Query 021135
Match_columns 317
No_of_seqs 188 out of 1530
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 07:52:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021135.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021135hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1581 UDP-galactose transpor 100.0 1.7E-46 3.8E-51 330.1 25.3 283 10-294 6-326 (327)
2 KOG1580 UDP-galactose transpor 100.0 2.8E-45 6E-50 311.2 15.7 272 10-285 5-317 (337)
3 PF08449 UAA: UAA transporter 100.0 2.5E-40 5.4E-45 305.0 28.2 268 19-287 1-303 (303)
4 KOG1582 UDP-galactose transpor 100.0 4.3E-40 9.3E-45 284.7 18.5 267 12-285 37-336 (367)
5 TIGR00817 tpt Tpt phosphate/ph 100.0 5.8E-28 1.2E-32 222.6 26.5 232 46-288 62-300 (302)
6 PF06027 DUF914: Eukaryotic pr 100.0 7.8E-26 1.7E-30 208.4 26.4 236 46-288 76-312 (334)
7 PTZ00343 triose or hexose phos 99.9 1.3E-25 2.8E-30 210.8 27.5 226 47-283 112-350 (350)
8 KOG1583 UDP-N-acetylglucosamin 99.9 7E-28 1.5E-32 209.6 9.3 234 41-282 56-315 (330)
9 PLN00411 nodulin MtN21 family 99.9 3E-24 6.5E-29 201.4 31.1 234 50-286 79-333 (358)
10 KOG1441 Glucose-6-phosphate/ph 99.9 1.5E-25 3.2E-30 204.2 9.9 261 17-289 51-315 (316)
11 PRK11453 O-acetylserine/cystei 99.9 1.4E-22 2.9E-27 186.6 28.2 230 47-284 56-290 (299)
12 PRK11689 aromatic amino acid e 99.9 1E-22 2.2E-27 187.1 23.9 227 48-284 60-290 (295)
13 PRK11272 putative DMT superfam 99.9 1E-21 2.3E-26 180.1 27.9 222 46-285 65-289 (292)
14 TIGR00950 2A78 Carboxylate/Ami 99.9 1.2E-21 2.7E-26 176.2 27.9 215 46-276 43-259 (260)
15 PRK15430 putative chlorampheni 99.9 1.5E-21 3.3E-26 179.4 24.3 207 54-281 78-285 (296)
16 PRK10532 threonine and homoser 99.9 6E-20 1.3E-24 168.6 27.4 216 47-285 69-285 (293)
17 KOG1444 Nucleotide-sugar trans 99.9 1.9E-20 4.1E-25 167.6 19.4 259 17-291 49-310 (314)
18 KOG2234 Predicted UDP-galactos 99.9 3.1E-19 6.7E-24 162.0 26.0 277 5-286 45-327 (345)
19 TIGR03340 phn_DUF6 phosphonate 99.9 1.3E-19 2.9E-24 165.3 21.7 210 52-278 66-280 (281)
20 PF04142 Nuc_sug_transp: Nucle 99.8 2.2E-19 4.8E-24 160.0 21.1 221 48-272 16-244 (244)
21 COG0697 RhaT Permeases of the 99.8 1E-16 2.3E-21 145.4 29.2 217 48-282 68-288 (292)
22 KOG1443 Predicted integral mem 99.8 1.6E-18 3.4E-23 153.5 16.2 232 41-284 72-318 (349)
23 KOG4510 Permease of the drug/m 99.8 3.7E-20 8.1E-25 160.9 4.1 230 49-285 97-329 (346)
24 KOG3912 Predicted integral mem 99.8 4.9E-17 1.1E-21 142.4 20.7 267 12-281 36-334 (372)
25 TIGR00803 nst UDP-galactose tr 99.8 1.3E-17 2.9E-22 147.0 13.7 204 73-279 2-222 (222)
26 COG5070 VRG4 Nucleotide-sugar 99.7 2.6E-17 5.6E-22 139.7 13.6 262 17-290 43-305 (309)
27 TIGR00688 rarD rarD protein. T 99.7 1.1E-15 2.4E-20 137.6 23.7 183 51-256 72-255 (256)
28 TIGR00776 RhaT RhaT L-rhamnose 99.7 2E-14 4.3E-19 131.8 24.4 210 56-282 66-289 (290)
29 KOG1442 GDP-fucose transporter 99.7 3.7E-17 8E-22 142.7 5.3 232 49-288 102-334 (347)
30 KOG2765 Predicted membrane pro 99.7 1.6E-15 3.5E-20 137.9 14.3 224 57-285 167-394 (416)
31 PF03151 TPT: Triose-phosphate 99.6 3.5E-14 7.6E-19 117.5 16.3 141 141-281 1-153 (153)
32 KOG2766 Predicted membrane pro 99.6 3.4E-16 7.4E-21 135.5 0.4 224 46-284 75-302 (336)
33 COG5006 rhtA Threonine/homoser 99.6 2.7E-12 5.8E-17 111.5 24.2 218 46-285 68-286 (292)
34 COG2962 RarD Predicted permeas 99.5 3.6E-12 7.9E-17 113.2 24.1 212 52-285 75-287 (293)
35 PF00892 EamA: EamA-like trans 99.2 4.8E-10 1E-14 88.7 11.5 124 150-280 1-125 (126)
36 COG2510 Predicted membrane pro 99.1 2.1E-10 4.5E-15 89.8 8.6 134 142-280 5-138 (140)
37 PF06800 Sugar_transport: Suga 99.0 3.3E-07 7.2E-12 82.1 22.5 249 11-277 8-267 (269)
38 PRK15430 putative chlorampheni 98.9 1.6E-07 3.5E-12 86.4 18.6 140 137-280 5-144 (296)
39 KOG4314 Predicted carbohydrate 98.9 6.3E-09 1.4E-13 87.5 7.8 223 50-285 54-280 (290)
40 PF13536 EmrE: Multidrug resis 98.9 2.8E-08 6E-13 78.2 10.4 76 47-123 32-108 (113)
41 TIGR00688 rarD rarD protein. T 98.8 2.3E-07 4.9E-12 83.4 17.6 136 141-279 3-140 (256)
42 PF05653 Mg_trans_NIPA: Magnes 98.8 7.7E-08 1.7E-12 88.5 11.6 221 52-284 52-295 (300)
43 TIGR03340 phn_DUF6 phosphonate 98.6 1.1E-06 2.5E-11 80.1 15.4 133 142-281 3-135 (281)
44 PF00892 EamA: EamA-like trans 98.6 5.7E-07 1.2E-11 70.9 10.5 74 47-120 51-125 (126)
45 PRK02971 4-amino-4-deoxy-L-ara 98.5 4E-06 8.6E-11 67.4 14.0 120 141-284 3-125 (129)
46 PF13536 EmrE: Multidrug resis 98.4 9.6E-06 2.1E-10 63.6 13.8 103 179-284 6-109 (113)
47 PLN00411 nodulin MtN21 family 98.4 1.2E-05 2.6E-10 75.8 16.2 139 141-283 14-158 (358)
48 PRK15051 4-amino-4-deoxy-L-ara 98.4 8.4E-06 1.8E-10 63.8 12.4 63 58-120 46-108 (111)
49 TIGR00950 2A78 Carboxylate/Ami 98.2 3.8E-05 8.2E-10 68.8 14.0 112 157-280 6-118 (260)
50 PF08449 UAA: UAA transporter 98.2 7.6E-05 1.6E-09 68.9 15.2 127 154-287 14-142 (303)
51 TIGR00817 tpt Tpt phosphate/ph 98.1 8.2E-05 1.8E-09 68.5 15.0 124 150-279 12-135 (302)
52 PRK11272 putative DMT superfam 98.1 0.00017 3.6E-09 66.2 16.6 126 145-280 13-140 (292)
53 COG2510 Predicted membrane pro 98.1 1.6E-05 3.4E-10 62.7 8.1 73 48-120 66-138 (140)
54 COG2962 RarD Predicted permeas 98.1 0.00017 3.7E-09 64.8 15.4 140 140-284 7-147 (293)
55 PTZ00343 triose or hexose phos 98.1 0.00014 3.1E-09 68.5 15.9 136 141-280 50-185 (350)
56 PRK15051 4-amino-4-deoxy-L-ara 98.1 4.6E-05 9.9E-10 59.7 9.9 60 220-279 48-107 (111)
57 PRK11453 O-acetylserine/cystei 98.0 0.00022 4.8E-09 65.6 15.3 123 143-280 7-131 (299)
58 PRK11689 aromatic amino acid e 97.9 0.00046 9.9E-09 63.4 14.8 129 141-281 5-137 (295)
59 TIGR00776 RhaT RhaT L-rhamnose 97.8 0.00035 7.6E-09 64.1 13.2 131 141-282 2-137 (290)
60 PRK10452 multidrug efflux syst 97.8 0.00054 1.2E-08 54.2 12.0 65 219-283 40-105 (120)
61 COG0697 RhaT Permeases of the 97.8 0.002 4.4E-08 58.0 16.7 142 138-285 5-147 (292)
62 KOG2922 Uncharacterized conser 97.7 0.00015 3.2E-09 65.9 7.6 216 53-280 67-305 (335)
63 PF03151 TPT: Triose-phosphate 97.6 0.00063 1.4E-08 55.8 10.3 71 49-119 81-151 (153)
64 PRK09541 emrE multidrug efflux 97.6 0.0017 3.7E-08 50.6 12.0 64 220-283 41-105 (110)
65 PF06027 DUF914: Eukaryotic pr 97.6 0.0022 4.9E-08 59.7 14.9 77 208-284 78-154 (334)
66 PF04142 Nuc_sug_transp: Nucle 97.6 0.00057 1.2E-08 61.1 10.4 71 216-286 24-94 (244)
67 PRK02971 4-amino-4-deoxy-L-ara 97.5 0.00058 1.3E-08 54.9 8.7 71 52-122 50-123 (129)
68 PRK10452 multidrug efflux syst 97.5 0.00061 1.3E-08 53.9 8.4 73 50-122 31-104 (120)
69 PRK13499 rhamnose-proton sympo 97.5 0.037 8.1E-07 51.8 21.0 227 53-281 77-341 (345)
70 PRK13499 rhamnose-proton sympo 97.5 0.0057 1.2E-07 57.2 15.3 142 137-286 4-158 (345)
71 COG2076 EmrE Membrane transpor 97.4 0.00094 2E-08 51.3 8.3 72 49-120 30-102 (106)
72 PF04657 DUF606: Protein of un 97.4 0.0096 2.1E-07 48.4 14.2 129 143-278 4-138 (138)
73 PRK10650 multidrug efflux syst 97.4 0.0013 2.8E-08 51.1 8.4 71 49-119 35-106 (109)
74 PRK11431 multidrug efflux syst 97.4 0.0014 3E-08 50.6 8.4 72 49-120 29-101 (105)
75 PRK10650 multidrug efflux syst 97.3 0.007 1.5E-07 47.1 12.1 60 220-279 46-106 (109)
76 PRK09541 emrE multidrug efflux 97.3 0.002 4.3E-08 50.3 8.9 69 53-121 34-103 (110)
77 PRK10532 threonine and homoser 97.3 0.013 2.7E-07 53.8 15.4 126 138-279 10-135 (293)
78 COG2076 EmrE Membrane transpor 97.2 0.011 2.3E-07 45.5 11.1 62 220-281 41-103 (106)
79 PRK11431 multidrug efflux syst 97.1 0.014 3E-07 45.1 11.8 61 220-280 40-101 (105)
80 PF05653 Mg_trans_NIPA: Magnes 97.1 0.0033 7.2E-08 57.9 9.3 122 136-283 3-124 (300)
81 PF06800 Sugar_transport: Suga 96.9 0.011 2.4E-07 53.2 10.8 117 165-287 7-128 (269)
82 PF00893 Multi_Drug_Res: Small 96.9 0.0086 1.9E-07 45.2 8.5 53 220-272 40-93 (93)
83 COG4975 GlcU Putative glucose 96.6 0.00021 4.6E-09 62.6 -2.1 209 55-279 65-283 (288)
84 PF10639 UPF0546: Uncharacteri 96.5 0.0049 1.1E-07 48.1 4.7 69 51-119 43-112 (113)
85 PF00893 Multi_Drug_Res: Small 96.4 0.011 2.4E-07 44.6 6.2 57 56-112 36-93 (93)
86 KOG4510 Permease of the drug/m 96.3 0.0012 2.7E-08 58.6 0.7 67 216-282 104-170 (346)
87 PF07857 DUF1632: CEO family ( 96.2 0.031 6.8E-07 50.1 8.9 66 222-287 68-140 (254)
88 COG3238 Uncharacterized protei 96.2 0.24 5.3E-06 40.6 13.3 136 139-282 4-147 (150)
89 KOG2234 Predicted UDP-galactos 96.0 0.63 1.4E-05 43.3 16.5 61 224-284 107-167 (345)
90 PF04657 DUF606: Protein of un 95.3 0.24 5.2E-06 40.2 10.1 99 19-118 35-138 (138)
91 COG4975 GlcU Putative glucose 94.7 0.017 3.6E-07 51.0 1.7 132 141-284 3-139 (288)
92 COG5006 rhtA Threonine/homoser 94.6 0.086 1.9E-06 46.8 5.9 58 64-121 225-282 (292)
93 PF10639 UPF0546: Uncharacteri 94.6 0.064 1.4E-06 41.9 4.6 60 219-278 51-111 (113)
94 PF06379 RhaT: L-rhamnose-prot 93.8 2 4.4E-05 39.9 13.4 144 136-287 3-159 (344)
95 KOG1581 UDP-galactose transpor 93.7 1.5 3.2E-05 40.1 12.0 128 152-286 26-160 (327)
96 KOG2765 Predicted membrane pro 93.4 0.16 3.5E-06 47.5 5.6 77 219-295 169-245 (416)
97 TIGR00803 nst UDP-galactose tr 92.6 0.11 2.4E-06 45.5 3.2 62 57-118 160-221 (222)
98 KOG1441 Glucose-6-phosphate/ph 91.8 0.26 5.5E-06 45.7 4.7 122 151-276 28-150 (316)
99 KOG1580 UDP-galactose transpor 91.4 0.36 7.9E-06 42.4 4.9 74 48-121 240-313 (337)
100 KOG4314 Predicted carbohydrate 90.4 0.28 6.1E-06 42.0 3.3 63 221-283 65-127 (290)
101 PF04342 DUF486: Protein of un 90.0 4.3 9.3E-05 31.1 8.9 93 21-118 7-105 (108)
102 KOG3912 Predicted integral mem 87.4 1.5 3.3E-05 39.7 5.8 66 216-281 93-158 (372)
103 KOG4831 Unnamed protein [Funct 86.8 0.91 2E-05 34.7 3.6 70 50-119 53-123 (125)
104 KOG1444 Nucleotide-sugar trans 83.6 25 0.00054 32.5 11.9 131 142-278 14-146 (314)
105 PRK02237 hypothetical protein; 83.3 19 0.00041 27.8 10.6 36 88-123 72-107 (109)
106 COG4858 Uncharacterized membra 83.1 8.7 0.00019 32.6 8.0 85 17-104 129-219 (226)
107 COG3169 Uncharacterized protei 79.9 24 0.00052 26.7 9.6 89 22-119 16-113 (116)
108 PF02694 UPF0060: Uncharacteri 79.4 26 0.00057 26.9 10.1 38 86-123 68-105 (107)
109 KOG2922 Uncharacterized conser 79.0 1 2.2E-05 41.5 1.3 124 136-285 17-140 (335)
110 PRK06638 NADH:ubiquinone oxido 78.6 42 0.00092 28.9 14.1 24 251-274 134-157 (198)
111 PF04342 DUF486: Protein of un 78.2 2.4 5.2E-05 32.5 2.9 29 250-278 77-105 (108)
112 COG3238 Uncharacterized protei 75.2 45 0.00097 27.4 10.3 74 45-119 66-144 (150)
113 COG5070 VRG4 Nucleotide-sugar 74.3 5.8 0.00013 34.8 4.6 72 51-122 226-297 (309)
114 KOG2766 Predicted membrane pro 72.5 2.3 4.9E-05 38.1 1.7 76 208-283 77-152 (336)
115 PRK02237 hypothetical protein; 72.2 43 0.00093 25.9 9.1 48 236-283 60-107 (109)
116 COG3169 Uncharacterized protei 71.9 4.9 0.00011 30.4 3.1 30 250-279 84-113 (116)
117 PF02694 UPF0060: Uncharacteri 70.6 32 0.0007 26.5 7.4 47 237-283 59-105 (107)
118 PF05961 Chordopox_A13L: Chord 70.1 6.3 0.00014 27.5 3.1 24 265-288 6-30 (68)
119 PF05297 Herpes_LMP1: Herpesvi 69.2 1.5 3.3E-05 39.5 0.0 93 70-176 44-142 (381)
120 PRK13108 prolipoprotein diacyl 68.3 59 0.0013 31.9 10.6 24 261-284 254-277 (460)
121 KOG1582 UDP-galactose transpor 65.9 30 0.00066 31.4 7.4 47 76-122 287-333 (367)
122 PHA03049 IMV membrane protein; 63.0 10 0.00022 26.4 3.0 37 265-301 6-44 (68)
123 COG1742 Uncharacterized conser 57.4 11 0.00023 28.9 2.6 36 88-123 71-106 (109)
124 PF08507 COPI_assoc: COPI asso 56.9 26 0.00057 28.1 5.1 13 266-278 90-102 (136)
125 PF06679 DUF1180: Protein of u 56.2 14 0.00031 30.8 3.4 8 299-306 137-144 (163)
126 PF07168 Ureide_permease: Urei 53.4 12 0.00025 34.5 2.6 64 217-281 80-146 (336)
127 PF06609 TRI12: Fungal trichot 52.4 2.7E+02 0.0059 28.4 19.4 26 292-317 564-589 (599)
128 TIGR02840 spore_YtaF putative 51.6 62 0.0014 28.0 6.9 45 233-277 31-77 (206)
129 PF15102 TMEM154: TMEM154 prot 46.4 24 0.00052 28.8 3.2 25 266-290 66-90 (146)
130 PF11346 DUF3149: Protein of u 46.3 17 0.00037 23.0 1.8 32 257-288 7-39 (42)
131 PRK11357 frlA putative fructos 45.6 2.8E+02 0.0062 26.6 17.9 21 267-287 419-439 (445)
132 KOG1443 Predicted integral mem 43.5 94 0.002 28.8 6.8 76 44-119 235-313 (349)
133 PF03348 Serinc: Serine incorp 42.9 2.7E+02 0.0059 27.1 10.4 25 260-284 282-306 (429)
134 PF00558 Vpu: Vpu protein; In 42.8 13 0.00027 27.2 1.0 20 296-315 44-63 (81)
135 PF14851 FAM176: FAM176 family 42.0 34 0.00073 28.2 3.5 7 270-276 35-41 (153)
136 KOG1442 GDP-fucose transporter 41.4 7.2 0.00016 35.3 -0.5 57 224-280 117-173 (347)
137 PF04971 Lysis_S: Lysis protei 40.9 24 0.00052 24.8 2.1 20 273-292 46-65 (68)
138 PF06570 DUF1129: Protein of u 39.4 1.5E+02 0.0032 25.6 7.3 13 47-59 144-156 (206)
139 COG3086 RseC Positive regulato 38.6 77 0.0017 25.9 4.9 27 230-256 69-95 (150)
140 PRK10921 twin-arginine protein 38.3 3E+02 0.0064 24.7 10.8 59 227-285 175-239 (258)
141 COG4736 CcoQ Cbb3-type cytochr 37.3 20 0.00043 24.6 1.2 40 268-307 17-57 (60)
142 PF06379 RhaT: L-rhamnose-prot 36.7 3.7E+02 0.008 25.3 21.6 105 53-159 77-192 (344)
143 TIGR00892 2A0113 monocarboxyla 36.1 4E+02 0.0087 25.6 14.1 11 296-306 440-450 (455)
144 PF04018 DUF368: Domain of unk 35.8 3.3E+02 0.0071 24.5 17.4 74 47-120 52-127 (257)
145 PRK12437 prolipoprotein diacyl 35.8 3.1E+02 0.0067 24.7 9.1 23 261-283 235-257 (269)
146 COG1971 Predicted membrane pro 35.2 69 0.0015 27.4 4.4 48 237-284 42-91 (190)
147 PF11359 gpUL132: Glycoprotein 35.2 60 0.0013 28.2 4.0 53 262-314 59-116 (235)
148 PF05545 FixQ: Cbb3-type cytoc 34.3 16 0.00035 23.7 0.4 27 270-296 19-46 (49)
149 PLN00028 nitrate transmembrane 32.8 4.7E+02 0.01 25.3 14.1 21 235-255 382-402 (476)
150 PF07444 Ycf66_N: Ycf66 protei 32.7 39 0.00084 24.9 2.2 27 260-286 4-30 (84)
151 PRK15432 autoinducer 2 ABC tra 32.4 1.8E+02 0.0039 27.3 7.2 42 262-303 287-340 (344)
152 PF15345 TMEM51: Transmembrane 32.3 40 0.00088 29.7 2.6 25 267-291 67-91 (233)
153 PF13980 UPF0370: Uncharacteri 31.9 61 0.0013 22.0 2.8 35 269-303 11-50 (63)
154 PF04246 RseC_MucC: Positive r 31.8 90 0.0019 24.8 4.5 17 238-254 70-86 (135)
155 PF02487 CLN3: CLN3 protein; 31.2 4.9E+02 0.011 25.1 14.7 31 92-122 79-109 (402)
156 KOG1583 UDP-N-acetylglucosamin 31.0 43 0.00094 30.5 2.6 38 249-286 105-142 (330)
157 PF12606 RELT: Tumour necrosis 30.4 74 0.0016 21.0 3.0 18 274-291 16-33 (50)
158 PRK00052 prolipoprotein diacyl 29.4 46 0.001 30.1 2.7 25 261-285 237-261 (269)
159 COG3247 HdeD Uncharacterized c 29.2 3.6E+02 0.0079 23.0 16.4 157 97-280 15-176 (185)
160 MTH00057 ND6 NADH dehydrogenas 28.6 3.7E+02 0.0079 22.8 10.8 24 251-274 133-156 (186)
161 KOG2532 Permease of the major 27.9 5.9E+02 0.013 25.0 18.9 50 138-187 358-408 (466)
162 TIGR00544 lgt prolipoprotein d 27.5 53 0.0011 29.9 2.7 24 261-284 246-269 (278)
163 PF07857 DUF1632: CEO family ( 25.7 4.9E+02 0.011 23.4 12.7 95 16-121 29-134 (254)
164 PF05620 DUF788: Protein of un 25.6 3E+02 0.0065 22.9 6.8 30 245-274 27-56 (170)
165 PRK14778 lipoprotein signal pe 25.3 89 0.0019 26.7 3.5 8 309-316 172-179 (186)
166 PF08507 COPI_assoc: COPI asso 24.3 3.6E+02 0.0079 21.3 10.4 15 266-280 97-111 (136)
167 KOG1479 Nucleoside transporter 24.0 6.7E+02 0.014 24.3 11.2 64 217-280 129-201 (406)
168 PF12768 Rax2: Cortical protei 22.3 86 0.0019 28.6 3.0 20 271-290 244-263 (281)
169 TIGR02865 spore_II_E stage II 22.0 9.4E+02 0.02 25.3 15.2 41 79-119 14-54 (764)
170 PHA03283 envelope glycoprotein 21.7 90 0.0019 30.9 3.1 10 307-316 467-476 (542)
171 PRK11715 inner membrane protei 21.5 7.7E+02 0.017 24.1 10.2 57 97-166 325-383 (436)
172 KOG3269 Predicted membrane pro 21.4 2.2E+02 0.0047 24.1 4.9 37 248-284 36-74 (180)
173 PF05977 MFS_3: Transmembrane 21.2 8.3E+02 0.018 24.3 17.2 26 231-256 342-367 (524)
174 TIGR01167 LPXTG_anchor LPXTG-m 21.2 84 0.0018 18.2 1.9 15 260-274 9-23 (34)
175 PF04277 OAD_gamma: Oxaloaceta 20.8 1.5E+02 0.0033 20.9 3.6 7 267-273 10-16 (79)
176 PF15471 TMEM171: Transmembran 20.8 1.1E+02 0.0024 27.7 3.2 25 262-286 160-184 (319)
177 PF15201 Rod_cone_degen: Progr 20.1 2.1E+02 0.0045 18.6 3.5 8 310-317 45-52 (54)
No 1
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-46 Score=330.13 Aligned_cols=283 Identities=48% Similarity=0.843 Sum_probs=259.3
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHh--------------------------------------ccCCCCCCCchhH
Q 021135 10 GVKDSRVLKMIFAVSGIMTTLVIYGILQA--------------------------------------SRKAIDPVAPVYK 51 (317)
Q Consensus 10 ~~~~~~~~~~~~~~~gi~~~~~~~g~~qe--------------------------------------~~~~~~~~~~~~~ 51 (317)
+.+..+.+++++|+.||+.+++.||++|| ++++.+++.||+.
T Consensus 6 ~~~~~~~~~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~ 85 (327)
T KOG1581|consen 6 GGMANKIILLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYK 85 (327)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhH
Confidence 45667789999999999999999999999 1233556789999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccCCCCCCCCC
Q 021135 52 YCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPY 131 (317)
Q Consensus 52 ~~~~s~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~ 131 (317)
|..+|+++..+.+++|.||+|+++|++++.|+||.+|||+++.++.|+|++.++|+...++..|+.++...+++ + +.+
T Consensus 86 y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s-~-s~~ 163 (327)
T KOG1581|consen 86 YSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNS-D-SSS 163 (327)
T ss_pred HhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCC-C-Ccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877542 2 223
Q ss_pred CCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchHHHHH
Q 021135 132 SKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFD 211 (317)
Q Consensus 132 ~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 211 (317)
..+..+.++|+.++..++++|++++..|++++++++.+++++|+++|++++++.....+..|.+.+..++...||+.++.
T Consensus 164 ~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~D 243 (327)
T KOG1581|consen 164 KSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFD 243 (327)
T ss_pred ccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHH
Confidence 33456889999999999999999999999999999999999999999999999999888889899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhccccCCCCC
Q 021135 212 VALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKVSEKPRP 291 (317)
Q Consensus 212 il~l~~~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k~~~~~~~~ 291 (317)
++.++.++++||.|++++++++||.+.++++++|+++++++|+++|||++++.||.|..++++|+.+..+.|+|++.+++
T Consensus 244 i~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~~~~~~~ 323 (327)
T KOG1581|consen 244 ILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKKKNQPRK 323 (327)
T ss_pred HHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHhccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988665555
Q ss_pred CCC
Q 021135 292 SEH 294 (317)
Q Consensus 292 ~~~ 294 (317)
.++
T Consensus 324 k~~ 326 (327)
T KOG1581|consen 324 KKA 326 (327)
T ss_pred ccC
Confidence 543
No 2
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.8e-45 Score=311.21 Aligned_cols=272 Identities=31% Similarity=0.496 Sum_probs=245.7
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHhc-----------------------------------------cCCCCCCCc
Q 021135 10 GVKDSRVLKMIFAVSGIMTTLVIYGILQAS-----------------------------------------RKAIDPVAP 48 (317)
Q Consensus 10 ~~~~~~~~~~~~~~~gi~~~~~~~g~~qe~-----------------------------------------~~~~~~~~~ 48 (317)
+.-.++..+|.+|+.|++.|+..||+.||+ ++....+.|
T Consensus 5 ~s~lper~rf~ica~GifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~~~D~t~ 84 (337)
T KOG1580|consen 5 RSWLPERGRFLICAGGIFVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKTEIDNTP 84 (337)
T ss_pred ccccccccceeEEecchhheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeecccccccCCc
Confidence 455778899999999999999999999991 112233578
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccCCCCCC
Q 021135 49 VYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADL 128 (317)
Q Consensus 49 ~~~~~~~s~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~ 128 (317)
-+.|..+++.+.+++..+|.|++|+|+|++++.|+|+|+|+|+++.++.||+|+|++|..++++++||++++..+. +.
T Consensus 85 ~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~--Kv 162 (337)
T KOG1580|consen 85 TKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKEN--KV 162 (337)
T ss_pred chHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcccc--cc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999988742 21
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchHH
Q 021135 129 SPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDC 208 (317)
Q Consensus 129 ~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 208 (317)
.+ ..+....+|-++.++++.+|++++..|||+.+.++.+.-++|+|+|+++.+++...++.+||+++.+.+..++|..
T Consensus 163 ~g--~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~ 240 (337)
T KOG1580|consen 163 GG--AEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYV 240 (337)
T ss_pred CC--CcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHH
Confidence 11 1124456799999999999999999999999988888889999999999999988888999999988888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhccc
Q 021135 209 FFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKV 285 (317)
Q Consensus 209 ~~~il~l~~~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k~~ 285 (317)
|+.+..+++++.+||.|+|..+..+||++.|+++++|++++++.|+++|++|++..||+|.++++.|+.......++
T Consensus 241 ~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK~ 317 (337)
T KOG1580|consen 241 FWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGKK 317 (337)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888775553
No 3
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=100.00 E-value=2.5e-40 Score=304.98 Aligned_cols=268 Identities=37% Similarity=0.565 Sum_probs=238.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh---------------------------------ccCCCCCCCchhHHHHHHHHHHHHHHH
Q 021135 19 MIFAVSGIMTTLVIYGILQA---------------------------------SRKAIDPVAPVYKYCLVSMSNILTTTC 65 (317)
Q Consensus 19 ~~~~~~gi~~~~~~~g~~qe---------------------------------~~~~~~~~~~~~~~~~~s~~~~~~~~~ 65 (317)
+++|+.|++.+++.++++|| .+++.+++.|+++|++.+++++++..+
T Consensus 1 ~~~~~~~i~~~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (303)
T PF08449_consen 1 FLICVAGIFGGCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVL 80 (303)
T ss_pred CEeeHHHHHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999 122445678999999999999999999
Q ss_pred HHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccCCCCCCCCCCCCCCchHHHHHHH
Q 021135 66 QYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLM 145 (317)
Q Consensus 66 ~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~ 145 (317)
+|.||+|+|+|+++++|+++|+++|+++.+++|||++++||++++++++|++++...+...+ +.++........|++++
T Consensus 81 ~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~-~~~~~~~~~~~~G~~ll 159 (303)
T PF08449_consen 81 SNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSS-SSSNSSSFSSALGIILL 159 (303)
T ss_pred HHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccc-cccccccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987643211 11111112233499999
Q ss_pred HHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHH--hCchhHHhHhhhcchHHHHHHHHHHHHHHHHH
Q 021135 146 VGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLIL--EGHLFLAIDFVYHHLDCFFDVALLSTVATTSQ 223 (317)
Q Consensus 146 l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~il~l~~~~~~g~ 223 (317)
+++.++||+.+++|||++++++.+++++++|+|.++.++.++..+. .++..+..++...+|..+..++..++++++++
T Consensus 160 ~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~ 239 (303)
T PF08449_consen 160 LLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQ 239 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888777 78888888888889998888888899999999
Q ss_pred HHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhccccC
Q 021135 224 FFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKVSE 287 (317)
Q Consensus 224 ~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k~~~~ 287 (317)
.+++++++++||++.++++++||++++++|+++|||++++.||+|+++++.|+.++.+.|+||+
T Consensus 240 ~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~~ 303 (303)
T PF08449_consen 240 FFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKKN 303 (303)
T ss_pred HHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence 9999999999999999999999999999999999999999999999999999999999998764
No 4
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.3e-40 Score=284.73 Aligned_cols=267 Identities=28% Similarity=0.428 Sum_probs=245.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhc--------------------------------cCCCCCCCchhHHHHHHHHH
Q 021135 12 KDSRVLKMIFAVSGIMTTLVIYGILQAS--------------------------------RKAIDPVAPVYKYCLVSMSN 59 (317)
Q Consensus 12 ~~~~~~~~~~~~~gi~~~~~~~g~~qe~--------------------------------~~~~~~~~~~~~~~~~s~~~ 59 (317)
+.+++.||++|+.|+|+.++.+|++||. .+..++..|||.|..+++..
T Consensus 37 ~kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~r~iP~rtY~~la~~t 116 (367)
T KOG1582|consen 37 DKPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQTKRRVIPWRTYVILAFLT 116 (367)
T ss_pred cCchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEeecccceecchhHhhhhHhhh
Confidence 4566899999999999999999999991 13345578999999999999
Q ss_pred HHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccCCCCCCCCCCCCCCchH
Q 021135 60 ILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTV 139 (317)
Q Consensus 60 ~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~ 139 (317)
.+.+.++|.||.|+++|+++++|+||.+|||+.+.++.++||++.++.+..+..+|+++++..|+ +.+ .+++.
T Consensus 117 ~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs--~~s-----PNF~~ 189 (367)
T KOG1582|consen 117 VGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADS--QTS-----PNFNL 189 (367)
T ss_pred hhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhccc--ccC-----CCcce
Confidence 99999999999999999999999999999999999999999999999999999999999998853 332 26788
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchH-HHHHHHHHHHH
Q 021135 140 WGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLD-CFFDVALLSTV 218 (317)
Q Consensus 140 ~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~il~l~~~ 218 (317)
.|+.++..|+++||+.+..||+.++.++.+..|+++|...++.++.+..+..+|++++.|.++..||. .....++.++.
T Consensus 190 ~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~ 269 (367)
T KOG1582|consen 190 IGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLA 269 (367)
T ss_pred eeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHH
Confidence 99999999999999999999999999888889999999999999999889999999999999988885 66677777889
Q ss_pred HHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhccc
Q 021135 219 ATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKV 285 (317)
Q Consensus 219 ~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k~~ 285 (317)
+.+|+.+....++.+||.+++.+++.|+.+++++|+++|.+|+|..+..|..+|+.|+++..++|+.
T Consensus 270 gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~n 336 (367)
T KOG1582|consen 270 GYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRN 336 (367)
T ss_pred hHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999843
No 5
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.96 E-value=5.8e-28 Score=222.57 Aligned_cols=232 Identities=13% Similarity=0.062 Sum_probs=184.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccCCC
Q 021135 46 VAPVYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSG 125 (317)
Q Consensus 46 ~~~~~~~~~~s~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~~~ 125 (317)
+..++.+++.|++++....+.|.|++|++++.+++++++.|+++++++++++|||++++++++++++++|+++....
T Consensus 62 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~--- 138 (302)
T TIGR00817 62 SALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDT--- 138 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCC---
Confidence 44677889999998888999999999999999999999999999999999999999999999999999999876422
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHh-Hhhh-
Q 021135 126 ADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAI-DFVY- 203 (317)
Q Consensus 126 ~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~- 203 (317)
+ .+.+..|+++++++.++++++.++.||..++.+.++.+.+.|++.+++++.+|.....++..... +...
T Consensus 139 -~-------~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~ 210 (302)
T TIGR00817 139 -E-------LSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQA 210 (302)
T ss_pred -c-------ccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHh
Confidence 1 13456799999999999999999999987744567888999999999988888765433211100 0100
Q ss_pred ---cchH-HHHHHHHHHH-HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHh
Q 021135 204 ---HHLD-CFFDVALLST-VATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYT 278 (317)
Q Consensus 204 ---~~~~-~~~~il~l~~-~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~ 278 (317)
..+. .+...+..+. +..+.+.++++++++.||+++++.++++|++++++|++++||++|+.|++|.+++++|+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l 290 (302)
T TIGR00817 211 ISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFL 290 (302)
T ss_pred hcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHH
Confidence 0111 1211222222 2223345666799999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccCC
Q 021135 279 RSFFKKVSEK 288 (317)
Q Consensus 279 ~~~~k~~~~~ 288 (317)
+++.|+||++
T Consensus 291 ~~~~k~~~~~ 300 (302)
T TIGR00817 291 YSRVKAQKPK 300 (302)
T ss_pred HHHHhccCcC
Confidence 9987765543
No 6
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.95 E-value=7.8e-26 Score=208.44 Aligned_cols=236 Identities=15% Similarity=0.177 Sum_probs=189.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccCCC
Q 021135 46 VAPVYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSG 125 (317)
Q Consensus 46 ~~~~~~~~~~s~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~~~ 125 (317)
+.||++|++++++.+.++++.+.|++|++.+..+++.++..+++++++++++|+|+++.|++|++++++|++++...|..
T Consensus 76 ~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~ 155 (334)
T PF06027_consen 76 KRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL 155 (334)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999998776431
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHH-HhCchhHHhHhhhc
Q 021135 126 ADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLI-LEGHLFLAIDFVYH 204 (317)
Q Consensus 126 ~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~ 204 (317)
+. ..+.+.++...|+++++++++++|++++.+|++.++. +..+.+....+++.++..+... ++.+-.+. .+.
T Consensus 156 ~~--~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~--~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~---~~w 228 (334)
T PF06027_consen 156 SG--SDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKA--PRVEFLGMLGLFGFIISGIQLAILERSGIES---IHW 228 (334)
T ss_pred cc--ccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccC--CHHHHHHHHHHHHHHHHHHHHHheehhhhhc---cCC
Confidence 11 1111235678899999999999999999999998864 5678888888999888777543 33322221 122
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhcc
Q 021135 205 HLDCFFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKK 284 (317)
Q Consensus 205 ~~~~~~~il~l~~~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k~ 284 (317)
+++.+..++..+++...-+.+....++..+|+..++-..+-.+.++++++++||++++|..++|.++|+.|++++...++
T Consensus 229 ~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~ 308 (334)
T PF06027_consen 229 TSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES 308 (334)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence 33333333333333334444556678999999999999999999999999999999999999999999999999887666
Q ss_pred ccCC
Q 021135 285 VSEK 288 (317)
Q Consensus 285 ~~~~ 288 (317)
+.++
T Consensus 309 ~~~~ 312 (334)
T PF06027_consen 309 PEEE 312 (334)
T ss_pred cccc
Confidence 5443
No 7
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.95 E-value=1.3e-25 Score=210.76 Aligned_cols=226 Identities=14% Similarity=0.123 Sum_probs=179.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccCCCC
Q 021135 47 APVYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGA 126 (317)
Q Consensus 47 ~~~~~~~~~s~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~~~~ 126 (317)
..+++.+++|++++......+.|+++++++.++++|++.|+++++++++++|||++++++++++++++|+++.+..
T Consensus 112 ~~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~---- 187 (350)
T PTZ00343 112 LFLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVK---- 187 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecc----
Confidence 3567889999999888878889999999999999999999999999999999999999999999999999998643
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHccCC-----CCHHHHHHHHHHHHHHHHHHHHH-HhCc-hhHHh
Q 021135 127 DLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYD-----MEIHNQIFYTTLCSCVLSLSGLI-LEGH-LFLAI 199 (317)
Q Consensus 127 ~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~g~-~~~~~ 199 (317)
+. +.++.|++++++|.+++|+++++.||+.++++ .++.+...++..++.++.+|... .++. ....+
T Consensus 188 ~~-------~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~ 260 (350)
T PTZ00343 188 EL-------HFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVW 260 (350)
T ss_pred cc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 21 34678999999999999999999999876543 45566666678899988888754 3332 11111
Q ss_pred Hhh--hcchHHHHHHHHHHHHHHHHHHHHH----HHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhH
Q 021135 200 DFV--YHHLDCFFDVALLSTVATTSQFFIS----YTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVF 273 (317)
Q Consensus 200 ~~~--~~~~~~~~~il~l~~~~~~g~~~~~----~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~ 273 (317)
... ......+..+++..+.+.+.+++++ +++++.+|.+.++.++++|++++++|+++|||++|+.|++|.++++
T Consensus 261 ~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii 340 (350)
T PTZ00343 261 TNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAI 340 (350)
T ss_pred HHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHH
Confidence 000 0011112223333334455555544 5899999999999999999999999999999999999999999999
Q ss_pred hHHHhhhhhc
Q 021135 274 GALYTRSFFK 283 (317)
Q Consensus 274 ~Gi~~~~~~k 283 (317)
+|++++++.|
T Consensus 341 ~Gv~lYs~~k 350 (350)
T PTZ00343 341 LGALLYSLFK 350 (350)
T ss_pred HHHHHHhhcC
Confidence 9999988764
No 8
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.95 E-value=7e-28 Score=209.60 Aligned_cols=234 Identities=21% Similarity=0.382 Sum_probs=186.9
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHHHhhhc-CChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHh
Q 021135 41 KAIDPVAPVYKYCLVSMSNILTTTCQYEALKY-VSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIF 119 (317)
Q Consensus 41 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~aL~~-~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~ 119 (317)
...+|++|.|.|++.-.+++..+.++|+++++ ++.|.++++|+..++.+|++++++.||||+.+|+.+++++.+|++++
T Consensus 56 ~~~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIc 135 (330)
T KOG1583|consen 56 FTVKPKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIIC 135 (330)
T ss_pred cccCCCCchhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeE
Confidence 34567899999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCC----CCCC---CCch--HHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 021135 120 ILFPSGADLSP----YSKG---RENT--VWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLI 190 (317)
Q Consensus 120 ~~~~~~~~~~~----~~~~---~~~~--~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (317)
+...+ .|... -+.+ .... .+|+.++..|++..|..+++||+.++||+.++.|.+||+...+.+..+ +
T Consensus 136 Tl~s~-~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Fl---f 211 (330)
T KOG1583|consen 136 TLFSS-KDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFL---F 211 (330)
T ss_pred EeecC-cchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHH---H
Confidence 77532 12211 0111 1122 358999999999999999999999999999999999999988855432 3
Q ss_pred HhCchhHHhHhhhcc------------hHHHHHHHHHHHHHHHHHHHHHH----HHHhhChHHHHHHHHHHHHHHHHHHH
Q 021135 191 LEGHLFLAIDFVYHH------------LDCFFDVALLSTVATTSQFFISY----TIRTFGALTFATIMTTRQLVSIVLSC 254 (317)
Q Consensus 191 ~~g~~~~~~~~~~~~------------~~~~~~il~l~~~~~~g~~~~~~----~l~~~~a~~~si~~~~~~v~aiils~ 254 (317)
..+++.+.+.....+ |..|++ -+++.+.|++... .-.+.++++++++.++||.++.++|+
T Consensus 212 ~~~div~~~~~~~~se~~~~p~~g~~vP~~~~y----Ll~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~Si 287 (330)
T KOG1583|consen 212 MGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVY----LLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSI 287 (330)
T ss_pred hcchHHHHHHHHhcCcceeccccCccccHHHHH----HHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhhee
Confidence 334454444433222 334443 3456777764333 34899999999999999999999999
Q ss_pred HHhcCCCchhhhhhhhHhHhHHHhhhhh
Q 021135 255 VWFRHPLSWEQCIGSIIVFGALYTRSFF 282 (317)
Q Consensus 255 l~f~e~~t~~~~~G~~lv~~Gi~~~~~~ 282 (317)
+.|++|+|+++|+|..+|+.|-.++...
T Consensus 288 iyF~Npft~~h~lGa~lVF~Gt~~fa~~ 315 (330)
T KOG1583|consen 288 IYFENPFTPWHWLGAALVFFGTLLFANV 315 (330)
T ss_pred eEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999986555443
No 9
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.94 E-value=3e-24 Score=201.38 Aligned_cols=234 Identities=15% Similarity=0.234 Sum_probs=171.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHH------hccccchhHHHHHHHHHHhHHHhhccC
Q 021135 50 YKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLI------MQKRYKGYDYFLALLVTLGCSIFILFP 123 (317)
Q Consensus 50 ~~~~~~s~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~------~k~~~~~~~~~~~~l~~~Gv~l~~~~~ 123 (317)
..+.+.+++.+....+.+.+++|++++.+.++.++.|++++++++++ +|||.+++|+++++++++|+.++...+
T Consensus 79 ~~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~ 158 (358)
T PLN00411 79 SKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYH 158 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHcc
Confidence 45566666654455689999999999999999999999999999999 699999999999999999999876432
Q ss_pred CCCCCC------------C--CCCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH-HH
Q 021135 124 SGADLS------------P--YSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSL-SG 188 (317)
Q Consensus 124 ~~~~~~------------~--~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~ 188 (317)
...... . ...+......|+++++.+++++|++.+.++|..+++.. .....+++..++.+... +.
T Consensus 159 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~ 237 (358)
T PLN00411 159 GPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPA-AFTVSFLYTVCVSIVTSMIG 237 (358)
T ss_pred CcccccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-HhHHHHHHHHHHHHHHHHHH
Confidence 100000 0 00011223569999999999999999999998877632 33444444444433332 33
Q ss_pred HHHhCchhHHhHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhh
Q 021135 189 LILEGHLFLAIDFVYHHLDCFFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIG 268 (317)
Q Consensus 189 ~~~~g~~~~~~~~~~~~~~~~~~il~l~~~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G 268 (317)
...+++-...+ ....+.. +..+++.++++.+++.++++++++.||.+++++.+++|++++++|++++||++++.+++|
T Consensus 238 l~~~~~~~~~~-~~~~~~~-~~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG 315 (358)
T PLN00411 238 LVVEKNNPSVW-IIHFDIT-LITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIG 315 (358)
T ss_pred HHHccCCcccc-eeccchH-HHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 33332111111 0111222 234556666667888899999999999999999999999999999999999999999999
Q ss_pred hhHhHhHHHhhhhhcccc
Q 021135 269 SIIVFGALYTRSFFKKVS 286 (317)
Q Consensus 269 ~~lv~~Gi~~~~~~k~~~ 286 (317)
.++|+.|+++..+.|+|+
T Consensus 316 ~~LIl~Gv~l~~~~~~~~ 333 (358)
T PLN00411 316 GILITLGFYAVMWGKANE 333 (358)
T ss_pred HHHHHHHHHHHHhhhhhh
Confidence 999999999988765544
No 10
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.92 E-value=1.5e-25 Score=204.18 Aligned_cols=261 Identities=20% Similarity=0.232 Sum_probs=207.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHH
Q 021135 17 LKMIFAVSGIMTTLVIYGILQASRKAIDPVAPVYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLI 96 (317)
Q Consensus 17 ~~~~~~~~gi~~~~~~~g~~qe~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~ 96 (317)
+..+-++.+.......+..-....++..++.+++..+++|+.++.+.++.|.|++|+|+++++++|++.|+++.++++++
T Consensus 51 lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~ 130 (316)
T KOG1441|consen 51 LTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLL 130 (316)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHH
Confidence 34433344444433333323223333345689999999999999999999999999999999999999999999999999
Q ss_pred hccccchhHHHHHHHHHHhHHHhhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHhhhhHHHHHHHH--ccCCCCHHHHH
Q 021135 97 MQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLF--KGYDMEIHNQI 174 (317)
Q Consensus 97 ~k~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~l~--~~~~~~~~~~~ 174 (317)
.+|+++++.+++++.++.||.+.+..+ .+.+++|++.++.+.+..+..+++.+++. ++.+.++.+++
T Consensus 131 ~~~~~s~~~~lsL~piv~GV~ias~~e-----------~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll 199 (316)
T KOG1441|consen 131 LGKTYSSMTYLSLLPIVFGVAIASVTE-----------LSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLL 199 (316)
T ss_pred hCCCCcceEEEEEEEeeeeEEEeeecc-----------ccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHH
Confidence 999999999999999999999987652 25789999999999999999999999998 46678999999
Q ss_pred HHHHHHHHHHHH-HHHHH-hCchhHHhHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHH
Q 021135 175 FYTTLCSCVLSL-SGLIL-EGHLFLAIDFVYHHLDCFFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVL 252 (317)
Q Consensus 175 ~~~~~~~~~~~~-~~~~~-~g~~~~~~~~~~~~~~~~~~il~l~~~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiil 252 (317)
.|+.+++..+++ |.... +++....+.....+.. ....++.+++...-+...|.++++++|++.++.++++.++.++.
T Consensus 200 ~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~ 278 (316)
T KOG1441|consen 200 YYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVV 278 (316)
T ss_pred HHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEe
Confidence 999999999988 76543 3322100000001111 12223335666677788899999999999999999999999999
Q ss_pred HHHHhcCCCchhhhhhhhHhHhHHHhhhhhccccCCC
Q 021135 253 SCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKVSEKP 289 (317)
Q Consensus 253 s~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k~~~~~~ 289 (317)
|+++|++|+|+.|..|+++.+.|+++|++.|++++++
T Consensus 279 s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~ 315 (316)
T KOG1441|consen 279 SWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG 315 (316)
T ss_pred EeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 9999999999999999999999999999999876654
No 11
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.92 E-value=1.4e-22 Score=186.61 Aligned_cols=230 Identities=13% Similarity=0.187 Sum_probs=170.6
Q ss_pred CchhHHHHHHHHHH-HHHHHHHHhhhc-CChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccCC
Q 021135 47 APVYKYCLVSMSNI-LTTTCQYEALKY-VSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPS 124 (317)
Q Consensus 47 ~~~~~~~~~s~~~~-~~~~~~~~aL~~-~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~~ 124 (317)
.+++..+..++... ....+.+.+++| ++.+...++.++.|+++++++++++|||++++++++++++++|+.++...+
T Consensus 56 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~- 134 (299)
T PRK11453 56 VPLNLLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDS- 134 (299)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcccc-
Confidence 34555555565433 334577889988 688888888999999999999999999999999999999999999886431
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHccCC-CCHHHHHHHHHHHHHHHHHHHH-HHhCchhHHhHhh
Q 021135 125 GADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYD-MEIHNQIFYTTLCSCVLSLSGL-ILEGHLFLAIDFV 202 (317)
Q Consensus 125 ~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~ 202 (317)
.+ +.+.+..|+++++++.++++.+.+.++|..++.+ .......++....+.+...... ..+++.....+..
T Consensus 135 ---~~----~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (299)
T PRK11453 135 ---LN----GQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLV 207 (299)
T ss_pred ---CC----CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhc
Confidence 11 0123457999999999999999999998765432 1222233333333332222221 2222211111111
Q ss_pred hcchHHHHHHHHHHH-HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhh
Q 021135 203 YHHLDCFFDVALLST-VATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSF 281 (317)
Q Consensus 203 ~~~~~~~~~il~l~~-~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~ 281 (317)
..++..|..++++++ ++.+++.++++++++.++.+++++..++|+++.+++++++||++++.+++|.++++.|+++..+
T Consensus 208 ~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~ 287 (299)
T PRK11453 208 TIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVF 287 (299)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhc
Confidence 234567888888875 5668889999999999999999999999999999999999999999999999999999998887
Q ss_pred hcc
Q 021135 282 FKK 284 (317)
Q Consensus 282 ~k~ 284 (317)
.++
T Consensus 288 ~~~ 290 (299)
T PRK11453 288 GLR 290 (299)
T ss_pred chh
Confidence 665
No 12
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.91 E-value=1e-22 Score=187.10 Aligned_cols=227 Identities=12% Similarity=0.012 Sum_probs=164.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhc----CChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccC
Q 021135 48 PVYKYCLVSMSNILTTTCQYEALKY----VSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFP 123 (317)
Q Consensus 48 ~~~~~~~~s~~~~~~~~~~~~aL~~----~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~ 123 (317)
+++..+..++..+....+.+.+++| .+.....++.++.|+++++++++++|||+++++++++++.++|++++...+
T Consensus 60 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~ 139 (295)
T PRK11689 60 PKRYLLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGD 139 (295)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCC
Confidence 3344444444455556777777765 455667889999999999999999999999999999999999999886442
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhh
Q 021135 124 SGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVY 203 (317)
Q Consensus 124 ~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 203 (317)
.+.+..+...+......|+++++.+.+++|.++++.||..+++ ++....+ ..+.+...+....+++.. ..
T Consensus 140 ~~~~~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~--~~~~~~~---~~~~~~l~~~~~~~~~~~-----~~ 209 (295)
T PRK11689 140 NGLSLAELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK--NGITLFF---ILTALALWIKYFLSPQPA-----MV 209 (295)
T ss_pred ccchhhhhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC--CchhHHH---HHHHHHHHHHHHHhcCcc-----cc
Confidence 1000000000012345699999999999999999999876544 3333221 222222222222232211 11
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhc
Q 021135 204 HHLDCFFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFK 283 (317)
Q Consensus 204 ~~~~~~~~il~l~~~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k 283 (317)
.+++.|..+++.++.+.++++++++++++.+|.+++++.+++|+++++++++++||++++.+++|.++++.|+++.....
T Consensus 210 ~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 210 FSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 34456767777677788899999999999999999999999999999999999999999999999999999988776655
Q ss_pred c
Q 021135 284 K 284 (317)
Q Consensus 284 ~ 284 (317)
+
T Consensus 290 ~ 290 (295)
T PRK11689 290 R 290 (295)
T ss_pred h
Confidence 4
No 13
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.91 E-value=1e-21 Score=180.15 Aligned_cols=222 Identities=13% Similarity=0.077 Sum_probs=173.5
Q ss_pred CCchhHHHHHHHHH-HHHHHHHHHhh-hcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccC
Q 021135 46 VAPVYKYCLVSMSN-ILTTTCQYEAL-KYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFP 123 (317)
Q Consensus 46 ~~~~~~~~~~s~~~-~~~~~~~~~aL-~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~ 123 (317)
+..++.....|... .....+.+.+. ++++.+...++.++.|+++++++.+ +|||++++++++++++++|+.++..++
T Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~ 143 (292)
T PRK11272 65 LRQWLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGG 143 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCc
Confidence 34566667777664 44567888898 8999999999999999999999986 799999999999999999999875431
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhh
Q 021135 124 SGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVY 203 (317)
Q Consensus 124 ~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 203 (317)
+. +.+..|+++.+++.+++|.+++..+|..++ ++.....+...++.+...+.....++... ..
T Consensus 144 ---~~-------~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 206 (292)
T PRK11272 144 ---NL-------SGNPWGAILILIASASWAFGSVWSSRLPLP---VGMMAGAAEMLAAGVVLLIASLLSGERLT----AL 206 (292)
T ss_pred ---cc-------ccchHHHHHHHHHHHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHcCCccc----cc
Confidence 11 234579999999999999999998876432 22344556666666665555433322110 11
Q ss_pred cchHHHHHHHHHHH-HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhh
Q 021135 204 HHLDCFFDVALLST-VATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFF 282 (317)
Q Consensus 204 ~~~~~~~~il~l~~-~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~ 282 (317)
.++..|..++++++ .+.+++.++++++++.++.+++++..++|+++.+++++++||++++.+++|.++++.|+++.+..
T Consensus 207 ~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 207 PTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 23456777778776 46788899999999999999999999999999999999999999999999999999999887765
Q ss_pred ccc
Q 021135 283 KKV 285 (317)
Q Consensus 283 k~~ 285 (317)
++|
T Consensus 287 ~~~ 289 (292)
T PRK11272 287 KYL 289 (292)
T ss_pred Hhh
Confidence 553
No 14
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.91 E-value=1.2e-21 Score=176.19 Aligned_cols=215 Identities=14% Similarity=0.082 Sum_probs=175.0
Q ss_pred CCchhHHHHHHHH-HHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccCC
Q 021135 46 VAPVYKYCLVSMS-NILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPS 124 (317)
Q Consensus 46 ~~~~~~~~~~s~~-~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~~ 124 (317)
+.+++.++..+.. ..+...+.+.|++|++.+...++.++.|+++++++.+++|||++++|+.+++++++|+.++...+
T Consensus 43 ~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~- 121 (260)
T TIGR00950 43 LKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDG- 121 (260)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCC-
Confidence 3456666777665 46667899999999999999999999999999999999999999999999999999999885431
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhc
Q 021135 125 GADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYH 204 (317)
Q Consensus 125 ~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 204 (317)
+ .+.+..|+.+++++.++++.+++..++..++++.++.....+...++.++..+.....++.. ..
T Consensus 122 --~-------~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~ 186 (260)
T TIGR00950 122 --N-------LSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP------QA 186 (260)
T ss_pred --c-------ccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC------Cc
Confidence 1 12456799999999999999999999987766544545444567777777766655443211 11
Q ss_pred chHHHHHHHHHHH-HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHH
Q 021135 205 HLDCFFDVALLST-VATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGAL 276 (317)
Q Consensus 205 ~~~~~~~il~l~~-~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi 276 (317)
++..|..+++++. .+.+++.++++++++.++.+++.+.+++|+++.+++++++||++++.+++|.++++.|+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 187 LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 3445666667765 45789999999999999999999999999999999999999999999999999999886
No 15
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.90 E-value=1.5e-21 Score=179.40 Aligned_cols=207 Identities=7% Similarity=0.035 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccCCCCCCCCCCC
Q 021135 54 LVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSK 133 (317)
Q Consensus 54 ~~s~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~ 133 (317)
..++..+....+.+.|++++|.+...++.++.|+++++++++++|||+++++|++++++++|++++...+ +
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~------~--- 148 (296)
T PRK15430 78 VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTF------G--- 148 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHc------C---
Confidence 3334556668899999999999999999999999999999999999999999999999999999986321 0
Q ss_pred CCCchHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchHH-HHHH
Q 021135 134 GRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDC-FFDV 212 (317)
Q Consensus 134 ~~~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~i 212 (317)
+.. .+.+++.+++|++.+..||..++...+......+...++.+...+. ..... ......+.. +..+
T Consensus 149 --~~~----~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~ 216 (296)
T PRK15430 149 --SLP----IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI--ADSST----SHMGQNPMSLNLLL 216 (296)
T ss_pred --Ccc----HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH--ccCCc----ccccCCcHHHHHHH
Confidence 111 3466678999999988877532111111222223333332221111 11110 001112222 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhh
Q 021135 213 ALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSF 281 (317)
Q Consensus 213 l~l~~~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~ 281 (317)
++.++.+.+++.++++++++.+|.+++++.+++|+++++++++++||++++.+++|+++++.|+.+...
T Consensus 217 ~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~ 285 (296)
T PRK15430 217 IAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM 285 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 334557789999999999999999999999999999999999999999999999999999877655444
No 16
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.88 E-value=6e-20 Score=168.56 Aligned_cols=216 Identities=11% Similarity=0.066 Sum_probs=163.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccCCCC
Q 021135 47 APVYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGA 126 (317)
Q Consensus 47 ~~~~~~~~~s~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~~~~ 126 (317)
..++..+..|+.......+.+.+++|+|.+.+.++.++.|+++++++ +||+... ..+.++++|+.++...+.
T Consensus 69 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~--~~~~i~~~Gv~li~~~~~-- 140 (293)
T PRK10532 69 EQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVDF--VWVVLAVLGLWFLLPLGQ-- 140 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHHH--HHHHHHHHHHheeeecCC--
Confidence 44566777888777778889999999999999999999999998876 3555444 456677899988753211
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcch
Q 021135 127 DLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHL 206 (317)
Q Consensus 127 ~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 206 (317)
+. .+.+.+|+++.+++.+++|.+.+..+|..+++ ++... .+...++.+...+.....+.. ...++
T Consensus 141 ~~------~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~--~~~~~-~~~~~~~~~~l~~~~~~~~~~------~~~~~ 205 (293)
T PRK10532 141 DV------SHVDLTGAALALGAGACWAIYILSGQRAGAEH--GPATV-AIGSLIAALIFVPIGALQAGE------ALWHW 205 (293)
T ss_pred Cc------ccCChHHHHHHHHHHHHHHHHHHHHHHHhccC--CchHH-HHHHHHHHHHHHHHHHHccCc------ccCCH
Confidence 11 12356799999999999999999998886654 33343 455566666555554433220 01233
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhccc
Q 021135 207 DCFFDVALLST-VATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKV 285 (317)
Q Consensus 207 ~~~~~il~l~~-~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k~~ 285 (317)
..|..++++++ ++.+++.++++++++.+|.+++++.+++|+++.+++++++||++++.|++|.+++++|+....+.++|
T Consensus 206 ~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 206 SILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR 285 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44555567766 46678889999999999999999999999999999999999999999999999999998888766543
No 17
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.9e-20 Score=167.62 Aligned_cols=259 Identities=16% Similarity=0.156 Sum_probs=204.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHH
Q 021135 17 LKMIFAVSGIMTTLVIYGILQASRKAIDPVAPVYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLI 96 (317)
Q Consensus 17 ~~~~~~~~gi~~~~~~~g~~qe~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~ 96 (317)
.|-++|++++...-.. |+++.+.- ++...|+++|+++.+++.......+++|+|+|+++++|...|+.+++.+..+
T Consensus 49 ~Q~l~s~~~v~~lk~~-~lv~~~~l---~~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf 124 (314)
T KOG1444|consen 49 LQSLASVLVVLVLKRL-GLVNFRPL---DLRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLF 124 (314)
T ss_pred HHHHHHHHHHHHHHHh-ceeecCCc---ChHHHHHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhh
Confidence 4666777777664433 55543221 1345788999999999999999999999999999999999999999999999
Q ss_pred hccccchhHHHHHHHHHHhHHHhhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHH
Q 021135 97 MQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFY 176 (317)
Q Consensus 97 ~k~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~ 176 (317)
+|+|+++..|.++....+|.......+ . ..+..|+.|++...++.+.+.+..|+..+.-+.+.+++++|
T Consensus 125 ~~~~~~~~v~~Sv~~m~~~s~~~~~~d----~-------sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~y 193 (314)
T KOG1444|consen 125 FGKRPSNKVWASVFAMIIGSVAAAFTD----L-------SFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFY 193 (314)
T ss_pred cCcCchhhHHHHHHHHHHHHHhhcccc----c-------eecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEee
Confidence 999999999999999999987775442 1 35566999999999999999999888776666788999999
Q ss_pred HHHHHHHHHHHHHHHhCchhHHhHhhh---cchHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHH
Q 021135 177 TTLCSCVLSLSGLILEGHLFLAIDFVY---HHLDCFFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLS 253 (317)
Q Consensus 177 ~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~il~l~~~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils 253 (317)
.|+.+.+.+....+..||+. ...+.. ..+..|..+..-++++..-.++.+++.+..||++.++++...+..+.+..
T Consensus 194 Nnl~~L~~l~~~~~~~ge~~-~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ 272 (314)
T KOG1444|consen 194 NNLLSLPPLLILSFITGELD-ALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGG 272 (314)
T ss_pred hhHHHHHHHHHHHHHhcchH-HHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHH
Confidence 99999998888888888765 222211 12334444444456667777899999999999999999977777788888
Q ss_pred HHHhcCCCchhhhhhhhHhHhHHHhhhhhccccCCCCC
Q 021135 254 CVWFRHPLSWEQCIGSIIVFGALYTRSFFKKVSEKPRP 291 (317)
Q Consensus 254 ~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k~~~~~~~~ 291 (317)
.+++|+|+++...+|+.+-+.|=..|++.+.|+++.+|
T Consensus 273 ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~~ 310 (314)
T KOG1444|consen 273 LLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQPP 310 (314)
T ss_pred HhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCCC
Confidence 88888999999999999988766666666665554444
No 18
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.86 E-value=3.1e-19 Score=162.04 Aligned_cols=277 Identities=14% Similarity=0.223 Sum_probs=204.9
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHHHH--HHHHHhccCC-CCCCCchhHHHHHHHHHHHHHHHHHHhhhcCChhHHHHH
Q 021135 5 LITAIGVKDSRVLKMIFAVSGIMTTLVI--YGILQASRKA-IDPVAPVYKYCLVSMSNILTTTCQYEALKYVSFPVQTLA 81 (317)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~gi~~~~~~--~g~~qe~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~aL~~~s~~~~~ll 81 (317)
+.....+.+.|..|+.+|..-++.--.. .+..++..++ ...+....+..+.++.|...+-+.|.++.+++++++++.
T Consensus 45 f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa~iYalqNnl~yval~~ldaatyqVt 124 (345)
T KOG2234|consen 45 FLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPALIYALQNNLQYVALSNLDAATYQVT 124 (345)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhh
Confidence 4445566777888988887543332111 1111111110 111112456788889999998899999999999999999
Q ss_pred hhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccCCCCCCCCC-CCCCCchHHHHHHHHHHHHHhhhhHHHHH
Q 021135 82 KCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPY-SKGRENTVWGVSLMVGYLGFDGFTSTFQD 160 (317)
Q Consensus 82 ~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~-~~~~~~~~~G~~~~l~a~~~~a~~~v~~~ 160 (317)
...+.+.++++..++++||.+++||.++++.++|+.++.....+ ..+++ .....+.+.|....+.+.+.+++.+++.|
T Consensus 125 ~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~-~~~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfE 203 (345)
T KOG2234|consen 125 YQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLS-PTGAKSESSAQNPFLGLVAVLVACFLSGFAGVYFE 203 (345)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCC-CCCccCCCcccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999732111 11111 11235678899999999999999999999
Q ss_pred HHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhC-chhHHhHhhhcch-HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH
Q 021135 161 KLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEG-HLFLAIDFVYHHL-DCFFDVALLSTVATTSQFFISYTIRTFGALTF 238 (317)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~-~~~~~il~l~~~~~~g~~~~~~~l~~~~a~~~ 238 (317)
|++|+-+.+.|........++.++.+......+ +-.....+...+. ..|.. .+..++|.+++...+|+.+...-
T Consensus 204 kiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~v----Vl~~a~gGLlvs~v~KyADnIlK 279 (345)
T KOG2234|consen 204 KILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLV----VLLNAVGGLLVSLVMKYADNILK 279 (345)
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHH----HHHHhccchhHHHHHHHhHHHHH
Confidence 999887888888888888899888877765432 2111122222222 22322 23456777788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhcccc
Q 021135 239 ATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKVS 286 (317)
Q Consensus 239 si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k~~~ 286 (317)
+....+-.+++.+.|+.+||.++|....+|+.+|+.++..|...+.+.
T Consensus 280 ~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 280 GFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred HHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 888888899999999999999999999999999999999998666655
No 19
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.85 E-value=1.3e-19 Score=165.26 Aligned_cols=210 Identities=12% Similarity=0.116 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccCCCCCCCCC
Q 021135 52 YCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPY 131 (317)
Q Consensus 52 ~~~~s~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~ 131 (317)
.+..++.......+.+.++++.+.+...++.++.|+++++++++++|||+++++|++++++++|+.++...+ .+
T Consensus 66 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~----~~-- 139 (281)
T TIGR03340 66 LAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSR----FA-- 139 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccc----cc--
Confidence 344444566678899999999999999999999999999999999999999999999999999999886431 11
Q ss_pred CCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHH-HHHHHH---hCchhHHhHhhhcchH
Q 021135 132 SKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLS-LSGLIL---EGHLFLAIDFVYHHLD 207 (317)
Q Consensus 132 ~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~g~~~~~~~~~~~~~~ 207 (317)
..+..|+.+.+++.++++.+.+..|+..++.+. ......+ ..++.+.. .+.... .++. .....+.
T Consensus 140 ----~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 208 (281)
T TIGR03340 140 ----QHRRKAYAWALAAALGTAIYSLSDKAAALGVPA-FYSALGY-LGIGFLAMGWPFLLLYLKRHGR-----SMFPYAR 208 (281)
T ss_pred ----ccchhHHHHHHHHHHHHHHhhhhccccccchhc-ccccHHH-HHHHHHHHHHHHHHHHHHHhcc-----chhhhHH
Confidence 123358888889999999999877654322211 1111111 22222222 222211 1110 0001122
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHh
Q 021135 208 CFFDVALL-STVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYT 278 (317)
Q Consensus 208 ~~~~il~l-~~~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~ 278 (317)
.+..+++. ++.+.+++.++++++++.++.+++...+++|+++.+++++++||++++.+++|.++++.|+++
T Consensus 209 ~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 209 QILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 33344455 456778999999999999999999999999999999999999999999999999999999864
No 20
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.85 E-value=2.2e-19 Score=159.99 Aligned_cols=221 Identities=16% Similarity=0.272 Sum_probs=175.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccCCCCC
Q 021135 48 PVYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGAD 127 (317)
Q Consensus 48 ~~~~~~~~s~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~ 127 (317)
...++.+.+++|...+.+.+.++++++++++++++.++.+++++++++++|||.+++||+++++.++|+.++..++...+
T Consensus 16 ~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~ 95 (244)
T PF04142_consen 16 DTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSS 95 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccc
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999876543211
Q ss_pred CCCCCC------CCCchHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHh-CchhHHhH
Q 021135 128 LSPYSK------GRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILE-GHLFLAID 200 (317)
Q Consensus 128 ~~~~~~------~~~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~ 200 (317)
.+.... .......|+++++.+.++.|+.+++.||++|+.+.+.+........++.++.++..... ++......
T Consensus 96 ~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g 175 (244)
T PF04142_consen 96 DNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESG 175 (244)
T ss_pred ccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCC
Confidence 010000 12345689999999999999999999999998887888888888889988887765432 21111111
Q ss_pred hhhc-chHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHh
Q 021135 201 FVYH-HLDCFFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIV 272 (317)
Q Consensus 201 ~~~~-~~~~~~~il~l~~~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv 272 (317)
+.+. ++..|. ..+..+++.+.....+|+.+...-+....+..+++.++++++||.++|....+|..+|
T Consensus 176 ~f~G~~~~~~~----~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 176 FFHGYSWWVWI----VIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred chhhcchHHHH----HHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 1111 112222 2335667778888899999999999999999999999999999999999999998764
No 21
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.80 E-value=1e-16 Score=145.40 Aligned_cols=217 Identities=17% Similarity=0.148 Sum_probs=162.5
Q ss_pred chhHHHHHH-HHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHH-HHhccccchhHHHHHHHHHHhHHHhhccCCC
Q 021135 48 PVYKYCLVS-MSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGT-LIMQKRYKGYDYFLALLVTLGCSIFILFPSG 125 (317)
Q Consensus 48 ~~~~~~~~s-~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~-l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~~~ 125 (317)
+++.....+ +.......+.+.++++++.+..+++.++.|+++.++++ +++|||++++++.++++.++|+.++...+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~- 146 (292)
T COG0697 68 PWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGG- 146 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCC-
Confidence 333444444 45566678999999999999999999999999999997 777999999999999999999999975421
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHH-HHHHHHHHHHHHHHHHhCchhHHhHhhhc
Q 021135 126 ADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIF-YTTLCSCVLSLSGLILEGHLFLAIDFVYH 204 (317)
Q Consensus 126 ~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 204 (317)
... .. ...|+.+.+.+.+++|++.+..+++. + .++..... +..........+....... ...
T Consensus 147 ---~~~---~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 209 (292)
T COG0697 147 ---GGG---IL-SLLGLLLALAAALLWALYTALVKRLS-R--LGPVTLALLLQLLLALLLLLLFFLSGFG-------API 209 (292)
T ss_pred ---cch---hH-HHHHHHHHHHHHHHHHHHHHHHHHhc-C--CChHHHHHHHHHHHHHHHHHHHHhcccc-------ccC
Confidence 100 01 46899999999999999999998876 3 23333333 2222111111111111100 112
Q ss_pred chHHHHHHHHHHHHHH-HHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhh
Q 021135 205 HLDCFFDVALLSTVAT-TSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFF 282 (317)
Q Consensus 205 ~~~~~~~il~l~~~~~-~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~ 282 (317)
....|..+.+.++.+. +++.++++++++.++...+++..++|++++++++++++|+++..+++|+++++.|+.+....
T Consensus 210 ~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 210 LSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 2345666666666544 79999999999999999999999999999999999999999999999999999999887766
No 22
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.80 E-value=1.6e-18 Score=153.53 Aligned_cols=232 Identities=15% Similarity=0.201 Sum_probs=185.7
Q ss_pred CCCCCCCchhHHH----HHHHHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhH
Q 021135 41 KAIDPVAPVYKYC----LVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGC 116 (317)
Q Consensus 41 ~~~~~~~~~~~~~----~~s~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv 116 (317)
+|.+.+..|+.|+ +.++...+-..++|.|++|++.+.+++.|++.++++.+++.++.=||+++.-.+.++++.+|+
T Consensus 72 ~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Gl 151 (349)
T KOG1443|consen 72 PRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGL 151 (349)
T ss_pred CccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhe
Confidence 3333456677666 888888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHccCC---CCHHHHHHHHHHHHHHHHHHH-HHHh
Q 021135 117 SIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYD---MEIHNQIFYTTLCSCVLSLSG-LILE 192 (317)
Q Consensus 117 ~l~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~ 192 (317)
++++..+ .+.+..|..++..|.++.|+.-.+.+++.++.+ .+|.+.+++..++..+..+|. +..+
T Consensus 152 flft~Ks-----------Tqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fE 220 (349)
T KOG1443|consen 152 FLFTYKS-----------TQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFE 220 (349)
T ss_pred eEEEecc-----------cceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHc
Confidence 9998762 146788999999999999999888888887764 588899999888888877775 4556
Q ss_pred Cchh----HHhHhhhcchHHHHHHHHHHHHHHHHH---HHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhh
Q 021135 193 GHLF----LAIDFVYHHLDCFFDVALLSTVATTSQ---FFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQ 265 (317)
Q Consensus 193 g~~~----~~~~~~~~~~~~~~~il~l~~~~~~g~---~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~ 265 (317)
|... +.+++. .+...+..+..++.++..+. .+-+..+.+.+..+.++.+..+-+.+.+++.++.++.++..+
T Consensus 221 G~~~~~~s~~f~~~-d~~~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN 299 (349)
T KOG1443|consen 221 GLHLITSSSIFRFQ-DTGLILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLN 299 (349)
T ss_pred ccccchhhhHHHhc-CccHHHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhH
Confidence 5321 222221 11234555555555554444 344556799999999999999999999999999999999999
Q ss_pred hhhhhHhHhHHHhhhhhcc
Q 021135 266 CIGSIIVFGALYTRSFFKK 284 (317)
Q Consensus 266 ~~G~~lv~~Gi~~~~~~k~ 284 (317)
|.|..+...|+.++..+++
T Consensus 300 ~~Gl~i~~agi~~~~~~~~ 318 (349)
T KOG1443|consen 300 WLGLAICLAGILLHRNEPQ 318 (349)
T ss_pred HHHHHHHHHHHHHhccCcc
Confidence 9999999999999855433
No 23
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.79 E-value=3.7e-20 Score=160.87 Aligned_cols=230 Identities=15% Similarity=0.137 Sum_probs=181.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccCC--CC
Q 021135 49 VYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPS--GA 126 (317)
Q Consensus 49 ~~~~~~~s~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~~--~~ 126 (317)
.+.+++++++.+.+....|+|++|.|.+-++++..+.|.++.+++|.++|||++..+.++..+.+.||+++...+= +.
T Consensus 97 R~~LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~ 176 (346)
T KOG4510|consen 97 RKWLILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGD 176 (346)
T ss_pred EEEEEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCC
Confidence 3456788999999999999999999999999999999999999999999999999999999999999999865320 00
Q ss_pred CCCCCC-CCCCchHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcc
Q 021135 127 DLSPYS-KGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHH 205 (317)
Q Consensus 127 ~~~~~~-~~~~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 205 (317)
+.+..+ +..+.+..|-..++.+++.-|-..+..+++-|+ .|..-.+-|..+++.+..++.+..-|++. ++..
T Consensus 177 ~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~--~h~~msvsyf~~i~lV~s~I~~~~ig~~~-----lP~c 249 (346)
T KOG4510|consen 177 TTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKN--AHAIMSVSYFSLITLVVSLIGCASIGAVQ-----LPHC 249 (346)
T ss_pred CccccccccccccCCchHHHHHhHhhhhhHHHHHHHhhcc--ccEEEEehHHHHHHHHHHHHHHhhcccee-----cCcc
Confidence 111111 112445678887888877777777777777554 34445567888888888887764444321 1123
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhccc
Q 021135 206 LDCFFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKV 285 (317)
Q Consensus 206 ~~~~~~il~l~~~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k~~ 285 (317)
...|+..+.+++++.++|++...++++--|...++..++.-+++.++.+++|||.+|++.|.|+++++...++....|..
T Consensus 250 gkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kwa 329 (346)
T KOG4510|consen 250 GKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKWA 329 (346)
T ss_pred ccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHHh
Confidence 34566666679999999999999999999999999999999999999999999999999999999999887766655543
No 24
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.78 E-value=4.9e-17 Score=142.37 Aligned_cols=267 Identities=16% Similarity=0.162 Sum_probs=197.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhcc--CCC---------CCCCchh--HHHHHHHHHHHHHHHHHHhhhcCChhHH
Q 021135 12 KDSRVLKMIFAVSGIMTTLVIYGILQASR--KAI---------DPVAPVY--KYCLVSMSNILTTTCQYEALKYVSFPVQ 78 (317)
Q Consensus 12 ~~~~~~~~~~~~~gi~~~~~~~g~~qe~~--~~~---------~~~~~~~--~~~~~s~~~~~~~~~~~~aL~~~s~~~~ 78 (317)
..+|.+|-+...+|-|.|+..|..+..+. +.. ..+-|++ .+++.+++..++..+.|.+|.+++++.+
T Consensus 36 fqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~Di~gsslm~vgL~lTsASsf 115 (372)
T KOG3912|consen 36 FQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALCDIAGSSLMYVGLNLTSASSF 115 (372)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHHHHhhhHHHHHHHHHhhHHHH
Confidence 56788999999999999999988775421 100 0112444 3566889999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHhhhhHHH
Q 021135 79 TLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTF 158 (317)
Q Consensus 79 ~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~ 158 (317)
+++|....++|.+++..+++++++.+||+++..+..|++++...|...+..+. .+.++...|+++++.+.+.-|...++
T Consensus 116 QMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~-~d~s~iitGdllIiiaqiivaiQ~v~ 194 (372)
T KOG3912|consen 116 QMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPY-TDYSSIITGDLLIIIAQIIVAIQMVC 194 (372)
T ss_pred HHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCc-cccccchhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998655321111111 11245567999999999999999999
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHHHHHHH----HHHH-hCc---------hh---HHhHhhhcchHHHHHHHHHHHHHHH
Q 021135 159 QDKLFKGYDMEIHNQIFYTTLCSCVLSLS----GLIL-EGH---------LF---LAIDFVYHHLDCFFDVALLSTVATT 221 (317)
Q Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~g~---------~~---~~~~~~~~~~~~~~~il~l~~~~~~ 221 (317)
.||..++++++|.+...|..+++.++... ...+ .++ +. +.+.-...+|.... ...+....+
T Consensus 195 Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~v--al~~~~vSi 272 (372)
T KOG3912|consen 195 EEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQESPSLAV--ALIGFTVSI 272 (372)
T ss_pred HHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcCCchhHH--HHhhhhhhe
Confidence 99999999999999999999888554322 2111 221 11 11111222232221 111221112
Q ss_pred HH--HHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhh
Q 021135 222 SQ--FFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSF 281 (317)
Q Consensus 222 g~--~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~ 281 (317)
+. ..-.+..|..++++-.+.-.+|..+-.++++....|.+...|+.|.++.+.|+..|+-
T Consensus 273 AffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~ 334 (372)
T KOG3912|consen 273 AFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQ 334 (372)
T ss_pred eeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1222346899999999999999999999999999999999999999999999876654
No 25
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.75 E-value=1.3e-17 Score=146.97 Aligned_cols=204 Identities=19% Similarity=0.212 Sum_probs=147.1
Q ss_pred CChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccCCCC-------------CCCCC---CCCCC
Q 021135 73 VSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGA-------------DLSPY---SKGRE 136 (317)
Q Consensus 73 ~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~~~~-------------~~~~~---~~~~~ 136 (317)
+++|.++++|+++++++|+.++...+||++..|+++.++...|+......+.+. +.+.. ....+
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 578999999999999999999999999999999999999999988643321100 00000 00114
Q ss_pred chHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHH-hCchhHHhHhhhcchHHHHHHHHH
Q 021135 137 NTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLIL-EGHLFLAIDFVYHHLDCFFDVALL 215 (317)
Q Consensus 137 ~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~il~l 215 (317)
..+.|..+.+.+.+++++.++++|+.+|+++...+..++....++.+........ .++......+...+|...+. +
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 158 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWI---V 158 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHH---H
Confidence 5678999999999999999999999877554443444444444444432222222 12222222222233333222 2
Q ss_pred HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhh
Q 021135 216 STVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTR 279 (317)
Q Consensus 216 ~~~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~ 279 (317)
.+.++.++.++.+++|+.++.+.++++++|++++.++|+++|||++++.+|+|+.+++.|+++|
T Consensus 159 ~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 159 GLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 4557788899999999999999999999999999999999999999999999999999987653
No 26
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.75 E-value=2.6e-17 Score=139.75 Aligned_cols=262 Identities=13% Similarity=0.155 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHH
Q 021135 17 LKMIFAVSGIMTTLVIYGILQASRKAIDPVAPVYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLI 96 (317)
Q Consensus 17 ~~~~~~~~gi~~~~~~~g~~qe~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~ 96 (317)
.|-+.|+.|+.+--. .|+.. .| ....++|+++++..+...+....+|+|+++|.++++|....+.++..+..+
T Consensus 43 vQSlvcvv~l~iLk~-l~~~~-fR-----~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~ 115 (309)
T COG5070 43 VQSLVCVVGLLILKF-LRLVE-FR-----LTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLF 115 (309)
T ss_pred HHHHHHHHHHHHHHH-HhHhh-ee-----hhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHH
Confidence 455566666655222 24432 11 245778899999999888999999999999999999999999999999999
Q ss_pred hccccchhHHHHHHHHHHhHHHhhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHH
Q 021135 97 MQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFY 176 (317)
Q Consensus 97 ~k~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~ 176 (317)
+|+|.+..+..+-++.++.-+...++|. +...-....-..|++|+....+..+.+....++..+-.+...++-|+|
T Consensus 116 Fgg~vtsl~l~SFilMvlSS~va~w~D~----q~~~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfY 191 (309)
T COG5070 116 FGGRVTSLELLSFILMVLSSVVATWGDQ----QASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFY 191 (309)
T ss_pred hcCccchhhHHHHHHHHHHHHHhccchh----hHHHHHhcccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHH
Confidence 9999999999999999998888877642 110000012234999998888887777666555443334456788999
Q ss_pred HHHHHHHHHHHHHHHhCchhHHhHhhh-cchHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHH
Q 021135 177 TTLCSCVLSLSGLILEGHLFLAIDFVY-HHLDCFFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCV 255 (317)
Q Consensus 177 ~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~il~l~~~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l 255 (317)
.|+.+.++.+...+...+..+. +... ..+.....+..-++++..-.++-.++++..++++.++++.+.+.-..+.+.+
T Consensus 192 nNllslPiL~~~s~~~edws~~-n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlv 270 (309)
T COG5070 192 NNLLSLPILLSFSFLFEDWSPG-NLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLV 270 (309)
T ss_pred hhhHHHHHHHHHHHHhccCCcc-hhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhh
Confidence 9999999887775554443221 1111 2234444444446666666677778999999999999999999999999999
Q ss_pred HhcCCCchhhhhhhhHhHhHHHhhhhhccccCCCC
Q 021135 256 WFRHPLSWEQCIGSIIVFGALYTRSFFKKVSEKPR 290 (317)
Q Consensus 256 ~f~e~~t~~~~~G~~lv~~Gi~~~~~~k~~~~~~~ 290 (317)
+||+|.+...+..+.+-+..=.+|.+.|.+|++++
T Consensus 271 ffdap~nf~si~sillGflsg~iYavaks~k~q~q 305 (309)
T COG5070 271 FFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQNQ 305 (309)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999997754344555555444433
No 27
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.74 E-value=1.1e-15 Score=137.56 Aligned_cols=183 Identities=9% Similarity=0.012 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccCCCCCCCC
Q 021135 51 KYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSP 130 (317)
Q Consensus 51 ~~~~~s~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~ 130 (317)
.+...++.......+.+.|++|++.+.++++.++.|+++++++++++|||++++++++++++++|++++...+ .
T Consensus 72 ~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~-----~- 145 (256)
T TIGR00688 72 SLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLK-----G- 145 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHc-----C-
Confidence 3566677777778999999999999999999999999999999999999999999999999999999875431 0
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcch-HHH
Q 021135 131 YSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHL-DCF 209 (317)
Q Consensus 131 ~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~ 209 (317)
+.. .+++++.+++|.+.+..||..++ +..+... ......+...+.....+.. . ....++ ..|
T Consensus 146 -----~~~----~~~l~aa~~~a~~~i~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~ 208 (256)
T TIGR00688 146 -----SLP----WEALVLAFSFTAYGLIRKALKNT---DLAGFCL-ETLSLMPVAIYYLLQTDFA-T---VQQTNPFPIW 208 (256)
T ss_pred -----Cch----HHHHHHHHHHHHHHHHHhhcCCC---CcchHHH-HHHHHHHHHHHHHHHhccC-c---ccccCchhHH
Confidence 111 24567889999999998876432 2222221 1122222222211111110 0 001122 356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHH
Q 021135 210 FDVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVW 256 (317)
Q Consensus 210 ~~il~l~~~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~ 256 (317)
..++++++++.+++.++++++|+.+|.+++++.+++|+++.++++++
T Consensus 209 ~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 209 LLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 66777777788999999999999999999999999999999999764
No 28
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.68 E-value=2e-14 Score=131.77 Aligned_cols=210 Identities=10% Similarity=0.107 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHHHhhhcCChhHHHHHhh-cchHHHHHHHHHHhccccchhH----HHHHHHHHHhHHHhhccCCCCCCCC
Q 021135 56 SMSNILTTTCQYEALKYVSFPVQTLAKC-AKMIPVMIWGTLIMQKRYKGYD----YFLALLVTLGCSIFILFPSGADLSP 130 (317)
Q Consensus 56 s~~~~~~~~~~~~aL~~~s~~~~~ll~s-~~pi~v~i~~~l~~k~~~~~~~----~~~~~l~~~Gv~l~~~~~~~~~~~~ 130 (317)
|+....++.+.+.|.++++++.+..+.+ ..++++++++.+++|||.++++ +++++++++|++++...+.+ +.+
T Consensus 66 G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~-~~~- 143 (290)
T TIGR00776 66 GAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDK-SAG- 143 (290)
T ss_pred HHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecccc-ccc-
Confidence 3446667799999999999999877777 7888999999999999999999 99999999999888654211 110
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHH----HHHHHHHHHHHHhCchhHHhHhhhcch
Q 021135 131 YSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTL----CSCVLSLSGLILEGHLFLAIDFVYHHL 206 (317)
Q Consensus 131 ~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~ 206 (317)
.++..+...|+++.+++.++++.+.+..++. + .++++..+.+.. .+.++..+. ... .. . ...
T Consensus 144 -~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~--~~~~~~~~~~~~g~~~~~~~~~~~~---~~~--~~--~--~~~ 209 (290)
T TIGR00776 144 -IKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--G--VDGLSVLLPQAIGMVIGGIIFNLGH---ILA--KP--L--KKY 209 (290)
T ss_pred -cccccchhhHHHHHHHHHHHHHHHHHHHHHc--C--CCcceehhHHHHHHHHHHHHHHHHH---hcc--cc--h--HHH
Confidence 0000223569999999999999999888754 2 355555333322 222222111 000 00 0 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhh----hhhhHhHhHHHhhhh
Q 021135 207 DCFFDVALLSTVATTSQFFISYTIR-TFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQC----IGSIIVFGALYTRSF 281 (317)
Q Consensus 207 ~~~~~il~l~~~~~~g~~~~~~~l~-~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~----~G~~lv~~Gi~~~~~ 281 (317)
..|..++ .++...+++.+++...+ +.++.+++++.+.+|+.+.+++++++||+.++.|+ +|.++++.|+.+...
T Consensus 210 ~~~~~~~-~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 210 AILLNIL-PGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 2333333 56666788888888888 99999999999999999999999999999999999 999999999887655
Q ss_pred h
Q 021135 282 F 282 (317)
Q Consensus 282 ~ 282 (317)
.
T Consensus 289 ~ 289 (290)
T TIGR00776 289 G 289 (290)
T ss_pred c
Confidence 4
No 29
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=3.7e-17 Score=142.74 Aligned_cols=232 Identities=16% Similarity=0.163 Sum_probs=186.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccCCCCCC
Q 021135 49 VYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADL 128 (317)
Q Consensus 49 ~~~~~~~s~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~ 128 (317)
.++..+.++.+.+...+.|+.|+|++++.+.+-|+...+|+.++.++++|+|-+..-..++.++++|-.+=. |.
T Consensus 102 ~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGv------dq 175 (347)
T KOG1442|consen 102 ARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGV------DQ 175 (347)
T ss_pred HHhhcchhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheecc------cc
Confidence 467899999999999999999999999999999999999999999999999999999999998888843321 11
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhc-chH
Q 021135 129 SPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYH-HLD 207 (317)
Q Consensus 129 ~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~ 207 (317)
++. .+..++.|.++...|.++-|+..++.+|.....+...|.+.+|+|..++++.+|.+.+.|++.+.+.+.+. ...
T Consensus 176 E~~--~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~ 253 (347)
T KOG1442|consen 176 EGS--TGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIK 253 (347)
T ss_pred ccc--cCccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHH
Confidence 111 13567889999999999999999998877665666789999999999999999999999998776665332 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhccccC
Q 021135 208 CFFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKVSE 287 (317)
Q Consensus 208 ~~~~il~l~~~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k~~~~ 287 (317)
.|..+.+-++++..-.+.-.+-+|..+|.|..+-++.|-....++++.+++|.-+..-|-|-.++++|-..|.+.|+++.
T Consensus 254 Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em 333 (347)
T KOG1442|consen 254 FWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEM 333 (347)
T ss_pred HHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHH
Confidence 33322222334332222223348999999999999999999999999999999999999999999999888888776554
Q ss_pred C
Q 021135 288 K 288 (317)
Q Consensus 288 ~ 288 (317)
+
T Consensus 334 ~ 334 (347)
T KOG1442|consen 334 R 334 (347)
T ss_pred H
Confidence 3
No 30
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.66 E-value=1.6e-15 Score=137.93 Aligned_cols=224 Identities=12% Similarity=0.052 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccCCCCCCCCCCCCCC
Q 021135 57 MSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRE 136 (317)
Q Consensus 57 ~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~ 136 (317)
...+.++...|.||.|++++..+++.++.-+|+..++.++..+|+++.|.+++++.+.||++++.+++. .. ++....
T Consensus 167 ~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~--~~-~~~~a~ 243 (416)
T KOG2765|consen 167 PLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSK--QN-SDLPAS 243 (416)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccc--cc-ccCCcc
Confidence 345677889999999999999999999999999999999999999999999999999999999877531 11 111235
Q ss_pred chHHHHHHHHHHHHHhhhhHHHHHHHHccC--CCCHHHHHHHHHHHHHHHHHHHHHHhC-chhHHhHhhhcchHHHHHHH
Q 021135 137 NTVWGVSLMVGYLGFDGFTSTFQDKLFKGY--DMEIHNQIFYTTLCSCVLSLSGLILEG-HLFLAIDFVYHHLDCFFDVA 213 (317)
Q Consensus 137 ~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~il 213 (317)
....|.++++++++.||+|.++.+|-..+. +++.....-|..++..++..|.+++-. -..+.++. .+......++
T Consensus 244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~l--P~~~q~~~vv 321 (416)
T KOG2765|consen 244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFEL--PSSTQFSLVV 321 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccC--CCCceeEeee
Confidence 668899999999999999999988765555 345444445677788777776543211 11111111 1111122233
Q ss_pred HHH-HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhccc
Q 021135 214 LLS-TVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKV 285 (317)
Q Consensus 214 ~l~-~~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k~~ 285 (317)
..+ +.+.+.-++|..+.--.+|+++++-+++....+++.+.++-++++|+.+++|...|++|.+..++..+.
T Consensus 322 ~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~ 394 (416)
T KOG2765|consen 322 FNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSEN 394 (416)
T ss_pred HhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccc
Confidence 333 345677799999999999999999999999999999999999999999999999999998887776543
No 31
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.61 E-value=3.5e-14 Score=117.51 Aligned_cols=141 Identities=20% Similarity=0.294 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHcc-----CCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHh--hhc-----chHH
Q 021135 141 GVSLMVGYLGFDGFTSTFQDKLFKG-----YDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDF--VYH-----HLDC 208 (317)
Q Consensus 141 G~~~~l~a~~~~a~~~v~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~-----~~~~ 208 (317)
|+++++.|.++.|++.++.|++.++ .+.++.++++|+++.++++.+|..+..++....... ... .+..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 7889999999999999999999887 578999999999999999999876554432211111 111 2234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhh
Q 021135 209 FFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSF 281 (317)
Q Consensus 209 ~~~il~l~~~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~ 281 (317)
+..++..++.+...+++.+.++++.+|++.++.+++|.++.+++|+++|||++|+.+++|+++.+.|.+.|+|
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 4444444666777888999999999999999999999999999999999999999999999999999988764
No 32
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.57 E-value=3.4e-16 Score=135.47 Aligned_cols=224 Identities=17% Similarity=0.190 Sum_probs=171.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccCCC
Q 021135 46 VAPVYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSG 125 (317)
Q Consensus 46 ~~~~~~~~~~s~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~~~ 125 (317)
+..|+.|++.++..+-++++--.|.||++....+++.+-..+.+++++|+++|.||.+.|+.+++++.+|++++...|..
T Consensus 75 ~~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~ 154 (336)
T KOG2766|consen 75 KAKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVH 154 (336)
T ss_pred HHHHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeec
Confidence 35688899999888888888889999999999999999999999999999999999999999999999999998776431
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcc
Q 021135 126 ADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHH 205 (317)
Q Consensus 126 ~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 205 (317)
. .+..++++...|+.+++.++-++|+.++.+|.+.|| .+..++|....+++++++.+-.+.+..-.. . .+
T Consensus 155 a---gd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn--~d~~elm~~lgLfGaIIsaIQ~i~~~~~~~---t--l~ 224 (336)
T KOG2766|consen 155 A---GDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKN--ADRVELMGFLGLFGAIISAIQFIFERHHVS---T--LH 224 (336)
T ss_pred c---ccccCCCCCccCcEEEEecceeeeeccccHHHHHhc--CcHHHHHHHHHHHHHHHHHHHHhhhcccee---e--Ee
Confidence 1 111234566789999999999999999999999884 578899999999999988775433321100 0 11
Q ss_pred hHHHHHHHHHHHHHHHHHH----HHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhh
Q 021135 206 LDCFFDVALLSTVATTSQF----FISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSF 281 (317)
Q Consensus 206 ~~~~~~il~l~~~~~~g~~----~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~ 281 (317)
+ .|-...++. .++... +.-..+|..|++..++-..+....++++ -.||-+.+|...+..+.+..|++++..
T Consensus 225 w-~~~i~~yl~--f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~ 299 (336)
T KOG2766|consen 225 W-DSAIFLYLR--FALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYST 299 (336)
T ss_pred e-hHHHHHHHH--HHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeec
Confidence 1 122222222 222222 2222568899999998888889999888 789999999999999999999888755
Q ss_pred hcc
Q 021135 282 FKK 284 (317)
Q Consensus 282 ~k~ 284 (317)
..+
T Consensus 300 re~ 302 (336)
T KOG2766|consen 300 REK 302 (336)
T ss_pred ccc
Confidence 433
No 33
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.57 E-value=2.7e-12 Score=111.47 Aligned_cols=218 Identities=11% Similarity=0.069 Sum_probs=161.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccCCC
Q 021135 46 VAPVYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSG 125 (317)
Q Consensus 46 ~~~~~~~~~~s~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~~~ 125 (317)
+..|+..+..|.+....+.+.|.|++.+|.++++-+.++-|+.+.+++ .|| .++.+-+.+.+.|+.+......
T Consensus 68 ~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~----sRr--~~d~vwvaLAvlGi~lL~p~~~- 140 (292)
T COG5006 68 KPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLS----SRR--LRDFVWVALAVLGIWLLLPLGQ- 140 (292)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHHh----ccc--hhhHHHHHHHHHHHHhheeccC-
Confidence 456778889999999899999999999999999999999998887764 344 3455556667888887754321
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcc
Q 021135 126 ADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHH 205 (317)
Q Consensus 126 ~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 205 (317)
+. ...+..|..+++.+..||+.|-+..+|.-+. .+.-.-+..-..++.++.+|.-+...+. .+ .+
T Consensus 141 -~~------~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~--~~g~~g~a~gm~vAaviv~Pig~~~ag~----~l--~~ 205 (292)
T COG5006 141 -SV------WSLDPVGVALALGAGACWALYIVLGQRAGRA--EHGTAGVAVGMLVAALIVLPIGAAQAGP----AL--FS 205 (292)
T ss_pred -Cc------CcCCHHHHHHHHHHhHHHHHHHHHcchhccc--CCCchHHHHHHHHHHHHHhhhhhhhcch----hh--cC
Confidence 11 2567899999999999999999998887531 2222334455567777777764432221 11 34
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhcc
Q 021135 206 LDCFFDVALLST-VATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKK 284 (317)
Q Consensus 206 ~~~~~~il~l~~-~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k~ 284 (317)
|.....-+..++ .+++-+.+=..++++.++.++++...++|.++.+.+++++||.+|+.||+|+++|+.+..-..+..|
T Consensus 206 p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~ 285 (292)
T COG5006 206 PSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTAR 285 (292)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccC
Confidence 555444444454 3556776777789999999999999999999999999999999999999999999987765554444
Q ss_pred c
Q 021135 285 V 285 (317)
Q Consensus 285 ~ 285 (317)
|
T Consensus 286 ~ 286 (292)
T COG5006 286 K 286 (292)
T ss_pred C
Confidence 3
No 34
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.55 E-value=3.6e-12 Score=113.22 Aligned_cols=212 Identities=13% Similarity=0.083 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccCCCCCCCCC
Q 021135 52 YCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPY 131 (317)
Q Consensus 52 ~~~~s~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~ 131 (317)
+...++.-..+.+....|.++-..-.+.+-....|++.++++.+++|||+++-||++++++.+||..-....
T Consensus 75 ~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~-------- 146 (293)
T COG2962 75 LALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL-------- 146 (293)
T ss_pred HHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc--------
Confidence 333444444445566677777565567788889999999999999999999999999999999999887641
Q ss_pred CCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhh-cchHHHH
Q 021135 132 SKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVY-HHLDCFF 210 (317)
Q Consensus 132 ~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~ 210 (317)
++..+..+.++ +.+++|...- |+.+.++.+-+..-..+-.+..+...+..++-.+ +.. .++..+.
T Consensus 147 ---g~lpwval~la----~sf~~Ygl~R----K~~~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~---~~~~~~~~~~~ 212 (293)
T COG2962 147 ---GSLPWVALALA----LSFGLYGLLR----KKLKVDALTGLTLETLLLLPVALIYLLFLADSGQ---FLQQNANSLWL 212 (293)
T ss_pred ---CCCcHHHHHHH----HHHHHHHHHH----HhcCCchHHhHHHHHHHHhHHHHHHHHHHhcCch---hhhcCCchHHH
Confidence 13455555544 4567777554 3345566555554444444444444332221111 222 3455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhccc
Q 021135 211 DVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKV 285 (317)
Q Consensus 211 ~il~l~~~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k~~ 285 (317)
.+...|..+++.-.++..+-|+.+=.+.++..+.+|..-.+++++++||+++..+.+..+++-.|+.++..+.-+
T Consensus 213 LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~ 287 (293)
T COG2962 213 LLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLY 287 (293)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666668888999889999999999999999999999999999999999999999999999999999888776543
No 35
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.16 E-value=4.8e-10 Score=88.73 Aligned_cols=124 Identities=18% Similarity=0.227 Sum_probs=96.9
Q ss_pred HHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchHHHHHHHHHHHH-HHHHHHHHHH
Q 021135 150 GFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTV-ATTSQFFISY 228 (317)
Q Consensus 150 ~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~il~l~~~-~~~g~~~~~~ 228 (317)
+++|.+.+..++..++ .++....++....+.+ .++.....+... ....++..+...++.+.. +.+++.++++
T Consensus 1 ~~~a~~~~~~k~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK--ISPLSITFWRFLIAGI-LLILLLILGRKP----FKNLSPRQWLWLLFLGLLGTALAYLLYFY 73 (126)
T ss_pred ceeeeHHHHHHHHhcc--CCHHHHHHHHHHHHHH-HHHHHHhhcccc----ccCCChhhhhhhhHhhccceehHHHHHHH
Confidence 3678888888888775 5788888888888876 444443322211 112334455556666654 6889999999
Q ss_pred HHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhh
Q 021135 229 TIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRS 280 (317)
Q Consensus 229 ~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~ 280 (317)
++++.++..++++..++|+++.++++++++|++++.+++|+.+++.|+++..
T Consensus 74 a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 74 ALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987654
No 36
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.15 E-value=2.1e-10 Score=89.78 Aligned_cols=134 Identities=14% Similarity=0.132 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchHHHHHHHHHHHHHHH
Q 021135 142 VSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVATT 221 (317)
Q Consensus 142 ~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~il~l~~~~~~ 221 (317)
.++++++++++++..++.|.-.+ +.||.-..+--+.....+....++..|+.+..-+ .++..|..+..-++.+..
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~--~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~---~~~k~~lflilSGla~gl 79 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLE--GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGE---IGPKSWLFLILSGLAGGL 79 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHHHHHHHHhcCceecccc---cCcceehhhhHHHHHHHH
Confidence 46778899999999888765555 3455555555666666666666667776433211 245667766666777888
Q ss_pred HHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhh
Q 021135 222 SQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRS 280 (317)
Q Consensus 222 g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~ 280 (317)
+-+++|+++++-.+.....+.-+.+++++++|++++||++|..+|+|+++|.+|..+..
T Consensus 80 swl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 80 SWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 88999999999999999999999999999999999999999999999999999976543
No 37
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.97 E-value=3.3e-07 Score=82.12 Aligned_cols=249 Identities=10% Similarity=0.086 Sum_probs=162.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-CCchhHHHHHHHHHHHHHHHHHHhhhcCChhHHH-HHhhcchHH
Q 021135 11 VKDSRVLKMIFAVSGIMTTLVIYGILQASRKAIDP-VAPVYKYCLVSMSNILTTTCQYEALKYVSFPVQT-LAKCAKMIP 88 (317)
Q Consensus 11 ~~~~~~~~~~~~~~gi~~~~~~~g~~qe~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~aL~~~s~~~~~-ll~s~~pi~ 88 (317)
+..+|..|.+-...|-...-+....+ .+..... ...+..-++.|++...+...++.|.+++.++..+ +-.....+.
T Consensus 8 ~gG~~~~Q~lG~t~Gali~alv~~~~--~~p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg 85 (269)
T PF06800_consen 8 IGGKPANQILGTTIGALIFALVVFLF--RQPAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVG 85 (269)
T ss_pred eCCcHHHHHHHHHHHHHHHHHHHHHH--hCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHH
Confidence 34566777766666655543333333 1111110 1233444666778888899999999987766442 333455677
Q ss_pred HHHHHHHHhccccchhHHH----HHHHHHHhHHHhhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHc
Q 021135 89 VMIWGTLIMQKRYKGYDYF----LALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFK 164 (317)
Q Consensus 89 v~i~~~l~~k~~~~~~~~~----~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~l~~ 164 (317)
+.+++.++++|.-+.++++ +++++++|+.+-...+.+++ +.++..+..-|+..++++.+.+..|.+..+.
T Consensus 86 ~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~---~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~--- 159 (269)
T PF06800_consen 86 TSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSD---KSSSKSNMKKGILALLISTIGYWIYSVIPKA--- 159 (269)
T ss_pred HHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccccccc---ccccccchhhHHHHHHHHHHHHHHHHHHHHh---
Confidence 8899999999999888765 88889999988876642111 1111234556999999999999999887643
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHH-HHHHhCchhHHhHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Q 021135 165 GYDMEIHNQIFYTTLCSCVLSLS-GLILEGHLFLAIDFVYHHLDCFFDVALLSTVATTSQFFISYTIRTFGALTFATIMT 243 (317)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~il~l~~~~~~g~~~~~~~l~~~~a~~~si~~~ 243 (317)
.+.++++..+-+. ++.++... ....... .+ .+...|..+ .-++.=.+|+++++.+.++.+..+.=.++.
T Consensus 160 -~~~~~~~~~lPqa-iGm~i~a~i~~~~~~~-----~~--~~k~~~~ni-l~G~~w~ignl~~~is~~~~G~a~af~lSQ 229 (269)
T PF06800_consen 160 -FHVSGWSAFLPQA-IGMLIGAFIFNLFSKK-----PF--FEKKSWKNI-LTGLIWGIGNLFYLISAQKNGVATAFTLSQ 229 (269)
T ss_pred -cCCChhHhHHHHH-HHHHHHHHHHhhcccc-----cc--cccchHHhh-HHHHHHHHHHHHHHHhHHhccchhhhhHHh
Confidence 2467777665443 33333322 2222211 01 122344433 224445678888889999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCchhh----hhhhhHhHhHHH
Q 021135 244 TRQLVSIVLSCVWFRHPLSWEQ----CIGSIIVFGALY 277 (317)
Q Consensus 244 ~~~v~aiils~l~f~e~~t~~~----~~G~~lv~~Gi~ 277 (317)
+..+++.+.++++++|+=+..+ ++|.++++.|..
T Consensus 230 ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 230 LGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred HHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 9999999999999999888664 567777776643
No 38
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.90 E-value=1.6e-07 Score=86.38 Aligned_cols=140 Identities=11% Similarity=0.111 Sum_probs=104.9
Q ss_pred chHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchHHHHHHHHHH
Q 021135 137 NTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLS 216 (317)
Q Consensus 137 ~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~il~l~ 216 (317)
+...|.++++++.++++...+..+.. . +.++.+..++...++.++.++.....++.....+. ..++..+...+.-+
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~--~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-Y--YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTL-IQTPQKIFMLAVSA 80 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-c--CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH-HcCHHHHHHHHHHH
Confidence 45679999999999999999888543 3 46899999999999988766665444332111110 11233322222213
Q ss_pred HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhh
Q 021135 217 TVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRS 280 (317)
Q Consensus 217 ~~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~ 280 (317)
+.....+.++++++++.++..++++..+.|+++.++++++++|+++..+|+|+++.+.|+.+..
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 3445667899999999999999999999999999999999999999999999999999977543
No 39
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.88 E-value=6.3e-09 Score=87.52 Aligned_cols=223 Identities=11% Similarity=0.097 Sum_probs=154.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccCCCCCCC
Q 021135 50 YKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLS 129 (317)
Q Consensus 50 ~~~~~~s~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~ 129 (317)
++..+.+++..++++.+-.+|+.++.+.++-+.+|.--++.+++++++|.|+...++++.++...|++++.+.|+ +
T Consensus 54 ~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN--~-- 129 (290)
T KOG4314|consen 54 IRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN--E-- 129 (290)
T ss_pred eeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc--h--
Confidence 344566677788899999999999999999999999999999999999999999999999999999999876632 1
Q ss_pred CCCCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHccCCC-CHHHHHHHHHHHHHH-HHHHHHH--HhCchhHHhHhhhcc
Q 021135 130 PYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDM-EIHNQIFYTTLCSCV-LSLSGLI--LEGHLFLAIDFVYHH 205 (317)
Q Consensus 130 ~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~--~~g~~~~~~~~~~~~ 205 (317)
-...+.|+.++..++++.|+|-+..++...+.+. +.-..|-....+..+ ...|.++ +++ .+.++.....
T Consensus 130 -----~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~--VE~~qsFA~~ 202 (290)
T KOG4314|consen 130 -----HADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTG--VEHLQSFAAA 202 (290)
T ss_pred -----hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhc--hHHHHHHhhC
Confidence 1457899999999999999999999887654332 122222222222222 2233322 233 1222211111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhccc
Q 021135 206 LDCFFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKV 285 (317)
Q Consensus 206 ~~~~~~il~l~~~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k~~ 285 (317)
.|..+...+..+.--+..++..+....|...|+-+......-....+++-+-..+.....|..++..|..+...+..|
T Consensus 203 --PWG~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d~ 280 (290)
T KOG4314|consen 203 --PWGCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPEDK 280 (290)
T ss_pred --CchhhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccch
Confidence 244333222222222234555677777888887777777777788888777789999999999999998776655443
No 40
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.86 E-value=2.8e-08 Score=78.17 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=66.4
Q ss_pred CchhHHHHHHHHHH-HHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccC
Q 021135 47 APVYKYCLVSMSNI-LTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFP 123 (317)
Q Consensus 47 ~~~~~~~~~s~~~~-~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~ 123 (317)
.++......++... .+..+.+.|++|.+ +....+.++.|+++++++++++|||++++++++++++++|++++...+
T Consensus 32 ~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 32 KPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 45666666677655 77889999999999 577799999999999999999999999999999999999999997763
No 41
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.85 E-value=2.3e-07 Score=83.41 Aligned_cols=136 Identities=13% Similarity=0.111 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhh-cch-HHHHHHHHHHHH
Q 021135 141 GVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVY-HHL-DCFFDVALLSTV 218 (317)
Q Consensus 141 G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~-~~~~~il~l~~~ 218 (317)
|.++++++.++++...+..|. .. +.++.+..++-..++.++..+.....++.....+..+ ... +.+..+...++.
T Consensus 3 g~~~~i~a~~~wg~~~~~~k~-~~--~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYYYSKL-LK--PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHH-hc--cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 888999999999999988875 33 4789999999999998776665543332111001111 111 122223333555
Q ss_pred HHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhh
Q 021135 219 ATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTR 279 (317)
Q Consensus 219 ~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~ 279 (317)
....+.++++++++.++..++++..+.|+++.++++++++|+++..+|+|.++.++|+.+.
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li 140 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISN 140 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 5677789999999999999999999999999999999999999999999999999997654
No 42
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.76 E-value=7.7e-08 Score=88.46 Aligned_cols=221 Identities=15% Similarity=0.217 Sum_probs=122.6
Q ss_pred HHHHHH-HHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccCCCCCCCC
Q 021135 52 YCLVSM-SNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSP 130 (317)
Q Consensus 52 ~~~~s~-~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~ 130 (317)
..+.|+ .+..+..+++.|+.+.|.+..+=+.+...++.++++..++|||++++++.|++++++|..++....+. +.+.
T Consensus 52 ~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~-~~~~ 130 (300)
T PF05653_consen 52 LWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPK-EEPI 130 (300)
T ss_pred HHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCC-CCCc
Confidence 344454 44566789999999999999888899999999999999999999999999999999999876543211 1110
Q ss_pred CCCCCCchH------HH---HHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHH---HhCchhHH
Q 021135 131 YSKGRENTV------WG---VSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLI---LEGHLFLA 198 (317)
Q Consensus 131 ~~~~~~~~~------~G---~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~ 198 (317)
. +..+. .+ +........ ....-...++++. .+.+.|....+.+-+.-.+. ...-+.+.
T Consensus 131 ~---t~~~l~~~~~~~~fl~y~~~~~~~~-----~~L~~~~~~r~g~--~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~ 200 (300)
T PF05653_consen 131 H---TLDELIALLSQPGFLVYFILVLVLI-----LILIFFIKPRYGR--RNILVYISICSLIGSFTVLSAKAISILIKLT 200 (300)
T ss_pred C---CHHHHHHHhcCcceehhHHHHHHHH-----HHHHHhhcchhcc--cceEEEEEEeccccchhhhHHHHHHHHHHHH
Confidence 0 00111 11 111111111 1111111122221 11222322222111100000 00000000
Q ss_pred h--HhhhcchHHHHHHHHHHHHHHHHH-HHHHHHHHhhChHHHHHHHHH-HHHHHHHHHHHHhcC--CCchhhh----hh
Q 021135 199 I--DFVYHHLDCFFDVALLSTVATTSQ-FFISYTIRTFGALTFATIMTT-RQLVSIVLSCVWFRH--PLSWEQC----IG 268 (317)
Q Consensus 199 ~--~~~~~~~~~~~~il~l~~~~~~g~-~~~~~~l~~~~a~~~si~~~~-~~v~aiils~l~f~e--~~t~~~~----~G 268 (317)
+ +..-.+|..|..++.+ +.+.+.| .+.+.++++++++...++... -...+++-|.++|+| .+++.++ .|
T Consensus 201 ~~g~~~f~~~~~y~l~~~~-v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G 279 (300)
T PF05653_consen 201 FSGDNQFTYPLTYLLLLVL-VVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCG 279 (300)
T ss_pred hcCchhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence 0 0011345555444333 3455666 577789999998876655544 556777888888987 4666554 55
Q ss_pred hhHhHhHHHhhhhhcc
Q 021135 269 SIIVFGALYTRSFFKK 284 (317)
Q Consensus 269 ~~lv~~Gi~~~~~~k~ 284 (317)
..+++.|+++-...|+
T Consensus 280 ~~~ii~GV~lL~~~~~ 295 (300)
T PF05653_consen 280 FLIIIIGVFLLSSSKD 295 (300)
T ss_pred HHHHHHhhheeeccCc
Confidence 6667788877654443
No 43
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.64 E-value=1.1e-06 Score=80.06 Aligned_cols=133 Identities=9% Similarity=-0.007 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchHHHHHHHHHHHHHHH
Q 021135 142 VSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVATT 221 (317)
Q Consensus 142 ~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~il~l~~~~~~ 221 (317)
+.+.+++++++|...+..||..++ .++ ..++.+...++...|........ . +......+.|..++.-++....
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~--~~~--~~~~~~~~~~~~l~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~ 75 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK--EPD--FLWWALLAHSVLLTPYGLWYLAQ-V--GWSRLPATFWLLLAISAVANMV 75 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc--hhH--HHHHHHHHHHHHHHHHHHHhccc-C--CCCCcchhhHHHHHHHHHHHHH
Confidence 356678889999999888765543 222 23555556666666654332100 0 0101112233333333445667
Q ss_pred HHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhh
Q 021135 222 SQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSF 281 (317)
Q Consensus 222 g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~ 281 (317)
.+.++++++++.++...+++..+.|+++.++++++++|+++..+|+|+.+++.|+.+...
T Consensus 76 ~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 76 YFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 778899999999999999999999999999999999999999999999999999876553
No 44
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.59 E-value=5.7e-07 Score=70.90 Aligned_cols=74 Identities=16% Similarity=0.202 Sum_probs=65.4
Q ss_pred CchhHHHHHHHH-HHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhh
Q 021135 47 APVYKYCLVSMS-NILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFI 120 (317)
Q Consensus 47 ~~~~~~~~~s~~-~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~ 120 (317)
..+...+..++. ...+..+.+.++++++.+...++..+.|+++++++++++|||++++++++++++++|++++.
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 51 RQWLWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hhhhhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 344556666665 57778999999999999999999999999999999999999999999999999999998864
No 45
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.54 E-value=4e-06 Score=67.42 Aligned_cols=120 Identities=8% Similarity=0.074 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchHHHHHHHHHHH-HH
Q 021135 141 GVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLST-VA 219 (317)
Q Consensus 141 G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~il~l~~-~~ 219 (317)
|+++++.+.++.+...+..|+=.++.+..+ .... . ...... ..+|.. .+++++ +.
T Consensus 3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~--~~~~----~----~~~~~~-----------~~~p~~---~i~lgl~~~ 58 (129)
T PRK02971 3 GYLWGLASVLLASVAQLSLKWGMSRLPLLS--HAWD----F----IAALLA-----------FGLALR---AVLLGLAGY 58 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCcc--chhH----H----HHHHHH-----------HhccHH---HHHHHHHHH
Confidence 788888898888887777765544433211 0000 0 000000 011211 233343 45
Q ss_pred HHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHH--HhcCCCchhhhhhhhHhHhHHHhhhhhcc
Q 021135 220 TTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCV--WFRHPLSWEQCIGSIIVFGALYTRSFFKK 284 (317)
Q Consensus 220 ~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l--~f~e~~t~~~~~G~~lv~~Gi~~~~~~k~ 284 (317)
.++.++|.+++++.+...+..+..+.++...+.++. +|||++|+.+++|+++|++|+++....++
T Consensus 59 ~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 59 ALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 677889999999999999999999998888888885 89999999999999999999998765444
No 46
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.44 E-value=9.6e-06 Score=63.65 Aligned_cols=103 Identities=16% Similarity=0.221 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHhCchhHHhHhhhcchHHHHHHHHHHHHHH-HHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHh
Q 021135 179 LCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVAT-TSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWF 257 (317)
Q Consensus 179 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~il~l~~~~~-~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f 257 (317)
.++.++..+.....++..+..+....++ +...+..+.... .++.++++++++.++ .++++..+.|+++.+++.++|
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~ 82 (113)
T PF13536_consen 6 LFSVLFLLIILLIRGRLRDLFRALRRKP--WLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFF 82 (113)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444555433333332333 223333355444 677788899999995 888999999999999999999
Q ss_pred cCCCchhhhhhhhHhHhHHHhhhhhcc
Q 021135 258 RHPLSWEQCIGSIIVFGALYTRSFFKK 284 (317)
Q Consensus 258 ~e~~t~~~~~G~~lv~~Gi~~~~~~k~ 284 (317)
+|+++..+++|..++++|+.+..+.+-
T Consensus 83 ~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 83 KERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 999999999999999999988776654
No 47
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.41 E-value=1.2e-05 Score=75.83 Aligned_cols=139 Identities=14% Similarity=0.114 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchHHHHHHHHHHHHHH
Q 021135 141 GVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVAT 220 (317)
Q Consensus 141 G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~il~l~~~~~ 220 (317)
-++.++.-.++++...++.+... +.+.++....++-..++.++.++........ . .....++..|..+..+++++.
T Consensus 14 ~~~~~~~~q~~~~~~~~~~k~a~-~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~-~--~~~~~~~~~~~~l~l~g~~g~ 89 (358)
T PLN00411 14 FLTAMLATETSVVGISTLFKVAT-SKGLNIYPFLGYSYLLASLLLLPSLFFTNRS-R--SLPPLSVSILSKIGLLGFLGS 89 (358)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HCCCCccHHHHHHHHHHHHHHHHHHHHHHHh-c--ccCcchHHHHHHHHHHHHHHH
Confidence 34555556677777777777666 4578899999998889888877765432110 0 000012234445555555554
Q ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHH------hcCCCchhhhhhhhHhHhHHHhhhhhc
Q 021135 221 TSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVW------FRHPLSWEQCIGSIIVFGALYTRSFFK 283 (317)
Q Consensus 221 ~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~------f~e~~t~~~~~G~~lv~~Gi~~~~~~k 283 (317)
+.+.+++.++++.+|..++++.++.|+++.++++++ ++|+++..+++|+++-++|+.+....+
T Consensus 90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~ 158 (358)
T PLN00411 90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYH 158 (358)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHcc
Confidence 445578889999999999999999999999999999 699999999999999999987765444
No 48
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.40 E-value=8.4e-06 Score=63.85 Aligned_cols=63 Identities=10% Similarity=-0.024 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhh
Q 021135 58 SNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFI 120 (317)
Q Consensus 58 ~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~ 120 (317)
.+..+..+...+++.+|.+.+-.+.+..++.+++++++++|||++++|++++.++++|++++.
T Consensus 46 ~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 46 CLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 455667899999999999988777779999999999999999999999999999999998874
No 49
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.21 E-value=3.8e-05 Score=68.82 Aligned_cols=112 Identities=11% Similarity=0.064 Sum_probs=83.1
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchHHHHHHHHHHH-HHHHHHHHHHHHHHhhCh
Q 021135 157 TFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLST-VATTSQFFISYTIRTFGA 235 (317)
Q Consensus 157 v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~il~l~~-~~~~g~~~~~~~l~~~~a 235 (317)
+..|...++ ..++++..++....+.++..+..... .....+...+..+. +..+.+.+++.++++.++
T Consensus 6 ~~~k~~~~~-~~~~~~~~~~r~~~~~l~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~ 73 (260)
T TIGR00950 6 VVIGQYLEG-QVPLYFAVFRRLIFALLLLLPLLRRR-----------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV 73 (260)
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHhc-----------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 334433332 46788888888888877766543321 11123333344444 345666788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhh
Q 021135 236 LTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRS 280 (317)
Q Consensus 236 ~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~ 280 (317)
..++++..+.|+++.+++.++++|++++.+++|+++.+.|+.+..
T Consensus 74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~ 118 (260)
T TIGR00950 74 GEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLL 118 (260)
T ss_pred hhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhc
Confidence 999999999999999999999999999999999999999987754
No 50
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.16 E-value=7.6e-05 Score=68.87 Aligned_cols=127 Identities=11% Similarity=0.023 Sum_probs=95.5
Q ss_pred hhHHHHHHHHccCCCC--HHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021135 154 FTSTFQDKLFKGYDME--IHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVATTSQFFISYTIR 231 (317)
Q Consensus 154 ~~~v~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~il~l~~~~~~g~~~~~~~l~ 231 (317)
.+.+.||++.++...+ +.-+.+.+....++...+.....+.. . .....+......+++..++..+-+.+++
T Consensus 14 ~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~al~ 86 (303)
T PF08449_consen 14 SYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFP-----K--SRKIPLKKYAILSFLFFLASVLSNAALK 86 (303)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc-----C--CCcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899998765544 66777777777777666654433300 0 0111233334446677778788889999
Q ss_pred hhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhccccC
Q 021135 232 TFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKVSE 287 (317)
Q Consensus 232 ~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k~~~~ 287 (317)
+.+-.+..+.-..+++.+.++++++++++.+..++++.+++.+|+......+.+++
T Consensus 87 ~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~ 142 (303)
T PF08449_consen 87 YISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSS 142 (303)
T ss_pred hCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccc
Confidence 99999999999999999999999999999999999999999999998887765444
No 51
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.14 E-value=8.2e-05 Score=68.47 Aligned_cols=124 Identities=10% Similarity=0.074 Sum_probs=88.5
Q ss_pred HHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 021135 150 GFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVATTSQFFISYT 229 (317)
Q Consensus 150 ~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~il~l~~~~~~g~~~~~~~ 229 (317)
++....++++|...++. ..|..+.+....++.+...+.. ..+.. + ......+.|..++..+++..+.+.+.+.+
T Consensus 12 ~~~~~~~~~NK~~l~~~-~~P~~~~~~~~~~~~~~~~~~~-~~~~~-~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 85 (302)
T TIGR00817 12 FLNVYFNIYNKKLLNVF-PYPYFKTLISLAVGSLYCLLSW-SSGLP-K---RLKISSALLKLLLPVAIVHTIGHVTSNVS 85 (302)
T ss_pred HHHHHHHHHHHHHHhhC-ChhHHHHHHHHHHHHHHHHHHH-HhCCC-C---CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456777777643 4566766666666655443331 11110 0 01112345666666677767777788899
Q ss_pred HHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhh
Q 021135 230 IRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTR 279 (317)
Q Consensus 230 l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~ 279 (317)
+++.++...+++..+.|+++.++++++++|+++..+++|.++.++|+.+.
T Consensus 86 l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 86 LSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999998754
No 52
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.12 E-value=0.00017 Score=66.21 Aligned_cols=126 Identities=15% Similarity=0.105 Sum_probs=92.0
Q ss_pred HHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchHHHHHHHHHHHHH-HHHH
Q 021135 145 MVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVA-TTSQ 223 (317)
Q Consensus 145 ~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~il~l~~~~-~~g~ 223 (317)
.+.-.+.|+...+..|.... +.+|.+..++-..++.++.++.....+.- . ...+.|......+... ...+
T Consensus 13 ~~~~~~iWg~~~~~~K~~~~--~~~p~~~~~~R~~~a~l~ll~~~~~~~~~-----~--~~~~~~~~~~~~g~~~~~~~~ 83 (292)
T PRK11272 13 LFALYIIWGSTYLVIRIGVE--SWPPLMMAGVRFLIAGILLLAFLLLRGHP-----L--PTLRQWLNAALIGLLLLAVGN 83 (292)
T ss_pred HHHHHHHHhhHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHHhCCC-----C--CcHHHHHHHHHHHHHHHHHHH
Confidence 34456678877777765444 57899999999998888877765443321 0 1123344444444433 3455
Q ss_pred HHHHHHH-HhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhh
Q 021135 224 FFISYTI-RTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRS 280 (317)
Q Consensus 224 ~~~~~~l-~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~ 280 (317)
.+++.+. ++.++..++++..+.|+++.+++.+ ++|+++..+++|..+.++|+.+..
T Consensus 84 ~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~ 140 (292)
T PRK11272 84 GMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLN 140 (292)
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHh
Confidence 6777777 9999999999999999999999985 799999999999999999987654
No 53
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.12 E-value=1.6e-05 Score=62.68 Aligned_cols=73 Identities=12% Similarity=0.106 Sum_probs=62.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhh
Q 021135 48 PVYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFI 120 (317)
Q Consensus 48 ~~~~~~~~s~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~ 120 (317)
.|....+.|+....+..++|.|++.-++|-..=+..+.|+++.+++++++|||++..+|++++++++|++++.
T Consensus 66 ~~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 66 SWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred eehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 3444455556666778899999999888877778889999999999999999999999999999999998764
No 54
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.10 E-value=0.00017 Score=64.76 Aligned_cols=140 Identities=13% Similarity=0.120 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchHHHHHHHHHHHHH
Q 021135 140 WGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVA 219 (317)
Q Consensus 140 ~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~il~l~~~~ 219 (317)
-|+++.+.|-+.+++...+.+-+ + +.++.|+..+--.++.++.+......++..+..+ ...+|..+.....-+ .-
T Consensus 7 ~Gil~~l~Ay~lwG~lp~y~kll-~--~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~-~~~~p~~~~~~~l~a-~l 81 (293)
T COG2962 7 KGILLALLAYLLWGLLPLYFKLL-E--PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQ-LLKQPKTLLMLALTA-LL 81 (293)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH-c--cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHhCcHHHHHHHHHH-HH
Confidence 49999999999999988777543 3 3577899889999999888877666655444333 335665554332211 11
Q ss_pred HHHHH-HHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhcc
Q 021135 220 TTSQF-FISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKK 284 (317)
Q Consensus 220 ~~g~~-~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k~ 284 (317)
...|. .+.++..+-....+|.=-.+.|.+.++++.++++|+++..||+..++..+|+....+...
T Consensus 82 i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g 147 (293)
T COG2962 82 IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG 147 (293)
T ss_pred HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC
Confidence 23443 344678888899999999999999999999999999999999999999999987766544
No 55
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.09 E-value=0.00014 Score=68.47 Aligned_cols=136 Identities=7% Similarity=-0.025 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchHHHHHHHHHHHHHH
Q 021135 141 GVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVAT 220 (317)
Q Consensus 141 G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~il~l~~~~~ 220 (317)
-..+++..-.+.......+|.+.+..+ .|+.+..+...++.++..+... .+ ..+..+. ......|..++.++++..
T Consensus 50 ~~~~~~~wy~~s~~~~~~nK~vl~~~~-~P~~l~~~~~~~~~l~~~~~~~-~~-~~~~~~~-~~~~~~~~~llp~gl~~~ 125 (350)
T PTZ00343 50 LALLFLTWYALNVLYVVDNKLALNMLP-LPWTISSLQLFVGWLFALLYWA-TG-FRKIPRI-KSLKLFLKNFLPQGLCHL 125 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC-hhHHHHHHHHHHHHHHHHHHHH-hC-CCCCCCC-CCHHHHHHHHHHHHHHHH
Confidence 334444455556666777887777542 2888888888887765444322 11 1000001 001124556666677777
Q ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhh
Q 021135 221 TSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRS 280 (317)
Q Consensus 221 ~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~ 280 (317)
.++...+.++++.+++.++++..+.|++++++++++++|++++.++.|.+++++|+.+..
T Consensus 126 ~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 126 FVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 777666788999999999999999999999999999999999999999999999988654
No 56
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.06 E-value=4.6e-05 Score=59.68 Aligned_cols=60 Identities=7% Similarity=0.094 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhh
Q 021135 220 TTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTR 279 (317)
Q Consensus 220 ~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~ 279 (317)
.++.+++.+++++.+...+-.+..+.++.+.++|+++|||++|+.+++|++++++|+..-
T Consensus 48 ~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i 107 (111)
T PRK15051 48 GLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVIL 107 (111)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 456678888999999999999999999999999999999999999999999999998654
No 57
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.02 E-value=0.00022 Score=65.63 Aligned_cols=123 Identities=11% Similarity=-0.015 Sum_probs=87.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchHHHHHHHHHHHHHHHH
Q 021135 143 SLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVATTS 222 (317)
Q Consensus 143 ~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~il~l~~~~~~g 222 (317)
++.+++.++|+...+..|...+ +.+|....++-..++.+..++..... ..+ +..++..++....+
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~~~l~~~~~~~-----------~~~--~~~~~~~g~~~~~~ 71 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLH--NMPPLMLAGLRFMLVAFPAIFFVARP-----------KVP--LNLLLGYGLTISFG 71 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHhcCC-----------CCc--hHHHHHHHHHHHHH
Confidence 4566778899998888876554 47888888888777665444332111 001 11222223333333
Q ss_pred H-HHHHHHHHh-hChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhh
Q 021135 223 Q-FFISYTIRT-FGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRS 280 (317)
Q Consensus 223 ~-~~~~~~l~~-~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~ 280 (317)
+ .+++.++++ .++..++++..+.|+++.++++++++|+++..+++|.++.++|+.+-.
T Consensus 72 ~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~ 131 (299)
T PRK11453 72 QFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLI 131 (299)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhc
Confidence 3 355667776 578899999999999999999999999999999999999999977654
No 58
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.88 E-value=0.00046 Score=63.39 Aligned_cols=129 Identities=5% Similarity=-0.051 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchHHHHHHHHHHHHHH
Q 021135 141 GVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVAT 220 (317)
Q Consensus 141 G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~il~l~~~~~ 220 (317)
++++++.+.++|+...+..|...+ ..+|....++-...+.++..+.. .... .... .+..++.-++...
T Consensus 5 ~~l~~l~a~~~Wg~~~~~~k~~~~--~~~P~~~~~~R~~~a~l~l~~~~----~~~~----~~~~--~~~~~~~~~l~~~ 72 (295)
T PRK11689 5 ATLIGLIAILLWSTMVGLIRGVSE--SLGPVGGAAMIYSVSGLLLLLTV----GFPR----LRQF--PKRYLLAGGLLFV 72 (295)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc--cCChHHHHHHHHHHHHHHHHHHc----cccc----cccc--cHHHHHHHhHHHH
Confidence 566778888899988777776555 36788887777777766655432 1100 0111 1112211122222
Q ss_pred HHHHHHHHHH----HhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhh
Q 021135 221 TSQFFISYTI----RTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSF 281 (317)
Q Consensus 221 ~g~~~~~~~l----~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~ 281 (317)
..+.+.+.++ ++.++..++++..+.|+++.++++++++|++++.+++|+++.+.|+.+-..
T Consensus 73 ~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~ 137 (295)
T PRK11689 73 SYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLG 137 (295)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheec
Confidence 2333444444 456888899999999999999999999999999999999999999876553
No 59
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.84 E-value=0.00035 Score=64.11 Aligned_cols=131 Identities=13% Similarity=0.017 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchHHHHHHHHHHHHHH
Q 021135 141 GVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVAT 220 (317)
Q Consensus 141 G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~il~l~~~~~ 220 (317)
|++++++++++++...+..|++. +.++.+.+ -..++.++........... . ...+..+..-+.-+..=.
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~---g~~~~~~~--~~~~g~l~~~~~~~~~~~~-----~-~~~~~~~~~g~l~G~~w~ 70 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG---GGPYSQTL--GTTFGALILSIAIAIFVLP-----E-FWALSIFLVGLLSGAFWA 70 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC---CCHHHHHH--HHHHHHHHHHHHHHHHhCC-----c-ccccHHHHHHHHHHHHHH
Confidence 57888999999999988886653 44444443 1233333333222221110 0 011333332222233446
Q ss_pred HHHHHHHHHHHhhChHHHHHHHH-HHHHHHHHHHHHHhcCCCchhh----hhhhhHhHhHHHhhhhh
Q 021135 221 TSQFFISYTIRTFGALTFATIMT-TRQLVSIVLSCVWFRHPLSWEQ----CIGSIIVFGALYTRSFF 282 (317)
Q Consensus 221 ~g~~~~~~~l~~~~a~~~si~~~-~~~v~aiils~l~f~e~~t~~~----~~G~~lv~~Gi~~~~~~ 282 (317)
.+|++++.++++.+...+-.+.+ +.++++.+++.++|+|+.+..+ ++|.++++.|+++....
T Consensus 71 ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~ 137 (290)
T TIGR00776 71 LGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS 137 (290)
T ss_pred hhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence 78899999999999999988888 8888999999999999999999 99999999998876444
No 60
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.82 E-value=0.00054 Score=54.22 Aligned_cols=65 Identities=15% Similarity=0.138 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhhChHHH-HHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhc
Q 021135 219 ATTSQFFISYTIRTFGALTF-ATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFK 283 (317)
Q Consensus 219 ~~~g~~~~~~~l~~~~a~~~-si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k 283 (317)
-.++.+++..++++.+-..+ ++..-+.-+.+.++++++|||++|+.+++|++++++|+..-....
T Consensus 40 ~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 40 ISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 34556677778888887654 444668889999999999999999999999999999997765544
No 61
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.75 E-value=0.002 Score=58.00 Aligned_cols=142 Identities=12% Similarity=0.023 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchHHHHHHHHHHH
Q 021135 138 TVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLST 217 (317)
Q Consensus 138 ~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~il~l~~ 217 (317)
...+..+.+.+.+.++......+...+. ..+.....++....+.+...+....... . ........+...+.-.+
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~ 78 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVES-LDPFLFAAALRFLIAALLLLPLLLLEPR--G---LRPALRPWLLLLLLALL 78 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHHHHHHhhcc--c---ccccccchHHHHHHHHH
Confidence 4456666666767777777666555443 2344444444444444442222111110 0 00011111222222234
Q ss_pred HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHH-HHhcCCCchhhhhhhhHhHhHHHhhhhhccc
Q 021135 218 VATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSC-VWFRHPLSWEQCIGSIIVFGALYTRSFFKKV 285 (317)
Q Consensus 218 ~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~-l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k~~ 285 (317)
.....+.+++.++++.++..++++..+.|+++.+++. ++++|++++.++.|..+.+.|+.+...+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 79 GLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence 5566777888999999999999999999999999997 6679999999999999999999887765543
No 62
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.00015 Score=65.92 Aligned_cols=216 Identities=13% Similarity=0.212 Sum_probs=124.6
Q ss_pred HHHHH-HHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhcc-CCCCCCCC
Q 021135 53 CLVSM-SNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILF-PSGADLSP 130 (317)
Q Consensus 53 ~~~s~-~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~-~~~~~~~~ 130 (317)
.+.|+ +...+-..++.|..|.|.+..+=+.+...+..++++..++|||.+..-.++++++++|-.++... |...+..
T Consensus 67 Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~- 145 (335)
T KOG2922|consen 67 WWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIE- 145 (335)
T ss_pred HHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccc-
Confidence 34454 44556788899999999998888999999999999999999999999999999999999877543 2111111
Q ss_pred CCCCCCchH------HHHH---HHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHH--hCc-hhHH
Q 021135 131 YSKGRENTV------WGVS---LMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLIL--EGH-LFLA 198 (317)
Q Consensus 131 ~~~~~~~~~------~G~~---~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~-~~~~ 198 (317)
..... ++++ ....-.++ +..-....+++. ..++.|....+.+-++-.+.. -|. +...
T Consensus 146 ----t~~el~~~~~~~~Fliy~~~iil~~~-----il~~~~~p~~g~--tnilvyi~i~s~iGS~tV~svKalg~aiklt 214 (335)
T KOG2922|consen 146 ----SVEEVWELATEPGFLVYVIIIILIVL-----ILIFFYAPRYGQ--TNILVYIGICSLIGSLTVMSVKALGIAIKLT 214 (335)
T ss_pred ----cHHHHHHHhcCccHHHHHHHHHHHHH-----HHheeecccccc--cceeehhhHhhhhcceeeeeHHHHHHHHHHH
Confidence 00111 1211 11111110 000001112221 133445444443322211100 000 0000
Q ss_pred hH--hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH-HHHHHHHHHHHHhcC--CCchhhh----hhh
Q 021135 199 ID--FVYHHLDCFFDVALLSTVATTSQFFISYTIRTFGALTFATIMTT-RQLVSIVLSCVWFRH--PLSWEQC----IGS 269 (317)
Q Consensus 199 ~~--~~~~~~~~~~~il~l~~~~~~g~~~~~~~l~~~~a~~~si~~~~-~~v~aiils~l~f~e--~~t~~~~----~G~ 269 (317)
++ .-..+|..|..++.+..|..+-....+.+++.+++...+.+.+. -..++++.|.++|.| ..+..++ .|.
T Consensus 215 ~~g~~ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf 294 (335)
T KOG2922|consen 215 FSGNNQLFYPLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGF 294 (335)
T ss_pred hcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhH
Confidence 00 00134545544444344444444578889999999888877765 677888999999987 4565554 566
Q ss_pred hHhHhHHHhhh
Q 021135 270 IIVFGALYTRS 280 (317)
Q Consensus 270 ~lv~~Gi~~~~ 280 (317)
..++.|+++-.
T Consensus 295 ~ti~~G~flL~ 305 (335)
T KOG2922|consen 295 VTIFLGIFLLH 305 (335)
T ss_pred HHhhheeeEee
Confidence 66777876653
No 63
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.62 E-value=0.00063 Score=55.80 Aligned_cols=71 Identities=13% Similarity=0.195 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHh
Q 021135 49 VYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIF 119 (317)
Q Consensus 49 ~~~~~~~s~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~ 119 (317)
+...+..++..+..+...+..++++++-++.++...|.+.+.++++++++++++.+++.|++++++|+.+.
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY 151 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence 33445556677777899999999999999999999999999999999999999999999999999998865
No 64
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.62 E-value=0.0017 Score=50.61 Aligned_cols=64 Identities=14% Similarity=0.186 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhhChHHH-HHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhc
Q 021135 220 TTSQFFISYTIRTFGALTF-ATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFK 283 (317)
Q Consensus 220 ~~g~~~~~~~l~~~~a~~~-si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k 283 (317)
.++.+++..++++.+-..+ ++..-+.-+.+.++++++|+|++++.+++|++++++|+..-....
T Consensus 41 ~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 41 CASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3444566678888876654 555668888999999999999999999999999999998765443
No 65
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.61 E-value=0.0022 Score=59.75 Aligned_cols=77 Identities=12% Similarity=0.257 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhcc
Q 021135 208 CFFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKK 284 (317)
Q Consensus 208 ~~~~il~l~~~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k~ 284 (317)
.|+..+.++++-.-+++++..+.++.+.+.++++.....+++.++|++++++++++.|++|+.+.++|+.+......
T Consensus 78 ~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~ 154 (334)
T PF06027_consen 78 PWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV 154 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence 45555556888889999999999999999999999999999999999999999999999999999999887766654
No 66
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.60 E-value=0.00057 Score=61.09 Aligned_cols=71 Identities=11% Similarity=0.174 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhcccc
Q 021135 216 STVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKVS 286 (317)
Q Consensus 216 ~~~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k~~~ 286 (317)
+++-++.+.+.+.++++.+|.+..+...++.+++.++++++++++++..||+++.+.+.|+..........
T Consensus 24 A~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 24 ALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 33445666788889999999999999999999999999999999999999999999999998877766544
No 67
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.54 E-value=0.00058 Score=54.88 Aligned_cols=71 Identities=15% Similarity=0.176 Sum_probs=58.8
Q ss_pred HHHHHH-HHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHH--HhccccchhHHHHHHHHHHhHHHhhcc
Q 021135 52 YCLVSM-SNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTL--IMQKRYKGYDYFLALLVTLGCSIFILF 122 (317)
Q Consensus 52 ~~~~s~-~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l--~~k~~~~~~~~~~~~l~~~Gv~l~~~~ 122 (317)
++..++ ++.++..+++.+++..+.+.+--+.+..+..+++.++. ++||+++++|+++++++++|+.++...
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 455565 56777899999999999998766667777777777774 899999999999999999999998643
No 68
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.52 E-value=0.00061 Score=53.91 Aligned_cols=73 Identities=11% Similarity=0.039 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCChhH-HHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhcc
Q 021135 50 YKYCLVSMSNILTTTCQYEALKYVSFPV-QTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILF 122 (317)
Q Consensus 50 ~~~~~~s~~~~~~~~~~~~aL~~~s~~~-~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~ 122 (317)
......-+++..+.++...+++++|.+. +.+....-.+.+.+.+++++||++++.+++++.++++|++++-..
T Consensus 31 ~~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 31 GGFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 3345555677778899999999999986 466667788899999999999999999999999999999887543
No 69
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.48 E-value=0.037 Score=51.79 Aligned_cols=227 Identities=11% Similarity=0.011 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCChhHH-HHHhhcchHHHHHHHHHHhcccc---c----hhHHHHHHHHHHhHHHhhccCC
Q 021135 53 CLVSMSNILTTTCQYEALKYVSFPVQ-TLAKCAKMIPVMIWGTLIMQKRY---K----GYDYFLALLVTLGCSIFILFPS 124 (317)
Q Consensus 53 ~~~s~~~~~~~~~~~~aL~~~s~~~~-~ll~s~~pi~v~i~~~l~~k~~~---~----~~~~~~~~l~~~Gv~l~~~~~~ 124 (317)
++.|++...++..+..+.+|+..+.. -+......+...++..++++|-. + ..-.++++++++|+++......
T Consensus 77 ~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~ 156 (345)
T PRK13499 77 FLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ 156 (345)
T ss_pred HHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55566777788999999999887754 35555667777888888887543 2 2357889999999999877311
Q ss_pred CCCCCCCC--CCCCchHHHHHHHHHHHHHhhhhH-------HHHHHHHccCCCCHHHHHHHHHH---HHHHHHHH-HHHH
Q 021135 125 GADLSPYS--KGRENTVWGVSLMVGYLGFDGFTS-------TFQDKLFKGYDMEIHNQIFYTTL---CSCVLSLS-GLIL 191 (317)
Q Consensus 125 ~~~~~~~~--~~~~~~~~G~~~~l~a~~~~a~~~-------v~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~ 191 (317)
..|.+... .++.+..-|++.++++-+.++.++ ...+... +.+.++.....-+.. ++..+.-. ....
T Consensus 157 ~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~-~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~ 235 (345)
T PRK13499 157 LKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAA-ALGVDPLYAALPSYVVIMGGGAITNLGFCFI 235 (345)
T ss_pred hcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhh-hcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111100 112344579999999999999888 3332211 123343322221111 22111111 1111
Q ss_pred ---hCchhH-HhHhhhcchHHHHHHHH--H-HHHHHHHHHHHHHHHHhhChHHHHH---HH-HHHHHHHHHHHHHHhcCC
Q 021135 192 ---EGHLFL-AIDFVYHHLDCFFDVAL--L-STVATTSQFFISYTIRTFGALTFAT---IM-TTRQLVSIVLSCVWFRHP 260 (317)
Q Consensus 192 ---~g~~~~-~~~~~~~~~~~~~~il~--l-~~~~~~g~~~~~~~l~~~~a~~~si---~~-~~~~v~aiils~l~f~e~ 260 (317)
.++-.+ ..++....+..+...+. + ++.=.++..++..+-++.+.....+ +. .+.-+++.+.++ +++|.
T Consensus 236 ~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~ 314 (345)
T PRK13499 236 RLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEW 314 (345)
T ss_pred HHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhc
Confidence 111000 00110000111222111 1 2222345555555556664443333 33 566688899998 49997
Q ss_pred Cc------hhhhhhhhHhHhHHHhhhh
Q 021135 261 LS------WEQCIGSIIVFGALYTRSF 281 (317)
Q Consensus 261 ~t------~~~~~G~~lv~~Gi~~~~~ 281 (317)
=+ ..-++|+++++.|..+..+
T Consensus 315 K~a~~k~~~~l~~G~vliI~g~~lig~ 341 (345)
T PRK13499 315 KGASRRPVRVLSLGCVVIILAANIVGL 341 (345)
T ss_pred cCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 66 6668999999988766544
No 70
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.45 E-value=0.0057 Score=57.16 Aligned_cols=142 Identities=10% Similarity=0.021 Sum_probs=90.9
Q ss_pred chHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHH--HHHH---HHHHhCchhHHhHhhhcchHHHHH
Q 021135 137 NTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCV--LSLS---GLILEGHLFLAIDFVYHHLDCFFD 211 (317)
Q Consensus 137 ~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~g~~~~~~~~~~~~~~~~~~ 211 (317)
+...|+++++++.+|++...+-+|| ++.-+||.. |. ..+.. +..| ..+..+++.+..+ +.++..+..
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~----~k~w~wE~~-W~-v~gi~~wl~~~~~~g~~~~~~f~~~~~--~~~~~~~~~ 75 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK----VKKWSWETM-WS-VGGIFSWLILPWLIAALLLPDFWAYYS--SFSGSTLLP 75 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc----cCCCchhHH-HH-HHHHHHHHHHHHHHHHHHhhhHHHHHH--hcCHHHHHH
Confidence 4567999999999999988887755 333456654 43 22221 1122 1222333322211 134445544
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH-HHHHHHHHHHHHHhcCCC---c----hhhhhhhhHhHhHHHhhhhhc
Q 021135 212 VALLSTVATTSQFFISYTIRTFGALTFATIMT-TRQLVSIVLSCVWFRHPL---S----WEQCIGSIIVFGALYTRSFFK 283 (317)
Q Consensus 212 il~l~~~~~~g~~~~~~~l~~~~a~~~si~~~-~~~v~aiils~l~f~e~~---t----~~~~~G~~lv~~Gi~~~~~~k 283 (317)
-+.-++.=.+||+..+.++++.+-+..-.+.+ +.-+...++..+++||-- + ..-.+|.+++++|+.+..+.-
T Consensus 76 ~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag 155 (345)
T PRK13499 76 VFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAG 155 (345)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 43445566789999999999999777666555 577788888999998632 2 345788899999999988854
Q ss_pred ccc
Q 021135 284 KVS 286 (317)
Q Consensus 284 ~~~ 286 (317)
.++
T Consensus 156 ~~k 158 (345)
T PRK13499 156 QLK 158 (345)
T ss_pred hhc
Confidence 443
No 71
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.45 E-value=0.00094 Score=51.29 Aligned_cols=72 Identities=14% Similarity=0.083 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcCChhH-HHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhh
Q 021135 49 VYKYCLVSMSNILTTTCQYEALKYVSFPV-QTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFI 120 (317)
Q Consensus 49 ~~~~~~~s~~~~~~~~~~~~aL~~~s~~~-~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~ 120 (317)
++.....-+.+..+..+.-.|++++|.++ +.+-...-.+.+.+.+++++||+.+..+++++.++++|++..-
T Consensus 30 ~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 30 LWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLK 102 (106)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhh
Confidence 44455556677777888889999999986 5777777888899999999999999999999999999998874
No 72
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.40 E-value=0.0096 Score=48.41 Aligned_cols=129 Identities=14% Similarity=0.188 Sum_probs=86.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchHHHHHHHHH-HHHHHH
Q 021135 143 SLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALL-STVATT 221 (317)
Q Consensus 143 ~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~il~l-~~~~~~ 221 (317)
++.+.+-.+-++....+.++.++.+ +++...+.....+.+......+..++. ..+..... .|+. ++ ++++.+
T Consensus 4 lla~~aG~~i~~q~~~N~~L~~~~g-s~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~--p~w~--~lGG~lG~~ 76 (138)
T PF04657_consen 4 LLALLAGALIALQAAFNGQLGKALG-SPLVASFISFGVGFILLLIILLITGRP--SLASLSSV--PWWA--YLGGLLGVF 76 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccC--ChHH--hccHHHHHH
Confidence 4455566666777777777776554 577777777788887777665554442 11111111 2222 22 556666
Q ss_pred HHHHHHHHHHhhChHHHHHHHHHHH-HHHHHHHHH-Hh---cCCCchhhhhhhhHhHhHHHh
Q 021135 222 SQFFISYTIRTFGALTFATIMTTRQ-LVSIVLSCV-WF---RHPLSWEQCIGSIIVFGALYT 278 (317)
Q Consensus 222 g~~~~~~~l~~~~a~~~si~~~~~~-v~aiils~l-~f---~e~~t~~~~~G~~lv~~Gi~~ 278 (317)
...+...++++.++..+......-+ +.+.+++.+ +| .+++++.+++|..++++|+++
T Consensus 77 ~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 77 FVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 6677888899999999888877754 456666765 33 368999999999999999863
No 73
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.37 E-value=0.0013 Score=51.14 Aligned_cols=71 Identities=13% Similarity=0.104 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcCChhH-HHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHh
Q 021135 49 VYKYCLVSMSNILTTTCQYEALKYVSFPV-QTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIF 119 (317)
Q Consensus 49 ~~~~~~~s~~~~~~~~~~~~aL~~~s~~~-~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~ 119 (317)
+......-+.+..+.++...+++++|.++ +.+-...-.+.+.+.+++++||++++.|++++.++++|++..
T Consensus 35 ~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 35 KIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 33344555667777888889999999986 577777778889999999999999999999999999999875
No 74
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.36 E-value=0.0014 Score=50.63 Aligned_cols=72 Identities=10% Similarity=0.026 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcCChhH-HHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhh
Q 021135 49 VYKYCLVSMSNILTTTCQYEALKYVSFPV-QTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFI 120 (317)
Q Consensus 49 ~~~~~~~s~~~~~~~~~~~~aL~~~s~~~-~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~ 120 (317)
+...+..-+.+..+.++...+++.+|.++ +.+-...-.+.+.+.+++++||+.++.|++++.++++|++..-
T Consensus 29 ~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 29 LTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 44445555667778888899999999986 5777777888899999999999999999999999999998873
No 75
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.33 E-value=0.007 Score=47.06 Aligned_cols=60 Identities=10% Similarity=0.138 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhhChHH-HHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhh
Q 021135 220 TTSQFFISYTIRTFGALT-FATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTR 279 (317)
Q Consensus 220 ~~g~~~~~~~l~~~~a~~-~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~ 279 (317)
.+..++...++|+.+-.+ .++.+-+.-+.+.+.++++|+|++++.+++|+++++.|+..-
T Consensus 46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 345556667788887654 577777888999999999999999999999999999998764
No 76
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.32 E-value=0.002 Score=50.27 Aligned_cols=69 Identities=9% Similarity=0.049 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcCChhHH-HHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhc
Q 021135 53 CLVSMSNILTTTCQYEALKYVSFPVQ-TLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFIL 121 (317)
Q Consensus 53 ~~~s~~~~~~~~~~~~aL~~~s~~~~-~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~ 121 (317)
...-+.+..+..+...+++.+|.+.+ .+-.....+.+.+.+++++||+.++.+++++.++++|++++-.
T Consensus 34 i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34445677778888899999999864 5656667788899999999999999999999999999999854
No 77
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.28 E-value=0.013 Score=53.78 Aligned_cols=126 Identities=7% Similarity=-0.039 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchHHHHHHHHHHH
Q 021135 138 TVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLST 217 (317)
Q Consensus 138 ~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~il~l~~ 217 (317)
...|..+++++.++++......|...++ .++.+..++-..+++++.++....... ...++.|...+..++
T Consensus 10 ~~~~~~~~~la~~~~~~~~~~~K~~~~~--~~~~~~~~~R~~~a~l~l~~~~~~~~~--------~~~~~~~~~~~~~g~ 79 (293)
T PRK10532 10 VWLPILLLLIAMASIQSGASLAKSLFPL--VGAPGVTALRLALGTLILIAIFKPWRL--------RFAKEQRLPLLFYGV 79 (293)
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHhHHhc--------cCCHHHHHHHHHHHH
Confidence 3678999999999999888888776653 678889999898888776654311100 012234444444555
Q ss_pred HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhh
Q 021135 218 VATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTR 279 (317)
Q Consensus 218 ~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~ 279 (317)
+....+.++++++++.++..++++..+.|+++.+++. |++.. +.++.+.+.|+.+.
T Consensus 80 ~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--~~~~~i~~~Gv~li 135 (293)
T PRK10532 80 SLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--FVWVVLAVLGLWFL 135 (293)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--HHHHHHHHHHHhee
Confidence 5556667888899999999999999999999988772 44443 34445556666543
No 78
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.15 E-value=0.011 Score=45.52 Aligned_cols=62 Identities=13% Similarity=0.224 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhhChH-HHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhh
Q 021135 220 TTSQFFISYTIRTFGAL-TFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSF 281 (317)
Q Consensus 220 ~~g~~~~~~~l~~~~a~-~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~ 281 (317)
.+...+...++|+.+-. ..++.+-.-.+.+.+.++++|+|++++.+++|+.++++|+..-..
T Consensus 41 ~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 41 GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 34445666788888754 468888889999999999999999999999999999999876544
No 79
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.13 E-value=0.014 Score=45.10 Aligned_cols=61 Identities=7% Similarity=0.117 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhhChH-HHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhh
Q 021135 220 TTSQFFISYTIRTFGAL-TFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRS 280 (317)
Q Consensus 220 ~~g~~~~~~~l~~~~a~-~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~ 280 (317)
.++.++...++|+.+-. ..++.+-+..+.+.+.++++|+|++++.+++|+.++++|+..-+
T Consensus 40 ~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 40 IVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 45556667788888755 45777888999999999999999999999999999999987653
No 80
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.08 E-value=0.0033 Score=57.92 Aligned_cols=122 Identities=13% Similarity=0.073 Sum_probs=84.7
Q ss_pred CchHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchHHHHHHHHH
Q 021135 136 ENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALL 215 (317)
Q Consensus 136 ~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~il~l 215 (317)
.+..+|+.+++.+.++.+...++|||-..+.+.+.... ++ ...++. .+| .|+.-+.
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~-------------------~~--~~~~~l-~~~-~W~~G~~- 58 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRA-------------------GS--GGRSYL-RRP-LWWIGLL- 58 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-------------------cc--hhhHHH-hhH-HHHHHHH-
Confidence 34678999999999999999999988654332211000 00 000110 112 3332221
Q ss_pred HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhc
Q 021135 216 STVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFK 283 (317)
Q Consensus 216 ~~~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k 283 (317)
...+|..+-+.++...+++..++++.+.-+++.+++..+++|+++...++|.++++.|........
T Consensus 59 --~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~ 124 (300)
T PF05653_consen 59 --LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA 124 (300)
T ss_pred --HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence 123555566668888899999999999999999999999999999999999999999976555433
No 81
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.91 E-value=0.011 Score=53.23 Aligned_cols=117 Identities=16% Similarity=0.139 Sum_probs=78.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Q 021135 165 GYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVATTSQFFISYTIRTFGALTFATIMTT 244 (317)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~il~l~~~~~~g~~~~~~~l~~~~a~~~si~~~~ 244 (317)
|.+-+|.+..+-+..-+.++.+...+....-. ..++..+..-+.-+++=.+||...+.+.++.+-+++-++++-
T Consensus 7 k~gG~~~~Q~lG~t~Gali~alv~~~~~~p~~------~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg 80 (269)
T PF06800_consen 7 KIGGKPANQILGTTIGALIFALVVFLFRQPAF------SMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTG 80 (269)
T ss_pred eeCCcHHHHHHHHHHHHHHHHHHHHHHhCCCc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchh
Confidence 34557777777666666666555444332110 011233333222255567899999999999999999888866
Q ss_pred -HHHHHHHHHHHHhcCCCchhhhh----hhhHhHhHHHhhhhhccccC
Q 021135 245 -RQLVSIVLSCVWFRHPLSWEQCI----GSIIVFGALYTRSFFKKVSE 287 (317)
Q Consensus 245 -~~v~aiils~l~f~e~~t~~~~~----G~~lv~~Gi~~~~~~k~~~~ 287 (317)
+-+.+.++++++|||.-+..+++ ++++++.|+++..+.+++++
T Consensus 81 ~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~ 128 (269)
T PF06800_consen 81 LQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSD 128 (269)
T ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccccccc
Confidence 44558889999999987766644 67778889999888776554
No 82
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.88 E-value=0.0086 Score=45.21 Aligned_cols=53 Identities=15% Similarity=0.232 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhhChHHH-HHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHh
Q 021135 220 TTSQFFISYTIRTFGALTF-ATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIV 272 (317)
Q Consensus 220 ~~g~~~~~~~l~~~~a~~~-si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv 272 (317)
.++.+++..++|+.+..++ .+..-+..+.+.+.|+++|||++|+.+++|+.+|
T Consensus 40 ~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 40 GLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3455677888999988777 5566789999999999999999999999999885
No 83
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.64 E-value=0.00021 Score=62.56 Aligned_cols=209 Identities=8% Similarity=0.088 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHhhhcCChhHHH-HHhhcchHHHHHHHHHHhccccchhHH----HHHHHHHHhHHHhhccCCCCCCC
Q 021135 55 VSMSNILTTTCQYEALKYVSFPVQT-LAKCAKMIPVMIWGTLIMQKRYKGYDY----FLALLVTLGCSIFILFPSGADLS 129 (317)
Q Consensus 55 ~s~~~~~~~~~~~~aL~~~s~~~~~-ll~s~~pi~v~i~~~l~~k~~~~~~~~----~~~~l~~~Gv~l~~~~~~~~~~~ 129 (317)
.|+....+...++.|.++..++.++ +-..+..+-+-+++++.++|..+..|. ++++++++|+.+-...+. +
T Consensus 65 sG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~----~ 140 (288)
T COG4975 65 SGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR----N 140 (288)
T ss_pred hhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc----c
Confidence 3345555677888999987766443 223344555668899999998888764 567778888877655421 1
Q ss_pred CCCCC-CCchHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchHH
Q 021135 130 PYSKG-RENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDC 208 (317)
Q Consensus 130 ~~~~~-~~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 208 (317)
++..+ .++.-.|+...+.+.+.|-.|.+..+ ..+.+.+...+-+..-..+..+.......+- ..+...
T Consensus 141 nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~----~f~v~g~saiLPqAiGMv~~ali~~~~~~~~-------~~~K~t 209 (288)
T COG4975 141 NKEEENPSNLKKGIVILLISTLGYVGYVVLFQ----LFDVDGLSAILPQAIGMVIGALILGFFKMEK-------RFNKYT 209 (288)
T ss_pred cccccChHhhhhheeeeeeeccceeeeEeeec----cccccchhhhhHHHHHHHHHHHHHhhccccc-------chHHHH
Confidence 11111 13334588887778887777766543 3344555544433332222222222211110 011234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhh----hhhhhHhHhHHHhh
Q 021135 209 FFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQ----CIGSIIVFGALYTR 279 (317)
Q Consensus 209 ~~~il~l~~~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~----~~G~~lv~~Gi~~~ 279 (317)
|..+ .-++.=.+|+++++.+-++.+-.+.=.++.+.-+++.+-++++++|+=|..+ ++|+++++.|..+.
T Consensus 210 ~~ni-i~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~l 283 (288)
T COG4975 210 WLNI-IPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILL 283 (288)
T ss_pred HHHH-hhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhh
Confidence 4333 2245556788888888877777776667777788999999999999988877 56777777665443
No 84
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.48 E-value=0.0049 Score=48.09 Aligned_cols=69 Identities=13% Similarity=0.164 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCChhHHH-HHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHh
Q 021135 51 KYCLVSMSNILTTTCQYEALKYVSFPVQT-LAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIF 119 (317)
Q Consensus 51 ~~~~~s~~~~~~~~~~~~aL~~~s~~~~~-ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~ 119 (317)
+|...=+.|..+....+..|...+.+.++ +.+++.-++|.+.++++.+|..+++.++|+++++.|+.++
T Consensus 43 ~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 43 KYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 45555567788888899999999988765 5579999999999999999999999999999999998764
No 85
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.41 E-value=0.011 Score=44.63 Aligned_cols=57 Identities=14% Similarity=0.083 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhhhcCChhH-HHHHhhcchHHHHHHHHHHhccccchhHHHHHHHH
Q 021135 56 SMSNILTTTCQYEALKYVSFPV-QTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLV 112 (317)
Q Consensus 56 s~~~~~~~~~~~~aL~~~s~~~-~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~ 112 (317)
-..+..+..+...+++++|.++ +.+......+.+.+.+.+++||+.+.+|++++.++
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3467777889999999999986 47777788899999999999999999999998764
No 86
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.34 E-value=0.0012 Score=58.59 Aligned_cols=67 Identities=12% Similarity=0.220 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhh
Q 021135 216 STVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFF 282 (317)
Q Consensus 216 ~~~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~ 282 (317)
++.+..|....+|++++.+-.-+++++...|++++++++++++||.|.+..+|..+.+.|+++..++
T Consensus 104 g~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRP 170 (346)
T KOG4510|consen 104 GFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRP 170 (346)
T ss_pred hhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecC
Confidence 6778888889999999999999999999999999999999999999999999999999999886643
No 87
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.20 E-value=0.031 Score=50.06 Aligned_cols=66 Identities=18% Similarity=0.153 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhChHHH-HHHHHHHHHHHHHHHHH-HhcCC-----CchhhhhhhhHhHhHHHhhhhhccccC
Q 021135 222 SQFFISYTIRTFGALTF-ATIMTTRQLVSIVLSCV-WFRHP-----LSWEQCIGSIIVFGALYTRSFFKKVSE 287 (317)
Q Consensus 222 g~~~~~~~l~~~~a~~~-si~~~~~~v~aiils~l-~f~e~-----~t~~~~~G~~lv~~Gi~~~~~~k~~~~ 287 (317)
|+.+..-.+++.|-... .+.++..-+.....+-+ +||.+ -.+.+++|.++++.|..++..-|.+.+
T Consensus 68 gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~ 140 (254)
T PF07857_consen 68 GNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEK 140 (254)
T ss_pred CceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCC
Confidence 33333334455543322 23333344445555543 56543 567889999999988777766665543
No 88
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.19 E-value=0.24 Score=40.61 Aligned_cols=136 Identities=12% Similarity=0.147 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchHHHHHHHHHHHH
Q 021135 139 VWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTV 218 (317)
Q Consensus 139 ~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~il~l~~~ 218 (317)
++.++..+.+-.+-.+....+.++.+..+ +|.-..+.....+++......+.... ...+... .+.-|+..+ .
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~-spl~As~isf~vGt~~L~~l~l~~~~-~~~~a~~--~~~pwW~~~----G 75 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLG-SPLLASLISFLVGTVLLLILLLIKQG-HPGLAAV--ASAPWWAWI----G 75 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhcC-CCchhhc--cCCchHHHH----c
Confidence 45566667777777788888888876544 56655666666666665554433221 1111211 122233221 2
Q ss_pred HHHHHHHHHH---HHHhhChHHHHHHHHH-HHHHHHHHHHHHhc----CCCchhhhhhhhHhHhHHHhhhhh
Q 021135 219 ATTSQFFISY---TIRTFGALTFATIMTT-RQLVSIVLSCVWFR----HPLSWEQCIGSIIVFGALYTRSFF 282 (317)
Q Consensus 219 ~~~g~~~~~~---~l~~~~a~~~si~~~~-~~v~aiils~l~f~----e~~t~~~~~G~~lv~~Gi~~~~~~ 282 (317)
+.+|..+++. ..++.+++++..+... +-+.+.+++.+=+. +++++..++|++++++|+++....
T Consensus 76 G~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~ 147 (150)
T COG3238 76 GLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF 147 (150)
T ss_pred cchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence 3455555554 3577887777666555 44555666665443 589999999999999996665443
No 89
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=95.98 E-value=0.63 Score=43.29 Aligned_cols=61 Identities=15% Similarity=0.213 Sum_probs=55.7
Q ss_pred HHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhcc
Q 021135 224 FFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKK 284 (317)
Q Consensus 224 ~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k~ 284 (317)
...+.++.+.+|.+..+...++...+.+++++++++++++.||...++.++|+.+.+....
T Consensus 107 nl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~ 167 (345)
T KOG2234|consen 107 NLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSL 167 (345)
T ss_pred hHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCC
Confidence 4677789999999999999999999999999999999999999999999999988884433
No 90
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=95.33 E-value=0.24 Score=40.20 Aligned_cols=99 Identities=12% Similarity=0.130 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHHHHHhhhcCChhHH-HHHhhcchHHHHHHHHH--
Q 021135 19 MIFAVSGIMTTLVIYGILQASRKAIDPVAPVYKYCLVSMSNILTTTCQYEALKYVSFPVQ-TLAKCAKMIPVMIWGTL-- 95 (317)
Q Consensus 19 ~~~~~~gi~~~~~~~g~~qe~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~aL~~~s~~~~-~ll~s~~pi~v~i~~~l-- 95 (317)
+.....|.......+-+.++...+..++.||+.|+ -|++......+...+...+.++.. .+.-.-+.+..++++.+
T Consensus 35 ~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~l-GG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~ 113 (138)
T PF04657_consen 35 FISFGVGFILLLIILLITGRPSLASLSSVPWWAYL-GGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGL 113 (138)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhccCChHHhc-cHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccc
Confidence 33344444444444433433221223356887776 566777777888888888887755 34445566667777765
Q ss_pred --HhccccchhHHHHHHHHHHhHHH
Q 021135 96 --IMQKRYKGYDYFLALLVTLGCSI 118 (317)
Q Consensus 96 --~~k~~~~~~~~~~~~l~~~Gv~l 118 (317)
.-|+++++++.++++++++|+.+
T Consensus 114 fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 114 FGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 46799999999999999999864
No 91
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=94.67 E-value=0.017 Score=50.96 Aligned_cols=132 Identities=14% Similarity=0.027 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchHHHHHHHHHHHHHH
Q 021135 141 GVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVAT 220 (317)
Q Consensus 141 G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~il~l~~~~~ 220 (317)
+++.+++=++.|+...... .|.+-+|++...-+.+-+.++.+...+..... ..+..+..-+.-+..=.
T Consensus 3 ~~liaL~P~l~WGsip~v~----~k~GG~p~qQ~lGtT~GALifaiiv~~~~~p~--------~T~~~~iv~~isG~~Ws 70 (288)
T COG4975 3 DLLIALLPALGWGSIPLVA----NKFGGKPYQQTLGTTLGALIFAIIVFLFVSPE--------LTLTIFIVGFISGAFWS 70 (288)
T ss_pred hHHHHHHHHHHhcccceee----eecCCChhHhhhhccHHHHHHHHHHheeecCc--------cchhhHHHHHHhhhHhh
Confidence 3556666777888765544 34456788877666655555555543322110 11122211111133446
Q ss_pred HHHHHHHHHHHhhChHHHHHHHHH-HHHHHHHHHHHHhcCCCchhhhh----hhhHhHhHHHhhhhhcc
Q 021135 221 TSQFFISYTIRTFGALTFATIMTT-RQLVSIVLSCVWFRHPLSWEQCI----GSIIVFGALYTRSFFKK 284 (317)
Q Consensus 221 ~g~~~~~~~l~~~~a~~~si~~~~-~~v~aiils~l~f~e~~t~~~~~----G~~lv~~Gi~~~~~~k~ 284 (317)
+||..-+.+++..+.+.+.++++- +-+-+.+++++.|||--++.|.+ ..++++.|+++..+.++
T Consensus 71 ~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 71 FGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred hhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence 899999999999998888887775 56677899999999988887743 44556678888776554
No 92
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=94.62 E-value=0.086 Score=46.77 Aligned_cols=58 Identities=9% Similarity=-0.002 Sum_probs=52.6
Q ss_pred HHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhc
Q 021135 64 TCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFIL 121 (317)
Q Consensus 64 ~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~ 121 (317)
.+...+|+.+|..++.++-+..|..-.+.++++++|+++..||++++.++.+.+-.+.
T Consensus 225 sLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~l 282 (292)
T COG5006 225 SLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTL 282 (292)
T ss_pred HHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcccc
Confidence 5788999999999999999999999999999999999999999999998887664443
No 93
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=94.61 E-value=0.064 Score=41.91 Aligned_cols=60 Identities=5% Similarity=0.058 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHhhChHHHHHHH-HHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHh
Q 021135 219 ATTSQFFISYTIRTFGALTFATIM-TTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYT 278 (317)
Q Consensus 219 ~~~g~~~~~~~l~~~~a~~~si~~-~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~ 278 (317)
+..|...+++.+++.+-+.+.++. .+.-+++.+.++++.+|..++..++|+.+++.|+.+
T Consensus 51 Nq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 51 NQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 556677888899999988888885 788899999998888888999999999999999754
No 94
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=93.80 E-value=2 Score=39.94 Aligned_cols=144 Identities=9% Similarity=0.036 Sum_probs=77.2
Q ss_pred CchHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHH-HHHHHHHHHHHHH---HHhCchhHHhHhhhcch-HHHH
Q 021135 136 ENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFY-TTLCSCVLSLSGL---ILEGHLFLAIDFVYHHL-DCFF 210 (317)
Q Consensus 136 ~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~-~~~~ 210 (317)
.....|+++..++.++.+.+.+=.|| .+.-.||..-. +..++.++ .|.. +..+++.+ .....| +.+.
T Consensus 3 ~~ii~Gii~h~iGg~~~~sfy~P~kk----vk~WsWEs~Wlv~gi~swli-~P~~~a~l~ip~~~~---i~~~~~~~~l~ 74 (344)
T PF06379_consen 3 SAIILGIIFHAIGGFASGSFYVPFKK----VKGWSWESYWLVQGIFSWLI-VPWLWALLAIPDFFS---IYSATPASTLF 74 (344)
T ss_pred chHHHHHHHHHHHHHHhhhhccchhh----cCCccHHHHHHHHHHHHHHH-HHHHHHHHhCCcHHH---HHHhCChhHHH
Confidence 34578999999999998877766544 34445665432 33344333 3432 22233322 333333 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhChH-HHHHHHHHHHHHHHHHHHHH-------hcCCCchhhhhhhhHhHhHHHhhhhh
Q 021135 211 DVALLSTVATTSQFFISYTIRTFGAL-TFATIMTTRQLVSIVLSCVW-------FRHPLSWEQCIGSIIVFGALYTRSFF 282 (317)
Q Consensus 211 ~il~l~~~~~~g~~~~~~~l~~~~a~-~~si~~~~~~v~aiils~l~-------f~e~~t~~~~~G~~lv~~Gi~~~~~~ 282 (317)
....+++.=-+|.+.+-.++|+.+-+ ..++..-+..++..++--++ ++++-...-++|.++.++|+.+..+.
T Consensus 75 ~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A 154 (344)
T PF06379_consen 75 WTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA 154 (344)
T ss_pred HHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence 33333443335555555667766633 23333333333333333333 23344557789999999999888776
Q ss_pred ccccC
Q 021135 283 KKVSE 287 (317)
Q Consensus 283 k~~~~ 287 (317)
-.+|+
T Consensus 155 G~~Ke 159 (344)
T PF06379_consen 155 GSMKE 159 (344)
T ss_pred HHhhh
Confidence 54433
No 95
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.68 E-value=1.5 Score=40.14 Aligned_cols=128 Identities=12% Similarity=0.072 Sum_probs=92.6
Q ss_pred hhhhHHHHHHHHc-cCC------CCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchHHHHHHHHHHHHHHHHHH
Q 021135 152 DGFTSTFQDKLFK-GYD------MEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVATTSQF 224 (317)
Q Consensus 152 ~a~~~v~~~~l~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~il~l~~~~~~g~~ 224 (317)
+-..+++|||+.. .|+ .++.-+.+.+.+.+.+++...+-... -...+...|+..-+.++.+.++..
T Consensus 26 ~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k-------~~~~~~apl~~y~~is~tn~~s~~ 98 (327)
T KOG1581|consen 26 FLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWK-------KELSGVAPLYKYSLISFTNTLSSW 98 (327)
T ss_pred HHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhccc-------ccCCCCCchhHHhHHHHHhhcchH
Confidence 3345678999854 341 24444555666666655533321110 001223345555566778888888
Q ss_pred HHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhcccc
Q 021135 225 FISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKVS 286 (317)
Q Consensus 225 ~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k~~~ 286 (317)
|-+.++|+++=-+..+.-..+-+-..+.+.++.+.+.++...+-..+|-.|+....+.++++
T Consensus 99 ~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 99 CGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred HHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999998888887765
No 96
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=93.44 E-value=0.16 Score=47.52 Aligned_cols=77 Identities=5% Similarity=0.121 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhccccCCCCCCCCC
Q 021135 219 ATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKVSEKPRPSEHP 295 (317)
Q Consensus 219 ~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k~~~~~~~~~~~~ 295 (317)
=.++++.+..+++..+....+++..+.-+|++.++.++-+|.+|+...++..+-++|+++.+..+.+++.+.+++.|
T Consensus 169 WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~ 245 (416)
T KOG2765|consen 169 WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRP 245 (416)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccch
Confidence 35677888889999999999999999999999999999999999999999999999999999887766554444433
No 97
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=92.62 E-value=0.11 Score=45.48 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHH
Q 021135 57 MSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSI 118 (317)
Q Consensus 57 ~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l 118 (317)
+.......+.+..++|.+..+..+...+.++++.+++.++++++++..+++++.+++.|+.+
T Consensus 160 ~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 160 LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 33444455667778888888888999999999999999999999999999999999988754
No 98
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=91.79 E-value=0.26 Score=45.69 Aligned_cols=122 Identities=10% Similarity=0.032 Sum_probs=75.0
Q ss_pred HhhhhHHHHHHHHccCC-CCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 021135 151 FDGFTSTFQDKLFKGYD-MEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVATTSQFFISYT 229 (317)
Q Consensus 151 ~~a~~~v~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~il~l~~~~~~g~~~~~~~ 229 (317)
+.....+++++++++++ .-|+.+.......+++.....-.+ +.. +.... .++..|..++-++++-.++..+-+-+
T Consensus 28 ~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l-~~~-~~~~~--~~~~~~~~llpl~~~~~~~~v~~n~S 103 (316)
T KOG1441|consen 28 LSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVL-KLV-PPSKI--SSKLPLRTLLPLGLVFCISHVLGNVS 103 (316)
T ss_pred hheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHh-cCC-CCCcc--ccccchHHHHHHHHHHHHHHHhcchh
Confidence 33344556777776443 234444333334444433332211 110 10000 12234666666787888888888889
Q ss_pred HHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHH
Q 021135 230 IRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGAL 276 (317)
Q Consensus 230 l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi 276 (317)
+++.+-..+.++-.+.|+++++++.++.+|..+...+.-.+.+..|+
T Consensus 104 l~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV 150 (316)
T KOG1441|consen 104 LSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGV 150 (316)
T ss_pred hhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeE
Confidence 99999999999999999999999999999998875444443333333
No 99
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=91.41 E-value=0.36 Score=42.45 Aligned_cols=74 Identities=8% Similarity=0.172 Sum_probs=61.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhc
Q 021135 48 PVYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFIL 121 (317)
Q Consensus 48 ~~~~~~~~s~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~ 121 (317)
-|+.+..+++..+++.++.+.-..+...-+-.+...+.-.++.+.+.++++..++.|||++..+++.+...-..
T Consensus 240 ~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~ 313 (337)
T KOG1580|consen 240 VFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVV 313 (337)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhh
Confidence 35677888888888988888888776655666777778889999999999999999999999999998776543
No 100
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=90.45 E-value=0.28 Score=41.96 Aligned_cols=63 Identities=8% Similarity=0.217 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhc
Q 021135 221 TSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFK 283 (317)
Q Consensus 221 ~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k 283 (317)
.+++.+..++++.+|+.++-+....+.+..+++++++++.+.-..++...+.+.|++...+..
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~D 127 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYAD 127 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEecc
Confidence 455677789999999999999999999999999999999999999999999999987766544
No 101
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=89.96 E-value=4.3 Score=31.11 Aligned_cols=93 Identities=14% Similarity=0.217 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHH-----HHHHHHHHHHhhhcCChh-HHHHHhhcchHHHHHHHH
Q 021135 21 FAVSGIMTTLVIYGILQASRKAIDPVAPVYKYCLVSMS-----NILTTTCQYEALKYVSFP-VQTLAKCAKMIPVMIWGT 94 (317)
Q Consensus 21 ~~~~gi~~~~~~~g~~qe~~~~~~~~~~~~~~~~~s~~-----~~~~~~~~~~aL~~~s~~-~~~ll~s~~pi~v~i~~~ 94 (317)
..+.-++.++.+||=+. .++..|++..+..|=. |++..-.+-.+.+..|.+ ..++=...+....++++.
T Consensus 7 L~~SN~FMTfAWYGHLK-----~~~~~pl~~ail~SWgIAffEY~l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv 81 (108)
T PF04342_consen 7 LILSNIFMTFAWYGHLK-----FKSSKPLWIAILISWGIAFFEYCLQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSV 81 (108)
T ss_pred HHHHHHHHHHHHHHHhh-----ccccCcHHHHHHHHHHHHHHHHHHhCcchhhhccccCHHHHHHHHHHHhhheeHHHHH
Confidence 44456788888888773 1223577665555522 222222222333332322 122222334445567788
Q ss_pred HHhccccchhHHHHHHHHHHhHHH
Q 021135 95 LIMQKRYKGYDYFLALLVTLGCSI 118 (317)
Q Consensus 95 l~~k~~~~~~~~~~~~l~~~Gv~l 118 (317)
+++||++++++..+-+.++.++..
T Consensus 82 ~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 82 FYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHhCCCccHHHHHHHHHHHHhhhe
Confidence 999999999999988887766544
No 102
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=87.37 E-value=1.5 Score=39.70 Aligned_cols=66 Identities=11% Similarity=0.113 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhh
Q 021135 216 STVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSF 281 (317)
Q Consensus 216 ~~~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~ 281 (317)
++|-..|....+-++...+|+...+.--...+|+-++|..++++.++..||+|+..+..|+...-.
T Consensus 93 al~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 93 ALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence 345555666666677778888888888888899999999999999999999999999999875543
No 103
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=86.84 E-value=0.91 Score=34.72 Aligned_cols=70 Identities=13% Similarity=0.221 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCChhHHH-HHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHh
Q 021135 50 YKYCLVSMSNILTTTCQYEALKYVSFPVQT-LAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIF 119 (317)
Q Consensus 50 ~~~~~~s~~~~~~~~~~~~aL~~~s~~~~~-ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~ 119 (317)
++|.+.-+.+-++..++|.-|+..+.+.++ +-.++.-.++.+.+..+..|....+..++..++++|+.+.
T Consensus 53 w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 53 WEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 467777778888889999999998887654 5677788899999988776777777899999999998765
No 104
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.65 E-value=25 Score=32.50 Aligned_cols=131 Identities=12% Similarity=0.089 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHccCCCC-HHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchHHHHHHHHHHHHHH
Q 021135 142 VSLMVGYLGFDGFTSTFQDKLFKGYDME-IHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVAT 220 (317)
Q Consensus 142 ~~~~l~a~~~~a~~~v~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~il~l~~~~~ 220 (317)
...++...++.-...+.+|.+..+|+-+ ..-++.++++.+++.....-. .| +.+..++-...+..|..+-.+ .
T Consensus 14 l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~-~~-lv~~~~l~~~~~kk~~P~~~l----f 87 (314)
T KOG1444|consen 14 LLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKR-LG-LVNFRPLDLRTAKKWFPVSLL----F 87 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH-hc-eeecCCcChHHHHHHccHHHH----H
Confidence 3334444444445556666667777533 234445777777665443311 11 100000001122333322111 1
Q ss_pred HHH-HHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHh
Q 021135 221 TSQ-FFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYT 278 (317)
Q Consensus 221 ~g~-~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~ 278 (317)
.+. +.-...+++.+-...+++-.+.++++.+...++|+..++..-|......++|-..
T Consensus 88 ~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~ 146 (314)
T KOG1444|consen 88 VGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVA 146 (314)
T ss_pred HHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHh
Confidence 111 2233468999999999999999999999999999999999999999888877543
No 105
>PRK02237 hypothetical protein; Provisional
Probab=83.34 E-value=19 Score=27.81 Aligned_cols=36 Identities=17% Similarity=0.393 Sum_probs=31.4
Q ss_pred HHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccC
Q 021135 88 PVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFP 123 (317)
Q Consensus 88 ~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~ 123 (317)
...+..+.+-|+|+++.++++..++++|+.++...|
T Consensus 72 ~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 72 GSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 345778899999999999999999999999987653
No 106
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=83.11 E-value=8.7 Score=32.63 Aligned_cols=85 Identities=18% Similarity=0.194 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHH-
Q 021135 17 LKMIFAVSGIMTTLVIYGILQASRKAIDPVAPVYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTL- 95 (317)
Q Consensus 17 ~~~~~~~~gi~~~~~~~g~~qe~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l- 95 (317)
..++..+.|-+..+..|.|.-..+.+...+-++++++.......+-..+-+.+-.++|.+.. -...|+...+.+.+
T Consensus 129 tlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~sm~lWi~v~i~t~~lPtslN---~~L~pi~l~IiGav~ 205 (226)
T COG4858 129 TLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVLSMLLWIAVMIATVFLPTSLN---PQLPPIALTIIGAVI 205 (226)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHHHHHHHHhhCCCcCC---cCCchHHHHHHHHHH
Confidence 34556677788888888887655544444567777776665544444444555556665543 23456665555543
Q ss_pred -----Hhccccchh
Q 021135 96 -----IMQKRYKGY 104 (317)
Q Consensus 96 -----~~k~~~~~~ 104 (317)
.+|||++.+
T Consensus 206 lalRfylkkk~NIq 219 (226)
T COG4858 206 LALRFYLKKKKNIQ 219 (226)
T ss_pred HHHHHHHHHhhccc
Confidence 345555543
No 107
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.88 E-value=24 Score=26.74 Aligned_cols=89 Identities=15% Similarity=0.170 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHH-----HHHHHHHHHhhhcCChhHHHHHhhcc----hHHHHHH
Q 021135 22 AVSGIMTTLVIYGILQASRKAIDPVAPVYKYCLVSMSN-----ILTTTCQYEALKYVSFPVQTLAKCAK----MIPVMIW 92 (317)
Q Consensus 22 ~~~gi~~~~~~~g~~qe~~~~~~~~~~~~~~~~~s~~~-----~~~~~~~~~aL~~~s~~~~~ll~s~~----pi~v~i~ 92 (317)
...-+|..|.+||-+-+. +.|+...+..|=.. ++..-.+-.+-+-. +..++ |.+. ...-..+
T Consensus 16 ~~SNvFMTFAWYghLk~~------~~pl~~~i~~SWGIA~fEY~LqvPaNRiG~~v~--s~~QL-K~mQEVItL~iFv~F 86 (116)
T COG3169 16 IGSNVFMTFAWYGHLKFT------NKPLVIVILASWGIAFFEYLLQVPANRIGHQVY--SAAQL-KTMQEVITLAIFVPF 86 (116)
T ss_pred HhhHHHHHHHHHHHHhcc------CCchhHHHHHHhhHHHHHHHHhCccchhhhhhc--cHHHH-HHHHHHHHHHHHHHH
Confidence 335678889999877321 24565444433211 11111111222222 22222 2222 2233467
Q ss_pred HHHHhccccchhHHHHHHHHHHhHHHh
Q 021135 93 GTLIMQKRYKGYDYFLALLVTLGCSIF 119 (317)
Q Consensus 93 ~~l~~k~~~~~~~~~~~~l~~~Gv~l~ 119 (317)
+.+++||++++.++.+..++..|+.++
T Consensus 87 svfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 87 SVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 889999999999999998888888765
No 108
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=79.43 E-value=26 Score=26.94 Aligned_cols=38 Identities=24% Similarity=0.589 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccC
Q 021135 86 MIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFP 123 (317)
Q Consensus 86 pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~ 123 (317)
.+...+..+.+-|+|+++.++++..++++|+.++...|
T Consensus 68 I~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 68 IVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred HHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 33456788899999999999999999999999987653
No 109
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.97 E-value=1 Score=41.47 Aligned_cols=124 Identities=11% Similarity=0.101 Sum_probs=79.6
Q ss_pred CchHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhcchHHHHHHHHH
Q 021135 136 ENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALL 215 (317)
Q Consensus 136 ~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~il~l 215 (317)
..+..|.+++..+.++-+..-+.++|-.+|.+.... -.++ .+..+. .+ ..||.-+.
T Consensus 17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~-------------------ra~~--gg~~yl-~~-~~Ww~G~l- 72 (335)
T KOG2922|consen 17 SDNIIGLVLAISSSIFIGSSFILKKKGLKRAGASGL-------------------RAGE--GGYGYL-KE-PLWWAGML- 72 (335)
T ss_pred cCceeeeeehhhccEEEeeehhhhHHHHHHHhhhcc-------------------cccC--CCcchh-hh-HHHHHHHH-
Confidence 455679888888877777766666665443211000 0011 011111 12 23433211
Q ss_pred HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhccc
Q 021135 216 STVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKV 285 (317)
Q Consensus 216 ~~~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k~~ 285 (317)
.-.+|...-|.+...-+++..+.++.+.-+.+.+++..+++|.+++...+|.++.++|-..-....++
T Consensus 73 --tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~ 140 (335)
T KOG2922|consen 73 --TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPK 140 (335)
T ss_pred --HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCc
Confidence 22355555555666778899999999999999999999999999999999999999886555444443
No 110
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=78.57 E-value=42 Score=28.85 Aligned_cols=24 Identities=8% Similarity=0.102 Sum_probs=19.2
Q ss_pred HHHHHHhcCCCchhhhhhhhHhHh
Q 021135 251 VLSCVWFRHPLSWEQCIGSIIVFG 274 (317)
Q Consensus 251 ils~l~f~e~~t~~~~~G~~lv~~ 274 (317)
.++..+|++..=+...+|..|..+
T Consensus 134 ~iG~~L~t~y~l~fe~~silLLvA 157 (198)
T PRK06638 134 AIGILLFTDYLLPFELASVLLLVA 157 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888889999988663
No 111
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=78.19 E-value=2.4 Score=32.48 Aligned_cols=29 Identities=24% Similarity=0.574 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCCchhhhhhhhHhHhHHHh
Q 021135 250 IVLSCVWFRHPLSWEQCIGSIIVFGALYT 278 (317)
Q Consensus 250 iils~l~f~e~~t~~~~~G~~lv~~Gi~~ 278 (317)
..+|+++++|+++|.+..|.++++++++.
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 45678899999999999999999988754
No 112
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.23 E-value=45 Score=27.43 Aligned_cols=74 Identities=12% Similarity=0.062 Sum_probs=43.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhhcCChh-HHHHHhhcchHHHHHHHHHH----hccccchhHHHHHHHHHHhHHHh
Q 021135 45 PVAPVYKYCLVSMSNILTTTCQYEALKYVSFP-VQTLAKCAKMIPVMIWGTLI----MQKRYKGYDYFLALLVTLGCSIF 119 (317)
Q Consensus 45 ~~~~~~~~~~~s~~~~~~~~~~~~aL~~~s~~-~~~ll~s~~pi~v~i~~~l~----~k~~~~~~~~~~~~l~~~Gv~l~ 119 (317)
++.||+.++. |++.......+......+-.. +..+.-+...+.-++.+.+= -+++++..++++++++++|+.++
T Consensus 66 ~~~pwW~~~G-G~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 66 ASAPWWAWIG-GLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred cCCchHHHHc-cchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 4678877743 222222222222223334433 34555666666666665432 24899999999999999995554
No 113
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=74.33 E-value=5.8 Score=34.84 Aligned_cols=72 Identities=13% Similarity=0.209 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhcc
Q 021135 51 KYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILF 122 (317)
Q Consensus 51 ~~~~~s~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~ 122 (317)
..++.|++.++..+++-..++-++..++.+..+..-.+..+-+.++++++.++..++++++.+...++...+
T Consensus 226 am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYava 297 (309)
T COG5070 226 AMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVA 297 (309)
T ss_pred HHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777788888899999889999999988999999999999999999999999988887777654
No 114
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=72.45 E-value=2.3 Score=38.10 Aligned_cols=76 Identities=13% Similarity=0.147 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhc
Q 021135 208 CFFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFK 283 (317)
Q Consensus 208 ~~~~il~l~~~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k 283 (317)
.|..-+.+++.-.=++++...+.++.+-+......+-..+...+++|++++.+-.+.++.|.++.++|+.......
T Consensus 77 ~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sD 152 (336)
T KOG2766|consen 77 KWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSD 152 (336)
T ss_pred HHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEee
Confidence 3555455566666677777778888888888899999999999999999999999999999999999987655544
No 115
>PRK02237 hypothetical protein; Provisional
Probab=72.18 E-value=43 Score=25.86 Aligned_cols=48 Identities=13% Similarity=-0.042 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhc
Q 021135 236 LTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFK 283 (317)
Q Consensus 236 ~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k 283 (317)
-..+..+-.-.+.++++.+.+-|++++.+-++|.++.+.|+.+..+.+
T Consensus 60 RvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 60 RVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred hHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 446667777788899999999999999999999999999986655444
No 116
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.92 E-value=4.9 Score=30.37 Aligned_cols=30 Identities=23% Similarity=0.652 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCchhhhhhhhHhHhHHHhh
Q 021135 250 IVLSCVWFRHPLSWEQCIGSIIVFGALYTR 279 (317)
Q Consensus 250 iils~l~f~e~~t~~~~~G~~lv~~Gi~~~ 279 (317)
+.+|++.++||+.|.++.|..++.+|+++.
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 467889999999999999999999988654
No 117
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=70.61 E-value=32 Score=26.47 Aligned_cols=47 Identities=13% Similarity=0.008 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhc
Q 021135 237 TFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFK 283 (317)
Q Consensus 237 ~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k 283 (317)
..+..+-.-.+.++++.+.+-+++++.+-++|..+.+.|+.+..+.+
T Consensus 59 vYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 59 VYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred HHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 45566667778899999999999999999999999999987665544
No 118
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=70.07 E-value=6.3 Score=27.51 Aligned_cols=24 Identities=13% Similarity=0.045 Sum_probs=14.0
Q ss_pred hhhhhhHhHhHHHhhh-hhccccCC
Q 021135 265 QCIGSIIVFGALYTRS-FFKKVSEK 288 (317)
Q Consensus 265 ~~~G~~lv~~Gi~~~~-~~k~~~~~ 288 (317)
-.+++++++.|+.+|. +.|++..+
T Consensus 6 iLi~ICVaii~lIlY~iYnr~~~~q 30 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRKKTTQ 30 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccC
Confidence 4567788777655554 44444443
No 119
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=69.20 E-value=1.5 Score=39.51 Aligned_cols=93 Identities=12% Similarity=0.206 Sum_probs=0.0
Q ss_pred hhcCChhHHHHHhhcchHHHH-HHHHHHhcccc-chhHHHHHHHHHHhHHHhhccCCCCCCCCCCCCCCchHHHHHHHHH
Q 021135 70 LKYVSFPVQTLAKCAKMIPVM-IWGTLIMQKRY-KGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVG 147 (317)
Q Consensus 70 L~~~s~~~~~ll~s~~pi~v~-i~~~l~~k~~~-~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~l~ 147 (317)
++-.+-+..+++.|...+.++ |+-.++||||. -+.-.++++++++-+.+...- ... ....++|+++.++
T Consensus 44 msd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~----tLt-----GQ~LF~Gi~~l~l 114 (381)
T PF05297_consen 44 MSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLW----TLT-----GQTLFVGIVILFL 114 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHH----Hhh-----ccHHHHHHHHHHH
Confidence 334444444555555444433 33345566654 344455565555544444332 121 1344567754433
Q ss_pred ----HHHHhhhhHHHHHHHHccCCCCHHHHHHH
Q 021135 148 ----YLGFDGFTSTFQDKLFKGYDMEIHNQIFY 176 (317)
Q Consensus 148 ----a~~~~a~~~v~~~~l~~~~~~~~~~~~~~ 176 (317)
++..| +| . .++++++.+.|+++.+
T Consensus 115 ~~lLaL~vW-~Y---m-~lLr~~GAs~WtiLaF 142 (381)
T PF05297_consen 115 CCLLALGVW-FY---M-WLLRELGASFWTILAF 142 (381)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHH-HH---H-HHHHHhhhHHHHHHHH
Confidence 22222 11 2 2567888888887654
No 120
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=68.33 E-value=59 Score=31.91 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=19.5
Q ss_pred CchhhhhhhhHhHhHHHhhhhhcc
Q 021135 261 LSWEQCIGSIIVFGALYTRSFFKK 284 (317)
Q Consensus 261 ~t~~~~~G~~lv~~Gi~~~~~~k~ 284 (317)
++..||+.+.++++|+++..+.++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~ 277 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPK 277 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc
Confidence 799999999999999877665443
No 121
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=65.94 E-value=30 Score=31.42 Aligned_cols=47 Identities=17% Similarity=0.240 Sum_probs=37.2
Q ss_pred hHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhcc
Q 021135 76 PVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILF 122 (317)
Q Consensus 76 ~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~ 122 (317)
.++.......=-.+.+++++++.|+++....-+..+++.|+.+-...
T Consensus 287 ~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ys 333 (367)
T KOG1582|consen 287 LIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYS 333 (367)
T ss_pred hHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhccc
Confidence 34444444445578899999999999999999999999999998765
No 122
>PHA03049 IMV membrane protein; Provisional
Probab=62.98 E-value=10 Score=26.41 Aligned_cols=37 Identities=22% Similarity=0.219 Sum_probs=20.6
Q ss_pred hhhhhhHhHhHHHhhhh-hccccCC-CCCCCCCCccccc
Q 021135 265 QCIGSIIVFGALYTRSF-FKKVSEK-PRPSEHPMENMHN 301 (317)
Q Consensus 265 ~~~G~~lv~~Gi~~~~~-~k~~~~~-~~~~~~~~~~~~~ 301 (317)
-.+++++++.|+.+|-. .|++..+ .+|++|..|+.|+
T Consensus 6 ~l~iICVaIi~lIvYgiYnkk~~~q~~~p~~e~ye~~e~ 44 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNKKTTTSQNPPSQEKYEKMED 44 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCChhhccCchh
Confidence 45677777777655544 4444443 3334455555554
No 123
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=57.43 E-value=11 Score=28.89 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=30.8
Q ss_pred HHHHHHHHHhccccchhHHHHHHHHHHhHHHhhccC
Q 021135 88 PVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFP 123 (317)
Q Consensus 88 ~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~~ 123 (317)
...+..+++-|+|+.+.++.+.+++++|+.++...+
T Consensus 71 ~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 71 ASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred HHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 355678888899999999999999999998887653
No 124
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=56.91 E-value=26 Score=28.08 Aligned_cols=13 Identities=15% Similarity=0.296 Sum_probs=6.2
Q ss_pred hhhhhHhHhHHHh
Q 021135 266 CIGSIIVFGALYT 278 (317)
Q Consensus 266 ~~G~~lv~~Gi~~ 278 (317)
++|..+...|+.+
T Consensus 90 i~g~~~~~~G~~~ 102 (136)
T PF08507_consen 90 IIGLLLFLVGVIY 102 (136)
T ss_pred HHHHHHHHHHHHH
Confidence 3444455555443
No 125
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=56.19 E-value=14 Score=30.79 Aligned_cols=8 Identities=13% Similarity=0.044 Sum_probs=3.2
Q ss_pred cccccccc
Q 021135 299 MHNGASSL 306 (317)
Q Consensus 299 ~~~~~~~~ 306 (317)
++-||..+
T Consensus 137 ~~~Em~pL 144 (163)
T PF06679_consen 137 ENVEMAPL 144 (163)
T ss_pred ccceeccc
Confidence 33344433
No 126
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=53.35 E-value=12 Score=34.49 Aligned_cols=64 Identities=9% Similarity=0.030 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHhhChHHHHHHHHH-HHHHHHHHHHHHhcCCCc--hhhhhhhhHhHhHHHhhhh
Q 021135 217 TVATTSQFFISYTIRTFGALTFATIMTT-RQLVSIVLSCVWFRHPLS--WEQCIGSIIVFGALYTRSF 281 (317)
Q Consensus 217 ~~~~~g~~~~~~~l~~~~a~~~si~~~~-~~v~aiils~l~f~e~~t--~~~~~G~~lv~~Gi~~~~~ 281 (317)
+.-.+|+++.-+++...|-+.+-+++.- .-++.+++.++ .+.+.. ..-+.|.+++++++.+...
T Consensus 80 vvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lga~ 146 (336)
T PF07168_consen 80 VVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILGAA 146 (336)
T ss_pred HhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHHHH
Confidence 3344677777776666665544443321 11112222222 344554 3456677777777665443
No 127
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=52.45 E-value=2.7e+02 Score=28.38 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=19.8
Q ss_pred CCCCCcccccccccccCCCCCCCCCC
Q 021135 292 SEHPMENMHNGASSLMKGSSPRGGEP 317 (317)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (317)
-+..+|..+||++.-++++||++..|
T Consensus 564 Va~~~~~~~~~~~~~~~~~~~~~~~~ 589 (599)
T PF06609_consen 564 VAVQLEDRKNADKDVLDGDSDTQSSP 589 (599)
T ss_pred hhHHhhcchhcccccccCCCCCCCCC
Confidence 33457777888888889999988765
No 128
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=51.60 E-value=62 Score=27.99 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=26.1
Q ss_pred hChHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhhhhhhhHhH-hHHH
Q 021135 233 FGALTFATIMTTRQLVSIVLSCVWFRHPLS-WEQCIGSIIVF-GALY 277 (317)
Q Consensus 233 ~~a~~~si~~~~~~v~aiils~l~f~e~~t-~~~~~G~~lv~-~Gi~ 277 (317)
..+...+.+..+-|..+..++-.+-+--.. +.+|+|.++.+ .|+.
T Consensus 31 ~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~ 77 (206)
T TIGR02840 31 LSNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIW 77 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence 445556666666666666666654433223 45777776644 5754
No 129
>PF15102 TMEM154: TMEM154 protein family
Probab=46.40 E-value=24 Score=28.77 Aligned_cols=25 Identities=8% Similarity=0.282 Sum_probs=13.4
Q ss_pred hhhhhHhHhHHHhhhhhccccCCCC
Q 021135 266 CIGSIIVFGALYTRSFFKKVSEKPR 290 (317)
Q Consensus 266 ~~G~~lv~~Gi~~~~~~k~~~~~~~ 290 (317)
+++.+|++..+++..+.|||+.+..
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~K~~ 90 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRTKQE 90 (146)
T ss_pred HHHHHHHHHHHHheeEEeecccCCC
Confidence 3444445555666666666555443
No 130
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=46.33 E-value=17 Score=23.03 Aligned_cols=32 Identities=9% Similarity=0.193 Sum_probs=24.3
Q ss_pred hcCCCchhhhhhhhHhH-hHHHhhhhhccccCC
Q 021135 257 FRHPLSWEQCIGSIIVF-GALYTRSFFKKVSEK 288 (317)
Q Consensus 257 f~e~~t~~~~~G~~lv~-~Gi~~~~~~k~~~~~ 288 (317)
|+.+..+...+.++.++ .+.++..+..+|.++
T Consensus 7 F~s~vGL~Sl~vI~~~igm~~~~~~~F~~k~~~ 39 (42)
T PF11346_consen 7 FGSDVGLMSLIVIVFTIGMGVFFIRYFIRKMKE 39 (42)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 88899999988888877 477777776665443
No 131
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=45.61 E-value=2.8e+02 Score=26.60 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=14.2
Q ss_pred hhhhHhHhHHHhhhhhccccC
Q 021135 267 IGSIIVFGALYTRSFFKKVSE 287 (317)
Q Consensus 267 ~G~~lv~~Gi~~~~~~k~~~~ 287 (317)
.|+.+++.|+.+|.+.|+|++
T Consensus 419 ~~~~~~~~g~~~y~~~~~~~~ 439 (445)
T PRK11357 419 CAVIVIATGLPAYAFWAKRSR 439 (445)
T ss_pred HHHHHHHHhhhHHhheechhh
Confidence 567777788877766666544
No 132
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=43.54 E-value=94 Score=28.83 Aligned_cols=76 Identities=13% Similarity=0.174 Sum_probs=54.3
Q ss_pred CCCCchhHHHHHHHHHHHH---HHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHh
Q 021135 44 DPVAPVYKYCLVSMSNILT---TTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIF 119 (317)
Q Consensus 44 ~~~~~~~~~~~~s~~~~~~---~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~ 119 (317)
++..++|-...+++...++ -.+.+.=+..++.-+-.++.--|-+.+.+++.++.+.+++...|++..++..|+..-
T Consensus 235 d~~~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 235 DTGLILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 3334555444444444333 334444455566556667777788999999999999999999999999999999887
No 133
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=42.94 E-value=2.7e+02 Score=27.10 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=19.4
Q ss_pred CCchhhhhhhhHhHhHHHhhhhhcc
Q 021135 260 PLSWEQCIGSIIVFGALYTRSFFKK 284 (317)
Q Consensus 260 ~~t~~~~~G~~lv~~Gi~~~~~~k~ 284 (317)
.-++..++|.++.+..+.+......
T Consensus 282 ~~~~~~iig~i~~~~~v~yss~ra~ 306 (429)
T PF03348_consen 282 WNTWQSIIGLIFTFVSVLYSSFRAS 306 (429)
T ss_pred cchHHHHHHHHHHHHHHHHhccccc
Confidence 4667779999999999888776544
No 134
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=42.81 E-value=13 Score=27.21 Aligned_cols=20 Identities=5% Similarity=-0.133 Sum_probs=13.0
Q ss_pred CcccccccccccCCCCCCCC
Q 021135 296 MENMHNGASSLMKGSSPRGG 315 (317)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~ 315 (317)
.+.-|.+++|.++|+-|+|.
T Consensus 44 ~RIreraEDSGnES~Gd~Ee 63 (81)
T PF00558_consen 44 ERIRERAEDSGNESDGDEEE 63 (81)
T ss_dssp HHHHCTTTCCHCTTTTCCHH
T ss_pred HHHHcccccCCCCCCCcHHH
Confidence 45555667777777777653
No 135
>PF14851 FAM176: FAM176 family
Probab=41.95 E-value=34 Score=28.24 Aligned_cols=7 Identities=14% Similarity=0.401 Sum_probs=2.6
Q ss_pred hHhHhHH
Q 021135 270 IIVFGAL 276 (317)
Q Consensus 270 ~lv~~Gi 276 (317)
++.++-+
T Consensus 35 lLtLcll 41 (153)
T PF14851_consen 35 LLTLCLL 41 (153)
T ss_pred HHHHHHH
Confidence 3333333
No 136
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.43 E-value=7.2 Score=35.34 Aligned_cols=57 Identities=9% Similarity=0.118 Sum_probs=45.0
Q ss_pred HHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhh
Q 021135 224 FFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRS 280 (317)
Q Consensus 224 ~~~~~~l~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~ 280 (317)
.+-++++++.+-...-+--.+..+|++++++++++++-+..-..+..+|+.|..+-.
T Consensus 117 ~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGv 173 (347)
T KOG1442|consen 117 SFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGV 173 (347)
T ss_pred hccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheecc
Confidence 355567777777666666667778999999999999999888888888888876544
No 137
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=40.86 E-value=24 Score=24.78 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=12.9
Q ss_pred HhHHHhhhhhccccCCCCCC
Q 021135 273 FGALYTRSFFKKVSEKPRPS 292 (317)
Q Consensus 273 ~~Gi~~~~~~k~~~~~~~~~ 292 (317)
+.+.+.+.+.|.|+.+|+.+
T Consensus 46 ~lt~ltN~YFK~k~drr~~a 65 (68)
T PF04971_consen 46 LLTYLTNLYFKIKEDRRKAA 65 (68)
T ss_pred HHHHHhHhhhhhhHhhhHhh
Confidence 34556777788777666554
No 138
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=39.37 E-value=1.5e+02 Score=25.56 Aligned_cols=13 Identities=31% Similarity=0.529 Sum_probs=5.6
Q ss_pred CchhHHHHHHHHH
Q 021135 47 APVYKYCLVSMSN 59 (317)
Q Consensus 47 ~~~~~~~~~s~~~ 59 (317)
.++++++.++...
T Consensus 144 ~~~~k~~~~~~~~ 156 (206)
T PF06570_consen 144 PSWWKYILISVLA 156 (206)
T ss_pred cHHHHHHHHHHHH
Confidence 3444444444433
No 139
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=38.56 E-value=77 Score=25.86 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=16.4
Q ss_pred HHhhChHHHHHHHHHHHHHHHHHHHHH
Q 021135 230 IRTFGALTFATIMTTRQLVSIVLSCVW 256 (317)
Q Consensus 230 l~~~~a~~~si~~~~~~v~aiils~l~ 256 (317)
+..-+.+..+.+.++-|.+..+++.++
T Consensus 69 i~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 69 IEEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666665555
No 140
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=38.34 E-value=3e+02 Score=24.74 Aligned_cols=59 Identities=12% Similarity=0.094 Sum_probs=27.1
Q ss_pred HHHHHhhChHHHHHHHHHHHHH---HHHHHHHHhc-CCCchhhhhhhhHhH--hHHHhhhhhccc
Q 021135 227 SYTIRTFGALTFATIMTTRQLV---SIVLSCVWFR-HPLSWEQCIGSIIVF--GALYTRSFFKKV 285 (317)
Q Consensus 227 ~~~l~~~~a~~~si~~~~~~v~---aiils~l~f~-e~~t~~~~~G~~lv~--~Gi~~~~~~k~~ 285 (317)
...+.+.+-.+......-|+.. ..+++.++=. |++|..-...-..++ .|+++....++|
T Consensus 175 ~~~L~~~giv~~~~l~~~Rr~~~v~~~iiaAiiTPpD~isq~llaiPl~lLYEisI~i~~~~~~~ 239 (258)
T PRK10921 175 IVLLCWMGVTTPEDLRKKRPYVLVGAFVVGMLLTPPDVFSQTLLAIPMYCLFEIGVFFSRFYVGK 239 (258)
T ss_pred HHHHHHcCCCCHHHHHhcCcHHhHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3345666666666665566544 3344444443 333332222222222 455555544443
No 141
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=37.28 E-value=20 Score=24.61 Aligned_cols=40 Identities=5% Similarity=-0.036 Sum_probs=22.4
Q ss_pred hhhHhHhHHHhhhhhccccCC-CCCCCCCCccccccccccc
Q 021135 268 GSIIVFGALYTRSFFKKVSEK-PRPSEHPMENMHNGASSLM 307 (317)
Q Consensus 268 G~~lv~~Gi~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~ 307 (317)
-+.+.+.|+++..+.+.||++ .+.+.-+.+++|++.++..
T Consensus 17 ~~~l~fiavi~~ayr~~~K~~~d~aa~~~l~l~Dd~q~~~~ 57 (60)
T COG4736 17 AFTLFFIAVIYFAYRPGKKGEFDEAARGILPLNDDAQDAAG 57 (60)
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHhccCCCCCcchhhhhc
Confidence 345566777777776655443 4444444555555555543
No 142
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=36.67 E-value=3.7e+02 Score=25.33 Aligned_cols=105 Identities=10% Similarity=-0.089 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCChhH--HHHHhhcchHHHHHHHHHHhc-------cccchhHHHHHHHHHHhHHHhhccC
Q 021135 53 CLVSMSNILTTTCQYEALKYVSFPV--QTLAKCAKMIPVMIWGTLIMQ-------KRYKGYDYFLALLVTLGCSIFILFP 123 (317)
Q Consensus 53 ~~~s~~~~~~~~~~~~aL~~~s~~~--~~ll~s~~pi~v~i~~~l~~k-------~~~~~~~~~~~~l~~~Gv~l~~~~~ 123 (317)
+..|++...+....-.+.+|+-.+. .+.+..| .++-.++-.++.+ .+-.....+++++.++|++++....
T Consensus 77 ~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~-~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG 155 (344)
T PF06379_consen 77 FLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLC-AVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAG 155 (344)
T ss_pred HHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHH-HHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHH
Confidence 4445554445555557788866553 2222222 2222222223322 3334567899999999999986643
Q ss_pred CCCC--CCCCCCCCCchHHHHHHHHHHHHHhhhhHHHH
Q 021135 124 SGAD--LSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQ 159 (317)
Q Consensus 124 ~~~~--~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~ 159 (317)
..+| ...+. .+.+.-.|++.++++-+++|..+.-.
T Consensus 156 ~~Ke~~~~~~~-~efn~~kGl~iAv~sGv~Sa~fn~g~ 192 (344)
T PF06379_consen 156 SMKEKELGEEA-KEFNFKKGLIIAVLSGVMSACFNFGL 192 (344)
T ss_pred Hhhhhhhccch-hhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 2111 11111 11223469999888888888776544
No 143
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=36.14 E-value=4e+02 Score=25.59 Aligned_cols=11 Identities=9% Similarity=-0.169 Sum_probs=5.3
Q ss_pred Ccccccccccc
Q 021135 296 MENMHNGASSL 306 (317)
Q Consensus 296 ~~~~~~~~~~~ 306 (317)
.++|+.++|+|
T Consensus 440 ~~~~~~~~~~~ 450 (455)
T TIGR00892 440 GARDKKDAEGD 450 (455)
T ss_pred ccccccccccc
Confidence 44455444444
No 144
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=35.80 E-value=3.3e+02 Score=24.52 Aligned_cols=74 Identities=9% Similarity=0.020 Sum_probs=31.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhh--cCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhh
Q 021135 47 APVYKYCLVSMSNILTTTCQYEALK--YVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFI 120 (317)
Q Consensus 47 ~~~~~~~~~s~~~~~~~~~~~~aL~--~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~ 120 (317)
.+++.+.++++-...+......-++ +-++|.++-.-..-.+...+....-..+|.++++++..++..+-+..+.
T Consensus 52 ~~~~fL~~l~~G~~~gi~~~s~~i~~ll~~yp~~t~~fF~GLIlgSip~l~k~~~~~~~~~~~~~~~g~~i~~~~~ 127 (257)
T PF04018_consen 52 INLKFLLPLGIGILIGILLFSKVISYLLENYPIPTYSFFFGLILGSIPFLYKEIKKFSPKSIIFFLLGAIIALLLS 127 (257)
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHH
Confidence 4566676666654444332222222 2334433332222222222222111224566666655555444444443
No 145
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=35.75 E-value=3.1e+02 Score=24.73 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=18.5
Q ss_pred CchhhhhhhhHhHhHHHhhhhhc
Q 021135 261 LSWEQCIGSIIVFGALYTRSFFK 283 (317)
Q Consensus 261 ~t~~~~~G~~lv~~Gi~~~~~~k 283 (317)
+|..|+++..+++.|+.+..+.+
T Consensus 235 ls~~Q~~sl~~i~~g~~~~~~~~ 257 (269)
T PRK12437 235 LRIAQVISIPLIIIGIILIIYRR 257 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999987654433
No 146
>COG1971 Predicted membrane protein [Function unknown]
Probab=35.22 E-value=69 Score=27.44 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhH-hHHH-hhhhhcc
Q 021135 237 TFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVF-GALY-TRSFFKK 284 (317)
Q Consensus 237 ~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~-~Gi~-~~~~~k~ 284 (317)
..+.+..+-|++....+.++=+-.-.+.+|+|.++.. .|+. +++-.|+
T Consensus 42 ~fG~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e~f~~ 91 (190)
T COG1971 42 IFGVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMIIEGFKN 91 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 3444445555555555555544455678888887755 6764 3333343
No 147
>PF11359 gpUL132: Glycoprotein UL132; InterPro: IPR021023 Glycoprotein UL132 is a low-abundance structural component of Human herpesvirus 5 []. The function of this protein is not fully understood.
Probab=35.17 E-value=60 Score=28.17 Aligned_cols=53 Identities=21% Similarity=0.215 Sum_probs=24.5
Q ss_pred chhhhhhhhHhHhHHHhhhhhccccC-CCC---CCCCCCcccc-cccccccCCCCCCC
Q 021135 262 SWEQCIGSIIVFGALYTRSFFKKVSE-KPR---PSEHPMENMH-NGASSLMKGSSPRG 314 (317)
Q Consensus 262 t~~~~~G~~lv~~Gi~~~~~~k~~~~-~~~---~~~~~~~~~~-~~~~~~~~~~~~~~ 314 (317)
+-..++-..++....++....++..+ -+. ..+-+.++++ .|-++.+.++|-|+
T Consensus 59 Tg~sllsli~VtvaalYsSC~~~pg~~~~f~~de~~~lld~~~d~~~ssl~g~~SRR~ 116 (235)
T PF11359_consen 59 TGFSLLSLIVVTVAALYSSCCRRPGRLTRFDDDEAVNLLDDTDDEGGSSLFGSGSRRG 116 (235)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCCCcccccChhhhhccccccccccccccCCCCcccc
Confidence 33444444555555555554333333 122 2222344333 44444477778776
No 148
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=34.31 E-value=16 Score=23.73 Aligned_cols=27 Identities=7% Similarity=0.228 Sum_probs=14.4
Q ss_pred hHhHhHHHhhhhhccccC-CCCCCCCCC
Q 021135 270 IIVFGALYTRSFFKKVSE-KPRPSEHPM 296 (317)
Q Consensus 270 ~lv~~Gi~~~~~~k~~~~-~~~~~~~~~ 296 (317)
.+++.|+++..+.+++++ -.+.++-|.
T Consensus 19 ~~~F~gi~~w~~~~~~k~~~e~aa~lpl 46 (49)
T PF05545_consen 19 FVFFIGIVIWAYRPRNKKRFEEAANLPL 46 (49)
T ss_pred HHHHHHHHHHHHcccchhhHHHHHccCc
Confidence 345578777777665433 233344343
No 149
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=32.77 E-value=4.7e+02 Score=25.34 Aligned_cols=21 Identities=0% Similarity=-0.047 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 021135 235 ALTFATIMTTRQLVSIVLSCV 255 (317)
Q Consensus 235 a~~~si~~~~~~v~aiils~l 255 (317)
+...++......+.+++.+++
T Consensus 382 g~~~g~~~~~g~lg~~i~~~l 402 (476)
T PLN00028 382 GVISGLTGAGGNVGAVLTQLL 402 (476)
T ss_pred hhhhhhhhccccHHHHHHHHH
Confidence 344444444444444444443
No 150
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=32.69 E-value=39 Score=24.89 Aligned_cols=27 Identities=15% Similarity=0.080 Sum_probs=21.7
Q ss_pred CCchhhhhhhhHhHhHHHhhhhhcccc
Q 021135 260 PLSWEQCIGSIIVFGALYTRSFFKKVS 286 (317)
Q Consensus 260 ~~t~~~~~G~~lv~~Gi~~~~~~k~~~ 286 (317)
.+++..++|+.++++|+.++...+-++
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~P 30 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFRP 30 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 578899999999999988887655443
No 151
>PRK15432 autoinducer 2 ABC transporter permease LsrC; Provisional
Probab=32.37 E-value=1.8e+02 Score=27.33 Aligned_cols=42 Identities=24% Similarity=0.484 Sum_probs=23.7
Q ss_pred chhhhhhhhHhHhHHHhhhhhccc-----cC-------CCCCCCCCCccccccc
Q 021135 262 SWEQCIGSIIVFGALYTRSFFKKV-----SE-------KPRPSEHPMENMHNGA 303 (317)
Q Consensus 262 t~~~~~G~~lv~~Gi~~~~~~k~~-----~~-------~~~~~~~~~~~~~~~~ 303 (317)
.+.++++.++++..+......+++ || +++|+..|-+.+||.+
T Consensus 287 ~~~~ii~g~lll~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (344)
T PRK15432 287 WWNDFIAGLVLLGVLVFDGRLRCALERNLRRQKYARFMTPPPSVKPAASGHNKK 340 (344)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHhhhhhhhhhccccccCCcccccccccccccc
Confidence 456677777777666655554433 11 2455566655555554
No 152
>PF15345 TMEM51: Transmembrane protein 51
Probab=32.33 E-value=40 Score=29.65 Aligned_cols=25 Identities=8% Similarity=0.022 Sum_probs=18.6
Q ss_pred hhhhHhHhHHHhhhhhccccCCCCC
Q 021135 267 IGSIIVFGALYTRSFFKKVSEKPRP 291 (317)
Q Consensus 267 ~G~~lv~~Gi~~~~~~k~~~~~~~~ 291 (317)
.|++|.+..+.+....|+|+++..+
T Consensus 67 ~Gv~LLLLSICL~IR~KRr~rq~~e 91 (233)
T PF15345_consen 67 SGVALLLLSICLSIRDKRRRRQGEE 91 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4677777888888888887766554
No 153
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=31.86 E-value=61 Score=22.04 Aligned_cols=35 Identities=9% Similarity=0.059 Sum_probs=20.6
Q ss_pred hhHhHhHHHhhhhhcccc-----CCCCCCCCCCccccccc
Q 021135 269 SIIVFGALYTRSFFKKVS-----EKPRPSEHPMENMHNGA 303 (317)
Q Consensus 269 ~~lv~~Gi~~~~~~k~~~-----~~~~~~~~~~~~~~~~~ 303 (317)
++++++|++++.+..-++ --..+.+-|-|+|+|..
T Consensus 11 iLl~lvG~i~n~iK~L~RvD~K~fL~nKP~lPPHRDnN~~ 50 (63)
T PF13980_consen 11 ILLILVGMIINGIKELRRVDHKKFLDNKPELPPHRDNNAK 50 (63)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhcCCCCCCCCCccccc
Confidence 677789998887654221 12344455666666543
No 154
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=31.81 E-value=90 Score=24.81 Aligned_cols=17 Identities=12% Similarity=0.182 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021135 238 FATIMTTRQLVSIVLSC 254 (317)
Q Consensus 238 ~si~~~~~~v~aiils~ 254 (317)
.+.+.++-|++..+++.
T Consensus 70 aa~l~Y~lPll~li~g~ 86 (135)
T PF04246_consen 70 AAFLVYLLPLLALIAGA 86 (135)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 155
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=31.20 E-value=4.9e+02 Score=25.11 Aligned_cols=31 Identities=13% Similarity=-0.039 Sum_probs=25.2
Q ss_pred HHHHHhccccchhHHHHHHHHHHhHHHhhcc
Q 021135 92 WGTLIMQKRYKGYDYFLALLVTLGCSIFILF 122 (317)
Q Consensus 92 ~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~ 122 (317)
.-+++.|-++..|-+..+++..+|..++...
T Consensus 79 aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~ 109 (402)
T PF02487_consen 79 APFFIHRVPYWIRILICVALSAAGMLLVAFS 109 (402)
T ss_pred hHhhhhhccchHHHHHHHHHHHHHHhheeec
Confidence 3455667788999999999999999988654
No 156
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=31.00 E-value=43 Score=30.53 Aligned_cols=38 Identities=11% Similarity=0.227 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhcccc
Q 021135 249 SIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKVS 286 (317)
Q Consensus 249 aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k~~~ 286 (317)
+.++++++.|..-+..|+....++.+|+++..+.+.++
T Consensus 105 nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d 142 (330)
T KOG1583|consen 105 NMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKD 142 (330)
T ss_pred HHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcc
Confidence 34899999999999999999999999999888877654
No 157
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=30.44 E-value=74 Score=20.98 Aligned_cols=18 Identities=17% Similarity=-0.068 Sum_probs=10.4
Q ss_pred hHHHhhhhhccccCCCCC
Q 021135 274 GALYTRSFFKKVSEKPRP 291 (317)
Q Consensus 274 ~Gi~~~~~~k~~~~~~~~ 291 (317)
.|+.+-...|++.-+..-
T Consensus 16 Lg~~I~~~~K~ygYkht~ 33 (50)
T PF12606_consen 16 LGLSICTTLKAYGYKHTV 33 (50)
T ss_pred HHHHHHHHhhcccccccc
Confidence 466666666766554333
No 158
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=29.44 E-value=46 Score=30.07 Aligned_cols=25 Identities=8% Similarity=0.066 Sum_probs=20.1
Q ss_pred CchhhhhhhhHhHhHHHhhhhhccc
Q 021135 261 LSWEQCIGSIIVFGALYTRSFFKKV 285 (317)
Q Consensus 261 ~t~~~~~G~~lv~~Gi~~~~~~k~~ 285 (317)
+|..|++++.+++.|+.+..+.+++
T Consensus 237 ls~~Q~isl~~~~~gi~~~~~~~~~ 261 (269)
T PRK00052 237 LTMGQILSIPMILLGIILLIWAYRK 261 (269)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6999999999999998766655443
No 159
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=29.22 E-value=3.6e+02 Score=22.98 Aligned_cols=157 Identities=11% Similarity=0.108 Sum_probs=72.8
Q ss_pred hccccchhHHHHHHHHHHhHHHhhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHccCCCCHHHHHHH
Q 021135 97 MQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFY 176 (317)
Q Consensus 97 ~k~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~~~~~~~~~~~ 176 (317)
+|++-......+++++.+|+..+.... .+. ......+|..+.+.+.+ .+....-.|+++ +.|.++++
T Consensus 15 l~~~w~~~l~~Gv~lii~Gl~~l~~P~----~s~---~~l~~~vG~~lli~Gi~-----~ii~af~~r~~~-~~W~lll~ 81 (185)
T COG3247 15 LKKPWWWVLLLGVLLIILGLLALFNPA----IST---VALVYVVGILLLISGII-----EIISAFGNRSDN-SFWPLLLS 81 (185)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHhHH----HHH---HHHHHHHHHHHHHHHHH-----HHHHHHHhcccc-cchHHHHH
Confidence 466666778899999999998886431 000 01233567766654433 222222122322 44554332
Q ss_pred HHHHHHHHHHHHHHHhCchhHHhHhhhcchHHHHHHHHH-HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHH
Q 021135 177 TTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALL-STVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCV 255 (317)
Q Consensus 177 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~il~l-~~~~~~g~~~~~~~l~~~~a~~~si~~~~~~v~aiils~l 255 (317)
...+.+......+..+ ..+.....++.. .+++.+.+.......+..+. --....--+++++++++
T Consensus 82 -Gil~i~~gil~~~~~~----------~~~~~l~~lia~~~i~~GI~ri~~~~~~~~~~G---~~w~ii~Gvl~ii~g~i 147 (185)
T COG3247 82 -GILSILLGILAGFNPG----------LGALVLTYLIAIWFIASGILRIVVAFRLRSLPG---WWWMIISGVLGIIAGLI 147 (185)
T ss_pred -HHHHHHHHHHHHHhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCC---cHHHHHHHHHHHHHHHH
Confidence 2222222222111110 011111111111 12233333333333333331 12233445678888888
Q ss_pred HhcCCCc----hhhhhhhhHhHhHHHhhh
Q 021135 256 WFRHPLS----WEQCIGSIIVFGALYTRS 280 (317)
Q Consensus 256 ~f~e~~t----~~~~~G~~lv~~Gi~~~~ 280 (317)
+..+|.. ..-++|+-+++.|..+-.
T Consensus 148 ll~~P~~~~~~l~~llGI~li~~G~~~i~ 176 (185)
T COG3247 148 LLFNPVASAWILGLLLGIELIFQGIALIA 176 (185)
T ss_pred HHHccHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777744 344667777887765443
No 160
>MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=28.61 E-value=3.7e+02 Score=22.82 Aligned_cols=24 Identities=17% Similarity=0.094 Sum_probs=19.6
Q ss_pred HHHHHHhcCCCchhhhhhhhHhHh
Q 021135 251 VLSCVWFRHPLSWEQCIGSIIVFG 274 (317)
Q Consensus 251 ils~l~f~e~~t~~~~~G~~lv~~ 274 (317)
.+|..+|.|..-+....|..+.++
T Consensus 133 ~iG~~Lyt~Y~l~fe~~s~lLLvA 156 (186)
T MTH00057 133 VLGRVLYTDYYYLFILASFILLVA 156 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888999999988764
No 161
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=27.86 E-value=5.9e+02 Score=24.98 Aligned_cols=50 Identities=12% Similarity=0.070 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHH
Q 021135 138 TVWGVSLMVGYLGFDGFTSTFQDKLFKG-YDMEIHNQIFYTTLCSCVLSLS 187 (317)
Q Consensus 138 ~~~G~~~~l~a~~~~a~~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 187 (317)
.+..++++.++..+.++...-..+-... -+.+.-.++...|..+++..+.
T Consensus 358 ~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~ 408 (466)
T KOG2532|consen 358 RLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFI 408 (466)
T ss_pred chHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 3566777776666666655443332222 1112334444555555554443
No 162
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase. The conversion of lipoprotein precursors into lipoproteins consists of three steps. First, the enzyme described by this model transfers a diacylglyceryl moiety from phosphatidylglycerol to the side chain of a Cys that will become the new N-terminus. Second, the signal peptide is removed by signal peptidase II. Finally, the free amino group of the new N-terminal Cys is acylated by apolipoprotein N-acyltransferase.
Probab=27.47 E-value=53 Score=29.89 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=19.3
Q ss_pred CchhhhhhhhHhHhHHHhhhhhcc
Q 021135 261 LSWEQCIGSIIVFGALYTRSFFKK 284 (317)
Q Consensus 261 ~t~~~~~G~~lv~~Gi~~~~~~k~ 284 (317)
+|..|++...+++.|+.+..+.++
T Consensus 246 lt~~Q~~sl~~i~~g~~~~~~~~~ 269 (278)
T TIGR00544 246 ISMGQILSLLMIAGILIIMLLAYK 269 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHh
Confidence 799999999999999876655443
No 163
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=25.67 E-value=4.9e+02 Score=23.36 Aligned_cols=95 Identities=13% Similarity=0.170 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHH-HHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHH
Q 021135 16 VLKMIFAVSGIMTTLVIYGILQASRKAIDPVAPVYKYCLVS-MSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGT 94 (317)
Q Consensus 16 ~~~~~~~~~gi~~~~~~~g~~qe~~~~~~~~~~~~~~~~~s-~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~ 94 (317)
..|..-|......+++.. .+++ . -++..+..+| .+.+.++.+.--..+.+-.+..+++-++ ..++.+|
T Consensus 29 ~fQw~~~~~i~~~g~~v~-~~~~----~---p~f~p~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s---~n~l~Gw 97 (254)
T PF07857_consen 29 FFQWVMCSGIFLVGLVVN-LILG----F---PPFYPWAMLGGALWATGNILVVPIIKTIGLGLGMLIWGS---VNCLTGW 97 (254)
T ss_pred HHHHHHHHHHHHHHHHHH-HhcC----C---CcceeHHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHH---HHHHHHH
Confidence 467777765555555543 3321 1 2345555555 5677778888888888888888777766 2334444
Q ss_pred HH-----hc---c--ccchhHHHHHHHHHHhHHHhhc
Q 021135 95 LI-----MQ---K--RYKGYDYFLALLVTLGCSIFIL 121 (317)
Q Consensus 95 l~-----~k---~--~~~~~~~~~~~l~~~Gv~l~~~ 121 (317)
.. ++ + +-++..+++++++++|..++..
T Consensus 98 ~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~f 134 (254)
T PF07857_consen 98 ASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSF 134 (254)
T ss_pred HHhhceeccccccccchhHHHHHHHHHHHHHHHheee
Confidence 43 32 2 2335578999999999998865
No 164
>PF05620 DUF788: Protein of unknown function (DUF788); InterPro: IPR008506 This family consists of several eukaryotic proteins of unknown function.
Probab=25.65 E-value=3e+02 Score=22.90 Aligned_cols=30 Identities=10% Similarity=0.130 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhcCCCchhhhhhhhHhHh
Q 021135 245 RQLVSIVLSCVWFRHPLSWEQCIGSIIVFG 274 (317)
Q Consensus 245 ~~v~aiils~l~f~e~~t~~~~~G~~lv~~ 274 (317)
..++.++.-.+++.+.++++++++.++..+
T Consensus 27 ~~~l~~l~r~~~~~~~~~~~~~~~~~~~~~ 56 (170)
T PF05620_consen 27 VNILYLLLRLLFRYSSPSFWSWFGYLLFSL 56 (170)
T ss_pred HHHHHHHHHHHHHcCcCchHHHHHHHHHHH
Confidence 344555666678889999999998877654
No 165
>PRK14778 lipoprotein signal peptidase; Provisional
Probab=25.25 E-value=89 Score=26.69 Aligned_cols=8 Identities=25% Similarity=0.501 Sum_probs=4.5
Q ss_pred CCCCCCCC
Q 021135 309 GSSPRGGE 316 (317)
Q Consensus 309 ~~~~~~~~ 316 (317)
|.||+|++
T Consensus 172 ~~~~~~~~ 179 (186)
T PRK14778 172 SKSDKRGQ 179 (186)
T ss_pred cccccCCC
Confidence 55666543
No 166
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=24.25 E-value=3.6e+02 Score=21.35 Aligned_cols=15 Identities=13% Similarity=0.326 Sum_probs=8.6
Q ss_pred hhhhhHhHhHHHhhh
Q 021135 266 CIGSIIVFGALYTRS 280 (317)
Q Consensus 266 ~~G~~lv~~Gi~~~~ 280 (317)
..|.+-++.+.....
T Consensus 97 ~~G~~~i~l~~~~~~ 111 (136)
T PF08507_consen 97 LVGVIYIILGFFCPI 111 (136)
T ss_pred HHHHHHHHHHHHcCC
Confidence 456666666665433
No 167
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=23.98 E-value=6.7e+02 Score=24.28 Aligned_cols=64 Identities=9% Similarity=-0.103 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHhhChHHHHHH-------HHHHHHHHHHHHHHHhcCCCchhhhhhhhH--hHhHHHhhh
Q 021135 217 TVATTSQFFISYTIRTFGALTFATI-------MTTRQLVSIVLSCVWFRHPLSWEQCIGSII--VFGALYTRS 280 (317)
Q Consensus 217 ~~~~~g~~~~~~~l~~~~a~~~si~-------~~~~~v~aiils~l~f~e~~t~~~~~G~~l--v~~Gi~~~~ 280 (317)
...++-|-.++......++....-+ +.+.-+..++.-...=+++-+..-..++.. ++..+..+.
T Consensus 129 ~a~a~~qgs~~G~a~~~P~~ytqavm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~~~~llC~i~y~ 201 (406)
T KOG1479|consen 129 LANAVVQGSLYGLAGLFPSEYTQAVMSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITSTVILLLCFVLYL 201 (406)
T ss_pred hhhhhhccchhhhhhcCCHHHHHHHHhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHHHHHHHHHHHHH
Confidence 3344444444444444433333332 333333333333333445555444444444 445555555
No 168
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=22.27 E-value=86 Score=28.61 Aligned_cols=20 Identities=5% Similarity=-0.026 Sum_probs=11.0
Q ss_pred HhHhHHHhhhhhccccCCCC
Q 021135 271 IVFGALYTRSFFKKVSEKPR 290 (317)
Q Consensus 271 lv~~Gi~~~~~~k~~~~~~~ 290 (317)
++++|+++....|+|++..+
T Consensus 244 l~l~Gii~~~~~r~~~~~~~ 263 (281)
T PF12768_consen 244 LVLIGIILAYIRRRRQGYVP 263 (281)
T ss_pred HHHHHHHHHHHHhhhccCcC
Confidence 34467776666666544333
No 169
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=22.05 E-value=9.4e+02 Score=25.34 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=26.1
Q ss_pred HHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHh
Q 021135 79 TLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIF 119 (317)
Q Consensus 79 ~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~ 119 (317)
.++..+.|.-++.+..+...+|.+.+.+.+.+-+++|.+.+
T Consensus 14 ~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 14 VIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred HHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 45666777777777777766665444555665566665543
No 170
>PHA03283 envelope glycoprotein E; Provisional
Probab=21.72 E-value=90 Score=30.94 Aligned_cols=10 Identities=30% Similarity=0.169 Sum_probs=6.6
Q ss_pred cCCCCCCCCC
Q 021135 307 MKGSSPRGGE 316 (317)
Q Consensus 307 ~~~~~~~~~~ 316 (317)
+++|||.|.+
T Consensus 467 f~~~~de~~~ 476 (542)
T PHA03283 467 FDSSSDEELE 476 (542)
T ss_pred cccccccccc
Confidence 6666777655
No 171
>PRK11715 inner membrane protein; Provisional
Probab=21.53 E-value=7.7e+02 Score=24.10 Aligned_cols=57 Identities=12% Similarity=0.192 Sum_probs=34.0
Q ss_pred hccccchhHHHHHHHHHH--hHHHhhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHccC
Q 021135 97 MQKRYKGYDYFLALLVTL--GCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGY 166 (317)
Q Consensus 97 ~k~~~~~~~~~~~~l~~~--Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~l~~~~ 166 (317)
-|+|+++.||+-+.++++ =+.+++.. +...++..+++.|+.|-++.+.+...+.++.
T Consensus 325 ~~~~iHpiQYlLVGlAl~lFYLLLLSlS-------------EHigF~~AYliAa~a~v~li~~Y~~~vl~~~ 383 (436)
T PRK11715 325 KKLRIHPVQYLLVGLALVLFYLLLLSLS-------------EHIGFTLAYLIAALACVLLIGFYLSAVLRSW 383 (436)
T ss_pred cCceecHHHHHHHHHHHHHHHHHHHHHH-------------hhhchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 478999999874433332 22233322 2233566677777777777777776666643
No 172
>KOG3269 consensus Predicted membrane protein [Function unknown]
Probab=21.36 E-value=2.2e+02 Score=24.09 Aligned_cols=37 Identities=11% Similarity=0.076 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCCCchhhhhhhhHhHh--HHHhhhhhcc
Q 021135 248 VSIVLSCVWFRHPLSWEQCIGSIIVFG--ALYTRSFFKK 284 (317)
Q Consensus 248 ~aiils~l~f~e~~t~~~~~G~~lv~~--Gi~~~~~~k~ 284 (317)
+...+..++|....|+.+|++.++... |..++.+...
T Consensus 36 ~~~~v~~~f~~s~~T~~~wi~lv~s~l~~g~~y~~m~~m 74 (180)
T KOG3269|consen 36 VYFAVLRLFFYSSVTKTSWIGLVFSSLVYGFAYYFMHSM 74 (180)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555567778899999999888664 5555554443
No 173
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=21.18 E-value=8.3e+02 Score=24.34 Aligned_cols=26 Identities=8% Similarity=-0.055 Sum_probs=15.1
Q ss_pred HhhChHHHHHHHHHHHHHHHHHHHHH
Q 021135 231 RTFGALTFATIMTTRQLVSIVLSCVW 256 (317)
Q Consensus 231 ~~~~a~~~si~~~~~~v~aiils~l~ 256 (317)
.+.-+....+..-..|+-+.+.+.+.
T Consensus 342 GRv~si~~~~~~g~~~lGsll~G~la 367 (524)
T PF05977_consen 342 GRVFSIYQMVFFGGMPLGSLLWGFLA 367 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555666677777654
No 174
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=21.16 E-value=84 Score=18.18 Aligned_cols=15 Identities=13% Similarity=-0.084 Sum_probs=8.1
Q ss_pred CCchhhhhhhhHhHh
Q 021135 260 PLSWEQCIGSIIVFG 274 (317)
Q Consensus 260 ~~t~~~~~G~~lv~~ 274 (317)
.-++..++|++++.+
T Consensus 9 ~~~~~~~~G~~l~~~ 23 (34)
T TIGR01167 9 GNSLLLLLGLLLLGL 23 (34)
T ss_pred ccHHHHHHHHHHHHH
Confidence 344556777744444
No 175
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=20.81 E-value=1.5e+02 Score=20.93 Aligned_cols=7 Identities=71% Similarity=0.909 Sum_probs=2.7
Q ss_pred hhhhHhH
Q 021135 267 IGSIIVF 273 (317)
Q Consensus 267 ~G~~lv~ 273 (317)
+|+.+|+
T Consensus 10 ~Gm~iVF 16 (79)
T PF04277_consen 10 IGMGIVF 16 (79)
T ss_pred HHHHHHH
Confidence 3333333
No 176
>PF15471 TMEM171: Transmembrane protein family 171
Probab=20.76 E-value=1.1e+02 Score=27.71 Aligned_cols=25 Identities=20% Similarity=0.062 Sum_probs=18.8
Q ss_pred chhhhhhhhHhHhHHHhhhhhcccc
Q 021135 262 SWEQCIGSIIVFGALYTRSFFKKVS 286 (317)
Q Consensus 262 t~~~~~G~~lv~~Gi~~~~~~k~~~ 286 (317)
-..|++|-++++.|+.+.....-||
T Consensus 160 LslQImGPlIVl~GLCFFVVAHvKK 184 (319)
T PF15471_consen 160 LSLQIMGPLIVLVGLCFFVVAHVKK 184 (319)
T ss_pred eehhhhhhHHHHHhhhhhheeeeee
Confidence 3578999999999987776654333
No 177
>PF15201 Rod_cone_degen: Progressive rod-cone degeneration
Probab=20.13 E-value=2.1e+02 Score=18.57 Aligned_cols=8 Identities=63% Similarity=0.700 Sum_probs=3.6
Q ss_pred CCCCCCCC
Q 021135 310 SSPRGGEP 317 (317)
Q Consensus 310 ~~~~~~~~ 317 (317)
+|.||.+|
T Consensus 45 ssgre~~p 52 (54)
T PF15201_consen 45 SSGREKEP 52 (54)
T ss_pred cCCcccCC
Confidence 34445444
Done!