Query 021142
Match_columns 317
No_of_seqs 212 out of 724
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 13:20:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021142.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021142hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 5.9E-35 2E-39 228.5 5.5 75 159-233 1-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 8.2E-35 2.8E-39 228.6 3.9 75 159-233 4-78 (78)
3 2rpr_A Flywch-type zinc finger 52.1 6.7 0.00023 29.7 1.9 48 172-232 24-74 (87)
4 1qle_D Cytochrome AA3, ccytoch 19.1 31 0.0011 24.0 0.6 19 53-71 1-19 (43)
5 1cz6_A Protein (androctonin); 16.9 32 0.0011 21.5 0.2 8 194-201 16-23 (26)
6 1xiw_B T-cell surface glycopro 9.3 50 0.0017 24.9 -0.7 27 173-199 17-53 (79)
7 3ed7_A Tsase, TS, thymidylate 8.2 69 0.0024 30.3 -0.4 12 173-184 116-127 (295)
8 3kgb_A Thymidylate synthase 1/ 8.1 68 0.0023 30.3 -0.5 12 173-184 113-124 (294)
9 1ter_A Tertiapin; toxin; NMR { 6.9 86 0.003 19.6 -0.3 12 175-186 12-23 (26)
10 1odh_A MGCM1; transcription fa 6.3 3.1E+02 0.011 24.2 2.8 30 202-234 130-159 (174)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=5.9e-35 Score=228.46 Aligned_cols=75 Identities=57% Similarity=1.089 Sum_probs=72.4
Q ss_pred ceeEEEeccccCCCCCcchhhhcCcccccCCCCCCCccccccCCCccccchhhccCCCCEEEEEEeccCCCCCCC
Q 021142 159 PRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYEGQHSHPLPT 233 (317)
Q Consensus 159 ~rv~~~T~se~d~~~DGY~WRKYGQK~Ikgs~~PRsYYRCt~~~C~akKqVqrs~~Dp~~~~~TY~G~HnH~~p~ 233 (317)
.||++.|.+++++++|||+|||||||.|||+++||+|||||+.+|+|+|+|||+.+||.+++|||+|+|||+.|.
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 378999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=8.2e-35 Score=228.62 Aligned_cols=75 Identities=63% Similarity=1.148 Sum_probs=69.3
Q ss_pred ceeEEEeccccCCCCCcchhhhcCcccccCCCCCCCccccccCCCccccchhhccCCCCEEEEEEeccCCCCCCC
Q 021142 159 PRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYEGQHSHPLPT 233 (317)
Q Consensus 159 ~rv~~~T~se~d~~~DGY~WRKYGQK~Ikgs~~PRsYYRCt~~~C~akKqVqrs~~Dp~~~~~TY~G~HnH~~p~ 233 (317)
.++++.|.+++++++|||+|||||||.|||+++||+|||||+++|+|+|+|||+.+||.+++|||+|+|||+.|.
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 478899999999999999999999999999999999999999999999999999999999999999999999874
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=52.08 E-value=6.7 Score=29.74 Aligned_cols=48 Identities=17% Similarity=0.335 Sum_probs=29.8
Q ss_pred CCCcchhhhcCcccccCCCCCCCcccccc---CCCccccchhhccCCCCEEEEEEeccCCCCCC
Q 021142 172 LEDGYRWRKYGQKAVKNSPFPRSYYRCTT---QKCGVKKRVERSYEDPSIVITTYEGQHSHPLP 232 (317)
Q Consensus 172 ~~DGY~WRKYGQK~Ikgs~~PRsYYRCt~---~~C~akKqVqrs~~Dp~~~~~TY~G~HnH~~p 232 (317)
.-|||.-.+-- . ...+.|.+|+. .+|.|+=.... + . +.-.+.|||++.
T Consensus 24 v~~Gy~Y~~~~--~----~~~~~yWrC~~~~~~kCrARi~T~~---~-~---~~~~~~HnH~p~ 74 (87)
T 2rpr_A 24 VHESFLYRKEK--A----AGEKVYWMCRDQARLGCRSRAITQG---H-R---IMVMRSHCHQPD 74 (87)
T ss_dssp EETTEEEEEEE--E----CSSCEEEEEGGGTTSCCCCEEEEET---T-E---EEECSCCSSCCC
T ss_pred EECCEEEEeee--c----CCCcEEEEecCCCCCCCCEEEEEcC---C-C---EECCCCcCCCCc
Confidence 35888766421 1 12468999996 48999744332 2 1 234688999743
No 4
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=19.14 E-value=31 Score=23.99 Aligned_cols=19 Identities=42% Similarity=0.620 Sum_probs=14.9
Q ss_pred hhhhccCCChhhHHHHhcc
Q 021142 53 TDCFHGLMDYNSLEKAFTG 71 (317)
Q Consensus 53 ~d~l~g~~d~~~l~~~~~~ 71 (317)
|||-+|.|||..-.+.+++
T Consensus 1 ~~~~hG~MD~~~hE~Ty~g 19 (43)
T 1qle_D 1 TDHKHGEMDIRHQQATFAG 19 (43)
T ss_dssp CCCCTTCSCCHHHHHHHHH
T ss_pred CCCCCCCCChHHHHHHHHH
Confidence 5788999999877776643
No 5
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=16.86 E-value=32 Score=21.53 Aligned_cols=8 Identities=50% Similarity=1.431 Sum_probs=6.4
Q ss_pred CccccccC
Q 021142 194 SYYRCTTQ 201 (317)
Q Consensus 194 sYYRCt~~ 201 (317)
.||+||+.
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 59999973
No 6
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=9.34 E-value=50 Score=24.88 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=17.9
Q ss_pred CCcchhhhcCccc--------cc--CCCCCCCccccc
Q 021142 173 EDGYRWRKYGQKA--------VK--NSPFPRSYYRCT 199 (317)
Q Consensus 173 ~DGY~WRKYGQK~--------Ik--gs~~PRsYYRCt 199 (317)
..++.|-|-|..- +. ...-||++|.|.
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~ 53 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCN 53 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEec
Confidence 4668888877541 22 334499999993
No 7
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=8.15 E-value=69 Score=30.31 Aligned_cols=12 Identities=33% Similarity=1.129 Sum_probs=9.5
Q ss_pred CCcchhhhcCcc
Q 021142 173 EDGYRWRKYGQK 184 (317)
Q Consensus 173 ~DGY~WRKYGQK 184 (317)
.=|++||.+|.+
T Consensus 116 vYG~QwR~~~~~ 127 (295)
T 3ed7_A 116 VYGFQWRHFGAE 127 (295)
T ss_dssp CTHHHHHHBTCC
T ss_pred chhhhhhccCCc
Confidence 458999999865
No 8
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=8.14 E-value=68 Score=30.29 Aligned_cols=12 Identities=33% Similarity=1.149 Sum_probs=9.2
Q ss_pred CCcchhhhcCcc
Q 021142 173 EDGYRWRKYGQK 184 (317)
Q Consensus 173 ~DGY~WRKYGQK 184 (317)
.=|++||.+|.+
T Consensus 113 vYG~QwR~~~~~ 124 (294)
T 3kgb_A 113 IYGFQWRHFGAR 124 (294)
T ss_dssp CHHHHHHSBTCC
T ss_pred ccchhhhcCCCc
Confidence 457899999864
No 9
>1ter_A Tertiapin; toxin; NMR {Apis mellifera} SCOP: j.20.1.1
Probab=6.91 E-value=86 Score=19.61 Aligned_cols=12 Identities=33% Similarity=0.742 Sum_probs=8.2
Q ss_pred cchhhhcCcccc
Q 021142 175 GYRWRKYGQKAV 186 (317)
Q Consensus 175 GY~WRKYGQK~I 186 (317)
...|+|.|.|..
T Consensus 12 hmcwkkcgkk~~ 23 (26)
T 1ter_A 12 HMCWKKCGKKXX 23 (26)
T ss_dssp HHHHHHHHCC--
T ss_pred hHHHHHhCcccc
Confidence 457999998864
No 10
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=6.32 E-value=3.1e+02 Score=24.22 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=19.6
Q ss_pred CCccccchhhccCCCCEEEEEEeccCCCCCCCC
Q 021142 202 KCGVKKRVERSYEDPSIVITTYEGQHSHPLPTT 234 (317)
Q Consensus 202 ~C~akKqVqrs~~Dp~~~~~TY~G~HnH~~p~~ 234 (317)
|-+|+- .-|- |+..+...-+|.|+|+.|.+
T Consensus 130 GyPVTh-FWrh--~~~~ifFqaKG~HDHpRPe~ 159 (174)
T 1odh_A 130 GFPVTN-FWRH--DGRFIFFQSKGEHDHPRPET 159 (174)
T ss_dssp TBCCEE-EEEE--CSSBEEEEEECCCCSCCCCC
T ss_pred CCcceE-EEEE--cCCEEEEecccccCCCCCCC
Confidence 445533 4443 34455667799999999885
Done!