L+PVK+MKIED
Sbjct: 759 VIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIED 818
Query: 63 PEVVDLVNQIEELEHKLFAHPLNKSQDENQIRC-FQRKAEVNHEIQQLKSKMRDSQIQKF 121
+ + L+ +I+ L KL ++PL S ++ + RK +++ +++QLK K+ +SQ
Sbjct: 819 EDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQ 878
Query: 122 RDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAA 181
D+L+ R RVL++LG + +++LKGR AC I +GDELL+TEL+FNG FN+L Q AA
Sbjct: 879 LDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAA 938
Query: 182 LASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFL 241
L SCF ++ E L+ ELA+PL+ ++E A KIA+I + K+EV +YVES R L
Sbjct: 939 LLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVES-FRHEL 997
Query: 242 MDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAA 301
M+V+Y W +GATF ++ +MTD++EGS+IR +RL+E + +L A +G +L++K A
Sbjct: 998 MEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAV 1057
Query: 302 SESLRRGIMFSNSLYL 317
+ + R I+ + SLYL
Sbjct: 1058 LKLIHRDIVSAGSLYL 1073
>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1
Length = 1030
Score = 184 bits (466), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 113/318 (35%), Positives = 185/318 (58%), Gaps = 6/318 (1%)
Query: 3 VVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIED 62
+V V L + +S IR+ +P +L +++ V E+ F + +P L+P++ M IE
Sbjct: 716 IVSVLLTAVCNISSIRIYMPRELNSNESKLRAYRRVNEVIEEFKE-IPYLDPLEHMHIES 774
Query: 63 PEVVDLVNQIEELEHKLFAHPLNK-SQDENQIRCFQRKAEVNHEIQQLKSKMRDSQ-IQK 120
+ + ++E LE KLF P K S+ + F++K + +I+ + +K+ +++ I +
Sbjct: 775 STLSLSLRKLEILEPKLFDSPYYKDSKHRAEYHEFRKKLNLRAQIKDISTKITNTEAIIQ 834
Query: 121 FRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 180
R ELK R RVL++LG + V+ +KGR AC I +GDELL+ EL+F G FN + ++A
Sbjct: 835 LR-ELKIRQRVLRRLGFCTLENVIDIKGRVACEITSGDELLLVELIFQGFFNQMPPEEIA 893
Query: 181 ALASCFIPVDKSS-EQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRP 239
A SCF+ DKS +NL+ K + E+A++IA + E KL+ N +Y+ +P
Sbjct: 894 AALSCFVYEDKSEVSTLNLKEPFKKMYLTIIEAAKRIATVSLESKLQFNESDYLHQ-FKP 952
Query: 240 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFA 299
+M+ + W GA+F E+ ++ ++EGSI+R+ RRLDE L QL AA +G L++K
Sbjct: 953 DIMEPVSLWINGASFQEICIVSKLYEGSIVRTFRRLDELLKQLEHAAIVLGNNELKEKSV 1012
Query: 300 AASESLRRGIMFSNSLYL 317
+ L R I+FS SLYL
Sbjct: 1013 LTEQKLHRDIIFSASLYL 1030
>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3
Length = 1246
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 158/291 (54%), Gaps = 13/291 (4%)
Query: 33 SILLAVQEL---ESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKL-FAHPLNKSQ 88
++ AVQEL P G P L+PV D++++D VV+ + +LE + A ++ +
Sbjct: 960 AVTTAVQELLRLAQAHPAGPPTLDPVNDLQLKDMSVVEGGLRARKLEELIQGAQCVHSPR 1019
Query: 89 DENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKG 148
Q + + ++ E+++L+ + D + E R VL+ LG+++ G V+L G
Sbjct: 1020 FPAQYLKLRERMQIQKEMERLRFLLSDQSLLL-LPEYHQRVEVLRTLGYVDEAGTVKLAG 1078
Query: 149 RAACLIDTGDELLVTELMFNGTFNDLDHHQVAALAS---CFIPVDKSSEQINLRMELAKP 205
R AC + + ELL+TELMF+ + L ++AAL S C P D + N L +
Sbjct: 1079 RVACAMSS-HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPN---TLKQG 1134
Query: 206 LQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFE 265
+++++ A++I E+Q C L V+E+V + L++V+Y W++G F+E+ ++ E
Sbjct: 1135 IERVRAVAKRIGEVQVACGLNQTVEEFV-GELNFGLVEVVYEWARGMPFSELAGLSGTPE 1193
Query: 266 GSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLY 316
G ++R +RL E LR AA+ VGE L K A+ LRR I+F+ SLY
Sbjct: 1194 GLVVRCIQRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLY 1244
>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1
Length = 1213
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 138/261 (52%), Gaps = 3/261 (1%)
Query: 59 KIEDPEVVDLVNQIEELEHKLFAHPLNKSQDE-NQIRCFQRKAEVNHEIQQLKSKMRDSQ 117
K+ D E + + L++KL +P+ + + ++ E+ I L S + D
Sbjct: 954 KVRDFEFCEAFEKRNFLQNKLSGNPIISTPNFLTHFALAYQEYELESNIDNLSSYISDQN 1013
Query: 118 IQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHH 177
++ D + R +VL++LG+I+A+ V LKGR AC I++ EL++TEL+ + D
Sbjct: 1014 LELLPD-YEQRIKVLQELGYIDAERTVLLKGRVACEINSTSELVLTELILENSLADFSCE 1072
Query: 178 QVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECK-LEVNVDEYVEST 236
+ AL S F+ +K+ + + L K + + A K+ +IQ + L N ES
Sbjct: 1073 ETIALLSAFVFDEKTEVEPTISPHLQKGKEMILSVAEKVNQIQEHYQVLYFNEGNDFESQ 1132
Query: 237 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEK 296
R LM+V Y W++G +F + +TD+ EGSI+R+ RLDE L + R AA+ VG+ ++
Sbjct: 1133 PRFGLMEVCYEWARGMSFNRITDLTDVLEGSIVRTIIRLDEVLRECRGAARVVGDSSMYT 1192
Query: 297 KFAAASESLRRGIMFSNSLYL 317
K +RR I+F SLY+
Sbjct: 1193 KMEECQNLIRRNIVFCPSLYM 1213
>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SKI2 PE=1 SV=2
Length = 1287
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 122/221 (55%), Gaps = 8/221 (3%)
Query: 102 VNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELL 161
+ +I++L M D + D K R VLK I+ + V LKGR AC I++G EL+
Sbjct: 1070 IKKKIEELYHLMSDQNLSLLPDYEK-RLAVLKDTEFIDQNHNVLLKGRVACEINSGYELV 1128
Query: 162 VTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQ----INLRMELAKPLQQLQESARKIA 217
+TEL+ + + ++ AL S F+ K+ E+ + R LAK Q+++E +K+
Sbjct: 1129 LTELILDNFLGSFEPEEIVALLSVFVYEGKTREEEPPIVTPR--LAKGKQRIEEIYKKML 1186
Query: 218 EIQNECKLEVNVDEYVESTVRPF-LMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLD 276
+ N ++ + DE + F +M+V+Y W++G +F E+++M+ EG+++R LD
Sbjct: 1187 CVFNTHQIPLTQDEAEFLDRKRFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVITWLD 1246
Query: 277 EFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL 317
E +++ A+ +G L K + A E ++R I+F+ SLYL
Sbjct: 1247 EICREVKTASIIIGNSTLHMKMSRAQELIKRDIVFAASLYL 1287
>sp|Q9ZBD8|HELY_MYCLE Probable helicase HelY OS=Mycobacterium leprae (strain TN) GN=helY
PE=3 SV=1
Length = 920
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 33/182 (18%)
Query: 148 GRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFI-----------PVDKSSEQI 196
GR I + +LLV E + G + L ++AA+ S + PVD +
Sbjct: 748 GRLLARIYSESDLLVAECLRTGAWAGLRPAELAAVVSAVLYETRGDDGPGGPVDAEAPTP 807
Query: 197 NLRMELAKPLQQLQESARKIAEIQ-NECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFA 255
LR Q LQ ++R A ++ +E + + + + + VIYCW++ A
Sbjct: 808 RLR-------QALQHTSRLSATLRADEQRHRIALSREPDDG----FVGVIYCWARTGDLA 856
Query: 256 EVIQM-------TDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRG 308
V+ + G +R R++ + L+QLR AA E +L A +RRG
Sbjct: 857 AVLAAADASGNGAPLSAGDFVRWCRQVLDLLDQLRNAAP---EPDLRATAKRAINDVRRG 913
Query: 309 IM 310
++
Sbjct: 914 VV 915
>sp|Q9ASQ5|CRCK3_ARATH Calmodulin-binding receptor-like cytoplasmic kinase 3
OS=Arabidopsis thaliana GN=CRCK3 PE=2 SV=1
Length = 510
Score = 35.0 bits (79), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 112 KMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDE-LLVTELMFNGT 170
+ + + R E K+ +L K+GH N +V+L G +D GDE L++TE + NGT
Sbjct: 254 RAKKEHFENLRTEFKSEVDLLSKIGHRN---LVKLLG----YVDKGDERLIITEYVRNGT 306
Query: 171 FND 173
D
Sbjct: 307 LRD 309
>sp|Q39086|SD17_ARATH Receptor-like serine/threonine-protein kinase SD1-7 OS=Arabidopsis
thaliana GN=SD17 PE=1 SV=1
Length = 843
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Query: 123 DELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAAL 182
DE N R++ KL HIN +V+L G C +D G+++L+ E + N + LD H
Sbjct: 558 DEFMNEVRLIAKLQHIN---LVRLLG---CCVDKGEKMLIYEYLENLS---LDSHLFDQT 608
Query: 183 ASCFIPVDKSSEQINLRMELAKPLQQLQESAR 214
S + K + IN +A+ L L + +R
Sbjct: 609 RSSNLNWQKRFDIIN---GIARGLLYLHQDSR 637
>sp|Q9S972|SD16_ARATH Receptor-like serine/threonine-protein kinase SD1-6 OS=Arabidopsis
thaliana GN=SD16 PE=1 SV=2
Length = 847
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Query: 123 DELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAAL 182
DE N R++ KL HIN +V+L G C +D G+++L+ E + N + LD H
Sbjct: 562 DEFMNEVRLIAKLQHIN---LVRLLG---CCVDKGEKMLIYEYLENLS---LDSHLFDQT 612
Query: 183 ASCFIPVDKSSEQINLRMELAKPLQQLQESAR 214
S + K + IN +A+ L L + +R
Sbjct: 613 RSSNLNWQKRFDIIN---GIARGLLYLHQDSR 641
>sp|O81905|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis
thaliana GN=SD18 PE=1 SV=1
Length = 850
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 9/55 (16%)
Query: 123 DELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHH 177
DE KN +++ +L HIN +V+L AC +D G+++L+ E + N + LD H
Sbjct: 565 DEFKNEVKLIARLQHIN---LVRL---LACCVDAGEKMLIYEYLENLS---LDSH 610
>sp|Q8RY67|WAKLO_ARATH Wall-associated receptor kinase-like 14 OS=Arabidopsis thaliana
GN=WAKL14 PE=2 SV=2
Length = 708
Score = 32.3 bits (72), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 123 DELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFND 173
D++ N ++L + H N +V+L G C I+ GD +LV E M NGT ++
Sbjct: 387 DQVMNEIKLLSSVSHPN---LVRLLG---CCIEQGDPVLVYEYMPNGTLSE 431
>sp|Q39191|WAK1_ARATH Wall-associated receptor kinase 1 OS=Arabidopsis thaliana GN=WAK1
PE=1 SV=2
Length = 735
Score = 31.6 bits (70), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 23/108 (21%)
Query: 110 KSKMRDS-QIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFN 168
K+++ DS Q+++F +E+ VL ++ H N VV+L G C ++T LLV E + N
Sbjct: 438 KARLGDSSQVEQFINEV----LVLSQINHRN---VVKLLG---CCLETEVPLLVYEFITN 487
Query: 169 GTFNDLDHHQVAALASCFIPVDKS---SEQINLRMELAKPLQQLQESA 213
GT D H + +D S ++ + +E+A L L SA
Sbjct: 488 GTLFDHLHGSM---------IDSSLTWEHRLKIAIEVAGTLAYLHSSA 526
>sp|Q8KM02|SLYA_PHOLL Transcriptional regulator SlyA OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=slyA PE=3 SV=1
Length = 143
Score = 31.6 bits (70), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 9/127 (7%)
Query: 25 LRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFA-HP 83
L+PL+ Q+ + + + SR PQ ++ K + IE P +V ++Q+E E KL H
Sbjct: 24 LKPLELTQTHWVTLYNI-SRLPQEQSQIQLAKAIGIEQPSLVRTLDQLE--EKKLITRHT 80
Query: 84 LNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKF-RDELKNRSRVLKKLGHINADG 142
+ +I+ + A V E+ + R+ + R+EL S +++KL
Sbjct: 81 CANDRRAKRIKLTEDSASVIRELDGVIESTRNEILGGISREELAFLSTLVQKLEQ----N 136
Query: 143 VVQLKGR 149
++QL+ R
Sbjct: 137 IIQLQSR 143
>sp|Q8P017|Y1615_STRP8 Uncharacterized RNA methyltransferase spyM18_1615 OS=Streptococcus
pyogenes serotype M18 (strain MGAS8232) GN=spyM18_1615
PE=3 SV=1
Length = 451
Score = 31.2 bits (69), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 45 FPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQ-RKAEVN 103
F QG +L P+ + ++D D++N+I +L K + P+ + IR RKA+ +
Sbjct: 149 FSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDK-YKLPIYNERKIAGIRTIMVRKAQAS 207
Query: 104 HEIQQLKSKMRDSQIQKFRDEL 125
++Q + ++ ++ +F EL
Sbjct: 208 DQVQIIVVSSKEVRLARFIGEL 229
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,745,200
Number of Sequences: 539616
Number of extensions: 4146034
Number of successful extensions: 16985
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 16883
Number of HSP's gapped (non-prelim): 193
length of query: 317
length of database: 191,569,459
effective HSP length: 117
effective length of query: 200
effective length of database: 128,434,387
effective search space: 25686877400
effective search space used: 25686877400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)