BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021141
(317 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3A7T7|Y297_PELCD UPF0061 protein Pcar_0297 OS=Pelobacter carbinolicus (strain DSM
2380 / Gra Bd 1) GN=Pcar_0297 PE=3 SV=1
Length = 492
Score = 35.4 bits (80), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 263 LSRKTFAAFQDRFKLCKLD-----FGLTIQENKTENLPENMLCCIRLNEIDYSN 311
L+ ++ A F D F+ ++D GL +E+ +L +++L C++ N+ DY+N
Sbjct: 326 LANRSLATFPDIFQRLRMDGMRAKLGLFTKEDADMSLMQDLLTCMQQNQADYTN 379
>sp|Q5XI57|TTL10_RAT Protein polyglycylase TTLL10 OS=Rattus norvegicus GN=Ttll10 PE=2
SV=2
Length = 679
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 170 KDLPVHFQEHVNRIINDEVERVKGFPLDTI-NSFRERLK 207
KD V EH+NR IND+ + KG P D + +F +R++
Sbjct: 424 KDSTVWSMEHLNRYINDKFRKSKGLPRDWVFTTFTKRMQ 462
>sp|A4Q9F3|TTL10_MOUSE Protein polyglycylase TTLL10 OS=Mus musculus GN=Ttll10 PE=1 SV=1
Length = 704
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 160 LYFKLSESYSKDLPVHFQEHVNRIINDEVERVKGFPLDTI-NSFRERLK 207
LY L ES V EH+NR IND+ + KG P D + +F +R++
Sbjct: 416 LYTLLKEST-----VWTMEHLNRYINDKFRKTKGLPRDWVFTTFTKRMQ 459
>sp|Q90610|NEO1_CHICK Neogenin (Fragment) OS=Gallus gallus PE=2 SV=1
Length = 1443
Score = 32.7 bits (73), Expect = 3.9, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 19/115 (16%)
Query: 48 PKAGSSLSFCPLEKKMSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLS 107
P+ SSL PL + SW+P E VRG +A + P A +
Sbjct: 724 PEVPSSLHVRPLVTSIVVSWTPPENQNIVVRG----------YAIGYGIGSPHAQTI--- 770
Query: 108 QRKIDHIARFVDLPVIDSSEE----LPSILVVNLQIPLYPAAIFQGENDGEGMNL 158
K+D+ R+ + +D S L + V IPLY +A+ + +D ++L
Sbjct: 771 --KVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHSDTSEVDL 823
>sp|P97603|NEO1_RAT Neogenin (Fragment) OS=Rattus norvegicus GN=Neo1 PE=2 SV=1
Length = 1377
Score = 32.3 bits (72), Expect = 4.2, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 19/115 (16%)
Query: 48 PKAGSSLSFCPLEKKMSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLS 107
P+ SSL PL + SW+P E VRG +A + P A +
Sbjct: 708 PEVPSSLHVRPLVTSIVVSWTPPENQNIVVRG----------YAIGYGIGSPHAQTI--- 754
Query: 108 QRKIDHIARFVDLPVIDSSEE----LPSILVVNLQIPLYPAAIFQGENDGEGMNL 158
K+D+ R+ + +D S L + V IPLY +A+ + D ++L
Sbjct: 755 --KVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHTDTSEVDL 807
>sp|P97798|NEO1_MOUSE Neogenin OS=Mus musculus GN=Neo1 PE=1 SV=1
Length = 1493
Score = 32.3 bits (72), Expect = 4.3, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 19/115 (16%)
Query: 48 PKAGSSLSFCPLEKKMSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLS 107
P+ SSL PL + SW+P E VRG +A + P A +
Sbjct: 770 PEVPSSLHVRPLVTSIVVSWTPPENQNIVVRG----------YAIGYGIGSPHAQTI--- 816
Query: 108 QRKIDHIARFVDLPVIDSSEE----LPSILVVNLQIPLYPAAIFQGENDGEGMNL 158
K+D+ R+ + +D S L + V IPLY +A+ + D ++L
Sbjct: 817 --KVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHTDTSEVDL 869
>sp|Q2NKJ3|CTC1_HUMAN CST complex subunit CTC1 OS=Homo sapiens GN=CTC1 PE=1 SV=2
Length = 1217
Score = 32.3 bits (72), Expect = 4.7, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 38 SFPPKVLLQRPKAGSSLSFCPLEKKMSNSWSPIEPSTF 75
SF PK LL P+A S L C L ++++ SW + PS F
Sbjct: 566 SFDPKALLPLPEA-SYLPSCQLNRRLAWSWLCLLPSAF 602
>sp|Q92859|NEO1_HUMAN Neogenin OS=Homo sapiens GN=NEO1 PE=1 SV=2
Length = 1461
Score = 32.3 bits (72), Expect = 4.8, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 19/115 (16%)
Query: 48 PKAGSSLSFCPLEKKMSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLS 107
P+ SSL PL + SW+P E VRG +A + P A +
Sbjct: 739 PEVPSSLHVRPLVTSIVVSWTPPENQNIVVRG----------YAIGYGIGSPHAQTI--- 785
Query: 108 QRKIDHIARFVDLPVIDSSEE----LPSILVVNLQIPLYPAAIFQGENDGEGMNL 158
K+D+ R+ + +D S L + V IPLY +A+ + D ++L
Sbjct: 786 --KVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHTDTSEVDL 838
>sp|A0KM38|FLGI_AERHH Flagellar P-ring protein OS=Aeromonas hydrophila subsp. hydrophila
(strain ATCC 7966 / NCIB 9240) GN=flgI PE=3 SV=1
Length = 365
Score = 32.3 bits (72), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 85/191 (44%), Gaps = 27/191 (14%)
Query: 42 KVLLQRPKAGSSLSFCPLEKKMSNSWSPIEPSTFRVRGQNY-----LRDKKKDF-APNFA 95
KV++ P G + +E+++ NS+S + TF + ++ L D D PN A
Sbjct: 155 KVVINTPTVGRIANGATVEREVPNSFSQGDTITFNLNRPDFTTARRLADVVNDLVGPNTA 214
Query: 96 -AYCPFAADVFLSQ---RKIDHIARFVDLPVIDSSEELPSI-------LVVNLQIPLYPA 144
A + V+ + +++ ++A +L V +SE I +V+ Q+ L PA
Sbjct: 215 QALDATSVKVYAPRDPGQRVSYLATIENLEVDPASEAAKIIVNSRTGTIVIGSQVRLKPA 274
Query: 145 AIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHV---NRIINDEVERVKGFPLDTINS 201
AI G L + ++ S+ P+ + N IN + E+ + F LDT +
Sbjct: 275 AISHG-------GLTVTIAENQQVSQPNPLSGGQTAVTNNSTINVQQEQGRMFKLDTGAT 327
Query: 202 FRERLKILSRL 212
+ ++ ++++
Sbjct: 328 LDDLVRAVNQV 338
>sp|Q8I4R2|RBP3_PLAF7 Reticulocyte-binding protein 3 OS=Plasmodium falciparum (isolate 3D7)
GN=Rh3 PE=3 SV=1
Length = 2792
Score = 31.6 bits (70), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 21/145 (14%)
Query: 167 SYSKDLPVHFQEHVNRIIND----EVERVKGFPLDTINSFRERLKILSRLVNGEDLHLST 222
SY KD + F++ + I+ND +++ D++N+ E +K+ + ++N E H+ +
Sbjct: 1495 SYRKDSLLEFEKKITNILNDVLIFNMKKTLENKKDSVNNILEGMKLTASIIN-EKSHVLS 1553
Query: 223 TEKKILNTY-----------NEKPVLSRPQHEFYLGENYFEIDLDVHRFSYLSRKTFAAF 271
+ ++L NEK ++ Q E Y+G+ + I D++R + + F+
Sbjct: 1554 EKIRVLRNQKNIKDDEELLNNEKSKIAYEQFELYMGKLEYAIP-DINRLHDKAERMFSKA 1612
Query: 272 QDRFKLCKLDFGLTIQENKTENLPE 296
Q K LD L I ENK NL E
Sbjct: 1613 QFLMKPM-LDMSL-ILENK--NLEE 1633
>sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6
OS=Drosophila melanogaster GN=pol PE=4 SV=1
Length = 1058
Score = 31.2 bits (69), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 206 LKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYLGENYFEIDLDVHRFSYLSR 265
L +SR +N +++ ST EK++L V + YL +FEI D S+L R
Sbjct: 531 LSYISRTLNEHEINYSTIEKELLAI-----VWATKTFRHYLLGRHFEISSDHQPLSWLYR 585
Query: 266 K---TFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCIRLNEIDYSNYRQ 314
+ R KL + DF + + K EN + L I+L E S Q
Sbjct: 586 MKDPNSKLTRWRVKLSEFDFDIKYIKGK-ENCVADALSRIKLEETYLSEQTQ 636
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,609,518
Number of Sequences: 539616
Number of extensions: 5234312
Number of successful extensions: 11014
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 11012
Number of HSP's gapped (non-prelim): 16
length of query: 317
length of database: 191,569,459
effective HSP length: 117
effective length of query: 200
effective length of database: 128,434,387
effective search space: 25686877400
effective search space used: 25686877400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)