BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021140
(317 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P56688|MOIH_LIBEM Mandibular organ-inhibiting hormone OS=Libinia emarginata PE=1 SV=1
Length = 137
Score = 36.2 bits (82), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 176 KMFSKIMGVKDGGMAIKINGASDHIAEVRRIFQPTVKGIRIRTLEEVIEQLDEANKIFKV 235
K+ + +MG +GG + AS H E R+IF P+ KG+ R L +E + K
Sbjct: 37 KLLATLMGSSEGG---ALESASQHSLEKRQIFDPSCKGLYDRGLFSDLEH------VCKD 87
Query: 236 AFTLF--AIATLLCPIGSYISTLFLHPIMDV 264
+ L+ T C + Y + +F + D+
Sbjct: 88 CYNLYRNPQVTSACRVNCYSNRVFRQCMEDL 118
>sp|Q9DC33|HM20A_MOUSE High mobility group protein 20A OS=Mus musculus GN=Hmg20a PE=2 SV=1
Length = 346
Score = 35.8 bits (81), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 2 DSQQRKRKRQPGGL---QKKGAPILRANGQDAVPTSSTYGFVSYFNEEVKRLRSENSDLS 58
D Q+ KR GG +K+ P+ +N P S G+V + NE ++LR++ ++
Sbjct: 77 DEQRSKR----GGWSKGRKRKKPLRDSNA----PKSPLTGYVRFMNERREQLRAKRPEVP 128
Query: 59 VTLGLRKHIGKTYKELPPEQKARY 82
+ + +G + +LPPE+K RY
Sbjct: 129 FP-EITRMLGNEWSKLPPEEKQRY 151
>sp|Q9NP66|HM20A_HUMAN High mobility group protein 20A OS=Homo sapiens GN=HMG20A PE=1 SV=1
Length = 347
Score = 35.8 bits (81), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 2 DSQQRKRKRQPGGL---QKKGAPILRANGQDAVPTSSTYGFVSYFNEEVKRLRSENSDLS 58
D Q+ KR GG +K+ P+ +N P S G+V + NE ++LR++ ++
Sbjct: 78 DEQRSKR----GGWSKGRKRKKPLRDSNA----PKSPLTGYVRFMNERREQLRAKRPEVP 129
Query: 59 VTLGLRKHIGKTYKELPPEQKARY 82
+ + +G + +LPPE+K RY
Sbjct: 130 FP-EITRMLGNEWSKLPPEEKQRY 152
>sp|Q5ZKF4|HM20A_CHICK High mobility group protein 20A OS=Gallus gallus GN=HMG20A PE=2
SV=1
Length = 348
Score = 35.4 bits (80), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 11/84 (13%)
Query: 2 DSQQRKRKRQPGGL---QKKGAPILRANGQDAVPTSSTYGFVSYFNEEVKRLRSENSDLS 58
+ QQR ++ GG +K+ P+ +N P S G+V + NE ++LR++ ++
Sbjct: 78 EEQQRTKR---GGWAKGRKRKKPLRDSNA----PKSPLTGYVRFMNERREQLRAKRPEVP 130
Query: 59 VTLGLRKHIGKTYKELPPEQKARY 82
+ + +G + +LPPE+K RY
Sbjct: 131 FP-EITRMLGNEWSKLPPEEKRRY 153
>sp|Q1EA54|HAS1_COCIM ATP-dependent RNA helicase HAS1 OS=Coccidioides immitis (strain RS)
GN=HAS1 PE=3 SV=1
Length = 604
Score = 35.0 bits (79), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 19/147 (12%)
Query: 6 RKRKRQPGGLQKKGAPILRANGQDAV--PTSSTYGFVSYFNEEVKRLRSENSDL------ 57
+KRKR+ GG A + AN ++ T S+ G S +E+K+ ++E+ L
Sbjct: 13 KKRKRKHGG--SGNAALTSANAAKSLVKTTLSSKGEASAEKQEMKKRKTEHPSLMEDRVS 70
Query: 58 ---SVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNSHSGDNEIVETKCVPERF 114
+ P EQ K E+ + N+ S + +T+ P++F
Sbjct: 71 ENVVDEPEEVVEEDSEASQPPVEQDDEQKSESEQQPELPSLNALS----LPQTENEPQKF 126
Query: 115 CALVKSLSEEKKKAIREIGFESLLELR 141
L +LSE+ KAI+E+GFE++ E++
Sbjct: 127 TEL--NLSEKTLKAIQEMGFETMTEIQ 151
>sp|Q4H2R2|SSRP1_CIOIN FACT complex subunit SSRP1 OS=Ciona intestinalis GN=SSRP1 PE=2 SV=1
Length = 704
Score = 35.0 bits (79), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 5 QRKRKRQPGGLQKKGAPILRANGQDAVPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLR 64
+R++K PG +++K P + + NE R ++EN +SVT L
Sbjct: 534 ERRQKETPGKVKRKKK-------DPNAPKRPQSAYFLWLNENRGRFKAENKGISVT-ELT 585
Query: 65 KHIGKTYKELPPEQKARYKK 84
K GK +K++ P++K ++++
Sbjct: 586 KLAGKEWKKIDPDEKQKFER 605
>sp|Q0IDX7|SAHH_SYNS3 Adenosylhomocysteinase OS=Synechococcus sp. (strain CC9311) GN=ahcY
PE=3 SV=1
Length = 476
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 23/91 (25%)
Query: 195 GASDHIAEVRRI--FQPTVKGIRIRTLEEVIEQLDEANKIFKVAFTLFAI---------- 242
GA+ IAEV I Q ++G R+ LE+V++Q+D IF A + +
Sbjct: 282 GATVCIAEVDPICALQAAMEGYRVVRLEDVVDQMD----IFVTATGNYQVIRNEHLVKMK 337
Query: 243 -ATLLCPIGSYISTLFLHPIMDVSSIKSLNW 272
++C IG + + + DV+S+KS W
Sbjct: 338 DEAIVCNIGHFDNEI------DVASLKSYEW 362
>sp|B7LL09|LAMB_ESCF3 Maltoporin OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698
/ CDC 0568-73) GN=lamB PE=3 SV=1
Length = 446
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 31 VPTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQK-ARYKKRDERM 89
P ST V Y N E +R +N+ +TL + G + P + A Y K DE+
Sbjct: 342 TPIMSTLLEVGYDNVESQRTGDKNNQYKITLAQQWQAGDSIWSRPAIRVFATYAKWDEKW 401
Query: 90 GNSGNSNSHSGDNEIVETKCVPERF 114
G N NS + N K VP F
Sbjct: 402 GYDYNDNSKTNPN---YGKAVPANF 423
>sp|O42342|SOX7_XENLA Transcription factor Sox-7 OS=Xenopus laevis GN=sox7 PE=2 SV=1
Length = 362
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 38 GFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERM 89
F+ + +E KRL +N DL L K +GK++K L P QK Y + ER+
Sbjct: 48 AFMVWAKDERKRLAVQNPDLH-NAELSKMLGKSWKALSPAQKRPYVEEAERL 98
>sp|Q28GD5|SOX7_XENTR Transcription factor Sox-7 OS=Xenopus tropicalis GN=sox7 PE=2
SV=1
Length = 362
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 38 GFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERM 89
F+ + +E KRL +N DL L K +GK++K L P QK Y + ER+
Sbjct: 48 AFMVWAKDERKRLAVQNPDLH-NAELSKMLGKSWKALSPAQKRPYVEEAERL 98
>sp|Q32L68|HM20B_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1-related OS=Bos taurus
GN=HMG20B PE=2 SV=1
Length = 317
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 32 PTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDER 88
P + G+V + NE +++R+ + DL + K +G + +L P +K RY ER
Sbjct: 70 PKAPVTGYVRFLNERREQIRTRHPDLPFP-EITKMLGAEWSKLQPAEKQRYLDEAER 125
>sp|Q9P0W2|HM20B_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1-related OS=Homo sapiens
GN=HMG20B PE=1 SV=1
Length = 317
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 32 PTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDER 88
P + G+V + NE +++R+ + DL + K +G + +L P +K RY ER
Sbjct: 70 PKAPVTGYVRFLNERREQIRTRHPDLPFP-EITKMLGAEWSKLQPTEKQRYLDEAER 125
>sp|Q0AEI7|MUTS_NITEC DNA mismatch repair protein MutS OS=Nitrosomonas eutropha (strain
C91) GN=mutS PE=3 SV=1
Length = 880
Score = 32.0 bits (71), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 134 FESLLELRCGKL-KRKLCHWLVNQFKPERNIIELHGQKLELCPKMFSKIMGVKDGGMAIK 192
SLL++ + R L HWL P RN I L Q+L+ S ++G K G +
Sbjct: 304 LSSLLDICATSMGSRLLRHWL---HHPLRNRITLQ-QRLDAV----SDLIGAKPGILYAG 355
Query: 193 INGASDHIAEVRRIF-QPTVKGIRIRTLEEVIEQLDEANKIFKVAFTLFAIA 243
I HIA++ RI + ++ R R L + + L +I K+ T AIA
Sbjct: 356 IRERLKHIADIERITSRIALRTARPRDLSGLRDSLTALPEIIKLITTSTAIA 407
>sp|Q9Z104|HM20B_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1-related OS=Mus musculus
GN=Hmg20b PE=1 SV=1
Length = 317
Score = 31.6 bits (70), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 32 PTSSTYGFVSYFNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARY 82
P + G+V + NE +++R+ + DL + K +G + +L P +K RY
Sbjct: 70 PKAPVTGYVRFLNERREQIRTRHPDLPFP-EITKMLGAEWSKLQPAEKQRY 119
>sp|Q9ZEJ6|DNAK1_NOSS1 Chaperone protein dnaK1 OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=dnaK1 PE=3 SV=2
Length = 688
Score = 31.6 bits (70), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 19 GAPILRANGQDAVPTSSTYGFVSYFNEEVKRLRSENSDLS---VTLGLRKHIGKTYKELP 75
G P++ AN + T S GF V ++ + L+ ++++IG+ Y EL
Sbjct: 22 GKPVVIANAEGMRTTPSVVGFSKDGERVVGQMARRQTVLNPQNTFFAVKRYIGRRYNELS 81
Query: 76 PEQK-ARYKKRDERMGN 91
PE K Y R + +GN
Sbjct: 82 PESKRVPYTIRKDEVGN 98
>sp|P15424|MS116_YEAST ATP-dependent RNA helicase MSS116, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MSS116 PE=1
SV=1
Length = 664
Score = 31.6 bits (70), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 91 NSGNSNSHSGDNEIVETKCVPERFCALVKSLSEEKKKAI--REIGFESLLELRCGKLKRK 148
++ + N I ++ + E+F + + E KK I R+ +++++ K
Sbjct: 329 DTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSF 388
Query: 149 LCHWLVNQFKPERNIIELHGQ 169
LC L N+FK + I+E HG+
Sbjct: 389 LCSILKNEFKKDLPILEFHGK 409
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,161,814
Number of Sequences: 539616
Number of extensions: 4717324
Number of successful extensions: 13157
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 13144
Number of HSP's gapped (non-prelim): 53
length of query: 317
length of database: 191,569,459
effective HSP length: 117
effective length of query: 200
effective length of database: 128,434,387
effective search space: 25686877400
effective search space used: 25686877400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)