BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021141
         (317 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WV0|A Chain A, Crystal Structure Of The Gntr-Hutc Family Member Yvoa From
           Bacillus Subtilis
 pdb|2WV0|B Chain B, Crystal Structure Of The Gntr-Hutc Family Member Yvoa From
           Bacillus Subtilis
 pdb|2WV0|C Chain C, Crystal Structure Of The Gntr-Hutc Family Member Yvoa From
           Bacillus Subtilis
 pdb|2WV0|D Chain D, Crystal Structure Of The Gntr-Hutc Family Member Yvoa From
           Bacillus Subtilis
 pdb|2WV0|E Chain E, Crystal Structure Of The Gntr-Hutc Family Member Yvoa From
           Bacillus Subtilis
 pdb|2WV0|F Chain F, Crystal Structure Of The Gntr-Hutc Family Member Yvoa From
           Bacillus Subtilis
 pdb|2WV0|G Chain G, Crystal Structure Of The Gntr-Hutc Family Member Yvoa From
           Bacillus Subtilis
 pdb|2WV0|H Chain H, Crystal Structure Of The Gntr-Hutc Family Member Yvoa From
           Bacillus Subtilis
 pdb|2WV0|I Chain I, Crystal Structure Of The Gntr-Hutc Family Member Yvoa From
           Bacillus Subtilis
 pdb|2WV0|J Chain J, Crystal Structure Of The Gntr-Hutc Family Member Yvoa From
           Bacillus Subtilis
          Length = 243

 Score = 31.2 bits (69), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 76/207 (36%), Gaps = 35/207 (16%)

Query: 75  FRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSEELPSILV 134
           +R++G+     K K           F  D  +  R +   +R +D  +IDS+EEL +IL 
Sbjct: 65  YRLKGRGTFVSKPK-MEQALQGLTSFTED--MKSRGMTPGSRLIDYQLIDSTEELAAILG 121

Query: 135 VNLQIPLYPAAIFQGEND------GEGMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEV 188
                 ++     +  ND         +   L  +L+ES       HFQ      I D +
Sbjct: 122 CGHPSSIHKITRVRLANDIPMAIESSHIPFELAGELNES-------HFQSS----IYDHI 170

Query: 189 ERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYLGE 248
           ER    P   I+  ++ L         E    +T E  IL      PVL   +  +    
Sbjct: 171 ERYNSIP---ISRAKQEL---------EPSAATTEEANILGIQKGAPVLLIKRTTYLQNG 218

Query: 249 NYFEIDLDVHRFSYLSRKTFAAFQDRF 275
             FE    V+R     R TF  + DR 
Sbjct: 219 TAFEHAKSVYRG---DRYTFVHYMDRL 242


>pdb|1XFI|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
           At2g17340
 pdb|2Q40|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
           Gene Product From Arabidopsis Thaliana At2g17340
          Length = 367

 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 9/109 (8%)

Query: 204 ERLKILSRLV--NGEDLHLSTTEKKILNTYNEKPV--LSRPQHEFYLGENYFEIDLDVHR 259
           E  +ILS+L   NG+ L + T++  I N+ N+ PV  LSR   E      Y   D D+  
Sbjct: 261 ELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELA----YLSSDADLVI 316

Query: 260 FSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCI-RLNEI 307
              + R        +FK   L  G+       E L   +  C+ + NE+
Sbjct: 317 VEGMGRGIETNLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFKFNEV 365


>pdb|1X5I|A Chain A, The Solution Structure Of The Fourth Fibronectin Type Iii
           Domain Of Human Neogenin
          Length = 126

 Score = 30.0 bits (66), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 19/110 (17%)

Query: 48  PKAGSSLSFCPLEKKMSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLS 107
           P+  SSL   PL   +  SW+P E     VRG          +A  +    P A  +   
Sbjct: 28  PEVPSSLHVRPLVTSIVVSWTPPENQNIVVRG----------YAIGYGIGSPHAQTI--- 74

Query: 108 QRKIDHIARFVDLPVIDSSEE----LPSILVVNLQIPLYPAAIFQGENDG 153
             K+D+  R+  +  +D S      L +   V   IPLY +A+ +    G
Sbjct: 75  --KVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHTSG 122


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,561,212
Number of Sequences: 62578
Number of extensions: 403008
Number of successful extensions: 825
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 823
Number of HSP's gapped (non-prelim): 6
length of query: 317
length of database: 14,973,337
effective HSP length: 99
effective length of query: 218
effective length of database: 8,778,115
effective search space: 1913629070
effective search space used: 1913629070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)