Query 021141
Match_columns 317
No_of_seqs 138 out of 225
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 13:20:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021141.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021141hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mg7a1 d.14.1.6 (A:14-187) Ea 10.7 41 0.003 27.0 1.2 70 198-276 25-99 (174)
2 d1eucb1 c.23.4.1 (B:246-393) S 8.0 60 0.0044 25.4 1.2 81 209-293 21-118 (148)
3 d2nu7b1 c.23.4.1 (B:239-388) S 7.5 65 0.0048 25.2 1.2 27 209-237 21-47 (150)
4 d2fsra1 d.108.1.1 (A:4-167) Pr 7.1 89 0.0064 22.1 1.8 23 282-306 142-164 (164)
5 d2gw6a1 c.52.2.1 (A:2-123) tRN 6.9 48 0.0035 25.4 0.0 66 82-165 56-121 (122)
6 d1wika_ c.47.1.1 (A:) Thioredo 6.8 47 0.0034 24.1 -0.0 34 226-259 7-56 (109)
7 d1unnc_ d.240.1.1 (C:) DNA pol 5.3 1.7E+02 0.012 20.4 2.4 24 293-317 86-109 (111)
8 d1om4a_ d.174.1.1 (A:) Nitric 4.9 2.4E+02 0.018 25.4 3.6 35 283-317 223-261 (418)
9 d3e7ma1 d.174.1.1 (A:77-497) N 4.8 2.3E+02 0.017 25.5 3.5 35 283-317 224-262 (421)
10 d2qqra1 b.34.9.1 (A:897-955) J 4.5 1.3E+02 0.0094 20.1 1.1 21 241-261 15-42 (59)
No 1
>d1mg7a1 d.14.1.6 (A:14-187) Early switch protein XOL-1, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=10.72 E-value=41 Score=26.97 Aligned_cols=70 Identities=20% Similarity=0.186 Sum_probs=41.1
Q ss_pred Chhhhh-hhcceeeeeeCCCcccchhhHHHHHhhcCCeeeeecCceeeecCCCe---EEE-EEeecCchHHHHHHHHHhh
Q 021141 198 TINSFR-ERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYLGENY---FEI-DLDVHRFSYLSRKTFAAFQ 272 (317)
Q Consensus 198 ~~d~fR-~RfKlIp~Vvng~~i~l~~~~~~l~~avn~KPvLi~~~~~y~~G~nY---lEi-DvDI~sfS~vAr~~l~~~~ 272 (317)
.+..|| +.+-.-|.||+--.. ..-+|| |=|++.-...--+-+.| -+| +++-+.+.++.+.+++-++
T Consensus 25 ~~~~~~~~~~~~APHvV~i~~~--------g~MAVN-K~C~v~s~il~~r~pks~~eH~Idev~~~~hg~it~~iI~DlL 95 (174)
T d1mg7a1 25 DDPNFRNSKLAAAPHTVHMMDS--------GFLAIN-RQCLVKGKAILAREPKSSNEHMIDDLPKHAHDQHTLSILRDFI 95 (174)
T ss_dssp -------CEEEEEEEEEEETTT--------EEEEEE-EEEEEEEEEEESSCCSSGGGSEECCCCCCTTHHHHHHHHHHHH
T ss_pred CCCCcccchhccCCeEEeeccc--------ceeeee-eeEEEeeeeccccCCCchhhhhHHHhhHhhhcceeHHHHHHHH
Confidence 457899 899999999986554 344677 44444211111111222 478 7888999999999988877
Q ss_pred hccc
Q 021141 273 DRFK 276 (317)
Q Consensus 273 ~~~k 276 (317)
+.++
T Consensus 96 e~mE 99 (174)
T d1mg7a1 96 DQLK 99 (174)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 6554
No 2
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=7.95 E-value=60 Score=25.44 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=43.8
Q ss_pred eeeeeCCCcccchhhHHHHHhhcCCeeeee---c--Cce-ee-------ecCCCeEEEEEee----cCchHHHHHHHHHh
Q 021141 209 LSRLVNGEDLHLSTTEKKILNTYNEKPVLS---R--PQH-EF-------YLGENYFEIDLDV----HRFSYLSRKTFAAF 271 (317)
Q Consensus 209 Ip~Vvng~~i~l~~~~~~l~~avn~KPvLi---~--~~~-~y-------~~G~nYlEiDvDI----~sfS~vAr~~l~~~ 271 (317)
|+.++||--+.+.. .=+++.+|+||+=- | .+. .- ...++-==|=|+| -+-..||+.++..+
T Consensus 21 IG~i~NGAGlaMaT--mD~i~~~Gg~pANFlDiGGga~~e~v~~al~iil~d~~Vk~IlINIfGGI~rcD~vA~GIv~A~ 98 (148)
T d1eucb1 21 IACFVNGAGLAMAT--CDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKAC 98 (148)
T ss_dssp EEEEESSHHHHHHH--HHHHHHTTCCBSEEEECCSSCCHHHHHHHHHHTTSCTTCCEEEEEEECSSSCHHHHHHHHHHHH
T ss_pred EEEEecCCccchhH--HHHHHHcCCCeeeEEecCCCCCHHHHHHHHHHHHCCCCccEEEEEeeEeehhHHHHHHHHHHHH
Confidence 89999998665544 45899999999842 2 111 11 2233311122332 35467888777777
Q ss_pred hhccceeEEeeeEeeecCCCCC
Q 021141 272 QDRFKLCKLDFGLTIQENKTEN 293 (317)
Q Consensus 272 ~~~~k~lvvD~gf~IEg~~~eE 293 (317)
...- +.+=+=+-++|..+||
T Consensus 99 ~e~~--~~iPiVVRL~Gtn~ee 118 (148)
T d1eucb1 99 RELE--LKVPLVVRLEGTNVHE 118 (148)
T ss_dssp HHHT--CCSCEEEEEESTTHHH
T ss_pred HhcC--CCccEEEEeccCChHH
Confidence 5421 1122333455554443
No 3
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.51 E-value=65 Score=25.19 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=21.4
Q ss_pred eeeeeCCCcccchhhHHHHHhhcCCeeee
Q 021141 209 LSRLVNGEDLHLSTTEKKILNTYNEKPVL 237 (317)
Q Consensus 209 Ip~Vvng~~i~l~~~~~~l~~avn~KPvL 237 (317)
|+.++||--+.+.. .=+++.+|+||+=
T Consensus 21 Ig~i~nGAGlamaT--mD~i~~~Gg~pAN 47 (150)
T d2nu7b1 21 IGCMVNGAGLAMGT--MDIVKLHGGEPAN 47 (150)
T ss_dssp EEEEESSHHHHHHH--HHHHHHTTCCBCE
T ss_pred EEEEEcCCccchhh--HHHHHHCCCCeeE
Confidence 88999998765544 3488999999983
No 4
>d2fsra1 d.108.1.1 (A:4-167) Probable acetyltranferase Atu2435 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=7.07 E-value=89 Score=22.14 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=18.0
Q ss_pred eeEeeecCCCCCCccceeceEEecc
Q 021141 282 FGLTIQENKTENLPENMLCCIRLNE 306 (317)
Q Consensus 282 ~gf~IEg~~~eELPE~lLG~vRl~~ 306 (317)
+||.+||..+.+-|+.+ .-|+|+
T Consensus 142 ~GF~~eg~~~~~~~~~~--~yr~~~ 164 (164)
T d2fsra1 142 IGGTLDPLAPRSDPEDL--VYRYHQ 164 (164)
T ss_dssp TTCEECTTSCCSSTTCE--EEEECC
T ss_pred CCCEEeeeEcccCCCce--EEeeCC
Confidence 59999999999888876 456553
No 5
>d2gw6a1 c.52.2.1 (A:2-123) tRNA-splicing endonuclease subunit Sen15 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.86 E-value=48 Score=25.42 Aligned_cols=66 Identities=17% Similarity=0.213 Sum_probs=40.5
Q ss_pred ccCCCccccCCCCCccceeeeeEeeeCcccccccccCCCccccCCCCCCcEEEEEEEcCCCcccccCCCCCCCceEEEEE
Q 021141 82 YLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLY 161 (317)
Q Consensus 82 Yl~dkkK~pa~~~~l~~lvgvDlf~s~~ki~hIa~~~~lp~~~~~~~~P~~fIVNlqvP~~p~~~f~~~~dg~g~slV~Y 161 (317)
||.-|+|...+. -++-|+-++.=.|-.++..+-.+..+|. .....|.-|++-|+=++ |-|.|
T Consensus 56 yL~gr~~~~~~~-qv~iP~p~~~sls~~~i~~~~~~~~~p~--~~~~~~~s~tLai~d~D---------------STIvY 117 (122)
T d2gw6a1 56 CLVGTEIEGEGL-QTVVPTPITASLSHNRIREILKASRKLQ--GDPDLPMSFTLAIVESD---------------STIVY 117 (122)
T ss_dssp EEEEESSTTCCC-CEEEEEETTCEEEHHHHHHHHHHHHHHT--TCSSCCCEEEEEEECTT---------------SCEEE
T ss_pred EEEcccccCCCc-cEEEeeccccccCHHHHHHHHHhccCCc--CCcCccceEEEEEEcCC---------------CeEEE
Confidence 666666655555 4788888877777777777644322222 12234556666677666 55778
Q ss_pred EeeC
Q 021141 162 FKLS 165 (317)
Q Consensus 162 f~~~ 165 (317)
|+++
T Consensus 118 Yrmt 121 (122)
T d2gw6a1 118 YKLT 121 (122)
T ss_dssp EEEE
T ss_pred EEcc
Confidence 8775
No 6
>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.82 E-value=47 Score=24.11 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=26.0
Q ss_pred HHHhhcCCeeeeec-------Cceeee---------cCCCeEEEEEeecC
Q 021141 226 KILNTYNEKPVLSR-------PQHEFY---------LGENYFEIDLDVHR 259 (317)
Q Consensus 226 ~l~~avn~KPvLi~-------~~~~y~---------~G~nYlEiDvDI~s 259 (317)
.|...++..||++- |.|.|. .|-.|-|+|||-+.
T Consensus 7 ~i~~~i~~~~VvvF~Kgt~~~p~Cp~c~~ak~lL~~~~i~~~~~~v~~~~ 56 (109)
T d1wika_ 7 GLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDE 56 (109)
T ss_dssp CHHHHHTTSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCH
T ss_pred HHHHHHhcCCEEEEeCCCCCCCCChHHHHHHHHHHhcCCCceEEEecccH
Confidence 47888999999983 457764 36789999998765
No 7
>d1unnc_ d.240.1.1 (C:) DNA polymerase IV {Escherichia coli [TaxId: 562]}
Probab=5.25 E-value=1.7e+02 Score=20.43 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=19.8
Q ss_pred CCccceeceEEecccccCccccCCC
Q 021141 293 NLPENMLCCIRLNEIDYSNYRQLGV 317 (317)
Q Consensus 293 ELPE~lLG~vRl~~iD~~~a~~l~~ 317 (317)
+-|=||||. ++.+++...+.||.|
T Consensus 86 ~~piRLlGV-~v~~l~~~~~~QlsL 109 (111)
T d1unnc_ 86 GRGVRLVGL-HVTLLDPQMERQLVL 109 (111)
T ss_dssp TCCEEEEEE-EEECCCCCCCCBCCC
T ss_pred CCCEeEEEE-EeecCCCCCcccCCC
Confidence 347799997 889999888999876
No 8
>d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.86 E-value=2.4e+02 Score=25.38 Aligned_cols=35 Identities=17% Similarity=0.485 Sum_probs=29.3
Q ss_pred eEeeecCCCC----CCccceeceEEecccccCccccCCC
Q 021141 283 GLTIQENKTE----NLPENMLCCIRLNEIDYSNYRQLGV 317 (317)
Q Consensus 283 gf~IEg~~~e----ELPE~lLG~vRl~~iD~~~a~~l~~ 317 (317)
=++||++.++ |+|+.++-=|-|.|.++.--..|||
T Consensus 223 PLviq~~g~~p~~feiP~elvlEV~i~HP~~~wf~~LgL 261 (418)
T d1om4a_ 223 PLLLQANGNDPELFQIPPELVLEVPIRHPKFDWFKDLGL 261 (418)
T ss_dssp CEEEECTTCCCEEECCCGGGCCEEECCCSSCTTGGGGCC
T ss_pred eEEEEECCCCCeeEeCCHHHeeeecccCCCChhHHhcCC
Confidence 3567765543 8999999999999999999999887
No 9
>d3e7ma1 d.174.1.1 (A:77-497) Nitric oxide (NO) synthase oxygenase domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.78 E-value=2.3e+02 Score=25.51 Aligned_cols=35 Identities=17% Similarity=0.523 Sum_probs=29.5
Q ss_pred eEeeecCCCC----CCccceeceEEecccccCccccCCC
Q 021141 283 GLTIQENKTE----NLPENMLCCIRLNEIDYSNYRQLGV 317 (317)
Q Consensus 283 gf~IEg~~~e----ELPE~lLG~vRl~~iD~~~a~~l~~ 317 (317)
=++||++.++ |+|+.++-=|-|.|.++.--..|||
T Consensus 224 PLv~q~~g~~P~~feiP~elvlEV~i~HP~~~wf~~LgL 262 (421)
T d3e7ma1 224 PLVLQADGQDPEVFEIPPDLVLEVTMEHPKYEWFQELGL 262 (421)
T ss_dssp CEEEECTTCCCEEECCCGGGCCEEECCCSSCGGGGGGCC
T ss_pred eEEEEeCCCCCeeeeCChhHeeEecccCCCChhHHhcCC
Confidence 3567776554 8999999999999999999988887
No 10
>d2qqra1 b.34.9.1 (A:897-955) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.55 E-value=1.3e+02 Score=20.10 Aligned_cols=21 Identities=33% Similarity=0.722 Sum_probs=16.9
Q ss_pred ceeeecC-------CCeEEEEEeecCch
Q 021141 241 QHEFYLG-------ENYFEIDLDVHRFS 261 (317)
Q Consensus 241 ~~~y~~G-------~nYlEiDvDI~sfS 261 (317)
..+||++ ..|.||..|=+|||
T Consensus 15 NgryY~c~V~~~~~qtfyeV~FdDgS~s 42 (59)
T d2qqra1 15 NGRFYQCEVVRLTTETFYEVNFDDGSFS 42 (59)
T ss_dssp TSSEEEEEEEEEEEEEEEEEEETTSCEE
T ss_pred CCcEEEEEEEEeeeEEEEEEEecCCCcc
Confidence 5567764 37999999999987
Done!