Query 021133
Match_columns 317
No_of_seqs 147 out of 662
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 13:13:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xgj_A ATP-dependent RNA helic 100.0 2.8E-79 9.5E-84 655.5 31.5 316 1-317 694-1010(1010)
2 3l9o_A ATP-dependent RNA helic 100.0 2.6E-80 9E-85 668.5 20.4 316 1-317 792-1108(1108)
3 4a4z_A Antiviral helicase SKI2 100.0 1E-76 3.5E-81 635.3 27.2 310 1-317 680-997 (997)
4 2va8_A SSO2462, SKI2-type heli 96.5 0.03 1E-06 57.2 14.0 173 123-309 471-652 (715)
5 2p6r_A Afuhel308 helicase; pro 95.1 0.23 7.9E-06 50.6 13.3 155 123-292 453-614 (702)
6 2zj8_A DNA helicase, putative 94.4 0.5 1.7E-05 48.3 13.8 174 123-309 454-641 (720)
7 3i4u_A ATP-dependent RNA helic 90.5 3.7 0.00013 37.1 12.5 136 123-287 18-153 (270)
8 4dyq_A Gene 1 protein; GP1, oc 88.7 1 3.5E-05 36.6 6.7 65 237-302 13-79 (140)
9 1p4x_A Staphylococcal accessor 81.5 15 0.0005 32.6 11.3 124 123-278 65-201 (250)
10 2o8x_A Probable RNA polymerase 78.3 3.3 0.00011 28.4 4.7 49 237-285 16-65 (70)
11 3idw_A Actin cytoskeleton-regu 74.4 2.1 7.1E-05 31.0 2.7 24 256-279 42-65 (72)
12 1tc3_C Protein (TC3 transposas 73.9 3.2 0.00011 25.8 3.4 34 242-275 12-45 (51)
13 2xau_A PRE-mRNA-splicing facto 73.6 3.6 0.00012 42.7 5.4 61 123-184 489-550 (773)
14 4aik_A Transcriptional regulat 68.1 10 0.00035 30.4 6.1 61 122-186 60-130 (151)
15 3hug_A RNA polymerase sigma fa 67.4 11 0.00039 27.5 5.7 48 237-284 38-86 (92)
16 1xsv_A Hypothetical UPF0122 pr 66.8 32 0.0011 26.3 8.5 67 237-306 26-93 (113)
17 3jw4_A Transcriptional regulat 60.3 18 0.0006 28.3 6.0 61 122-186 71-141 (148)
18 1je8_A Nitrate/nitrite respons 58.2 12 0.00041 26.9 4.2 44 237-280 22-65 (82)
19 1fse_A GERE; helix-turn-helix 58.1 14 0.00049 25.2 4.5 44 237-280 12-55 (74)
20 3mzy_A RNA polymerase sigma-H 57.8 17 0.00059 28.4 5.6 49 237-285 110-158 (164)
21 1jko_C HIN recombinase, DNA-in 56.3 6.2 0.00021 24.8 2.1 34 242-275 12-45 (52)
22 3oop_A LIN2960 protein; protei 55.6 13 0.00046 28.8 4.5 61 122-186 65-135 (143)
23 2elh_A CG11849-PA, LD40883P; s 55.5 17 0.00058 26.4 4.7 46 237-282 23-69 (87)
24 3ech_A MEXR, multidrug resista 54.9 52 0.0018 25.2 7.9 38 239-277 40-77 (142)
25 3bdd_A Regulatory protein MARR 53.9 43 0.0015 25.4 7.3 61 207-277 10-71 (142)
26 4hbl_A Transcriptional regulat 53.6 27 0.00092 27.3 6.0 58 122-186 69-136 (149)
27 1x3u_A Transcriptional regulat 52.7 14 0.00049 25.7 3.8 44 237-280 17-60 (79)
28 2jpc_A SSRB; DNA binding prote 52.0 17 0.00059 23.9 4.0 37 243-279 5-41 (61)
29 3g3z_A NMB1585, transcriptiona 51.1 46 0.0016 25.6 7.0 52 216-277 20-71 (145)
30 3ech_A MEXR, multidrug resista 50.8 12 0.00043 29.0 3.5 60 123-186 66-135 (142)
31 3e6m_A MARR family transcripti 50.4 17 0.00058 28.9 4.4 61 122-186 81-151 (161)
32 1ku3_A Sigma factor SIGA; heli 50.4 26 0.00089 24.2 4.9 44 237-280 11-59 (73)
33 3fm5_A Transcriptional regulat 50.4 16 0.00053 28.7 4.1 61 122-186 68-138 (150)
34 3deu_A Transcriptional regulat 49.3 17 0.00058 29.4 4.2 61 122-186 82-152 (166)
35 1s7o_A Hypothetical UPF0122 pr 49.3 86 0.0029 23.9 8.3 48 237-284 23-71 (113)
36 4b8x_A SCO5413, possible MARR- 49.0 26 0.00088 27.7 5.2 55 214-277 22-77 (147)
37 4b8x_A SCO5413, possible MARR- 48.7 38 0.0013 26.7 6.2 60 122-186 65-134 (147)
38 3eco_A MEPR; mutlidrug efflux 47.1 24 0.00081 27.0 4.7 39 239-277 34-73 (139)
39 3kp7_A Transcriptional regulat 46.9 25 0.00087 27.4 4.9 60 123-186 66-137 (151)
40 3nrv_A Putative transcriptiona 46.7 23 0.0008 27.4 4.6 61 122-186 68-138 (148)
41 3nqo_A MARR-family transcripti 46.5 40 0.0014 27.8 6.2 69 202-277 14-83 (189)
42 3k0l_A Repressor protein; heli 46.5 24 0.00083 28.0 4.7 60 123-186 75-144 (162)
43 3c57_A Two component transcrip 46.3 28 0.00095 25.6 4.7 44 237-280 28-71 (95)
44 3jw4_A Transcriptional regulat 46.1 28 0.00096 27.1 5.0 53 216-277 30-83 (148)
45 3nqo_A MARR-family transcripti 45.8 33 0.0011 28.2 5.6 61 122-186 71-141 (189)
46 3eco_A MEPR; mutlidrug efflux 45.7 16 0.00053 28.1 3.3 61 122-186 61-131 (139)
47 1lj9_A Transcriptional regulat 44.5 24 0.00081 27.2 4.3 61 122-186 57-127 (144)
48 2rnj_A Response regulator prot 44.5 23 0.00078 25.7 3.9 44 237-280 30-73 (91)
49 3u2r_A Regulatory protein MARR 44.3 58 0.002 25.8 6.8 39 239-277 49-88 (168)
50 2p7v_B Sigma-70, RNA polymeras 43.2 26 0.0009 23.8 3.9 45 237-281 6-55 (68)
51 3bro_A Transcriptional regulat 43.2 46 0.0016 25.3 5.8 27 251-277 50-76 (141)
52 1sfx_A Conserved hypothetical 43.1 25 0.00085 25.5 4.0 53 215-277 8-60 (109)
53 2nnn_A Probable transcriptiona 42.9 20 0.00069 27.3 3.6 61 122-186 66-136 (140)
54 3boq_A Transcriptional regulat 42.9 21 0.00072 28.1 3.8 60 123-186 77-146 (160)
55 1ku9_A Hypothetical protein MJ 42.8 34 0.0011 26.2 5.0 53 216-277 15-67 (152)
56 2gxg_A 146AA long hypothetical 42.6 51 0.0017 25.2 6.0 37 239-277 40-76 (146)
57 2fbh_A Transcriptional regulat 42.2 25 0.00087 27.0 4.1 61 122-186 66-136 (146)
58 3s2w_A Transcriptional regulat 41.6 20 0.00067 28.4 3.4 61 122-186 78-148 (159)
59 3fm5_A Transcriptional regulat 41.6 32 0.0011 26.7 4.7 39 239-277 42-80 (150)
60 3oop_A LIN2960 protein; protei 41.4 25 0.00086 27.1 4.0 38 239-277 40-77 (143)
61 1zhc_A Hypothetical protein HP 41.4 59 0.002 23.4 5.6 60 56-115 10-69 (76)
62 3deu_A Transcriptional regulat 40.8 22 0.00074 28.7 3.6 39 239-277 56-94 (166)
63 3cjn_A Transcriptional regulat 40.6 29 0.00098 27.4 4.3 61 122-186 80-150 (162)
64 2gxg_A 146AA long hypothetical 39.6 31 0.001 26.5 4.2 61 122-186 64-134 (146)
65 2a61_A Transcriptional regulat 39.6 39 0.0013 25.8 4.8 38 239-277 36-73 (145)
66 2frh_A SARA, staphylococcal ac 39.4 44 0.0015 25.6 5.1 54 215-277 25-79 (127)
67 3bja_A Transcriptional regulat 39.4 18 0.0006 27.6 2.7 60 123-186 62-131 (139)
68 2qww_A Transcriptional regulat 38.7 21 0.00073 27.9 3.2 63 122-186 69-143 (154)
69 3bro_A Transcriptional regulat 38.3 30 0.001 26.4 4.0 61 122-186 64-134 (141)
70 1pdn_C Protein (PRD paired); p 38.3 38 0.0013 25.2 4.5 35 243-277 25-59 (128)
71 4hbl_A Transcriptional regulat 37.3 46 0.0016 25.9 5.0 38 239-277 44-81 (149)
72 2hr3_A Probable transcriptiona 37.1 1.1E+02 0.0037 23.2 7.2 38 240-277 39-76 (147)
73 3im1_A Protein SNU246, PRE-mRN 37.0 76 0.0026 28.8 7.1 149 137-310 2-153 (328)
74 3f3x_A Transcriptional regulat 36.8 52 0.0018 25.2 5.2 37 240-278 41-77 (144)
75 1jgs_A Multiple antibiotic res 36.6 54 0.0018 24.8 5.2 38 240-278 38-75 (138)
76 1p4w_A RCSB; solution structur 36.5 36 0.0012 25.5 3.9 43 237-279 35-77 (99)
77 1s3j_A YUSO protein; structura 36.1 28 0.00097 27.1 3.5 61 122-186 65-135 (155)
78 2eth_A Transcriptional regulat 36.1 29 0.00099 27.2 3.6 61 122-186 72-142 (154)
79 3bdd_A Regulatory protein MARR 35.9 32 0.0011 26.2 3.8 61 122-186 59-130 (142)
80 2rdp_A Putative transcriptiona 35.8 1.4E+02 0.0047 22.7 7.7 37 240-277 46-82 (150)
81 2fbh_A Transcriptional regulat 35.8 66 0.0023 24.4 5.6 38 240-277 41-78 (146)
82 2nyx_A Probable transcriptiona 35.5 1.2E+02 0.0041 24.0 7.4 38 239-277 48-85 (168)
83 3bja_A Transcriptional regulat 35.3 79 0.0027 23.7 6.0 37 240-277 37-73 (139)
84 2fa5_A Transcriptional regulat 35.2 40 0.0014 26.5 4.3 61 122-186 77-147 (162)
85 2k4b_A Transcriptional regulat 35.1 45 0.0015 25.1 4.3 40 237-277 36-79 (99)
86 1lj9_A Transcriptional regulat 35.0 55 0.0019 24.9 5.1 37 240-277 33-69 (144)
87 2jn6_A Protein CGL2762, transp 34.7 34 0.0012 24.9 3.5 34 243-276 13-48 (97)
88 3bpv_A Transcriptional regulat 34.7 39 0.0013 25.6 4.1 61 122-186 57-127 (138)
89 3m8j_A FOCB protein; all-alpha 34.4 71 0.0024 24.9 5.3 51 240-290 48-99 (111)
90 3kp7_A Transcriptional regulat 34.3 1.5E+02 0.0053 22.6 7.7 50 217-277 28-77 (151)
91 2whn_A PILC, pilus assembly pr 34.3 71 0.0024 23.8 5.5 35 239-273 50-84 (116)
92 2hr3_A Probable transcriptiona 34.3 19 0.00065 27.9 2.2 61 122-186 64-135 (147)
93 1s3j_A YUSO protein; structura 33.7 85 0.0029 24.2 6.1 39 239-278 40-78 (155)
94 2fa5_A Transcriptional regulat 33.5 97 0.0033 24.1 6.4 38 240-278 53-90 (162)
95 1k78_A Paired box protein PAX5 33.2 48 0.0017 25.9 4.5 36 242-277 39-74 (149)
96 2qww_A Transcriptional regulat 33.1 58 0.002 25.2 4.9 37 240-277 45-81 (154)
97 1deb_A APC protein, adenomatou 33.1 1.1E+02 0.0037 20.4 5.9 40 97-136 10-51 (54)
98 3shg_B VBHA; ampylation, adeny 33.0 23 0.0008 24.5 2.1 23 237-259 28-51 (61)
99 3s2w_A Transcriptional regulat 32.9 75 0.0026 24.8 5.7 38 239-277 53-90 (159)
100 2x48_A CAG38821; archeal virus 32.7 31 0.0011 22.2 2.7 32 243-274 23-54 (55)
101 2rdp_A Putative transcriptiona 32.4 33 0.0011 26.5 3.3 61 122-186 70-140 (150)
102 1u78_A TC3 transposase, transp 32.3 36 0.0012 26.1 3.5 34 242-275 13-46 (141)
103 2bv6_A MGRA, HTH-type transcri 31.9 81 0.0028 23.9 5.6 29 250-278 50-78 (142)
104 1or7_A Sigma-24, RNA polymeras 31.7 79 0.0027 25.4 5.7 46 237-282 141-187 (194)
105 3bpv_A Transcriptional regulat 30.8 65 0.0022 24.3 4.8 37 240-277 33-69 (138)
106 3bj6_A Transcriptional regulat 30.5 40 0.0014 26.1 3.5 61 122-186 68-138 (152)
107 3cdh_A Transcriptional regulat 30.5 62 0.0021 25.1 4.7 30 248-277 53-83 (155)
108 3k0l_A Repressor protein; heli 30.4 1.1E+02 0.0036 24.0 6.2 38 239-277 49-86 (162)
109 1tty_A Sigma-A, RNA polymerase 29.8 65 0.0022 23.0 4.3 45 237-281 19-68 (87)
110 4aik_A Transcriptional regulat 29.8 92 0.0031 24.5 5.7 38 240-277 35-72 (151)
111 3hsr_A HTH-type transcriptiona 29.7 27 0.00093 26.9 2.4 29 249-277 48-76 (140)
112 2fbk_A Transcriptional regulat 29.1 1.1E+02 0.0037 24.6 6.1 39 239-277 72-112 (181)
113 2fbk_A Transcriptional regulat 29.0 25 0.00085 28.6 2.1 59 123-185 101-169 (181)
114 3bj6_A Transcriptional regulat 28.9 83 0.0028 24.1 5.2 37 240-277 44-80 (152)
115 2nyx_A Probable transcriptiona 28.8 34 0.0011 27.4 2.8 61 122-186 73-143 (168)
116 3e6m_A MARR family transcripti 28.6 70 0.0024 25.1 4.7 51 217-277 43-93 (161)
117 1rp3_A RNA polymerase sigma fa 28.1 1E+02 0.0035 25.5 5.9 46 237-282 188-234 (239)
118 3boq_A Transcriptional regulat 27.9 1.4E+02 0.0048 23.0 6.5 37 240-277 51-88 (160)
119 1z7u_A Hypothetical protein EF 27.6 76 0.0026 23.7 4.6 39 237-277 23-62 (112)
120 1z91_A Organic hydroperoxide r 27.6 73 0.0025 24.3 4.6 38 240-278 44-81 (147)
121 2pg4_A Uncharacterized protein 27.3 56 0.0019 23.5 3.6 28 251-278 30-58 (95)
122 2glo_A Brinker CG9653-PA; prot 27.3 45 0.0015 22.0 2.8 35 248-282 18-56 (59)
123 2q0z_X Protein Pro2281; SEC63, 26.8 3.3E+02 0.011 24.6 9.6 144 143-311 14-158 (339)
124 2pex_A Transcriptional regulat 26.7 76 0.0026 24.5 4.6 38 240-278 51-88 (153)
125 2q1z_A RPOE, ECF SIGE; ECF sig 26.2 53 0.0018 26.2 3.7 46 237-282 136-182 (184)
126 2fxa_A Protease production reg 26.0 1.1E+02 0.0039 25.5 5.8 37 240-277 52-88 (207)
127 3tgn_A ADC operon repressor AD 25.3 46 0.0016 25.5 3.0 65 122-186 65-138 (146)
128 1r7j_A Conserved hypothetical 25.2 58 0.002 24.1 3.4 41 113-154 26-69 (95)
129 3cjn_A Transcriptional regulat 25.1 65 0.0022 25.2 3.9 37 240-277 56-92 (162)
130 2hzt_A Putative HTH-type trans 24.8 87 0.003 23.2 4.4 30 248-277 24-54 (107)
131 3ov9_A Nucleoprotein; orthogon 24.6 53 0.0018 29.1 3.4 64 78-155 177-241 (245)
132 2knz_A Ubiquilin-4; cytoplasm, 24.5 1.3E+02 0.0044 19.7 4.7 43 123-170 9-51 (53)
133 3sjb_C Golgi to ER traffic pro 24.2 2.3E+02 0.0078 21.2 8.5 66 62-133 22-87 (93)
134 2qvo_A Uncharacterized protein 23.8 52 0.0018 23.8 2.8 26 252-277 31-56 (95)
135 2ga1_A Protein of unknown func 23.4 1.3E+02 0.0046 22.9 5.2 48 237-284 50-98 (106)
136 1g6u_A Domain swapped dimer; d 23.3 41 0.0014 21.3 1.8 15 172-186 15-29 (48)
137 1l8d_A DNA double-strand break 22.9 2.4E+02 0.0081 21.0 7.9 7 81-87 47-53 (112)
138 2nnn_A Probable transcriptiona 22.8 2.1E+02 0.007 21.3 6.4 37 240-277 42-78 (140)
139 1hsj_A Fusion protein consisti 22.6 62 0.0021 30.5 3.8 37 241-277 407-446 (487)
140 3nrv_A Putative transcriptiona 22.3 85 0.0029 24.0 4.0 29 250-278 53-81 (148)
141 1p4x_A Staphylococcal accessor 22.2 1.1E+02 0.0038 26.7 5.1 37 241-277 37-76 (250)
142 1ais_B TFB TFIIB, protein (tra 22.1 1.9E+02 0.0065 23.8 6.5 66 208-279 124-193 (200)
143 2vn2_A DNAD, chromosome replic 21.5 1.2E+02 0.004 23.5 4.7 26 252-277 52-77 (128)
144 3vlc_E Golgi to ER traffic pro 21.2 1.4E+02 0.0046 22.5 4.6 53 62-115 29-81 (94)
145 3iwf_A Transcription regulator 21.1 77 0.0026 24.0 3.4 29 248-276 32-60 (107)
146 3ulq_B Transcriptional regulat 21.0 1.1E+02 0.0039 22.1 4.2 43 237-279 30-72 (90)
147 4fx0_A Probable transcriptiona 20.9 1.6E+02 0.0055 22.9 5.5 26 252-277 53-78 (148)
148 2wt7_B Transcription factor MA 20.8 1.7E+02 0.0057 21.8 5.0 56 60-115 18-73 (90)
149 2fbi_A Probable transcriptiona 20.7 1.1E+02 0.0038 22.9 4.4 28 250-277 49-76 (142)
150 2fu4_A Ferric uptake regulatio 20.5 1.2E+02 0.0042 21.0 4.2 51 220-277 8-64 (83)
151 2k27_A Paired box protein PAX- 20.5 50 0.0017 26.3 2.3 25 249-273 39-63 (159)
152 3p1f_A CREB-binding protein; s 20.5 1.2E+02 0.0041 23.1 4.5 70 26-95 8-81 (119)
153 2bwb_A Ubiquitin-like protein 20.3 1.6E+02 0.0056 18.7 4.4 42 123-169 5-46 (46)
154 1tbx_A ORF F-93, hypothetical 20.2 72 0.0025 23.0 3.0 28 250-277 21-52 (99)
155 3may_A RV0203, possible export 20.1 1.4E+02 0.0046 22.8 4.5 27 205-231 62-88 (101)
No 1
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-79 Score=655.55 Aligned_cols=316 Identities=41% Similarity=0.726 Sum_probs=307.7
Q ss_pred CEEEEeecCccccccceeEEcCCCCCChhHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCChHHHHHHHHHHHHHHHHH
Q 021133 1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF 80 (317)
Q Consensus 1 ~~~~~v~~~~i~~is~~~~~lp~~~~~~~~r~~~~~~l~~~~~~~~~~~p~l~p~~~~~i~~~~~~~~~~~~~~l~~~l~ 80 (317)
|.++||++++|..||++++++|+++++...|+.+.+++.++.+++|++.|.+||+++|++++.++.+...+++.|++++.
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 773 (1010)
T 2xgj_A 694 CAVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLS 773 (1010)
T ss_dssp EEEEEECGGGEEEEEEEECCCCSSTTCSSSHHHHHHHHHHHHHHSSSCCCBCCTTTTSCCCCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEechhhcceeeeeeEecccccCChHHHHHHHHHHHHHHHhcccCCcccCchhhhccccHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCCCCCCccchhhHHhhhhcCCCh
Q 021133 81 AHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDE 159 (317)
Q Consensus 81 ~~p~~~c-~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~ef~~~~~vL~~lgyid~~~~vt~kGrvA~eI~s~~e 159 (317)
+||||.| ++++|+++++++.+++.+++++++++++.+++.++++|+++++||++|||||++++||+|||+||+|+++||
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~~~~v~~kGr~a~~i~~~~e 853 (1010)
T 2xgj_A 774 SNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDE 853 (1010)
T ss_dssp TSHHHHSSSHHHHHHHHHHC-CHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSBCTTCCBCHHHHHHHTCCSSCH
T ss_pred hCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCcCCCCcccHHHHHHHHhcCccH
Confidence 9999999 999999999999999999999999999988888899999999999999999988999999999999999999
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHhhhcccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhccCcc
Q 021133 160 LLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRP 239 (317)
Q Consensus 160 LlltEll~~g~f~~L~p~elaAllS~~v~e~~~~~~~~~~~~l~~~~~~l~~~a~~i~~~~~~~~l~~~~~~~~~~~~~~ 239 (317)
||+|||||+|+|++|+|+||||+|||||||+++++.|.+++.|.+++++++++|++|+++|.+||+++++++|+++ |+|
T Consensus 854 l~~~e~~~~g~~~~l~p~~~aa~~s~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 932 (1010)
T 2xgj_A 854 LLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVES-FRH 932 (1010)
T ss_dssp HHHHHHHHHTTTTTCCHHHHHHHHHHHHCCCCCSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHT-SCC
T ss_pred HHHHHHHHcCccCCCCHHHHHHHHeeeEeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHhccc-CCh
Confidence 9999999999999999999999999999999988888899999999999999999999999999999999999999 999
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCccccCCCCC
Q 021133 240 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL 317 (317)
Q Consensus 240 ~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~ellrQl~~aa~~ig~~~L~~k~~~a~~~I~RdIVf~~SLYl 317 (317)
+||++||+||+|+||++||++|+++|||||||||||+||||||++||++|||++|++||++|+++|||||||++||||
T Consensus 933 ~l~~~v~~Wa~g~~~~~i~~~t~~~eG~~vR~~~rl~ell~q~~~a~~~~g~~~l~~~~~~a~~~i~R~iv~~~sly~ 1010 (1010)
T 2xgj_A 933 ELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAVLKLIHRDIVSAGSLYL 1010 (1010)
T ss_dssp TTHHHHHHHTTTCCHHHHTTSCSSCHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCGGGGCCCC-C
T ss_pred HHHHHHHHHhCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhccCCeEecccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-80 Score=668.55 Aligned_cols=316 Identities=41% Similarity=0.726 Sum_probs=280.3
Q ss_pred CEEEEeecCccccccceeEEcCCCCCChhHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCChHHHHHHHHHHHHHHHHH
Q 021133 1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF 80 (317)
Q Consensus 1 ~~~~~v~~~~i~~is~~~~~lp~~~~~~~~r~~~~~~l~~~~~~~~~~~p~l~p~~~~~i~~~~~~~~~~~~~~l~~~l~ 80 (317)
+.++|||+++|..||++++++|+++++.+.|+++.+++.++.+++|.|.|.+||+++|++.+.++.++..+++.|+++|.
T Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 871 (1108)
T 3l9o_A 792 CAVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLS 871 (1108)
T ss_dssp CCCCCEESSCEEEEEEEECCCCTTTTSHHHHHHHHHHHHHHHHHCSSCCTTHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEechhheeeccceEEecCCCcCCHHHHHHHHHHHHHHHHhcCCCCcccChhhhcccCCHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCCCCCCccchhhHHhhhhcCCCh
Q 021133 81 AHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDE 159 (317)
Q Consensus 81 ~~p~~~c-~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~ef~~~~~vL~~lgyid~~~~vt~kGrvA~eI~s~~e 159 (317)
+||||.| ++++|+++++++.+++.+++++++++++++++.++++|+++++||++|||||++++||+||||||+|+|+||
T Consensus 872 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~~~~v~~kgr~a~~i~~~~e 951 (1108)
T 3l9o_A 872 SNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDE 951 (1108)
T ss_dssp HSSCTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHTSCTTTCCCSHHHHHHHC-CCTTH
T ss_pred hCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCcCCCCcCcHHhHHHHHhcCccH
Confidence 9999999 999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHhhhcccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhccCcc
Q 021133 160 LLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRP 239 (317)
Q Consensus 160 LlltEll~~g~f~~L~p~elaAllS~~v~e~~~~~~~~~~~~l~~~~~~l~~~a~~i~~~~~~~~l~~~~~~~~~~~~~~ 239 (317)
||+|||||+|+|++|+|+|+||+|||||||+|+++.|.+++.|.+++.+++++|++|++++.+||+++++++|+.+ |+|
T Consensus 952 l~~~e~~~~~~~~~l~~~~~aa~~s~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~ 1030 (1108)
T 3l9o_A 952 LLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVES-FRH 1030 (1108)
T ss_dssp HHHHHHHHHHCCCSSCCTHHHHHTCC------------------CHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHH-HCC
T ss_pred HHHHHHHHhCcccCCCHHHHHHHHhheeeecccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHhccC-CCh
Confidence 9999999999999999999999999999999998888899999999999999999999999999999999999999 999
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCccccCCCCC
Q 021133 240 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL 317 (317)
Q Consensus 240 ~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~ellrQl~~aa~~ig~~~L~~k~~~a~~~I~RdIVf~~SLYl 317 (317)
+||++||+||+|+||++||++|+++|||||||||||+|+||||++||++|||++|.+||++|+++|||||||++||||
T Consensus 1031 ~l~~~v~~Wa~g~~f~~i~~~t~~~eG~~vR~~~rl~e~l~q~~~aa~~~g~~~l~~k~~~a~~~i~r~iv~~~slyl 1108 (1108)
T 3l9o_A 1031 ELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAVLKLIHRDIVSAGSLYL 1108 (1108)
T ss_dssp SCHHHHHHHHC----CCGGGTC--CHHHHHHHHHHHHHHHSCCCC----CCCHHHHHHHHHHHHHHHHHTCCCCCCC-
T ss_pred HHHHHHHHHhCCCCHHHHHhcCCCCchhhhhHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCEEeeccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999997
No 3
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1e-76 Score=635.27 Aligned_cols=310 Identities=24% Similarity=0.405 Sum_probs=273.2
Q ss_pred CEEEEeecCccccccceeEEcC-CCC--CChhHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCChHHHHHHHHHHHHHH
Q 021133 1 MHVVPVQLPLISTLSKIRLSVP-PDL--RPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEH 77 (317)
Q Consensus 1 ~~~~~v~~~~i~~is~~~~~lp-~~~--~~~~~r~~~~~~l~~~~~~~~~~~p~l~p~~~~~i~~~~~~~~~~~~~~l~~ 77 (317)
+.+++||+++|..||++++++| +++ +++..++++.+.+.++.+. |.++|+++|++++.++.+...+++.++.
T Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (997)
T 4a4z_A 680 FYMEEVPVTAIEVITKRKFAAPLGKVIKKDVAALNEFNAETNNILDG-----KTLKEAINIEKQGLKIHQILLDRTNIRD 754 (997)
T ss_dssp CCEEEEECC-CCEEEEEECC-CHHHHHHTCHHHHHHHHHHHHHHHHS-----CCCCCC------CCHHHHHHHHHHHHHH
T ss_pred eEEEEeccchhhhhhcccccCChHhhhcCCHHHHHHHHHHHHHHhcc-----CCCCchhhcccccHHHHHHHHHHHHHHH
Confidence 3578999999999999888888 543 3678889999999888655 7789999999999999999999999999
Q ss_pred HHHcCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCCCCCCccchhhHHhhhhcC
Q 021133 78 KLFAHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDT 156 (317)
Q Consensus 78 ~l~~~p~~~c-~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~ef~~~~~vL~~lgyid~~~~vt~kGrvA~eI~s 156 (317)
++.+||||.| ++++|+++++++.+++.+++++++++++ +++.++++|+++++||++|||||++++||+||||||||+|
T Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~vL~~l~~~~~~~~v~~kgr~a~~i~~ 833 (997)
T 4a4z_A 755 EIFKLKSIKCPNLSQHIVPKFKAHVIKKKIEELYHLMSD-QNLSLLPDYEKRLAVLKDTEFIDQNHNVLLKGRVACEINS 833 (997)
T ss_dssp C------------CCSHHHHHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHHHHHHTTSBCTTCCBCHHHHHHTTCCS
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHcCCcCCCCcccHHhHHHhhhcC
Confidence 9999999999 9999999999999999999999999999 7777899999999999999999999999999999999999
Q ss_pred CChHHHHHHHhhCCCCCCCHHHHHHHhhhcccccCC--CccccccHHHHHHHHHHHHHHHHHHHHHHHcCCCCC--hhhh
Q 021133 157 GDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKS--SEQINLRMELAKPLQQLQESARKIAEIQNECKLEVN--VDEY 232 (317)
Q Consensus 157 ~~eLlltEll~~g~f~~L~p~elaAllS~~v~e~~~--~~~~~~~~~l~~~~~~l~~~a~~i~~~~~~~~l~~~--~~~~ 232 (317)
+|||++|||||+|+|++|+|+|+||+|||||||+|+ ++.|.+++.|.+++.+++++|.+|++++.+||++++ +++|
T Consensus 834 ~~el~~te~~~~~~~~~l~~~~~~a~ls~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 913 (997)
T 4a4z_A 834 GYELVLTELILDNFLGSFEPEEIVALLSVFVYEGKTREEEPPIVTPRLAKGKQRIEEIYKKMLCVFNTHQIPLTQDEAEF 913 (997)
T ss_dssp SCHHHHHHHHHSSGGGGCCHHHHHHHHGGGSCCCCCSSCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHG
T ss_pred ccHHHHHHHHHhCcccCCCHHHHHHHHhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCccchhhh
Confidence 999999999999999999999999999999999998 444778999999999999999999999999999986 4689
Q ss_pred hhccCcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCcccc
Q 021133 233 VESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFS 312 (317)
Q Consensus 233 ~~~~~~~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~ellrQl~~aa~~ig~~~L~~k~~~a~~~I~RdIVf~ 312 (317)
+.+ |+|+||+|||+||+|+||++||++||++|||||||||||+|+||||++||++|||++|++||++|+++|||||||+
T Consensus 914 ~~~-~~~~l~~~v~~Wa~g~~f~~i~~~t~~~eG~~vR~~~rl~e~~~q~~~aa~~~g~~~l~~k~~~a~~~i~R~iv~~ 992 (997)
T 4a4z_A 914 LDR-KRFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVITWLDEICREVKTASIIIGNSTLHMKMSRAQELIKRDIVFA 992 (997)
T ss_dssp GGS-CTTTTHHHHHHHHHTCCHHHHHHTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCGGGGC
T ss_pred ccC-CChHHHHHHHHHhCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeeec
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 021133 313 NSLYL 317 (317)
Q Consensus 313 ~SLYl 317 (317)
+||||
T Consensus 993 ~slyl 997 (997)
T 4a4z_A 993 ASLYL 997 (997)
T ss_dssp CCTTC
T ss_pred ccccC
Confidence 99997
No 4
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=96.51 E-value=0.03 Score=57.24 Aligned_cols=173 Identities=12% Similarity=0.067 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHhCCCCCCC---ccchhhHHhhhhcCCChHHHHHHHhhCCCC--CCCHHHHHHHhhhcc-cccCCCccc
Q 021133 123 DELKNRSRVLKKLGHINADG---VVQLKGRAACLIDTGDELLVTELMFNGTFN--DLDHHQVAALASCFI-PVDKSSEQI 196 (317)
Q Consensus 123 ~ef~~~~~vL~~lgyid~~~---~vt~kGrvA~eI~s~~eLlltEll~~g~f~--~L~p~elaAllS~~v-~e~~~~~~~ 196 (317)
+.+..-++.|.++|+|+.++ .+|.-|+.++..+- +.- .+.++..+.=. ..+..++..++|+.. |+ + .
T Consensus 471 ~~~~~al~~L~~~g~i~~~~~~~~~t~lG~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~----~-~ 543 (715)
T 2va8_A 471 VYFDRAIRWLLEHSFIKEEGNTFALTNFGKRVADLYI-NPF-TADIIRKGLEGHKASCELAYLHLLAFTPDGP----L-V 543 (715)
T ss_dssp HHHHHHHHHHHHTTSEEECSSEEEECHHHHHHHHHTC-CHH-HHHHHHHHHHHSCCCCHHHHHHHHHHSTTSC----C-C
T ss_pred HHHHHHHHHHHHCcCEeecCCeEeeChHHHHHHHHcC-CHh-HHHHHHHHhhhccCCCHHHHHHHhhcCcccc----c-C
Confidence 35888899999999998763 79999999999986 332 33444332211 245556666555432 21 1 1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHcC---CCCChhhhhhccCcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHH
Q 021133 197 NLRMELAKPLQQLQESARKIAEIQNECK---LEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSAR 273 (317)
Q Consensus 197 ~~~~~l~~~~~~l~~~a~~i~~~~~~~~---l~~~~~~~~~~~~~~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~ir 273 (317)
...+.=.+.+ .+.+.+ . ...+ .+.....|......+...-+.++|.+|.++.+|++..++..||+.....
T Consensus 544 ~~r~~e~~~l---~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~ 616 (715)
T 2va8_A 544 SVGRNEEEEL---IELLED---L-DCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVE 616 (715)
T ss_dssp CCCHHHHHHH---HHHHTT---C-SSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred ccChHHHHHH---HHHHHh---c-chhhcccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHHHHHH
Confidence 1222111111 111100 0 0111 1111111211001235677889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCc
Q 021133 274 RLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGI 309 (317)
Q Consensus 274 Rl~ellrQl~~aa~~ig~~~L~~k~~~a~~~I~RdI 309 (317)
...-+++.+...+...|...+...+..-...|..++
T Consensus 617 ~a~~l~~a~~~i~~~~~~~~~~~~l~~l~~rl~~gv 652 (715)
T 2va8_A 617 TMDWLTYSAYHLSRELKLNEHADKLRILNLRVRDGI 652 (715)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999988888877777776665
No 5
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=95.06 E-value=0.23 Score=50.59 Aligned_cols=155 Identities=15% Similarity=0.071 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhCCCCCC--CccchhhHHhhhhcCCChHHHHHHHhhCCCCC-CCHHHHHHHhhhcccccCCCcccccc
Q 021133 123 DELKNRSRVLKKLGHINAD--GVVQLKGRAACLIDTGDELLVTELMFNGTFND-LDHHQVAALASCFIPVDKSSEQINLR 199 (317)
Q Consensus 123 ~ef~~~~~vL~~lgyid~~--~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~-L~p~elaAllS~~v~e~~~~~~~~~~ 199 (317)
+.+..-++.|.++|+|+.+ +.+|.-||.++..+- +. -.+.++..+.=.. .+..++-.++|.... .++.+.-+
T Consensus 453 ~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~l~~i~~~~e---~~~i~~r~ 527 (702)
T 2p6r_A 453 YELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYI-DP-LTGFIFHDVLSRMELSDIGALHLICRTPD---MERLTVRK 527 (702)
T ss_dssp HHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTTC-CH-HHHHHHHHHTTTCCCCHHHHHHHHHHSTT---SCCCCCCT
T ss_pred HHHHHHHHHHHHCcCeeECCeeccChHHHHHHHHhC-CH-HHHHHHHHHhhcccCCHHHHHHHhhCCcc---cccCCCCC
Confidence 4678889999999999876 679999999999885 33 3455555554332 455566555543221 01111001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC-CCC---hhhhhhccCcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHH
Q 021133 200 MELAKPLQQLQESARKIAEIQNECKL-EVN---VDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRL 275 (317)
Q Consensus 200 ~~l~~~~~~l~~~a~~i~~~~~~~~l-~~~---~~~~~~~~~~~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl 275 (317)
.+ .. + .+...+ . .+++ +.+ ..+|-.........-+.++|.+|.++.+|++..++..||+.......
T Consensus 528 ~e-~~-~---~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~a 597 (702)
T 2p6r_A 528 TD-SW-V---EEEAFR---L--RKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETA 597 (702)
T ss_dssp TT-HH-H---HHHHHH---H--GGGSSCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred ch-HH-H---HHHHHh---c--cccccCCcchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcHHhHHHHHHHH
Confidence 11 11 1 111111 0 1222 222 10011000123467788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCH
Q 021133 276 DEFLNQLRAAAQAVGEV 292 (317)
Q Consensus 276 ~ellrQl~~aa~~ig~~ 292 (317)
.-+++-+...+...|..
T Consensus 598 ~~l~~a~~~i~~~~g~~ 614 (702)
T 2p6r_A 598 EWLSNAMNRIAEEVGNT 614 (702)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCHH
Confidence 99999999998888864
No 6
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.40 E-value=0.5 Score=48.26 Aligned_cols=174 Identities=14% Similarity=0.116 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHhCCCC-CCC---ccchhhHHhhhhcCCChHHHHHHHhhCCCC---CCCHHHHHHHhhhcccccCCCcc
Q 021133 123 DELKNRSRVLKKLGHIN-ADG---VVQLKGRAACLIDTGDELLVTELMFNGTFN---DLDHHQVAALASCFIPVDKSSEQ 195 (317)
Q Consensus 123 ~ef~~~~~vL~~lgyid-~~~---~vt~kGrvA~eI~s~~eLlltEll~~g~f~---~L~p~elaAllS~~v~e~~~~~~ 195 (317)
+.+...++.|.++|+|+ .++ .+|.-|+.+++.+- +.- .+.++..+.=. ..+..++-.++|..-. .+..
T Consensus 454 ~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e---~~~i 528 (720)
T 2zj8_A 454 EKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYI-DPY-TAKMFKDKMEEVVKDPNPIGIFHLISLTPD---ITPF 528 (720)
T ss_dssp HHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHTC-CHH-HHHHHHHHHHHHHHSCCHHHHHHHHHTSTT---CCCC
T ss_pred HHHHHHHHHHHHCCCeeECCCCcEeeChHHHHHHHHcC-CHH-HHHHHHHHHHhhccCCCHHHHHHHhccCcc---cccc
Confidence 46888899999999998 544 69999999999986 332 33333332101 1344566665554320 0111
Q ss_pred ccccH-HHHHHHHHHHHHHHHHHHHHHHc--CCCCCh--hh--hhhccCcccHHHHHHHhhCCCCHHHHHhhcCCCcchH
Q 021133 196 INLRM-ELAKPLQQLQESARKIAEIQNEC--KLEVNV--DE--YVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSI 268 (317)
Q Consensus 196 ~~~~~-~l~~~~~~l~~~a~~i~~~~~~~--~l~~~~--~~--~~~~~~~~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdi 268 (317)
.+.+ +.. .+.+... +...+. .++... ++ |......+...-+.++|.++.++.+|.+..++..||+
T Consensus 529 -~~r~~e~~----~l~~~~~---~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gdl 600 (720)
T 2zj8_A 529 -NYSKREFE----RLEEEYY---EFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDI 600 (720)
T ss_dssp -CCCHHHHH----HHHHHHH---HHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHH
T ss_pred -ccCHHHHH----HHHHHHH---hccccccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHHHHHHHhCCChHhH
Confidence 1222 211 1111111 110111 122211 11 1110012346678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCc
Q 021133 269 IRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGI 309 (317)
Q Consensus 269 VR~irRl~ellrQl~~aa~~ig~~~L~~k~~~a~~~I~RdI 309 (317)
........-+++-+...+...|...+...+..-...|.-++
T Consensus 601 ~~~~~~a~~l~~a~~~i~~~~g~~~~~~~l~~l~~rl~~gv 641 (720)
T 2zj8_A 601 YRIVETAEWLVYSLKEIAKVLGAYEIVDYLETLRVRVKYGI 641 (720)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999998766666665555444443
No 7
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=90.46 E-value=3.7 Score=37.06 Aligned_cols=136 Identities=16% Similarity=0.173 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhcccccCCCccccccHHH
Q 021133 123 DELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMEL 202 (317)
Q Consensus 123 ~ef~~~~~vL~~lgyid~~~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~v~e~~~~~~~~~~~~l 202 (317)
+.+.+=...|..+|.||++|.+|.-||..+++-. +.-+---++....|.-+ ++++.+.|++-.++- . ..+.+-
T Consensus 18 ~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl-~P~lakmLl~a~~~~c~--~~~l~iaA~Ls~~~~--f--~~p~~~ 90 (270)
T 3i4u_A 18 ETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPL-EPMLCKMLIMSVHLGCS--EEMLTIVSMLSVQNV--F--YRPKDK 90 (270)
T ss_dssp HHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCS-CHHHHHHHHHHHHTTCH--HHHHHHHHHHTSSCC--B--CCCGGG
T ss_pred HHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCC-CHHHHHHHHHhhhcCCH--HHHHHHHHHHCCCcc--c--cCCchh
Confidence 3566778899999999999999999999999974 55444444444344433 333444444332211 0 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhccCcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHH
Q 021133 203 AKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQL 282 (317)
Q Consensus 203 ~~~~~~l~~~a~~i~~~~~~~~l~~~~~~~~~~~~~~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~ellrQl 282 (317)
++ .+. +...++..+..|+ ..+..+..+|.+...=.+-|+..-+.. +.+++..++-+|+
T Consensus 91 ~~-------~a~-----~~~~~f~~~~sD~------ltlLn~~~~~~~~~~~~~wC~~~fL~~----~~l~~~~~ir~QL 148 (270)
T 3i4u_A 91 QA-------LAD-----QKKAKFHQTEGDH------LTLLAVYNSWKNNKFSNPWCYENFIQA----RSLRRAQDIRKQM 148 (270)
T ss_dssp HH-------HHH-----HHHHTTCBTTBHH------HHHHHHHHHHHHTTTCHHHHHHTTBCH----HHHHHHHHHHHHH
T ss_pred HH-------HHH-----HHHHHccCCCChH------HHHHHHHHHHHHcCchhhHHHHhcCCH----HHHHHHHHHHHHH
Confidence 11 011 1112332222222 356677777854322234454443433 5667777888888
Q ss_pred HHHHh
Q 021133 283 RAAAQ 287 (317)
Q Consensus 283 ~~aa~ 287 (317)
....+
T Consensus 149 ~~~l~ 153 (270)
T 3i4u_A 149 LGIMD 153 (270)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 8
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=88.67 E-value=1 Score=36.57 Aligned_cols=65 Identities=14% Similarity=0.217 Sum_probs=52.6
Q ss_pred CcccHHHHHHHh-hCCCCHHHHHhhcCC-CcchHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 021133 237 VRPFLMDVIYCW-SKGATFAEVIQMTDI-FEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAAS 302 (317)
Q Consensus 237 ~~~~l~~vv~~W-a~G~~f~ei~~~t~l-~EGdiVR~irRl~ellrQl~~aa~~ig~~~L~~k~~~a~ 302 (317)
|++.+++-+..+ +.|.|+.+||...+| +.-+|=||+.+=.|+..++..|-. .+...+.+.+.+..
T Consensus 13 ~t~e~~e~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~~~ef~e~~~~Ar~-~~~~~~~~~~~~ia 79 (140)
T 4dyq_A 13 YMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHEDFRDKYAKATE-ARADSIFEEIFEIA 79 (140)
T ss_dssp CCTTHHHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHHCHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHcCHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 889999988888 999999999999999 899999999999998888887733 24445555544433
No 9
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=81.50 E-value=15 Score=32.56 Aligned_cols=124 Identities=13% Similarity=0.048 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhCCCCC----CC------ccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhcccccCC
Q 021133 123 DELKNRSRVLKKLGHINA----DG------VVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKS 192 (317)
Q Consensus 123 ~ef~~~~~vL~~lgyid~----~~------~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~v~e~~~ 192 (317)
...-++++=|++.|||.. ++ .+|.||+-..+-- . +++...+..+--+ .-
T Consensus 65 ~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~~~~--~------------------~~~~~~~eq~s~E-~~ 123 (250)
T 1p4x_A 65 SDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAER--V------------------TLFDQIIKQFNLA-DQ 123 (250)
T ss_dssp GGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHHHH--H------------------HHHHHHHHHHHHH-TT
T ss_pred hhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHHHHH--H------------------HHHHHHHHHHhcc-cc
Confidence 356678889999999943 22 4999998743211 0 0111111111111 10
Q ss_pred CccccccHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhccCcccHHHHHHHhhCC---CCHHHHHhhcCCCcchHH
Q 021133 193 SEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKG---ATFAEVIQMTDIFEGSII 269 (317)
Q Consensus 193 ~~~~~~~~~l~~~~~~l~~~a~~i~~~~~~~~l~~~~~~~~~~~~~~~l~~vv~~Wa~G---~~f~ei~~~t~l~EGdiV 269 (317)
+-.+-++..+...+.....+......+...+|+..+. +..+. +-|.+| .+..+|.+...+..|++.
T Consensus 124 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gLt~~q---------~~vL~--~L~~~~~~~~t~~eLa~~l~i~~~tvt 192 (250)
T 1p4x_A 124 SESQMIPKDSKEFLNLMMYTMYFKNIIKKHLTLSFVE---------FTILA--IITSQNKNIVLLKDLIETIHHKYPQTV 192 (250)
T ss_dssp CCSSCSCCSHHHHHHHHHHHHHHHHHHHHHCSSCHHH---------HHHHH--HHHTTTTCCEEHHHHHHHSSSCHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHhhCCCCHHH---------HHHHH--HHHhCCCCCcCHHHHHHHHCCChhhHH
Confidence 0011122224443333333444445566778875331 23333 345443 799999999999999999
Q ss_pred HHHHHHHHH
Q 021133 270 RSARRLDEF 278 (317)
Q Consensus 270 R~irRl~el 278 (317)
|.+.||++-
T Consensus 193 ~~v~rLe~~ 201 (250)
T 1p4x_A 193 RALNNLKKQ 201 (250)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHC
Confidence 999999863
No 10
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=78.29 E-value=3.3 Score=28.36 Aligned_cols=49 Identities=12% Similarity=0.074 Sum_probs=38.2
Q ss_pred CcccHHHHHHH-hhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHH
Q 021133 237 VRPFLMDVIYC-WSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAA 285 (317)
Q Consensus 237 ~~~~l~~vv~~-Wa~G~~f~ei~~~t~l~EGdiVR~irRl~ellrQl~~a 285 (317)
+++.--.++.. +..|.|+.+|.+..+++++.+=+.+.|...-|++.-..
T Consensus 16 L~~~~r~il~l~~~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~~ 65 (70)
T 2o8x_A 16 LTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEP 65 (70)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhhc
Confidence 55666666654 69999999999999999999999999988888765443
No 11
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=74.43 E-value=2.1 Score=31.00 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=19.5
Q ss_pred HHHhhcCCCcchHHHHHHHHHHHH
Q 021133 256 EVIQMTDIFEGSIIRSARRLDEFL 279 (317)
Q Consensus 256 ei~~~t~l~EGdiVR~irRl~ell 279 (317)
+++..-++.||||||.++.++...
T Consensus 42 ~~Lr~LGi~eGDIIrVmk~l~~k~ 65 (72)
T 3idw_A 42 SMLRTLGLREGDIVRVMKHLDKKF 65 (72)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCchhhHHHHHHHHHHHh
Confidence 456666889999999999988754
No 12
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=73.86 E-value=3.2 Score=25.82 Aligned_cols=34 Identities=6% Similarity=-0.138 Sum_probs=29.6
Q ss_pred HHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHH
Q 021133 242 MDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRL 275 (317)
Q Consensus 242 ~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl 275 (317)
..++..|..|.|..+|.+..+++..++-|++++.
T Consensus 12 ~~i~~~~~~g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 12 AQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 4666778899999999999999999999988764
No 13
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=73.56 E-value=3.6 Score=42.66 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCH-HHHHHHhh
Q 021133 123 DELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDH-HQVAALAS 184 (317)
Q Consensus 123 ~ef~~~~~vL~~lgyid~~~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p-~elaAllS 184 (317)
..+.+-+..|..+|.||+++.+|.-|+.++++.- +.-+---++....|.-+++ -.|||+||
T Consensus 489 ~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl-~p~~~~~l~~~~~~~c~~~~l~i~a~ls 550 (773)
T 2xau_A 489 ETMMRALEELNYLACLDDEGNLTPLGRLASQFPL-DPMLAVMLIGSFEFQCSQEILTIVAMLS 550 (773)
T ss_dssp HHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSS-CHHHHHHHHHGGGGTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCcccCCCcChhhhhhccccC-CHHHHHHHHhhcccCchhHHHHHHHhcc
Confidence 4678889999999999999999999999999985 5544444444444443322 23444444
No 14
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=68.14 E-value=10 Score=30.42 Aligned_cols=61 Identities=15% Similarity=0.137 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhCCCCC-----CC-----ccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 122 RDELKNRSRVLKKLGHINA-----DG-----VVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 122 ~~ef~~~~~vL~~lgyid~-----~~-----~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
.+..-++++-|.+.|||.. |. .+|.+|+-+.+-- .+ ...-+.+.+|.+++++|+..+...+
T Consensus 60 ~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~~--~~--~~~~~~~~~~~~l~~ee~~~l~~~L 130 (151)
T 4aik_A 60 QPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQV--DG--VISSTRKEILGGISSDEIAVLSGLI 130 (151)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHHH--HH--HHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHHH--HH--HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4578889999999999952 21 4899998766432 11 2233455678889999998876554
No 15
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=67.39 E-value=11 Score=27.47 Aligned_cols=48 Identities=17% Similarity=0.083 Sum_probs=38.9
Q ss_pred CcccHHHHHHH-hhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHH
Q 021133 237 VRPFLMDVIYC-WSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRA 284 (317)
Q Consensus 237 ~~~~l~~vv~~-Wa~G~~f~ei~~~t~l~EGdiVR~irRl~ellrQl~~ 284 (317)
+.+.--.++.. +..|.|..||.+..++++|.+=+.+.|...-|++.-.
T Consensus 38 L~~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 45555556655 6899999999999999999999999888888776543
No 16
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=66.85 E-value=32 Score=26.34 Aligned_cols=67 Identities=4% Similarity=0.093 Sum_probs=48.7
Q ss_pred CcccHHHHHHH-hhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhc
Q 021133 237 VRPFLMDVIYC-WSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLR 306 (317)
Q Consensus 237 ~~~~l~~vv~~-Wa~G~~f~ei~~~t~l~EGdiVR~irRl~ellrQl~~aa~~ig~~~L~~k~~~a~~~I~ 306 (317)
+++.--.++.. +..|.|..||.+..++++|++=+.+.|.-.-|++.-.-. |..+..++.....+.|+
T Consensus 26 L~~~~r~vl~l~~~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~---~~~~~~~~~~~~~~~~~ 93 (113)
T 1xsv_A 26 LTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKL---ELYQKFEQRREIYDEMK 93 (113)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHH---hHHhHHHHHHHHHHHHH
Confidence 55555566655 489999999999999999999999999888888765433 34455555555555553
No 17
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=60.27 E-value=18 Score=28.28 Aligned_cols=61 Identities=18% Similarity=0.062 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhCCCCCC----------CccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 122 ~~ef~~~~~vL~~lgyid~~----------~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
.+...+.++-|.+.|||... -.+|.+|+-..+-.. + ...-+...+|.+++++|+..+...+
T Consensus 71 ~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~L 141 (148)
T 3jw4_A 71 GASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFN--N--IFLEVEESITKGLTKDEQKQLMSIL 141 (148)
T ss_dssp --CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHHH--H--HHHHHHHHTTTTCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 35677889999999999642 249999987765431 1 2344556688999999998876654
No 18
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=58.16 E-value=12 Score=26.90 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=37.9
Q ss_pred CcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHH
Q 021133 237 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLN 280 (317)
Q Consensus 237 ~~~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~ellr 280 (317)
+.+.-.+++...+.|.|..||.+..+++++++=+.++|...-|+
T Consensus 22 Lt~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 22 LTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp SCHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 77777788888899999999999999999999888887766654
No 19
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=58.13 E-value=14 Score=25.23 Aligned_cols=44 Identities=14% Similarity=-0.014 Sum_probs=37.5
Q ss_pred CcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHH
Q 021133 237 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLN 280 (317)
Q Consensus 237 ~~~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~ellr 280 (317)
+++.-.+++..++.|.|..+|.+..+++++++=+.+.|+.+-|+
T Consensus 12 L~~~e~~il~~~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 12 LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 66777778888899999999999999999999888888766554
No 20
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=57.84 E-value=17 Score=28.42 Aligned_cols=49 Identities=14% Similarity=0.170 Sum_probs=39.4
Q ss_pred CcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHH
Q 021133 237 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAA 285 (317)
Q Consensus 237 ~~~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~ellrQl~~a 285 (317)
+++.--.|+..+..|.|+.||.+..++++|.+=+.+.|...-|++.-..
T Consensus 110 L~~~~r~v~~~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~~ 158 (164)
T 3mzy_A 110 FSKFEKEVLTYLIRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIKE 158 (164)
T ss_dssp SCHHHHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566789999999999999999999998888888877765543
No 21
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=56.26 E-value=6.2 Score=24.82 Aligned_cols=34 Identities=12% Similarity=0.013 Sum_probs=28.6
Q ss_pred HHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHH
Q 021133 242 MDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRL 275 (317)
Q Consensus 242 ~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl 275 (317)
-.++..|..|.|..+|.+..+++..++-|++++.
T Consensus 12 ~~i~~l~~~g~s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 12 EQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp HHHHHHHHTTCCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred HHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHc
Confidence 4556668899999999999999999999887653
No 22
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=55.65 E-value=13 Score=28.76 Aligned_cols=61 Identities=15% Similarity=0.128 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhCCCCC-----CC-----ccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 122 RDELKNRSRVLKKLGHINA-----DG-----VVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 122 ~~ef~~~~~vL~~lgyid~-----~~-----~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
.+...++++-|.+.|||.. |. .+|.+|+-+.+-.. -...-+...+|.+++++|+..+...+
T Consensus 65 ~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~L 135 (143)
T 3oop_A 65 TPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTELR----DIVEASCEKMFAGVTRTDLEQFTAIL 135 (143)
T ss_dssp HHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHHH----HHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3567889999999999963 21 48999998775431 12233456677889999988876654
No 23
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=55.45 E-value=17 Score=26.36 Aligned_cols=46 Identities=15% Similarity=0.094 Sum_probs=35.0
Q ss_pred CcccH-HHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHH
Q 021133 237 VRPFL-MDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQL 282 (317)
Q Consensus 237 ~~~~l-~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~ellrQl 282 (317)
+.+.+ ..++..+..|.|..+|++..++...+|-||+++..+.-.+.
T Consensus 23 ys~e~k~~~v~~~~~g~s~~~iA~~~gIs~sTl~rW~k~~~~~~~~~ 69 (87)
T 2elh_A 23 LTPRDKIHAIQRIHDGESKASVARDIGVPESTLRGWCKNEDKLRFMS 69 (87)
T ss_dssp CCHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHHHHHhccccc
Confidence 34444 45666667899999999999999999999998876544443
No 24
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=54.93 E-value=52 Score=25.23 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=27.5
Q ss_pred ccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 239 PFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 239 ~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
+.++..++. ..|.+..+|.+..++..+++-|.+.||++
T Consensus 40 ~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 77 (142)
T 3ech_A 40 VHVLKLIDE-QRGLNLQDLGRQMCRDKALITRKIRELEG 77 (142)
T ss_dssp HHHHHHHHH-TTTCCHHHHHHHHC---CHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344444443 35799999999999999999999999986
No 25
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=53.85 E-value=43 Score=25.40 Aligned_cols=61 Identities=11% Similarity=0.171 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHc-CCCCChhhhhhccCcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 207 QQLQESARKIAEIQNEC-KLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 207 ~~l~~~a~~i~~~~~~~-~l~~~~~~~~~~~~~~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
..+..+.+.+.....+. |+... .+.++..++. ..|.+..+|.+..++..+.+-|.+++|++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~---------~~~iL~~l~~-~~~~~~~ela~~l~is~~~vs~~l~~L~~ 71 (142)
T 3bdd_A 10 YRLKVADETISNLFEKQLGISLT---------RYSILQTLLK-DAPLHQLALQERLQIDRAAVTRHLKLLEE 71 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHH---------HHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHH---------HHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444445554444443 55422 2344444433 46799999999999999999999999987
No 26
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=53.58 E-value=27 Score=27.31 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHhCCCCCC----------CccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 122 ~~ef~~~~~vL~~lgyid~~----------~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
.+...++++-|.+.|||... -.+|.+|+-+.+-. .+.+..-++.+++++++..+...+
T Consensus 69 ~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~-------~~~~~~~~~~~l~~~e~~~l~~~l 136 (149)
T 4hbl_A 69 SNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAV-------FEAISSCLPQEFDTTEYDETKYVF 136 (149)
T ss_dssp HHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHHH-------HHHHHTTSCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHHH-------HHHHHHHHHhhCCHHHHHHHHHHH
Confidence 45778899999999999642 14999999876421 122233378888888887776554
No 27
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=52.69 E-value=14 Score=25.66 Aligned_cols=44 Identities=9% Similarity=-0.028 Sum_probs=35.6
Q ss_pred CcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHH
Q 021133 237 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLN 280 (317)
Q Consensus 237 ~~~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~ellr 280 (317)
+.+.--+++..+..|.|..+|.+..+++++++=+.+.|...-|+
T Consensus 17 L~~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 17 LSERERQVLSAVVAGLPNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HCHHHHHHHHHHTTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 55555666666789999999999999999999888877766554
No 28
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=51.96 E-value=17 Score=23.89 Aligned_cols=37 Identities=14% Similarity=0.039 Sum_probs=30.7
Q ss_pred HHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHH
Q 021133 243 DVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFL 279 (317)
Q Consensus 243 ~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~ell 279 (317)
+++..++.|.|..||.+..+++++++=..+.|+.+-|
T Consensus 5 ~vl~l~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 5 QVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHHTSCCSHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4555579999999999999999999988877766554
No 29
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=51.07 E-value=46 Score=25.60 Aligned_cols=52 Identities=8% Similarity=0.004 Sum_probs=37.5
Q ss_pred HHHHHHHcCCCCChhhhhhccCcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 216 IAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 216 i~~~~~~~~l~~~~~~~~~~~~~~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
+......+|+..+ .+.++..++. ..|.+..+|.+..++..+++-|.+.+|++
T Consensus 20 ~~~~~~~~~lt~~---------q~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 71 (145)
T 3g3z_A 20 FDKWIGQQDLNYN---------LFAVLYTLAT-EGSRTQKHIGEKWSLPKQTVSGVCKTLAG 71 (145)
T ss_dssp HHHHHHTTTCCHH---------HHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHH---------HHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444556676422 2345555543 45799999999999999999999999876
No 30
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=50.80 E-value=12 Score=28.96 Aligned_cols=60 Identities=15% Similarity=0.137 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhCCCCCC----------CccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 123 DELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 123 ~ef~~~~~vL~~lgyid~~----------~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
+...++++-|.+.|||... -.+|.+|+-+.+-.. + ...-..+.+|.+++++|+..+...+
T Consensus 66 ~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 135 (142)
T 3ech_A 66 ALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHAE--L--IMSRVHDELFAPLTPVEQATLVHLL 135 (142)
T ss_dssp CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHHH--H--HHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4677889999999999641 249999998765432 1 2233345567889999988876654
No 31
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=50.43 E-value=17 Score=28.93 Aligned_cols=61 Identities=11% Similarity=0.114 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhCCCCC-----CC-----ccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 122 RDELKNRSRVLKKLGHINA-----DG-----VVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 122 ~~ef~~~~~vL~~lgyid~-----~~-----~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
.....++++-|.+.|||.. |. .+|.+|+-+.+-.. + ...-+...+|.+++++|+..+...+
T Consensus 81 ~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~L 151 (161)
T 3e6m_A 81 QSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEIS--P--LINDFHAELVGNVDPDKLQTCIEVL 151 (161)
T ss_dssp HHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHHH--H--HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4578889999999999963 11 48999998876432 1 2233445567789999988776554
No 32
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=50.40 E-value=26 Score=24.18 Aligned_cols=44 Identities=14% Similarity=0.003 Sum_probs=35.5
Q ss_pred CcccHHHHHHHhh-----CCCCHHHHHhhcCCCcchHHHHHHHHHHHHH
Q 021133 237 VRPFLMDVIYCWS-----KGATFAEVIQMTDIFEGSIIRSARRLDEFLN 280 (317)
Q Consensus 237 ~~~~l~~vv~~Wa-----~G~~f~ei~~~t~l~EGdiVR~irRl~ellr 280 (317)
+++.--.++..-. .|.|+.||-+..+++++.+=+.+.|...-|+
T Consensus 11 L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 11 LSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5555555554443 8999999999999999999998888887777
No 33
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=50.37 E-value=16 Score=28.69 Aligned_cols=61 Identities=10% Similarity=0.061 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhCCCCCC----------CccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 122 ~~ef~~~~~vL~~lgyid~~----------~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
.+...++++-|.+.|||... -.+|.+|+-+.+-.. =...-+...+|.+++++|+..+...+
T Consensus 68 ~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~L 138 (150)
T 3fm5_A 68 PSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAK----ARVDAAHGRYFEGIPDTVVNQMRDTL 138 (150)
T ss_dssp HHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHHH----HHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45678889999999999641 249999998776432 12233445567889999988876654
No 34
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=49.30 E-value=17 Score=29.39 Aligned_cols=61 Identities=13% Similarity=0.071 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhCCCCCC----------CccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 122 ~~ef~~~~~vL~~lgyid~~----------~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
.....++++-|.+.|||... -.+|.+|+-+..-.. + ...-+.+.+|.+++++|+..+...+
T Consensus 82 ~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~L 152 (166)
T 3deu_A 82 QPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEME--E--VIHKTRGEILAGISSEEIELLIKLI 152 (166)
T ss_dssp HHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHHH--H--HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHHHHH--H--HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45778899999999999642 148999998775432 1 2223445566788888888776654
No 35
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=49.26 E-value=86 Score=23.92 Aligned_cols=48 Identities=13% Similarity=0.224 Sum_probs=39.3
Q ss_pred CcccHHHHHHH-hhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHH
Q 021133 237 VRPFLMDVIYC-WSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRA 284 (317)
Q Consensus 237 ~~~~l~~vv~~-Wa~G~~f~ei~~~t~l~EGdiVR~irRl~ellrQl~~ 284 (317)
+++.--.++.. +..|.|..||.+..++++|++=+.+.|...-|++.-.
T Consensus 23 L~~~~r~vl~l~y~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~ 71 (113)
T 1s7o_A 23 LTDKQMNYIELYYADDYSLAEIADEFGVSRQAVYDNIKRTEKILETYEM 71 (113)
T ss_dssp SCHHHHHHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 55565666655 5899999999999999999999999998887776543
No 36
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=49.04 E-value=26 Score=27.71 Aligned_cols=55 Identities=11% Similarity=0.122 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCCCCChhhhhhccCcccHHHHHHHhhCC-CCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 214 RKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKG-ATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 214 ~~i~~~~~~~~l~~~~~~~~~~~~~~~l~~vv~~Wa~G-~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
.++......+|+..+ .+.+..+++.|-.| .+..+|.+...+..+++-|.+.||++
T Consensus 22 ~~~~~~l~~~gLt~~---------q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~ 77 (147)
T 4b8x_A 22 GEVDAVVKPYGLTFA---------RYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVR 77 (147)
T ss_dssp HHHHHHHGGGTCCHH---------HHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHH---------HHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344555566777533 24556666666554 89999999999999999999999875
No 37
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=48.74 E-value=38 Score=26.69 Aligned_cols=60 Identities=18% Similarity=0.246 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhCCCCC-----CC-----ccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 122 RDELKNRSRVLKKLGHINA-----DG-----VVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 122 ~~ef~~~~~vL~~lgyid~-----~~-----~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
.+..-++++-|.+.|||.. |. .+|.+|+-+.+-. .+.+ .+ + ...|.+++++|+..+...+
T Consensus 65 ~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~--~~~~-~~-~-~~~l~~l~~ee~~~l~~~L 134 (147)
T 4b8x_A 65 PTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVEAA--TRDL-MA-M-DFGLGAYDAEECGEIFAML 134 (147)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHHHH--HHHH-HH-T-GGGTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHHHH--HHHH-HH-H-HHHHhCCCHHHHHHHHHHH
Confidence 4578889999999999953 21 4899998776432 2222 22 2 4467899999988776554
No 38
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=47.06 E-value=24 Score=27.04 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=31.0
Q ss_pred ccHHHHHHHhh-CCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 239 PFLMDVIYCWS-KGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 239 ~~l~~vv~~Wa-~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
+.++..++..- .|.+..+|.+..++..+++-|.+.+|++
T Consensus 34 ~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 73 (139)
T 3eco_A 34 GHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLER 73 (139)
T ss_dssp HHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 34555554432 3789999999999999999999999976
No 39
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=46.88 E-value=25 Score=27.42 Aligned_cols=60 Identities=10% Similarity=0.134 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhCCCCC----C--------CccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 123 DELKNRSRVLKKLGHINA----D--------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 123 ~ef~~~~~vL~~lgyid~----~--------~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
+...+.++-|++.|||.. + -.+|.+|+-...-.. -..+-....+|.+++++|+..+...+
T Consensus 66 ~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~l 137 (151)
T 3kp7_A 66 AAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKERK----AIMSHIASDMTSDFDSKEIEKVRQVL 137 (151)
T ss_dssp SHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHHHH----HHHHHHHHHTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 467788999999999973 1 148999998765432 12334456688889999988877665
No 40
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=46.74 E-value=23 Score=27.42 Aligned_cols=61 Identities=7% Similarity=0.078 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhCCCCCC----------CccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 122 ~~ef~~~~~vL~~lgyid~~----------~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
.+...+.++-|++.|||... -.+|.+|+-+.+-.. +. ..-....+|.+++++|+..+...+
T Consensus 68 ~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~~--~~--~~~~~~~~~~~l~~~e~~~l~~~l 138 (148)
T 3nrv_A 68 KAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVAS--DF--AIEREKQLLEEFEEAEKDQLFILL 138 (148)
T ss_dssp HHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHHHH--HH--THHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHHHH--HH--HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35678889999999999642 248999988775431 11 122345567788998888776544
No 41
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=46.50 E-value=40 Score=27.77 Aligned_cols=69 Identities=12% Similarity=0.060 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhccCcccHHHHHHHh-hCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 202 LAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCW-SKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 202 l~~~~~~l~~~a~~i~~~~~~~~l~~~~~~~~~~~~~~~l~~vv~~W-a~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
+.+.+..+..++.++.....+.--++++ -.+.++.+++.. -.|.+..+|.+..++..+++-|.+.+|++
T Consensus 14 ~~~~~~~l~~~~~~~~~~~~~~~~~lt~-------~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 83 (189)
T 3nqo_A 14 MNQTYATLFTLTNKIQIEGDKYFGILTS-------RQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEK 83 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSCH-------HHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCH-------HHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445555556666655443332112333 223445545443 24799999999999999999999999875
No 42
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=46.49 E-value=24 Score=28.03 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhCCCCC-----C-----CccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 123 DELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 123 ~ef~~~~~vL~~lgyid~-----~-----~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
+...++++-|.+.|||.. | -.+|.+|+-+.+-.. + ...-+...+|.+++++|+..+...+
T Consensus 75 ~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~L 144 (162)
T 3k0l_A 75 QSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCN--Q--VVQQLEAQMLQGVDINLAFLIRNNL 144 (162)
T ss_dssp GGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHHH--H--HHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHHHH--H--HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 356788899999999953 2 149999998765432 1 2233455678889999988876655
No 43
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=46.33 E-value=28 Score=25.62 Aligned_cols=44 Identities=16% Similarity=0.061 Sum_probs=37.0
Q ss_pred CcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHH
Q 021133 237 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLN 280 (317)
Q Consensus 237 ~~~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~ellr 280 (317)
+.+.-.+++...+.|.|..||.+..+++++++=..+.|...-|+
T Consensus 28 Lt~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 28 LTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 66666677777799999999999999999999888888776664
No 44
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=46.07 E-value=28 Score=27.06 Aligned_cols=53 Identities=17% Similarity=0.129 Sum_probs=33.8
Q ss_pred HHHHHHHcCCCCChhhhhhccCcccHHHHHHHhh-CCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 216 IAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWS-KGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 216 i~~~~~~~~l~~~~~~~~~~~~~~~l~~vv~~Wa-~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
+......+|+..+ .+.++..++... .|.+..+|.+..++..+.+-|.+.||++
T Consensus 30 ~~~~~~~~glt~~---------q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 83 (148)
T 3jw4_A 30 ADARLAELGLNSQ---------QGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEK 83 (148)
T ss_dssp HHHHHHHTTCCHH---------HHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHH
T ss_pred HHHHHHHCCCCHH---------HHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 3444556776432 245666666654 6899999999999999999999999876
No 45
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=45.79 E-value=33 Score=28.24 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhCCCCC-----C-----CccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 122 RDELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 122 ~~ef~~~~~vL~~lgyid~-----~-----~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
.+...++++-|.+.|||.. | -.+|.+|+-+..-.. +. . .-+...+|.+++++++..+...+
T Consensus 71 ~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~--~~-~-~~~~~~~~~~l~~ee~~~l~~~L 141 (189)
T 3nqo_A 71 KQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCS--RT-G-INFMADVFHEFTKDELETLWSLL 141 (189)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHH--HH-H-HHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHH--HH-H-HHHHHHHHHhCCHHHHHHHHHHH
Confidence 3567889999999999953 2 148999998765432 11 1 22344578899999998876665
No 46
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=45.75 E-value=16 Score=28.14 Aligned_cols=61 Identities=15% Similarity=0.064 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhCCCCC-----C-----CccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 122 RDELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 122 ~~ef~~~~~vL~~lgyid~-----~-----~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
.+...++++-|.+.|||.. | -.+|.+|+-..+-.. + ...-+...+|++++++|+..+...+
T Consensus 61 ~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 131 (139)
T 3eco_A 61 GPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFT--S--IFDEMEQTLVSQLSEEENEQMKANL 131 (139)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHHH--H--HHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4577889999999999953 1 148999998876432 1 2223345567789999988876654
No 47
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=44.54 E-value=24 Score=27.18 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhCCCCC-----C-----CccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 122 RDELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 122 ~~ef~~~~~vL~~lgyid~-----~-----~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
.+...+.++-|.+.|||.. | -.+|.+|+-...-.. +. ..-+...+|.+++++++..+...+
T Consensus 57 ~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~~--~~~~~~~~~~~l~~~e~~~l~~~l 127 (144)
T 1lj9_A 57 RTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIV--RE--NQHSNQVALQGLSEVEISQLADYL 127 (144)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH--HH--HHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHHHH--HH--HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3567888999999999954 1 148999987765331 11 223445577788888887766555
No 48
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=44.49 E-value=23 Score=25.71 Aligned_cols=44 Identities=14% Similarity=0.152 Sum_probs=37.4
Q ss_pred CcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHH
Q 021133 237 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLN 280 (317)
Q Consensus 237 ~~~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~ellr 280 (317)
+.+.-.+++..++.|.|..||.+..+++++++=..+.|...-|+
T Consensus 30 Lt~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 30 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp CCSHHHHHHHHHHTTCCTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 77777777777899999999999999999999888887766554
No 49
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=44.25 E-value=58 Score=25.85 Aligned_cols=39 Identities=15% Similarity=0.113 Sum_probs=28.3
Q ss_pred ccHHHHHHHh-hCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 239 PFLMDVIYCW-SKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 239 ~~l~~vv~~W-a~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
+.++.+++.. -.|.+..+|.+..++..+.+-|.+.||++
T Consensus 49 ~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 88 (168)
T 3u2r_A 49 YNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDD 88 (168)
T ss_dssp HHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 3455555444 25899999999999999999999999975
No 50
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=43.22 E-value=26 Score=23.78 Aligned_cols=45 Identities=16% Similarity=0.031 Sum_probs=35.4
Q ss_pred CcccHHHHHHHhh-----CCCCHHHHHhhcCCCcchHHHHHHHHHHHHHH
Q 021133 237 VRPFLMDVIYCWS-----KGATFAEVIQMTDIFEGSIIRSARRLDEFLNQ 281 (317)
Q Consensus 237 ~~~~l~~vv~~Wa-----~G~~f~ei~~~t~l~EGdiVR~irRl~ellrQ 281 (317)
+++.--+++.... .|.|+.||-+..+++++.+=+.+.|...-|++
T Consensus 6 L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 5555566665555 89999999999999999988888877666554
No 51
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=43.15 E-value=46 Score=25.26 Aligned_cols=27 Identities=7% Similarity=-0.020 Sum_probs=25.3
Q ss_pred CCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 251 GATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 251 G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
|.+..+|.+..++..+.+-|.+++|++
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~ 76 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEI 76 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHH
Confidence 589999999999999999999999986
No 52
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=43.14 E-value=25 Score=25.46 Aligned_cols=53 Identities=8% Similarity=0.096 Sum_probs=37.3
Q ss_pred HHHHHHHHcCCCCChhhhhhccCcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 215 KIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 215 ~i~~~~~~~~l~~~~~~~~~~~~~~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
++......+|+.. ....++..+.. ..+.+..+|.+..++..+++-|.+++|.+
T Consensus 8 ~~~~~l~~~~l~~---------~~~~il~~l~~-~~~~s~~ela~~l~is~~tv~~~l~~L~~ 60 (109)
T 1sfx_A 8 ELVKALEKLSFKP---------SDVRIYSLLLE-RGGMRVSEIARELDLSARFVRDRLKVLLK 60 (109)
T ss_dssp HHHHHHHHTCCCH---------HHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCH---------HHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444445566632 22345554433 46799999999999999999999998876
No 53
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=42.93 E-value=20 Score=27.35 Aligned_cols=61 Identities=16% Similarity=0.120 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhCCCCCC----------CccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 122 ~~ef~~~~~vL~~lgyid~~----------~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
.+...+.++-|.+.|||... -.+|.+|+-...-. .+. ..-....++.+++++|+..+...+
T Consensus 66 ~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~--~~~--~~~~~~~~~~~l~~~e~~~l~~~l 136 (140)
T 2nnn_A 66 AATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEAG--LAA--AREINRQALAPLSLQEQETLRGLL 136 (140)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHHH--HHH--HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHHH--HHH--HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 35678889999999999641 24899998765432 111 223445567789999998876554
No 54
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=42.88 E-value=21 Score=28.12 Aligned_cols=60 Identities=8% Similarity=0.097 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhCCCCCC----------CccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 123 DELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 123 ~ef~~~~~vL~~lgyid~~----------~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
+...+.++-|.+.|||... -.+|.+|+-..+-. .+. ..-....+|.+++++++..+...+
T Consensus 77 ~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~--~~~--~~~~~~~~~~~l~~~e~~~l~~~l 146 (160)
T 3boq_A 77 GNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQA--SEA--HNRILAELLRAVSDQDMVEASAAL 146 (160)
T ss_dssp SCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHHH--HHH--HHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHHHH--HHH--HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3566788999999999642 24999998876532 111 123345567788888887766544
No 55
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=42.79 E-value=34 Score=26.23 Aligned_cols=53 Identities=19% Similarity=0.324 Sum_probs=37.1
Q ss_pred HHHHHHHcCCCCChhhhhhccCcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 216 IAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 216 i~~~~~~~~l~~~~~~~~~~~~~~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
+......+|+..+ ....+.+++.-..|.+..+|.+..++..+++-|.+.+|++
T Consensus 15 ~~~~~~~~gl~~~---------~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~ 67 (152)
T 1ku9_A 15 FSELAKIHGLNKS---------VGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEE 67 (152)
T ss_dssp HHHHHHHTTCCHH---------HHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChh---------HHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3445566776533 2344555532235689999999999999999999988875
No 56
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=42.62 E-value=51 Score=25.18 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=30.6
Q ss_pred ccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 239 PFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 239 ~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
+.++..++ ..|.+..+|.+..++..+.+-|.+++|++
T Consensus 40 ~~iL~~l~--~~~~~~~ela~~l~~s~~tvs~~l~~Le~ 76 (146)
T 2gxg_A 40 FLVLRATS--DGPKTMAYLANRYFVTQSAITASVDKLEE 76 (146)
T ss_dssp HHHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHh--cCCcCHHHHHHHhCCCchhHHHHHHHHHH
Confidence 34555554 66789999999999999999999999986
No 57
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=42.17 E-value=25 Score=26.95 Aligned_cols=61 Identities=13% Similarity=0.041 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhCCCCCC----------CccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 122 ~~ef~~~~~vL~~lgyid~~----------~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
.+...+.++-|.+.|||... -.+|.+|+-...-.. -..+-+...++.+++++|+..+...+
T Consensus 66 ~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~l 136 (146)
T 2fbh_A 66 GPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADIE----AIAASVRNDVLTGIDESEQALCQQVL 136 (146)
T ss_dssp HHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHHH----HHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 35677889999999999541 148999987765431 12233455577888888887766544
No 58
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=41.61 E-value=20 Score=28.44 Aligned_cols=61 Identities=13% Similarity=0.088 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhCCCCC-----C-----CccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 122 RDELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 122 ~~ef~~~~~vL~~lgyid~-----~-----~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
.+...++++-|.+.|||.. | -.+|.+|+-+..-.. + ...-+...+|.+++++|+..+...+
T Consensus 78 ~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 148 (159)
T 3s2w_A 78 KGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPDMK--K--IASEWGEILFSSFDDRQRREITNSL 148 (159)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHHHH--H--HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHHHH--H--HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4578889999999999953 1 148999998775431 1 1222334466778888888766554
No 59
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=41.59 E-value=32 Score=26.74 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=29.8
Q ss_pred ccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 239 PFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 239 ~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
+.++..++.--.|.+..+|.+...+..+++-|.+.||++
T Consensus 42 ~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 80 (150)
T 3fm5_A 42 YSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEE 80 (150)
T ss_dssp HHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 344444443223569999999999999999999999875
No 60
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=41.45 E-value=25 Score=27.11 Aligned_cols=38 Identities=13% Similarity=-0.062 Sum_probs=31.3
Q ss_pred ccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 239 PFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 239 ~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
+.++..++.. .|.+..+|.+..++..+++-|.+.+|++
T Consensus 40 ~~iL~~l~~~-~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 77 (143)
T 3oop_A 40 WSVLEGIEAN-EPISQKEIALWTKKDTPTVNRIVDVLLR 77 (143)
T ss_dssp HHHHHHHHHH-SSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 3555555544 7799999999999999999999999876
No 61
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=41.44 E-value=59 Score=23.35 Aligned_cols=60 Identities=13% Similarity=0.272 Sum_probs=40.5
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021133 56 KDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRD 115 (317)
Q Consensus 56 ~~~~i~~~~~~~~~~~~~~l~~~l~~~p~~~c~~~~~~~~~~~~~~l~~~~~~l~~~i~~ 115 (317)
..++-.+..|..+..+...|...+...--....-.+.-++-.++-.|+.+|..+-.+...
T Consensus 10 ~~Lk~~d~~f~~L~~eH~~LD~~I~~le~~~~~~~~l~~LKk~KL~LKDeI~~lL~~~~~ 69 (76)
T 1zhc_A 10 SVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSMIIEYRE 69 (76)
T ss_dssp HHSTTTSTTHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344556888899998888888877655444441125556667777778777777666554
No 62
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=40.84 E-value=22 Score=28.72 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=31.4
Q ss_pred ccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 239 PFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 239 ~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
+.++..++..-.|.+..+|.+..++..+.+-|.+.||++
T Consensus 56 ~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 94 (166)
T 3deu_A 56 WVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLED 94 (166)
T ss_dssp HHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 345555544445689999999999999999999999976
No 63
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=40.64 E-value=29 Score=27.41 Aligned_cols=61 Identities=15% Similarity=0.104 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhCCCCC-----C-----CccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 122 RDELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 122 ~~ef~~~~~vL~~lgyid~-----~-----~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
.....+.++-|++.|||.. | -.+|.+|+-..+-.. + ...-+...+|.+++++|+..+...+
T Consensus 80 ~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 150 (162)
T 3cjn_A 80 QSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRLW--P--HMRASHDRMFQGITPQERQAFLATL 150 (162)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHHHH--H--HHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4577889999999999954 1 248999987654321 1 2223445567788888887765543
No 64
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=39.64 E-value=31 Score=26.51 Aligned_cols=61 Identities=16% Similarity=0.188 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhCCCCC-----C-----CccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 122 RDELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 122 ~~ef~~~~~vL~~lgyid~-----~-----~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
.+...+.++-|.+.|||.. | -.+|.+|+-..+-.. + ..+-....++.+++++++..+...+
T Consensus 64 ~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 134 (146)
T 2gxg_A 64 QSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKGI--E--IYKKLANEVTGDLSEDEVILVLDKI 134 (146)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH--H--HHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3567888999999999953 1 148999988765421 1 1223344567788888887766544
No 65
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=39.57 E-value=39 Score=25.84 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=30.9
Q ss_pred ccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 239 PFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 239 ~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
+.++..++. ..|.+..+|.+..++..+.+-|.+++|++
T Consensus 36 ~~iL~~l~~-~~~~~~~~la~~l~~s~~tvs~~l~~L~~ 73 (145)
T 2a61_A 36 FDILQKIYF-EGPKRPGELSVLLGVAKSTVTGLVKRLEA 73 (145)
T ss_dssp HHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 345555544 46799999999999999999999999886
No 66
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=39.45 E-value=44 Score=25.56 Aligned_cols=54 Identities=11% Similarity=0.148 Sum_probs=37.1
Q ss_pred HHHHHHHHcCCCCChhhhhhccCcccHHHHHHHhh-CCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 215 KIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWS-KGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 215 ~i~~~~~~~~l~~~~~~~~~~~~~~~l~~vv~~Wa-~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
........+|+... .+.++..++... .|.+..+|.+..++..+++-|.+.||++
T Consensus 25 ~~~~~~~~~~lt~~---------q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 79 (127)
T 2frh_A 25 LKSLIKKEFSISFE---------EFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQ 79 (127)
T ss_dssp HHHHHHHTTCCCHH---------HHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHH---------HHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444555666432 234444444321 5689999999999999999999999986
No 67
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=39.41 E-value=18 Score=27.64 Aligned_cols=60 Identities=10% Similarity=0.065 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhCCCCC-----C-----CccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 123 DELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 123 ~ef~~~~~vL~~lgyid~-----~-----~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
+...+.++-|.+.|||.. | -.+|.+|+-..+-.. +. ..-....++.+++++++..+...+
T Consensus 62 ~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~~~--~~--~~~~~~~~~~~l~~~e~~~l~~~l 131 (139)
T 3bja_A 62 SNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQVD--VQ--YSDFLKENCGCFTKEEEGILEDLL 131 (139)
T ss_dssp TTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH--HH--HHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHHHH--HH--HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 356778899999999953 1 248999987765321 11 122334466788888888766544
No 68
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=38.73 E-value=21 Score=27.86 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhCCCCC------C------CccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 122 RDELKNRSRVLKKLGHINA------D------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 122 ~~ef~~~~~vL~~lgyid~------~------~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
.+...++++-|.+.|||.. . -.+|.+|+-+.+-..... +. .-.+..+|.+++++|+..+...+
T Consensus 69 ~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~~~~~-~~-~~~~~~~~~~l~~~e~~~l~~~l 143 (154)
T 2qww_A 69 GSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRSTANA-FM-YKAMMKVFENLTENEIEELIRLN 143 (154)
T ss_dssp HHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHHHSCH-HH-HHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHHHHhhH-HH-HHHHHHHHhcCCHHHHHHHHHHH
Confidence 3567889999999999975 1 148999987655433221 11 12334455678888887766544
No 69
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=38.32 E-value=30 Score=26.36 Aligned_cols=61 Identities=10% Similarity=-0.043 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhCCCCC-----C-----CccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 122 RDELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 122 ~~ef~~~~~vL~~lgyid~-----~-----~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
.+...+.++-|.+.|||.. | -.+|.+|+-..+-.. + ..+-+...++.+++++++..+...+
T Consensus 64 ~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 134 (141)
T 3bro_A 64 SSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETIIL--S--YMDSDQSQMTSGLNKEEVVFLEKIL 134 (141)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHHH--H--HHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3567888999999999953 1 138999987665432 1 2334455677889998887765543
No 70
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=38.32 E-value=38 Score=25.22 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=29.0
Q ss_pred HHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 243 DVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 243 ~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
.++..+..|.|..+|.+..++...++-||++|..+
T Consensus 25 ~i~~~~~~g~s~~~ia~~lgis~~Tv~~w~~~~~~ 59 (128)
T 1pdn_C 25 KIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQE 59 (128)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 44555678999999999999999999999988654
No 71
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=37.26 E-value=46 Score=25.86 Aligned_cols=38 Identities=13% Similarity=0.241 Sum_probs=30.9
Q ss_pred ccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 239 PFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 239 ~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
+.++..++. ..|.+..+|.+..++..+++-|.+.||++
T Consensus 44 ~~iL~~l~~-~~~~~~~eLa~~l~~~~~~vs~~l~~L~~ 81 (149)
T 4hbl_A 44 YLVMLTLWE-ENPQTLNSIGRHLDLSSNTLTPMLKRLEQ 81 (149)
T ss_dssp HHHHHHHHH-SSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 355555544 36789999999999999999999999976
No 72
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=37.09 E-value=1.1e+02 Score=23.24 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=30.5
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 240 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 240 ~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
.++..++....|.+..+|.+..++..+.+-|.+++|++
T Consensus 39 ~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~ 76 (147)
T 2hr3_A 39 VVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELER 76 (147)
T ss_dssp HHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 44444444345789999999999999999999999986
No 73
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=36.96 E-value=76 Score=28.81 Aligned_cols=149 Identities=11% Similarity=0.066 Sum_probs=87.2
Q ss_pred CCCCCC--ccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhcccccCCCccccccHHHHHHHHHHHHHHH
Q 021133 137 HINADG--VVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESAR 214 (317)
Q Consensus 137 yid~~~--~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~v~e~~~~~~~~~~~~l~~~~~~l~~~a~ 214 (317)
-+++++ .+|.-||+|+.-|-.. -..+.+.+++=.+++..++-.++|.--- .++.+ +..+=..
T Consensus 2 ~~~~~~~l~~t~lG~iaS~yYi~~--~T~~~f~~~l~~~~~~~~lL~ils~a~E---f~~i~-vR~~E~~---------- 65 (328)
T 3im1_A 2 AMEATEIISTLSNGLIASHYGVSF--FTIQSFVSSLSNTSTLKNMLYVLSTAVE---FESVP-LRKGDRA---------- 65 (328)
T ss_dssp --CCCCCCTTSSSCBCCCCCCCCH--HHHHHHHHHCCTTCCHHHHHHHHHTCGG---GGGSC-CCTTHHH----------
T ss_pred CccCCCCccCCchhHHHHHHCCCH--HHHHHHHHHhcccCCHHHHHHHhccHHH---HHhcc-cCcchHH----------
Confidence 344443 4889999999988633 3445555566677888887777664321 01111 1110011
Q ss_pred HHHHHHHHcCCCCC-hhhhhhccCcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHhhcCCHH
Q 021133 215 KIAEIQNECKLEVN-VDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVN 293 (317)
Q Consensus 215 ~i~~~~~~~~l~~~-~~~~~~~~~~~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~ellrQl~~aa~~ig~~~ 293 (317)
.+.++..++.++.. ...+ +. ......-++++|-++.++.. -..||....+....-|++-+...+..-|...
T Consensus 66 ~l~~L~~~~~~~~~~~~~~-~~-~~~K~~lLLqa~isr~~l~~------~l~~D~~~V~~~a~rLl~al~di~~~~g~~~ 137 (328)
T 3im1_A 66 LLVKLSKRLPLRFPEHTSS-GS-VSFKVFLLLQAYFSRLELPV------DFQNDLKDILEKVVPLINVVVDILSANGYLN 137 (328)
T ss_dssp HHHHHHTTSSSCCCTTSCS-SS-HHHHHHHHHHHHHHTCCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHTTBTT
T ss_pred HHHHHHHhCCCcccccCCC-CC-HHHHHHHHHHHHHCCCCCCh------HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 11222233333321 1111 12 33455667899999988765 1378999999888888988888887778776
Q ss_pred HHHHHHHHHHhhcCCcc
Q 021133 294 LEKKFAAASESLRRGIM 310 (317)
Q Consensus 294 L~~k~~~a~~~I~RdIV 310 (317)
...+-+-...|..++.
T Consensus 138 -~~~~l~L~q~i~q~~w 153 (328)
T 3im1_A 138 -ATTAMDLAQMLIQGVW 153 (328)
T ss_dssp -HHHHHHHHHHHHHTSC
T ss_pred -HHHHHHHHHHHHhhcC
Confidence 6666666666655554
No 74
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=36.80 E-value=52 Score=25.20 Aligned_cols=37 Identities=5% Similarity=0.063 Sum_probs=29.5
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHH
Q 021133 240 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEF 278 (317)
Q Consensus 240 ~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~el 278 (317)
.++..+ |..|.++.+|.+..++..+++-|.+.+|++-
T Consensus 41 ~iL~~l--~~~~~~~~~la~~l~~~~~tvs~~l~~Le~~ 77 (144)
T 3f3x_A 41 SILKAT--SEEPRSMVYLANRYFVTQSAITAAVDKLEAK 77 (144)
T ss_dssp HHHHHH--HHSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHH--HHCCCCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 444444 4455599999999999999999999999873
No 75
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=36.62 E-value=54 Score=24.80 Aligned_cols=38 Identities=21% Similarity=0.178 Sum_probs=30.0
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHH
Q 021133 240 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEF 278 (317)
Q Consensus 240 ~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~el 278 (317)
.++..++. ..|.+..+|.+..++..+++-|.+++|++-
T Consensus 38 ~iL~~l~~-~~~~~~~~la~~l~~~~~tvs~~l~~L~~~ 75 (138)
T 1jgs_A 38 KVLCSIRC-AACITPVELKKVLSVDLGALTRMLDRLVCK 75 (138)
T ss_dssp HHHHHHHH-HSSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHh-cCCCCHHHHHHHHCCChHHHHHHHHHHHHC
Confidence 34444432 357899999999999999999999999863
No 76
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=36.48 E-value=36 Score=25.54 Aligned_cols=43 Identities=14% Similarity=0.119 Sum_probs=37.2
Q ss_pred CcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHH
Q 021133 237 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFL 279 (317)
Q Consensus 237 ~~~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~ell 279 (317)
+.+.-.+|+..++.|.+..||.+..+++++++=..+.|+.+-|
T Consensus 35 Lt~re~~Vl~l~~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 35 LSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 7788888888899999999999999999999988777765544
No 77
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=36.06 E-value=28 Score=27.08 Aligned_cols=61 Identities=8% Similarity=-0.057 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhCCCCCC----------CccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 122 ~~ef~~~~~vL~~lgyid~~----------~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
.+...+.++-|.+.|||... -.+|.+|+-..+-.. +. .+-+...++.+++++++..+...+
T Consensus 65 ~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~~--~~~~~~~~~~~l~~~e~~~l~~~l 135 (155)
T 1s3j_A 65 PSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEVL--AG--RKAIMARYLSFLTEEEMLQAAHIT 135 (155)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHHH--HH--HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHHHHH--HH--HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45678899999999999541 148999987665321 11 122334456678888877666554
No 78
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=36.06 E-value=29 Score=27.23 Aligned_cols=61 Identities=16% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCCCC----------CccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 122 ~~ef~~~~~vL~~lgyid~~----------~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
.+...+.++-|.+.|||... -.+|.+|+-..+-. .-...-....++++++++|+..+...+
T Consensus 72 ~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~----~~~~~~~~~~~~~~l~~ee~~~l~~~L 142 (154)
T 2eth_A 72 KSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEI----LSNFESLLKSVLEKFSEEDFKVVSEGF 142 (154)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHH----HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHHHH----HHHHHHHHHHHHhcCCHHHHHHHHHHH
No 79
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=35.95 E-value=32 Score=26.17 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhCCCCCC----------CccchhhHHhh-hhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAAC-LIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 122 ~~ef~~~~~vL~~lgyid~~----------~~vt~kGrvA~-eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
.+...+.++-|.+.|||... -.+|.+|+-.. .-. .+.+ +-+...++.+++++++..+...+
T Consensus 59 ~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~~~~~--~~~~--~~~~~~~~~~l~~~e~~~l~~~l 130 (142)
T 3bdd_A 59 RAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREALITNP--SAHH--QAIKTSMNQILTVEESEQFLATL 130 (142)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHTTSC--CHHH--HHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHH--HHHH--HHHHHHHHhcCCHHHHHHHHHHH
Confidence 35678889999999999541 14899998776 332 2221 22334455678888877665544
No 80
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=35.85 E-value=1.4e+02 Score=22.72 Aligned_cols=37 Identities=8% Similarity=0.062 Sum_probs=30.2
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 240 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 240 ~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
.++..++. ..|.+..+|.+..++..+++-|.+++|++
T Consensus 46 ~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 82 (150)
T 2rdp_A 46 VALQWLLE-EGDLTVGELSNKMYLACSTTTDLVDRMER 82 (150)
T ss_dssp HHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 44444443 46799999999999999999999999876
No 81
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=35.82 E-value=66 Score=24.44 Aligned_cols=38 Identities=13% Similarity=0.106 Sum_probs=29.3
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 240 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 240 ~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
.++..++.=..|.+..+|.+..++..+++-|.+++|++
T Consensus 41 ~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~ 78 (146)
T 2fbh_A 41 LVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLES 78 (146)
T ss_dssp HHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 44444422134689999999999999999999999876
No 82
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=35.47 E-value=1.2e+02 Score=23.96 Aligned_cols=38 Identities=11% Similarity=0.020 Sum_probs=30.4
Q ss_pred ccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 239 PFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 239 ~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
+.++..++. ..|.+..+|.+..++..+++-|.+.+|++
T Consensus 48 ~~iL~~L~~-~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 85 (168)
T 2nyx_A 48 FRTLVILSN-HGPINLATLATLLGVQPSATGRMVDRLVG 85 (168)
T ss_dssp HHHHHHHHH-HCSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344554544 35799999999999999999999999875
No 83
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=35.25 E-value=79 Score=23.73 Aligned_cols=37 Identities=11% Similarity=0.188 Sum_probs=29.5
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 240 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 240 ~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
.++..++. ..|.+..+|.+..++..+++-|.+++|++
T Consensus 37 ~iL~~l~~-~~~~~~~ela~~l~~~~~tvs~~l~~L~~ 73 (139)
T 3bja_A 37 GVIQVLAK-SGKVSMSKLIENMGCVPSNMTTMIQRMKR 73 (139)
T ss_dssp HHHHHHHH-SCSEEHHHHHHHCSSCCTTHHHHHHHHHH
T ss_pred HHHHHHHH-cCCcCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 44444432 34589999999999999999999999987
No 84
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=35.17 E-value=40 Score=26.45 Aligned_cols=61 Identities=13% Similarity=0.098 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhCCCCCC----------CccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 122 ~~ef~~~~~vL~~lgyid~~----------~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
.....++++-|++.|||... -.+|.+|+-...-.. +. ..-+...++.+++++|+..+...+
T Consensus 77 ~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~~--~~~~~~~~~~~l~~~e~~~l~~~l 147 (162)
T 2fa5_A 77 KVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETVA--PL--VNEMEQRLMSVFSAEEQQTLERLI 147 (162)
T ss_dssp HHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHHHH--HH--HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHHHH--HH--HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 35678899999999999652 248999987654321 11 122334455678888877665443
No 85
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=35.11 E-value=45 Score=25.07 Aligned_cols=40 Identities=18% Similarity=0.137 Sum_probs=32.1
Q ss_pred CcccHHHHHHHhhCCCCHHHHHhhcC----CCcchHHHHHHHHHH
Q 021133 237 VRPFLMDVIYCWSKGATFAEVIQMTD----IFEGSIIRSARRLDE 277 (317)
Q Consensus 237 ~~~~l~~vv~~Wa~G~~f~ei~~~t~----l~EGdiVR~irRl~e 277 (317)
..+..|.+++. ..|.+-.||.+... +..+++-|.+.||++
T Consensus 36 ~e~~VL~~L~~-~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~ 79 (99)
T 2k4b_A 36 AELIVMRVIWS-LGEARVDEIYAQIPQELEWSLATVKTLLGRLVK 79 (99)
T ss_dssp SCSHHHHHHHH-HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHH
Confidence 45678887765 55689999998875 567999999999986
No 86
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=35.03 E-value=55 Score=24.94 Aligned_cols=37 Identities=14% Similarity=0.279 Sum_probs=29.1
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 240 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 240 ~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
.++..++. ..|.+..+|.+..++..+++-|.+.+|++
T Consensus 33 ~iL~~l~~-~~~~t~~~la~~l~~s~~~vs~~l~~Le~ 69 (144)
T 1lj9_A 33 LYLVRVCE-NPGIIQEKIAELIKVDRTTAARAIKRLEE 69 (144)
T ss_dssp HHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-CcCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 34444433 34589999999999999999999999986
No 87
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=34.67 E-value=34 Score=24.93 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=27.0
Q ss_pred HHHHHhh-C-CCCHHHHHhhcCCCcchHHHHHHHHH
Q 021133 243 DVIYCWS-K-GATFAEVIQMTDIFEGSIIRSARRLD 276 (317)
Q Consensus 243 ~vv~~Wa-~-G~~f~ei~~~t~l~EGdiVR~irRl~ 276 (317)
.+|..+. . |.|..+|+...++..+++-||+++..
T Consensus 13 ~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 13 DAVALYENSDGASLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp HHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHHh
Confidence 3444443 4 89999999999999999999998754
No 88
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=34.67 E-value=39 Score=25.58 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhCCCCCC----------CccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 122 ~~ef~~~~~vL~~lgyid~~----------~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
.+...+.++-|.+.|||... -.+|.+|+-...-.. +. ..-....++.+++++++..+...+
T Consensus 57 ~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~~~--~~--~~~~~~~~~~~l~~~e~~~l~~~l 127 (138)
T 3bpv_A 57 KGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLIL--KV--EERWEDLLFRDFTEDERKLFRKMC 127 (138)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHHHH--HH--HHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHHHHH--HH--HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 35678889999999999641 248999987654321 11 122345567788888877766544
No 89
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=34.37 E-value=71 Score=24.86 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=42.9
Q ss_pred cHHHHHHHh-hCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHhhcC
Q 021133 240 FLMDVIYCW-SKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVG 290 (317)
Q Consensus 240 ~l~~vv~~W-a~G~~f~ei~~~t~l~EGdiVR~irRl~ellrQl~~aa~~ig 290 (317)
....+.+.- ..|.|=.++|+..++..|-|-++++||..+=+-+.+++...-
T Consensus 48 kII~ALrdyLV~G~srkeaCe~~gV~~syfS~~L~rL~~v~~~V~~l~~fY~ 99 (111)
T 3m8j_A 48 RVILAMKDYLVSGHSRKDVCEKYQMNNGYFSTTLGRLTRLNVLVARLAPYYT 99 (111)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHcCCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444444 899999999999999999999999999999999999887653
No 90
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=34.32 E-value=1.5e+02 Score=22.63 Aligned_cols=50 Identities=10% Similarity=0.304 Sum_probs=37.5
Q ss_pred HHHHHHcCCCCChhhhhhccCcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 217 AEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 217 ~~~~~~~~l~~~~~~~~~~~~~~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
.....++|+..+ .+.++..+ =..|.+..+|.+..++..+++-|.+.||++
T Consensus 28 ~~~~~~~~lt~~---------q~~iL~~l--~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~ 77 (151)
T 3kp7_A 28 KDLQTEYGISAE---------QSHVLNML--SIEALTVGQITEKQGVNKAAVSRRVKKLLN 77 (151)
T ss_dssp HHHHHHHTCCHH---------HHHHHHHH--HHSCBCHHHHHHHHCSCSSHHHHHHHHHHH
T ss_pred HHHhhcCCCCHH---------HHHHHHHH--HcCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344455677432 24555556 357899999999999999999999999876
No 91
>2whn_A PILC, pilus assembly protein PILC; transport, transmembrane, pilus biogenesis, protein transpor; 2.05A {Thermus thermophilus}
Probab=34.30 E-value=71 Score=23.76 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=26.4
Q ss_pred ccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHH
Q 021133 239 PFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSAR 273 (317)
Q Consensus 239 ~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~ir 273 (317)
..+-.+...=.+|.+|++.++.++.++..++..++
T Consensus 50 ~~~~~i~~~l~~G~sls~al~~~~~fp~~~~~~i~ 84 (116)
T 2whn_A 50 EILKQVRTDVEGGMAFSEALSKHKIFSRLYVNLVR 84 (116)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHTSTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcHHHHHHHCCCCCHHHHHHHH
Confidence 34555556668999999999999888877666654
No 92
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=34.29 E-value=19 Score=27.85 Aligned_cols=61 Identities=21% Similarity=0.141 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhCCCCCC----------CccchhhHHhhhhcCCChHHHHHHHhhCCCC-CCCHHHHHHHhhhc
Q 021133 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFN-DLDHHQVAALASCF 186 (317)
Q Consensus 122 ~~ef~~~~~vL~~lgyid~~----------~~vt~kGrvA~eI~s~~eLlltEll~~g~f~-~L~p~elaAllS~~ 186 (317)
.+...+.++-|.+.|||... -.+|.+|+-..+-.. + ..+-....+|. +++++++..+...+
T Consensus 64 ~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~--~~~~~~~~~~~~~l~~~e~~~l~~~l 135 (147)
T 2hr3_A 64 SSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGNR--A--KREEWLVRAMHACLDESERALLAAAG 135 (147)
T ss_dssp HHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHHH--H--HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHHHHH--H--HHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 45678899999999999541 249999987654321 1 11222334455 68888887766544
No 93
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=33.65 E-value=85 Score=24.15 Aligned_cols=39 Identities=13% Similarity=0.213 Sum_probs=30.7
Q ss_pred ccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHH
Q 021133 239 PFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEF 278 (317)
Q Consensus 239 ~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~el 278 (317)
+.++..++. ..|.+..+|.+..++..+++-|.+++|++-
T Consensus 40 ~~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le~~ 78 (155)
T 1s3j_A 40 LFVLASLKK-HGSLKVSEIAERMEVKPSAVTLMADRLEQK 78 (155)
T ss_dssp HHHHHHHHH-HSEEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 345555543 356899999999999999999999998763
No 94
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=33.52 E-value=97 Score=24.09 Aligned_cols=38 Identities=21% Similarity=0.213 Sum_probs=30.7
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHH
Q 021133 240 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEF 278 (317)
Q Consensus 240 ~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~el 278 (317)
.++..++. ..|.+..+|.+..++..+.+-|.+++|++-
T Consensus 53 ~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~~ 90 (162)
T 2fa5_A 53 RVITILAL-YPGSSASEVSDRTAMDKVAVSRAVARLLER 90 (162)
T ss_dssp HHHHHHHH-STTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 45555544 457999999999999999999999999863
No 95
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=33.17 E-value=48 Score=25.94 Aligned_cols=36 Identities=11% Similarity=0.163 Sum_probs=29.8
Q ss_pred HHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 242 MDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 242 ~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
..++..+..|.|..+|.+..++...+|-||++|-.+
T Consensus 39 ~~iv~~~~~G~s~~~iA~~lgis~~TV~rw~~~~~~ 74 (149)
T 1k78_A 39 QRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYE 74 (149)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 455666678999999999999999999999988654
No 96
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=33.12 E-value=58 Score=25.21 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=29.2
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 240 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 240 ~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
.++..++. ..|.+..+|.+..++..+++-|.+.+|++
T Consensus 45 ~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 81 (154)
T 2qww_A 45 AMINVIYS-TPGISVADLTKRLIITGSSAAANVDGLIS 81 (154)
T ss_dssp HHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444432 34589999999999999999999999887
No 97
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=33.09 E-value=1.1e+02 Score=20.38 Aligned_cols=40 Identities=25% Similarity=0.381 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHHHHHhC
Q 021133 97 QRKAEVNHEIQQLKSKMRDSQIQ--KFRDELKNRSRVLKKLG 136 (317)
Q Consensus 97 ~~~~~l~~~~~~l~~~i~~~~~~--~~~~ef~~~~~vL~~lg 136 (317)
++-..|+.|-..|++++++..+. -+-.|=..|+.||++++
T Consensus 10 ~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 10 KQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 34445666666777777762221 13356678889998875
No 98
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=33.00 E-value=23 Score=24.55 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=19.7
Q ss_pred CcccHHHHHHHhhCC-CCHHHHHh
Q 021133 237 VRPFLMDVIYCWSKG-ATFAEVIQ 259 (317)
Q Consensus 237 ~~~~l~~vv~~Wa~G-~~f~ei~~ 259 (317)
+++.+...+..|++| .|++++.+
T Consensus 28 pd~~~l~~~erwv~GEis~~e~i~ 51 (61)
T 3shg_B 28 PDPQVVAQMERVVVGELETSDVIK 51 (61)
T ss_dssp CCHHHHHHHHHHHHTSSCHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHH
Confidence 567899999999999 78888764
No 99
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=32.89 E-value=75 Score=24.82 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=30.3
Q ss_pred ccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 239 PFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 239 ~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
+.++..++. ..|.+..+|.+..++..+++-|.+.+|++
T Consensus 53 ~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 90 (159)
T 3s2w_A 53 FPFLMRLYR-EDGINQESLSDYLKIDKGTTARAIQKLVD 90 (159)
T ss_dssp HHHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444433 35689999999999999999999999876
No 100
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=32.66 E-value=31 Score=22.18 Aligned_cols=32 Identities=13% Similarity=0.013 Sum_probs=26.0
Q ss_pred HHHHHhhCCCCHHHHHhhcCCCcchHHHHHHH
Q 021133 243 DVIYCWSKGATFAEVIQMTDIFEGSIIRSARR 274 (317)
Q Consensus 243 ~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irR 274 (317)
.+...+..|.|..+|.+..+++..++=|++++
T Consensus 23 ~i~~l~~~g~s~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 23 VAHELAKMGYTVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 33344689999999999999999998887754
No 101
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=32.41 E-value=33 Score=26.54 Aligned_cols=61 Identities=10% Similarity=0.131 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhCCCCC-----C-----CccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 122 RDELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 122 ~~ef~~~~~vL~~lgyid~-----~-----~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
.+...+.++-|.+.|||.. | -.+|.+|+-...-.. +.+ .-....+|.+++++|+..+...+
T Consensus 70 ~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~~~--~~~~~~~~~~l~~~e~~~l~~~l 140 (150)
T 2rdp_A 70 CSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEVI--EKR--QRDLANVLESFSDEEIVVFERCL 140 (150)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHHH--HHH--HHHHHHHGGGSCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHHHH--HHH--HHHHHHHHHcCCHHHHHHHHHHH
Confidence 3567888999999999954 1 248999987654321 111 12334456678888877765544
No 102
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=32.30 E-value=36 Score=26.08 Aligned_cols=34 Identities=6% Similarity=-0.138 Sum_probs=28.6
Q ss_pred HHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHH
Q 021133 242 MDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRL 275 (317)
Q Consensus 242 ~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl 275 (317)
..++..+..|.|..+|.+..+++..++-|+++|-
T Consensus 13 ~~i~~~~~~G~s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 13 AQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSG
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHcc
Confidence 4556667899999999999999999999999873
No 103
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=31.94 E-value=81 Score=23.92 Aligned_cols=29 Identities=10% Similarity=0.243 Sum_probs=25.9
Q ss_pred CCCCHHHHHhhcCCCcchHHHHHHHHHHH
Q 021133 250 KGATFAEVIQMTDIFEGSIIRSARRLDEF 278 (317)
Q Consensus 250 ~G~~f~ei~~~t~l~EGdiVR~irRl~el 278 (317)
.|.+..+|.+..++..+++-|.+++|++-
T Consensus 50 ~~~~~~ela~~l~~~~~tvs~~l~~L~~~ 78 (142)
T 2bv6_A 50 SPVNVKKVVTELALDTGTVSPLLKRMEQV 78 (142)
T ss_dssp SEEEHHHHHHHTTCCTTTHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 45899999999999999999999998863
No 104
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=31.73 E-value=79 Score=25.37 Aligned_cols=46 Identities=17% Similarity=0.147 Sum_probs=36.0
Q ss_pred CcccHHHHHHH-hhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHH
Q 021133 237 VRPFLMDVIYC-WSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQL 282 (317)
Q Consensus 237 ~~~~l~~vv~~-Wa~G~~f~ei~~~t~l~EGdiVR~irRl~ellrQl 282 (317)
+++.--.++.. ...|.|..||.+..++++|++=..+.|.-.-|++.
T Consensus 141 L~~~~r~vl~l~~~~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 141 LPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp SCHHHHHHHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 34444455544 57999999999999999999998888888777753
No 105
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=30.82 E-value=65 Score=24.26 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=29.6
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 240 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 240 ~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
.++..++. ..|.+..+|.+..++..+++-|.+++|++
T Consensus 33 ~iL~~l~~-~~~~~~~ela~~l~~s~~tvs~~l~~L~~ 69 (138)
T 3bpv_A 33 ACLLRIHR-EPGIKQDELATFFHVDKGTIARTLRRLEE 69 (138)
T ss_dssp HHHHHHHH-STTCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444433 36689999999999999999999999886
No 106
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=30.53 E-value=40 Score=26.07 Aligned_cols=61 Identities=10% Similarity=0.005 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhCCCCC-----C-----CccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 122 RDELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 122 ~~ef~~~~~vL~~lgyid~-----~-----~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
.+...+.++-|.+.|||.. | -.+|.+|+-..+-.. +. ..-....++.+++++++..+...+
T Consensus 68 ~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~~--~~~~~~~~~~~l~~~e~~~l~~~l 138 (152)
T 3bj6_A 68 RQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITAIR--AD--EMAKLALFSEGFSSVELTAYHKVQ 138 (152)
T ss_dssp HHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHHHH--HH--HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHHHHH--HH--HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4567889999999999954 1 148999987654321 11 123334456678888777766544
No 107
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=30.45 E-value=62 Score=25.12 Aligned_cols=30 Identities=7% Similarity=0.185 Sum_probs=26.6
Q ss_pred hh-CCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 248 WS-KGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 248 Wa-~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
|. .|.+..+|.+..++..+++-|.+++|++
T Consensus 53 ~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~ 83 (155)
T 3cdh_A 53 VDNDAMMITRLAKLSLMEQSRMTRIVDQMDA 83 (155)
T ss_dssp SSCSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44 4689999999999999999999999876
No 108
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=30.37 E-value=1.1e+02 Score=24.05 Aligned_cols=38 Identities=13% Similarity=-0.015 Sum_probs=30.5
Q ss_pred ccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 239 PFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 239 ~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
+.++..++. ..|.+..+|.+..++..+++-|.+.||++
T Consensus 49 ~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 86 (162)
T 3k0l_A 49 FTALSVLAA-KPNLSNAKLAERSFIKPQSANKILQDLLA 86 (162)
T ss_dssp HHHHHHHHH-CTTCCHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345554443 35799999999999999999999999875
No 109
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=29.83 E-value=65 Score=23.01 Aligned_cols=45 Identities=20% Similarity=0.093 Sum_probs=34.4
Q ss_pred CcccHHHHHHHh-h----CCCCHHHHHhhcCCCcchHHHHHHHHHHHHHH
Q 021133 237 VRPFLMDVIYCW-S----KGATFAEVIQMTDIFEGSIIRSARRLDEFLNQ 281 (317)
Q Consensus 237 ~~~~l~~vv~~W-a----~G~~f~ei~~~t~l~EGdiVR~irRl~ellrQ 281 (317)
+++.--.|+..- . .|.|+.||-+..++++|.+=..+.|...-|++
T Consensus 19 L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 19 LSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp SCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 455555555443 3 89999999999999999998888887776664
No 110
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=29.77 E-value=92 Score=24.53 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=29.0
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 240 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 240 ~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
.++..++..-.|.+-.+|.+..++..+++-|.+.||++
T Consensus 35 ~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~ 72 (151)
T 4aik_A 35 VTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEE 72 (151)
T ss_dssp HHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 34444444345577789999999999999999999875
No 111
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=29.75 E-value=27 Score=26.94 Aligned_cols=29 Identities=7% Similarity=0.145 Sum_probs=26.1
Q ss_pred hCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 249 SKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 249 a~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
..|.+..+|.+..++..+++-|.+.+|++
T Consensus 48 ~~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 76 (140)
T 3hsr_A 48 DEKLNIKKLGERVFLDSGTLTPLLKKLEK 76 (140)
T ss_dssp TCEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 35689999999999999999999999876
No 112
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=29.10 E-value=1.1e+02 Score=24.62 Aligned_cols=39 Identities=23% Similarity=0.101 Sum_probs=30.4
Q ss_pred ccHHHHHHHhhC--CCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 239 PFLMDVIYCWSK--GATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 239 ~~l~~vv~~Wa~--G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
+.++.+++.--. |.+..+|.+..++..+++-|.++||++
T Consensus 72 ~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 112 (181)
T 2fbk_A 72 WDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLE 112 (181)
T ss_dssp HHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445555544322 389999999999999999999999886
No 113
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=29.04 E-value=25 Score=28.65 Aligned_cols=59 Identities=17% Similarity=0.058 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhCCCCCC----------CccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhh
Q 021133 123 DELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASC 185 (317)
Q Consensus 123 ~ef~~~~~vL~~lgyid~~----------~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~ 185 (317)
+...++++-|++.|||... -.+|.+|+-..+-.. + ...-....+|.+++++|+..+...
T Consensus 101 ~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~ 169 (181)
T 2fbk_A 101 PSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTHLL--P--AHLATTQRVLAPLSAQEQRTLEEL 169 (181)
T ss_dssp GGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHHHH--H--HHHHHHHHHHTTSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3556788999999999642 248999988765321 1 111223345566777776665544
No 114
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=28.86 E-value=83 Score=24.15 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=29.3
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 240 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 240 ~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
.++..++. ..|.+..+|.+..++..+++-|.+++|++
T Consensus 44 ~iL~~l~~-~~~~t~~ela~~l~~~~~~vs~~l~~Le~ 80 (152)
T 3bj6_A 44 AILEGLSL-TPGATAPQLGAALQMKRQYISRILQEVQR 80 (152)
T ss_dssp HHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444433 34689999999999999999999999876
No 115
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=28.75 E-value=34 Score=27.43 Aligned_cols=61 Identities=11% Similarity=0.055 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhCCCCC-----C-----CccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhc
Q 021133 122 RDELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 122 ~~ef~~~~~vL~~lgyid~-----~-----~~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~ 186 (317)
.....++++-|++.|||.. | -.+|.+|+-..+-.. +. . .-....+|.+++++++..+...+
T Consensus 73 ~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~~--~~-~-~~~~~~~~~~l~~ee~~~l~~~L 143 (168)
T 2nyx_A 73 PSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQVT--EH-R-RTEIARIVEQMAPAERHGLVRAL 143 (168)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHH--HH-H-HHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHH--HH-H-HHHHHHHHHhCCHHHHHHHHHHH
Confidence 4567889999999999954 1 249999987654321 11 1 12224455678888877665544
No 116
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=28.62 E-value=70 Score=25.14 Aligned_cols=51 Identities=12% Similarity=0.115 Sum_probs=37.3
Q ss_pred HHHHHHcCCCCChhhhhhccCcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 217 AEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 217 ~~~~~~~~l~~~~~~~~~~~~~~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
.....++|+... .+.++..++. ..|.+..+|.+..++..+++-|.+.||++
T Consensus 43 ~~~~~~~glt~~---------q~~vL~~l~~-~~~~t~~eLa~~l~~~~~~vs~~l~~Le~ 93 (161)
T 3e6m_A 43 NQALASEKLPTP---------KLRLLSSLSA-YGELTVGQLATLGVMEQSTTSRTVDQLVD 93 (161)
T ss_dssp HHHHHHHTCCHH---------HHHHHHHHHH-HSEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHH---------HHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344456777432 2345555544 36899999999999999999999999876
No 117
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=28.15 E-value=1e+02 Score=25.49 Aligned_cols=46 Identities=13% Similarity=0.034 Sum_probs=35.9
Q ss_pred CcccHHHHHHH-hhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHH
Q 021133 237 VRPFLMDVIYC-WSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQL 282 (317)
Q Consensus 237 ~~~~l~~vv~~-Wa~G~~f~ei~~~t~l~EGdiVR~irRl~ellrQl 282 (317)
+++.--.|+.. +..|.|+.||.+..++++|.+=+.+.|...-|++.
T Consensus 188 L~~~~r~vl~l~~~~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEELPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 34444444444 47999999999999999999988888888877764
No 118
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=27.95 E-value=1.4e+02 Score=23.05 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=29.9
Q ss_pred cHHHHHHHhh-CCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 240 FLMDVIYCWS-KGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 240 ~l~~vv~~Wa-~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
.++..++ |. .|.+..+|.+..++..+++-|.+.+|++
T Consensus 51 ~iL~~L~-~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~ 88 (160)
T 3boq_A 51 DAMAQLA-RNPDGLSMGKLSGALKVTNGNVSGLVNRLIK 88 (160)
T ss_dssp HHHHHHH-HCTTCEEHHHHHHHCSSCCSCHHHHHHHHHH
T ss_pred HHHHHHH-HcCCCCCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 4444442 33 5799999999999999999999999886
No 119
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=27.60 E-value=76 Score=23.73 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=30.6
Q ss_pred CcccHHHHHHHhhCCCCHHHHHhhc-CCCcchHHHHHHHHHH
Q 021133 237 VRPFLMDVIYCWSKGATFAEVIQMT-DIFEGSIIRSARRLDE 277 (317)
Q Consensus 237 ~~~~l~~vv~~Wa~G~~f~ei~~~t-~l~EGdiVR~irRl~e 277 (317)
+.+.++..+ +..+.++.+|.+.. ++..+.+-+.+++|++
T Consensus 23 ~~~~IL~~L--~~~~~~~~eLa~~l~~is~~tvs~~L~~Le~ 62 (112)
T 1z7u_A 23 WKLSLMDEL--FQGTKRNGELMRALDGITQRVLTDRLREMEK 62 (112)
T ss_dssp THHHHHHHH--HHSCBCHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHH--HhCCCCHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 333444444 34679999999999 9999999999999876
No 120
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=27.58 E-value=73 Score=24.30 Aligned_cols=38 Identities=8% Similarity=0.163 Sum_probs=29.9
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHH
Q 021133 240 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEF 278 (317)
Q Consensus 240 ~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~el 278 (317)
.++..++. ..|.+..+|.+..++..+++-|.+++|++-
T Consensus 44 ~iL~~l~~-~~~~~~~~la~~l~~~~~tvs~~l~~L~~~ 81 (147)
T 1z91_A 44 LALLLLWE-HETLTVKKMGEQLYLDSGTLTPMLKRMEQQ 81 (147)
T ss_dssp HHHHHHHH-HSEEEHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-CCCCCHHHHHHHHCCCcCcHHHHHHHHHHC
Confidence 34443333 356899999999999999999999999874
No 121
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=27.35 E-value=56 Score=23.54 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=25.7
Q ss_pred CCCHHHHHhhcCCCcch-HHHHHHHHHHH
Q 021133 251 GATFAEVIQMTDIFEGS-IIRSARRLDEF 278 (317)
Q Consensus 251 G~~f~ei~~~t~l~EGd-iVR~irRl~el 278 (317)
|.++.+|.+..++..++ +-|.+++|++-
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~ 58 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRA 58 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHT
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHC
Confidence 59999999999999999 99999998864
No 122
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=27.27 E-value=45 Score=22.03 Aligned_cols=35 Identities=6% Similarity=0.053 Sum_probs=29.5
Q ss_pred hhCCCC----HHHHHhhcCCCcchHHHHHHHHHHHHHHH
Q 021133 248 WSKGAT----FAEVIQMTDIFEGSIIRSARRLDEFLNQL 282 (317)
Q Consensus 248 Wa~G~~----f~ei~~~t~l~EGdiVR~irRl~ellrQl 282 (317)
...|.| ..+|+..-++..+.+=+|+++..++-..|
T Consensus 18 ~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~~~~~~~~ 56 (59)
T 2glo_A 18 YRNDNDCKGNQRATARKYNIHRRQIQKWLQCESNLRSSV 56 (59)
T ss_dssp HHHCTTTTTCHHHHHHHTTSCHHHHHHHHTTHHHHHHHH
T ss_pred HHcCCCcchHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 356888 99999999999999999999887776655
No 123
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=26.77 E-value=3.3e+02 Score=24.61 Aligned_cols=144 Identities=6% Similarity=-0.027 Sum_probs=67.1
Q ss_pred ccchhhHHhhhhcCCChHHHHHHHhhCCCCCCCHHHHHHHhhhcccccCCCccc-cccHHHHHHHHHHHHHHHHHHHHHH
Q 021133 143 VVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQI-NLRMELAKPLQQLQESARKIAEIQN 221 (317)
Q Consensus 143 ~vt~kGrvA~eI~s~~eLlltEll~~g~f~~L~p~elaAllS~~v~e~~~~~~~-~~~~~l~~~~~~l~~~a~~i~~~~~ 221 (317)
.+|.-||+|+.-|-..+ .++.++.++=.+++..++-.++|.---- ++.+ +-.+. ..+ .+++ .
T Consensus 14 ~~t~lGriaS~yYi~~~--T~~~f~~~l~~~~~~~~lL~ils~a~EF---~~i~vR~~E~--~~l---~~L~-------~ 76 (339)
T 2q0z_X 14 APLNLGMIAAYYYINYT--TIELFSMSLNAKTKVRGLIEIISNAAEY---ENIPIRHHED--NLL---RQLA-------Q 76 (339)
T ss_dssp -------------------------------CCHHHHHHHHHTSGGG---TTCCCCTTCH--HHH---HHHH-------H
T ss_pred ccCcHHHHHHHHCCCHH--HHHHHHHHhcccCCHHHHHHHHhchHHH---hcCCCCcchH--HHH---HHHH-------H
Confidence 47899999999886333 2344445555567777776665543211 1111 11111 111 1222 2
Q ss_pred HcCCCCChhhhhhccCcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 021133 222 ECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAA 301 (317)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~ellrQl~~aa~~ig~~~L~~k~~~a 301 (317)
++.++++..+| +. ......-++++|-++.++. + +. .||....+....-|++-+..++..-|.......+-+-
T Consensus 77 ~~~~~~~~~~~-~~-~~~K~~lLLqa~isr~~l~-~-~l----~~D~~~V~~~a~RLl~al~di~~~~g~~~~~~~~l~L 148 (339)
T 2q0z_X 77 KVPHKLNNPKF-ND-PHVKTNLLLQAHLSRMQLS-A-EL----QSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMEL 148 (339)
T ss_dssp HSSSCCSSCCT-TC-HHHHHHHHHHHHHTTCCCC-H-HH----HHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred hCCCccccCCC-CC-HHHHHHHHHHHHHcCCCCC-h-HH----HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 23344322222 12 2345566789999998875 3 22 7899999988888899888888877888777777777
Q ss_pred HHhhcCCccc
Q 021133 302 SESLRRGIMF 311 (317)
Q Consensus 302 ~~~I~RdIVf 311 (317)
...|..++..
T Consensus 149 ~q~i~q~~w~ 158 (339)
T 2q0z_X 149 AQMVTQAMWS 158 (339)
T ss_dssp HHHHHHTCCT
T ss_pred HHHHHHhcCC
Confidence 7766666543
No 124
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=26.70 E-value=76 Score=24.50 Aligned_cols=38 Identities=13% Similarity=0.189 Sum_probs=29.7
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHH
Q 021133 240 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEF 278 (317)
Q Consensus 240 ~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~el 278 (317)
.++..++. ..|.+..+|.+..++..+++-|.+++|++-
T Consensus 51 ~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le~~ 88 (153)
T 2pex_A 51 LVMLVLWE-TDERSVSEIGERLYLDSATLTPLLKRLQAA 88 (153)
T ss_dssp HHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHh-CCCcCHHHHHHHhCCCcccHHHHHHHHHHC
Confidence 34444432 356899999999999999999999999863
No 125
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=26.24 E-value=53 Score=26.25 Aligned_cols=46 Identities=20% Similarity=0.058 Sum_probs=36.5
Q ss_pred CcccHHHHHHH-hhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHH
Q 021133 237 VRPFLMDVIYC-WSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQL 282 (317)
Q Consensus 237 ~~~~l~~vv~~-Wa~G~~f~ei~~~t~l~EGdiVR~irRl~ellrQl 282 (317)
+.+.--.++.. +..|.|+.||.+..++++|++=+.+.|.-.-|++.
T Consensus 136 L~~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 136 LPEAQRALIERAFFGDLTHRELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp SCHHHHHHHHHHHHSCCSSCCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 44444455544 68999999999999999999999998888877753
No 126
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=26.01 E-value=1.1e+02 Score=25.46 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=30.0
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 240 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 240 ~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
.++.+++. ..|.+..+|.+..++..+++-|.+.||++
T Consensus 52 ~iL~~L~~-~~~~t~~eLa~~l~i~~stvs~~l~~Le~ 88 (207)
T 2fxa_A 52 HILWIAYQ-LNGASISEIAKFGVMHVSTAFNFSKKLEE 88 (207)
T ss_dssp HHHHHHHH-HTSEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-CCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444433 36799999999999999999999999976
No 127
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=25.29 E-value=46 Score=25.49 Aligned_cols=65 Identities=6% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCccchhhHHhhhhcCCChHHHHHHH---------hhCCCCCCCHHHHHHHhhhc
Q 021133 122 RDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELM---------FNGTFNDLDHHQVAALASCF 186 (317)
Q Consensus 122 ~~ef~~~~~vL~~lgyid~~~~vt~kGrvA~eI~s~~eLlltEll---------~~g~f~~L~p~elaAllS~~ 186 (317)
.+...++++-|++.|||.....+..+..+...+...-.-++.++. ...++.+++++|+..+...+
T Consensus 65 ~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l 138 (146)
T 3tgn_A 65 QAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEEHHHHHEHTLLTYEQVATQFTPNEQKVIQRFL 138 (146)
T ss_dssp HHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
No 128
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=25.24 E-value=58 Score=24.09 Aligned_cols=41 Identities=12% Similarity=-0.024 Sum_probs=29.6
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHhCCCCCC---CccchhhHHhhhh
Q 021133 113 MRDSQIQKFRDELKNRSRVLKKLGHINAD---GVVQLKGRAACLI 154 (317)
Q Consensus 113 i~~~~~~~~~~ef~~~~~vL~~lgyid~~---~~vt~kGrvA~eI 154 (317)
+....++- ...+.+.++.|++.|||+.. ..+|.||+-+-+.
T Consensus 26 La~~~~ls-~~~~~~~l~~L~~~GLI~~~~~~~~LT~kG~~~l~~ 69 (95)
T 1r7j_A 26 IMYGANLS-YALTGRYIKMLMDLEIIRQEGKQYMLTKKGEELLED 69 (95)
T ss_dssp HHHHHTCC-HHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHHHH
T ss_pred HHHHhCcC-HHHHHHHHHHHHHCCCeEEECCeeEEChhHHHHHHH
Confidence 33334443 46899999999999999652 3699999866543
No 129
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=25.12 E-value=65 Score=25.22 Aligned_cols=37 Identities=8% Similarity=0.153 Sum_probs=29.4
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 240 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 240 ~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
.++..++. ..|.+..+|.+..++..+++-|.+++|++
T Consensus 56 ~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~ 92 (162)
T 3cjn_A 56 RALAILSA-KDGLPIGTLGIFAVVEQSTLSRALDGLQA 92 (162)
T ss_dssp HHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-CCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 44444433 34689999999999999999999999876
No 130
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=24.82 E-value=87 Score=23.18 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=26.4
Q ss_pred hhCCCCHHHHHhhc-CCCcchHHHHHHHHHH
Q 021133 248 WSKGATFAEVIQMT-DIFEGSIIRSARRLDE 277 (317)
Q Consensus 248 Wa~G~~f~ei~~~t-~l~EGdiVR~irRl~e 277 (317)
+..+.+|.+|.+.. +++.+.+-+.+++|++
T Consensus 24 ~~~~~~~~eLa~~l~~is~~tls~~L~~Le~ 54 (107)
T 2hzt_A 24 THGKKRTSELKRLMPNITQKMLTQQLRELEA 54 (107)
T ss_dssp TTCCBCHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 44559999999998 9999999999999876
No 131
>3ov9_A Nucleoprotein; orthogonal bundle, viral genomic encapsidation, viral protein; 1.60A {Rift valley fever virus} PDB: 3ouo_A 3lyf_A 4h5m_A 4h5o_A 4h5p_A 4h5q_A 4h6f_A 4h6g_A
Probab=24.65 E-value=53 Score=29.09 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=41.1
Q ss_pred HHHcCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCCCCCCccchhhHHhhhhc
Q 021133 78 KLFAHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLID 155 (317)
Q Consensus 78 ~l~~~p~~~c-~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~ef~~~~~vL~~lgyid~~~~vt~kGrvA~eI~ 155 (317)
...=+|-++- ..++-+.-+.+... ..+ .+. +. +=++++.+|..+|.||.|+.++..=..|++++
T Consensus 177 S~tINp~~Rg~s~~ev~~sf~~pm~---------Aa~---~s~-f~-~~eqR~~~L~~~gil~~n~~~~~~v~~aA~~~ 241 (245)
T 3ov9_A 177 SRVINPNLRGRTKEEVAATFTQPMN---------AAV---NSN-FI-SHEKRREFLKAFGLVDSNGKPSAAVMAAAQAY 241 (245)
T ss_dssp HHHHCTTSCSCCHHHHHHHHHHHHH---------HHH---TCS-SS-CHHHHHHHHHHTTSBCTTSCBCHHHHHHHHHH
T ss_pred HhhcCHhhccCCHHHHHHHHHhHHH---------HHH---Hcc-CC-CHHHHHHHHHHhCccCCCCCCcHHHHHHHHHH
Confidence 3344566666 66665555544332 111 222 33 44678999999999999999987777777654
No 132
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=24.49 E-value=1.3e+02 Score=19.74 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCccchhhHHhhhhcCCChHHHHHHHhhCC
Q 021133 123 DELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGT 170 (317)
Q Consensus 123 ~ef~~~~~vL~~lgyid~~~~vt~kGrvA~eI~s~~eLlltEll~~g~ 170 (317)
+.|...+.-|..+||.|.+ .-+.|-....+|-=--+|.||+|.
T Consensus 9 ~~~~~~l~~L~~MGF~~~~-----~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 9 VRFQQQLEQLNSMGFINRE-----ANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHHTTTCCCHH-----HHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHcCCCCHH-----HHHHHHHHhCCCHHHHHHHHHHcC
Confidence 5788899999999998743 344455555566667788888764
No 133
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=24.15 E-value=2.3e+02 Score=21.25 Aligned_cols=66 Identities=12% Similarity=0.144 Sum_probs=37.5
Q ss_pred ChHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 021133 62 DPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLK 133 (317)
Q Consensus 62 ~~~~~~~~~~~~~l~~~l~~~p~~~c~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~ef~~~~~vL~ 133 (317)
..+...+..++.++...+.+-.. ...|....++-++..++..+++.+.+++.. ....|+..+.-|+
T Consensus 22 a~~~~~lk~E~~~lk~E~~stSa-QDeFAKWaKL~Rk~DKl~~ele~l~~~l~~-----~k~~F~~~~~~~~ 87 (93)
T 3sjb_C 22 SKKYLAKVKERHELKEFNNSISA-QDNYAKWTKNNRKLDSLDKEINNLKDEIQS-----ENKAFQAHLHKLE 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHh
Confidence 34556667777777777764332 116666666666666666677777666666 2345665554443
No 134
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=23.80 E-value=52 Score=23.82 Aligned_cols=26 Identities=4% Similarity=0.042 Sum_probs=24.7
Q ss_pred CCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 252 ATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 252 ~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
.+..+|.+..++..+++-|.+.+|++
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~ 56 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEE 56 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 89999999999999999999999986
No 135
>2ga1_A Protein of unknown function DUF433; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Anabaena variabilis} SCOP: a.4.1.16
Probab=23.41 E-value=1.3e+02 Score=22.95 Aligned_cols=48 Identities=10% Similarity=0.079 Sum_probs=37.7
Q ss_pred CcccHHHHHHHhhCCCCHHHHHhhc-CCCcchHHHHHHHHHHHHHHHHH
Q 021133 237 VRPFLMDVIYCWSKGATFAEVIQMT-DIFEGSIIRSARRLDEFLNQLRA 284 (317)
Q Consensus 237 ~~~~l~~vv~~Wa~G~~f~ei~~~t-~l~EGdiVR~irRl~ellrQl~~ 284 (317)
-+-..-.++..|+.|.|..+|++.. ++...||.-++.=-.+...+|..
T Consensus 50 TRI~V~~Il~~l~~G~s~eeIl~~yP~Lt~edI~aAL~Ya~~~~~eId~ 98 (106)
T 2ga1_A 50 TRIPVWTLVAYRQQGAPDKELLANYPGLTAEDLSAAWHYYEQNPEQIDR 98 (106)
T ss_dssp SCCBHHHHHHHHHTTCCHHHHHHHSTTCCHHHHHHHHHHHHHSHHHHHH
T ss_pred ceeeHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888889999999999998 89999988887666555555544
No 136
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=23.34 E-value=41 Score=21.28 Aligned_cols=15 Identities=27% Similarity=0.364 Sum_probs=11.9
Q ss_pred CCCCHHHHHHHhhhc
Q 021133 172 NDLDHHQVAALASCF 186 (317)
Q Consensus 172 ~~L~p~elaAllS~~ 186 (317)
++++|+|+||+=|-+
T Consensus 15 egfspeelaalesel 29 (48)
T 1g6u_A 15 EGFSPEELAALESEL 29 (48)
T ss_dssp TTCSHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 467999999987655
No 137
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=22.91 E-value=2.4e+02 Score=20.99 Aligned_cols=7 Identities=0% Similarity=-0.301 Sum_probs=5.6
Q ss_pred cCCCCCC
Q 021133 81 AHPLNKS 87 (317)
Q Consensus 81 ~~p~~~c 87 (317)
.-||..|
T Consensus 47 g~~CPvC 53 (112)
T 1l8d_A 47 KGKCPVC 53 (112)
T ss_dssp SEECTTT
T ss_pred CCCCCCC
Confidence 4589999
No 138
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=22.81 E-value=2.1e+02 Score=21.26 Aligned_cols=37 Identities=14% Similarity=0.067 Sum_probs=29.8
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 240 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 240 ~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
.++..++. ..|.+..+|.+..++..+++-|.+++|++
T Consensus 42 ~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~L~~ 78 (140)
T 2nnn_A 42 AALVRLGE-TGPCPQNQLGRLTAMDAATIKGVVERLDK 78 (140)
T ss_dssp HHHHHHHH-HSSBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444433 35799999999999999999999999886
No 139
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=22.56 E-value=62 Score=30.52 Aligned_cols=37 Identities=5% Similarity=0.080 Sum_probs=30.8
Q ss_pred HHHHHHHhhC---CCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 241 LMDVIYCWSK---GATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 241 l~~vv~~Wa~---G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
+.-+.+-|-+ |.+..+|.+...+..|++.|.+.||++
T Consensus 407 ~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~ 446 (487)
T 1hsj_A 407 IYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKD 446 (487)
T ss_dssp HHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344555765 589999999999999999999999986
No 140
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=22.27 E-value=85 Score=24.00 Aligned_cols=29 Identities=10% Similarity=0.322 Sum_probs=26.3
Q ss_pred CCCCHHHHHhhcCCCcchHHHHHHHHHHH
Q 021133 250 KGATFAEVIQMTDIFEGSIIRSARRLDEF 278 (317)
Q Consensus 250 ~G~~f~ei~~~t~l~EGdiVR~irRl~el 278 (317)
.|.+..+|.+..++..+++-|.+.||++-
T Consensus 53 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~ 81 (148)
T 3nrv_A 53 SDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 36899999999999999999999999864
No 141
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=22.24 E-value=1.1e+02 Score=26.74 Aligned_cols=37 Identities=8% Similarity=0.230 Sum_probs=30.8
Q ss_pred HHHHHHHhhC---CCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 241 LMDVIYCWSK---GATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 241 l~~vv~~Wa~---G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
+.-+.+-|-+ |.+..+|.+...+..|++.|.+.||++
T Consensus 37 ~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~ 76 (250)
T 1p4x_A 37 FILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVK 76 (250)
T ss_dssp HHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 3445566753 689999999999999999999999986
No 142
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=22.12 E-value=1.9e+02 Score=23.76 Aligned_cols=66 Identities=20% Similarity=0.176 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCChhhhhhccCcccHHHHHHHhh--C--CCCHHHHHhhcCCCcchHHHHHHHHHHHH
Q 021133 208 QLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWS--K--GATFAEVIQMTDIFEGSIIRSARRLDEFL 279 (317)
Q Consensus 208 ~l~~~a~~i~~~~~~~~l~~~~~~~~~~~~~~~l~~vv~~Wa--~--G~~f~ei~~~t~l~EGdiVR~irRl~ell 279 (317)
.+.+.|..|.+...+.++-... + +..=...++|..+ . ..+..+|.+.+++.|++|=++.+.+.+.|
T Consensus 124 ~v~~~A~~i~~~~~~~~~~~gr-----~-P~~iAaAaly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l 193 (200)
T 1ais_B 124 KVRRRAIEILDEAYKRGLTSGK-----S-PAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKL 193 (200)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTS-----C-HHHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCC-----C-HHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 4567777887777776664221 0 2222333455543 2 36799999999999999988877776654
No 143
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=21.48 E-value=1.2e+02 Score=23.46 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=24.2
Q ss_pred CCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 252 ATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 252 ~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
-|..+|.+.+++.++++.|.+++|++
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~ 77 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQ 77 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 68899999999999999999999986
No 144
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=21.18 E-value=1.4e+02 Score=22.55 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=30.9
Q ss_pred ChHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021133 62 DPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRD 115 (317)
Q Consensus 62 ~~~~~~~~~~~~~l~~~l~~~p~~~c~~~~~~~~~~~~~~l~~~~~~l~~~i~~ 115 (317)
..+...+..++.++...+.+-..- ..|....++-++..++..+++.+.+++..
T Consensus 29 ~~~~~~lk~E~~~lk~E~~stSaQ-DEFAKWAKL~Rk~DKl~~ele~l~~~L~s 81 (94)
T 3vlc_E 29 SKKYLAKVKERHELKEFNNSISAQ-DNYAKWTKNNRKLDSLDKEINNLKDEIQS 81 (94)
T ss_dssp THHHHHHHHHHHHHHHHHTTSCTT-TCHHHHHHHHHHHHHHHHHTTTHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888754431 14444444444444444444444444444
No 145
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=21.15 E-value=77 Score=24.03 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=25.9
Q ss_pred hhCCCCHHHHHhhcCCCcchHHHHHHHHH
Q 021133 248 WSKGATFAEVIQMTDIFEGSIIRSARRLD 276 (317)
Q Consensus 248 Wa~G~~f~ei~~~t~l~EGdiVR~irRl~ 276 (317)
.....|..++.+.+++++-+|+|.+++|-
T Consensus 32 ~~~~~si~elA~~~~vS~aTv~Rf~kkLG 60 (107)
T 3iwf_A 32 KVVNMTSQEIANQLETSSTSIIRLSKKVT 60 (107)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred HHHHCCHHHHHHHHCCCHHHHHHHHHHhC
Confidence 46778999999999999999999999873
No 146
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=21.02 E-value=1.1e+02 Score=22.11 Aligned_cols=43 Identities=21% Similarity=0.091 Sum_probs=36.1
Q ss_pred CcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHH
Q 021133 237 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFL 279 (317)
Q Consensus 237 ~~~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~ell 279 (317)
+.+.=.+|+...+.|.+..+|-+..+++++++=..++|+-.-|
T Consensus 30 Lt~rE~~Vl~l~~~G~s~~eIA~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 30 LTPRECLILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 6677778888899999999999999999999887777764443
No 147
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=20.86 E-value=1.6e+02 Score=22.94 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=23.7
Q ss_pred CCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 252 ATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 252 ~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
.+-.+|.+...+..+++.|.+.||++
T Consensus 53 ~t~~eLa~~l~~~~~tvsr~v~~Le~ 78 (148)
T 4fx0_A 53 LTMSELAARIGVERTTLTRNLEVMRR 78 (148)
T ss_dssp -CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 68999999999999999999999975
No 148
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=20.82 E-value=1.7e+02 Score=21.83 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=33.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021133 60 IEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRD 115 (317)
Q Consensus 60 i~~~~~~~~~~~~~~l~~~l~~~p~~~c~~~~~~~~~~~~~~l~~~~~~l~~~i~~ 115 (317)
+...+...+.++...+.+...+.-|..-..++...+-.+...|..+++.|+.+...
T Consensus 18 ls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~ 73 (90)
T 2wt7_B 18 FTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSR 73 (90)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777888888888888877664322233333344555555566666655554
No 149
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=20.71 E-value=1.1e+02 Score=22.92 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=25.9
Q ss_pred CCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 021133 250 KGATFAEVIQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 250 ~G~~f~ei~~~t~l~EGdiVR~irRl~e 277 (317)
.|.+..+|.+..++..+++-|.+++|++
T Consensus 49 ~~~t~~ela~~l~~s~~~vs~~l~~Le~ 76 (142)
T 2fbi_A 49 GEMESYQLANQACILRPSMTGVLARLER 76 (142)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 5689999999999999999999999986
No 150
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.55 E-value=1.2e+02 Score=20.97 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=34.9
Q ss_pred HHHcCCCCChhhhhhccCcccHHHHHHHhh-CCCCHHHHHhhc-----CCCcchHHHHHHHHHH
Q 021133 220 QNECKLEVNVDEYVESTVRPFLMDVIYCWS-KGATFAEVIQMT-----DIFEGSIIRSARRLDE 277 (317)
Q Consensus 220 ~~~~~l~~~~~~~~~~~~~~~l~~vv~~Wa-~G~~f~ei~~~t-----~l~EGdiVR~irRl~e 277 (317)
..++|+..++ -...+.+++..-- ...+..||.+.. ++...++=|.+..|.+
T Consensus 8 l~~~g~~~t~-------~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 8 LKKAGLKVTL-------PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp HHHTTCCCCH-------HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHcCCCcCH-------HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 4567877664 2345555554332 458899999888 8888888888777665
No 151
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=20.53 E-value=50 Score=26.29 Aligned_cols=25 Identities=8% Similarity=0.199 Sum_probs=12.0
Q ss_pred hCCCCHHHHHhhcCCCcchHHHHHH
Q 021133 249 SKGATFAEVIQMTDIFEGSIIRSAR 273 (317)
Q Consensus 249 a~G~~f~ei~~~t~l~EGdiVR~ir 273 (317)
..|.|..+|.+..++...+|-||++
T Consensus 39 ~~G~s~~~IA~~lgis~~TV~rwl~ 63 (159)
T 2k27_A 39 HQGVRPCDISRQLRVSHGCVSKILG 63 (159)
T ss_dssp HHTCCHHHHHHHHTCCSHHHHHHHC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3444444444444444444444443
No 152
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=20.46 E-value=1.2e+02 Score=23.13 Aligned_cols=70 Identities=21% Similarity=0.382 Sum_probs=45.0
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCChHHHHHHH---HHHHHHHHHHcCCCCCC-ChHHHHHH
Q 021133 26 RPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVN---QIEELEHKLFAHPLNKS-QDENQIRC 95 (317)
Q Consensus 26 ~~~~~r~~~~~~l~~~~~~~~~~~p~l~p~~~~~i~~~~~~~~~~---~~~~l~~~l~~~p~~~c-~~~~~~~~ 95 (317)
.+.+-++.+...+.++.+..|.+.|+..|+..-...-+++.+.+. .+..+++.+.+....+. .+...+++
T Consensus 8 ~~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~l 81 (119)
T 3p1f_A 8 KPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWL 81 (119)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 344567778888888777667788999887542112345555554 46777788887776665 55544443
No 153
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=20.32 E-value=1.6e+02 Score=18.71 Aligned_cols=42 Identities=21% Similarity=0.329 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCccchhhHHhhhhcCCChHHHHHHHhhC
Q 021133 123 DELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNG 169 (317)
Q Consensus 123 ~ef~~~~~vL~~lgyid~~~~vt~kGrvA~eI~s~~eLlltEll~~g 169 (317)
..|...+.-|..+||-|.+ .-+.|-.-+.+|-=--+|.||+|
T Consensus 5 ~~~~~~i~~L~~MGF~d~~-----~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 5 ERYEHQLRQLNDMGFFDFD-----RNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HHTHHHHHHHHHTTCCCHH-----HHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCCcHH-----HHHHHHHHhCCCHHHHHHHHHcc
Confidence 3577888999999997643 22334444555666777777765
No 154
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=20.18 E-value=72 Score=22.97 Aligned_cols=28 Identities=7% Similarity=0.044 Sum_probs=25.4
Q ss_pred CCCCHHHH----HhhcCCCcchHHHHHHHHHH
Q 021133 250 KGATFAEV----IQMTDIFEGSIIRSARRLDE 277 (317)
Q Consensus 250 ~G~~f~ei----~~~t~l~EGdiVR~irRl~e 277 (317)
.|.+..+| .+..++..+++-|.+++|++
T Consensus 21 ~~~~~~el~~~la~~l~is~~tvs~~l~~Le~ 52 (99)
T 1tbx_A 21 EGIATYDLYKKVNAEFPMSTATFYDAKKFLIQ 52 (99)
T ss_dssp TTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 46899999 88889999999999999987
No 155
>3may_A RV0203, possible exported protein; helical protein, heme-binding protein; 2.50A {Mycobacterium tuberculosis}
Probab=20.12 E-value=1.4e+02 Score=22.85 Aligned_cols=27 Identities=11% Similarity=0.331 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCChhh
Q 021133 205 PLQQLQESARKIAEIQNECKLEVNVDE 231 (317)
Q Consensus 205 ~~~~l~~~a~~i~~~~~~~~l~~~~~~ 231 (317)
.+..|+.|..-|.++..+||+++++..
T Consensus 62 v~~dL~~I~qPl~Dl~~rC~~~v~p~q 88 (101)
T 3may_A 62 VASDLHALSQPLTDLSTRCSLPISGLQ 88 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSCSSGG
T ss_pred HHHHHHHHHhhHHHHHHhcCCCCChHH
Confidence 457889999999999999999988643
Done!