Query 021138
Match_columns 317
No_of_seqs 221 out of 415
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 13:17:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021138.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021138hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wgf_A Upstream binding factor 99.9 3.6E-23 1.2E-27 161.1 8.0 76 22-98 11-86 (90)
2 1cg7_A Protein (NON histone pr 99.9 5.6E-23 1.9E-27 160.9 2.3 85 11-97 1-85 (93)
3 2eqz_A High mobility group pro 99.9 1.8E-22 6.1E-27 155.7 3.8 75 23-97 7-82 (86)
4 2lhj_A High mobility group pro 99.8 1.2E-22 4.1E-27 160.2 2.1 86 11-97 1-89 (97)
5 1k99_A Upstream binding factor 99.8 9.4E-23 3.2E-27 161.5 1.2 73 24-97 3-75 (99)
6 2d7l_A WD repeat and HMG-box D 99.8 3.8E-21 1.3E-25 146.8 8.1 67 27-94 1-68 (81)
7 2co9_A Thymus high mobility gr 99.8 1.9E-21 6.7E-26 154.7 6.6 75 22-97 8-82 (102)
8 1aab_A High mobility group pro 99.8 5.8E-22 2E-26 151.7 2.6 73 26-98 2-75 (83)
9 2yuk_A Myeloid/lymphoid or mix 99.8 7.8E-23 2.7E-27 158.6 -2.4 80 13-97 4-85 (90)
10 1hme_A High mobility group pro 99.8 2.6E-21 8.8E-26 145.9 4.6 71 26-97 1-71 (77)
11 2e6o_A HMG box-containing prot 99.8 1E-20 3.5E-25 146.2 5.9 73 24-97 10-82 (87)
12 1l8y_A Upstream binding factor 99.8 3.9E-21 1.3E-25 149.1 3.0 67 29-97 2-68 (91)
13 2crj_A SWI/SNF-related matrix- 99.8 1.1E-20 3.9E-25 147.4 5.6 71 26-97 2-72 (92)
14 2cs1_A PMS1 protein homolog 1; 99.8 6.5E-21 2.2E-25 148.8 4.0 71 26-97 2-72 (92)
15 1hry_A Human SRY; DNA, DNA-bin 99.8 1.4E-20 4.9E-25 141.4 5.1 69 28-97 1-69 (76)
16 1wz6_A HMG-box transcription f 99.8 2.9E-20 9.9E-25 141.9 6.3 72 26-98 2-73 (82)
17 1wxl_A Single-strand recogniti 99.8 3.9E-20 1.3E-24 138.2 4.6 67 29-98 1-67 (73)
18 2cto_A Novel protein; high mob 99.8 3.8E-20 1.3E-24 144.6 3.4 76 26-104 5-83 (93)
19 1j46_A SRY, sex-determining re 99.8 1.5E-19 5E-24 139.0 5.9 70 28-98 1-70 (85)
20 1ckt_A High mobility group 1 p 99.8 4.9E-20 1.7E-24 136.7 2.5 67 31-97 1-68 (71)
21 4euw_A Transcription factor SO 99.8 1.5E-19 5.2E-24 144.7 4.4 76 22-98 20-95 (106)
22 2gzk_A Sex-determining region 99.8 4.7E-19 1.6E-23 151.3 7.3 85 11-97 69-153 (159)
23 3nm9_A HMG-D, high mobility gr 99.8 3.4E-19 1.2E-23 133.1 4.0 66 29-97 1-66 (73)
24 1gt0_D Transcription factor SO 99.7 4.7E-19 1.6E-23 134.5 4.1 68 30-98 1-68 (80)
25 1i11_A Transcription factor SO 99.7 6.1E-19 2.1E-23 134.2 4.6 69 29-98 2-70 (81)
26 4a3n_A Transcription factor SO 99.7 5.4E-19 1.8E-23 130.8 4.0 68 30-98 1-68 (71)
27 3f27_D Transcription factor SO 99.7 4.9E-19 1.7E-23 135.2 3.2 71 27-98 2-72 (83)
28 3fgh_A Transcription factor A, 99.7 3E-19 1E-23 131.1 1.2 63 30-97 1-63 (67)
29 1v64_A Nucleolar transcription 99.7 5.4E-19 1.8E-23 142.0 2.6 69 24-97 9-78 (108)
30 2yrq_A High mobility group pro 99.7 4.6E-18 1.6E-22 147.2 6.8 73 24-97 8-82 (173)
31 2lef_A LEF-1 HMG, protein (lym 99.7 6.6E-18 2.2E-22 130.0 5.3 66 31-97 2-67 (86)
32 2yrq_A High mobility group pro 99.7 4.6E-18 1.6E-22 147.2 5.0 74 23-97 93-166 (173)
33 3u2b_C Transcription factor SO 99.7 7.6E-18 2.6E-22 127.3 4.6 68 30-98 1-68 (79)
34 1v63_A Nucleolar transcription 99.7 1.5E-17 5.1E-22 132.0 3.2 69 26-97 3-71 (101)
35 3tmm_A Transcription factor A, 99.7 6.2E-18 2.1E-22 153.7 0.4 75 22-97 32-106 (238)
36 3tq6_A Transcription factor A, 99.6 2E-16 7E-21 141.5 3.5 69 28-97 6-74 (214)
37 3tq6_A Transcription factor A, 99.6 1.3E-17 4.5E-22 149.2 -4.8 70 23-97 106-175 (214)
38 3tmm_A Transcription factor A, 99.6 2.6E-17 8.9E-22 149.6 -5.6 70 23-97 138-207 (238)
39 2gzk_A Sex-determining region 99.5 5.2E-15 1.8E-19 126.1 3.7 68 29-97 2-69 (159)
40 2qgu_A Probable signal peptide 56.7 9.4 0.00032 33.0 4.0 39 47-85 61-100 (211)
41 1qfq_B N36, 36-MER N-terminal 22.9 48 0.0016 19.7 1.9 9 2-10 1-9 (35)
42 1vej_A Riken cDNA 4931431F19; 20.9 78 0.0027 22.7 3.1 39 123-161 30-73 (74)
No 1
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.88 E-value=3.6e-23 Score=161.07 Aligned_cols=76 Identities=20% Similarity=0.374 Sum_probs=73.1
Q ss_pred hhhcCCCCCCCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCCC
Q 021138 22 ILRANGQDAVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNSH 98 (317)
Q Consensus 22 ~~~~~~~~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k~ 98 (317)
+.|+++|||+||||+||||+|++++|.+++++||++++ .+|+|.+|+.|++||++||++|+++|++++.+|..++.
T Consensus 11 ~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~-~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 86 (90)
T 1wgf_A 11 QEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSE-SELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSG 86 (90)
T ss_dssp SCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCH-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred cCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55778999999999999999999999999999999999 99999999999999999999999999999999999875
No 2
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.86 E-value=5.6e-23 Score=160.89 Aligned_cols=85 Identities=22% Similarity=0.333 Sum_probs=76.8
Q ss_pred CCCCccccCcchhhcCCCCCCCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhc
Q 021138 11 QPGGLQKKGAPILRANGQDAVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMG 90 (317)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~ 90 (317)
|.+.+..+++ +.|+.+|||+||||+||||+|++++|.+++++||++++ ++|+|++|+.|++||++||++|.++|++++
T Consensus 1 ~~~~~~~k~~-~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~-~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k 78 (93)
T 1cg7_A 1 MVTPREPKKR-TTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITF-GQVGKKLGEKWKALTPEEKQPYEAKAQADK 78 (93)
T ss_dssp CCCCCCCCCC-CCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCH-HHHTTTHHHHHHTTHHHHHHHHHHHHTTHH
T ss_pred CCCCCCCCcc-cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4455555554 56778999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred cCCCCCC
Q 021138 91 NSGNSNS 97 (317)
Q Consensus 91 ~~y~~~k 97 (317)
.+|..++
T Consensus 79 ~~y~~e~ 85 (93)
T 1cg7_A 79 KRYESEK 85 (93)
T ss_dssp HHTTHHH
T ss_pred HHHHHHH
Confidence 9998764
No 3
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.8e-22 Score=155.71 Aligned_cols=75 Identities=11% Similarity=0.198 Sum_probs=69.8
Q ss_pred hhcCCCCCCCCCCchhhHHHHHHHHHHHHhhCCCCch-hhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCC
Q 021138 23 LRANGQDAVPTSSTYGFVSYFNEEVKRLRSENSDLSV-TLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 97 (317)
Q Consensus 23 ~~~~~~~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~-~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k 97 (317)
.++++|||+||||+||||+|++++|.+++++||+.+. ..+|+|.+|++|++||++||++|+++|++++.+|..++
T Consensus 7 ~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~ 82 (86)
T 2eqz_A 7 GMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREM 82 (86)
T ss_dssp SCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999973 38999999999999999999999999999999998664
No 4
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.85 E-value=1.2e-22 Score=160.18 Aligned_cols=86 Identities=17% Similarity=0.321 Sum_probs=76.8
Q ss_pred CCCCccccCcc-hhhcCCCCCCCCCCchhhHHHHHHHHHHHHhhCCCCc--hhhhhhhHHhhhhcCCChHHhhhhhhhhh
Q 021138 11 QPGGLQKKGAP-ILRANGQDAVPTSSTYGFVSYFNEEVKRLRSENSDLS--VTLGLRKHIGKTYKELPPEQKARYKKRDE 87 (317)
Q Consensus 11 ~~~~~~~~~~~-~~~~~~~~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~--~~~~~~k~~g~~wk~l~~~ek~~y~~~a~ 87 (317)
|||+..++.++ +.++.+|||+||||+||||+|++++|.+++++||+++ + ++|+|++|+.|++||++||++|+++|+
T Consensus 1 ~~~~~~~~~k~~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~-~eisk~lg~~Wk~ls~eeK~~Y~~~A~ 79 (97)
T 2lhj_A 1 MAGASDRTGVRRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDV-AAIGKMIGAAWNALSDEEKKPYERMSD 79 (97)
T ss_dssp CCCCSSSSSCCCTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCS-SHHHHHHHHTSSSSCSTTTSSSSHHHH
T ss_pred CCCccccccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccH-HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 56554444444 6677899999999999999999999999999999998 7 999999999999999999999999999
Q ss_pred hhccCCCCCC
Q 021138 88 RMGNSGNSNS 97 (317)
Q Consensus 88 ~~~~~y~~~k 97 (317)
+++.+|..++
T Consensus 80 ~~k~~y~~e~ 89 (97)
T 2lhj_A 80 EDRVRYEREK 89 (97)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998664
No 5
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.85 E-value=9.4e-23 Score=161.48 Aligned_cols=73 Identities=23% Similarity=0.373 Sum_probs=69.6
Q ss_pred hcCCCCCCCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCC
Q 021138 24 RANGQDAVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 97 (317)
Q Consensus 24 ~~~~~~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k 97 (317)
|+++|||+||||+||||+|++++|.+++++||++++ ++|+|++|+.|++||++||++|+++|++++.+|..++
T Consensus 3 kk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~-~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~ 75 (99)
T 1k99_A 3 KLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSN-LDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNL 75 (99)
T ss_dssp CCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCS-HHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999998 9999999999999999999999999999999977665
No 6
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.8e-21 Score=146.75 Aligned_cols=67 Identities=18% Similarity=0.280 Sum_probs=63.4
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHhhCCCCc-hhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCC
Q 021138 27 GQDAVPTSSTYGFVSYFNEEVKRLRSENSDLS-VTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGN 94 (317)
Q Consensus 27 ~~~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~-~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~ 94 (317)
++||+||||+||||+|++++|.+++++||+++ + ++|+|.+|++|++||++||+||+++|+.+..+-.
T Consensus 1 ~~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~-~eisK~lge~Wk~ls~eeK~~y~~~A~~d~~~~~ 68 (81)
T 2d7l_A 1 GSSGSSGRPKTGFQMWLEENRSNILSDNPDFSDE-ADIIKEGMIRFRVLSTEERKVWANKAKGETASEG 68 (81)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSH-HHHHHHHHHHHSSSCHHHHHHHHHHTTSSSSSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 58999999999999999999999999999998 7 9999999999999999999999999999976543
No 7
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=1.9e-21 Score=154.66 Aligned_cols=75 Identities=16% Similarity=0.254 Sum_probs=71.1
Q ss_pred hhhcCCCCCCCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCC
Q 021138 22 ILRANGQDAVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 97 (317)
Q Consensus 22 ~~~~~~~~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k 97 (317)
+.|+.+|||+||||+||||+|++++|.+++++||++++ .+|+|++|++|++||++||++|+++|++++.+|..++
T Consensus 8 ~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~-~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~ 82 (102)
T 2co9_A 8 KKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATF-GEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQL 82 (102)
T ss_dssp SCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44668999999999999999999999999999999998 9999999999999999999999999999999998765
No 8
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.83 E-value=5.8e-22 Score=151.74 Aligned_cols=73 Identities=11% Similarity=0.232 Sum_probs=69.1
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHHHhhCCCCch-hhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCCC
Q 021138 26 NGQDAVPTSSTYGFVSYFNEEVKRLRSENSDLSV-TLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNSH 98 (317)
Q Consensus 26 ~~~~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~-~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k~ 98 (317)
++|||+||||+||||+|++++|.+++++||+.+. +++|+|.+|++|++||++||++|+++|++++.+|..++.
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~ 75 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMK 75 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999873 389999999999999999999999999999999998874
No 9
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.83 E-value=7.8e-23 Score=158.62 Aligned_cols=80 Identities=19% Similarity=0.241 Sum_probs=71.4
Q ss_pred CCccccCcchhhcCCCCCCCCCCchhhHHHHHHHHHHHHhhCCCCc--hhhhhhhHHhhhhcCCChHHhhhhhhhhhhhc
Q 021138 13 GGLQKKGAPILRANGQDAVPTSSTYGFVSYFNEEVKRLRSENSDLS--VTLGLRKHIGKTYKELPPEQKARYKKRDERMG 90 (317)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~--~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~ 90 (317)
|+.+...+...|+++|||+||||+||||+|++++|..++++||+++ + ++|+ ++|+.|+++||+||+++|++++
T Consensus 4 ~~~~~~~~~~~k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~-~eIs----e~Wk~ls~eeK~pY~~kA~~~K 78 (90)
T 2yuk_A 4 GSSGNAQRSTLKWEKEEALGEMATVAPVLYTNINFPNLKEEFPDWTTRV-KQIA----KLWRKASSQERAPYVQKARDNR 78 (90)
T ss_dssp SSCCCCCCCHHHHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHH-HHHH----HHHHHSCHHHHHHHHHHHHHHH
T ss_pred CCccccHHHHhhccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCccchH-HHHH----HHHHcCCHHHHHHHHHHHHHHH
Confidence 3344444446788999999999999999999999999999999998 7 8888 9999999999999999999999
Q ss_pred cCCCCCC
Q 021138 91 NSGNSNS 97 (317)
Q Consensus 91 ~~y~~~k 97 (317)
++|..++
T Consensus 79 ~~h~~~~ 85 (90)
T 2yuk_A 79 AALRINK 85 (90)
T ss_dssp HHHHHSS
T ss_pred HHHHhhH
Confidence 9998765
No 10
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.83 E-value=2.6e-21 Score=145.92 Aligned_cols=71 Identities=15% Similarity=0.344 Sum_probs=68.5
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCC
Q 021138 26 NGQDAVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 97 (317)
Q Consensus 26 ~~~~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k 97 (317)
++|||+||||+||||+|++++|.+++++||++++ ++|+|.+|+.|++||++||++|.++|++++.+|..++
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~-~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~ 71 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI-GDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDI 71 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCH-HHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999998 9999999999999999999999999999999998765
No 11
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=1e-20 Score=146.20 Aligned_cols=73 Identities=7% Similarity=0.094 Sum_probs=69.1
Q ss_pred hcCCCCCCCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCC
Q 021138 24 RANGQDAVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 97 (317)
Q Consensus 24 ~~~~~~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k 97 (317)
++.+|||+||||+||||+|++++|.+++++||++++ .+|+|++|+.|++||++||++|+++|++++.+|..+.
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~-~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~ 82 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDN-RAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLN 82 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCH-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 457899999999999999999999999999999998 9999999999999999999999999999999987543
No 12
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.81 E-value=3.9e-21 Score=149.06 Aligned_cols=67 Identities=9% Similarity=0.078 Sum_probs=64.4
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCC
Q 021138 29 DAVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 97 (317)
Q Consensus 29 ~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k 97 (317)
.|.||||+||||+|++++|.+++++||+ .+ ++|+|.+|++|++||++||+||+++|++++.+|+.++
T Consensus 2 ~~kPKrP~SAy~lf~~~~r~~~k~~~p~-~~-~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm 68 (91)
T 1l8y_A 2 GKLPESPKRAEEIWQQSVIGDYLARFKN-DR-VKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYEREL 68 (91)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHHTTS-TH-HHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHcCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999999999999 66 9999999999999999999999999999999999887
No 13
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.81 E-value=1.1e-20 Score=147.40 Aligned_cols=71 Identities=23% Similarity=0.449 Sum_probs=68.5
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCC
Q 021138 26 NGQDAVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 97 (317)
Q Consensus 26 ~~~~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k 97 (317)
.+|||+||||+||||+|++++|.+++++||++++ .+|+|++|+.|++||++||++|.++|++++.+|..++
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~-~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~ 72 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDLPF-PEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKEL 72 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCH-HHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999998 9999999999999999999999999999999998765
No 14
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=6.5e-21 Score=148.77 Aligned_cols=71 Identities=15% Similarity=0.170 Sum_probs=68.4
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCC
Q 021138 26 NGQDAVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 97 (317)
Q Consensus 26 ~~~~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k 97 (317)
..+||+||||+||||+|++++|.+++++||++++ .+|+|++|++|++||++||++|.++|++++.+|..++
T Consensus 2 ~~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~-~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~ 72 (92)
T 2cs1_A 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPKTSL-EDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQM 72 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCH-HHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999998 8999999999999999999999999999999999776
No 15
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.81 E-value=1.4e-20 Score=141.43 Aligned_cols=69 Identities=12% Similarity=0.230 Sum_probs=65.1
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCC
Q 021138 28 QDAVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 97 (317)
Q Consensus 28 ~~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k 97 (317)
|||+||||+||||+|++++|.+++++||++++ ++|+|++|+.|++||++||++|.++|++++.+|..+.
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~~~-~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~ 69 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRN-SEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKY 69 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCCSS-SHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCCCH-HHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 79999999999999999999999999999998 8999999999999999999999999999999998765
No 16
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.80 E-value=2.9e-20 Score=141.92 Aligned_cols=72 Identities=14% Similarity=0.222 Sum_probs=69.3
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCCC
Q 021138 26 NGQDAVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNSH 98 (317)
Q Consensus 26 ~~~~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k~ 98 (317)
..||++||||+||||+|++++|.+++++||++++ .+|+|++|+.|++||++||++|.++|++++.+|..+..
T Consensus 2 ~~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~-~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~ 73 (82)
T 1wz6_A 2 SSGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDN-RGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANP 73 (82)
T ss_dssp CSSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCT-THHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4689999999999999999999999999999999 99999999999999999999999999999999998874
No 17
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.79 E-value=3.9e-20 Score=138.17 Aligned_cols=67 Identities=19% Similarity=0.404 Sum_probs=65.1
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCCC
Q 021138 29 DAVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNSH 98 (317)
Q Consensus 29 ~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k~ 98 (317)
||+||||+||||+|++++|.+++++||++++ ++|+|.+|+.|++| +||++|+++|++++.+|..++.
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~-~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~ 67 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKV-TEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMR 67 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCH-HHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTG
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999998 99999999999999 8999999999999999998874
No 18
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3.8e-20 Score=144.61 Aligned_cols=76 Identities=14% Similarity=0.252 Sum_probs=69.8
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHH---hhhhcCCChHHhhhhhhhhhhhccCCCCCCCCCCC
Q 021138 26 NGQDAVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHI---GKTYKELPPEQKARYKKRDERMGNSGNSNSHSGDN 102 (317)
Q Consensus 26 ~~~~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~---g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k~~~k~ 102 (317)
.+++|+||||+||||+|++++|.+++.+ ++++ ++|+|.+ |++|+.||++||+||+++|++++.+|+++.++..+
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~~~-~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~~~~~~ 81 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRR--GLPV-ARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDPGPSEK 81 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHH--TCCC-SSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSSCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHc--CCCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 6799999999999999999999999999 7877 8999999 99999999999999999999999999998865444
Q ss_pred Cc
Q 021138 103 EI 104 (317)
Q Consensus 103 ~~ 104 (317)
.+
T Consensus 82 ~~ 83 (93)
T 2cto_A 82 QK 83 (93)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 19
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.78 E-value=1.5e-19 Score=139.01 Aligned_cols=70 Identities=11% Similarity=0.224 Sum_probs=67.2
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCCC
Q 021138 28 QDAVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNSH 98 (317)
Q Consensus 28 ~~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k~ 98 (317)
.||+||||+||||+|++++|.+++++||++++ ++|+|++|+.|++||++||++|.++|++++.+|..+..
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~-~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~ 70 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRMRN-SEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYP 70 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTSCH-HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCc
Confidence 48999999999999999999999999999998 99999999999999999999999999999999987763
No 20
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.77 E-value=4.9e-20 Score=136.65 Aligned_cols=67 Identities=10% Similarity=0.198 Sum_probs=63.1
Q ss_pred CCCCCchhhHHHHHHHHHHHHhhCCCCch-hhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCC
Q 021138 31 VPTSSTYGFVSYFNEEVKRLRSENSDLSV-TLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 97 (317)
Q Consensus 31 ~pkr~~~~~~~f~~~~r~~~~~~~p~~~~-~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k 97 (317)
+||||+||||+|++++|.+++++||+.+. +++|+|.+|++|++||++||++|.++|++++.+|..++
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~ 68 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREM 68 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999863 48999999999999999999999999999999998665
No 21
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.77 E-value=1.5e-19 Score=144.70 Aligned_cols=76 Identities=14% Similarity=0.263 Sum_probs=66.0
Q ss_pred hhhcCCCCCCCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCCC
Q 021138 22 ILRANGQDAVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNSH 98 (317)
Q Consensus 22 ~~~~~~~~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k~ 98 (317)
.....+||++||||+||||+|++++|.+++++||++++ .+|+|++|+.|++||++||++|.++|++++.+|..+..
T Consensus 20 ~~~~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~-~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 95 (106)
T 4euw_A 20 YFQSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHP 95 (106)
T ss_dssp --------CCCCCCCCHHHHHHHHHHHHHHHHCTTSCH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hhhccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34557899999999999999999999999999999999 89999999999999999999999999999999997763
No 22
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.76 E-value=4.7e-19 Score=151.31 Aligned_cols=85 Identities=16% Similarity=0.329 Sum_probs=75.0
Q ss_pred CCCCccccCcchhhcCCCCCCCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhc
Q 021138 11 QPGGLQKKGAPILRANGQDAVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMG 90 (317)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~ 90 (317)
|+.-...+++ +.++.+|||+||||+||||+|++++|..++++||++++ ++|+|.+|+.|++||++||++|.++|++++
T Consensus 69 ~~~y~~~k~~-~kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~-~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k 146 (159)
T 2gzk_A 69 YPNYKYRKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI-GDVAKKLGEMWNNTAADDKQPYEKKAAKLK 146 (159)
T ss_dssp CSSCSCCCCC-CGGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCH-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred hhcccccccc-ccccccccccccccccccchhhHhhHHHHHHhCCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4433333333 45678999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred cCCCCCC
Q 021138 91 NSGNSNS 97 (317)
Q Consensus 91 ~~y~~~k 97 (317)
.+|..++
T Consensus 147 ~~y~~~~ 153 (159)
T 2gzk_A 147 EKYEKDI 153 (159)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998664
No 23
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.75 E-value=3.4e-19 Score=133.06 Aligned_cols=66 Identities=12% Similarity=0.309 Sum_probs=63.1
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCC
Q 021138 29 DAVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 97 (317)
Q Consensus 29 ~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k 97 (317)
.|+||||+||||+|++++|.+++++||++++ ++|+|.+|+.|++||+ |++|+++|++++.+|..++
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~~~~-~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~ 66 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPGIKV-TEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAV 66 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSSCCH-HHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999998 9999999999999998 9999999999999998664
No 24
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.75 E-value=4.7e-19 Score=134.49 Aligned_cols=68 Identities=13% Similarity=0.239 Sum_probs=65.4
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCCC
Q 021138 30 AVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNSH 98 (317)
Q Consensus 30 ~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k~ 98 (317)
+.||||+||||+|++++|.+++++||++++ ++|+|++|+.|++||++||++|.++|++++.+|..+..
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~~-~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~ 68 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHP 68 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCH-HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCc
Confidence 579999999999999999999999999998 99999999999999999999999999999999998773
No 25
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.75 E-value=6.1e-19 Score=134.20 Aligned_cols=69 Identities=13% Similarity=0.245 Sum_probs=65.5
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCCC
Q 021138 29 DAVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNSH 98 (317)
Q Consensus 29 ~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k~ 98 (317)
+++||||+||||+|++++|..++++||++++ ++|+|++|+.|++||++||++|.++|++++.+|..+..
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~~-~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p 70 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYP 70 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCCH-HHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCS
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 6899999999999999999999999999998 99999999999999999999999999999999987763
No 26
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.74 E-value=5.4e-19 Score=130.84 Aligned_cols=68 Identities=25% Similarity=0.365 Sum_probs=61.8
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCCC
Q 021138 30 AVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNSH 98 (317)
Q Consensus 30 ~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k~ 98 (317)
+.||||+||||+|++++|.+++++||++++ ++|+|.+|+.|++||++||++|.++|++++.+|..+..
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~~~-~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~ 68 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDLHN-AELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHP 68 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTSCH-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCc
Confidence 469999999999999999999999999998 99999999999999999999999999999999987753
No 27
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.74 E-value=4.9e-19 Score=135.23 Aligned_cols=71 Identities=24% Similarity=0.338 Sum_probs=63.9
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCCC
Q 021138 27 GQDAVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNSH 98 (317)
Q Consensus 27 ~~~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k~ 98 (317)
..++.||||+||||+|++++|..++++||++++ ++|+|++|+.|++||++||++|.++|++++.+|..+..
T Consensus 2 ~~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~-~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~ 72 (83)
T 3f27_D 2 SFTSRIRRPMNAFMVWAKDERKRLAQQNPDLHN-AELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHP 72 (83)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHHHHCSSSCH-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 357899999999999999999999999999998 99999999999999999999999999999999987763
No 28
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.73 E-value=3e-19 Score=131.08 Aligned_cols=63 Identities=13% Similarity=0.237 Sum_probs=59.8
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCC
Q 021138 30 AVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 97 (317)
Q Consensus 30 ~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k 97 (317)
|+||||+||||+|++++|.+++.+|| ++|+|.+|+.|++||++||++|.++|++++.+|..++
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~ 63 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEM 63 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999987 5899999999999999999999999999999998664
No 29
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.73 E-value=5.4e-19 Score=141.98 Aligned_cols=69 Identities=14% Similarity=0.210 Sum_probs=65.0
Q ss_pred hcCCCCCCC-CCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCC
Q 021138 24 RANGQDAVP-TSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 97 (317)
Q Consensus 24 ~~~~~~~~p-kr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k 97 (317)
++.+|||+| |||+||||+|++++|.+++ ++++ ++|+|.+|++|++||++||++|+++|++++.+|..++
T Consensus 9 kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~~~-~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~ 78 (108)
T 1v64_A 9 LKDKFDGRPTKPPPNSYSLYCAELMANMK----DVPS-TERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVEL 78 (108)
T ss_dssp SSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TSCH-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHh----CCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999 9999999999999999988 7888 9999999999999999999999999999999999775
No 30
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4.6e-18 Score=147.21 Aligned_cols=73 Identities=8% Similarity=0.199 Sum_probs=69.0
Q ss_pred hcCCCCCCCCCCchhhHHHHHHHHHHHHhhCCCC--chhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCC
Q 021138 24 RANGQDAVPTSSTYGFVSYFNEEVKRLRSENSDL--SVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 97 (317)
Q Consensus 24 ~~~~~~~~pkr~~~~~~~f~~~~r~~~~~~~p~~--~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k 97 (317)
++++|||+||||+||||+|++++|.+++++||+. ++ ++|+|.+|++|++||++||++|.++|++++.+|..++
T Consensus 8 ~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~-~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~ 82 (173)
T 2yrq_A 8 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNF-SEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREM 82 (173)
T ss_dssp SSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCH-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999994 66 9999999999999999999999999999999998765
No 31
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.71 E-value=6.6e-18 Score=129.96 Aligned_cols=66 Identities=14% Similarity=0.196 Sum_probs=63.7
Q ss_pred CCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCC
Q 021138 31 VPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 97 (317)
Q Consensus 31 ~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k 97 (317)
.||||+||||+|++++|.+++++||++++ ++|+|++|+.|++||++||++|.++|++++.+|..+.
T Consensus 2 ~pKRP~naf~lf~~~~r~~~~~~~P~~~~-~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~ 67 (86)
T 2lef_A 2 HIKKPLNAFMLYMKEMRANVVAESTLKES-AAINQILGRRWHALSREEQAKYYELARKERQLHMQLY 67 (86)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHSSCCCH-HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 59999999999999999999999999998 9999999999999999999999999999999998765
No 32
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.6e-18 Score=147.16 Aligned_cols=74 Identities=15% Similarity=0.331 Sum_probs=70.0
Q ss_pred hhcCCCCCCCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCC
Q 021138 23 LRANGQDAVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 97 (317)
Q Consensus 23 ~~~~~~~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k 97 (317)
.|+.+|||+||||+||||+|+++.|.+++++||++++ .+|+|.+|+.|++||++||++|.++|++++.+|..++
T Consensus 93 kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~-~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~ 166 (173)
T 2yrq_A 93 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI-GDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDI 166 (173)
T ss_dssp SCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCH-HHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCccccCcccHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557899999999999999999999999999999999 9999999999999999999999999999999998664
No 33
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.70 E-value=7.6e-18 Score=127.33 Aligned_cols=68 Identities=16% Similarity=0.262 Sum_probs=64.8
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCCC
Q 021138 30 AVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNSH 98 (317)
Q Consensus 30 ~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k~ 98 (317)
+.||||+||||+|+++.|.+++++||++++ ++|+|++|+.|++||++||++|.++|++++.+|..+..
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~~-~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p 68 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMHN-AEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYP 68 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCH-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 469999999999999999999999999998 89999999999999999999999999999999987763
No 34
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.67 E-value=1.5e-17 Score=131.99 Aligned_cols=69 Identities=19% Similarity=0.278 Sum_probs=61.0
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCC
Q 021138 26 NGQDAVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 97 (317)
Q Consensus 26 ~~~~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k 97 (317)
.+..++||||+||||+|+++++. ..++|++++ ++|+|.+|++|+.||++||+||+++|++++.+|..++
T Consensus 3 s~~~~~PKrP~say~lF~~e~~~--~p~~~~~~~-~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~ 71 (101)
T 1v63_A 3 SGSSGPKKPPMNGYQKFSQELLS--NGELNHLPL-KERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHL 71 (101)
T ss_dssp CCCCSSCCCCSSSHHHHHHHHHH--HCTTTTSCH-HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHh--CCCCCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999975 334555777 8999999999999999999999999999999999775
No 35
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.66 E-value=6.2e-18 Score=153.72 Aligned_cols=75 Identities=15% Similarity=0.245 Sum_probs=69.4
Q ss_pred hhhcCCCCCCCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCC
Q 021138 22 ILRANGQDAVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 97 (317)
Q Consensus 22 ~~~~~~~~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k 97 (317)
+....+|||+||||+||||+|+++.|.+++++||++++ ++|+|.+|++|+.||++||++|+++|++++.+|+.++
T Consensus 32 ~~~s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~-~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~ 106 (238)
T 3tmm_A 32 RGSSSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKT-TELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEI 106 (238)
T ss_dssp ---CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCH-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446799999999999999999999999999999998 9999999999999999999999999999999999775
No 36
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.60 E-value=2e-16 Score=141.51 Aligned_cols=69 Identities=16% Similarity=0.306 Sum_probs=66.8
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCC
Q 021138 28 QDAVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 97 (317)
Q Consensus 28 ~~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k 97 (317)
+||+||||+||||+|+++.|.+++++||++++ ++|+|.+|++|++||++||++|+++|++++.+|+.++
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~~~~-~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~ 74 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPDAKT-TELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEI 74 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTTSCH-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999998 9999999999999999999999999999999999765
No 37
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.60 E-value=1.3e-17 Score=149.24 Aligned_cols=70 Identities=11% Similarity=0.182 Sum_probs=65.2
Q ss_pred hhcCCCCCCCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCC
Q 021138 23 LRANGQDAVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 97 (317)
Q Consensus 23 ~~~~~~~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k 97 (317)
.|..+|||+||||+||||+|++|+|..++.+||+ +|+|.+|+.|++||++||+||+++|++++.+|..++
T Consensus 106 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p~-----ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~ 175 (214)
T 3tq6_A 106 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQ-----EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEM 175 (214)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSSCSSHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCcccccchhhhhHHHHHHhhccCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556899999999999999999999999988875 899999999999999999999999999999999775
No 38
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.57 E-value=2.6e-17 Score=149.59 Aligned_cols=70 Identities=11% Similarity=0.182 Sum_probs=65.4
Q ss_pred hhcCCCCCCCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCC
Q 021138 23 LRANGQDAVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 97 (317)
Q Consensus 23 ~~~~~~~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k 97 (317)
.|..+|||+||||+||||+|++|+|..++.+||+ +|+|.+|+.|+.||++||+||+++|++++.+|+.++
T Consensus 138 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p~-----ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~ 207 (238)
T 3tmm_A 138 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQ-----EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEM 207 (238)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSCCSSHH-----HHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCCCCCcHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556899999999999999999999999988876 799999999999999999999999999999999775
No 39
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.51 E-value=5.2e-15 Score=126.12 Aligned_cols=68 Identities=12% Similarity=0.240 Sum_probs=65.6
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHhhCCCCchhhhhhhHHhhhhcCCChHHhhhhhhhhhhhccCCCCCC
Q 021138 29 DAVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 97 (317)
Q Consensus 29 ~~~pkr~~~~~~~f~~~~r~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~a~~~~~~y~~~k 97 (317)
|+.||||++|||+|+++.|..++++||++++ ++|+|.+|+.|+.||++||++|.+.|+.++.+|..+.
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~-~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~ 69 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRN-SEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKY 69 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCCH-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999998 9999999999999999999999999999999988765
No 40
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=56.70 E-value=9.4 Score=33.03 Aligned_cols=39 Identities=10% Similarity=0.216 Sum_probs=26.7
Q ss_pred HHHHHhh-CCCCchhhhhhhHHhhhhcCCChHHhhhhhhh
Q 021138 47 VKRLRSE-NSDLSVTLGLRKHIGKTYKELPPEQKARYKKR 85 (317)
Q Consensus 47 r~~~~~~-~p~~~~~~~~~k~~g~~wk~l~~~ek~~y~~~ 85 (317)
+..+.++ .|-+.+..--...+|..|+.+|+++++.|.+.
T Consensus 61 ~~~v~~~l~p~~D~~~~a~~vLG~~wr~at~~Qr~~F~~~ 100 (211)
T 2qgu_A 61 FQLVDQKIVPRADFKRTTQIAMGRFWSQATPEQQQQIQDG 100 (211)
T ss_dssp HHHHHHHTGGGBCHHHHHHHHHGGGTTTSCHHHHHHHHHH
T ss_pred HHHHHHHhhhhcCHHHHHHHHHhHhHhhCCHHHHHHHHHH
Confidence 3333333 35566644446677999999999999988653
No 41
>1qfq_B N36, 36-MER N-terminal peptide of the N protein; bacteriophage lambda, antitermination, peptide-RNA-complex; NMR {Enterobacteria phage lambda} SCOP: j.9.5.1
Probab=22.95 E-value=48 Score=19.74 Aligned_cols=9 Identities=56% Similarity=0.981 Sum_probs=5.9
Q ss_pred chHHhhhhc
Q 021138 2 DSQQRKRKR 10 (317)
Q Consensus 2 ~~~~~~~~~ 10 (317)
|.|.|+|.|
T Consensus 1 daq~rrrer 9 (35)
T 1qfq_B 1 DAQTRRRER 9 (35)
T ss_dssp CCHHHHHHH
T ss_pred ChhhHHHHH
Confidence 456777766
No 42
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.86 E-value=78 Score=22.69 Aligned_cols=39 Identities=15% Similarity=0.266 Sum_probs=24.7
Q ss_pred HHHHHHHHHhCcch----hhccccccccH-HHHHHHHhcccCCc
Q 021138 123 EEKKKAIREIGFES----LLELRCGKLKR-KLCHWLVNQFKPER 161 (317)
Q Consensus 123 ~~qk~~I~~~GFg~----LL~i~~~~l~~-~L~~wL~~~~d~~t 161 (317)
++|.+-+.+|||.. +--+....-+. .-+.||..+.++.+
T Consensus 30 e~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~~s 73 (74)
T 1vej_A 30 QQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGASGPSS 73 (74)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTCCCCCC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCCCCCC
Confidence 56788899999942 22222233332 34689999888765
Done!