Query 021141
Match_columns 317
No_of_seqs 138 out of 225
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 13:19:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021141.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021141hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4day_C Fanconi anemia group M 30.6 13 0.00045 24.6 0.4 19 276-294 14-32 (37)
2 3bqa_A Sensor protein PHOQ; hi 9.3 48 0.0016 28.2 -0.9 19 241-259 68-86 (148)
3 2zou_A Spondin-1; beta-sandwic 8.3 1.5E+02 0.0051 24.5 1.7 24 282-305 54-80 (149)
4 3npd_A Putative secreted prote 7.4 2E+02 0.0069 23.2 2.0 15 276-290 29-43 (118)
5 3coo_A Spondin-1; reelin-N dom 6.9 1.4E+02 0.0048 25.8 1.0 24 282-305 69-95 (180)
6 3l4n_A Monothiol glutaredoxin- 6.4 4.3E+02 0.015 20.8 3.6 57 225-281 5-77 (127)
7 2dgb_A Hypothetical protein PU 5.2 3.3E+02 0.011 20.2 2.1 41 249-295 42-84 (84)
8 3iz5_n 60S ribosomal protein L 4.8 3E+02 0.01 20.4 1.6 14 71-84 30-43 (69)
9 3izc_n 60S ribosomal protein R 4.6 2.3E+02 0.0079 21.6 0.8 14 71-84 39-52 (78)
10 1mjt_A Nitric-oxide synthase h 4.1 6E+02 0.021 24.3 3.4 46 272-317 147-198 (347)
No 1
>4day_C Fanconi anemia group M protein; OB fold, protein binding-hydrolase complex; 3.30A {Homo sapiens}
Probab=30.57 E-value=13 Score=24.65 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=15.3
Q ss_pred ceeEEeeeEeeecCCCCCC
Q 021141 276 KLCKLDFGLTIQENKTENL 294 (317)
Q Consensus 276 k~lvvD~gf~IEg~~~eEL 294 (317)
=++..|+||.++..++|.+
T Consensus 14 FSVnFDLGf~~~dSDde~~ 32 (37)
T 4day_C 14 FSVTFDLGFCSPDSDDEIL 32 (37)
T ss_pred EEEEeccccccCCcchhhh
Confidence 3789999999998776654
No 2
>3bqa_A Sensor protein PHOQ; histidine kinase sensor domain, ATP-binding, inner membrane, magnesium, membrane, metal-binding, nucleotide-binding; 2.00A {Escherichia coli} PDB: 3bq8_A 1yax_A
Probab=9.34 E-value=48 Score=28.18 Aligned_cols=19 Identities=26% Similarity=0.538 Sum_probs=16.0
Q ss_pred ceeeecCCCeEEEEEeecC
Q 021141 241 QHEFYLGENYFEIDLDVHR 259 (317)
Q Consensus 241 ~~~y~~G~nYlEiDvDI~s 259 (317)
+..|-+.++|+|||.|++.
T Consensus 68 ~~eWLkk~gf~Eidtd~~~ 86 (148)
T 3bqa_A 68 QPDWLKSNGFHEIEADVND 86 (148)
T ss_dssp CGGGSSSCEEEEEEEEHHH
T ss_pred CHHHhcCCCcEEEecCcch
Confidence 4567777899999999997
No 3
>2zou_A Spondin-1; beta-sandwich, extracellular protein, cell adhesion, extrace matrix, glycoprotein, secreted; 1.45A {Homo sapiens}
Probab=8.28 E-value=1.5e+02 Score=24.48 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=18.9
Q ss_pred eeEeeecCCCCCC---ccceeceEEec
Q 021141 282 FGLTIQENKTENL---PENMLCCIRLN 305 (317)
Q Consensus 282 ~gf~IEg~~~eEL---PE~lLG~vRl~ 305 (317)
.||+||++.++.. +...+|.+.+.
T Consensus 54 ~GFllqAr~~~~~~~~~~~~vG~F~~~ 80 (149)
T 2zou_A 54 RGFTLIALRENREGDKEEDHAGTFQII 80 (149)
T ss_dssp SEEEEEEEETTCCSCSGGGBCSEEEES
T ss_pred EEEEEEEEecCCccCCCCcceEEEEeC
Confidence 5999999887653 56789998874
No 4
>3npd_A Putative secreted protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CXS; 1.60A {Pseudomonas aeruginosa}
Probab=7.40 E-value=2e+02 Score=23.24 Aligned_cols=15 Identities=33% Similarity=0.383 Sum_probs=12.1
Q ss_pred ceeEEeeeEeeecCC
Q 021141 276 KLCKLDFGLTIQENK 290 (317)
Q Consensus 276 k~lvvD~gf~IEg~~ 290 (317)
..=++|-|+++||+.
T Consensus 29 nEdiLDqgYTVeG~~ 43 (118)
T 3npd_A 29 NEDILDQGYTVEGNQ 43 (118)
T ss_dssp SSSEEEEEEEEETTE
T ss_pred hhHHhhcceeechHH
Confidence 445899999999963
No 5
>3coo_A Spondin-1; reelin-N domain, cell adhesion, extracellular MAT glycoprotein, secreted; 2.00A {Homo sapiens} PDB: 2zot_A
Probab=6.86 E-value=1.4e+02 Score=25.75 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=18.9
Q ss_pred eeEeeecCCCCCC---ccceeceEEec
Q 021141 282 FGLTIQENKTENL---PENMLCCIRLN 305 (317)
Q Consensus 282 ~gf~IEg~~~eEL---PE~lLG~vRl~ 305 (317)
.||+||++.++.. +...+|.+.+.
T Consensus 69 ~GFlLqAr~~~~~~~~~~~~vGtF~~~ 95 (180)
T 3coo_A 69 RGFTLIALRENREGDKEEDHAGTFQII 95 (180)
T ss_dssp SCCEEEEEETTCCSSSGGGBCSEEECS
T ss_pred eEEEEEEEcCCCCccCCCCceeEEEec
Confidence 4899999887653 56789999874
No 6
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}
Probab=6.43 E-value=4.3e+02 Score=20.83 Aligned_cols=57 Identities=14% Similarity=0.200 Sum_probs=34.8
Q ss_pred HHHHhhcCCeeeee--cCceeee------------cCCCeEEEEEeecCchHHHHHHHHHhhh--ccceeEEe
Q 021141 225 KKILNTYNEKPVLS--RPQHEFY------------LGENYFEIDLDVHRFSYLSRKTFAAFQD--RFKLCKLD 281 (317)
Q Consensus 225 ~~l~~avn~KPvLi--~~~~~y~------------~G~nYlEiDvDI~sfS~vAr~~l~~~~~--~~k~lvvD 281 (317)
..+.+.++..||.+ .+.|.|. -+..|-++|||...-..-.+..+....| .+..+.||
T Consensus 5 ~~~~~ii~~~~Vvvysk~~Cp~C~~ak~lL~~~~~~~v~~~~idid~~~d~~~~~~~l~~~~G~~tVP~IfI~ 77 (127)
T 3l4n_A 5 KEYSLILDLSPIIIFSKSTCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLVN 77 (127)
T ss_dssp HHHHHHHTSCSEEEEECTTCHHHHHHHHHHHHHEEEESCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEET
T ss_pred HHHHHHHccCCEEEEEcCCCccHHHHHHHHHHhcccCCCcEEEEecCCCCHHHHHHHHHHHcCCCCcceEEEC
Confidence 34777788888876 3466552 1567999999987523334455544433 34566555
No 7
>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A
Probab=5.19 E-value=3.3e+02 Score=20.18 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=20.4
Q ss_pred CeEEEEEeecCchHHHHH-HHHHhhhccceeEE-eeeEeeecCCCCCCc
Q 021141 249 NYFEIDLDVHRFSYLSRK-TFAAFQDRFKLCKL-DFGLTIQENKTENLP 295 (317)
Q Consensus 249 nYlEiDvDI~sfS~vAr~-~l~~~~~~~k~lvv-D~gf~IEg~~~eELP 295 (317)
.|||+++|..+ ..-|+. +-.+| ..+.+-|+ |.-+-++ +|||
T Consensus 42 K~~~l~~~~~~-~~~a~~~v~~~~-~LLaNpVie~y~~~~~----~~~~ 84 (84)
T 2dgb_A 42 KVLEIVFPAEN-LLEAEEKAKAMG-ALLANPVMEVYALEAL----KELP 84 (84)
T ss_dssp EEEEEEEECSS-HHHHHHHHHHHH-HHHSCTTTEEEEEEEE----EEEC
T ss_pred EEEEEEecCCC-HHHHHHHHHHHH-HHhCCccceEEEEEEe----cCCC
Confidence 57799998654 333222 44444 44433333 3333333 6665
No 8
>3iz5_n 60S ribosomal protein L38 (L38E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_n
Probab=4.80 E-value=3e+02 Score=20.40 Aligned_cols=14 Identities=36% Similarity=0.688 Sum_probs=11.6
Q ss_pred CCCCeEEcCCCccC
Q 021141 71 EPSTFRVRGQNYLR 84 (317)
Q Consensus 71 ~~~~F~VRG~~Yl~ 84 (317)
+-..|+||+..||-
T Consensus 30 ~~~KfKvRcsryLY 43 (69)
T 3iz5_n 30 DAVKFKVRCSKYLY 43 (69)
T ss_dssp SCCCCEECSSSCCC
T ss_pred CceEEEEEecCceE
Confidence 46889999988884
No 9
>3izc_n 60S ribosomal protein RPL38 (L38E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_n 3u5e_k 3u5i_k 4b6a_k
Probab=4.63 E-value=2.3e+02 Score=21.57 Aligned_cols=14 Identities=36% Similarity=0.657 Sum_probs=11.7
Q ss_pred CCCCeEEcCCCccC
Q 021141 71 EPSTFRVRGQNYLR 84 (317)
Q Consensus 71 ~~~~F~VRG~~Yl~ 84 (317)
+-..|+||+..||-
T Consensus 39 ~~tKFKvRcsryLY 52 (78)
T 3izc_n 39 RQTKFKVRGSSSLY 52 (78)
T ss_dssp CCCEEEEEESSCCC
T ss_pred cceEEEEEeccceE
Confidence 35899999999984
No 10
>1mjt_A Nitric-oxide synthase homolog; sanos, NO, NOS, bacterial, MRSA, seitu, oxidoreductase; HET: SUC HEM NAD; 2.40A {Staphylococcus aureus} SCOP: d.174.1.1
Probab=4.10 E-value=6e+02 Score=24.31 Aligned_cols=46 Identities=15% Similarity=0.240 Sum_probs=35.0
Q ss_pred hhccce-eEEee-eEeeecCCCC----CCccceeceEEecccccCccccCCC
Q 021141 272 QDRFKL-CKLDF-GLTIQENKTE----NLPENMLCCIRLNEIDYSNYRQLGV 317 (317)
Q Consensus 272 ~~~~k~-lvvD~-gf~IEg~~~e----ELPE~lLG~vRl~~iD~~~a~~l~~ 317 (317)
+|.-.. --.|+ =++||+..++ |+|+.++-=|-|.|.++..-..|||
T Consensus 147 lGW~~~~t~FDvLPLviq~~g~~p~~feiP~~lvlEV~i~HP~~~wf~~LgL 198 (347)
T 1mjt_A 147 LGWKGKGTNFDVLPLIYQLPNESVKFYEYPTSLIKEVPIEHNHYPKLRKLNL 198 (347)
T ss_dssp HTCCCCCSSCCBCCEEEECTTSCCEEECCCGGGSCEEECCCTTCGGGGGGCC
T ss_pred cCCCCCCCCCCcccEEEEeCCCCCeEEeCCHHHceeecCCCCCchhHHHcCC
Confidence 444432 33466 6788886654 8999999999999999988888886
Done!