Query 021144
Match_columns 317
No_of_seqs 168 out of 1109
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:56:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021144.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021144hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02489 homocysteine S-methyl 100.0 1.9E-74 4E-79 551.1 35.9 307 7-315 7-313 (335)
2 PRK09485 mmuM homocysteine met 100.0 6.9E-70 1.5E-74 514.2 34.0 279 11-311 3-281 (304)
3 COG2040 MHT1 Homocysteine/sele 100.0 3E-70 6.4E-75 498.2 26.7 267 20-311 8-275 (300)
4 KOG1579 Homocysteine S-methylt 100.0 8.5E-70 1.8E-74 501.8 30.0 284 9-311 6-291 (317)
5 PF02574 S-methyl_trans: Homoc 100.0 9.1E-66 2E-70 486.3 7.8 268 22-311 1-282 (305)
6 PRK07534 methionine synthase I 100.0 4.4E-62 9.6E-67 465.7 32.7 266 8-311 1-272 (336)
7 COG0646 MetH Methionine syntha 100.0 3.3E-60 7.2E-65 434.2 29.0 279 9-316 5-292 (311)
8 PRK09490 metH B12-dependent me 100.0 7E-60 1.5E-64 504.6 32.6 283 8-315 7-310 (1229)
9 PRK08645 bifunctional homocyst 100.0 3E-58 6.5E-63 470.7 32.0 259 12-311 4-264 (612)
10 TIGR02082 metH 5-methyltetrahy 100.0 1.4E-57 3E-62 488.1 32.1 272 20-315 3-294 (1178)
11 cd06557 KPHMT-like Ketopantoat 95.6 0.31 6.6E-06 45.3 13.0 114 134-273 74-198 (254)
12 TIGR00683 nanA N-acetylneurami 95.1 0.81 1.8E-05 43.1 14.5 105 161-278 18-138 (290)
13 PRK00311 panB 3-methyl-2-oxobu 95.1 0.52 1.1E-05 44.0 12.8 114 134-273 77-201 (264)
14 cd00408 DHDPS-like Dihydrodipi 94.8 1.2 2.7E-05 41.3 14.9 105 161-278 15-133 (281)
15 cd00377 ICL_PEPM Members of th 94.3 0.76 1.6E-05 42.3 11.9 40 172-216 164-203 (243)
16 COG0329 DapA Dihydrodipicolina 94.3 1.3 2.9E-05 42.0 13.9 106 161-279 22-141 (299)
17 cd02810 DHOD_DHPD_FMN Dihydroo 94.1 0.61 1.3E-05 43.5 11.2 80 209-310 98-189 (289)
18 PRK03620 5-dehydro-4-deoxygluc 94.1 1.1 2.3E-05 42.5 12.9 104 161-278 25-142 (303)
19 TIGR03249 KdgD 5-dehydro-4-deo 94.1 2.3 5E-05 40.1 15.0 104 161-278 23-140 (296)
20 PF00701 DHDPS: Dihydrodipicol 93.8 1.2 2.7E-05 41.6 12.6 104 161-277 19-136 (289)
21 COG0159 TrpA Tryptophan syntha 93.5 6.7 0.00014 36.7 16.5 86 176-273 117-210 (265)
22 cd00945 Aldolase_Class_I Class 93.4 3.6 7.7E-05 35.4 14.0 96 170-279 15-124 (201)
23 cd00952 CHBPH_aldolase Trans-o 93.3 2.2 4.7E-05 40.6 13.4 105 161-278 26-145 (309)
24 cd00950 DHDPS Dihydrodipicolin 93.1 0.91 2E-05 42.3 10.3 104 161-277 18-135 (284)
25 TIGR01037 pyrD_sub1_fam dihydr 93.0 1.9 4E-05 40.6 12.4 62 209-276 90-165 (300)
26 cd00954 NAL N-Acetylneuraminic 93.0 3.9 8.5E-05 38.3 14.5 105 161-278 18-138 (288)
27 TIGR00222 panB 3-methyl-2-oxob 92.9 2.7 5.8E-05 39.3 12.9 94 169-272 94-199 (263)
28 TIGR02317 prpB methylisocitrat 92.9 2.4 5.3E-05 40.0 12.9 44 170-218 163-206 (285)
29 PRK11320 prpB 2-methylisocitra 92.8 1.7 3.6E-05 41.3 11.6 43 170-217 168-210 (292)
30 cd00951 KDGDH 5-dehydro-4-deox 92.7 3.3 7.1E-05 38.9 13.5 104 161-279 18-136 (289)
31 PRK05458 guanosine 5'-monophos 92.6 1.7 3.6E-05 41.9 11.5 93 171-278 99-209 (326)
32 COG0646 MetH Methionine syntha 92.5 6.8 0.00015 37.2 15.0 150 62-263 150-309 (311)
33 TIGR02320 PEP_mutase phosphoen 92.4 2.9 6.2E-05 39.5 12.6 44 171-214 172-216 (285)
34 TIGR00674 dapA dihydrodipicoli 92.3 1.4 3E-05 41.3 10.5 104 161-277 16-133 (285)
35 PRK04147 N-acetylneuraminate l 92.2 2.2 4.7E-05 40.2 11.7 104 161-277 21-139 (293)
36 PRK05286 dihydroorotate dehydr 92.1 3.9 8.5E-05 39.5 13.5 97 198-311 126-239 (344)
37 PRK05692 hydroxymethylglutaryl 91.9 8.9 0.00019 36.2 15.4 130 65-239 89-223 (287)
38 TIGR02319 CPEP_Pphonmut carbox 91.6 9.2 0.0002 36.3 15.1 44 170-218 167-210 (294)
39 PRK08645 bifunctional homocyst 91.6 12 0.00026 39.2 17.3 156 54-265 120-287 (612)
40 PRK06843 inosine 5-monophospha 91.4 4.1 8.9E-05 40.4 13.0 81 132-248 140-221 (404)
41 TIGR02313 HpaI-NOT-DapA 2,4-di 91.4 3.2 6.9E-05 39.2 11.8 105 161-278 18-137 (294)
42 PLN02274 inosine-5'-monophosph 91.2 5.1 0.00011 40.9 13.8 81 132-248 235-316 (505)
43 TIGR00737 nifR3_yhdG putative 91.2 2 4.3E-05 40.9 10.4 93 179-278 29-141 (319)
44 cd06556 ICL_KPHMT Members of t 91.0 3.8 8.3E-05 37.7 11.6 72 134-215 126-197 (240)
45 PLN02489 homocysteine S-methyl 90.9 16 0.00034 35.3 17.6 153 55-265 163-333 (335)
46 PRK09485 mmuM homocysteine met 90.9 15 0.00032 34.9 17.5 155 53-263 134-302 (304)
47 PRK15063 isocitrate lyase; Pro 90.9 4.7 0.0001 40.1 12.7 34 171-205 268-302 (428)
48 cd04722 TIM_phosphate_binding 90.7 2.6 5.7E-05 35.7 9.8 103 168-277 12-123 (200)
49 cd02940 DHPD_FMN Dihydropyrimi 90.6 1.3 2.8E-05 41.9 8.4 62 209-276 99-176 (299)
50 TIGR00612 ispG_gcpE 1-hydroxy- 90.3 9 0.0002 37.0 13.6 119 169-307 35-157 (346)
51 PF03437 BtpA: BtpA family; I 90.2 12 0.00026 34.8 14.1 37 155-193 18-54 (254)
52 cd04738 DHOD_2_like Dihydrooro 90.0 7 0.00015 37.5 13.0 86 209-311 128-230 (327)
53 PLN02417 dihydrodipicolinate s 89.9 3 6.4E-05 39.1 10.2 102 161-277 19-134 (280)
54 PRK03170 dihydrodipicolinate s 89.7 2.9 6.3E-05 39.2 10.0 104 161-277 19-136 (292)
55 PRK01130 N-acetylmannosamine-6 89.7 2.4 5.1E-05 38.1 9.0 91 172-278 79-181 (221)
56 PRK07565 dihydroorotate dehydr 89.6 1.7 3.6E-05 41.8 8.4 74 193-274 86-171 (334)
57 cd00953 KDG_aldolase KDG (2-ke 89.1 19 0.00042 33.6 15.1 100 161-277 17-130 (279)
58 PLN02746 hydroxymethylglutaryl 89.1 17 0.00038 35.3 14.9 130 65-239 131-265 (347)
59 TIGR02082 metH 5-methyltetrahy 89.1 19 0.0004 40.7 16.9 161 55-266 144-315 (1178)
60 COG0826 Collagenase and relate 89.0 4 8.7E-05 39.7 10.5 133 64-252 22-175 (347)
61 PLN02424 ketopantoate hydroxym 88.7 17 0.00036 35.2 14.2 115 133-272 96-221 (332)
62 TIGR00262 trpA tryptophan synt 88.5 21 0.00044 33.1 18.2 89 174-273 108-203 (256)
63 cd04732 HisA HisA. Phosphorib 88.5 6.2 0.00013 35.4 10.9 101 173-278 87-198 (234)
64 PRK12677 xylose isomerase; Pro 88.3 25 0.00055 34.6 15.7 87 161-250 146-245 (384)
65 TIGR00007 phosphoribosylformim 88.2 7.8 0.00017 34.7 11.3 101 173-278 86-197 (230)
66 cd04729 NanE N-acetylmannosami 88.2 4.8 0.0001 36.0 9.9 93 171-279 82-186 (219)
67 PRK08673 3-deoxy-7-phosphohept 88.1 27 0.00058 33.9 16.6 190 49-308 101-327 (335)
68 cd04740 DHOD_1B_like Dihydroor 88.0 6.5 0.00014 36.8 11.1 61 209-276 89-162 (296)
69 cd00377 ICL_PEPM Members of th 88.0 13 0.00028 34.1 12.8 100 173-279 89-207 (243)
70 PRK09490 metH B12-dependent me 87.8 32 0.0007 39.0 17.7 159 55-266 160-331 (1229)
71 PRK02506 dihydroorotate dehydr 87.8 3.3 7.1E-05 39.5 9.0 60 209-274 92-163 (310)
72 cd06557 KPHMT-like Ketopantoat 87.7 4.4 9.6E-05 37.6 9.5 45 162-213 153-197 (254)
73 PF01729 QRPTase_C: Quinolinat 87.7 2.2 4.9E-05 37.1 7.1 65 173-250 92-156 (169)
74 PRK02412 aroD 3-dehydroquinate 87.6 12 0.00025 34.7 12.3 100 173-277 100-206 (253)
75 PF00490 ALAD: Delta-aminolevu 87.5 28 0.0006 33.5 15.8 227 54-315 56-313 (324)
76 smart00633 Glyco_10 Glycosyl h 87.5 14 0.00031 33.8 12.8 51 168-220 136-194 (254)
77 PRK07259 dihydroorotate dehydr 87.4 26 0.00056 32.9 15.2 98 170-278 106-242 (301)
78 PF13714 PEP_mutase: Phosphoen 87.2 7.5 0.00016 35.7 10.6 47 165-216 152-198 (238)
79 cd06556 ICL_KPHMT Members of t 87.1 23 0.00049 32.6 13.7 93 173-274 94-197 (240)
80 TIGR01463 mtaA_cmuA methyltran 87.0 20 0.00044 34.1 14.0 81 174-264 248-336 (340)
81 PRK13587 1-(5-phosphoribosyl)- 87.0 10 0.00022 34.6 11.4 97 174-274 91-198 (234)
82 PRK10415 tRNA-dihydrouridine s 87.0 8.6 0.00019 36.8 11.3 93 179-278 31-143 (321)
83 TIGR00742 yjbN tRNA dihydrouri 86.7 8.9 0.00019 36.8 11.2 100 169-278 15-133 (318)
84 COG2224 AceA Isocitrate lyase 86.5 5.8 0.00013 39.1 9.8 29 181-209 283-312 (433)
85 PRK05567 inosine 5'-monophosph 86.5 7.4 0.00016 39.5 11.2 66 171-248 230-296 (486)
86 cd00381 IMPDH IMPDH: The catal 86.4 15 0.00033 35.2 12.7 66 171-248 96-162 (325)
87 TIGR02635 RhaI_grampos L-rhamn 86.4 7.7 0.00017 38.2 10.8 106 149-266 139-269 (378)
88 COG5016 Pyruvate/oxaloacetate 86.3 10 0.00022 37.6 11.4 106 164-276 97-207 (472)
89 PRK10550 tRNA-dihydrouridine s 86.2 13 0.00028 35.5 12.1 100 170-278 16-143 (312)
90 cd00958 DhnA Class I fructose- 86.2 13 0.00029 33.4 11.7 95 173-274 81-185 (235)
91 PRK13523 NADPH dehydrogenase N 85.9 33 0.00071 33.1 14.8 131 164-310 37-240 (337)
92 cd07937 DRE_TIM_PC_TC_5S Pyruv 85.9 17 0.00038 33.9 12.6 98 174-275 97-199 (275)
93 PRK00366 ispG 4-hydroxy-3-meth 85.9 25 0.00053 34.3 13.6 126 169-314 43-177 (360)
94 PRK07259 dihydroorotate dehydr 85.8 15 0.00032 34.5 12.2 62 209-277 91-166 (301)
95 PRK13397 3-deoxy-7-phosphohept 85.7 20 0.00044 33.2 12.6 36 49-84 23-60 (250)
96 PRK13384 delta-aminolevulinic 85.5 35 0.00076 32.7 17.1 224 54-315 60-312 (322)
97 PRK07534 methionine synthase I 85.4 37 0.00079 32.8 17.5 116 132-265 171-295 (336)
98 cd02801 DUS_like_FMN Dihydrour 85.3 11 0.00024 33.6 10.6 91 181-278 23-133 (231)
99 PF02574 S-methyl_trans: Homoc 85.1 9.3 0.0002 36.0 10.5 162 53-264 129-304 (305)
100 TIGR02990 ectoine_eutA ectoine 84.8 6.7 0.00014 36.1 9.0 100 174-277 112-214 (239)
101 PRK07896 nicotinate-nucleotide 84.7 5.5 0.00012 37.8 8.5 64 174-250 212-275 (289)
102 PLN02591 tryptophan synthase 84.6 34 0.00073 31.7 18.9 89 174-273 99-194 (250)
103 PF01487 DHquinase_I: Type I 3 84.2 9.9 0.00021 34.1 9.8 103 169-277 76-183 (224)
104 PRK05848 nicotinate-nucleotide 84.1 5.8 0.00013 37.3 8.4 65 173-250 194-258 (273)
105 cd07938 DRE_TIM_HMGL 3-hydroxy 83.9 37 0.00081 31.7 14.7 65 169-239 150-217 (274)
106 COG0821 gcpE 1-hydroxy-2-methy 83.5 26 0.00057 33.9 12.5 120 169-307 37-159 (361)
107 COG5309 Exo-beta-1,3-glucanase 83.5 16 0.00035 34.3 10.8 43 148-193 243-285 (305)
108 COG2513 PrpB PEP phosphonomuta 83.5 1.8 3.8E-05 40.9 4.6 77 171-260 169-245 (289)
109 PRK13125 trpA tryptophan synth 83.1 36 0.00078 31.1 13.2 93 174-278 94-193 (244)
110 PRK00748 1-(5-phosphoribosyl)- 82.7 17 0.00036 32.6 10.7 99 174-278 89-198 (233)
111 PF00682 HMGL-like: HMGL-like 82.7 16 0.00035 32.8 10.7 98 174-277 73-190 (237)
112 PRK12581 oxaloacetate decarbox 82.7 34 0.00073 34.7 13.7 65 167-238 162-229 (468)
113 PLN02617 imidazole glycerol ph 82.5 18 0.0004 37.2 12.0 107 172-280 338-494 (538)
114 COG1038 PycA Pyruvate carboxyl 82.5 19 0.00041 38.9 11.9 94 177-274 639-743 (1149)
115 TIGR01496 DHPS dihydropteroate 82.3 42 0.0009 31.1 14.4 41 41-81 9-49 (257)
116 cd04740 DHOD_1B_like Dihydroor 82.1 24 0.00051 33.0 11.8 99 169-278 103-239 (296)
117 cd04739 DHOD_like Dihydroorota 81.9 12 0.00025 36.0 9.8 60 209-275 99-170 (325)
118 cd07943 DRE_TIM_HOA 4-hydroxy- 81.8 15 0.00033 33.8 10.3 97 174-276 91-193 (263)
119 PRK12581 oxaloacetate decarbox 81.5 22 0.00048 36.0 11.9 99 174-276 111-214 (468)
120 PF00478 IMPDH: IMP dehydrogen 81.4 6 0.00013 38.5 7.6 60 132-215 95-155 (352)
121 PRK08385 nicotinate-nucleotide 81.4 14 0.00031 34.8 9.9 68 172-250 193-260 (278)
122 cd00945 Aldolase_Class_I Class 81.3 33 0.00071 29.2 17.0 24 53-76 11-34 (201)
123 COG0113 HemB Delta-aminolevuli 81.2 52 0.0011 31.5 15.6 204 55-289 61-294 (330)
124 cd07947 DRE_TIM_Re_CS Clostrid 81.0 49 0.0011 31.1 14.8 130 65-239 84-227 (279)
125 PRK14042 pyruvate carboxylase 80.9 18 0.0004 37.7 11.4 99 174-276 102-205 (596)
126 PRK07428 nicotinate-nucleotide 80.5 11 0.00024 35.7 8.9 65 173-250 208-272 (288)
127 PRK02048 4-hydroxy-3-methylbut 80.0 9.6 0.00021 39.6 8.8 50 170-220 43-95 (611)
128 TIGR01235 pyruv_carbox pyruvat 80.0 31 0.00068 38.8 13.5 102 174-276 631-740 (1143)
129 PF00682 HMGL-like: HMGL-like 80.0 45 0.00097 29.9 16.8 144 52-246 64-210 (237)
130 cd02911 arch_FMN Archeal FMN-b 79.8 39 0.00085 30.7 12.1 92 174-278 41-149 (233)
131 PLN02925 4-hydroxy-3-methylbut 79.6 8.9 0.00019 40.5 8.5 51 169-220 111-164 (733)
132 PRK14040 oxaloacetate decarbox 79.6 29 0.00062 36.3 12.3 99 174-276 103-206 (593)
133 PRK12331 oxaloacetate decarbox 79.6 33 0.00072 34.5 12.4 98 174-275 102-204 (448)
134 TIGR01302 IMP_dehydrog inosine 79.5 25 0.00055 35.2 11.7 67 170-248 225-292 (450)
135 PRK12331 oxaloacetate decarbox 79.3 66 0.0014 32.4 14.4 64 168-238 154-220 (448)
136 cd02932 OYE_YqiM_FMN Old yello 79.2 60 0.0013 31.0 14.6 61 241-310 166-254 (336)
137 PF02548 Pantoate_transf: Keto 79.2 56 0.0012 30.6 13.8 114 133-272 77-201 (261)
138 KOG2335 tRNA-dihydrouridine sy 79.0 3.6 7.8E-05 39.9 5.1 63 208-278 72-151 (358)
139 PF00701 DHDPS: Dihydrodipicol 79.0 55 0.0012 30.4 17.0 140 53-251 20-163 (289)
140 TIGR02660 nifV_homocitr homoci 79.0 26 0.00057 34.1 11.3 97 174-276 78-193 (365)
141 cd04741 DHOD_1A_like Dihydroor 78.9 11 0.00024 35.6 8.4 62 209-277 91-166 (294)
142 PRK13398 3-deoxy-7-phosphohept 78.8 54 0.0012 30.6 12.9 29 50-78 36-64 (266)
143 cd00502 DHQase_I Type I 3-dehy 78.2 34 0.00074 30.7 11.1 100 171-277 79-183 (225)
144 cd00384 ALAD_PBGS Porphobilino 77.9 67 0.0014 30.8 16.3 224 54-315 50-303 (314)
145 TIGR01093 aroD 3-dehydroquinat 77.9 44 0.00096 30.1 11.8 95 178-277 89-188 (228)
146 PRK06552 keto-hydroxyglutarate 77.8 31 0.00068 31.1 10.7 81 173-279 80-164 (213)
147 PRK06252 methylcobalamin:coenz 77.5 66 0.0014 30.5 14.3 83 173-265 245-335 (339)
148 PRK12330 oxaloacetate decarbox 77.4 37 0.00079 34.8 12.1 99 174-276 103-208 (499)
149 cd02803 OYE_like_FMN_family Ol 77.4 65 0.0014 30.4 16.9 112 159-273 129-286 (327)
150 PRK13111 trpA tryptophan synth 77.4 41 0.00088 31.3 11.6 89 174-273 110-205 (258)
151 PRK14041 oxaloacetate decarbox 77.2 71 0.0015 32.4 14.0 65 167-238 152-219 (467)
152 PTZ00314 inosine-5'-monophosph 76.9 56 0.0012 33.3 13.3 64 171-246 243-307 (495)
153 cd04726 KGPDC_HPS 3-Keto-L-gul 76.6 50 0.0011 28.6 11.8 89 173-274 69-164 (202)
154 cd08210 RLP_RrRLP Ribulose bis 76.6 40 0.00088 33.0 11.8 65 132-216 125-200 (364)
155 COG0434 SgcQ Predicted TIM-bar 76.4 5.5 0.00012 36.7 5.2 39 149-192 20-58 (263)
156 PF00290 Trp_syntA: Tryptophan 76.2 67 0.0015 29.9 16.5 89 174-273 108-203 (259)
157 PRK06096 molybdenum transport 76.1 14 0.0003 35.0 8.1 65 173-250 201-265 (284)
158 cd02930 DCR_FMN 2,4-dienoyl-Co 76.1 77 0.0017 30.6 20.2 112 160-273 126-281 (353)
159 TIGR01919 hisA-trpF 1-(5-phosp 76.0 41 0.00088 30.9 11.1 98 173-274 88-199 (243)
160 PRK06052 5-methyltetrahydropte 76.0 41 0.0009 32.7 11.4 168 56-261 39-238 (344)
161 TIGR01302 IMP_dehydrog inosine 75.9 62 0.0013 32.5 13.2 27 53-80 222-248 (450)
162 PRK09283 delta-aminolevulinic 75.8 78 0.0017 30.5 16.1 224 54-315 58-311 (323)
163 PF01208 URO-D: Uroporphyrinog 75.8 71 0.0015 30.3 13.2 83 173-264 248-341 (343)
164 PRK13585 1-(5-phosphoribosyl)- 75.7 36 0.00077 30.7 10.6 100 174-278 91-201 (241)
165 PF00977 His_biosynth: Histidi 75.2 9 0.00019 34.7 6.5 98 173-273 87-196 (229)
166 PRK08318 dihydropyrimidine deh 75.1 14 0.0003 36.6 8.3 61 209-275 99-175 (420)
167 TIGR00259 thylakoid_BtpA membr 75.1 25 0.00053 32.8 9.4 36 155-192 17-52 (257)
168 cd07939 DRE_TIM_NifV Streptomy 74.9 47 0.001 30.5 11.3 97 174-276 75-190 (259)
169 cd07944 DRE_TIM_HOA_like 4-hyd 74.8 52 0.0011 30.5 11.6 94 174-276 88-191 (266)
170 PRK14041 oxaloacetate decarbox 74.8 35 0.00075 34.6 11.0 99 174-276 101-204 (467)
171 PRK00311 panB 3-methyl-2-oxobu 74.7 5.7 0.00012 37.2 5.1 45 162-213 156-200 (264)
172 PRK15452 putative protease; Pr 74.7 26 0.00056 35.3 10.1 73 172-251 14-98 (443)
173 PRK05437 isopentenyl pyrophosp 74.0 60 0.0013 31.5 12.2 105 167-276 76-194 (352)
174 PRK00865 glutamate racemase; P 73.9 50 0.0011 30.5 11.2 53 156-213 43-95 (261)
175 PRK12999 pyruvate carboxylase; 73.4 49 0.0011 37.4 12.8 86 135-238 669-757 (1146)
176 TIGR00313 cobQ cobyric acid sy 73.0 32 0.0007 34.8 10.4 89 180-276 121-223 (475)
177 TIGR00736 nifR3_rel_arch TIM-b 72.7 56 0.0012 29.9 11.0 58 209-278 67-144 (231)
178 CHL00200 trpA tryptophan synth 72.5 61 0.0013 30.2 11.4 89 174-273 112-207 (263)
179 cd04823 ALAD_PBGS_aspartate_ri 72.4 94 0.002 29.9 16.1 225 54-314 53-307 (320)
180 PRK11613 folP dihydropteroate 72.4 88 0.0019 29.5 14.6 144 133-311 14-177 (282)
181 TIGR01303 IMP_DH_rel_1 IMP deh 72.3 21 0.00045 36.2 8.9 67 169-247 225-292 (475)
182 PLN02446 (5-phosphoribosyl)-5- 72.2 49 0.0011 31.0 10.6 103 172-276 95-215 (262)
183 PRK09282 pyruvate carboxylase 72.1 1.2E+02 0.0026 31.8 14.5 65 168-239 154-221 (592)
184 cd04723 HisA_HisF Phosphoribos 72.0 51 0.0011 29.9 10.6 98 173-274 92-195 (233)
185 cd03307 Mta_CmuA_like MtaA_Cmu 72.0 91 0.002 29.5 13.0 81 174-263 237-324 (326)
186 PLN02495 oxidoreductase, actin 71.4 25 0.00054 34.7 8.9 38 37-78 17-55 (385)
187 TIGR03572 WbuZ glycosyl amidat 71.4 71 0.0015 28.6 11.4 95 177-278 92-205 (232)
188 PF01207 Dus: Dihydrouridine s 71.3 16 0.00035 34.7 7.4 112 179-311 19-152 (309)
189 PRK01033 imidazole glycerol ph 71.2 57 0.0012 30.0 10.9 98 174-278 89-204 (258)
190 TIGR03128 RuMP_HxlA 3-hexulose 70.5 36 0.00079 29.8 9.1 94 173-279 68-167 (206)
191 PRK15452 putative protease; Pr 70.2 66 0.0014 32.4 11.8 109 51-219 10-120 (443)
192 TIGR00735 hisF imidazoleglycer 70.1 82 0.0018 28.8 11.7 97 175-274 90-205 (254)
193 cd07939 DRE_TIM_NifV Streptomy 70.0 90 0.0019 28.6 15.5 127 63-239 77-206 (259)
194 PRK14024 phosphoribosyl isomer 69.7 54 0.0012 29.8 10.3 96 173-278 89-198 (241)
195 TIGR01108 oadA oxaloacetate de 69.6 1.5E+02 0.0032 31.0 15.9 64 168-238 149-215 (582)
196 cd03312 CIMS_N_terminal_like C 69.6 1.1E+02 0.0025 29.7 13.2 57 163-219 177-241 (360)
197 TIGR03151 enACPred_II putative 69.6 62 0.0013 30.8 11.0 88 170-278 76-169 (307)
198 COG5564 Predicted TIM-barrel e 69.5 42 0.00091 30.8 9.1 84 21-109 123-218 (276)
199 cd03174 DRE_TIM_metallolyase D 69.4 78 0.0017 28.6 11.4 96 173-275 79-197 (265)
200 PRK11858 aksA trans-homoaconit 69.0 67 0.0015 31.4 11.4 97 174-276 81-196 (378)
201 PRK09282 pyruvate carboxylase 68.9 60 0.0013 33.9 11.5 96 174-276 102-205 (592)
202 TIGR00222 panB 3-methyl-2-oxob 68.8 11 0.00025 35.2 5.6 45 162-213 155-199 (263)
203 PRK11858 aksA trans-homoaconit 68.6 1.2E+02 0.0026 29.6 14.4 122 65-237 85-210 (378)
204 PRK14042 pyruvate carboxylase 68.5 1E+02 0.0022 32.3 13.0 64 168-238 154-220 (596)
205 PRK14040 oxaloacetate decarbox 68.2 71 0.0015 33.4 11.9 66 167-239 154-222 (593)
206 PF09370 TIM-br_sig_trns: TIM- 68.1 12 0.00025 35.1 5.5 100 24-172 120-236 (268)
207 cd04824 eu_ALAD_PBGS_cysteine_ 68.1 1.2E+02 0.0025 29.2 16.3 227 54-315 50-309 (320)
208 TIGR01108 oadA oxaloacetate de 68.0 91 0.002 32.6 12.6 99 174-276 97-200 (582)
209 PRK05692 hydroxymethylglutaryl 67.9 76 0.0016 29.9 11.1 100 175-276 86-207 (287)
210 PRK11815 tRNA-dihydrouridine s 67.7 35 0.00076 32.8 9.0 113 181-311 34-165 (333)
211 PRK13575 3-dehydroquinate dehy 67.7 1E+02 0.0022 28.3 11.9 109 161-278 80-198 (238)
212 PRK12344 putative alpha-isopro 67.6 1.4E+02 0.003 30.7 13.8 116 62-221 92-211 (524)
213 COG0106 HisA Phosphoribosylfor 67.6 74 0.0016 29.4 10.5 95 173-273 89-196 (241)
214 PLN02520 bifunctional 3-dehydr 67.5 68 0.0015 32.9 11.5 97 173-276 102-200 (529)
215 PRK06852 aldolase; Validated 67.4 1.1E+02 0.0023 29.4 11.9 100 173-280 64-181 (304)
216 PRK06106 nicotinate-nucleotide 67.4 26 0.00057 33.1 7.8 61 174-250 207-267 (281)
217 TIGR01235 pyruv_carbox pyruvat 67.3 1.1E+02 0.0024 34.6 13.8 65 167-238 688-755 (1143)
218 TIGR01334 modD putative molybd 67.2 30 0.00066 32.6 8.2 65 173-250 200-264 (277)
219 cd03465 URO-D_like The URO-D _ 67.0 1.1E+02 0.0024 28.6 15.1 54 173-235 235-288 (330)
220 PRK12999 pyruvate carboxylase; 66.4 63 0.0014 36.5 11.8 98 174-276 633-742 (1146)
221 PF04551 GcpE: GcpE protein; 66.4 58 0.0013 31.8 10.0 118 171-307 34-166 (359)
222 PLN00124 succinyl-CoA ligase [ 66.3 36 0.00079 34.0 9.0 68 160-239 327-398 (422)
223 PRK12330 oxaloacetate decarbox 66.0 75 0.0016 32.5 11.3 65 168-238 155-223 (499)
224 cd01568 QPRTase_NadC Quinolina 65.4 27 0.0006 32.5 7.6 58 177-248 197-254 (269)
225 PRK06278 cobyrinic acid a,c-di 65.0 40 0.00087 34.2 9.1 95 177-276 313-418 (476)
226 cd00954 NAL N-Acetylneuraminic 64.9 1.2E+02 0.0026 28.2 18.4 142 53-252 19-165 (288)
227 TIGR02320 PEP_mutase phosphoen 64.5 1.3E+02 0.0028 28.4 12.9 101 173-276 97-219 (285)
228 COG0796 MurI Glutamate racemas 64.5 81 0.0018 29.6 10.3 91 156-265 43-136 (269)
229 cd08205 RuBisCO_IV_RLP Ribulos 64.4 58 0.0013 31.9 9.9 144 53-250 144-289 (367)
230 TIGR02151 IPP_isom_2 isopenten 64.4 79 0.0017 30.4 10.7 106 166-276 68-187 (333)
231 cd07940 DRE_TIM_IPMS 2-isoprop 64.2 1.2E+02 0.0026 27.9 15.4 67 169-239 144-213 (268)
232 PRK09016 quinolinate phosphori 64.0 32 0.00069 32.8 7.7 63 172-250 219-281 (296)
233 cd01572 QPRTase Quinolinate ph 63.8 32 0.00069 32.2 7.6 61 174-250 195-255 (268)
234 PRK14114 1-(5-phosphoribosyl)- 63.6 74 0.0016 29.2 9.9 95 173-274 87-194 (241)
235 cd07938 DRE_TIM_HMGL 3-hydroxy 63.2 1.1E+02 0.0024 28.5 11.2 101 174-276 79-201 (274)
236 PRK05742 nicotinate-nucleotide 62.9 43 0.00093 31.5 8.3 62 173-250 201-262 (277)
237 cd04735 OYE_like_4_FMN Old yel 62.8 1.4E+02 0.003 28.9 12.1 116 160-278 133-292 (353)
238 cd04724 Tryptophan_synthase_al 62.6 1.2E+02 0.0027 27.5 12.7 90 173-273 96-192 (242)
239 PF00478 IMPDH: IMP dehydrogen 62.6 1.3E+02 0.0029 29.3 11.8 64 173-249 162-240 (352)
240 PLN02746 hydroxymethylglutaryl 62.6 1.1E+02 0.0023 29.9 11.2 100 174-275 127-248 (347)
241 cd04727 pdxS PdxS is a subunit 62.5 88 0.0019 29.6 10.2 92 171-279 77-205 (283)
242 PRK09250 fructose-bisphosphate 62.3 1.2E+02 0.0025 29.7 11.2 125 171-311 94-231 (348)
243 PF01408 GFO_IDH_MocA: Oxidore 62.2 35 0.00077 26.7 6.8 45 169-216 74-120 (120)
244 PRK00694 4-hydroxy-3-methylbut 61.9 1.6E+02 0.0035 30.7 12.6 126 170-314 47-204 (606)
245 cd04724 Tryptophan_synthase_al 60.9 1.2E+02 0.0026 27.6 10.8 19 170-188 16-34 (242)
246 COG0107 HisF Imidazoleglycerol 60.7 1.3E+02 0.0028 27.8 10.6 102 176-280 91-211 (256)
247 cd00958 DhnA Class I fructose- 60.7 49 0.0011 29.7 8.2 22 54-75 142-163 (235)
248 cd03308 CmuA_CmuC_like CmuA_Cm 60.6 1.7E+02 0.0037 28.5 13.5 81 173-263 282-376 (378)
249 PRK05286 dihydroorotate dehydr 60.6 1.6E+02 0.0035 28.3 14.8 73 169-248 158-244 (344)
250 PF01320 Colicin_Pyocin: Colic 60.1 7.5 0.00016 30.1 2.2 47 252-311 29-80 (85)
251 TIGR02321 Pphn_pyruv_hyd phosp 59.8 17 0.00036 34.5 5.1 41 170-213 168-209 (290)
252 PRK04208 rbcL ribulose bisopho 59.7 2E+02 0.0044 29.2 13.0 103 161-278 173-291 (468)
253 cd01573 modD_like ModD; Quinol 59.6 51 0.0011 30.9 8.2 57 177-246 199-255 (272)
254 PRK06498 isocitrate lyase; Pro 59.6 21 0.00046 36.2 5.9 33 179-211 343-376 (531)
255 TIGR00315 cdhB CO dehydrogenas 59.4 99 0.0022 26.7 9.4 119 176-308 23-161 (162)
256 cd02801 DUS_like_FMN Dihydrour 59.4 1.3E+02 0.0027 26.6 12.8 100 171-278 70-191 (231)
257 TIGR03249 KdgD 5-dehydro-4-deo 58.9 1.6E+02 0.0034 27.6 17.9 142 53-260 24-175 (296)
258 cd07948 DRE_TIM_HCS Saccharomy 58.7 1.5E+02 0.0033 27.4 15.2 61 172-239 145-208 (262)
259 TIGR03855 NAD_NadX aspartate d 58.5 31 0.00067 31.5 6.4 45 168-215 48-95 (229)
260 PF07302 AroM: AroM protein; 58.4 32 0.0007 31.3 6.4 42 171-216 168-209 (221)
261 cd08205 RuBisCO_IV_RLP Ribulos 58.3 37 0.00081 33.2 7.4 77 161-251 143-232 (367)
262 cd04738 DHOD_2_like Dihydrooro 57.5 1.8E+02 0.0039 27.8 14.1 78 166-250 146-238 (327)
263 PRK13396 3-deoxy-7-phosphohept 57.5 1.9E+02 0.0042 28.2 12.8 191 49-308 109-336 (352)
264 PRK15063 isocitrate lyase; Pro 57.4 2.2E+02 0.0047 28.7 14.5 128 173-312 166-341 (428)
265 TIGR02631 xylA_Arthro xylose i 57.3 2E+02 0.0043 28.3 16.1 85 162-249 148-245 (382)
266 COG0710 AroD 3-dehydroquinate 57.2 1.6E+02 0.0034 27.1 10.9 97 170-277 80-185 (231)
267 COG0280 Pta Phosphotransacetyl 57.1 1.9E+02 0.0041 28.0 13.8 185 49-277 42-270 (327)
268 PRK08005 epimerase; Validated 57.0 1.4E+02 0.0031 26.8 10.3 80 173-265 73-156 (210)
269 TIGR03217 4OH_2_O_val_ald 4-hy 57.0 1.8E+02 0.0038 28.1 11.7 94 174-276 93-196 (333)
270 PRK07028 bifunctional hexulose 56.8 1.4E+02 0.0031 29.6 11.4 91 173-275 73-169 (430)
271 TIGR01163 rpe ribulose-phospha 56.5 1.3E+02 0.0029 26.0 11.4 50 169-219 12-66 (210)
272 cd07940 DRE_TIM_IPMS 2-isoprop 56.4 1.2E+02 0.0025 28.0 10.1 78 193-276 113-197 (268)
273 cd02810 DHOD_DHPD_FMN Dihydroo 56.0 1.7E+02 0.0037 27.0 11.4 72 170-248 113-195 (289)
274 cd02932 OYE_YqiM_FMN Old yello 55.9 1.9E+02 0.0041 27.6 18.1 113 159-273 142-295 (336)
275 TIGR02090 LEU1_arch isopropylm 55.8 2E+02 0.0044 27.9 14.8 63 169-238 142-207 (363)
276 cd00408 DHDPS-like Dihydrodipi 55.7 1.7E+02 0.0036 26.9 18.3 150 53-261 16-171 (281)
277 PRK08195 4-hyroxy-2-oxovalerat 55.7 1.9E+02 0.0042 27.8 11.7 93 174-275 94-196 (337)
278 PTZ00344 pyridoxal kinase; Pro 55.6 90 0.0019 29.2 9.3 79 158-237 54-136 (296)
279 cd03311 CIMS_C_terminal_like C 55.4 1.9E+02 0.0041 27.4 13.0 88 163-252 150-251 (332)
280 PF06187 DUF993: Protein of un 55.4 65 0.0014 31.3 8.1 91 88-217 86-186 (382)
281 cd04734 OYE_like_3_FMN Old yel 55.3 2E+02 0.0043 27.7 19.0 113 159-273 129-290 (343)
282 TIGR02090 LEU1_arch isopropylm 54.8 1.4E+02 0.003 29.1 10.7 97 174-276 77-192 (363)
283 PF03102 NeuB: NeuB family; I 54.7 1.1E+02 0.0023 28.3 9.3 94 167-273 55-177 (241)
284 COG3457 Predicted amino acid r 54.6 1.4E+02 0.0031 28.8 10.2 75 181-261 93-182 (353)
285 cd07948 DRE_TIM_HCS Saccharomy 54.5 1.8E+02 0.0039 26.9 11.1 94 174-276 77-192 (262)
286 cd00952 CHBPH_aldolase Trans-o 54.4 2E+02 0.0042 27.3 18.6 141 53-252 27-172 (309)
287 PRK06559 nicotinate-nucleotide 54.1 61 0.0013 30.8 7.8 63 172-250 208-270 (290)
288 PRK10605 N-ethylmaleimide redu 54.0 2.1E+02 0.0045 27.9 11.7 115 159-274 147-298 (362)
289 COG1831 Predicted metal-depend 53.5 2E+02 0.0043 27.1 12.5 140 42-216 41-192 (285)
290 PRK09389 (R)-citramalate synth 53.4 2.6E+02 0.0057 28.4 14.8 64 168-238 143-209 (488)
291 TIGR03326 rubisco_III ribulose 53.4 2.2E+02 0.0047 28.5 11.8 113 133-277 144-273 (412)
292 PRK06978 nicotinate-nucleotide 53.3 82 0.0018 30.0 8.5 63 172-250 216-278 (294)
293 TIGR00078 nadC nicotinate-nucl 53.0 66 0.0014 30.0 7.8 60 173-248 190-249 (265)
294 TIGR02129 hisA_euk phosphoribo 52.9 1.5E+02 0.0033 27.5 10.0 103 173-278 89-211 (253)
295 cd04747 OYE_like_5_FMN Old yel 52.6 2.3E+02 0.005 27.6 13.0 114 159-273 132-285 (361)
296 PRK05826 pyruvate kinase; Prov 52.6 1.7E+02 0.0037 29.7 11.1 51 161-216 171-222 (465)
297 TIGR02311 HpaI 2,4-dihydroxyhe 52.4 1.4E+02 0.0031 27.3 9.9 79 173-264 25-107 (249)
298 cd06822 PLPDE_III_YBL036c_euk 52.4 83 0.0018 28.6 8.2 77 174-253 81-164 (227)
299 PLN02417 dihydrodipicolinate s 52.3 2E+02 0.0043 26.7 13.3 47 53-104 20-66 (280)
300 cd02931 ER_like_FMN Enoate red 52.2 2.4E+02 0.0052 27.6 15.2 167 132-316 13-270 (382)
301 PF02729 OTCace_N: Aspartate/o 52.2 1.1E+02 0.0024 25.7 8.3 82 183-279 43-124 (142)
302 cd08207 RLP_NonPhot Ribulose b 52.1 2.3E+02 0.0051 28.2 11.8 112 133-277 143-269 (406)
303 cd04747 OYE_like_5_FMN Old yel 52.1 2.4E+02 0.0051 27.6 14.9 82 161-249 232-328 (361)
304 PRK07807 inosine 5-monophospha 51.9 2.4E+02 0.0051 28.7 12.1 26 55-80 226-251 (479)
305 TIGR01769 GGGP geranylgeranylg 51.8 43 0.00093 30.1 6.1 43 171-214 14-58 (205)
306 PF02515 CoA_transf_3: CoA-tra 51.7 58 0.0013 28.5 6.9 40 50-94 4-43 (191)
307 PRK10558 alpha-dehydro-beta-de 51.7 1.3E+02 0.0027 27.9 9.4 78 173-263 32-113 (256)
308 PRK00784 cobyric acid synthase 51.7 1.2E+02 0.0026 30.7 10.1 104 161-277 110-227 (488)
309 cd07945 DRE_TIM_CMS Leptospira 51.6 2.1E+02 0.0045 26.8 15.0 65 169-239 148-215 (280)
310 TIGR00970 leuA_yeast 2-isoprop 51.6 3E+02 0.0065 28.6 13.4 133 68-238 115-260 (564)
311 PF01136 Peptidase_U32: Peptid 51.5 1.6E+02 0.0035 26.2 9.9 43 170-219 4-46 (233)
312 COG0859 RfaF ADP-heptose:LPS h 51.2 2.2E+02 0.0048 27.0 11.7 86 168-278 195-281 (334)
313 cd02070 corrinoid_protein_B12- 51.2 1.3E+02 0.0028 26.4 9.1 72 184-267 84-161 (201)
314 TIGR00683 nanA N-acetylneurami 51.1 2.1E+02 0.0046 26.7 18.0 148 53-260 19-175 (290)
315 cd00331 IGPS Indole-3-glycerol 51.0 1.8E+02 0.0038 25.7 11.2 78 173-266 86-168 (217)
316 cd02933 OYE_like_FMN Old yello 50.9 2.4E+02 0.0051 27.2 12.8 113 160-274 141-291 (338)
317 PRK03170 dihydrodipicolinate s 50.9 2.1E+02 0.0045 26.6 18.2 142 53-253 20-165 (292)
318 PRK06543 nicotinate-nucleotide 50.8 65 0.0014 30.4 7.4 62 173-250 205-266 (281)
319 cd07941 DRE_TIM_LeuA3 Desulfob 50.5 2.1E+02 0.0046 26.5 14.9 66 168-239 151-219 (273)
320 TIGR03239 GarL 2-dehydro-3-deo 50.2 1.3E+02 0.0029 27.6 9.3 78 173-263 25-106 (249)
321 TIGR00736 nifR3_rel_arch TIM-b 50.1 2E+02 0.0044 26.2 11.6 79 191-279 118-200 (231)
322 cd02803 OYE_like_FMN_family Ol 50.0 85 0.0018 29.6 8.3 28 55-82 33-60 (327)
323 PLN02495 oxidoreductase, actin 49.6 1.1E+02 0.0024 30.2 9.1 72 170-250 129-216 (385)
324 cd02809 alpha_hydroxyacid_oxid 49.5 1.5E+02 0.0033 27.8 9.8 90 171-274 84-178 (299)
325 cd00452 KDPG_aldolase KDPG and 49.2 1.7E+02 0.0036 25.4 9.4 84 172-278 67-151 (190)
326 cd00465 URO-D_CIMS_like The UR 48.8 2.2E+02 0.0048 26.3 14.3 68 173-251 213-285 (306)
327 TIGR01371 met_syn_B12ind 5-met 48.8 2.6E+02 0.0057 30.1 12.4 57 163-219 173-237 (750)
328 cd03174 DRE_TIM_metallolyase D 48.7 2E+02 0.0044 25.8 15.9 64 170-239 148-214 (265)
329 PF07745 Glyco_hydro_53: Glyco 48.7 2.6E+02 0.0056 27.0 16.5 236 26-308 5-278 (332)
330 PRK13523 NADPH dehydrogenase N 48.7 2.6E+02 0.0056 27.0 18.8 111 160-273 131-280 (337)
331 TIGR00036 dapB dihydrodipicoli 48.4 53 0.0012 30.4 6.4 48 169-218 80-127 (266)
332 TIGR01306 GMP_reduct_2 guanosi 48.4 2E+02 0.0044 27.7 10.4 96 171-278 48-146 (321)
333 PF02548 Pantoate_transf: Keto 47.8 1.4E+02 0.003 28.0 8.9 129 173-314 28-179 (261)
334 PRK04302 triosephosphate isome 47.8 1.8E+02 0.0039 26.0 9.6 45 173-217 126-181 (223)
335 PLN02424 ketopantoate hydroxym 47.8 81 0.0017 30.5 7.5 70 133-213 151-221 (332)
336 KOG1184 Thiamine pyrophosphate 47.7 1.6E+02 0.0035 30.3 9.8 86 198-286 152-258 (561)
337 PRK08255 salicylyl-CoA 5-hydro 47.2 3.3E+02 0.0071 29.3 12.9 112 160-274 540-693 (765)
338 COG0673 MviM Predicted dehydro 47.1 41 0.00088 31.6 5.5 45 169-216 79-125 (342)
339 cd00452 KDPG_aldolase KDPG and 47.0 96 0.0021 27.0 7.5 59 178-250 114-172 (190)
340 cd06824 PLPDE_III_Yggs_like Py 46.8 1.1E+02 0.0024 27.3 8.1 65 186-251 95-162 (224)
341 TIGR02317 prpB methylisocitrat 46.7 2.6E+02 0.0056 26.4 14.7 96 173-276 93-205 (285)
342 TIGR02660 nifV_homocitr homoci 46.5 2.8E+02 0.0062 26.8 15.7 63 169-238 143-208 (365)
343 COG0279 GmhA Phosphoheptose is 46.2 77 0.0017 27.8 6.4 91 131-224 41-150 (176)
344 COG0036 Rpe Pentose-5-phosphat 45.9 1.7E+02 0.0037 26.7 8.9 94 173-279 76-178 (220)
345 PRK10128 2-keto-3-deoxy-L-rham 45.9 1.9E+02 0.0042 26.9 9.7 78 173-263 31-112 (267)
346 cd08212 RuBisCO_large_I Ribulo 45.7 3.4E+02 0.0073 27.5 12.0 118 133-278 145-275 (450)
347 COG0159 TrpA Tryptophan syntha 45.5 2.6E+02 0.0057 26.2 11.0 104 170-278 33-159 (265)
348 TIGR03586 PseI pseudaminic aci 45.5 2.3E+02 0.0049 27.4 10.4 129 168-307 77-251 (327)
349 TIGR01036 pyrD_sub2 dihydrooro 45.4 1E+02 0.0022 29.7 8.0 84 188-274 114-216 (335)
350 PF08267 Meth_synt_1: Cobalami 45.4 2.1E+02 0.0046 27.4 10.0 87 163-259 176-270 (310)
351 cd00429 RPE Ribulose-5-phospha 45.3 2E+02 0.0044 24.8 10.3 49 170-219 14-67 (211)
352 cd08209 RLP_DK-MTP-1-P-enolase 45.1 3.2E+02 0.007 27.1 11.7 114 132-277 123-252 (391)
353 cd08206 RuBisCO_large_I_II_III 45.0 3.3E+02 0.0072 27.2 12.2 112 132-277 131-262 (414)
354 cd00384 ALAD_PBGS Porphobilino 45.0 15 0.00033 35.1 2.1 25 51-75 281-305 (314)
355 KOG2949 Ketopantoate hydroxyme 45.0 2.3E+02 0.005 26.2 9.5 91 169-263 118-219 (306)
356 PLN03228 methylthioalkylmalate 45.0 3.6E+02 0.0079 27.7 15.1 66 169-238 240-309 (503)
357 PRK04128 1-(5-phosphoribosyl)- 45.0 2.1E+02 0.0046 25.8 9.7 71 174-251 88-164 (228)
358 cd04823 ALAD_PBGS_aspartate_ri 44.8 15 0.00032 35.2 2.1 25 51-75 286-310 (320)
359 PRK13384 delta-aminolevulinic 44.5 16 0.00034 35.0 2.2 25 51-75 290-314 (322)
360 KOG2794 Delta-aminolevulinic a 44.5 15 0.00032 34.5 2.0 25 51-75 303-327 (340)
361 PRK10481 hypothetical protein; 44.5 1.3E+02 0.0028 27.4 8.1 106 161-272 70-210 (224)
362 PRK06739 pyruvate kinase; Vali 44.5 3.1E+02 0.0068 26.8 12.3 51 161-216 163-214 (352)
363 PRK13586 1-(5-phosphoribosyl)- 44.4 2.5E+02 0.0053 25.5 11.2 93 173-274 87-194 (232)
364 COG1646 Predicted phosphate-bi 44.3 96 0.0021 28.6 7.1 63 213-279 16-81 (240)
365 PRK08091 ribulose-phosphate 3- 44.3 2.5E+02 0.0055 25.6 10.6 96 173-279 83-188 (228)
366 TIGR01182 eda Entner-Doudoroff 44.2 2.4E+02 0.0051 25.3 11.2 82 173-280 72-158 (204)
367 TIGR00379 cobB cobyrinic acid 44.1 2.2E+02 0.0047 28.6 10.4 105 162-278 63-179 (449)
368 PTZ00066 pyruvate kinase; Prov 44.1 3.6E+02 0.0077 27.8 11.9 75 135-216 184-258 (513)
369 cd04824 eu_ALAD_PBGS_cysteine_ 44.0 16 0.00034 35.0 2.1 25 51-75 287-311 (320)
370 PRK04452 acetyl-CoA decarbonyl 44.0 3E+02 0.0066 26.5 11.4 38 179-217 87-132 (319)
371 PF03481 SUA5: Putative GTP-bi 43.8 32 0.00068 28.0 3.7 44 162-205 79-122 (125)
372 COG0167 PyrD Dihydroorotate de 43.8 3E+02 0.0065 26.4 12.3 40 37-78 8-48 (310)
373 cd04730 NPD_like 2-Nitropropan 43.7 2.3E+02 0.005 25.0 10.1 87 172-279 71-165 (236)
374 TIGR01361 DAHP_synth_Bsub phos 43.6 1.1E+02 0.0023 28.5 7.6 30 49-78 33-62 (260)
375 PF03932 CutC: CutC family; I 43.5 2.4E+02 0.0053 25.2 11.5 171 51-281 7-181 (201)
376 PRK00208 thiG thiazole synthas 43.5 2.8E+02 0.006 25.8 16.6 28 51-81 20-47 (250)
377 cd04734 OYE_like_3_FMN Old yel 43.4 3.1E+02 0.0067 26.4 14.9 22 55-76 134-162 (343)
378 PRK05581 ribulose-phosphate 3- 43.4 2.3E+02 0.0049 24.8 10.4 50 170-220 18-72 (220)
379 cd04733 OYE_like_2_FMN Old yel 43.3 96 0.0021 29.7 7.5 49 254-311 200-250 (338)
380 cd04733 OYE_like_2_FMN Old yel 43.3 3E+02 0.0065 26.2 19.3 113 159-273 137-297 (338)
381 PRK00278 trpC indole-3-glycero 43.3 1.7E+02 0.0037 27.0 8.9 63 173-250 125-188 (260)
382 cd06818 PLPDE_III_cryptic_DSD 43.3 1.9E+02 0.0041 28.1 9.7 74 173-251 88-167 (382)
383 TIGR00693 thiE thiamine-phosph 43.2 2.1E+02 0.0047 24.5 10.1 13 175-187 110-122 (196)
384 PRK00748 1-(5-phosphoribosyl)- 43.2 2.4E+02 0.0051 25.0 11.1 77 174-263 36-120 (233)
385 PRK09140 2-dehydro-3-deoxy-6-p 43.1 1.8E+02 0.0039 25.9 8.7 81 173-279 75-160 (206)
386 PLN02716 nicotinate-nucleotide 43.0 1.2E+02 0.0026 29.1 7.9 63 173-250 215-291 (308)
387 PRK09722 allulose-6-phosphate 43.0 2.6E+02 0.0057 25.5 10.5 95 173-279 74-178 (229)
388 KOG0369 Pyruvate carboxylase [ 42.7 2E+02 0.0043 30.8 9.8 88 153-248 703-793 (1176)
389 PF13607 Succ_CoA_lig: Succiny 42.5 1.8E+02 0.0038 24.3 8.1 73 197-277 15-90 (138)
390 PRK12595 bifunctional 3-deoxy- 42.4 1.1E+02 0.0023 30.0 7.7 97 168-273 169-292 (360)
391 TIGR01306 GMP_reduct_2 guanosi 42.2 3.2E+02 0.007 26.3 12.5 95 171-279 96-207 (321)
392 cd00950 DHDPS Dihydrodipicolin 42.1 2.8E+02 0.0061 25.5 17.8 141 53-252 19-163 (284)
393 TIGR02313 HpaI-NOT-DapA 2,4-di 42.1 3E+02 0.0064 25.8 18.4 111 53-215 19-133 (294)
394 PRK08610 fructose-bisphosphate 42.0 1.5E+02 0.0033 28.0 8.4 27 224-252 84-110 (286)
395 smart00633 Glyco_10 Glycosyl h 41.9 2.7E+02 0.0059 25.3 12.1 106 162-273 51-187 (254)
396 PF02310 B12-binding: B12 bind 41.8 74 0.0016 24.9 5.6 18 176-193 23-40 (121)
397 TIGR01346 isocit_lyase isocitr 41.8 42 0.00092 34.4 4.9 36 174-210 373-409 (527)
398 COG0329 DapA Dihydrodipicolina 41.5 3.1E+02 0.0067 25.9 19.3 197 53-308 23-227 (299)
399 PLN02892 isocitrate lyase 41.5 45 0.00097 34.5 5.0 31 180-210 399-430 (570)
400 TIGR01859 fruc_bis_ald_ fructo 41.4 3.1E+02 0.0066 25.8 11.2 103 173-280 89-212 (282)
401 TIGR01740 pyrF orotidine 5'-ph 41.1 2E+02 0.0043 25.5 8.8 34 174-207 69-102 (213)
402 COG0157 NadC Nicotinate-nucleo 40.9 2.3E+02 0.0049 26.8 9.2 63 173-249 200-262 (280)
403 cd04728 ThiG Thiazole synthase 40.8 3E+02 0.0066 25.5 17.0 28 51-81 19-46 (248)
404 cd06843 PLPDE_III_PvsE_like Ty 40.4 2.2E+02 0.0047 27.5 9.6 74 174-250 84-171 (377)
405 PRK01261 aroD 3-dehydroquinate 40.4 1.8E+02 0.004 26.5 8.5 105 162-278 31-158 (229)
406 PRK13111 trpA tryptophan synth 40.3 3E+02 0.0066 25.4 12.5 102 170-277 28-153 (258)
407 cd00953 KDG_aldolase KDG (2-ke 40.3 3.1E+02 0.0066 25.5 17.7 45 53-103 18-63 (279)
408 PF00490 ALAD: Delta-aminolevu 40.1 19 0.00041 34.6 2.0 25 51-75 291-315 (324)
409 PRK07709 fructose-bisphosphate 40.0 2E+02 0.0044 27.1 8.9 27 224-252 84-110 (285)
410 TIGR01037 pyrD_sub1_fam dihydr 40.0 3.1E+02 0.0068 25.5 16.9 69 171-248 106-188 (300)
411 PRK11579 putative oxidoreducta 39.9 97 0.0021 29.5 7.0 47 169-218 76-124 (346)
412 PF13714 PEP_mutase: Phosphoen 39.8 1.9E+02 0.004 26.5 8.5 98 173-276 90-199 (238)
413 PTZ00300 pyruvate kinase; Prov 39.8 3.9E+02 0.0085 27.0 11.4 76 133-216 120-195 (454)
414 TIGR01949 AroFGH_arch predicte 39.7 3E+02 0.0065 25.2 12.5 94 173-273 95-197 (258)
415 COG0269 SgbH 3-hexulose-6-phos 39.5 2.5E+02 0.0054 25.5 8.9 92 161-266 13-105 (217)
416 cd02067 B12-binding B12 bindin 39.5 1.9E+02 0.0041 22.8 8.2 41 226-267 35-78 (119)
417 cd02940 DHPD_FMN Dihydropyrimi 39.1 3.3E+02 0.0072 25.5 12.1 68 170-246 115-197 (299)
418 TIGR03569 NeuB_NnaB N-acetylne 39.0 1.4E+02 0.0031 28.8 7.9 122 174-307 102-252 (329)
419 PRK13210 putative L-xylulose 5 38.7 3E+02 0.0065 24.9 10.9 72 162-237 127-200 (284)
420 PRK05222 5-methyltetrahydropte 38.6 5E+02 0.011 28.1 12.6 57 163-219 179-243 (758)
421 cd02811 IDI-2_FMN Isopentenyl- 38.6 1.6E+02 0.0035 28.1 8.2 75 198-276 101-186 (326)
422 cd00423 Pterin_binding Pterin 38.6 3.1E+02 0.0068 25.1 13.9 91 172-279 28-131 (258)
423 TIGR00737 nifR3_yhdG putative 38.5 3.5E+02 0.0075 25.6 12.6 106 162-278 73-200 (319)
424 PLN02475 5-methyltetrahydropte 38.0 3.4E+02 0.0074 29.4 11.2 58 163-220 181-246 (766)
425 cd07941 DRE_TIM_LeuA3 Desulfob 37.4 3.4E+02 0.0073 25.1 11.6 99 174-276 84-203 (273)
426 PRK09389 (R)-citramalate synth 37.4 3.2E+02 0.0068 27.9 10.4 97 174-276 79-194 (488)
427 COG0325 Predicted enzyme with 37.3 2.9E+02 0.0063 25.3 9.1 81 184-265 94-182 (228)
428 PRK09283 delta-aminolevulinic 37.3 23 0.00051 33.9 2.2 25 51-75 289-313 (323)
429 PRK14805 ornithine carbamoyltr 37.3 2E+02 0.0043 27.3 8.5 71 191-271 48-118 (302)
430 cd01129 PulE-GspE PulE/GspE Th 37.2 1.9E+02 0.0042 26.7 8.3 57 170-238 138-194 (264)
431 PRK14057 epimerase; Provisiona 37.1 3.5E+02 0.0076 25.2 10.7 98 173-279 90-202 (254)
432 COG5016 Pyruvate/oxaloacetate 37.0 81 0.0018 31.5 5.8 75 167-250 155-232 (472)
433 PRK14046 malate--CoA ligase su 36.8 2.3E+02 0.005 27.9 9.1 28 55-82 179-206 (392)
434 CHL00040 rbcL ribulose-1,5-bis 36.7 1.9E+02 0.004 29.5 8.5 115 133-278 167-298 (475)
435 PLN02461 Probable pyruvate kin 36.6 4.9E+02 0.011 26.8 11.6 52 161-216 191-242 (511)
436 COG0413 PanB Ketopantoate hydr 36.6 3.6E+02 0.0079 25.3 12.5 113 133-271 76-199 (268)
437 TIGR00973 leuA_bact 2-isopropy 36.4 4.8E+02 0.01 26.6 15.1 66 169-238 147-216 (494)
438 PRK08318 dihydropyrimidine deh 36.1 4.3E+02 0.0094 26.0 13.6 28 53-80 111-138 (420)
439 PRK04284 ornithine carbamoyltr 36.0 2.1E+02 0.0046 27.5 8.6 75 191-278 55-129 (332)
440 PRK07094 biotin synthase; Prov 35.7 2E+02 0.0044 27.0 8.4 72 172-251 130-217 (323)
441 TIGR03849 arch_ComA phosphosul 35.7 2.2E+02 0.0049 26.2 8.2 119 180-312 23-149 (237)
442 COG0826 Collagenase and relate 35.6 2.7E+02 0.0058 27.1 9.2 71 173-249 18-99 (347)
443 PF00290 Trp_syntA: Tryptophan 35.5 1.8E+02 0.0038 27.2 7.6 45 224-277 51-98 (259)
444 PRK00856 pyrB aspartate carbam 35.5 2.6E+02 0.0056 26.6 9.0 82 184-279 50-131 (305)
445 TIGR03217 4OH_2_O_val_ald 4-hy 35.5 4.1E+02 0.0089 25.5 15.9 32 147-185 10-41 (333)
446 PRK00090 bioD dithiobiotin syn 35.4 3.1E+02 0.0066 24.0 9.5 101 162-276 89-201 (222)
447 PRK05398 formyl-coenzyme A tra 35.4 1.5E+02 0.0032 29.5 7.6 40 50-94 73-112 (416)
448 PLN02321 2-isopropylmalate syn 35.3 5.7E+02 0.012 27.1 15.6 53 169-221 241-297 (632)
449 PF00549 Ligase_CoA: CoA-ligas 35.2 61 0.0013 27.7 4.2 76 224-313 55-139 (153)
450 PTZ00170 D-ribulose-5-phosphat 35.2 2.4E+02 0.0053 25.4 8.4 54 174-237 81-134 (228)
451 PRK01060 endonuclease IV; Prov 35.1 3.5E+02 0.0075 24.6 10.7 71 164-237 120-201 (281)
452 PLN03231 putative alpha-galact 35.1 1.3E+02 0.0028 29.5 6.9 54 162-217 157-215 (357)
453 PRK08227 autoinducer 2 aldolas 35.1 3.8E+02 0.0083 25.0 12.2 112 177-313 103-222 (264)
454 COG0113 HemB Delta-aminolevuli 35.0 27 0.00058 33.4 2.1 25 51-75 294-318 (330)
455 PRK05222 5-methyltetrahydropte 34.9 4.3E+02 0.0092 28.6 11.4 21 172-192 651-671 (758)
456 TIGR00284 dihydropteroate synt 34.9 5.2E+02 0.011 26.5 12.0 92 168-276 165-259 (499)
457 COG1646 Predicted phosphate-bi 34.9 92 0.002 28.7 5.5 45 170-215 30-76 (240)
458 PLN02591 tryptophan synthase 34.9 3.7E+02 0.008 24.8 10.5 102 170-278 18-143 (250)
459 PRK10206 putative oxidoreducta 34.8 1.4E+02 0.003 28.6 7.2 46 169-217 76-123 (344)
460 PF07905 PucR: Purine cataboli 34.8 1.1E+02 0.0024 24.6 5.6 48 229-277 60-108 (123)
461 TIGR01417 PTS_I_fam phosphoeno 34.7 2E+02 0.0044 29.8 8.7 39 167-205 366-407 (565)
462 TIGR00067 glut_race glutamate 34.7 69 0.0015 29.5 4.8 35 156-191 36-73 (251)
463 COG1679 Predicted aconitase [G 34.6 1E+02 0.0022 30.4 6.0 55 161-217 271-328 (403)
464 PRK13302 putative L-aspartate 34.3 92 0.002 28.9 5.7 43 169-214 79-121 (271)
465 COG0787 Alr Alanine racemase [ 34.2 4.6E+02 0.0099 25.7 11.8 35 173-214 46-81 (360)
466 PRK04180 pyridoxal biosynthesi 34.1 4.2E+02 0.0091 25.2 10.4 41 170-214 85-126 (293)
467 PRK08883 ribulose-phosphate 3- 34.0 3.5E+02 0.0077 24.3 10.3 66 173-251 73-140 (220)
468 PRK02083 imidazole glycerol ph 33.8 3.6E+02 0.0079 24.4 11.6 95 177-278 92-205 (253)
469 COG2040 MHT1 Homocysteine/sele 33.6 4.3E+02 0.0094 25.2 15.4 116 132-265 174-298 (300)
470 cd04731 HisF The cyclase subun 33.5 3.5E+02 0.0077 24.2 11.3 96 177-279 89-202 (243)
471 cd08213 RuBisCO_large_III Ribu 33.5 3.4E+02 0.0074 27.1 9.7 113 133-277 131-260 (412)
472 PRK00915 2-isopropylmalate syn 33.3 5.4E+02 0.012 26.3 17.1 66 168-237 149-218 (513)
473 cd00381 IMPDH IMPDH: The catal 33.3 2.5E+02 0.0053 26.9 8.5 63 173-248 148-225 (325)
474 cd06810 PLPDE_III_ODC_DapDC_li 32.9 4.4E+02 0.0094 25.1 11.7 72 175-250 85-169 (368)
475 PRK07807 inosine 5-monophospha 32.9 5.4E+02 0.012 26.2 11.5 67 169-247 227-294 (479)
476 PRK14077 pnk inorganic polypho 32.7 1.9E+02 0.0041 27.3 7.5 90 165-265 22-119 (287)
477 PLN02235 ATP citrate (pro-S)-l 32.7 4.2E+02 0.0092 26.6 10.2 73 157-238 304-389 (423)
478 PRK15447 putative protease; Pr 32.6 3.1E+02 0.0066 25.9 9.0 46 165-216 16-68 (301)
479 KOG0538 Glycolate oxidase [Ene 32.5 2.1E+02 0.0046 27.6 7.6 83 174-265 237-331 (363)
480 cd06836 PLPDE_III_ODC_DapDC_li 32.4 4.5E+02 0.0098 25.4 10.4 40 174-217 86-126 (379)
481 PRK06015 keto-hydroxyglutarate 32.3 3.7E+02 0.008 24.0 11.6 82 173-280 68-154 (201)
482 cd08210 RLP_RrRLP Ribulose bis 32.3 3.6E+02 0.0078 26.4 9.6 24 52-75 138-161 (364)
483 KOG1579 Homocysteine S-methylt 32.2 4.7E+02 0.01 25.2 11.1 114 131-265 189-314 (317)
484 TIGR01769 GGGP geranylgeranylg 32.2 1.1E+02 0.0024 27.4 5.6 51 228-279 11-64 (205)
485 PRK00915 2-isopropylmalate syn 32.1 5.7E+02 0.012 26.1 11.4 98 173-276 84-204 (513)
486 COG1038 PycA Pyruvate carboxyl 32.0 97 0.0021 33.8 5.7 65 167-238 693-760 (1149)
487 PRK05458 guanosine 5'-monophos 31.8 4.5E+02 0.0097 25.4 10.0 91 172-273 52-145 (326)
488 KOG2323 Pyruvate kinase [Carbo 31.7 1.1E+02 0.0024 31.3 6.0 99 173-276 199-300 (501)
489 PRK08649 inosine 5-monophospha 31.2 2.2E+02 0.0047 28.0 7.8 65 170-248 143-214 (368)
490 cd00740 MeTr MeTr subgroup of 31.1 4.2E+02 0.0092 24.3 13.0 91 171-276 29-127 (252)
491 PRK09121 5-methyltetrahydropte 30.7 4.6E+02 0.01 25.2 10.0 55 164-218 152-212 (339)
492 PRK02083 imidazole glycerol ph 30.6 4.1E+02 0.0089 24.0 12.0 65 174-250 159-228 (253)
493 PF00809 Pterin_bind: Pterin b 30.6 3.7E+02 0.008 23.8 8.7 94 173-279 24-127 (210)
494 PRK10415 tRNA-dihydrouridine s 30.5 4.8E+02 0.01 24.8 12.5 106 162-278 75-202 (321)
495 cd04722 TIM_phosphate_binding 30.3 3.1E+02 0.0068 22.6 13.5 28 55-82 12-39 (200)
496 cd08148 RuBisCO_large Ribulose 30.2 5.4E+02 0.012 25.3 11.7 113 133-277 127-255 (366)
497 COG0351 ThiD Hydroxymethylpyri 30.2 3.9E+02 0.0084 25.0 8.9 69 168-237 58-129 (263)
498 PF00215 OMPdecase: Orotidine 30.2 2.2E+02 0.0048 25.4 7.3 86 173-267 18-111 (226)
499 TIGR00044 pyridoxal phosphate 30.0 2.5E+02 0.0053 25.3 7.6 64 187-251 98-164 (229)
500 TIGR00658 orni_carb_tr ornithi 29.9 2.9E+02 0.0063 26.2 8.3 26 224-251 78-103 (304)
No 1
>PLN02489 homocysteine S-methyltransferase
Probab=100.00 E-value=1.9e-74 Score=551.14 Aligned_cols=307 Identities=70% Similarity=1.147 Sum_probs=273.5
Q ss_pred CcchHHHHHhhccCCeEEEecchHHHHHHCCCCCCCccccccccCCChHHHHHHHHHHHHhhccccccccccccHHHHHh
Q 021144 7 GTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEA 86 (317)
Q Consensus 7 ~~~~~l~~~l~~~~~~lilDGgmgT~L~~~G~~~~~~lws~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~ 86 (317)
.|+..|+++|++.++++||||||||+|+++|++.++++||+.+|+++||+|+++|++|++||||||+|||||+|+.+|.+
T Consensus 7 ~~~~~~~~~l~~~~~~lilDGgmGT~Le~~g~~~~~~lws~~~ll~~Pe~V~~vH~~yl~AGAdvI~TnTy~a~~~~l~~ 86 (335)
T PLN02489 7 QMSSLLEDLLRQAGGCAVIDGGFATELERHGADLNDPLWSAKCLITSPHLIRKVHLDYLEAGADIIITASYQATIQGFES 86 (335)
T ss_pred hhhHHHHHHHHhcCCEEEEEChHHHHHHhCCCCCCCCccchhhhcCCHHHHHHHHHHHHHhCCCEEEecccccCHHHHHH
Confidence 47888999998555699999999999999999988899999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHH
Q 021144 87 KGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETL 166 (317)
Q Consensus 87 ~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el 166 (317)
+|++.+++++++++||+|||+|++++..+.....+. +......+++++|||||||||+++.+|+||+|+|++.++++++
T Consensus 87 ~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~ 165 (335)
T PLN02489 87 RGLSREESETLLRKSVEIACEARDIFWDKCQKGSTS-RPGRELSYRPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKL 165 (335)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-ccccccCCCCcEEEEEcCCccccccCCcccCCCCccCCCHHHH
Confidence 999888899999999999999998764321000000 0001112357899999999999999999999999977899999
Q ss_pred HHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEE
Q 021144 167 KEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAV 246 (317)
Q Consensus 167 ~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~ai 246 (317)
+++|++|++.|+++|||+|+|||||++.|++++++++++.+.++|+|+||+|+++++|.+|+++.+++..+++..++++|
T Consensus 166 ~~~~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~~~~~~~i 245 (335)
T PLN02489 166 KDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADSCKKVVAV 245 (335)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHHHHhcCCceEE
Confidence 99999999999999999999999999999999999999876569999999999999999999999999998765578999
Q ss_pred EEcCCChhhhHHHHHHHHhhCCCcEEEEeCCCCccccccccccccCCCChhhHHHHHHHHHHccccccc
Q 021144 247 GINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVVSFSLHFFPLELILNPFASCRLISFF 315 (317)
Q Consensus 247 GvNC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~~~ 315 (317)
|+||++|+.+.++|++++...+.||++|||+|++||...+.|...++.+|++|++++++|++.|. +||
T Consensus 246 GiNC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga-~iI 313 (335)
T PLN02489 246 GINCTPPRFIHGLILSIRKVTSKPIVVYPNSGETYDGEAKEWVESTGVSDEDFVSYVNKWRDAGA-SLI 313 (335)
T ss_pred EecCCCHHHHHHHHHHHHhhcCCcEEEECCCCCCCCCccCcccCCCCCCHHHHHHHHHHHHHCCC-cEE
Confidence 99999999999999999998889999999999999998899986677789999999999999984 443
No 2
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=100.00 E-value=6.9e-70 Score=514.17 Aligned_cols=279 Identities=51% Similarity=0.822 Sum_probs=255.7
Q ss_pred HHHHHhhccCCeEEEecchHHHHHHCCCCCCCccccccccCCChHHHHHHHHHHHHhhccccccccccccHHHHHhCCCC
Q 021144 11 FMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFS 90 (317)
Q Consensus 11 ~l~~~l~~~~~~lilDGgmgT~L~~~G~~~~~~lws~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~~g~~ 90 (317)
.|+++|++ ++++|+||||||+|+++|++..+|+||+.+|+++||+|+++|++|++||||||+|||||+|+.+|+++|++
T Consensus 3 ~~~~~l~~-~~~lilDGgmGT~L~~~g~~~~~~~ws~~~l~~~Pe~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~~g~~ 81 (304)
T PRK09485 3 PFKELLAQ-GPVLILDGALATELEARGCDLNDSLWSAKVLLENPELIYQVHLDYFRAGADCAITASYQATFQGFAARGLS 81 (304)
T ss_pred hHHHHhcc-CCEEEEeChHHHHHHHcCCCCCCcchhhhhhccChHHHHHHHHHHHHhCCCEEEeeccccCHHHHHHcCCC
Confidence 47888873 56899999999999999998888999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHH
Q 021144 91 TEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFH 170 (317)
Q Consensus 91 ~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h 170 (317)
.+++++||++||+|||+|++++. ..+++|||||||+|+++.+|+||+|+|+ +++++++++|
T Consensus 82 ~~~~~~l~~~av~lA~~a~~~~~-----------------~~~~~VaGsiGP~g~~l~~~~~y~g~~~--~~~~~~~~~~ 142 (304)
T PRK09485 82 EAEAEELIRRSVELAKEARDEFW-----------------AEKPLVAGSVGPYGAYLADGSEYRGDYG--LSEEELQDFH 142 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc-----------------cCCceEEEecCCcccccCCCCCCCCCCC--CCHHHHHHHH
Confidence 77899999999999999997641 1258999999999999999999999996 6999999999
Q ss_pred HHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcC
Q 021144 171 RRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (317)
Q Consensus 171 ~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC 250 (317)
++|++.|.++|||+|+|||||++.|++++++++++...++|||+||+|+++++|++|+++++++..+.+...+++||+||
T Consensus 143 ~~q~~~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~~~~~pv~is~~~~~~g~l~~G~~~~~~~~~l~~~~~~~~iGiNC 222 (304)
T PRK09485 143 RPRIEALAEAGADLLACETIPNLDEAEALVELLKEEFPGVPAWLSFTLRDGTHISDGTPLAEAAALLAASPQVVAVGVNC 222 (304)
T ss_pred HHHHHHHhhCCCCEEEEeccCCHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcCCCCCCHHHHHHHHhcCCCceEEEecC
Confidence 99999999999999999999999999999999996533699999999999999999999999999987545689999999
Q ss_pred CChhhhHHHHHHHHhhCCCcEEEEeCCCCccccccccccccCCCChhhHHHHHHHHHHccc
Q 021144 251 TSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVVSFSLHFFPLELILNPFASCRL 311 (317)
Q Consensus 251 ~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~w~~~~~~~~~~~~~~~~~w~~~~~ 311 (317)
++|+++.++|+.++...+.|+++|||+|.+|+...+.|.. +.++++|++++++|++.|.
T Consensus 223 ~~p~~~~~~l~~~~~~~~~pl~~~PNaG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~G~ 281 (304)
T PRK09485 223 TAPELVTAAIAALRAVTDKPLVVYPNSGEVYDAVTKTWHG--PADDASLGELAPEWYAAGA 281 (304)
T ss_pred CCHHHHHHHHHHHHhccCCcEEEECCCCCCCCCCCCcccC--CCChHHHHHHHHHHHHcCC
Confidence 9999999999999888889999999999999988888863 2346689999999999984
No 3
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-70 Score=498.22 Aligned_cols=267 Identities=45% Similarity=0.738 Sum_probs=249.8
Q ss_pred CCeEEEecchHHHHHHCCCCCCCccccccccCCChHHHHHHHHHHHHhhccccccccccccHHHHHhCCCCHHHHHHHHH
Q 021144 20 GGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLR 99 (317)
Q Consensus 20 ~~~lilDGgmgT~L~~~G~~~~~~lws~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~ 99 (317)
..+|||||||+|||+++|.++++|+||+++|++.||+|+++|.+|++||||||+|+|||+++.++.+. .+.++.+++++
T Consensus 8 ~~vliLDGG~~tELe~rG~~l~~plWSa~~l~~~peiv~~vh~df~~aGa~ii~T~TYqa~~~~~~e~-~~~~~~~~l~~ 86 (300)
T COG2040 8 LSVLILDGGLATELERRGCDLSDPLWSALALVDEPEIVRNVHADFLRAGADIITTATYQATPEGFAER-VSEDEAKQLIR 86 (300)
T ss_pred CCEEEecCchhHHHHhcCCCCCchhhhhhhcccCHHHHHHHHHHHHHhcCcEEeehhhhcCHHHHHHh-cchhHHHHHHH
Confidence 56999999999999999999999999999999999999999999999999999999999999999887 77788999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 021144 100 RSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILAN 179 (317)
Q Consensus 100 ~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~ 179 (317)
.+|+|||+|++.+..+ ...|+|||||||+++.+ ||+|+|+. +.+.+++||++|+++|.+
T Consensus 87 ~sv~la~~ard~~g~~-----------------~~~iagsiGP~ga~~a~--Ey~g~Y~~--~~d~~~~fh~~rie~l~~ 145 (300)
T COG2040 87 RSVELARAARDAYGEE-----------------NQNIAGSLGPYGAALAD--EYRGDYGA--SQDALYKFHRPRIEALNE 145 (300)
T ss_pred HHHHHHHHHHHHhccc-----------------ccccceeccchhhhcCh--hhcCccCc--cHHHHHHHHHHHHHHHHh
Confidence 9999999999987542 34589999999999998 99999985 888889999999999999
Q ss_pred CCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCChhhhHHH
Q 021144 180 SGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGL 259 (317)
Q Consensus 180 ~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~p~~~~~~ 259 (317)
+|||+|++||+|++.|++++++++++. ++|+||||||+++++|++|+++.+++..++..+++.++||||++|+++..+
T Consensus 146 ag~Dlla~ETip~i~Ea~Aiv~l~~~~--s~p~wISfT~~d~~~lr~Gt~l~eaa~~~~~~~~iaa~gvNC~~p~~~~a~ 223 (300)
T COG2040 146 AGADLLACETLPNITEAEAIVQLVQEF--SKPAWISFTLNDDTRLRDGTPLSEAAAILAGLPNIAALGVNCCHPDHIPAA 223 (300)
T ss_pred CCCcEEeecccCChHHHHHHHHHHHHh--CCceEEEEEeCCCCccCCCccHHHHHHHHhcCcchhheeeccCChhhhHHH
Confidence 999999999999999999999999998 499999999999999999999999999998877899999999999999999
Q ss_pred HHHH-HhhCCCcEEEEeCCCCccccccccccccCCCChhhHHHHHHHHHHccc
Q 021144 260 ILSV-RKVTSKPVIIYPNSGETYNAELKKWVVSFSLHFFPLELILNPFASCRL 311 (317)
Q Consensus 260 l~~l-~~~~~~pl~vyPNaG~~~d~~~~~w~~~~~~~~~~~~~~~~~w~~~~~ 311 (317)
++.+ ...+.+|++||||+|+.||+..+.|.. ....++.|...+.+|+.+|.
T Consensus 224 i~~l~~~~~~~piivYPNSGe~~d~~~k~w~~-p~~~~~~~~~~a~~w~~~GA 275 (300)
T COG2040 224 IEELSKLLTGKPIIVYPNSGEQYDPAGKTWHG-PALSADSYSTLAKSWVEAGA 275 (300)
T ss_pred HHHHHhcCCCCceEEcCCcccccCcCCCcCCC-CCCchhHHHHHHHHHHhccc
Confidence 9999 445689999999999999999999975 33678999999999999986
No 4
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.5e-70 Score=501.79 Aligned_cols=284 Identities=42% Similarity=0.698 Sum_probs=260.1
Q ss_pred chHHHHHhhccCCeEEEecchHHHHHHCCCC-CCCccccccccCCChHHHHHHHHHHHHhhccccccccccccHHHHHhC
Q 021144 9 TSFMTDFLQKCGGYSVVDGGFATELERHGAD-LNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAK 87 (317)
Q Consensus 9 ~~~l~~~l~~~~~~lilDGgmgT~L~~~G~~-~~~~lws~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~~ 87 (317)
+...+.+++..++++|+||||||+|+++|++ .++|+||+.+++++||+|+++|++||+||||||+|||||++...+..+
T Consensus 6 ~~~~~~~~~~~~~vlvlDGG~~t~Ler~g~~~~~~PlWs~~~~~s~Pe~V~~~H~efL~aGadIi~T~Tyqas~~~~~~~ 85 (317)
T KOG1579|consen 6 SKLKKDILENTGRVLVLDGGFGTQLERRGYDKVDSPLWSAEALASNPEAVEQVHKEFLRAGADIISTNTYQASSDGFEEY 85 (317)
T ss_pred hhhhHHHHhccCcEEEEeChHHHHHHhhcccccCCCCCCchhhccChHHHHHHHHHHHHccCcEEEEeeeeecchHHhhh
Confidence 4456667776689999999999999999998 667999999999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHH
Q 021144 88 GFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLK 167 (317)
Q Consensus 88 g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~ 167 (317)
.+.++..++++..+++|+.|++.+..++ -||+|||||+|+++++|+||+|+|++++++++++
T Consensus 86 -~~~~~~~el~~~s~~~a~~Are~~~~~~-----------------~~v~gsiGp~~A~l~~g~eytg~Y~~~~~~~el~ 147 (317)
T KOG1579|consen 86 -VEEEELIELYEKSVELADLARERLGEET-----------------GYVAGSIGPYGATLADGSEYTGIYGDNVEFEELY 147 (317)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHhcccc-----------------ceeeeecccccceecCCcccccccccccCHHHHH
Confidence 5557899999999999999998875432 2999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEE
Q 021144 168 EFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVG 247 (317)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiG 247 (317)
+||++|++.|.++|||+|+|||+|+..|++++++++++..+++|+||||+|.|++++++|+++++++..+.+..++.+||
T Consensus 148 ~~~k~qle~~~~~gvD~L~fETip~~~EA~a~l~~l~~~~~~~p~~is~t~~d~g~l~~G~t~e~~~~~~~~~~~~~~IG 227 (317)
T KOG1579|consen 148 DFFKQQLEVFLEAGVDLLAFETIPNVAEAKAALELLQELGPSKPFWISFTIKDEGRLRSGETGEEAAQLLKDGINLLGIG 227 (317)
T ss_pred HHHHHHHHHHHhCCCCEEEEeecCCHHHHHHHHHHHHhcCCCCcEEEEEEecCCCcccCCCcHHHHHHHhccCCceEEEE
Confidence 99999999999999999999999999999999999999867899999999999999999999999999887765699999
Q ss_pred EcCCChhhhHHHHHHHH-hhCCCcEEEEeCCCCccccccccccccCCCChhhHHHHHHHHHHccc
Q 021144 248 INCTSPRFIHGLILSVR-KVTSKPVIIYPNSGETYNAELKKWVVSFSLHFFPLELILNPFASCRL 311 (317)
Q Consensus 248 vNC~~p~~~~~~l~~l~-~~~~~pl~vyPNaG~~~d~~~~~w~~~~~~~~~~~~~~~~~w~~~~~ 311 (317)
|||++|..+.++++.+. ..++.||+||||+|+.||.+.+.|... ....+.|..++++|.+.|.
T Consensus 228 vNC~~~~~~~~~~~~L~~~~~~~~llvYPNsGe~yd~~~g~~~~~-~~~~~~~~~~~~~~~~lGv 291 (317)
T KOG1579|consen 228 VNCVSPNFVEPLLKELMAKLTKIPLLVYPNSGEVYDNEKGGWIPT-PFGLEPWQTYVKKAIDLGV 291 (317)
T ss_pred eccCCchhccHHHHHHhhccCCCeEEEecCCCCCCccccCcccCC-CcccchHHHHHHHHHhccc
Confidence 99999999999999888 667899999999999999999999754 3445669999999999863
No 5
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=100.00 E-value=9.1e-66 Score=486.30 Aligned_cols=268 Identities=45% Similarity=0.737 Sum_probs=204.1
Q ss_pred eEEEecchHHHHHHCCCCCCCcccccc-------ccCCChHHHHHHHHHHHHhhccccccccccccHHHHHhCCCCHHHH
Q 021144 22 YSVVDGGFATELERHGADLNDPLWSAK-------CLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEA 94 (317)
Q Consensus 22 ~lilDGgmgT~L~~~G~~~~~~lws~~-------~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~ 94 (317)
||||||||||+|+++|++..+++||+. +++++|++|+++|++|++||||||+|||||+|+.+|+++|++.+.+
T Consensus 1 ililDGgmGT~L~~~g~~~~~~~~s~~~~~~~~~~~~~~p~~v~~iH~~yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~ 80 (305)
T PF02574_consen 1 ILILDGGMGTELERRGLDLNDPLWSALSHPWNELLNIENPELVRQIHRDYLEAGADIITTNTYQASRERLKEYGLSDEEA 80 (305)
T ss_dssp -CTT--EEHHCCHHHHHHHCTSS----TTT-GGTHHHH-HHHHHHHHHHHHHHT-SEEEEC-TT-SHHHHGGGT-GGGCH
T ss_pred CEEeehhhHHHHHhCCcCccccccccccccchHhhhccCHHHHHHHHHHHHHCCCCeEEecCCcCchhhhhhcCCcHHHH
Confidence 579999999999999988888888755 6789999999999999999999999999999999999999987667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 021144 95 EALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRV 174 (317)
Q Consensus 95 ~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi 174 (317)
+++|++||++||+|++++. .+++++|+|||||||++|. |+||+|+|. .++++++++|++|+
T Consensus 81 ~~l~~~av~lA~~a~~~~~----------------~~~~~~VaGsiGP~ga~l~-g~~y~~~~~--~~~~~~~~~~~~q~ 141 (305)
T PF02574_consen 81 EELNRAAVELAREAADEYG----------------SGRKVLVAGSIGPYGAYLS-GSEYPGDYG--LSFEELRDFHREQA 141 (305)
T ss_dssp HHHHHHHHHHHHHHHTT-------------------TT-SEEEEEEE--S---------CTTCT--T-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcc----------------CCCccEEEEEcccccccch-hhhcccccc--ccHHHHHHHHHHHH
Confidence 9999999999999997653 1346899999999999999 999999997 59999999999999
Q ss_pred HHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcC-----CCceEEEEc
Q 021144 175 LILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSC-----EQVVAVGIN 249 (317)
Q Consensus 175 ~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~-----~~~~aiGvN 249 (317)
+.|.++|||+|+|||||++.|++++++++++.. ++|+|+||++.+++++.+|+++.++++.++.. .++++||+|
T Consensus 142 ~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~-~~p~~is~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~iGvN 220 (305)
T PF02574_consen 142 EALADAGVDLLLFETMPSLAEAKAALEAIKEVT-GLPVWISFSCKDSGRLRDGTSLEDAVQVIDELLRALPPGPDAIGVN 220 (305)
T ss_dssp HHHHHTT-SEEEEEEEC-CSCHHHHHHHHHHHH-HCCSSEEE-EEEEES-TCTTBCTTSHHHHHHHHHHHCTT-SEEEEE
T ss_pred HHHHhcCCCEEEEecCcHHHHHHHHHHHHHhhh-hhhceeccchhhhccccCCCCHHHHHHHHHHHHHHhhhhhheEEcC
Confidence 999999999999999999999999999999932 59999999999999999999999888887654 589999999
Q ss_pred CCChhhhHHHHHHHHhh-CCCcEEEEeCCCCcccccccccccc-CCCChhhHHHHHHHHHHccc
Q 021144 250 CTSPRFIHGLILSVRKV-TSKPVIIYPNSGETYNAELKKWVVS-FSLHFFPLELILNPFASCRL 311 (317)
Q Consensus 250 C~~p~~~~~~l~~l~~~-~~~pl~vyPNaG~~~d~~~~~w~~~-~~~~~~~~~~~~~~w~~~~~ 311 (317)
|++|..+...|.++... .+.||++|||+|++||.. +.|... ....++ |.+++++|++.|.
T Consensus 221 C~~~~~~~~~l~~~~~~~~~~~l~vyPNsG~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~G~ 282 (305)
T PF02574_consen 221 CTSPPEIMKALLELMSATHDIPLIVYPNSGEPYDVG-KVWSETPEDFAPE-WAEFVKEWVEAGA 282 (305)
T ss_dssp SSS-HHHHHHHHHHHHHHT-SEEEEE--SBS-TTSS-GGSTTTTTSHGGG--HHHHHHHHHHHH
T ss_pred CCCcHHHHhHHHHHHhccCCceEEEecCCCCCcccc-cccccchhhhHHH-HHHHHHHHHHhCC
Confidence 99887766666666555 389999999999999998 788642 222333 8889999999886
No 6
>PRK07534 methionine synthase I; Validated
Probab=100.00 E-value=4.4e-62 Score=465.66 Aligned_cols=266 Identities=23% Similarity=0.297 Sum_probs=230.3
Q ss_pred cchHHHHHhhccCCeEEEecchHHHHHHCCCCCC--CccccccccCCChHHHHHHHHHHHHhhccccccccccccHHHHH
Q 021144 8 TTSFMTDFLQKCGGYSVVDGGFATELERHGADLN--DPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFE 85 (317)
Q Consensus 8 ~~~~l~~~l~~~~~~lilDGgmgT~L~~~G~~~~--~~lws~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~ 85 (317)
|+..|+++|++ ++++||||||||+|+++|++.. +++|| +++||+|++||++|++||||||+|||||+|+.+|.
T Consensus 1 ~~~~~~~~l~~-~~ililDGgmGTeL~~~G~~~~~~~~lws----i~~Pe~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~ 75 (336)
T PRK07534 1 MTNALSDLLAE-RGVLLADGATGTNLFNMGLESGEAPELWN----EDHPDNITALHQGFVDAGSDIILTNSFGGTAARLK 75 (336)
T ss_pred CChHHHHHHhc-CCEEEEECHHHHHHHHCCCCCCCCchHhc----ccCHHHHHHHHHHHHHhcCCEEEecCcccCHHHHH
Confidence 45678999974 5689999999999999999776 47998 99999999999999999999999999999999998
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHH
Q 021144 86 AKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLET 165 (317)
Q Consensus 86 ~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~e 165 (317)
.+|. .+++.++|++||+|||+|++++ +++++|||||||||+++.| +++ ++.++
T Consensus 76 ~~~~-~~~~~~l~~~av~lAr~a~~~~------------------~~~~~VaGsIGP~g~~l~~-------~~~-~~~~e 128 (336)
T PRK07534 76 LHDA-QDRVHELNRAAAEIAREVADKA------------------GRKVIVAGSVGPTGEIMEP-------MGA-LTHAL 128 (336)
T ss_pred hcCc-HHHHHHHHHHHHHHHHHHHHhc------------------CCccEEEEecCCCccccCC-------CCC-CCHHH
Confidence 8885 4779999999999999998642 2468999999999998764 333 68899
Q ss_pred HHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcC-CCce
Q 021144 166 LKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSC-EQVV 244 (317)
Q Consensus 166 l~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~-~~~~ 244 (317)
++++|++|++.|.++|||+|+|||||++.|++++++++++. ++|||+||+|+++++|.+|+++++++..+... .+++
T Consensus 129 ~~~~~~~qi~~l~~~gvD~l~~ET~p~l~E~~a~~~~~~~~--~~Pv~vSft~~~~g~l~~G~~~~~~~~~~~~~~~~~~ 206 (336)
T PRK07534 129 AVEAFHEQAEGLKAGGADVLWVETISAPEEIRAAAEAAKLA--GMPWCGTMSFDTAGRTMMGLTPADLADLVEKLGEPPL 206 (336)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHc--CCeEEEEEEECCCCeeCCCCcHHHHHHHHHhcCCCce
Confidence 99999999999999999999999999999999999999986 49999999999999999999999999998752 3569
Q ss_pred EEEEcCCC-hhhhHHHHHH-HHhhCCCcEEEEeCCCC-ccccccccccccCCCChhhHHHHHHHHHHccc
Q 021144 245 AVGINCTS-PRFIHGLILS-VRKVTSKPVIIYPNSGE-TYNAELKKWVVSFSLHFFPLELILNPFASCRL 311 (317)
Q Consensus 245 aiGvNC~~-p~~~~~~l~~-l~~~~~~pl~vyPNaG~-~~d~~~~~w~~~~~~~~~~~~~~~~~w~~~~~ 311 (317)
+||+||++ |+++...+.. +...+++|++||||+|+ .|+..... ++.+|+.|++++++|++.|.
T Consensus 207 avGvNC~~gp~~~~~~l~~~~~~~~~~pl~vyPNaG~p~~~~~~~~----~~~~p~~~~~~~~~~~~~Ga 272 (336)
T PRK07534 207 AFGANCGVGASDLLRTVLGFTAQGPERPIIAKGNAGIPKYVDGHIH----YDGTPELMAEYAVLARDAGA 272 (336)
T ss_pred EEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCCCcccCCCccc----cCCCHHHHHHHHHHHHHcCC
Confidence 99999995 9988555544 45556789999999998 56543222 34689999999999999984
No 7
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-60 Score=434.22 Aligned_cols=279 Identities=27% Similarity=0.342 Sum_probs=242.8
Q ss_pred chHHHHHhhccCCeEEEecchHHHHHHCCCCCCC----ccccccccCCChHHHHHHHHHHHHhhccccccccccccHHHH
Q 021144 9 TSFMTDFLQKCGGYSVVDGGFATELERHGADLND----PLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGF 84 (317)
Q Consensus 9 ~~~l~~~l~~~~~~lilDGgmgT~L~~~G~~~~~----~lws~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l 84 (317)
.+.+.+.|+ ++|||+||||||+|++.|++..+ .--+..+++++||.|++||++|++||||||+||||++|+.+|
T Consensus 5 ~~~l~~~l~--~rVLv~DGAmGT~lq~~~l~~~df~g~~g~nE~LnlT~Pd~I~~IH~aY~eAGADiIeTNTFgat~i~l 82 (311)
T COG0646 5 NTQLREALK--ERVLVLDGAMGTMLQSYGLDEADFRGLKGNNELLNLTKPDVIEAIHRAYIEAGADIIETNTFGATTIKL 82 (311)
T ss_pred hHHHHHHHH--cCEEEeechhhhhHHhcCCcHHhhccccCChHHHhcCCcHHHHHHHHHHHhccCcEEEecCCCcchhhH
Confidence 556788888 89999999999999999987551 112344569999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHH
Q 021144 85 EAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLE 164 (317)
Q Consensus 85 ~~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~ 164 (317)
++|+++ +++.+||++|++|||+|++++. ..+++||||||||++..++. +|++ .++++
T Consensus 83 ady~le-d~v~~in~~aa~iAR~aA~~~~----------------~~k~rfVaGsiGPt~k~~~~----~~~~--~v~fd 139 (311)
T COG0646 83 ADYGLE-DKVYEINQKAARIARRAADEAG----------------DPKPRFVAGSIGPTNKTLSI----SPDF--AVTFD 139 (311)
T ss_pred hhhChH-HHHHHHHHHHHHHHHHHHhhcC----------------CCCceEEEEeccCcCCcCCc----CCcc--cccHH
Confidence 999998 5899999999999999998752 11588999999999975542 2333 38999
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHh----CCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcC
Q 021144 165 TLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEE----GITIPAWFSFNSKDGINVVSGDSILECASIADSC 240 (317)
Q Consensus 165 el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~----~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~ 240 (317)
++++.|++|++.|++.|||+|+|||+.++.|+|+++.++++. +..+|+|+|.|+.+.|++++|.+++++...+++
T Consensus 140 ~l~~ay~eq~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~~a~~~~l~~- 218 (311)
T COG0646 140 ELVEAYREQVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQTIEAFLNSLEH- 218 (311)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCCcccEEEEEEEecCceecCCCcHHHHHHHhhc-
Confidence 999999999999999999999999999999999999888764 345999999999999999999999999999987
Q ss_pred CCceEEEEcCC-ChhhhHHHHHHHHhhCCCcEEEEeCCCCccccccccccccCCCChhhHHHHHHHHHHcccccccc
Q 021144 241 EQVVAVGINCT-SPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVVSFSLHFFPLELILNPFASCRLISFFS 316 (317)
Q Consensus 241 ~~~~aiGvNC~-~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 316 (317)
.++++||+||. +|+.|.+.|+.++...+.++.+|||+|.+--... ...|+.+|++|++.+..|.+.|++||+-
T Consensus 219 ~~~~~vGlNCa~Gp~~m~~~l~~ls~~~~~~vs~~PNAGLP~~~g~---~~~Y~~~p~~~a~~~~~f~~~g~vnIvG 292 (311)
T COG0646 219 LGPDAVGLNCALGPDEMRPHLRELSRIADAFVSVYPNAGLPNAFGE---RAVYDLTPEYMAEALAEFAEEGGVNIVG 292 (311)
T ss_pred cCCcEEeeccccCHHHHHHHHHHHHhccCceEEEeCCCCCCcccCC---ccccCCCHHHHHHHHHHHHHhCCceeec
Confidence 58999999997 8999999999999999999999999998622211 1236789999999999999999999873
No 8
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=100.00 E-value=7e-60 Score=504.64 Aligned_cols=283 Identities=22% Similarity=0.333 Sum_probs=249.8
Q ss_pred cchHHHHHhhccCCeEEEecchHHHHHHCCCCCCC------cccc-------ccccCCChHHHHHHHHHHHHhhcccccc
Q 021144 8 TTSFMTDFLQKCGGYSVVDGGFATELERHGADLND------PLWS-------AKCLVSSPHLVRKVHLDYLDAGANIIIT 74 (317)
Q Consensus 8 ~~~~l~~~l~~~~~~lilDGgmgT~L~~~G~~~~~------~lws-------~~~ll~~Pe~V~~iH~~Yl~AGAdiI~T 74 (317)
|+..|++.|+ +++|||||||||+||++|++..+ ++|+ ..+++++||+|++||++|++||||||+|
T Consensus 7 ~~~~l~~~L~--~riLIlDGAMGT~Lq~~gl~~~d~~g~~~~~ws~~l~~~~e~l~lt~Pe~I~~IH~~Yl~AGADII~T 84 (1229)
T PRK09490 7 RLAQLRALLA--ERILVLDGAMGTMIQRYKLEEADYRGERFADWPCDLKGNNDLLVLTQPDVIEAIHRAYLEAGADIIET 84 (1229)
T ss_pred HHHHHHHHHc--CCeEEEECcchHHHHHcCCChhhccccccccccccccCCchhhhcCCHHHHHHHHHHHHHHhCceeec
Confidence 4556889998 78999999999999999985422 5665 4678999999999999999999999999
Q ss_pred ccccccHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEeeCCCcCc--cCCCCC
Q 021144 75 ASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAY--LADGSE 152 (317)
Q Consensus 75 nTy~as~~~l~~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~--l~~gse 152 (317)
|||++|+.+|.++|++ ++++++|++|++|||+|++++..++ .+++++|||||||+|.+ ++|++|
T Consensus 85 NTF~a~~~~L~~ygl~-~~~~eln~~av~LAreAa~~~~~~~-------------~~~~~~VAGSIGP~g~~~sl~p~~e 150 (1229)
T PRK09490 85 NTFNATTIAQADYGME-SLVYELNFAAARLAREAADEWTAKT-------------PDKPRFVAGVLGPTNRTASISPDVN 150 (1229)
T ss_pred CCCCCCHHHHhhCChH-HHHHHHHHHHHHHHHHHHHHhhhcc-------------CCCceEEEEecCCCCcccccCCCcc
Confidence 9999999999999997 6799999999999999998764321 23578999999999964 669999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHh----CCCccEEEEEEEcC-CCcccCC
Q 021144 153 YSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEE----GITIPAWFSFNSKD-GINVVSG 227 (317)
Q Consensus 153 Y~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~----~~~~pv~iSf~~~~-~~~l~~G 227 (317)
|.| |++ +++++++++|++|++.|+++|||+|+||||+++.|+++++.++++. +.++|+|+||||.+ +|++++|
T Consensus 151 ~pg-~~~-it~del~~~y~eQi~~L~e~GVDllliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~T~~d~~Gr~lsG 228 (1229)
T PRK09490 151 DPG-FRN-VTFDELVAAYREQTRGLIEGGADLILIETIFDTLNAKAAIFAVEEVFEELGVRLPVMISGTITDASGRTLSG 228 (1229)
T ss_pred ccc-ccC-CCHHHHHHHHHHHHHHHHhCCCCEEEEeeeCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCccCCC
Confidence 988 665 8999999999999999999999999999999999999999998864 44699999999965 7999999
Q ss_pred CcHHHHHHHhhcCCCceEEEEcCC-ChhhhHHHHHHHHhhCCCcEEEEeCCCCccccccccccccCCCChhhHHHHHHHH
Q 021144 228 DSILECASIADSCEQVVAVGINCT-SPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVVSFSLHFFPLELILNPF 306 (317)
Q Consensus 228 ~~l~~a~~~~~~~~~~~aiGvNC~-~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~w~~~~~~~~~~~~~~~~~w 306 (317)
+++++++..+.. .++++||+||+ +|+.|.++|+.+.+.++.|++||||+|.++.. . .|+.+|++|++++.+|
T Consensus 229 ~~~ea~~~~l~~-~~~~avGlNCs~GP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~--~----~yd~tPe~~a~~~~~~ 301 (1229)
T PRK09490 229 QTTEAFWNSLRH-AKPLSIGLNCALGADELRPYVEELSRIADTYVSAHPNAGLPNAF--G----EYDETPEEMAAQIGEF 301 (1229)
T ss_pred CcHHHHHHHHhc-CCCCEEEEcCCCcHHHHHHHHHHHHHhcCCeEEEEeCCCCCCCC--C----CCCCCHHHHHHHHHHH
Confidence 999999988875 68999999999 79999999999999989999999999987532 1 3557899999999999
Q ss_pred HHccccccc
Q 021144 307 ASCRLISFF 315 (317)
Q Consensus 307 ~~~~~~~~~ 315 (317)
++.|.++|+
T Consensus 302 ~~~G~v~II 310 (1229)
T PRK09490 302 AESGFLNIV 310 (1229)
T ss_pred HHcCCCCEE
Confidence 999998886
No 9
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=100.00 E-value=3e-58 Score=470.74 Aligned_cols=259 Identities=24% Similarity=0.332 Sum_probs=232.8
Q ss_pred HHHHhhccCCeEEEecchHHHHHHCCCCCCCccccccccCCChHHHHHHHHHHHHhhccccccccccccHHHHHhCCCCH
Q 021144 12 MTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFST 91 (317)
Q Consensus 12 l~~~l~~~~~~lilDGgmgT~L~~~G~~~~~~lws~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~~g~~~ 91 (317)
|.+.|+ ++++||||||||+|+++|+++++++ +.+++++||+|+++|++|++||||||+|||||+|+.+|+++|++
T Consensus 4 ~~~~l~--~~~lilDGgmGT~L~~~G~~~~~~~--~~~~l~~Pe~i~~vH~~yl~AGAdvi~TnTy~as~~~l~~~g~~- 78 (612)
T PRK08645 4 LLERLK--ERVLIADGAMGTLLYSRGVPLDRCF--EELNLSHPELILRIHREYIEAGADVIQTNTFGANRIKLKRYGLE- 78 (612)
T ss_pred HHHHhc--CCeEEEECHHHHHHHHcCCCCCCCh--HHhhccCHHHHHHHHHHHHHhCCCEEecCcccccHHHHHhcCch-
Confidence 677777 7899999999999999999876542 67889999999999999999999999999999999999999997
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHH
Q 021144 92 EEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHR 171 (317)
Q Consensus 92 ~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~ 171 (317)
+++.++|++||+|||+|++ ++++|||||||||+ | ++|++ ++.++++++|+
T Consensus 79 ~~~~~l~~~av~lAr~a~~---------------------~~~~VagsiGP~g~-------~-~~~~~-~~~~~~~~~~~ 128 (612)
T PRK08645 79 DKVKEINRAAVRLAREAAG---------------------DDVYVAGTIGPIGG-------R-GPLGD-ISLEEIRREFR 128 (612)
T ss_pred HHHHHHHHHHHHHHHHHhc---------------------CCCeEEEeCCCCCC-------C-CCCCC-CCHHHHHHHHH
Confidence 6799999999999999973 25899999999998 4 56765 79999999999
Q ss_pred HHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCC
Q 021144 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT 251 (317)
Q Consensus 172 ~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~ 251 (317)
+|++.|.++|||+|+|||||++.|++++++++++.+ ++|+|+||+|++++++++|+++++++..+.+ .++++||+||+
T Consensus 129 ~~~~~l~~~gvD~l~~ET~~~~~Ea~a~~~a~~~~~-~~p~~~Sf~~~~~g~l~~G~~~~~~~~~~~~-~~~~avGiNC~ 206 (612)
T PRK08645 129 EQIDALLEEGVDGLLLETFYDLEELLLALEAAREKT-DLPIIAQVAFHEDGVTQNGTSLEEALKELVA-AGADVVGLNCG 206 (612)
T ss_pred HHHHHHHhcCCCEEEEEccCCHHHHHHHHHHHHHhC-CCcEEEEEEECCCCeeCCCCCHHHHHHHHHh-CCCCEEEecCC
Confidence 999999999999999999999999999999999875 4999999999999999999999999999976 46999999999
Q ss_pred C-hhhhHHHHHHHHhhCCCcEEEEeCCCCc-cccccccccccCCCChhhHHHHHHHHHHccc
Q 021144 252 S-PRFIHGLILSVRKVTSKPVIIYPNSGET-YNAELKKWVVSFSLHFFPLELILNPFASCRL 311 (317)
Q Consensus 252 ~-p~~~~~~l~~l~~~~~~pl~vyPNaG~~-~d~~~~~w~~~~~~~~~~~~~~~~~w~~~~~ 311 (317)
+ |+.+.++|+.+...+++|++||||+|++ ++.....| ..+|+.|++++.+|++.|.
T Consensus 207 ~~p~~~~~~l~~l~~~~~~pl~vypNaG~~~~~~~~~~~----~~~p~~~~~~~~~~~~~Ga 264 (612)
T PRK08645 207 LGPYHMLEALERIPIPENAPLSAYPNAGLPEYVDGRYVY----SANPEYFAEYALEFVEQGV 264 (612)
T ss_pred CCHHHHHHHHHHHHhccCceEEEEECCCCCCCCCCcccc----CCCHHHHHHHHHHHHHhCC
Confidence 5 9999999999988778999999999985 44332223 3589999999999999983
No 10
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=100.00 E-value=1.4e-57 Score=488.15 Aligned_cols=272 Identities=21% Similarity=0.262 Sum_probs=242.3
Q ss_pred CCeEEEecchHHHHHHCCCCCCCcccc------------ccccCCChHHHHHHHHHHHHhhccccccccccccHHHHHhC
Q 021144 20 GGYSVVDGGFATELERHGADLNDPLWS------------AKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAK 87 (317)
Q Consensus 20 ~~~lilDGgmgT~L~~~G~~~~~~lws------------~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~~ 87 (317)
+++|||||||||+||++|++..+++|+ +.+++++||+|++||++|++||||||+|||||+|+.+|.++
T Consensus 3 ~rilvlDGamGT~Lq~~gl~~~d~~g~~~~~~~~~~~~~e~l~lt~Pe~I~~IH~~Yl~AGAdII~TNTF~a~~~~L~~y 82 (1178)
T TIGR02082 3 QRILVLDGAMGTQLQSANLTEADFRGAEFTCHRELKGNNDILNLTKPEVIATIHRAYFEAGADIIETNTFNSTTISQADY 82 (1178)
T ss_pred CceEEEEChhHHHHHhCCCCccccCcccccccccccCCcHHhhcCCHHHHHHHHHHHHHHhchheecCCccCCHHHHhhC
Confidence 689999999999999999998888995 67789999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEeeCCCcCcc--CCCCCCCCCCCCCCCHHH
Q 021144 88 GFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYL--ADGSEYSGDYGDAVSLET 165 (317)
Q Consensus 88 g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~l--~~gseY~g~y~~~~s~~e 165 (317)
|++ +++.++|++|++|||+|++++.. . .+++++|||||||+|.++ .|+++|.| |++ +++++
T Consensus 83 g~~-~~~~eln~~av~lAr~Aa~~~~~-~-------------~~~~~~VAGsIGP~g~~~~lgp~~~~~~-~~~-~t~de 145 (1178)
T TIGR02082 83 DLE-DLIYDLNFKGAKLARAVADEFTL-T-------------PEKPRFVAGSMGPTNKTATLSPDVERPG-FRN-VTYDE 145 (1178)
T ss_pred CHH-HHHHHHHHHHHHHHHHHHHhhcc-c-------------CCCceEEEEEeCCCCCCccCCCccccCc-cCC-CCHHH
Confidence 997 67999999999999999987632 0 234689999999999854 45566655 876 89999
Q ss_pred HHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHh----CCCccEEEEEE-EcCCCcccCCCcHHHHHHHhhcC
Q 021144 166 LKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEE----GITIPAWFSFN-SKDGINVVSGDSILECASIADSC 240 (317)
Q Consensus 166 l~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~----~~~~pv~iSf~-~~~~~~l~~G~~l~~a~~~~~~~ 240 (317)
++++|++|++.|+++|||+|+||||+++.|+++++.++++. +.++|||+|++ ++++|++++|+++++++..+..
T Consensus 146 l~~~y~eq~~~L~~~GvD~iliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~~~G~~~~~~~~~l~~- 224 (1178)
T TIGR02082 146 LVDAYTEQAKGLLDGGVDLLLIETCFDTLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQTIEAFLTSLEH- 224 (1178)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCeeCCCCcHHHHHHHHhc-
Confidence 99999999999999999999999999999999999999873 34699999955 5677999999999999988875
Q ss_pred CCceEEEEcCC-ChhhhHHHHHHHHhhCCCcEEEEeCCCCccccccccccccCCCChhhHHHHHHHHHHccccccc
Q 021144 241 EQVVAVGINCT-SPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVVSFSLHFFPLELILNPFASCRLISFF 315 (317)
Q Consensus 241 ~~~~aiGvNC~-~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~~~ 315 (317)
.++++||+||+ +|+.|.++|+.+.+.++.|++||||+|+++.. . .++.+|++|++++.+|++.|.++|+
T Consensus 225 ~~~~avGlNCs~gP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~--~----~yd~~p~~~a~~~~~~~~~ggv~II 294 (1178)
T TIGR02082 225 AGIDMIGLNCALGPDEMRPHLKHLSEHAEAYVSCHPNAGLPNAF--G----EYDLTPDELAKALADFAAEGGLNIV 294 (1178)
T ss_pred CCCCEEEeCCCCCHHHHHHHHHHHHHhcCceEEEEeCCCCCCCC--C----cccCCHHHHHHHHHHHHHhCCCcEE
Confidence 68999999999 79999999999999999999999999987653 2 3457899999999999999888876
No 11
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=95.58 E-value=0.31 Score=45.32 Aligned_cols=114 Identities=22% Similarity=0.229 Sum_probs=69.7
Q ss_pred eEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEE
Q 021144 134 VLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAW 213 (317)
Q Consensus 134 ~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~ 213 (317)
++|.+++ |||. |.+ +.++.... -.+.+.++|++.+-+|-- .|....++++.+.+ .||+
T Consensus 74 p~viaD~-~fg~-----------y~~--~~~~av~~---a~r~~~~aGa~aVkiEd~---~~~~~~I~al~~ag--ipV~ 131 (254)
T cd06557 74 ALVVADM-PFGS-----------YQT--SPEQALRN---AARLMKEAGADAVKLEGG---AEVAETIRALVDAG--IPVM 131 (254)
T ss_pred CeEEEeC-CCCc-----------ccC--CHHHHHHH---HHHHHHHhCCeEEEEcCc---HHHHHHHHHHHHcC--CCee
Confidence 4566777 7764 332 45554442 244455599999999963 57777788888765 8988
Q ss_pred EEEEEcCC------CcccCCCcH---HHHHHHhh--cCCCceEEEEcCCChhhhHHHHHHHHhhCCCcEEE
Q 021144 214 FSFNSKDG------INVVSGDSI---LECASIAD--SCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVII 273 (317)
Q Consensus 214 iSf~~~~~------~~l~~G~~l---~~a~~~~~--~~~~~~aiGvNC~~p~~~~~~l~~l~~~~~~pl~v 273 (317)
-.+-+... +....|.+- .++++.+. ...+++++=+-|... ++++.+.+..+.|++=
T Consensus 132 gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v~~----~~~~~i~~~v~iP~ig 198 (254)
T cd06557 132 GHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLECVPA----ELAKEITEALSIPTIG 198 (254)
T ss_pred ccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCCCH----HHHHHHHHhCCCCEEE
Confidence 55544322 222234333 33333322 135899999999943 3566666667788653
No 12
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=95.09 E-value=0.81 Score=43.11 Aligned_cols=105 Identities=12% Similarity=-0.005 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCC-CCEEEec------cCCCHHHHHHHHHHHHHh-CCCccEEEEEEEcCCCcccCCCcHHH
Q 021144 161 VSLETLKEFHRRRVLILANSG-ADLIAFE------TIPNKLEAKAYAELLEEE-GITIPAWFSFNSKDGINVVSGDSILE 232 (317)
Q Consensus 161 ~s~~el~~~h~~qi~~l~~~g-vD~l~~E------T~p~~~Ea~a~~~~~~~~-~~~~pv~iSf~~~~~~~l~~G~~l~~ 232 (317)
++.+.+ +.+++.+++.| ||.|++= ..-+.+|-+.+++.+.+. ..++|+++... +.+..+
T Consensus 18 iD~~~~----~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~---------~~~t~~ 84 (290)
T TIGR00683 18 INEKGL----RQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVG---------SVNLKE 84 (290)
T ss_pred cCHHHH----HHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecC---------CCCHHH
Confidence 565554 44677888899 9998553 334688888888765553 33579998773 334556
Q ss_pred HHHHhhc--CCCceEEEEc-----CCChhhhHHHHHHHHhhC-CCcEEEEeCCC
Q 021144 233 CASIADS--CEQVVAVGIN-----CTSPRFIHGLILSVRKVT-SKPVIIYPNSG 278 (317)
Q Consensus 233 a~~~~~~--~~~~~aiGvN-----C~~p~~~~~~l~~l~~~~-~~pl~vyPNaG 278 (317)
+++.++. ..+++++.+= +.+.+.+....+.+...+ +.|+++|-|-+
T Consensus 85 ~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~ 138 (290)
T TIGR00683 85 AVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPF 138 (290)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCcc
Confidence 6555432 2477777762 112355666666776555 79999997754
No 13
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=95.06 E-value=0.52 Score=44.05 Aligned_cols=114 Identities=23% Similarity=0.253 Sum_probs=66.6
Q ss_pred eEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEE
Q 021144 134 VLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAW 213 (317)
Q Consensus 134 ~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~ 213 (317)
++|.+++ |||. |+. +.++... .-++.+.++|++.+-+|-- .|....++++.+.+ +||+
T Consensus 77 p~vvaD~-pfg~-----------y~~--~~~~av~---~a~r~~~~aGa~aVkiEdg---~~~~~~I~al~~ag--IpV~ 134 (264)
T PRK00311 77 ALVVADM-PFGS-----------YQA--SPEQALR---NAGRLMKEAGAHAVKLEGG---EEVAETIKRLVERG--IPVM 134 (264)
T ss_pred CcEEEeC-CCCC-----------ccC--CHHHHHH---HHHHHHHHhCCeEEEEcCc---HHHHHHHHHHHHCC--CCEe
Confidence 3566777 7763 322 4444332 2344455599999999964 56666677777655 8998
Q ss_pred EEEEEcC------CCcccCCCcHH---HHHHHhh--cCCCceEEEEcCCChhhhHHHHHHHHhhCCCcEEE
Q 021144 214 FSFNSKD------GINVVSGDSIL---ECASIAD--SCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVII 273 (317)
Q Consensus 214 iSf~~~~------~~~l~~G~~l~---~a~~~~~--~~~~~~aiGvNC~~p~~~~~~l~~l~~~~~~pl~v 273 (317)
-.+-+.+ .+...-|.+-+ ++++.+. +..++++|=+-|...+ +.+.+.+..+.|++=
T Consensus 135 gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v~~~----~~~~i~~~l~iP~ig 201 (264)
T PRK00311 135 GHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVLECVPAE----LAKEITEALSIPTIG 201 (264)
T ss_pred eeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEEcCCCHH----HHHHHHHhCCCCEEE
Confidence 4443322 12222444433 3333322 1358999999999443 455566666788654
No 14
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=94.84 E-value=1.2 Score=41.31 Aligned_cols=105 Identities=26% Similarity=0.253 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEec-c-----CCCHHHHHHHHHHHHHh-CCCccEEEEEEEcCCCcccCCCcHHHH
Q 021144 161 VSLETLKEFHRRRVLILANSGADLIAFE-T-----IPNKLEAKAYAELLEEE-GITIPAWFSFNSKDGINVVSGDSILEC 233 (317)
Q Consensus 161 ~s~~el~~~h~~qi~~l~~~gvD~l~~E-T-----~p~~~Ea~a~~~~~~~~-~~~~pv~iSf~~~~~~~l~~G~~l~~a 233 (317)
++.+.+ +..++.+++.|||.|++= | .-+.+|-+.+++.+.+. +.+.|+++... +.+..++
T Consensus 15 iD~~~~----~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~---------~~~~~~~ 81 (281)
T cd00408 15 VDLDAL----RRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVG---------ANSTREA 81 (281)
T ss_pred cCHHHH----HHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecC---------CccHHHH
Confidence 666554 446778888999998743 2 22578888888776654 33589998773 3344555
Q ss_pred HHHhh--cCCCceEEEEcCC-----ChhhhHHHHHHHHhhCCCcEEEEeCCC
Q 021144 234 ASIAD--SCEQVVAVGINCT-----SPRFIHGLILSVRKVTSKPVIIYPNSG 278 (317)
Q Consensus 234 ~~~~~--~~~~~~aiGvNC~-----~p~~~~~~l~~l~~~~~~pl~vyPNaG 278 (317)
++.+. +..+++++.+--- +++.+....+.+.+.++.|+++|=+-+
T Consensus 82 i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~ 133 (281)
T cd00408 82 IELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPG 133 (281)
T ss_pred HHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECcc
Confidence 55442 2357888887652 235666677777777899999996653
No 15
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=94.32 E-value=0.76 Score=42.27 Aligned_cols=40 Identities=30% Similarity=0.376 Sum_probs=32.9
Q ss_pred HHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEE
Q 021144 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSF 216 (317)
Q Consensus 172 ~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf 216 (317)
+|++...++|+|++++++..+.+|++.+.+. .+.|+.+-.
T Consensus 164 ~Ra~ay~~AGAD~v~v~~~~~~~~~~~~~~~-----~~~Pl~~~~ 203 (243)
T cd00377 164 ERAKAYAEAGADGIFVEGLKDPEEIRAFAEA-----PDVPLNVNM 203 (243)
T ss_pred HHHHHHHHcCCCEEEeCCCCCHHHHHHHHhc-----CCCCEEEEe
Confidence 4889999999999999999999888877664 248887664
No 16
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=94.30 E-value=1.3 Score=41.98 Aligned_cols=106 Identities=22% Similarity=0.188 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEec-c-----CCCHHHHHHHHHHHHHh-CCCccEEEEEEEcCCCcccCCCcHHHH
Q 021144 161 VSLETLKEFHRRRVLILANSGADLIAFE-T-----IPNKLEAKAYAELLEEE-GITIPAWFSFNSKDGINVVSGDSILEC 233 (317)
Q Consensus 161 ~s~~el~~~h~~qi~~l~~~gvD~l~~E-T-----~p~~~Ea~a~~~~~~~~-~~~~pv~iSf~~~~~~~l~~G~~l~~a 233 (317)
++++. +++.++.+++.|||.|++= | .-+.+|=+.+++.+.+. +..+|+++.. .+.+..++
T Consensus 22 vD~~a----~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~---------g~~~t~ea 88 (299)
T COG0329 22 VDEEA----LRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGV---------GSNSTAEA 88 (299)
T ss_pred cCHHH----HHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEec---------CCCcHHHH
Confidence 66654 5557888999999977642 2 22577877777776664 3458998777 34455666
Q ss_pred HHHhhc--CCCceEEEEcCC-----ChhhhHHHHHHHHhhCCCcEEEEeCCCC
Q 021144 234 ASIADS--CEQVVAVGINCT-----SPRFIHGLILSVRKVTSKPVIIYPNSGE 279 (317)
Q Consensus 234 ~~~~~~--~~~~~aiGvNC~-----~p~~~~~~l~~l~~~~~~pl~vyPNaG~ 279 (317)
++.... ..+++++.+=.- ..+.+....+.+.+.++.|+++|=+-+.
T Consensus 89 i~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~ 141 (299)
T COG0329 89 IELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSR 141 (299)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 655432 357888777652 2366777778888888999999987653
No 17
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=94.14 E-value=0.61 Score=43.54 Aligned_cols=80 Identities=13% Similarity=0.152 Sum_probs=52.4
Q ss_pred CccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCCh------------hhhHHHHHHHHhhCCCcEEEEeC
Q 021144 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSP------------RFIHGLILSVRKVTSKPVIIYPN 276 (317)
Q Consensus 209 ~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~p------------~~~~~~l~~l~~~~~~pl~vyPN 276 (317)
+.|+++|+...+ -+.+.++++.+.+ .++++|-+||++| +.+.++++.+++..++|+++.-+
T Consensus 98 ~~pvi~si~g~~------~~~~~~~a~~~~~-~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~ 170 (289)
T cd02810 98 GQPLIASVGGSS------KEDYVELARKIER-AGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLS 170 (289)
T ss_pred CCeEEEEeccCC------HHHHHHHHHHHHH-hCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeC
Confidence 589999984321 1234455666654 4789999998755 34567788888877889988866
Q ss_pred CCCccccccccccccCCCChhhHHHHHHHHHHcc
Q 021144 277 SGETYNAELKKWVVSFSLHFFPLELILNPFASCR 310 (317)
Q Consensus 277 aG~~~d~~~~~w~~~~~~~~~~~~~~~~~w~~~~ 310 (317)
.+. +++++.+.++...++|
T Consensus 171 ~~~---------------~~~~~~~~a~~l~~~G 189 (289)
T cd02810 171 PYF---------------DLEDIVELAKAAERAG 189 (289)
T ss_pred CCC---------------CHHHHHHHHHHHHHcC
Confidence 532 2344556666666666
No 18
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=94.12 E-value=1.1 Score=42.54 Aligned_cols=104 Identities=15% Similarity=0.068 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEe-cc-----CCCHHHHHHHHHHHHH-hCCCccEEEEEEEcCCCcccCCCcHHHH
Q 021144 161 VSLETLKEFHRRRVLILANSGADLIAF-ET-----IPNKLEAKAYAELLEE-EGITIPAWFSFNSKDGINVVSGDSILEC 233 (317)
Q Consensus 161 ~s~~el~~~h~~qi~~l~~~gvD~l~~-ET-----~p~~~Ea~a~~~~~~~-~~~~~pv~iSf~~~~~~~l~~G~~l~~a 233 (317)
++.+.+ +.+++.+++.|||.|++ -| .-+.+|-+.+++.+.+ ...++|+++... + +..++
T Consensus 25 iD~~~l----~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~---------~-~t~~~ 90 (303)
T PRK03620 25 FDEAAY----REHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG---------G-GTAQA 90 (303)
T ss_pred cCHHHH----HHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC---------C-CHHHH
Confidence 676654 44778888899999865 33 2256777777776544 344689998762 1 34455
Q ss_pred HHHhhc--CCCceEEEEcCC-----ChhhhHHHHHHHHhhCCCcEEEEeCCC
Q 021144 234 ASIADS--CEQVVAVGINCT-----SPRFIHGLILSVRKVTSKPVIIYPNSG 278 (317)
Q Consensus 234 ~~~~~~--~~~~~aiGvNC~-----~p~~~~~~l~~l~~~~~~pl~vyPNaG 278 (317)
++.++. ..+++++.+--- +++.+....+.+.+.++.|+++|-+.|
T Consensus 91 i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~g 142 (303)
T PRK03620 91 IEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRDN 142 (303)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 544432 257787776431 235566677777777899999997766
No 19
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=94.08 E-value=2.3 Score=40.07 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEec-c-----CCCHHHHHHHHHHHHHh-CCCccEEEEEEEcCCCcccCCCcHHHH
Q 021144 161 VSLETLKEFHRRRVLILANSGADLIAFE-T-----IPNKLEAKAYAELLEEE-GITIPAWFSFNSKDGINVVSGDSILEC 233 (317)
Q Consensus 161 ~s~~el~~~h~~qi~~l~~~gvD~l~~E-T-----~p~~~Ea~a~~~~~~~~-~~~~pv~iSf~~~~~~~l~~G~~l~~a 233 (317)
++.+. ++..++.+++.|||.|++= | .-+.+|-+.+++.+.+. ..++|+++... .+..++
T Consensus 23 iD~~~----l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~----------~~t~~a 88 (296)
T TIGR03249 23 FDEAA----YRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG----------GNTSDA 88 (296)
T ss_pred cCHHH----HHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC----------ccHHHH
Confidence 66655 4557888889999998753 3 23677878888765543 33589997762 134555
Q ss_pred HHHhhc--CCCceEEEEcCC-----ChhhhHHHHHHHHhhCCCcEEEEeCCC
Q 021144 234 ASIADS--CEQVVAVGINCT-----SPRFIHGLILSVRKVTSKPVIIYPNSG 278 (317)
Q Consensus 234 ~~~~~~--~~~~~aiGvNC~-----~p~~~~~~l~~l~~~~~~pl~vyPNaG 278 (317)
++.++. ..+++++.+--- +.+.+....+.+...++.|+++|=+.|
T Consensus 89 i~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~g 140 (296)
T TIGR03249 89 IEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQRDN 140 (296)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEeCCC
Confidence 554432 257788777442 124455666677777789999996555
No 20
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=93.81 E-value=1.2 Score=41.56 Aligned_cols=104 Identities=20% Similarity=0.224 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEec-cC-----CCHHHHHHHHHHHHH-hCCCccEEEEEEEcCCCcccCCCcHHHH
Q 021144 161 VSLETLKEFHRRRVLILANSGADLIAFE-TI-----PNKLEAKAYAELLEE-EGITIPAWFSFNSKDGINVVSGDSILEC 233 (317)
Q Consensus 161 ~s~~el~~~h~~qi~~l~~~gvD~l~~E-T~-----p~~~Ea~a~~~~~~~-~~~~~pv~iSf~~~~~~~l~~G~~l~~a 233 (317)
++.+. +++.++.+++.|||.|++= |. -+.+|-+.+++.+.+ .+.+.|+++... +.+..++
T Consensus 19 id~~~----~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~---------~~st~~~ 85 (289)
T PF00701_consen 19 IDEDA----LKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG---------ANSTEEA 85 (289)
T ss_dssp B-HHH----HHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE---------SSSHHHH
T ss_pred cCHHH----HHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc---------chhHHHH
Confidence 56544 5557888889999998874 21 257777777777655 344689998874 3456666
Q ss_pred HHHhhc--CCCceEEEEcC-----CChhhhHHHHHHHHhhCCCcEEEEeCC
Q 021144 234 ASIADS--CEQVVAVGINC-----TSPRFIHGLILSVRKVTSKPVIIYPNS 277 (317)
Q Consensus 234 ~~~~~~--~~~~~aiGvNC-----~~p~~~~~~l~~l~~~~~~pl~vyPNa 277 (317)
++.+.. ..+++++.+-- .+++.+....+.+...++.|+++|-+-
T Consensus 86 i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P 136 (289)
T PF00701_consen 86 IELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNNP 136 (289)
T ss_dssp HHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBH
T ss_pred HHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEECC
Confidence 655432 25788877643 134667778888888899999999885
No 21
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=93.46 E-value=6.7 Score=36.69 Aligned_cols=86 Identities=20% Similarity=0.207 Sum_probs=48.5
Q ss_pred HHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHh-hcCCC-ceEEEEcCC-C
Q 021144 176 ILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA-DSCEQ-VVAVGINCT-S 252 (317)
Q Consensus 176 ~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~-~~~~~-~~aiGvNC~-~ 252 (317)
.+.+.|||.+++=-+| ++|...+...+++.+.+.=.+++- ++..+-++.+ ..+.+ +-.++.+=+ +
T Consensus 117 ~~~~~GvdGlivpDLP-~ee~~~~~~~~~~~gi~~I~lvaP-----------tt~~~rl~~i~~~a~GFiY~vs~~GvTG 184 (265)
T COG0159 117 RAKEAGVDGLLVPDLP-PEESDELLKAAEKHGIDPIFLVAP-----------TTPDERLKKIAEAASGFIYYVSRMGVTG 184 (265)
T ss_pred HHHHcCCCEEEeCCCC-hHHHHHHHHHHHHcCCcEEEEeCC-----------CCCHHHHHHHHHhCCCcEEEEecccccC
Confidence 4667999999998888 667777888888766321112121 1111222222 22222 233444332 2
Q ss_pred ---h--hhhHHHHHHHHhhCCCcEEE
Q 021144 253 ---P--RFIHGLILSVRKVTSKPVII 273 (317)
Q Consensus 253 ---p--~~~~~~l~~l~~~~~~pl~v 273 (317)
+ ..+..+++.+++.++.|+++
T Consensus 185 ~~~~~~~~~~~~v~~vr~~~~~Pv~v 210 (265)
T COG0159 185 ARNPVSADVKELVKRVRKYTDVPVLV 210 (265)
T ss_pred CCcccchhHHHHHHHHHHhcCCCeEE
Confidence 1 23677888888888888654
No 22
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=93.38 E-value=3.6 Score=35.35 Aligned_cols=96 Identities=9% Similarity=0.018 Sum_probs=55.5
Q ss_pred HHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHH-hCC-CccEEEEEEEcCCCcccCCCcHHHHHHH---hhcCCCce
Q 021144 170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELLEE-EGI-TIPAWFSFNSKDGINVVSGDSILECASI---ADSCEQVV 244 (317)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~-~~~-~~pv~iSf~~~~~~~l~~G~~l~~a~~~---~~~~~~~~ 244 (317)
.+..++.+.+.|+|.|.+-. .+++.+++ ... +.|+++........ ....++++. +.+ .+++
T Consensus 15 ~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~~~~~~~~v~~~v~~~~~~-----~~~~~~~~~a~~a~~-~Gad 80 (201)
T cd00945 15 IAKLCDEAIEYGFAAVCVNP--------GYVRLAADALAGSDVPVIVVVGFPTGL-----TTTEVKVAEVEEAID-LGAD 80 (201)
T ss_pred HHHHHHHHHHhCCcEEEECH--------HHHHHHHHHhCCCCCeEEEEecCCCCC-----CcHHHHHHHHHHHHH-cCCC
Confidence 44567778889999986553 22333322 222 47888776432211 123333333 333 4788
Q ss_pred EEEEcCCC-------hhhhHHHHHHHHhh--CCCcEEEEeCCCC
Q 021144 245 AVGINCTS-------PRFIHGLILSVRKV--TSKPVIIYPNSGE 279 (317)
Q Consensus 245 aiGvNC~~-------p~~~~~~l~~l~~~--~~~pl~vyPNaG~ 279 (317)
++.+-+.. ++.+...++.+.+. .+.|+++|.+-+.
T Consensus 81 ~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~ 124 (201)
T cd00945 81 EIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRG 124 (201)
T ss_pred EEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCC
Confidence 88876642 24455666666666 4789999998653
No 23
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=93.31 E-value=2.2 Score=40.61 Aligned_cols=105 Identities=16% Similarity=0.104 Sum_probs=69.3
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEe-cc-----CCCHHHHHHHHHHHHH-hCCCccEEEEEEEcCCCcccCCCcHHHH
Q 021144 161 VSLETLKEFHRRRVLILANSGADLIAF-ET-----IPNKLEAKAYAELLEE-EGITIPAWFSFNSKDGINVVSGDSILEC 233 (317)
Q Consensus 161 ~s~~el~~~h~~qi~~l~~~gvD~l~~-ET-----~p~~~Ea~a~~~~~~~-~~~~~pv~iSf~~~~~~~l~~G~~l~~a 233 (317)
++.+. ++.+++.+++.|||.|++ -| .-+.+|-+.+++.+.+ ...++||++... ..+..++
T Consensus 26 iD~~~----l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~---------~~~t~~a 92 (309)
T cd00952 26 VDLDE----TARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGAT---------TLNTRDT 92 (309)
T ss_pred cCHHH----HHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEec---------cCCHHHH
Confidence 56554 445788888899999875 22 2367888888876654 333589998773 2344556
Q ss_pred HHHhhc--CCCceEEEEcCC-----ChhhhHHHHHHHHhhC-CCcEEEEeCCC
Q 021144 234 ASIADS--CEQVVAVGINCT-----SPRFIHGLILSVRKVT-SKPVIIYPNSG 278 (317)
Q Consensus 234 ~~~~~~--~~~~~aiGvNC~-----~p~~~~~~l~~l~~~~-~~pl~vyPNaG 278 (317)
++.++. ..+++++.+-=- +.+.+....+.+.+.+ +.|+++|-|-+
T Consensus 93 i~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~ 145 (309)
T cd00952 93 IARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPE 145 (309)
T ss_pred HHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCch
Confidence 554432 257787776532 2356667777787778 69999996643
No 24
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=93.06 E-value=0.91 Score=42.34 Aligned_cols=104 Identities=18% Similarity=0.181 Sum_probs=68.2
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEec-c-----CCCHHHHHHHHHHHHHhC-CCccEEEEEEEcCCCcccCCCcHHHH
Q 021144 161 VSLETLKEFHRRRVLILANSGADLIAFE-T-----IPNKLEAKAYAELLEEEG-ITIPAWFSFNSKDGINVVSGDSILEC 233 (317)
Q Consensus 161 ~s~~el~~~h~~qi~~l~~~gvD~l~~E-T-----~p~~~Ea~a~~~~~~~~~-~~~pv~iSf~~~~~~~l~~G~~l~~a 233 (317)
++.+.++ ..++.+++.|||.|++= | .-+.+|-+.+++.+.+.. .+.|+++.. .+.+..++
T Consensus 18 iD~~~~~----~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv---------~~~~~~~~ 84 (284)
T cd00950 18 VDFDALE----RLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGT---------GSNNTAEA 84 (284)
T ss_pred cCHHHHH----HHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEecc---------CCccHHHH
Confidence 6665544 46778888999998754 3 347888888888766643 357888766 23456666
Q ss_pred HHHhhc--CCCceEEEEcCC-----ChhhhHHHHHHHHhhCCCcEEEEeCC
Q 021144 234 ASIADS--CEQVVAVGINCT-----SPRFIHGLILSVRKVTSKPVIIYPNS 277 (317)
Q Consensus 234 ~~~~~~--~~~~~aiGvNC~-----~p~~~~~~l~~l~~~~~~pl~vyPNa 277 (317)
++.++. ..++++|.+-=- +++.+....+.+.+.++.|+++|-|-
T Consensus 85 ~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P 135 (284)
T cd00950 85 IELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNVP 135 (284)
T ss_pred HHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEECh
Confidence 665542 246665554321 12556667777777778999999764
No 25
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=92.99 E-value=1.9 Score=40.61 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=41.5
Q ss_pred CccEEEEEEEcCCCcccCCCcHHHHHHHhhcC-CCceEEEEcCCCh-------------hhhHHHHHHHHhhCCCcEEEE
Q 021144 209 TIPAWFSFNSKDGINVVSGDSILECASIADSC-EQVVAVGINCTSP-------------RFIHGLILSVRKVTSKPVIIY 274 (317)
Q Consensus 209 ~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~-~~~~aiGvNC~~p-------------~~~~~~l~~l~~~~~~pl~vy 274 (317)
+.|+++|+.-.+ -+.+.++++.+.+. ..+++|=+||++| +.+..+++.+++..+.|++|.
T Consensus 90 ~~pl~~qi~g~~------~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vK 163 (300)
T TIGR01037 90 PTPLIASVYGSS------VEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAK 163 (300)
T ss_pred CCcEEEEeecCC------HHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 369999984211 12344556666543 2489999999854 456777888888778899888
Q ss_pred eC
Q 021144 275 PN 276 (317)
Q Consensus 275 PN 276 (317)
=+
T Consensus 164 i~ 165 (300)
T TIGR01037 164 LS 165 (300)
T ss_pred CC
Confidence 65
No 26
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=92.99 E-value=3.9 Score=38.32 Aligned_cols=105 Identities=19% Similarity=0.119 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHHHHHHhC-CCCEEEeccC------CCHHHHHHHHHHHHHh-CCCccEEEEEEEcCCCcccCCCcHHH
Q 021144 161 VSLETLKEFHRRRVLILANS-GADLIAFETI------PNKLEAKAYAELLEEE-GITIPAWFSFNSKDGINVVSGDSILE 232 (317)
Q Consensus 161 ~s~~el~~~h~~qi~~l~~~-gvD~l~~ET~------p~~~Ea~a~~~~~~~~-~~~~pv~iSf~~~~~~~l~~G~~l~~ 232 (317)
++.+. ++..++.+++. |||.|++--. -+.+|-+.+++.+.+. ...+|+++.. .+.+..+
T Consensus 18 iD~~~----~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv---------~~~~~~~ 84 (288)
T cd00954 18 INEDV----LRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHV---------GSLNLKE 84 (288)
T ss_pred CCHHH----HHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEecc---------CCCCHHH
Confidence 56544 44567788889 9999865421 2577777777766553 3357888766 2345566
Q ss_pred HHHHhhc--CCCceEEEEcCC-----ChhhhHHHHHHHHhhC-CCcEEEEeCCC
Q 021144 233 CASIADS--CEQVVAVGINCT-----SPRFIHGLILSVRKVT-SKPVIIYPNSG 278 (317)
Q Consensus 233 a~~~~~~--~~~~~aiGvNC~-----~p~~~~~~l~~l~~~~-~~pl~vyPNaG 278 (317)
+++.+.. ..+++++.+--- +.+.+....+.+.+.+ +.|+++|-|-+
T Consensus 85 ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~ 138 (288)
T cd00954 85 SQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIPA 138 (288)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCcc
Confidence 6655431 357788776442 2356677777777778 89999997653
No 27
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=92.91 E-value=2.7 Score=39.28 Aligned_cols=94 Identities=18% Similarity=0.237 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEE-------EEEEEcCCCcccCCCcHHHHHHHhh---
Q 021144 169 FHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAW-------FSFNSKDGINVVSGDSILECASIAD--- 238 (317)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~-------iSf~~~~~~~l~~G~~l~~a~~~~~--- 238 (317)
.++.-.+.+.++|+|.+=+|-- .|....++++.+.+ .||+ .+.... .+...-|.+-+++-+.++
T Consensus 94 a~~na~rl~~eaGa~aVkiEgg---~~~~~~i~~l~~~g--IpV~gHiGltPq~a~~~-ggy~~qgrt~~~a~~~i~~A~ 167 (263)
T TIGR00222 94 ALKNAARVMQETGANAVKLEGG---EWLVETVQMLTERG--VPVVGHLGLTPQSVNIL-GGYKVQGKDEEAAKKLLEDAL 167 (263)
T ss_pred HHHHHHHHHHHhCCeEEEEcCc---HhHHHHHHHHHHCC--CCEEEecCCCceeEeec-CCeeecCCCHHHHHHHHHHHH
Confidence 3334445556699999999963 55555667777765 9999 444432 223334666554433332
Q ss_pred --cCCCceEEEEcCCChhhhHHHHHHHHhhCCCcEE
Q 021144 239 --SCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVI 272 (317)
Q Consensus 239 --~~~~~~aiGvNC~~p~~~~~~l~~l~~~~~~pl~ 272 (317)
+..+++++=+-|..++ +.+.+.+..+.|++
T Consensus 168 a~e~AGA~~ivlE~vp~~----~a~~It~~l~iP~i 199 (263)
T TIGR00222 168 ALEEAGAQLLVLECVPVE----LAAKITEALAIPVI 199 (263)
T ss_pred HHHHcCCCEEEEcCCcHH----HHHHHHHhCCCCEE
Confidence 1358999999999743 45555555677854
No 28
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=92.90 E-value=2.4 Score=40.03 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=35.0
Q ss_pred HHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEE
Q 021144 170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNS 218 (317)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~ 218 (317)
--+|.+.+.++|+|++++|.+.+.+|++.+.+.+ ++|+++.++.
T Consensus 163 AI~Ra~ay~~AGAD~vfi~g~~~~e~i~~~~~~i-----~~Pl~~n~~~ 206 (285)
T TIGR02317 163 AIERAKAYVEAGADMIFPEALTSLEEFRQFAKAV-----KVPLLANMTE 206 (285)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhc-----CCCEEEEecc
Confidence 3458999999999999999999999988766543 2788877643
No 29
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=92.78 E-value=1.7 Score=41.30 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=35.6
Q ss_pred HHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEE
Q 021144 170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFN 217 (317)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~ 217 (317)
.-+|.+...++|+|+|++|.+.+.+|++.+.+.+ ++|+++.++
T Consensus 168 AI~Ra~aY~eAGAD~ifi~~~~~~~~i~~~~~~~-----~~Pl~~n~~ 210 (292)
T PRK11320 168 AIERAQAYVEAGADMIFPEAMTELEMYRRFADAV-----KVPILANIT 210 (292)
T ss_pred HHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHhc-----CCCEEEEec
Confidence 4458999999999999999999999998877644 379887775
No 30
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=92.67 E-value=3.3 Score=38.94 Aligned_cols=104 Identities=14% Similarity=0.055 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEec-c-----CCCHHHHHHHHHHHHH-hCCCccEEEEEEEcCCCcccCCCcHHHH
Q 021144 161 VSLETLKEFHRRRVLILANSGADLIAFE-T-----IPNKLEAKAYAELLEE-EGITIPAWFSFNSKDGINVVSGDSILEC 233 (317)
Q Consensus 161 ~s~~el~~~h~~qi~~l~~~gvD~l~~E-T-----~p~~~Ea~a~~~~~~~-~~~~~pv~iSf~~~~~~~l~~G~~l~~a 233 (317)
++.+.+ +..++.+++.|||.|++- | .-+.+|-+.+++.+.+ ...++||++...+ +..++
T Consensus 18 iD~~~l----~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~----------~t~~~ 83 (289)
T cd00951 18 FDEDAY----RAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY----------GTATA 83 (289)
T ss_pred cCHHHH----HHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC----------CHHHH
Confidence 676554 446778888999998654 3 2357777777776544 3346899988732 22344
Q ss_pred HHH---hhcCCCceEEEEcCC-----ChhhhHHHHHHHHhhCCCcEEEEeCCCC
Q 021144 234 ASI---ADSCEQVVAVGINCT-----SPRFIHGLILSVRKVTSKPVIIYPNSGE 279 (317)
Q Consensus 234 ~~~---~~~~~~~~aiGvNC~-----~p~~~~~~l~~l~~~~~~pl~vyPNaG~ 279 (317)
++. +.+ .+++++.+=-- +++.+....+.+.+.++.|+++|=+.|.
T Consensus 84 i~~a~~a~~-~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~ 136 (289)
T cd00951 84 IAYAQAAEK-AGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNRANA 136 (289)
T ss_pred HHHHHHHHH-hCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCC
Confidence 433 333 57888777442 1245666667777778899999976663
No 31
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=92.60 E-value=1.7 Score=41.94 Aligned_cols=93 Identities=14% Similarity=0.128 Sum_probs=62.3
Q ss_pred HHHHHHHHhCCC--CEEEec-cCCCHHHHHHHHHHHHHhCCCccEEEE-EEEcCCCcccCCCcHHHHHHHhhcCCCceEE
Q 021144 171 RRRVLILANSGA--DLIAFE-TIPNKLEAKAYAELLEEEGITIPAWFS-FNSKDGINVVSGDSILECASIADSCEQVVAV 246 (317)
Q Consensus 171 ~~qi~~l~~~gv--D~l~~E-T~p~~~Ea~a~~~~~~~~~~~~pv~iS-f~~~~~~~l~~G~~l~~a~~~~~~~~~~~ai 246 (317)
.++++.|+++|+ |+|.+- |.++...+..+++.+++..++.||++. +. +.+++....+ .+++++
T Consensus 99 ~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~-----------t~e~a~~l~~--aGad~i 165 (326)
T PRK05458 99 YDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG-----------TPEAVRELEN--AGADAT 165 (326)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC-----------CHHHHHHHHH--cCcCEE
Confidence 367889999965 999985 556677777778888876556788753 31 5666766555 367776
Q ss_pred ------EEcCCC--------hhhhHHHHHHHHhhCCCcEEEEeCCC
Q 021144 247 ------GINCTS--------PRFIHGLILSVRKVTSKPVIIYPNSG 278 (317)
Q Consensus 247 ------GvNC~~--------p~~~~~~l~~l~~~~~~pl~vyPNaG 278 (317)
|-||+. |.+-..++..+.+..+.|++ .++|
T Consensus 166 ~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVI--AdGG 209 (326)
T PRK05458 166 KVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPII--ADGG 209 (326)
T ss_pred EECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEE--EeCC
Confidence 667753 22244557777766677855 5555
No 32
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=92.50 E-value=6.8 Score=37.22 Aligned_cols=150 Identities=21% Similarity=0.243 Sum_probs=92.9
Q ss_pred HHHHHhhccccccccccccHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEeeC
Q 021144 62 LDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVG 141 (317)
Q Consensus 62 ~~Yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VagsiG 141 (317)
+..++=|+|+|.-=|++-.. + .++|+..++++-++.. .+-++.+.|++-
T Consensus 150 ~~Li~gG~D~iLiET~~D~l-----------~----~KaA~~a~~~~~~~~~----------------~~LPv~~s~Ti~ 198 (311)
T COG0646 150 EGLIDGGADLILIETIFDTL-----------N----AKAAVFAAREVFEELG----------------VRLPVMISGTIT 198 (311)
T ss_pred HHHHhCCCcEEEEehhccHH-----------H----HHHHHHHHHHHHHhcC----------------CcccEEEEEEEe
Confidence 34566699999988887432 1 2445556665544211 234899999999
Q ss_pred CCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCC
Q 021144 142 SYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDG 221 (317)
Q Consensus 142 P~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~ 221 (317)
..|..+. |. + +.+++. .|...|+|.+-+..-.-.++++..++-+.+. ...+||+.-+-.
T Consensus 199 ~sG~tl~------Gq-----~---~~a~~~----~l~~~~~~~vGlNCa~Gp~~m~~~l~~ls~~---~~~~vs~~PNAG 257 (311)
T COG0646 199 DSGRTLS------GQ-----T---IEAFLN----SLEHLGPDAVGLNCALGPDEMRPHLRELSRI---ADAFVSVYPNAG 257 (311)
T ss_pred cCceecC------CC-----c---HHHHHH----HhhccCCcEEeeccccCHHHHHHHHHHHHhc---cCceEEEeCCCC
Confidence 9887664 21 3 233333 4666889999999877788888877777654 356666643221
Q ss_pred ------CcccCCCcHHHH---HHHhhcCCCceEEEEcCC-ChhhhHHHHHHH
Q 021144 222 ------INVVSGDSILEC---ASIADSCEQVVAVGINCT-SPRFIHGLILSV 263 (317)
Q Consensus 222 ------~~l~~G~~l~~a---~~~~~~~~~~~aiGvNC~-~p~~~~~~l~~l 263 (317)
+++---.+++.. +..+.+...+-.||=-|. .|+|++.+.+.+
T Consensus 258 LP~~~g~~~~Y~~~p~~~a~~~~~f~~~g~vnIvGGCCGTTPeHIraia~~v 309 (311)
T COG0646 258 LPNAFGERAVYDLTPEYMAEALAEFAEEGGVNIVGGCCGTTPEHIRAIAEAV 309 (311)
T ss_pred CCcccCCccccCCCHHHHHHHHHHHHHhCCceeeccccCCCHHHHHHHHHHh
Confidence 111122344443 333333345888998885 799988776654
No 33
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=92.38 E-value=2.9 Score=39.53 Aligned_cols=44 Identities=20% Similarity=0.184 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCCEEEecc-CCCHHHHHHHHHHHHHhCCCccEEE
Q 021144 171 RRRVLILANSGADLIAFET-IPNKLEAKAYAELLEEEGITIPAWF 214 (317)
Q Consensus 171 ~~qi~~l~~~gvD~l~~ET-~p~~~Ea~a~~~~~~~~~~~~pv~i 214 (317)
-+|++...++|+|+++++. .++.+|++.+.+.++...+++|+++
T Consensus 172 i~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~ 216 (285)
T TIGR02320 172 LKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVI 216 (285)
T ss_pred HHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEE
Confidence 3478999999999999996 6899999998888765333578853
No 34
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=92.31 E-value=1.4 Score=41.28 Aligned_cols=104 Identities=14% Similarity=0.143 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEec-c-----CCCHHHHHHHHHHHHHh-CCCccEEEEEEEcCCCcccCCCcHHHH
Q 021144 161 VSLETLKEFHRRRVLILANSGADLIAFE-T-----IPNKLEAKAYAELLEEE-GITIPAWFSFNSKDGINVVSGDSILEC 233 (317)
Q Consensus 161 ~s~~el~~~h~~qi~~l~~~gvD~l~~E-T-----~p~~~Ea~a~~~~~~~~-~~~~pv~iSf~~~~~~~l~~G~~l~~a 233 (317)
++.+.+ +..++.+++.|||.|++= | .-+.+|-+.+++.+.+. ..++||++.. ...+..++
T Consensus 16 iD~~~~----~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv---------~~~s~~~~ 82 (285)
T TIGR00674 16 VDFAAL----EKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGT---------GSNATEEA 82 (285)
T ss_pred cCHHHH----HHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeC---------CCccHHHH
Confidence 666554 446778888999999763 3 33677777777765553 3358999776 23345666
Q ss_pred HHHhhc--CCCceEEEEcCC-----ChhhhHHHHHHHHhhCCCcEEEEeCC
Q 021144 234 ASIADS--CEQVVAVGINCT-----SPRFIHGLILSVRKVTSKPVIIYPNS 277 (317)
Q Consensus 234 ~~~~~~--~~~~~aiGvNC~-----~p~~~~~~l~~l~~~~~~pl~vyPNa 277 (317)
++.+.. ..+++++.+==- +++.+....+.+.+.++.|+++|-|-
T Consensus 83 i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P 133 (285)
T TIGR00674 83 ISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNVP 133 (285)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 655432 246776665321 23566667777777788999999664
No 35
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=92.22 E-value=2.2 Score=40.18 Aligned_cols=104 Identities=18% Similarity=0.143 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHHHHHh-CCCCEEEec-c-----CCCHHHHHHHHHHHHHh-CCCccEEEEEEEcCCCcccCCCcHHH
Q 021144 161 VSLETLKEFHRRRVLILAN-SGADLIAFE-T-----IPNKLEAKAYAELLEEE-GITIPAWFSFNSKDGINVVSGDSILE 232 (317)
Q Consensus 161 ~s~~el~~~h~~qi~~l~~-~gvD~l~~E-T-----~p~~~Ea~a~~~~~~~~-~~~~pv~iSf~~~~~~~l~~G~~l~~ 232 (317)
++.+.+ +..++.+++ .|||.|++- | .-+.+|-+.+++.+.+. ..++|+++... ..+..+
T Consensus 21 iD~~~~----~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg---------~~~t~~ 87 (293)
T PRK04147 21 IDEQGL----RRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVG---------SVNTAE 87 (293)
T ss_pred cCHHHH----HHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCC---------CCCHHH
Confidence 666554 447888888 999998653 2 22567877777765543 33578887662 235566
Q ss_pred HHHHhhc--CCCceEEEEcCC-----ChhhhHHHHHHHHhhCCCcEEEEeCC
Q 021144 233 CASIADS--CEQVVAVGINCT-----SPRFIHGLILSVRKVTSKPVIIYPNS 277 (317)
Q Consensus 233 a~~~~~~--~~~~~aiGvNC~-----~p~~~~~~l~~l~~~~~~pl~vyPNa 277 (317)
+++.++. ..+++++.+--- +++.+....+.+.+.++.|+++|-|-
T Consensus 88 ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P 139 (293)
T PRK04147 88 AQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNIP 139 (293)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 6655432 247777765542 12456666677777788999999664
No 36
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=92.07 E-value=3.9 Score=39.51 Aligned_cols=97 Identities=15% Similarity=0.154 Sum_probs=57.1
Q ss_pred HHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcC-CCceEEEEcCCChh-----------hhHHHHHHHHh
Q 021144 198 AYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSC-EQVVAVGINCTSPR-----------FIHGLILSVRK 265 (317)
Q Consensus 198 a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~-~~~~aiGvNC~~p~-----------~~~~~l~~l~~ 265 (317)
..++-+++...+.|+++|+..... ...+.+.++.++.+... ..++++-+|+++|. .+.++++.+++
T Consensus 126 ~~~~~l~~~~~~~pvivsI~~~~~--~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~ 203 (344)
T PRK05286 126 ALAERLKKAYRGIPLGINIGKNKD--TPLEDAVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKE 203 (344)
T ss_pred HHHHHHHHhcCCCcEEEEEecCCC--CCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHH
Confidence 334444433135899999965432 11233455544444321 24889999987653 46678888888
Q ss_pred hCC-----CcEEEEeCCCCccccccccccccCCCChhhHHHHHHHHHHccc
Q 021144 266 VTS-----KPVIIYPNSGETYNAELKKWVVSFSLHFFPLELILNPFASCRL 311 (317)
Q Consensus 266 ~~~-----~pl~vyPNaG~~~d~~~~~w~~~~~~~~~~~~~~~~~w~~~~~ 311 (317)
..+ +|++|.=..+ .+.++..+.++...+.|+
T Consensus 204 ~~~~~~~~~PV~vKlsp~---------------~~~~~~~~ia~~l~~~Ga 239 (344)
T PRK05286 204 AQAELHGYVPLLVKIAPD---------------LSDEELDDIADLALEHGI 239 (344)
T ss_pred HHhccccCCceEEEeCCC---------------CCHHHHHHHHHHHHHhCC
Confidence 765 8888776542 123345566666666664
No 37
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=91.91 E-value=8.9 Score=36.17 Aligned_cols=130 Identities=22% Similarity=0.124 Sum_probs=78.0
Q ss_pred HHhhccccccccccccHHHH-HhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEeeCC-
Q 021144 65 LDAGANIIITASYQATIQGF-EAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGS- 142 (317)
Q Consensus 65 l~AGAdiI~TnTy~as~~~l-~~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP- 142 (317)
+++|.+.|... +.+|.... ...+.+.+++.+....+++.|++. ...|.++|.-
T Consensus 89 ~~~g~~~v~i~-~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~------------------------g~~v~~~i~~~ 143 (287)
T PRK05692 89 LAAGADEVAVF-ASASEAFSQKNINCSIAESLERFEPVAEAAKQA------------------------GVRVRGYVSCV 143 (287)
T ss_pred HHcCCCEEEEE-EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc------------------------CCEEEEEEEEE
Confidence 46788876655 34444433 334677666666677777777642 1233333332
Q ss_pred CcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec-cCC--CHHHHHHHHHHHHHhCCCccEEEEEEEc
Q 021144 143 YGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFE-TIP--NKLEAKAYAELLEEEGITIPAWFSFNSK 219 (317)
Q Consensus 143 ~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~E-T~p--~~~Ea~a~~~~~~~~~~~~pv~iSf~~~ 219 (317)
++. +|.+. .+. +++.+.++.+.+.|+|.|.+- |.- +..++..+++.+++..++.| +++-+.
T Consensus 144 ~~~------~~~~~----~~~----~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~--i~~H~H 207 (287)
T PRK05692 144 LGC------PYEGE----VPP----EAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAER--LAGHFH 207 (287)
T ss_pred ecC------CCCCC----CCH----HHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCe--EEEEec
Confidence 111 22222 343 455566777888999999765 443 57788888888887532244 567665
Q ss_pred CCCcccCCCcHHHHHHHhhc
Q 021144 220 DGINVVSGDSILECASIADS 239 (317)
Q Consensus 220 ~~~~l~~G~~l~~a~~~~~~ 239 (317)
++ .|..+..++..+..
T Consensus 208 n~----~Gla~AN~laA~~a 223 (287)
T PRK05692 208 DT----YGQALANIYASLEE 223 (287)
T ss_pred CC----CCcHHHHHHHHHHh
Confidence 54 58888888877764
No 38
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=91.64 E-value=9.2 Score=36.33 Aligned_cols=44 Identities=23% Similarity=0.220 Sum_probs=35.2
Q ss_pred HHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEE
Q 021144 170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNS 218 (317)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~ 218 (317)
--+|++...++|+|+|++|.+.+.+|++.+++.+ +.|+++.+..
T Consensus 167 aI~Ra~aY~eAGAD~ifi~~~~~~~ei~~~~~~~-----~~P~~~nv~~ 210 (294)
T TIGR02319 167 AIRRSREYVAAGADCIFLEAMLDVEEMKRVRDEI-----DAPLLANMVE 210 (294)
T ss_pred HHHHHHHHHHhCCCEEEecCCCCHHHHHHHHHhc-----CCCeeEEEEe
Confidence 3458999999999999999999999988877643 3688766654
No 39
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=91.61 E-value=12 Score=39.16 Aligned_cols=156 Identities=19% Similarity=0.199 Sum_probs=93.5
Q ss_pred hHHHHHHHHH----HHHhhccccccccccccHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCC
Q 021144 54 PHLVRKVHLD----YLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRI 129 (317)
Q Consensus 54 Pe~V~~iH~~----Yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~ 129 (317)
.+.+++.|+. +.++|+|+|.--|+..- ++++ .+++.+++..
T Consensus 120 ~~~~~~~~~~~~~~l~~~gvD~l~~ET~~~~-----------~Ea~----a~~~a~~~~~-------------------- 164 (612)
T PRK08645 120 LEEIRREFREQIDALLEEGVDGLLLETFYDL-----------EELL----LALEAAREKT-------------------- 164 (612)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEccCCH-----------HHHH----HHHHHHHHhC--------------------
Confidence 4666666654 44778999998887643 2232 2333443321
Q ss_pred CCCCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCC
Q 021144 130 SSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGIT 209 (317)
Q Consensus 130 ~~~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~ 209 (317)
..+++|.-++-+-|. +.+| .+.+++.. .+.+.++|.+.+........+..+++.++... +
T Consensus 165 -~~p~~~Sf~~~~~g~-l~~G----------~~~~~~~~-------~~~~~~~~avGiNC~~~p~~~~~~l~~l~~~~-~ 224 (612)
T PRK08645 165 -DLPIIAQVAFHEDGV-TQNG----------TSLEEALK-------ELVAAGADVVGLNCGLGPYHMLEALERIPIPE-N 224 (612)
T ss_pred -CCcEEEEEEECCCCe-eCCC----------CCHHHHHH-------HHHhCCCCEEEecCCCCHHHHHHHHHHHHhcc-C
Confidence 147899988866543 3332 24444443 33346799999998877778888887776532 4
Q ss_pred ccEEEEEEEc----CCCcccCCCcH---HHHHHHhhcCCCceEEEEcCC-ChhhhHHHHHHHHh
Q 021144 210 IPAWFSFNSK----DGINVVSGDSI---LECASIADSCEQVVAVGINCT-SPRFIHGLILSVRK 265 (317)
Q Consensus 210 ~pv~iSf~~~----~~~~l~~G~~l---~~a~~~~~~~~~~~aiGvNC~-~p~~~~~~l~~l~~ 265 (317)
+|+.+--..- ++++.....+. .+.+....+ .++..||=-|. .|+++..+-+.+..
T Consensus 225 ~pl~vypNaG~~~~~~~~~~~~~~p~~~~~~~~~~~~-~Ga~iiGGCCgt~P~hI~~la~~l~~ 287 (612)
T PRK08645 225 APLSAYPNAGLPEYVDGRYVYSANPEYFAEYALEFVE-QGVRLIGGCCGTTPEHIRAMARALKG 287 (612)
T ss_pred ceEEEEECCCCCCCCCCccccCCCHHHHHHHHHHHHH-hCCCEEeEecCCCHHHHHHHHHHhcc
Confidence 6776543210 11111111233 333333333 48899999995 89999888777754
No 40
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.43 E-value=4.1 Score=40.41 Aligned_cols=81 Identities=9% Similarity=-0.024 Sum_probs=54.4
Q ss_pred CCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecc-CCCHHHHHHHHHHHHHhCCCc
Q 021144 132 RPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFET-IPNKLEAKAYAELLEEEGITI 210 (317)
Q Consensus 132 ~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET-~p~~~Ea~a~~~~~~~~~~~~ 210 (317)
.+.+|++++|+.. ...++++.|+++|||+|++-+ -++-..+...++.+++..++.
T Consensus 140 ~~l~v~aavg~~~------------------------~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~ 195 (404)
T PRK06843 140 NKLRVGAAVSIDI------------------------DTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNL 195 (404)
T ss_pred cCeEEEEEEeCCH------------------------HHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCC
Confidence 4678999998732 134578999999999999874 334455666677777765567
Q ss_pred cEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEE
Q 021144 211 PAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (317)
Q Consensus 211 pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGv 248 (317)
++++.. -.+.+++..+++ .++++|.+
T Consensus 196 ~vi~g~----------V~T~e~a~~l~~--aGaD~I~v 221 (404)
T PRK06843 196 DLIAGN----------IVTKEAALDLIS--VGADCLKV 221 (404)
T ss_pred cEEEEe----------cCCHHHHHHHHH--cCCCEEEE
Confidence 776543 345666666665 36777654
No 41
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=91.37 E-value=3.2 Score=39.17 Aligned_cols=105 Identities=17% Similarity=0.086 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEec-c-----CCCHHHHHHHHHHHHH-hCCCccEEEEEEEcCCCcccCCCcHHHH
Q 021144 161 VSLETLKEFHRRRVLILANSGADLIAFE-T-----IPNKLEAKAYAELLEE-EGITIPAWFSFNSKDGINVVSGDSILEC 233 (317)
Q Consensus 161 ~s~~el~~~h~~qi~~l~~~gvD~l~~E-T-----~p~~~Ea~a~~~~~~~-~~~~~pv~iSf~~~~~~~l~~G~~l~~a 233 (317)
++.+.++ ..++.+++.|||.|++= | .-+.+|-+.+++.+.+ ...+.||++... +.+..++
T Consensus 18 iD~~~l~----~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~---------~~~t~~a 84 (294)
T TIGR02313 18 IDEEALR----ELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTG---------ALNHDET 84 (294)
T ss_pred cCHHHHH----HHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECC---------cchHHHH
Confidence 6766554 46778888999988643 2 1256777777765443 333589987662 3445566
Q ss_pred HHHhhc--CCCceEEEEcCC-----ChhhhHHHHHHHHhhC-CCcEEEEeCCC
Q 021144 234 ASIADS--CEQVVAVGINCT-----SPRFIHGLILSVRKVT-SKPVIIYPNSG 278 (317)
Q Consensus 234 ~~~~~~--~~~~~aiGvNC~-----~p~~~~~~l~~l~~~~-~~pl~vyPNaG 278 (317)
++.++. ..+++++.+==- +.+.+....+.+.+.+ +.|+++|=|-+
T Consensus 85 i~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~ 137 (294)
T TIGR02313 85 LELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIPG 137 (294)
T ss_pred HHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCch
Confidence 555432 246666554321 2355666677777778 89999995543
No 42
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=91.21 E-value=5.1 Score=40.90 Aligned_cols=81 Identities=11% Similarity=0.231 Sum_probs=52.7
Q ss_pred CCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCC-CHHHHHHHHHHHHHhCCCc
Q 021144 132 RPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIP-NKLEAKAYAELLEEEGITI 210 (317)
Q Consensus 132 ~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p-~~~Ea~a~~~~~~~~~~~~ 210 (317)
.+.+|++++|+... ..+|++.|+++|+|+|++-+-. +-......++.+|+..++.
T Consensus 235 ~~l~vgaavg~~~~------------------------~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~ 290 (505)
T PLN02274 235 GKLLVGAAIGTRES------------------------DKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPEL 290 (505)
T ss_pred CCEEEEEEEcCCcc------------------------HHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCC
Confidence 46778888987421 3468999999999999998743 2223335666777754457
Q ss_pred cEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEE
Q 021144 211 PAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (317)
Q Consensus 211 pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGv 248 (317)
++++. +=.+.+++...++ .++++|-+
T Consensus 291 ~vi~g----------~v~t~e~a~~a~~--aGaD~i~v 316 (505)
T PLN02274 291 DVIGG----------NVVTMYQAQNLIQ--AGVDGLRV 316 (505)
T ss_pred cEEEe----------cCCCHHHHHHHHH--cCcCEEEE
Confidence 77642 1134566666665 47777744
No 43
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=91.20 E-value=2 Score=40.94 Aligned_cols=93 Identities=20% Similarity=0.239 Sum_probs=58.5
Q ss_pred hCCCCEEEeccCCCHHHHH---HHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCChh-
Q 021144 179 NSGADLIAFETIPNKLEAK---AYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPR- 254 (317)
Q Consensus 179 ~~gvD~l~~ET~p~~~Ea~---a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~p~- 254 (317)
+.|+|++.-|.+..-.=.. .....+.....+.|+++++... +-+.+.++++.+.+ .+.++|-+||.+|.
T Consensus 29 ~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~------~~~~~~~aa~~~~~-~G~d~IelN~gcP~~ 101 (319)
T TIGR00737 29 EYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGS------DPDTMAEAAKINEE-LGADIIDINMGCPVP 101 (319)
T ss_pred HHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCC------CHHHHHHHHHHHHh-CCCCEEEEECCCCHH
Confidence 4578999888886532111 1122233223358999888432 22345566666654 58999999998653
Q ss_pred ----------------hhHHHHHHHHhhCCCcEEEEeCCC
Q 021144 255 ----------------FIHGLILSVRKVTSKPVIIYPNSG 278 (317)
Q Consensus 255 ----------------~~~~~l~~l~~~~~~pl~vyPNaG 278 (317)
.+..+++.+++.++.|+.|+-..|
T Consensus 102 ~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g 141 (319)
T TIGR00737 102 KITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIG 141 (319)
T ss_pred HhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcc
Confidence 234566777777789999987655
No 44
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=90.96 E-value=3.8 Score=37.71 Aligned_cols=72 Identities=28% Similarity=0.237 Sum_probs=44.8
Q ss_pred eEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEE
Q 021144 134 VLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAW 213 (317)
Q Consensus 134 ~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~ 213 (317)
+.|.+=+|-+...+..-.-|.+.+ . +.+.+.+ ..+|++++.++|+|+|++|.+ +.++++.+.+. .++|+.
T Consensus 126 i~ViaRtd~~pq~~~~~gg~~~~~-~--~~~~~~~-ai~Ra~ay~~AGAd~i~~e~~-~~e~~~~i~~~-----~~~P~~ 195 (240)
T cd06556 126 VPVIAHTGLTPQSVNTSGGDEGQY-R--GDEAGEQ-LIADALAYAPAGADLIVMECV-PVELAKQITEA-----LAIPLA 195 (240)
T ss_pred CeEEEEeCCchhhhhccCCceeec-c--CHHHHHH-HHHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHh-----CCCCEE
Confidence 566676666443321111133322 2 3444444 556899999999999999987 78887776653 247876
Q ss_pred EE
Q 021144 214 FS 215 (317)
Q Consensus 214 iS 215 (317)
.-
T Consensus 196 ~~ 197 (240)
T cd06556 196 GI 197 (240)
T ss_pred EE
Confidence 53
No 45
>PLN02489 homocysteine S-methyltransferase
Probab=90.91 E-value=16 Score=35.27 Aligned_cols=153 Identities=14% Similarity=0.147 Sum_probs=88.5
Q ss_pred HHHHHHHHH----HHHhhccccccccccccHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCC
Q 021144 55 HLVRKVHLD----YLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRIS 130 (317)
Q Consensus 55 e~V~~iH~~----Yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~ 130 (317)
+.+++.|+. ++++|+|+|.-=|+..- .+++ .+++.+++.. .
T Consensus 163 ~e~~~~~~~qi~~l~~~gvD~i~~ET~~~l-----------~E~~----a~~~~~~~~~--------------------~ 207 (335)
T PLN02489 163 EKLKDFHRRRLQVLAEAGPDLIAFETIPNK-----------LEAQ----AYVELLEEEN--------------------I 207 (335)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeccCCh-----------HHHH----HHHHHHHHcC--------------------C
Confidence 667777763 44789998887776532 2222 2333333221 1
Q ss_pred CCCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCc
Q 021144 131 SRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITI 210 (317)
Q Consensus 131 ~~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~ 210 (317)
+.+++|.-++- -+..+.+| .+.+++.+.-. ...++|.|.+-.. ..+.+..+++.++... ++
T Consensus 208 ~~p~~iS~t~~-~~~~l~~G----------~~~~~~~~~~~------~~~~~~~iGiNC~-~p~~~~~~l~~l~~~~-~~ 268 (335)
T PLN02489 208 KIPAWISFNSK-DGVNVVSG----------DSLLECASIAD------SCKKVVAVGINCT-PPRFIHGLILSIRKVT-SK 268 (335)
T ss_pred CCeEEEEEEeC-CCCccCCC----------CcHHHHHHHHH------hcCCceEEEecCC-CHHHHHHHHHHHHhhc-CC
Confidence 24788888873 23334332 24444433221 1147999999986 7888888888887653 46
Q ss_pred cEEEEEEEcCCCcc----------cCCCc---HHHHHHHhhcCCCceEEEEcCC-ChhhhHHHHHHHHh
Q 021144 211 PAWFSFNSKDGINV----------VSGDS---ILECASIADSCEQVVAVGINCT-SPRFIHGLILSVRK 265 (317)
Q Consensus 211 pv~iSf~~~~~~~l----------~~G~~---l~~a~~~~~~~~~~~aiGvNC~-~p~~~~~~l~~l~~ 265 (317)
|+.+--. .|.. ..+.+ +.+.+....+ .++..||=-|. .|+++..+-+.++.
T Consensus 269 pl~vyPN---aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Ga~iIGGCCgt~P~hI~al~~~l~~ 333 (335)
T PLN02489 269 PIVVYPN---SGETYDGEAKEWVESTGVSDEDFVSYVNKWRD-AGASLIGGCCRTTPNTIRAISKALSE 333 (335)
T ss_pred cEEEECC---CCCCCCCccCcccCCCCCCHHHHHHHHHHHHH-CCCcEEeeCCCCCHHHHHHHHHHHhc
Confidence 7654322 1111 12223 3344444433 58899999995 89998887666643
No 46
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=90.87 E-value=15 Score=34.87 Aligned_cols=155 Identities=19% Similarity=0.155 Sum_probs=89.2
Q ss_pred ChHHHHHHHHH----HHHhhccccccccccccHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 021144 53 SPHLVRKVHLD----YLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGR 128 (317)
Q Consensus 53 ~Pe~V~~iH~~----Yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~ 128 (317)
..+.+++.|++ ++++|+|+|.--|+..-. +++ .+++.+++..
T Consensus 134 ~~~~~~~~~~~q~~~l~~~gvD~i~~ET~~~~~-----------E~~----~~~~~~~~~~------------------- 179 (304)
T PRK09485 134 SEEELQDFHRPRIEALAEAGADLLACETIPNLD-----------EAE----ALVELLKEEF------------------- 179 (304)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEeccCCHH-----------HHH----HHHHHHHHhc-------------------
Confidence 34667777653 447799999988887442 232 3333333221
Q ss_pred CCCCCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-CCCCEEEeccCCCHHHHHHHHHHHHHhC
Q 021144 129 ISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILAN-SGADLIAFETIPNKLEAKAYAELLEEEG 207 (317)
Q Consensus 129 ~~~~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~-~gvD~l~~ET~p~~~Ea~a~~~~~~~~~ 207 (317)
.+.+++|.-++-.-|. +.+| .+.+++.+ .+.+ .++|.|.+-.. ..+.+..+++-+++..
T Consensus 180 -~~~pv~is~~~~~~g~-l~~G----------~~~~~~~~-------~l~~~~~~~~iGiNC~-~p~~~~~~l~~~~~~~ 239 (304)
T PRK09485 180 -PGVPAWLSFTLRDGTH-ISDG----------TPLAEAAA-------LLAASPQVVAVGVNCT-APELVTAAIAALRAVT 239 (304)
T ss_pred -CCCcEEEEEEeCCCCc-CCCC----------CCHHHHHH-------HHhcCCCceEEEecCC-CHHHHHHHHHHHHhcc
Confidence 1348899988865543 3332 24444433 2223 35899999987 7877888887776543
Q ss_pred CCccEEEEEEE----cCCCc-ccCCC---cHHHHHHHhhcCCCceEEEEcCC-ChhhhHHHHHHH
Q 021144 208 ITIPAWFSFNS----KDGIN-VVSGD---SILECASIADSCEQVVAVGINCT-SPRFIHGLILSV 263 (317)
Q Consensus 208 ~~~pv~iSf~~----~~~~~-l~~G~---~l~~a~~~~~~~~~~~aiGvNC~-~p~~~~~~l~~l 263 (317)
+.|+.+--.- ...+. ..... .+.+.+..... .++..||=-|. .|+++..+-+.+
T Consensus 240 -~~pl~~~PNaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~iiGGCCGttP~hI~al~~~l 302 (304)
T PRK09485 240 -DKPLVVYPNSGEVYDAVTKTWHGPADDASLGELAPEWYA-AGARLIGGCCRTTPEDIAALAAAL 302 (304)
T ss_pred -CCcEEEECCCCCCCCCCCCcccCCCChHHHHHHHHHHHH-cCCeEEeeCCCCCHHHHHHHHHHh
Confidence 4665533221 00111 11111 23344444433 48999999995 899988876654
No 47
>PRK15063 isocitrate lyase; Provisional
Probab=90.86 E-value=4.7 Score=40.14 Aligned_cols=34 Identities=41% Similarity=0.407 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCCEEEecc-CCCHHHHHHHHHHHHH
Q 021144 171 RRRVLILANSGADLIAFET-IPNKLEAKAYAELLEE 205 (317)
Q Consensus 171 ~~qi~~l~~~gvD~l~~ET-~p~~~Ea~a~~~~~~~ 205 (317)
-+|..++.+ |+|+|++|| .|+++|++.+.+.+++
T Consensus 268 I~Ra~AYa~-GAD~iw~Et~~~d~ee~~~fa~~v~~ 302 (428)
T PRK15063 268 IARGLAYAP-YADLIWCETSTPDLEEARRFAEAIHA 302 (428)
T ss_pred HHHHHHHhc-CCCEEEeCCCCCCHHHHHHHHHhhcc
Confidence 347788888 999999998 9999999999988875
No 48
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=90.65 E-value=2.6 Score=35.66 Aligned_cols=103 Identities=19% Similarity=0.131 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhCCCCEEEeccCCCHHH-HH----HHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCC
Q 021144 168 EFHRRRVLILANSGADLIAFETIPNKLE-AK----AYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQ 242 (317)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~ET~p~~~E-a~----a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~ 242 (317)
+.+.+.++.+.+.|+|++.+++...-.. .. ..+..+.+.. +.|+++++.+.+.. ..+..++..+.. .+
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~a~~~~~-~g 84 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAET-DLPLGVQLAINDAA-----AAVDIAAAAARA-AG 84 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhc-CCcEEEEEccCCch-----hhhhHHHHHHHH-cC
Confidence 3455667778889999999887652211 11 1122233322 58999998765422 222222334443 47
Q ss_pred ceEEEEcCCCh---hhhHHHHHHHHhhC-CCcEEEEeCC
Q 021144 243 VVAVGINCTSP---RFIHGLILSVRKVT-SKPVIIYPNS 277 (317)
Q Consensus 243 ~~aiGvNC~~p---~~~~~~l~~l~~~~-~~pl~vyPNa 277 (317)
+++|-+|+..+ +.....++.+++.. +.|+++.-+.
T Consensus 85 ~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~ 123 (200)
T cd04722 85 ADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSP 123 (200)
T ss_pred CCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 88888988864 34667777777765 6777766654
No 49
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=90.60 E-value=1.3 Score=41.91 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=42.4
Q ss_pred CccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCChh----------------hhHHHHHHHHhhCCCcEE
Q 021144 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPR----------------FIHGLILSVRKVTSKPVI 272 (317)
Q Consensus 209 ~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~p~----------------~~~~~l~~l~~~~~~pl~ 272 (317)
+.|+++|+.... +-+.+.++++.+.+ .++++|-+||+.|. .+.++++.+++.+++|++
T Consensus 99 ~~p~i~si~G~~-----~~~~~~~~a~~~~~-~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~ 172 (299)
T cd02940 99 DKILIASIMCEY-----NKEDWTELAKLVEE-AGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVI 172 (299)
T ss_pred CCeEEEEecCCC-----CHHHHHHHHHHHHh-cCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeE
Confidence 579999985431 11345566666654 46899999997653 466777788877788988
Q ss_pred EEeC
Q 021144 273 IYPN 276 (317)
Q Consensus 273 vyPN 276 (317)
|.=-
T Consensus 173 vKl~ 176 (299)
T cd02940 173 AKLT 176 (299)
T ss_pred EECC
Confidence 8743
No 50
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=90.32 E-value=9 Score=36.99 Aligned_cols=119 Identities=17% Similarity=0.171 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEE
Q 021144 169 FHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (317)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGv 248 (317)
.-..|+..|.++|+|++-+ |+|+.++++++-+..+.. ++|++.-+.|+ ..-|+..+. .+++.+=|
T Consensus 35 atv~QI~~L~~aGceiVRv-avp~~~~A~al~~I~~~~--~iPlVADIHFd----------~~lAl~a~~--~g~dkiRI 99 (346)
T TIGR00612 35 STVAQIRALEEAGCDIVRV-TVPDRESAAAFEAIKEGT--NVPLVADIHFD----------YRLAALAMA--KGVAKVRI 99 (346)
T ss_pred HHHHHHHHHHHcCCCEEEE-cCCCHHHHHhHHHHHhCC--CCCEEEeeCCC----------cHHHHHHHH--hccCeEEE
Confidence 3456899999999999974 899999988877755543 59999888774 123455554 36788888
Q ss_pred cCC---ChhhhHHHHHHHHhhCCCcEEEEeCCCCccccccccccccCC-CChhhHHHHHHHHH
Q 021144 249 NCT---SPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVVSFS-LHFFPLELILNPFA 307 (317)
Q Consensus 249 NC~---~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~w~~~~~-~~~~~~~~~~~~w~ 307 (317)
|=. +.+.+..+++..++. +.|+=+=-|+|-.- +.....|+ .+|+.+.+.+.+++
T Consensus 100 NPGNig~~e~v~~vv~~ak~~-~ipIRIGVN~GSL~----~~~~~kyg~~t~eamveSAl~~v 157 (346)
T TIGR00612 100 NPGNIGFRERVRDVVEKARDH-GKAMRIGVNHGSLE----RRLLEKYGDATAEAMVQSALEEA 157 (346)
T ss_pred CCCCCCCHHHHHHHHHHHHHC-CCCEEEecCCCCCc----HHHHHHcCCCCHHHHHHHHHHHH
Confidence 885 357777887776664 78888888999531 12222332 57888888777665
No 51
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=90.19 E-value=12 Score=34.83 Aligned_cols=37 Identities=27% Similarity=0.322 Sum_probs=32.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCH
Q 021144 155 GDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNK 193 (317)
Q Consensus 155 g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~ 193 (317)
+.|.. +.+++.++-.+-++.|.++|+|.+++|.+.+.
T Consensus 18 p~~~~--~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~ 54 (254)
T PF03437_consen 18 PRYDG--SMEEIIERAVREAEALEEGGVDGIIVENMGDV 54 (254)
T ss_pred CCCCC--CHHHHHHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence 44544 88999999999999999999999999998765
No 52
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=90.01 E-value=7 Score=37.45 Aligned_cols=86 Identities=14% Similarity=0.121 Sum_probs=51.3
Q ss_pred CccEEEEEEEcCCCcccCCCcHHHHHHHhhcC-CCceEEEEcCCCh-----------hhhHHHHHHHHhhCC-----CcE
Q 021144 209 TIPAWFSFNSKDGINVVSGDSILECASIADSC-EQVVAVGINCTSP-----------RFIHGLILSVRKVTS-----KPV 271 (317)
Q Consensus 209 ~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~-~~~~aiGvNC~~p-----------~~~~~~l~~l~~~~~-----~pl 271 (317)
+.|+++|+...+...+ -...++.++.+... ..+++|-+|++.| +.+.++++.+++.++ +|+
T Consensus 128 ~~plivsi~g~~~~~~--~~~~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv 205 (327)
T cd04738 128 GGPLGVNIGKNKDTPL--EDAVEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPL 205 (327)
T ss_pred CCeEEEEEeCCCCCcc--cccHHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCe
Confidence 5899999965442211 11234443333221 2478999999766 356788888887764 898
Q ss_pred EEEeCCCCccccccccccccCCCChhhHHHHHHHHHHccc
Q 021144 272 IIYPNSGETYNAELKKWVVSFSLHFFPLELILNPFASCRL 311 (317)
Q Consensus 272 ~vyPNaG~~~d~~~~~w~~~~~~~~~~~~~~~~~w~~~~~ 311 (317)
+|.=..+ .+.++..+.++...++|.
T Consensus 206 ~vKl~~~---------------~~~~~~~~ia~~l~~aGa 230 (327)
T cd04738 206 LVKIAPD---------------LSDEELEDIADVALEHGV 230 (327)
T ss_pred EEEeCCC---------------CCHHHHHHHHHHHHHcCC
Confidence 8876432 112345566666666663
No 53
>PLN02417 dihydrodipicolinate synthase
Probab=89.95 E-value=3 Score=39.07 Aligned_cols=102 Identities=19% Similarity=0.045 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEec-cC-----CCHHHHHHHHHHHHHh-CCCccEEEEEEEcCCCcccCCCcHHHH
Q 021144 161 VSLETLKEFHRRRVLILANSGADLIAFE-TI-----PNKLEAKAYAELLEEE-GITIPAWFSFNSKDGINVVSGDSILEC 233 (317)
Q Consensus 161 ~s~~el~~~h~~qi~~l~~~gvD~l~~E-T~-----p~~~Ea~a~~~~~~~~-~~~~pv~iSf~~~~~~~l~~G~~l~~a 233 (317)
++.+. ++..++.+++.|||.|++- |. -+.+|-+.+++.+.+. ...+|+++.. ...+..++
T Consensus 19 iD~~~----~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv---------~~~~t~~~ 85 (280)
T PLN02417 19 FDLEA----YDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNT---------GSNSTREA 85 (280)
T ss_pred cCHHH----HHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEEC---------CCccHHHH
Confidence 56554 5557888888999998663 32 2577877777765543 3357988776 23455666
Q ss_pred HHHhhc--CCCceEEEEcC-----CChhhhHHHHHHHHhhCCCcEEEEeCC
Q 021144 234 ASIADS--CEQVVAVGINC-----TSPRFIHGLILSVRKVTSKPVIIYPNS 277 (317)
Q Consensus 234 ~~~~~~--~~~~~aiGvNC-----~~p~~~~~~l~~l~~~~~~pl~vyPNa 277 (317)
++.+.. ..+++++.+== .+.+.+....+.+.+.+ |+++|=|-
T Consensus 86 i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~~--pi~lYn~P 134 (280)
T PLN02417 86 IHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDMG--PTIIYNVP 134 (280)
T ss_pred HHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhhC--CEEEEECh
Confidence 665532 24677655521 12255666666666654 99999554
No 54
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=89.71 E-value=2.9 Score=39.16 Aligned_cols=104 Identities=16% Similarity=0.162 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEe-cc-----CCCHHHHHHHHHHHHHh-CCCccEEEEEEEcCCCcccCCCcHHHH
Q 021144 161 VSLETLKEFHRRRVLILANSGADLIAF-ET-----IPNKLEAKAYAELLEEE-GITIPAWFSFNSKDGINVVSGDSILEC 233 (317)
Q Consensus 161 ~s~~el~~~h~~qi~~l~~~gvD~l~~-ET-----~p~~~Ea~a~~~~~~~~-~~~~pv~iSf~~~~~~~l~~G~~l~~a 233 (317)
++.+.+ +..++.+++.|||.|++ -| .-+.+|=+.+++.+.+. ..++|+++... +.+..++
T Consensus 19 iD~~~l----~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~---------~~~~~~~ 85 (292)
T PRK03170 19 VDFAAL----RKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTG---------SNSTAEA 85 (292)
T ss_pred cCHHHH----HHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecC---------CchHHHH
Confidence 665554 44678888899999873 33 23678877888766654 33579887662 3345666
Q ss_pred HHHhhc--CCCceEEEEcC--C---ChhhhHHHHHHHHhhCCCcEEEEeCC
Q 021144 234 ASIADS--CEQVVAVGINC--T---SPRFIHGLILSVRKVTSKPVIIYPNS 277 (317)
Q Consensus 234 ~~~~~~--~~~~~aiGvNC--~---~p~~~~~~l~~l~~~~~~pl~vyPNa 277 (317)
++.++. ..+++++.+== . +++.+....+.+.+.++.|+++|-+-
T Consensus 86 i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~P 136 (292)
T PRK03170 86 IELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNVP 136 (292)
T ss_pred HHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 655432 24777766632 1 13556677777777788999999653
No 55
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=89.68 E-value=2.4 Score=38.05 Aligned_cols=91 Identities=19% Similarity=0.180 Sum_probs=56.4
Q ss_pred HHHHHHHhCCCCEEEeccC----CCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEE
Q 021144 172 RRVLILANSGADLIAFETI----PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVG 247 (317)
Q Consensus 172 ~qi~~l~~~gvD~l~~ET~----p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiG 247 (317)
++++.+.++|+|++++-.- |+..++..+++.+++. .+.|+++.. .+++++....+ .+++.++
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v-----------~t~ee~~~a~~--~G~d~i~ 144 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADC-----------STLEEGLAAQK--LGFDFIG 144 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeC-----------CCHHHHHHHHH--cCCCEEE
Confidence 4677788899998876421 2225667777778773 347776532 25666654433 4788888
Q ss_pred EcCC---C-----hhhhHHHHHHHHhhCCCcEEEEeCCC
Q 021144 248 INCT---S-----PRFIHGLILSVRKVTSKPVIIYPNSG 278 (317)
Q Consensus 248 vNC~---~-----p~~~~~~l~~l~~~~~~pl~vyPNaG 278 (317)
+|-. . ......+++++++..+.|+++ .+|
T Consensus 145 ~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia--~GG 181 (221)
T PRK01130 145 TTLSGYTEETKKPEEPDFALLKELLKAVGCPVIA--EGR 181 (221)
T ss_pred cCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEE--ECC
Confidence 7521 1 122346778888877888664 455
No 56
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=89.62 E-value=1.7 Score=41.79 Aligned_cols=74 Identities=19% Similarity=0.194 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCC-h-----------hhhHHHH
Q 021144 193 KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTS-P-----------RFIHGLI 260 (317)
Q Consensus 193 ~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~-p-----------~~~~~~l 260 (317)
+++....+..+++.. ++|+++|+...+ -....++++.+.+ .++++|-+||+. | +.+..++
T Consensus 86 ~d~~~~~i~~~~~~~-~~pvi~sI~g~~------~~e~~~~a~~~~~-agad~ielN~scpp~~~~~~g~~~~~~~~eil 157 (334)
T PRK07565 86 PEEYLELIRRAKEAV-DIPVIASLNGSS------AGGWVDYARQIEQ-AGADALELNIYYLPTDPDISGAEVEQRYLDIL 157 (334)
T ss_pred HHHHHHHHHHHHHhc-CCcEEEEeccCC------HHHHHHHHHHHHH-cCCCEEEEeCCCCCCCCCCccccHHHHHHHHH
Confidence 444444444444433 589999994321 1133456666654 478899998753 1 1255677
Q ss_pred HHHHhhCCCcEEEE
Q 021144 261 LSVRKVTSKPVIIY 274 (317)
Q Consensus 261 ~~l~~~~~~pl~vy 274 (317)
+.+++.+++|++++
T Consensus 158 ~~v~~~~~iPV~vK 171 (334)
T PRK07565 158 RAVKSAVSIPVAVK 171 (334)
T ss_pred HHHHhccCCcEEEE
Confidence 88888888999988
No 57
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=89.15 E-value=19 Score=33.58 Aligned_cols=100 Identities=13% Similarity=0.129 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEe-----c-cCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHH
Q 021144 161 VSLETLKEFHRRRVLILANSGADLIAF-----E-TIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECA 234 (317)
Q Consensus 161 ~s~~el~~~h~~qi~~l~~~gvD~l~~-----E-T~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~ 234 (317)
++.+.+. .+++.+.+.|||.|++ | ..-+.+|-+.+++.+.+.. .++++.. .+.+..+++
T Consensus 17 iD~~~~~----~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~--~~vi~gv---------g~~~~~~ai 81 (279)
T cd00953 17 IDKEKFK----KHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDIT--DKVIFQV---------GSLNLEESI 81 (279)
T ss_pred cCHHHHH----HHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHc--CCEEEEe---------CcCCHHHHH
Confidence 6665544 4677888899999876 3 2236788888888766654 2455443 124456666
Q ss_pred HHhhc--CCCceEEEEcC------CChhhhHHHHHHHHhhCCCcEEEEeCC
Q 021144 235 SIADS--CEQVVAVGINC------TSPRFIHGLILSVRKVTSKPVIIYPNS 277 (317)
Q Consensus 235 ~~~~~--~~~~~aiGvNC------~~p~~~~~~l~~l~~~~~~pl~vyPNa 277 (317)
+.+.. ..+++++.+=- .+++.+....+.+.+ +.|+++|=|-
T Consensus 82 ~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~--~lpv~iYn~P 130 (279)
T cd00953 82 ELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS--PYPTFIYNYP 130 (279)
T ss_pred HHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh--cCCEEEEeCc
Confidence 55532 25777777622 123455666667766 7999999553
No 58
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=89.07 E-value=17 Score=35.29 Aligned_cols=130 Identities=17% Similarity=0.080 Sum_probs=74.2
Q ss_pred HHhhccccccccccccHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEeeCC-
Q 021144 65 LDAGANIIITASYQATIQGFEA-KGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGS- 142 (317)
Q Consensus 65 l~AGAdiI~TnTy~as~~~l~~-~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP- 142 (317)
+++|++.|.... .+|...+++ .+.+.+++.+.+...+++|++. ...|.+.+..
T Consensus 131 ~~~g~~~v~i~~-s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~------------------------Gl~v~~~is~~ 185 (347)
T PLN02746 131 IAAGAKEVAVFA-SASESFSKSNINCSIEESLVRYREVALAAKKH------------------------SIPVRGYVSCV 185 (347)
T ss_pred HHcCcCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc------------------------CCeEEEEEEee
Confidence 355766544332 444444433 3667666666666777776642 1234333322
Q ss_pred CcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec-cCC--CHHHHHHHHHHHHHhCCCccEEEEEEEc
Q 021144 143 YGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFE-TIP--NKLEAKAYAELLEEEGITIPAWFSFNSK 219 (317)
Q Consensus 143 ~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~E-T~p--~~~Ea~a~~~~~~~~~~~~pv~iSf~~~ 219 (317)
+|. ||.+. .+.+.+. +.++.+.+.|+|-|.+= |+- +..++..+++.+++..+..| +.|-+.
T Consensus 186 fg~------p~~~r----~~~~~l~----~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~--i~~H~H 249 (347)
T PLN02746 186 VGC------PIEGP----VPPSKVA----YVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDK--LAVHFH 249 (347)
T ss_pred ecC------CccCC----CCHHHHH----HHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCCCe--EEEEEC
Confidence 111 23232 3544444 45666778999988664 443 57788888888886432223 566665
Q ss_pred CCCcccCCCcHHHHHHHhhc
Q 021144 220 DGINVVSGDSILECASIADS 239 (317)
Q Consensus 220 ~~~~l~~G~~l~~a~~~~~~ 239 (317)
++ .|..+..++..+..
T Consensus 250 nd----~GlA~AN~lAA~~a 265 (347)
T PLN02746 250 DT----YGQALANILVSLQM 265 (347)
T ss_pred CC----CChHHHHHHHHHHh
Confidence 54 47778877777764
No 59
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=89.06 E-value=19 Score=40.73 Aligned_cols=161 Identities=17% Similarity=0.225 Sum_probs=92.6
Q ss_pred HHHHHHHHH----HHHhhccccccccccccHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCC
Q 021144 55 HLVRKVHLD----YLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRIS 130 (317)
Q Consensus 55 e~V~~iH~~----Yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~ 130 (317)
|.+++.|++ ++++|+|+|.--|..... +++ +++..++++.... ..
T Consensus 144 del~~~y~eq~~~L~~~GvD~iliETi~d~~-----------Eak----Aal~a~~~~~~~~----------------~~ 192 (1178)
T TIGR02082 144 DELVDAYTEQAKGLLDGGVDLLLIETCFDTL-----------NAK----AALFAAETVFEEK----------------GR 192 (1178)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeccCCHH-----------HHH----HHHHHHHHHHhhc----------------CC
Confidence 556666654 456789999888877442 222 3444444432210 01
Q ss_pred CCCeEEEEee-CCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCC
Q 021144 131 SRPVLVAASV-GSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGIT 209 (317)
Q Consensus 131 ~~~~~Vagsi-GP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~ 209 (317)
+.+++|.+.+ -.-|..+. | .+.+++. ..+...++|.|.+-.-...+++..+++.+.+.. +
T Consensus 193 ~lPv~vS~~~~d~~Gr~~~------G-----~~~~~~~-------~~l~~~~~~avGlNCs~gP~~m~~~l~~l~~~~-~ 253 (1178)
T TIGR02082 193 ELPIMISGTIVDTSGRTLS------G-----QTIEAFL-------TSLEHAGIDMIGLNCALGPDEMRPHLKHLSEHA-E 253 (1178)
T ss_pred CCeEEEEEEEECCCCeeCC------C-----CcHHHHH-------HHHhcCCCCEEEeCCCCCHHHHHHHHHHHHHhc-C
Confidence 3478888554 44454332 2 2433332 233467999999999888899999998887653 4
Q ss_pred ccEEEEEEE--cCCCcccCCCcHHHHHHH---hhcCCCceEEEEcCC-ChhhhHHHHHHHHhh
Q 021144 210 IPAWFSFNS--KDGINVVSGDSILECASI---ADSCEQVVAVGINCT-SPRFIHGLILSVRKV 266 (317)
Q Consensus 210 ~pv~iSf~~--~~~~~l~~G~~l~~a~~~---~~~~~~~~aiGvNC~-~p~~~~~~l~~l~~~ 266 (317)
.|+++--.- ......-+ .+.++.+.. ..+..++..||=-|. .|+|+..+-+.+...
T Consensus 254 ~pi~vyPNAGlP~~~~~yd-~~p~~~a~~~~~~~~~ggv~IIGGCCGTtPeHI~ala~~l~~~ 315 (1178)
T TIGR02082 254 AYVSCHPNAGLPNAFGEYD-LTPDELAKALADFAAEGGLNIVGGCCGTTPDHIRAIAEAVKNI 315 (1178)
T ss_pred ceEEEEeCCCCCCCCCccc-CCHHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhhcC
Confidence 565542211 00000112 233333333 333346899999995 899998888777653
No 60
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=89.00 E-value=4 Score=39.65 Aligned_cols=133 Identities=24% Similarity=0.280 Sum_probs=81.5
Q ss_pred HHHhhccccccc-c-ccccHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEeeC
Q 021144 64 YLDAGANIIITA-S-YQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVG 141 (317)
Q Consensus 64 Yl~AGAdiI~Tn-T-y~as~~~l~~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VagsiG 141 (317)
=+++|||.|-.- + |.+.... ..++.++ ++.++++|+++ +.+++|+...=
T Consensus 22 ai~~GADaVY~G~~~~~~R~~a---~nfs~~~----l~e~i~~ah~~----------------------gkk~~V~~N~~ 72 (347)
T COG0826 22 AIAAGADAVYIGEKEFGLRRRA---LNFSVED----LAEAVELAHSA----------------------GKKVYVAVNTL 72 (347)
T ss_pred HHHcCCCEEEeCCccccccccc---ccCCHHH----HHHHHHHHHHc----------------------CCeEEEEeccc
Confidence 367899977543 3 4433222 2456443 66777777643 35788887544
Q ss_pred CCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCC
Q 021144 142 SYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDG 221 (317)
Q Consensus 142 P~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~ 221 (317)
+... ..+. ..+.++.|.+.|||.|++= ++ +++.++++.++++|+.+|....-.
T Consensus 73 ~~~~----------------~~~~----~~~~l~~l~e~GvDaviv~---Dp----g~i~l~~e~~p~l~ih~S~q~~v~ 125 (347)
T COG0826 73 LHND----------------ELET----LERYLDRLVELGVDAVIVA---DP----GLIMLARERGPDLPIHVSTQANVT 125 (347)
T ss_pred cccc----------------hhhH----HHHHHHHHHHcCCCEEEEc---CH----HHHHHHHHhCCCCcEEEeeeEecC
Confidence 4321 1122 3446777889999999854 33 677788888889999999876421
Q ss_pred -----------C----cccCCCcHHHHHHHhhcCC----CceEEEEcCCC
Q 021144 222 -----------I----NVVSGDSILECASIADSCE----QVVAVGINCTS 252 (317)
Q Consensus 222 -----------~----~l~~G~~l~~a~~~~~~~~----~~~aiGvNC~~ 252 (317)
| -+..=.++.+..+...+.+ .+.+.|--|..
T Consensus 126 N~~~~~f~~~~G~~rvVl~rEls~~ei~~i~~~~~~veiEvfVhGalcia 175 (347)
T COG0826 126 NAETAKFWKELGAKRVVLPRELSLEEIKEIKEQTPDVEIEVFVHGALCIA 175 (347)
T ss_pred CHHHHHHHHHcCCEEEEeCccCCHHHHHHHHHhCCCceEEEEEecchhhc
Confidence 1 1333346666666665432 26677777753
No 61
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=88.74 E-value=17 Score=35.15 Aligned_cols=115 Identities=17% Similarity=0.233 Sum_probs=65.7
Q ss_pred CeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccE
Q 021144 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPA 212 (317)
Q Consensus 133 ~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv 212 (317)
..+|.+++ |+|. |.. +.+++.+ .-.+.+.++|+|.+=+|--. .+...+++.+-+.+ +||
T Consensus 96 ~a~vVaDm-PfgS-----------Y~~--s~e~av~---nA~rl~~eaGa~aVKlEGg~--~~~~~~I~~l~~~G--IPV 154 (332)
T PLN02424 96 RPLLVGDL-PFGS-----------YES--STDQAVE---SAVRMLKEGGMDAVKLEGGS--PSRVTAAKAIVEAG--IAV 154 (332)
T ss_pred CCEEEeCC-CCCC-----------CCC--CHHHHHH---HHHHHHHHhCCcEEEECCCc--HHHHHHHHHHHHcC--CCE
Confidence 56777777 4543 432 5555443 33444567999999999642 33334444454555 999
Q ss_pred EEEEEEcCC------CcccCCCcHHHHHHHhh-----cCCCceEEEEcCCChhhhHHHHHHHHhhCCCcEE
Q 021144 213 WFSFNSKDG------INVVSGDSILECASIAD-----SCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVI 272 (317)
Q Consensus 213 ~iSf~~~~~------~~l~~G~~l~~a~~~~~-----~~~~~~aiGvNC~~p~~~~~~l~~l~~~~~~pl~ 272 (317)
+-.+-+.+. |.=..|.+-+++.+.++ +..++++|=+-|...+ +.+.+.+..+.|.|
T Consensus 155 ~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ivLE~Vp~~----la~~It~~l~IPtI 221 (332)
T PLN02424 155 MGHVGLTPQAISVLGGFRPQGRTAESAVKVVETALALQEAGCFAVVLECVPAP----VAAAITSALQIPTI 221 (332)
T ss_pred EEeecccceeehhhcCccccCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcHH----HHHHHHHhCCCCEE
Confidence 944433221 21124555544433332 1358899999999644 45555666677754
No 62
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=88.53 E-value=21 Score=33.12 Aligned_cols=89 Identities=18% Similarity=0.245 Sum_probs=57.2
Q ss_pred HHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCC-ceEEEEcC-C
Q 021144 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQ-VVAVGINC-T 251 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~-~~aiGvNC-~ 251 (317)
++.+.++|||.+++=-.|. +|....++.+++.+ +..+.-+ ...++.+.....+....+ +-.+.+|= +
T Consensus 108 ~~~~~~aGvdgviipDlp~-ee~~~~~~~~~~~g--l~~i~lv--------~P~T~~eri~~i~~~~~gfiy~vs~~G~T 176 (256)
T TIGR00262 108 YAKCKEVGVDGVLVADLPL-EESGDLVEAAKKHG--VKPIFLV--------APNADDERLKQIAEKSQGFVYLVSRAGVT 176 (256)
T ss_pred HHHHHHcCCCEEEECCCCh-HHHHHHHHHHHHCC--CcEEEEE--------CCCCCHHHHHHHHHhCCCCEEEEECCCCC
Confidence 5567889999999887774 78888888899876 4443333 134455554444444333 33445552 2
Q ss_pred C-----hhhhHHHHHHHHhhCCCcEEE
Q 021144 252 S-----PRFIHGLILSVRKVTSKPVII 273 (317)
Q Consensus 252 ~-----p~~~~~~l~~l~~~~~~pl~v 273 (317)
+ +..+...++.+++.++.|+.|
T Consensus 177 G~~~~~~~~~~~~i~~lr~~~~~pi~v 203 (256)
T TIGR00262 177 GARNRAASALNELVKRLKAYSAKPVLV 203 (256)
T ss_pred CCcccCChhHHHHHHHHHhhcCCCEEE
Confidence 2 245778888888888888665
No 63
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=88.48 E-value=6.2 Score=35.40 Aligned_cols=101 Identities=23% Similarity=0.173 Sum_probs=59.2
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCccc------CCCcHHHHHHHhhcCCCceEE
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVV------SGDSILECASIADSCEQVVAV 246 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~------~G~~l~~a~~~~~~~~~~~ai 246 (317)
+++.+.+.|+|.+++-|.. +.+...+.+++++.+ ..++++|+.++...... ...++.+.++.+.+ .+++.+
T Consensus 87 ~~~~~~~~Gad~vvigs~~-l~dp~~~~~i~~~~g-~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ga~~i 163 (234)
T cd04732 87 DIERLLDLGVSRVIIGTAA-VKNPELVKELLKEYG-GERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEE-LGVKAI 163 (234)
T ss_pred HHHHHHHcCCCEEEECchH-HhChHHHHHHHHHcC-CceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHH-cCCCEE
Confidence 3444556899999887654 344445555566654 34888898776532221 24456667776654 355555
Q ss_pred EEcC---CC--hhhhHHHHHHHHhhCCCcEEEEeCCC
Q 021144 247 GINC---TS--PRFIHGLILSVRKVTSKPVIIYPNSG 278 (317)
Q Consensus 247 GvNC---~~--p~~~~~~l~~l~~~~~~pl~vyPNaG 278 (317)
-+.. .+ ...-..+++++.+.++.|++ .|+|
T Consensus 164 ii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi--~~GG 198 (234)
T cd04732 164 IYTDISRDGTLSGPNFELYKELAAATGIPVI--ASGG 198 (234)
T ss_pred EEEeecCCCccCCCCHHHHHHHHHhcCCCEE--EecC
Confidence 4442 11 11224677888877788854 4555
No 64
>PRK12677 xylose isomerase; Provisional
Probab=88.30 E-value=25 Score=34.58 Aligned_cols=87 Identities=16% Similarity=0.184 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHHHHHh----CC--CCEEEeccCCCH-------HHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCC
Q 021144 161 VSLETLKEFHRRRVLILAN----SG--ADLIAFETIPNK-------LEAKAYAELLEEEGITIPAWFSFNSKDGINVVSG 227 (317)
Q Consensus 161 ~s~~el~~~h~~qi~~l~~----~g--vD~l~~ET~p~~-------~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G 227 (317)
.+.++..+.+++-++.+.+ .| |. |++|..|.. .....++.++++.+ .|-.+.++++-.....-|
T Consensus 146 ~d~~~a~~~~~eaL~~l~~~A~~~G~gV~-laIEpkp~ep~~~~~l~t~~~al~li~~lg--~~~~vGv~lD~gH~~m~g 222 (384)
T PRK12677 146 KDVRAALDRYREAIDLLAAYVKDQGYDLR-FALEPKPNEPRGDILLPTVGHALAFIATLE--HPEMVGLNPEVGHEQMAG 222 (384)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCcE-EEEccCCCCCCCCeeeCCHHHHHHHHHHhC--CCccEEEeeechHHHhcC
Confidence 4667777777766666543 33 65 677987541 22333444455544 343445555444445678
Q ss_pred CcHHHHHHHhhcCCCceEEEEcC
Q 021144 228 DSILECASIADSCEQVVAVGINC 250 (317)
Q Consensus 228 ~~l~~a~~~~~~~~~~~aiGvNC 250 (317)
+++.+.+........+..|=+|=
T Consensus 223 ~n~~~~i~~~l~~~kL~HvHlnD 245 (384)
T PRK12677 223 LNFTHGIAQALWAGKLFHIDLNG 245 (384)
T ss_pred CCHHHHHHHHHhCCcEEEEEecC
Confidence 88887775543223455666663
No 65
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=88.17 E-value=7.8 Score=34.75 Aligned_cols=101 Identities=22% Similarity=0.170 Sum_probs=55.8
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcc------cCCCcHHHHHHHhhcCCCceE-
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINV------VSGDSILECASIADSCEQVVA- 245 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l------~~G~~l~~a~~~~~~~~~~~a- 245 (317)
+++.+.+.|+|.+++-|..- .+...+.+++++.+ ..++++|+.++.+.-. ..+.++.+.++.+.+ .+++.
T Consensus 86 d~~~~~~~Ga~~vvlgs~~l-~d~~~~~~~~~~~g-~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~-~g~~~i 162 (230)
T TIGR00007 86 DVEKLLDLGVDRVIIGTAAV-ENPDLVKELLKEYG-PERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEE-LGLEGI 162 (230)
T ss_pred HHHHHHHcCCCEEEEChHHh-hCHHHHHHHHHHhC-CCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHh-CCCCEE
Confidence 34556668999888765432 23344555666654 3568888887643111 123455667766654 34443
Q ss_pred --EEEcCCCh--hhhHHHHHHHHhhCCCcEEEEeCCC
Q 021144 246 --VGINCTSP--RFIHGLILSVRKVTSKPVIIYPNSG 278 (317)
Q Consensus 246 --iGvNC~~p--~~~~~~l~~l~~~~~~pl~vyPNaG 278 (317)
..++..+. ..-..+++++.+..+.|+ ..++|
T Consensus 163 i~~~~~~~g~~~g~~~~~i~~i~~~~~ipv--ia~GG 197 (230)
T TIGR00007 163 IYTDISRDGTLSGPNFELTKELVKAVNVPV--IASGG 197 (230)
T ss_pred EEEeecCCCCcCCCCHHHHHHHHHhCCCCE--EEeCC
Confidence 33444221 112456777777667774 45555
No 66
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=88.15 E-value=4.8 Score=36.02 Aligned_cols=93 Identities=22% Similarity=0.219 Sum_probs=57.9
Q ss_pred HHHHHHHHhCCCCEEEeccC----CCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEE
Q 021144 171 RRRVLILANSGADLIAFETI----PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAV 246 (317)
Q Consensus 171 ~~qi~~l~~~gvD~l~~ET~----p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~ai 246 (317)
.++++.+.++|+|++++-.- |+-.+...+++.+++.+ ++|+++.+ .+++++....+ .+++.+
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v-----------~t~~ea~~a~~--~G~d~i 147 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADI-----------STLEEALNAAK--LGFDII 147 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEEC-----------CCHHHHHHHHH--cCCCEE
Confidence 34788899999998877321 22235666777777766 57777643 24566655444 478888
Q ss_pred EEc-CC-------ChhhhHHHHHHHHhhCCCcEEEEeCCCC
Q 021144 247 GIN-CT-------SPRFIHGLILSVRKVTSKPVIIYPNSGE 279 (317)
Q Consensus 247 GvN-C~-------~p~~~~~~l~~l~~~~~~pl~vyPNaG~ 279 (317)
++| .. ........++.+++..+.|++ +++|-
T Consensus 148 ~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvi--a~GGI 186 (219)
T cd04729 148 GTTLSGYTEETAKTEDPDFELLKELRKALGIPVI--AEGRI 186 (219)
T ss_pred EccCccccccccCCCCCCHHHHHHHHHhcCCCEE--EeCCC
Confidence 774 21 011223677788777777865 45653
No 67
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=88.06 E-value=27 Score=33.86 Aligned_cols=190 Identities=16% Similarity=0.186 Sum_probs=101.9
Q ss_pred ccCCChHHHHHHHHHHHHhhcccccccccc--ccHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 021144 49 CLVSSPHLVRKVHLDYLDAGANIIITASYQ--ATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGS 126 (317)
Q Consensus 49 ~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~--as~~~l~~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~ 126 (317)
+.++.++.+.++-+..-++|++++..-.|- .|+.++ .|+. .++.++-+++++++
T Consensus 101 CsiEs~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf--~G~g--------~~gL~~L~~~~~~~-------------- 156 (335)
T PRK08673 101 CSVESEEQILEIARAVKEAGAQILRGGAFKPRTSPYSF--QGLG--------EEGLKLLAEAREET-------------- 156 (335)
T ss_pred CccCCHHHHHHHHHHHHHhchhhccCcEecCCCCCccc--cccc--------HHHHHHHHHHHHHc--------------
Confidence 357899999999999999999999877773 333333 2333 34444555555432
Q ss_pred CCCCCCCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecc--CCCHHHHHHHHHHHH
Q 021144 127 GRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFET--IPNKLEAKAYAELLE 204 (317)
Q Consensus 127 ~~~~~~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET--~p~~~Ea~a~~~~~~ 204 (317)
+ ..|+-+ | .+. ++++.+.+. +|++-+-. +.+.. .++.+.
T Consensus 157 ----G--l~v~te--v------------------~d~--------~~~~~l~~~-vd~lqIgAr~~~N~~----LL~~va 197 (335)
T PRK08673 157 ----G--LPIVTE--V------------------MDP--------RDVELVAEY-VDILQIGARNMQNFD----LLKEVG 197 (335)
T ss_pred ----C--CcEEEe--e------------------CCH--------HHHHHHHHh-CCeEEECcccccCHH----HHHHHH
Confidence 1 111110 0 111 234455544 77776653 33432 233333
Q ss_pred HhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcC-C--C-h----hhhHHHHHHHHhhCCCcEEEEeC
Q 021144 205 EEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC-T--S-P----RFIHGLILSVRKVTSKPVIIYPN 276 (317)
Q Consensus 205 ~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC-~--~-p----~~~~~~l~~l~~~~~~pl~vyPN 276 (317)
++ ++||+++= |.-.+=+.+..+++.+....+...+.+-| + - + ..-...+..+++.+..|++++|+
T Consensus 198 ~~--~kPViLk~-----G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~~lPVi~d~s 270 (335)
T PRK08673 198 KT--NKPVLLKR-----GMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLTHLPVIVDPS 270 (335)
T ss_pred cC--CCcEEEeC-----CCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhcCCCEEEeCC
Confidence 33 48888653 11101112444565665434455666776 2 1 1 12244556677667788888887
Q ss_pred CCCc----------------cc--------cccccccc-cCCCChhhHHHHHHHHHH
Q 021144 277 SGET----------------YN--------AELKKWVV-SFSLHFFPLELILNPFAS 308 (317)
Q Consensus 277 aG~~----------------~d--------~~~~~w~~-~~~~~~~~~~~~~~~w~~ 308 (317)
-+.- -| ...+.|.+ ...++|++|.+.+.+..+
T Consensus 271 H~~G~~~~v~~~a~AAvA~GAdGliIE~H~~pd~alsD~~~sl~p~e~~~lv~~i~~ 327 (335)
T PRK08673 271 HATGKRDLVEPLALAAVAAGADGLIVEVHPDPEKALSDGPQSLTPEEFEELMKKLRA 327 (335)
T ss_pred CCCccccchHHHHHHHHHhCCCEEEEEecCCcccCCCcchhcCCHHHHHHHHHHHHH
Confidence 5311 01 11234533 235788999888776543
No 68
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=88.05 E-value=6.5 Score=36.83 Aligned_cols=61 Identities=21% Similarity=0.306 Sum_probs=42.2
Q ss_pred CccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCCh-------------hhhHHHHHHHHhhCCCcEEEEe
Q 021144 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSP-------------RFIHGLILSVRKVTSKPVIIYP 275 (317)
Q Consensus 209 ~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~p-------------~~~~~~l~~l~~~~~~pl~vyP 275 (317)
+.|+++|+...+ -+.+.+++..+.+ .++++|=+||++| +.+.++++.+++..+.|+++.=
T Consensus 89 ~~p~ivsi~g~~------~~~~~~~a~~~~~-~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl 161 (296)
T cd04740 89 GTPVIASIAGST------VEEFVEVAEKLAD-AGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKL 161 (296)
T ss_pred CCcEEEEEecCC------HHHHHHHHHHHHH-cCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 589999995321 1234556666655 4789999998754 3456678888887789998774
Q ss_pred C
Q 021144 276 N 276 (317)
Q Consensus 276 N 276 (317)
+
T Consensus 162 ~ 162 (296)
T cd04740 162 T 162 (296)
T ss_pred C
Confidence 3
No 69
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=87.96 E-value=13 Score=34.10 Aligned_cols=100 Identities=15% Similarity=0.071 Sum_probs=62.9
Q ss_pred HHHHHHhCCCCEEEeccCC--------------CHHHHHHHHHHHHHhCCC-ccEEEEEEEcCCCcccCC-CcHHHHHHH
Q 021144 173 RVLILANSGADLIAFETIP--------------NKLEAKAYAELLEEEGIT-IPAWFSFNSKDGINVVSG-DSILECASI 236 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p--------------~~~Ea~a~~~~~~~~~~~-~pv~iSf~~~~~~~l~~G-~~l~~a~~~ 236 (317)
-++.+.++||+.+.+|-.. +.+|...-++++++...+ .+++|-... +... .| ..++++++.
T Consensus 89 ~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiART--Da~~-~~~~~~~eai~R 165 (243)
T cd00377 89 TVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIART--DALL-AGEEGLDEAIER 165 (243)
T ss_pred HHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEc--Cchh-ccCCCHHHHHHH
Confidence 4777888999999997432 677877777776664322 234443322 2222 33 568888877
Q ss_pred hhc--CCCceEEEEcCC-ChhhhHHHHHHHHhhCCCcEEEEeCCCC
Q 021144 237 ADS--CEQVVAVGINCT-SPRFIHGLILSVRKVTSKPVIIYPNSGE 279 (317)
Q Consensus 237 ~~~--~~~~~aiGvNC~-~p~~~~~~l~~l~~~~~~pl~vyPNaG~ 279 (317)
+.. ..|++++-+-+. .++.+.. +.+..+.|+++|+..+.
T Consensus 166 a~ay~~AGAD~v~v~~~~~~~~~~~----~~~~~~~Pl~~~~~~~~ 207 (243)
T cd00377 166 AKAYAEAGADGIFVEGLKDPEEIRA----FAEAPDVPLNVNMTPGG 207 (243)
T ss_pred HHHHHHcCCCEEEeCCCCCHHHHHH----HHhcCCCCEEEEecCCC
Confidence 642 247888887664 3444444 44446899999987654
No 70
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=87.84 E-value=32 Score=39.01 Aligned_cols=159 Identities=18% Similarity=0.195 Sum_probs=93.7
Q ss_pred HHHHHHHHH----HHHhhccccccccccccHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCC
Q 021144 55 HLVRKVHLD----YLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRIS 130 (317)
Q Consensus 55 e~V~~iH~~----Yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~ 130 (317)
|.+++.|++ ++++|+|+|.-=|+.-.. +++ +++..++++.++. ..
T Consensus 160 del~~~y~eQi~~L~e~GVDllliETi~d~~-----------Eak----Aal~a~~~~~~~~----------------~~ 208 (1229)
T PRK09490 160 DELVAAYREQTRGLIEGGADLILIETIFDTL-----------NAK----AAIFAVEEVFEEL----------------GV 208 (1229)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeeeCCHH-----------HHH----HHHHHHHHHHhhc----------------CC
Confidence 566666654 456789999888877442 222 3344444432211 12
Q ss_pred CCCeEEEEeeC-CCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCC
Q 021144 131 SRPVLVAASVG-SYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGIT 209 (317)
Q Consensus 131 ~~~~~VagsiG-P~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~ 209 (317)
+.+++|..++- ..|..+. | .+.+.+ +..+...++|.|.+-.-....++..+++-+.+.. +
T Consensus 209 ~lPv~vS~T~~d~~Gr~ls------G-----~~~ea~-------~~~l~~~~~~avGlNCs~GP~~m~~~l~~l~~~~-~ 269 (1229)
T PRK09490 209 RLPVMISGTITDASGRTLS------G-----QTTEAF-------WNSLRHAKPLSIGLNCALGADELRPYVEELSRIA-D 269 (1229)
T ss_pred CCeEEEEEEEECCCCccCC------C-----CcHHHH-------HHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHHhc-C
Confidence 35899999984 3554332 2 133222 3334467999999998878889999988887643 3
Q ss_pred ccEEEEEEEcCC----CcccCCCcHHHHHHHh---hcCCCceEEEEcCC-ChhhhHHHHHHHHhh
Q 021144 210 IPAWFSFNSKDG----INVVSGDSILECASIA---DSCEQVVAVGINCT-SPRFIHGLILSVRKV 266 (317)
Q Consensus 210 ~pv~iSf~~~~~----~~l~~G~~l~~a~~~~---~~~~~~~aiGvNC~-~p~~~~~~l~~l~~~ 266 (317)
.|+. +.-+.+ ...-+. ++++.+..+ .+...+..||=-|. .|+|+..+-+.+...
T Consensus 270 ~pi~--vyPNAGlP~~~~~yd~-tPe~~a~~~~~~~~~G~v~IIGGCCGTtPeHI~ala~~l~~~ 331 (1229)
T PRK09490 270 TYVS--AHPNAGLPNAFGEYDE-TPEEMAAQIGEFAESGFLNIVGGCCGTTPEHIAAIAEAVAGL 331 (1229)
T ss_pred CeEE--EEeCCCCCCCCCCCCC-CHHHHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHHHhcC
Confidence 5544 322211 011122 344433333 33323889999995 899998888777653
No 71
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=87.80 E-value=3.3 Score=39.46 Aligned_cols=60 Identities=13% Similarity=0.102 Sum_probs=36.2
Q ss_pred CccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCCh------------hhhHHHHHHHHhhCCCcEEEE
Q 021144 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSP------------RFIHGLILSVRKVTSKPVIIY 274 (317)
Q Consensus 209 ~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~p------------~~~~~~l~~l~~~~~~pl~vy 274 (317)
+.|+++|+...+.+ ...+.++.++....+++|=+|+++| +.+..+++.+++.+++|+++.
T Consensus 92 ~~pvI~Si~G~~~~------~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~~~Pv~vK 163 (310)
T PRK02506 92 NKPHFLSVVGLSPE------ETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYFTKPLGVK 163 (310)
T ss_pred CCCEEEEEEeCcHH------HHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhcCCccEEe
Confidence 47888888442221 1234455554432378888888754 445667777777777787643
No 72
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=87.73 E-value=4.4 Score=37.65 Aligned_cols=45 Identities=29% Similarity=0.329 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEE
Q 021144 162 SLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAW 213 (317)
Q Consensus 162 s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~ 213 (317)
+.+++. .-.++++.+.++|+|.|++|-+|+ ++++.+.+.+ ++|++
T Consensus 153 t~~~a~-~~i~ra~a~~~AGA~~i~lE~v~~-~~~~~i~~~v-----~iP~i 197 (254)
T cd06557 153 TEEEAE-RLLEDALALEEAGAFALVLECVPA-ELAKEITEAL-----SIPTI 197 (254)
T ss_pred CHHHHH-HHHHHHHHHHHCCCCEEEEcCCCH-HHHHHHHHhC-----CCCEE
Confidence 444444 444589999999999999999985 5666555432 37776
No 73
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=87.68 E-value=2.2 Score=37.10 Aligned_cols=65 Identities=18% Similarity=0.195 Sum_probs=43.5
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcC
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC 250 (317)
+++..+++|+|.|.+.+++ .++++.+++.+++.+++ +.+.++ .|-+++.+.++.. .+++.|++-+
T Consensus 92 e~~ea~~~g~d~I~lD~~~-~~~~~~~v~~l~~~~~~--v~ie~S--------GGI~~~ni~~ya~--~gvD~isvg~ 156 (169)
T PF01729_consen 92 EAEEALEAGADIIMLDNMS-PEDLKEAVEELRELNPR--VKIEAS--------GGITLENIAEYAK--TGVDVISVGS 156 (169)
T ss_dssp HHHHHHHTT-SEEEEES-C-HHHHHHHHHHHHHHTTT--SEEEEE--------SSSSTTTHHHHHH--TT-SEEEECH
T ss_pred HHHHHHHhCCCEEEecCcC-HHHHHHHHHHHhhcCCc--EEEEEE--------CCCCHHHHHHHHh--cCCCEEEcCh
Confidence 3444666899999999984 79999999988887644 333331 3556666666654 4789988866
No 74
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=87.65 E-value=12 Score=34.65 Aligned_cols=100 Identities=20% Similarity=0.238 Sum_probs=61.0
Q ss_pred HHHHHHhCC-CCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCC
Q 021144 173 RVLILANSG-ADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT 251 (317)
Q Consensus 173 qi~~l~~~g-vD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~ 251 (317)
.++.+.+.| ||++=+|--.....++.++..+++.+ .++++|+..- ..+++-..+.+.+..+.. .+++.+=+-|.
T Consensus 100 ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~--~kvI~S~H~f--~~tP~~~~l~~~~~~~~~-~gaDivKia~~ 174 (253)
T PRK02412 100 LIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHEHG--VKVVLSYHDF--EKTPPKEEIVERLRKMES-LGADIVKIAVM 174 (253)
T ss_pred HHHHHHhcCCCCEEEEeccCChHHHHHHHHHHHHcC--CEEEEeeCCC--CCCcCHHHHHHHHHHHHH-hCCCEEEEEec
Confidence 345556677 89999996555555566666666644 8899998421 122222335555555543 46666666664
Q ss_pred --ChhhhHHHHHHHHhh----CCCcEEEEeCC
Q 021144 252 --SPRFIHGLILSVRKV----TSKPVIIYPNS 277 (317)
Q Consensus 252 --~p~~~~~~l~~l~~~----~~~pl~vyPNa 277 (317)
++..+..+++...+. .+.|+++|.-+
T Consensus 175 a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG 206 (253)
T PRK02412 175 PQSEQDVLTLLNATREMKELYADQPLITMSMG 206 (253)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 566777776554332 46798888754
No 75
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=87.55 E-value=28 Score=33.49 Aligned_cols=227 Identities=19% Similarity=0.181 Sum_probs=127.5
Q ss_pred hHHHHHHHHHHHHhhccccccccccccHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCC
Q 021144 54 PHLVRKVHLDYLDAGANIIITASYQATIQGFEAK-GFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSR 132 (317)
Q Consensus 54 Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~~-g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~ 132 (317)
.+.+.+.-++-++.|-.-+.. |+.-....++. |-+...-..++.++++..|++. .
T Consensus 56 id~l~~~v~~~~~~GI~~v~l--Fgvi~~~~Kd~~gs~a~~~~g~v~~air~iK~~~----------------------p 111 (324)
T PF00490_consen 56 IDSLVKEVEEAVDLGIRAVIL--FGVIDPSKKDEEGSEAYNPDGLVQRAIRAIKKAF----------------------P 111 (324)
T ss_dssp HHHHHHHHHHHHHTT--EEEE--EEE-SCSC-BSS-GGGGSTTSHHHHHHHHHHHHS----------------------T
T ss_pred HHHHHHHHHHHHHCCCCEEEE--EeeCCcccCCcchhcccCCCChHHHHHHHHHHhC----------------------C
Confidence 366667777888888774433 33211111111 1110111247788888777553 1
Q ss_pred CeEEEEe--eCCCcCccCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCC-
Q 021144 133 PVLVAAS--VGSYGAYLADGSE-YSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGI- 208 (317)
Q Consensus 133 ~~~Vags--iGP~g~~l~~gse-Y~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~- 208 (317)
+.+|..+ +-||-..-++|-- ..+ ..+.-++-.+...+|+-.++++|+|+++==-|-+- .+.+|.+++.+.+-
T Consensus 112 dl~vi~Dvclc~YT~hGHcGil~~~~---g~idND~Tl~~Lak~Al~~A~AGADiVAPSdMMDG-rV~aIR~aLd~~g~~ 187 (324)
T PF00490_consen 112 DLLVITDVCLCEYTSHGHCGILDDED---GEIDNDETLERLAKQALSHAEAGADIVAPSDMMDG-RVGAIREALDEAGFS 187 (324)
T ss_dssp TSEEEEEE-STTTBTSSSSSEB-CTT---SSBEHHHHHHHHHHHHHHHHHHT-SEEEE-S--TT-HHHHHHHHHHHTTCT
T ss_pred CcEEEEecccccccCCCceEEEECCC---CeEecHHHHHHHHHHHHHHHHhCCCeeccccccCC-HHHHHHHHHHhCCCC
Confidence 3555554 4566555444422 111 22677888888888999999999999996666554 46788888888763
Q ss_pred CccEEEEEEEcCC---------------------CcccCCCcHHHHHHHhh--cCCCceEEEEcCCChhhhHHHHHHHHh
Q 021144 209 TIPAWFSFNSKDG---------------------INVVSGDSILECASIAD--SCEQVVAVGINCTSPRFIHGLILSVRK 265 (317)
Q Consensus 209 ~~pv~iSf~~~~~---------------------~~l~~G~~l~~a~~~~~--~~~~~~aiGvNC~~p~~~~~~l~~l~~ 265 (317)
+.|+ +|.+.+=. ..-.|-....+|+..+. -..|.+.+.|-=..| -+.+++.+++
T Consensus 188 ~v~I-mSYsaKyaS~fYGPFRdAa~Sap~fgDrktYQmdp~N~~EAlre~~~D~~EGAD~lMVKPal~--YLDIi~~~k~ 264 (324)
T PF00490_consen 188 DVPI-MSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREAELDIEEGADILMVKPALP--YLDIIRRVKE 264 (324)
T ss_dssp TSEE-EEEEEEB-SSTGHHHHHHHT-HHSSSTSTTTSB-TT-HHHHHHHHHHHHHTT-SEEEEESSGG--GHHHHHHHHH
T ss_pred CccE-EechHHHhhhhhHhHHHHhcCCccccCcccccCCCccHHHHHHHhhhhHhhCCCEEEeecchh--HHHHHHHHHH
Confidence 4454 47775421 11112223344544432 225889998876543 3577888888
Q ss_pred hCCCcEEEEeCCCCc---cccccccccccCCCChhhHHHHHHHHHHccccccc
Q 021144 266 VTSKPVIIYPNSGET---YNAELKKWVVSFSLHFFPLELILNPFASCRLISFF 315 (317)
Q Consensus 266 ~~~~pl~vyPNaG~~---~d~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~~~ 315 (317)
.++.|+.+|-=+||- .....+.|.. ....+.+....+.++|.=-||
T Consensus 265 ~~~~P~~aYqVSGEYaMikaAa~~G~~d----~~~~~~Esl~~~kRAGAd~Ii 313 (324)
T PF00490_consen 265 RFDLPVAAYQVSGEYAMIKAAAQNGWID----EKRVVLESLLSIKRAGADIII 313 (324)
T ss_dssp HCTS-EEEEETHHHHHHHHHHHHTTSS-----HHHHHHHHHHHHHHHT-SEEE
T ss_pred hcCCCEEEEEehHHHHHHHHHHHCCCcc----hhhHHHHHHHHHHHcCCCEEE
Confidence 899999999999962 2333456752 123566777777777764443
No 76
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=87.53 E-value=14 Score=33.83 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhCCC--CEEEecc-----CCCHHHHHHHHHHHHHhCCCccEEEE-EEEcC
Q 021144 168 EFHRRRVLILANSGA--DLIAFET-----IPNKLEAKAYAELLEEEGITIPAWFS-FNSKD 220 (317)
Q Consensus 168 ~~h~~qi~~l~~~gv--D~l~~ET-----~p~~~Ea~a~~~~~~~~~~~~pv~iS-f~~~~ 220 (317)
+.|.+.++.|.+.|+ |.|-++. .|++.+++..++.+.+.+ +||+|| +.+..
T Consensus 136 ~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~~~~g--~pi~iTE~dv~~ 194 (254)
T smart00633 136 QAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRFASLG--LEIQITELDISG 194 (254)
T ss_pred HHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHHHHcC--CceEEEEeecCC
Confidence 467778888887765 8887663 378899999998888765 999998 76654
No 77
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=87.36 E-value=26 Score=32.92 Aligned_cols=98 Identities=15% Similarity=0.145 Sum_probs=59.7
Q ss_pred HHHHHHHHHhCC-CCEEEe------------ccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHH
Q 021144 170 HRRRVLILANSG-ADLIAF------------ETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASI 236 (317)
Q Consensus 170 h~~qi~~l~~~g-vD~l~~------------ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~ 236 (317)
|.+.++.+.++| +|.|=+ .-..+.+.+..+++.+++.. +.|+++-++. +-+.+.+.++.
T Consensus 106 ~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~-------~~~~~~~~a~~ 177 (301)
T PRK07259 106 YAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTP-------NVTDIVEIAKA 177 (301)
T ss_pred HHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCC-------CchhHHHHHHH
Confidence 445566677788 998844 12234566777888888764 6899987752 11245556666
Q ss_pred hhcCCCceEEEE-cCCC-h------------------------hhhHHHHHHHHhhCCCcEEEEeCCC
Q 021144 237 ADSCEQVVAVGI-NCTS-P------------------------RFIHGLILSVRKVTSKPVIIYPNSG 278 (317)
Q Consensus 237 ~~~~~~~~aiGv-NC~~-p------------------------~~~~~~l~~l~~~~~~pl~vyPNaG 278 (317)
+.+ .++++|-+ |++. . ......+.++++..+.|++. |+|
T Consensus 178 l~~-~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~--~GG 242 (301)
T PRK07259 178 AEE-AGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIG--MGG 242 (301)
T ss_pred HHH-cCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEE--ECC
Confidence 654 47776543 5431 0 01245677777777788654 555
No 78
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=87.24 E-value=7.5 Score=35.72 Aligned_cols=47 Identities=17% Similarity=0.111 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEE
Q 021144 165 TLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSF 216 (317)
Q Consensus 165 el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf 216 (317)
+-.+.--+|++.+.++|+|.+++|.+.+.+|++.+++.+ + .|+.+..
T Consensus 152 ~~~deaI~R~~aY~eAGAD~ifi~~~~~~~~i~~~~~~~---~--~Pl~v~~ 198 (238)
T PF13714_consen 152 EGLDEAIERAKAYAEAGADMIFIPGLQSEEEIERIVKAV---D--GPLNVNP 198 (238)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEETTSSSHHHHHHHHHHH---S--SEEEEET
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhc---C--CCEEEEc
Confidence 333445568999999999999999999999987776655 2 7866544
No 79
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=87.07 E-value=23 Score=32.62 Aligned_cols=93 Identities=9% Similarity=0.002 Sum_probs=55.3
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCC---------cccCCCcHHHHHHHhhc--CC
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGI---------NVVSGDSILECASIADS--CE 241 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~---------~l~~G~~l~~a~~~~~~--~~ 241 (317)
-++.|.++||+.+-+|-. .|....++++++.+ .||+.-.-..... ..++-..++++++.... ..
T Consensus 94 ~~~~l~~aGa~gv~iED~---~~~~~~i~ai~~a~--i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~A 168 (240)
T cd06556 94 LAKTFMRAGAAGVKIEGG---EWHIETLQMLTAAA--VPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPA 168 (240)
T ss_pred HHHHHHHcCCcEEEEcCc---HHHHHHHHHHHHcC--CeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHc
Confidence 356677799999999975 45556677777755 6666554332110 11111234555544321 25
Q ss_pred CceEEEEcCCChhhhHHHHHHHHhhCCCcEEEE
Q 021144 242 QVVAVGINCTSPRFIHGLILSVRKVTSKPVIIY 274 (317)
Q Consensus 242 ~~~aiGvNC~~p~~~~~~l~~l~~~~~~pl~vy 274 (317)
++++|=+-|..++. ++++.+..+.|++..
T Consensus 169 GAd~i~~e~~~~e~----~~~i~~~~~~P~~~~ 197 (240)
T cd06556 169 GADLIVMECVPVEL----AKQITEALAIPLAGI 197 (240)
T ss_pred CCCEEEEcCCCHHH----HHHHHHhCCCCEEEE
Confidence 88999898884343 444555567897664
No 80
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=87.04 E-value=20 Score=34.14 Aligned_cols=81 Identities=16% Similarity=0.064 Sum_probs=44.1
Q ss_pred HHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHH---hhcCCCceEEEEcC
Q 021144 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASI---ADSCEQVVAVGINC 250 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~---~~~~~~~~aiGvNC 250 (317)
+..+.+.|+|.+-++...++.|++. ..+ -.+.+.-.++....+..| +.+++.+. +-+ .+-..++..|
T Consensus 248 ~~~l~~~g~d~ls~d~~~~l~~~~~------~~g--~~~~i~Gnidp~~ll~~g-t~eeI~~~v~~~l~-~~~~Il~~gc 317 (340)
T TIGR01463 248 LRDIANNGCFGFSVDMKPGMDHAKR------VIG--GQASLVGNLSPFSTLMNG-TPEKVKKLAKEVLY-NGGDIVMPGC 317 (340)
T ss_pred HHHHHHhCCCEEeecCCCCHHHHHH------HcC--CceEEEecCChHHHhcCC-CHHHHHHHHHHHHH-cCCeEECCCC
Confidence 4556778999999999989877542 223 223333444433334445 33444333 322 2345677778
Q ss_pred C-C----hhhhHHHHHHHH
Q 021144 251 T-S----PRFIHGLILSVR 264 (317)
Q Consensus 251 ~-~----p~~~~~~l~~l~ 264 (317)
. . ++.+..+++..+
T Consensus 318 gi~~~tp~eni~a~v~a~~ 336 (340)
T TIGR01463 318 DIDWMTPLENLKAMIEACK 336 (340)
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 5 2 245555555443
No 81
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=86.96 E-value=10 Score=34.55 Aligned_cols=97 Identities=10% Similarity=-0.024 Sum_probs=61.3
Q ss_pred HHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCc------ccCCCcHHHHHHHhhcCCCceEEE
Q 021144 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGIN------VVSGDSILECASIADSCEQVVAVG 247 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~------l~~G~~l~~a~~~~~~~~~~~aiG 247 (317)
++.+.+.|+|-+++-|.. +.+...+-++.++++ +. +++|+..+++.- -.++.++.+.++.+.+ .++..+-
T Consensus 91 v~~~l~~Ga~kvvigt~a-~~~~~~l~~~~~~fg-~~-ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~-~g~~~ii 166 (234)
T PRK13587 91 IMDYFAAGINYCIVGTKG-IQDTDWLKEMAHTFP-GR-IYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSD-IPLGGII 166 (234)
T ss_pred HHHHHHCCCCEEEECchH-hcCHHHHHHHHHHcC-CC-EEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHH-cCCCEEE
Confidence 444556899999887654 222233444455554 34 888998765421 1356778888888875 4666777
Q ss_pred EcCCChhh-----hHHHHHHHHhhCCCcEEEE
Q 021144 248 INCTSPRF-----IHGLILSVRKVTSKPVIIY 274 (317)
Q Consensus 248 vNC~~p~~-----~~~~l~~l~~~~~~pl~vy 274 (317)
++..+.+. -..+++++.+.++.|+++.
T Consensus 167 ~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~ 198 (234)
T PRK13587 167 YTDIAKDGKMSGPNFELTGQLVKATTIPVIAS 198 (234)
T ss_pred EecccCcCCCCccCHHHHHHHHHhCCCCEEEe
Confidence 77764322 2457777777777887665
No 82
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=86.95 E-value=8.6 Score=36.82 Aligned_cols=93 Identities=14% Similarity=0.144 Sum_probs=54.5
Q ss_pred hCCCCEEEeccCCCHHHHH---HHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCCh--
Q 021144 179 NSGADLIAFETIPNKLEAK---AYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSP-- 253 (317)
Q Consensus 179 ~~gvD~l~~ET~p~~~Ea~---a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~p-- 253 (317)
+.|+|+..-|.+..-.... .....+.....+.|+.+++.= .+.+.+.++++.+.+ .++++|-+||+.|
T Consensus 31 ~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g------~~~~~~~~aa~~~~~-~g~d~IdlN~gCP~~ 103 (321)
T PRK10415 31 EMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAG------SDPKEMADAARINVE-SGAQIIDINMGCPAK 103 (321)
T ss_pred HHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEeC------CCHHHHHHHHHHHHH-CCCCEEEEeCCCCHH
Confidence 3578998888777632211 011111111123566666510 122334455655544 5889999999755
Q ss_pred ---------------hhhHHHHHHHHhhCCCcEEEEeCCC
Q 021144 254 ---------------RFIHGLILSVRKVTSKPVIIYPNSG 278 (317)
Q Consensus 254 ---------------~~~~~~l~~l~~~~~~pl~vyPNaG 278 (317)
+.+..+++.+++..+.|+.++-+.|
T Consensus 104 ~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G 143 (321)
T PRK10415 104 KVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTG 143 (321)
T ss_pred HHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEcc
Confidence 3466677777777788999988866
No 83
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=86.70 E-value=8.9 Score=36.76 Aligned_cols=100 Identities=16% Similarity=0.240 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhCCC-CEEEeccCCCHHHHHH-HHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEE
Q 021144 169 FHRRRVLILANSGA-DLIAFETIPNKLEAKA-YAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAV 246 (317)
Q Consensus 169 ~h~~qi~~l~~~gv-D~l~~ET~p~~~Ea~a-~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~ai 246 (317)
.||..++. -|+ |+..=|-+..-.=... --+.+.....+.|+.+++.- .+.+.+.++++.+.+ .+.++|
T Consensus 15 ~fR~l~~~---~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~g------~~p~~~~~aA~~~~~-~g~d~I 84 (318)
T TIGR00742 15 HFRYFLRL---LSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLGG------SDPNDLAKCAKIAEK-RGYDEI 84 (318)
T ss_pred HHHHHHHH---hCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEcc------CCHHHHHHHHHHHHh-CCCCEE
Confidence 35544433 355 7777776653210000 00223323346888888831 133456667776665 478999
Q ss_pred EEcCCChhh-----------------hHHHHHHHHhhCCCcEEEEeCCC
Q 021144 247 GINCTSPRF-----------------IHGLILSVRKVTSKPVIIYPNSG 278 (317)
Q Consensus 247 GvNC~~p~~-----------------~~~~l~~l~~~~~~pl~vyPNaG 278 (317)
-|||..|.. +.++++.+++..+.|+.|.-..|
T Consensus 85 DlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g 133 (318)
T TIGR00742 85 NLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIG 133 (318)
T ss_pred EEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 999976522 46677778877789999988776
No 84
>COG2224 AceA Isocitrate lyase [Energy production and conversion]
Probab=86.55 E-value=5.8 Score=39.10 Aligned_cols=29 Identities=34% Similarity=0.358 Sum_probs=24.8
Q ss_pred CCCEEEecc-CCCHHHHHHHHHHHHHhCCC
Q 021144 181 GADLIAFET-IPNKLEAKAYAELLEEEGIT 209 (317)
Q Consensus 181 gvD~l~~ET-~p~~~Ea~a~~~~~~~~~~~ 209 (317)
-.|+|++|| -|++++++...+++++..++
T Consensus 283 yaDl~W~ET~~Pdle~ak~Fae~Ih~~~P~ 312 (433)
T COG2224 283 YADLLWCETSTPDLEEARQFAEAIHAKYPG 312 (433)
T ss_pred ccceEEEecCCCCHHHHHHHHHHHHHhCCc
Confidence 469999997 58999999999999986543
No 85
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=86.53 E-value=7.4 Score=39.45 Aligned_cols=66 Identities=11% Similarity=0.105 Sum_probs=46.3
Q ss_pred HHHHHHHHhCCCCEEEeccC-CCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEE
Q 021144 171 RRRVLILANSGADLIAFETI-PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (317)
Q Consensus 171 ~~qi~~l~~~gvD~l~~ET~-p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGv 248 (317)
.++++.|.++|+|+|.+.+- .....+...++.+++..++.|+++. ++.+.+++..+++ .++++|.+
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g----------~v~t~e~a~~l~~--aGad~i~v 296 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAG----------NVATAEAARALIE--AGADAVKV 296 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEe----------ccCCHHHHHHHHH--cCCCEEEE
Confidence 56889999999999988863 4444555566667765446888872 4667777777665 36777754
No 86
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=86.38 E-value=15 Score=35.23 Aligned_cols=66 Identities=11% Similarity=0.132 Sum_probs=43.3
Q ss_pred HHHHHHHHhCCCCEEEecc-CCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEE
Q 021144 171 RRRVLILANSGADLIAFET-IPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (317)
Q Consensus 171 ~~qi~~l~~~gvD~l~~ET-~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGv 248 (317)
.++++.++++|+|+|.+-+ ..+.......++.+++..+++|+++ + ...+.+.+...++ .++++|-+
T Consensus 96 ~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~-------G---~v~t~~~A~~l~~--aGaD~I~v 162 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIA-------G---NVVTAEAARDLID--AGADGVKV 162 (325)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEE-------C---CCCCHHHHHHHHh--cCCCEEEE
Confidence 4678899999999998764 2334555666777777654567775 1 2356666666555 46777644
No 87
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=86.37 E-value=7.7 Score=38.18 Aligned_cols=106 Identities=18% Similarity=0.194 Sum_probs=56.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh---CCCCEEE---------ecc-CCCHHHHHHHHHHHHHhCCCccEEEE
Q 021144 149 DGSEYSGDYGDAVSLETLKEFHRRRVLILAN---SGADLIA---------FET-IPNKLEAKAYAELLEEEGITIPAWFS 215 (317)
Q Consensus 149 ~gseY~g~y~~~~s~~el~~~h~~qi~~l~~---~gvD~l~---------~ET-~p~~~Ea~a~~~~~~~~~~~~pv~iS 215 (317)
||+.|.|. .+..+..+.+.+-++.+.+ .|+++++ ++| +++..++.++ +++.+ -|+.+.
T Consensus 139 DG~~~~g~----~~~~~a~~rl~esL~eI~~~~~~~v~~~iE~Kp~Ep~~y~t~~~~~~~~l~l---~~~lg--~~~~v~ 209 (378)
T TIGR02635 139 DGTNYPGQ----DDFRSRKDRLEESLAEVYEHLGADMRLLIEYKFFEPAFYHTDIPDWGTAYAL---SEKLG--ERALVL 209 (378)
T ss_pred CcCcCCcc----cCHHHHHHHHHHHHHHHHHhCcCCCEEEEecCCCCCceeeecCCcHHHHHHH---HHhhC--CCceEE
Confidence 56666553 3455555555555555543 3666654 133 4444444443 44444 444444
Q ss_pred EEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCC------------ChhhhHHHHHHHHhh
Q 021144 216 FNSKDGINVVSGDSILECASIADSCEQVVAVGINCT------------SPRFIHGLILSVRKV 266 (317)
Q Consensus 216 f~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~------------~p~~~~~~l~~l~~~ 266 (317)
+ |-++...|+++++.+..+.....+..|=+|=. .|..+..+++++.+.
T Consensus 210 l---D~GH~~~~Enia~~~a~l~~~~kL~hiH~nd~~~~Ddd~~vG~~d~~e~~~il~el~~~ 269 (378)
T TIGR02635 210 V---DTGHHAQGTNIEFIVATLLDEKKLGGFHFNSRKYADDDLTVGAINPYELFLIFKEIVRA 269 (378)
T ss_pred e---ecCccCCCCCHHHHHHHHhhCCceeEEEecCCCcccCCCceecCCHHHHHHHHHHHHhc
Confidence 4 44666689999997766653333444545421 144555666666543
No 88
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=86.30 E-value=10 Score=37.56 Aligned_cols=106 Identities=17% Similarity=0.195 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCEE-EeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCC
Q 021144 164 ETLKEFHRRRVLILANSGADLI-AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQ 242 (317)
Q Consensus 164 ~el~~~h~~qi~~l~~~gvD~l-~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~ 242 (317)
+++.+-| ++...+.|+|+| +|-.+.+...++.+++++++.+.+.-..+|.|..+-.++ +...+.++.+.+ .+
T Consensus 97 DDvVe~F---v~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~---e~yv~~akel~~-~g 169 (472)
T COG5016 97 DDVVEKF---VEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTL---EYYVELAKELLE-MG 169 (472)
T ss_pred hHHHHHH---HHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccH---HHHHHHHHHHHH-cC
Confidence 4555555 445677999999 788999999999999999999866677777776553322 223344555543 57
Q ss_pred ceEEEEcCC----ChhhhHHHHHHHHhhCCCcEEEEeC
Q 021144 243 VVAVGINCT----SPRFIHGLILSVRKVTSKPVIIYPN 276 (317)
Q Consensus 243 ~~aiGvNC~----~p~~~~~~l~~l~~~~~~pl~vyPN 276 (317)
++.|-|-=. .|...-.+++.+++..+.|+-+.-.
T Consensus 170 ~DSIciKDmaGlltP~~ayelVk~iK~~~~~pv~lHtH 207 (472)
T COG5016 170 VDSICIKDMAGLLTPYEAYELVKAIKKELPVPVELHTH 207 (472)
T ss_pred CCEEEeecccccCChHHHHHHHHHHHHhcCCeeEEecc
Confidence 777766552 4888888999999887777665433
No 89
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=86.20 E-value=13 Score=35.48 Aligned_cols=100 Identities=19% Similarity=0.140 Sum_probs=56.3
Q ss_pred HHHHHHHHHhCCCCEEEeccCCCHH---HHHHHHHHHHH------hCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcC
Q 021144 170 HRRRVLILANSGADLIAFETIPNKL---EAKAYAELLEE------EGITIPAWFSFNSKDGINVVSGDSILECASIADSC 240 (317)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET~p~~~---Ea~a~~~~~~~------~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~ 240 (317)
||..++.+ .|+|+..=|-++.-. .-+.......+ ...+.|+.+++--. +-+.+.++++.+.+
T Consensus 16 fR~l~~~~--g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g~------~p~~~~~aA~~~~~- 86 (312)
T PRK10550 16 VRELLTEV--NDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLGQ------YPQWLAENAARAVE- 86 (312)
T ss_pred HHHHHHHh--CCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEeccC------CHHHHHHHHHHHHH-
Confidence 44444333 248999999877321 11111111111 11247888888211 12234556666654
Q ss_pred CCceEEEEcCCChh-----------------hhHHHHHHHHhhC--CCcEEEEeCCC
Q 021144 241 EQVVAVGINCTSPR-----------------FIHGLILSVRKVT--SKPVIIYPNSG 278 (317)
Q Consensus 241 ~~~~aiGvNC~~p~-----------------~~~~~l~~l~~~~--~~pl~vyPNaG 278 (317)
.+.++|-|||.+|. .+..+++.+++.+ +.|+.|.-..|
T Consensus 87 ~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g 143 (312)
T PRK10550 87 LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLG 143 (312)
T ss_pred cCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECC
Confidence 57899999997652 2344556666655 48999997765
No 90
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=86.20 E-value=13 Score=33.38 Aligned_cols=95 Identities=21% Similarity=0.131 Sum_probs=53.1
Q ss_pred HHHHHHhCCCCEEEecc-CCCH------HHHHHHHHHHHHhCCCccEEEEEEEcCCCccc---CCCcHHHHHHHhhcCCC
Q 021144 173 RVLILANSGADLIAFET-IPNK------LEAKAYAELLEEEGITIPAWFSFNSKDGINVV---SGDSILECASIADSCEQ 242 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET-~p~~------~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~---~G~~l~~a~~~~~~~~~ 242 (317)
+++...+.|+|.+.+.- +... ++++.+.++.++.+ .|+++-... ++.++. +...+..+++...+ .+
T Consensus 81 ~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g--~~~iie~~~-~g~~~~~~~~~~~i~~~~~~a~~-~G 156 (235)
T cd00958 81 SVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYG--LPLIAWMYP-RGPAVKNEKDPDLIAYAARIGAE-LG 156 (235)
T ss_pred CHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcC--CCEEEEEec-cCCcccCccCHHHHHHHHHHHHH-HC
Confidence 46667778998664432 2222 25555566566544 899885533 222222 22334444444444 58
Q ss_pred ceEEEEcCCChhhhHHHHHHHHhhCCCcEEEE
Q 021144 243 VVAVGINCTSPRFIHGLILSVRKVTSKPVIIY 274 (317)
Q Consensus 243 ~~aiGvNC~~p~~~~~~l~~l~~~~~~pl~vy 274 (317)
++.|+++.+.. ...++++.+....|+++-
T Consensus 157 aD~Ik~~~~~~---~~~~~~i~~~~~~pvv~~ 185 (235)
T cd00958 157 ADIVKTKYTGD---AESFKEVVEGCPVPVVIA 185 (235)
T ss_pred CCEEEecCCCC---HHHHHHHHhcCCCCEEEe
Confidence 99999987631 234555555567886444
No 91
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=85.93 E-value=33 Score=33.14 Aligned_cols=131 Identities=12% Similarity=0.089 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEeccCC---------------C---HHHHHHHHHHHHHhCCCccEEEEEEEcCC----
Q 021144 164 ETLKEFHRRRVLILANSGADLIAFETIP---------------N---KLEAKAYAELLEEEGITIPAWFSFNSKDG---- 221 (317)
Q Consensus 164 ~el~~~h~~qi~~l~~~gvD~l~~ET~p---------------~---~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~---- 221 (317)
+++.+||+++++ .|+=+|+.|... + +...+.+++++.+.+ .++++.+.-...
T Consensus 37 ~~~~~~y~~rA~----gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l~d~vh~~G--~~i~~QL~H~G~~~~~ 110 (337)
T PRK13523 37 NFHLIHYGTRAA----GQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKLVTFIHDHG--AKAAIQLAHAGRKAEL 110 (337)
T ss_pred HHHHHHHHHHHc----CCCeEEEECCeEECccccCCCCceecCCHHHHHHHHHHHHHHHhcC--CEEEEEccCCCCCCCC
Confidence 677778887665 788888777321 1 344555666677655 567777632110
Q ss_pred ---------------CcccCCCcHHH----------HHHHhhcCCCceEEEEcCCC---------h--------------
Q 021144 222 ---------------INVVSGDSILE----------CASIADSCEQVVAVGINCTS---------P-------------- 253 (317)
Q Consensus 222 ---------------~~l~~G~~l~~----------a~~~~~~~~~~~aiGvNC~~---------p-------------- 253 (317)
.......+.++ ++..+.+ .+.++|-|||.+ |
T Consensus 111 ~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~-aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGsle 189 (337)
T PRK13523 111 EGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKE-AGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPE 189 (337)
T ss_pred CCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHH
Confidence 01111222222 2333333 589999999983 4
Q ss_pred ---hhhHHHHHHHHhhCCCcEEEEeCCCCccccccccccccCCCChhhHHHHHHHHHHcc
Q 021144 254 ---RFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVVSFSLHFFPLELILNPFASCR 310 (317)
Q Consensus 254 ---~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~w~~~~~~~~~~~~~~~~~w~~~~ 310 (317)
..+..+++.+++..+.|+++.-|..+. . ..+.+++++.+.++...+.|
T Consensus 190 nR~Rf~~eii~~ir~~~~~~v~vRis~~d~--------~-~~G~~~~e~~~i~~~l~~~g 240 (337)
T PRK13523 190 NRYRFLREIIDAVKEVWDGPLFVRISASDY--------H-PGGLTVQDYVQYAKWMKEQG 240 (337)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEeccccc--------C-CCCCCHHHHHHHHHHHHHcC
Confidence 234456677777777899888877431 1 11346777777777777776
No 92
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=85.90 E-value=17 Score=33.85 Aligned_cols=98 Identities=11% Similarity=0.070 Sum_probs=62.9
Q ss_pred HHHHHhCCCCEEEec-cCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCC-
Q 021144 174 VLILANSGADLIAFE-TIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT- 251 (317)
Q Consensus 174 i~~l~~~gvD~l~~E-T~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~- 251 (317)
++...+.|+|.|-+- .+.+++.++.+++.+++.+ ..+.+.+.+.+.++. +-.-+.+.++.+.+ .+++.|.+-=+
T Consensus 97 i~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G--~~v~~~i~~~~~~~~-~~~~~~~~~~~~~~-~Ga~~i~l~DT~ 172 (275)
T cd07937 97 VEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAG--KHVEGAICYTGSPVH-TLEYYVKLAKELED-MGADSICIKDMA 172 (275)
T ss_pred HHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCC--CeEEEEEEecCCCCC-CHHHHHHHHHHHHH-cCCCEEEEcCCC
Confidence 455667899987554 4456788888888898876 555444433332221 22233445555544 46776665433
Q ss_pred ---ChhhhHHHHHHHHhhCCCcEEEEe
Q 021144 252 ---SPRFIHGLILSVRKVTSKPVIIYP 275 (317)
Q Consensus 252 ---~p~~~~~~l~~l~~~~~~pl~vyP 275 (317)
.|..+..+++.+++..+.||.+..
T Consensus 173 G~~~P~~v~~lv~~l~~~~~~~l~~H~ 199 (275)
T cd07937 173 GLLTPYAAYELVKALKKEVGLPIHLHT 199 (275)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 389999999999988777877654
No 93
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=85.89 E-value=25 Score=34.30 Aligned_cols=126 Identities=15% Similarity=0.134 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEE
Q 021144 169 FHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (317)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGv 248 (317)
.-..|+..|.++|+|++-+ |+|+.++++++-+..+.. ++|++.-+.|+. .-|+..++ .+++.+=|
T Consensus 43 atv~Qi~~L~~aGceiVRv-av~~~~~a~al~~I~~~~--~iPlvADIHFd~----------~lAl~a~~--~G~~~iRI 107 (360)
T PRK00366 43 ATVAQIKRLARAGCEIVRV-AVPDMEAAAALPEIKKQL--PVPLVADIHFDY----------RLALAAAE--AGADALRI 107 (360)
T ss_pred HHHHHHHHHHHcCCCEEEE-ccCCHHHHHhHHHHHHcC--CCCEEEecCCCH----------HHHHHHHH--hCCCEEEE
Confidence 3456899999999999974 899999998887766654 499998886632 23555554 36888889
Q ss_pred cCCC----hhhhHHHHHHHHhhCCCcEEEEeCCCCccccccccccccC-CCChhhHHHHHHHHH----Hcccccc
Q 021144 249 NCTS----PRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVVSF-SLHFFPLELILNPFA----SCRLISF 314 (317)
Q Consensus 249 NC~~----p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~w~~~~-~~~~~~~~~~~~~w~----~~~~~~~ 314 (317)
|=.. .+.+.++++..++. +.|+=+=-|+|-.- +.....| ..+|+.+.+.+.+.+ +.||=+|
T Consensus 108 NPGNig~~~~~v~~vv~~ak~~-~ipIRIGvN~GSL~----~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~i 177 (360)
T PRK00366 108 NPGNIGKRDERVREVVEAAKDY-GIPIRIGVNAGSLE----KDLLEKYGEPTPEALVESALRHAKILEELGFDDI 177 (360)
T ss_pred CCCCCCchHHHHHHHHHHHHHC-CCCEEEecCCccCh----HHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcE
Confidence 8853 45667777766654 78888888999531 1111122 246777777665554 4555443
No 94
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=85.79 E-value=15 Score=34.52 Aligned_cols=62 Identities=19% Similarity=0.286 Sum_probs=43.0
Q ss_pred CccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCC-ceEEEEcCCCh-------------hhhHHHHHHHHhhCCCcEEEE
Q 021144 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQ-VVAVGINCTSP-------------RFIHGLILSVRKVTSKPVIIY 274 (317)
Q Consensus 209 ~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~-~~aiGvNC~~p-------------~~~~~~l~~l~~~~~~pl~vy 274 (317)
+.|+++|+...+ -+.+.++++.+.+ .+ +++|=+||+.| +.+.++++.+++..+.|++|.
T Consensus 91 ~~p~i~si~g~~------~~~~~~~a~~~~~-aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vK 163 (301)
T PRK07259 91 DTPIIANVAGST------EEEYAEVAEKLSK-APNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVK 163 (301)
T ss_pred CCcEEEEeccCC------HHHHHHHHHHHhc-cCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 589999994321 2344556666654 45 89999998543 346777888888788999887
Q ss_pred eCC
Q 021144 275 PNS 277 (317)
Q Consensus 275 PNa 277 (317)
=+.
T Consensus 164 l~~ 166 (301)
T PRK07259 164 LTP 166 (301)
T ss_pred cCC
Confidence 653
No 95
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=85.65 E-value=20 Score=33.23 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=29.2
Q ss_pred ccCCChHHHHHHHHHHHHhhcccccccccc--ccHHHH
Q 021144 49 CLVSSPHLVRKVHLDYLDAGANIIITASYQ--ATIQGF 84 (317)
Q Consensus 49 ~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~--as~~~l 84 (317)
+.++.+|.+.++-+.--++|+++|.-..|- .|+..+
T Consensus 23 C~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf 60 (250)
T PRK13397 23 CSIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASF 60 (250)
T ss_pred CccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCccc
Confidence 358999999999999888999999999995 444433
No 96
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=85.55 E-value=35 Score=32.73 Aligned_cols=224 Identities=16% Similarity=0.111 Sum_probs=133.8
Q ss_pred hHHHHHHHHHHHHhhccccccccccccHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCC
Q 021144 54 PHLVRKVHLDYLDAGANIIITASYQATIQGFEAK-GFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSR 132 (317)
Q Consensus 54 Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~~-g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~ 132 (317)
.+.+.+.-++-++.|-.-|.. |+.... ++. |-+...-.-++.+|++..|+.. .
T Consensus 60 id~l~~~~~~~~~~Gi~~v~l--Fgv~~~--Kd~~gs~A~~~~g~v~~air~iK~~~----------------------p 113 (322)
T PRK13384 60 ESALADEIERLYALGIRYVMP--FGISHH--KDAKGSDTWDDNGLLARMVRTIKAAV----------------------P 113 (322)
T ss_pred HHHHHHHHHHHHHcCCCEEEE--eCCCCC--CCCCcccccCCCChHHHHHHHHHHHC----------------------C
Confidence 366777778889999885553 333211 111 2111112357888888777543 1
Q ss_pred CeEEEEe--eCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCC-C
Q 021144 133 PVLVAAS--VGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGI-T 209 (317)
Q Consensus 133 ~~~Vags--iGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~-~ 209 (317)
+.+|..+ +-||-..=++|--..| .+.-++-.+...+|+-.++++|+|+++==.|-+- .+.+|.+++.+.+- +
T Consensus 114 dl~vi~DVcLc~YT~hGHcGil~~g----~i~ND~Tl~~L~~~Als~A~AGADiVAPSdMMDG-rV~aIR~aLd~~g~~~ 188 (322)
T PRK13384 114 EMMVIPDICFCEYTDHGHCGVLHND----EVDNDATVENLVKQSVTAAKAGADMLAPSAMMDG-QVKAIRQGLDAAGFEH 188 (322)
T ss_pred CeEEEeeeecccCCCCCceeeccCC----cCccHHHHHHHHHHHHHHHHcCCCeEeccccccc-HHHHHHHHHHHCCCCC
Confidence 3455544 4566544344332222 2566777777888898999999999996666554 46788888887652 4
Q ss_pred ccEEEEEEEcC------------------C--CcccCCCcHHHHHHHhh--cCCCceEEEEcCCChhhhHHHHHHHHhhC
Q 021144 210 IPAWFSFNSKD------------------G--INVVSGDSILECASIAD--SCEQVVAVGINCTSPRFIHGLILSVRKVT 267 (317)
Q Consensus 210 ~pv~iSf~~~~------------------~--~~l~~G~~l~~a~~~~~--~~~~~~aiGvNC~~p~~~~~~l~~l~~~~ 267 (317)
+|++ |.+.+= + ....|=..-.+|+..+. -..|.+.+.|-=.-| -+.+++.+++.+
T Consensus 189 v~Im-SYsaKyaS~fYGPFRdAa~Sap~gDrksYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~--YLDIi~~~k~~~ 265 (322)
T PRK13384 189 VAIL-AHSAKFASSFYGPFRAAVDCELSGDRKSYQLDYANGRQALLEALLDEAEGADILMVKPGTP--YLDVLSRLRQET 265 (322)
T ss_pred Ccee-ehhHhhhhhhcchHHHHhcCCCCCCcccccCCCCCHHHHHHHHHhhHhhCCCEEEEcCCch--HHHHHHHHHhcc
Confidence 4444 443320 0 01112222334444432 235789888875543 356788888888
Q ss_pred CCcEEEEeCCCCc---cccccccccccCCCChhhHHHHHHHHHHccccccc
Q 021144 268 SKPVIIYPNSGET---YNAELKKWVVSFSLHFFPLELILNPFASCRLISFF 315 (317)
Q Consensus 268 ~~pl~vyPNaG~~---~d~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~~~ 315 (317)
+.|+.+|-=+||- .-...+.|.+ ....+.+....+.++|.=-||
T Consensus 266 ~lPvaaYqVSGEYaMikaAa~~G~~d----~~~~~~Esl~~~kRAGAd~Ii 312 (322)
T PRK13384 266 HLPLAAYQVGGEYAMIKFAALAGALD----ERAVVTETLGGLKRAGADLIV 312 (322)
T ss_pred CCCEEEEEchHHHHHHHHHHHcCCcc----HHHHHHHHHHHHHHcCCCEEe
Confidence 9999999999962 2333456752 234577778888888865444
No 97
>PRK07534 methionine synthase I; Validated
Probab=85.44 E-value=37 Score=32.83 Aligned_cols=116 Identities=11% Similarity=0.066 Sum_probs=65.7
Q ss_pred CCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHH-HHHHHHHHHhCCCc
Q 021144 132 RPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEA-KAYAELLEEEGITI 210 (317)
Q Consensus 132 ~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea-~a~~~~~~~~~~~~ 210 (317)
.+++|.-++-+-|. +.+| .+.+++.+.... ...++|.|.+........+ +.+++..+.. .++
T Consensus 171 ~Pv~vSft~~~~g~-l~~G----------~~~~~~~~~~~~-----~~~~~~avGvNC~~gp~~~~~~l~~~~~~~-~~~ 233 (336)
T PRK07534 171 MPWCGTMSFDTAGR-TMMG----------LTPADLADLVEK-----LGEPPLAFGANCGVGASDLLRTVLGFTAQG-PER 233 (336)
T ss_pred CeEEEEEEECCCCe-eCCC----------CcHHHHHHHHHh-----cCCCceEEEecCCCCHHHHHHHHHHHHHhc-CCC
Confidence 48999999876553 3332 355665553321 1345699999988767666 4555544432 135
Q ss_pred cEEEEEEE----cCCCcccCCCcH---HHHHHHhhcCCCceEEEEcCC-ChhhhHHHHHHHHh
Q 021144 211 PAWFSFNS----KDGINVVSGDSI---LECASIADSCEQVVAVGINCT-SPRFIHGLILSVRK 265 (317)
Q Consensus 211 pv~iSf~~----~~~~~l~~G~~l---~~a~~~~~~~~~~~aiGvNC~-~p~~~~~~l~~l~~ 265 (317)
|+.+--.. .+++++..-.+. .+.+..... .++..||=-|. .|+++..+-+.+..
T Consensus 234 pl~vyPNaG~p~~~~~~~~~~~~p~~~~~~~~~~~~-~Ga~iIGGCCGTtP~hI~~la~~l~~ 295 (336)
T PRK07534 234 PIIAKGNAGIPKYVDGHIHYDGTPELMAEYAVLARD-AGARIIGGCCGTMPEHLAAMRAALDA 295 (336)
T ss_pred eEEEEcCCCCcccCCCccccCCCHHHHHHHHHHHHH-cCCcEEeeecCCCHHHHHHHHHHHcc
Confidence 55532211 011221111223 333333333 58999999995 89999888777754
No 98
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=85.26 E-value=11 Score=33.60 Aligned_cols=91 Identities=23% Similarity=0.357 Sum_probs=56.9
Q ss_pred CCCEEEeccCCCH--HHHHH-HHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCCh----
Q 021144 181 GADLIAFETIPNK--LEAKA-YAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSP---- 253 (317)
Q Consensus 181 gvD~l~~ET~p~~--~Ea~a-~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~p---- 253 (317)
|+|++.=|-+..- ..... ..........+.|+++++... +-..+.++++.+.+ .+.++|-+||.+|
T Consensus 23 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g~------~~~~~~~aa~~~~~-aG~d~ieln~g~p~~~~ 95 (231)
T cd02801 23 GADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGGS------DPETLAEAAKIVEE-LGADGIDLNMGCPSPKV 95 (231)
T ss_pred CCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEcCC------CHHHHHHHHHHHHh-cCCCEEEEeCCCCHHHH
Confidence 5899887755432 11111 112222233468999999532 22345566666654 5899999998653
Q ss_pred -------------hhhHHHHHHHHhhCCCcEEEEeCCC
Q 021144 254 -------------RFIHGLILSVRKVTSKPVIIYPNSG 278 (317)
Q Consensus 254 -------------~~~~~~l~~l~~~~~~pl~vyPNaG 278 (317)
+.+..+++.+++....|+.+.-|.|
T Consensus 96 ~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~ 133 (231)
T cd02801 96 TKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLG 133 (231)
T ss_pred hCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeec
Confidence 4566778888877778898887765
No 99
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=85.11 E-value=9.3 Score=36.02 Aligned_cols=162 Identities=23% Similarity=0.257 Sum_probs=83.5
Q ss_pred ChHHHHHHHH----HHHHhhccccccccccccHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 021144 53 SPHLVRKVHL----DYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGR 128 (317)
Q Consensus 53 ~Pe~V~~iH~----~Yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~ 128 (317)
..+.+++.|+ .++++|+|+|.-=|+..-. ++ +.+++.+++..
T Consensus 129 ~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~-----------E~----~aa~~a~~~~~------------------- 174 (305)
T PF02574_consen 129 SFEELRDFHREQAEALADAGVDLLLFETMPSLA-----------EA----KAALEAIKEVT------------------- 174 (305)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-SEEEEEEEC-CS-----------CH----HHHHHHHHHHH-------------------
T ss_pred cHHHHHHHHHHHHHHHHhcCCCEEEEecCcHHH-----------HH----HHHHHHHHhhh-------------------
Confidence 4568888885 4667899988877776321 12 12333333321
Q ss_pred CCCCCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCC
Q 021144 129 ISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGI 208 (317)
Q Consensus 129 ~~~~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~ 208 (317)
+.+++|.-++-+-+. +.+|. +..+....-....+.+ +.++|.+.+....-.....++.+..+...
T Consensus 175 --~~p~~is~~~~~~~~-l~~g~----------~~~~~~~~~~~~~~~~-~~~~~~iGvNC~~~~~~~~~l~~~~~~~~- 239 (305)
T PF02574_consen 175 --GLPVWISFSCKDSGR-LRDGT----------SLEDAVQVIDELLRAL-PPGPDAIGVNCTSPPEIMKALLELMSATH- 239 (305)
T ss_dssp --HCCSSEEE-EEEEES--TCTT----------BCTTSHHHHHHHHHHH-CTT-SEEEEESSS-HHHHHHHHHHHHHHT-
T ss_pred --hhhceeccchhhhcc-ccCCC----------CHHHHHHHHHHHHHHh-hhhhheEEcCCCCcHHHHhHHHHHHhccC-
Confidence 136778877765543 33332 1222222222333444 68999999998887777777777776653
Q ss_pred CccEEEEEEE---cCCCc--ccCCCcHHH----HHHHhhcCCCceEEEEcCC-ChhhhHHHHHHHH
Q 021144 209 TIPAWFSFNS---KDGIN--VVSGDSILE----CASIADSCEQVVAVGINCT-SPRFIHGLILSVR 264 (317)
Q Consensus 209 ~~pv~iSf~~---~~~~~--l~~G~~l~~----a~~~~~~~~~~~aiGvNC~-~p~~~~~~l~~l~ 264 (317)
+.|+++--.. .+..+ ..+...+.. .++.... .++..||=-|. .|+++..+-+.++
T Consensus 240 ~~~l~vyPNsG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~iiGGCCGt~P~hI~al~~~l~ 304 (305)
T PF02574_consen 240 DIPLIVYPNSGEPYDVGKVWSETPEDFAPEWAEFVKEWVE-AGARIIGGCCGTTPEHIRALAKALD 304 (305)
T ss_dssp -SEEEEE--SBS-TTSSGGSTTTTTSHGGG-HHHHHHHHH-HHHCEE---TT--HHHHHHHHHHTH
T ss_pred CceEEEecCCCCCcccccccccchhhhHHHHHHHHHHHHH-hCCEEEEeCCCCCHHHHHHHHHHhc
Confidence 4777654432 11111 111233333 4443333 36789999995 8999887766543
No 100
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=84.81 E-value=6.7 Score=36.06 Aligned_cols=100 Identities=25% Similarity=0.279 Sum_probs=66.4
Q ss_pred HHHHHhCCCCEEEeccCCCHHHHH-HHHHHHHHhCCCccEEEEEEEcCCCcc--cCCCcHHHHHHHhhcCCCceEEEEcC
Q 021144 174 VLILANSGADLIAFETIPNKLEAK-AYAELLEEEGITIPAWFSFNSKDGINV--VSGDSILECASIADSCEQVVAVGINC 250 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET~p~~~Ea~-a~~~~~~~~~~~~pv~iSf~~~~~~~l--~~G~~l~~a~~~~~~~~~~~aiGvNC 250 (317)
+++|..-|+.=|.+=| |-..++- .+.+.+.+.+.++..+.+|.+.++... .+..++.+++..+.. .++++|=+-|
T Consensus 112 ~~AL~alg~~RIalvT-PY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~-~~aDAifisC 189 (239)
T TIGR02990 112 VDGLAALGVRRISLLT-PYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFD-PDADALFLSC 189 (239)
T ss_pred HHHHHHcCCCEEEEEC-CCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcC-CCCCEEEEeC
Confidence 4556566888888888 4444544 455667777755666667766555433 244455566665544 6889999999
Q ss_pred CChhhhHHHHHHHHhhCCCcEEEEeCC
Q 021144 251 TSPRFIHGLILSVRKVTSKPVIIYPNS 277 (317)
Q Consensus 251 ~~p~~~~~~l~~l~~~~~~pl~vyPNa 277 (317)
+.- ....+++.+.+..++|+ +-.|.
T Consensus 190 TnL-rt~~vi~~lE~~lGkPV-lsSNq 214 (239)
T TIGR02990 190 TAL-RAATCAQRIEQAIGKPV-VTSNQ 214 (239)
T ss_pred CCc-hhHHHHHHHHHHHCCCE-EEHHH
Confidence 973 34577888888889997 44554
No 101
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.67 E-value=5.5 Score=37.76 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=45.7
Q ss_pred HHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcC
Q 021144 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC 250 (317)
+...+++|+|.|.+..|+ .+|++.++..+++..++..+.+| -|-+++.+.+++. .+++.|.+-.
T Consensus 212 a~eal~~gaDiI~LDnm~-~e~vk~av~~~~~~~~~v~ieaS----------GGI~~~ni~~yA~--tGvD~Is~ga 275 (289)
T PRK07896 212 LDEVLAEGAELVLLDNFP-VWQTQEAVQRRDARAPTVLLESS----------GGLTLDTAAAYAE--TGVDYLAVGA 275 (289)
T ss_pred HHHHHHcCCCEEEeCCCC-HHHHHHHHHHHhccCCCEEEEEE----------CCCCHHHHHHHHh--cCCCEEEeCh
Confidence 444567999999999998 99999999877765433333322 3677777777665 5788887765
No 102
>PLN02591 tryptophan synthase
Probab=84.60 E-value=34 Score=31.71 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=50.3
Q ss_pred HHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCce-EEEEcCC-
Q 021144 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVV-AVGINCT- 251 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~-aiGvNC~- 251 (317)
++.+.++|||.+++=-+| ++|....++.+++.+ +..+.=++ .-++-+..-..+..+.+.. .|+.+=+
T Consensus 99 ~~~~~~aGv~GviipDLP-~ee~~~~~~~~~~~g--l~~I~lv~--------Ptt~~~ri~~ia~~~~gFIY~Vs~~GvT 167 (250)
T PLN02591 99 MATIKEAGVHGLVVPDLP-LEETEALRAEAAKNG--IELVLLTT--------PTTPTERMKAIAEASEGFVYLVSSTGVT 167 (250)
T ss_pred HHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHcC--CeEEEEeC--------CCCCHHHHHHHHHhCCCcEEEeeCCCCc
Confidence 445777999999999888 588888888888876 33322111 1112111112222222322 3343321
Q ss_pred C-----hhhhHHHHHHHHhhCCCcEEE
Q 021144 252 S-----PRFIHGLILSVRKVTSKPVII 273 (317)
Q Consensus 252 ~-----p~~~~~~l~~l~~~~~~pl~v 273 (317)
+ |..+...++.+++.++.|+++
T Consensus 168 G~~~~~~~~~~~~i~~vk~~~~~Pv~v 194 (250)
T PLN02591 168 GARASVSGRVESLLQELKEVTDKPVAV 194 (250)
T ss_pred CCCcCCchhHHHHHHHHHhcCCCceEE
Confidence 1 455666777777777777665
No 103
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=84.21 E-value=9.9 Score=34.11 Aligned_cols=103 Identities=16% Similarity=0.063 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEE
Q 021144 169 FHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (317)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGv 248 (317)
.|.+.++.+++.|+|++=+|--..-+.... ....+.. +.++++|+.--+ .+.+-..+.+.++.+.. .+++.+=+
T Consensus 76 ~~~~ll~~~~~~~~d~iDiE~~~~~~~~~~-~~~~~~~--~~~iI~S~H~f~--~tp~~~~l~~~~~~~~~-~gadivKi 149 (224)
T PF01487_consen 76 EYLELLERAIRLGPDYIDIELDLFPDDLKS-RLAARKG--GTKIILSYHDFE--KTPSWEELIELLEEMQE-LGADIVKI 149 (224)
T ss_dssp HHHHHHHHHHHHTSSEEEEEGGCCHHHHHH-HHHHHHT--TSEEEEEEEESS-----THHHHHHHHHHHHH-TT-SEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEcccchhHHHH-HHHHhhC--CCeEEEEeccCC--CCCCHHHHHHHHHHHHh-cCCCeEEE
Confidence 445566667777899999997633332222 3334443 589999997211 22233335566666654 46677666
Q ss_pred cCC--ChhhhHHHHHHHHhh---CCCcEEEEeCC
Q 021144 249 NCT--SPRFIHGLILSVRKV---TSKPVIIYPNS 277 (317)
Q Consensus 249 NC~--~p~~~~~~l~~l~~~---~~~pl~vyPNa 277 (317)
-|. +++....+++..... .+.|+++++-+
T Consensus 150 a~~~~~~~D~~~l~~~~~~~~~~~~~p~i~~~MG 183 (224)
T PF01487_consen 150 AVMANSPEDVLRLLRFTKEFREEPDIPVIAISMG 183 (224)
T ss_dssp EEE-SSHHHHHHHHHHHHHHHHHTSSEEEEEEET
T ss_pred EeccCCHHHHHHHHHHHHHHhhccCCcEEEEEcC
Confidence 554 566666666655444 47899988765
No 104
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.05 E-value=5.8 Score=37.26 Aligned_cols=65 Identities=15% Similarity=0.091 Sum_probs=44.4
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcC
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC 250 (317)
++...+++|+|+|.+.+| +.++++.+++.++...++..+.+| -|-+++.+.+++. .++++|.+-+
T Consensus 194 ea~~A~~~GaDiI~LDn~-~~e~l~~~v~~~~~~~~~~~ieAs----------GgIt~~ni~~ya~--~GvD~IsvG~ 258 (273)
T PRK05848 194 EAKNAMNAGADIVMCDNM-SVEEIKEVVAYRNANYPHVLLEAS----------GNITLENINAYAK--SGVDAISSGS 258 (273)
T ss_pred HHHHHHHcCCCEEEECCC-CHHHHHHHHHHhhccCCCeEEEEE----------CCCCHHHHHHHHH--cCCCEEEeCh
Confidence 344556799999999997 689999998865532222223322 3567777777765 5788888776
No 105
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=83.89 E-value=37 Score=31.67 Aligned_cols=65 Identities=15% Similarity=0.142 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhCCCCEEEec-cC--CCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhc
Q 021144 169 FHRRRVLILANSGADLIAFE-TI--PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS 239 (317)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~E-T~--p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~ 239 (317)
++.+.++.+.+.|+|.|.+- |+ -...++..+++.+++..++ +-++|-+.++ .|..+..++..+..
T Consensus 150 ~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~--~~i~~H~Hnd----~GlA~AN~laA~~a 217 (274)
T cd07938 150 RVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPD--EKLALHFHDT----RGQALANILAALEA 217 (274)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCCC--CeEEEEECCC----CChHHHHHHHHHHh
Confidence 44455666777899998765 43 3577888888888875322 5566666554 47777777777764
No 106
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=83.54 E-value=26 Score=33.88 Aligned_cols=120 Identities=18% Similarity=0.172 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEE
Q 021144 169 FHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (317)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGv 248 (317)
.-..|+..|.++|+|++- =|+|+.+.+.|+-+..++. ++|++.-|-|+ .++ ++..++ .+++.+=|
T Consensus 37 aTv~QI~~L~~aG~dIVR-vtv~~~e~A~A~~~Ik~~~--~vPLVaDiHf~--~rl--------a~~~~~--~g~~k~RI 101 (361)
T COG0821 37 ATVAQIKALERAGCDIVR-VTVPDMEAAEALKEIKQRL--NVPLVADIHFD--YRL--------ALEAAE--CGVDKVRI 101 (361)
T ss_pred HHHHHHHHHHHcCCCEEE-EecCCHHHHHHHHHHHHhC--CCCEEEEeecc--HHH--------HHHhhh--cCcceEEE
Confidence 345689999999999987 4899999988887766654 59999999775 222 333343 25788888
Q ss_pred cCCC---hhhhHHHHHHHHhhCCCcEEEEeCCCCccccccccccccCCCChhhHHHHHHHHH
Q 021144 249 NCTS---PRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVVSFSLHFFPLELILNPFA 307 (317)
Q Consensus 249 NC~~---p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~w~~~~~~~~~~~~~~~~~w~ 307 (317)
|=.. .+.+..+++..++ .++|+=+=-|.|-.-..-...|- ..+|+.+.+.+..+.
T Consensus 102 NPGNig~~~~v~~vVe~Ak~-~g~piRIGVN~GSLek~~~~ky~---~pt~ealveSAl~~a 159 (361)
T COG0821 102 NPGNIGFKDRVREVVEAAKD-KGIPIRIGVNAGSLEKRLLEKYG---GPTPEALVESALEHA 159 (361)
T ss_pred CCcccCcHHHHHHHHHHHHH-cCCCEEEecccCchhHHHHHHhc---CCCHHHHHHHHHHHH
Confidence 8753 3557777776665 47898888899843111111221 347888888766654
No 107
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=83.52 E-value=16 Score=34.31 Aligned_cols=43 Identities=23% Similarity=0.348 Sum_probs=34.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCH
Q 021144 148 ADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNK 193 (317)
Q Consensus 148 ~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~ 193 (317)
.+|--|-+.+ .+.+....+.++.+..|...|+|+++||++-+.
T Consensus 243 S~G~~~G~a~---pS~anq~~~~~~i~~~~~~~G~d~fvfeAFdd~ 285 (305)
T COG5309 243 SDGRTYGSAV---PSVANQKIAVQEILNALRSCGYDVFVFEAFDDD 285 (305)
T ss_pred CCCCccCCcC---CChhHHHHHHHHHHhhhhccCccEEEeeecccc
Confidence 4454454544 478888899999999999999999999998764
No 108
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=83.45 E-value=1.8 Score=40.86 Aligned_cols=77 Identities=22% Similarity=0.167 Sum_probs=48.7
Q ss_pred HHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcC
Q 021144 171 RRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (317)
Q Consensus 171 ~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC 250 (317)
-+|+.+..++|+|+|+.|-+.+.+|.+.++++++ .|+.+-++-.. ++++-.+. .+.. .++.-|-.-+
T Consensus 169 I~Ra~AY~eAGAD~if~~al~~~e~i~~f~~av~-----~pl~~N~t~~g------~tp~~~~~-~L~~-~Gv~~V~~~~ 235 (289)
T COG2513 169 IERAQAYVEAGADAIFPEALTDLEEIRAFAEAVP-----VPLPANITEFG------KTPLLTVA-ELAE-LGVKRVSYGL 235 (289)
T ss_pred HHHHHHHHHcCCcEEccccCCCHHHHHHHHHhcC-----CCeeeEeeccC------CCCCcCHH-HHHh-cCceEEEECc
Confidence 3588999999999999999999999998888766 45555443221 22222232 3333 4666665555
Q ss_pred CChhhhHHHH
Q 021144 251 TSPRFIHGLI 260 (317)
Q Consensus 251 ~~p~~~~~~l 260 (317)
+....+...+
T Consensus 236 ~~~raa~~a~ 245 (289)
T COG2513 236 TAFRAALKAA 245 (289)
T ss_pred HHHHHHHHHH
Confidence 5444444433
No 109
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=83.10 E-value=36 Score=31.07 Aligned_cols=93 Identities=17% Similarity=0.239 Sum_probs=60.3
Q ss_pred HHHHHhCCCCEEEeccCC--CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCC
Q 021144 174 VLILANSGADLIAFETIP--NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT 251 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET~p--~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~ 251 (317)
++.+.++|+|.+++=-.| ..+|....++.+++.+ +.+.+.++ ..++++..-..+....++..+++|=.
T Consensus 94 i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~G--l~~~~~v~--------p~T~~e~l~~~~~~~~~~l~msv~~~ 163 (244)
T PRK13125 94 LNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKG--LKPVFFTS--------PKFPDLLIHRLSKLSPLFIYYGLRPA 163 (244)
T ss_pred HHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcC--CCEEEEEC--------CCCCHHHHHHHHHhCCCEEEEEeCCC
Confidence 556778999999874332 1567888888899877 66665552 45566655555555556666788764
Q ss_pred -C---hhhhHHHHHHHHhhC-CCcEEEEeCCC
Q 021144 252 -S---PRFIHGLILSVRKVT-SKPVIIYPNSG 278 (317)
Q Consensus 252 -~---p~~~~~~l~~l~~~~-~~pl~vyPNaG 278 (317)
+ +..+...++++++.. +.|+. -..|
T Consensus 164 ~g~~~~~~~~~~i~~lr~~~~~~~i~--v~gG 193 (244)
T PRK13125 164 TGVPLPVSVERNIKRVRNLVGNKYLV--VGFG 193 (244)
T ss_pred CCCCchHHHHHHHHHHHHhcCCCCEE--EeCC
Confidence 2 345566677777766 46643 4555
No 110
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=82.74 E-value=17 Score=32.59 Aligned_cols=99 Identities=16% Similarity=0.082 Sum_probs=51.9
Q ss_pred HHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCC-----C-cccCCCcHHHHHHHhhcCCCceEEE
Q 021144 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDG-----I-NVVSGDSILECASIADSCEQVVAVG 247 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~-----~-~l~~G~~l~~a~~~~~~~~~~~aiG 247 (317)
++.+.+.|+|.+++-|..- .....+.+++++.+ ..+++|+.++.. + .-.+..++.+.++.+.. .++..|.
T Consensus 89 ~~~~~~~Ga~~vilg~~~l-~~~~~l~ei~~~~~--~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~-~g~~~ii 164 (233)
T PRK00748 89 VEALLDAGVSRVIIGTAAV-KNPELVKEACKKFP--GKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFED-AGVKAII 164 (233)
T ss_pred HHHHHHcCCCEEEECchHH-hCHHHHHHHHHHhC--CCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHh-cCCCEEE
Confidence 4445557999988765331 11123344444443 346778776531 1 11123456677777765 3555444
Q ss_pred EcCC---Ch-h-hhHHHHHHHHhhCCCcEEEEeCCC
Q 021144 248 INCT---SP-R-FIHGLILSVRKVTSKPVIIYPNSG 278 (317)
Q Consensus 248 vNC~---~p-~-~~~~~l~~l~~~~~~pl~vyPNaG 278 (317)
++.. +. . .=..+++++.+..+.|++ .|+|
T Consensus 165 ~~~~~~~g~~~G~d~~~i~~l~~~~~ipvi--a~GG 198 (233)
T PRK00748 165 YTDISRDGTLSGPNVEATRELAAAVPIPVI--ASGG 198 (233)
T ss_pred EeeecCcCCcCCCCHHHHHHHHHhCCCCEE--EeCC
Confidence 4422 11 1 114667777777677754 4665
No 111
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=82.69 E-value=16 Score=32.79 Aligned_cols=98 Identities=16% Similarity=0.217 Sum_probs=65.4
Q ss_pred HHHHHhCCCCEEEecc-CCC--------------HHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhh
Q 021144 174 VLILANSGADLIAFET-IPN--------------KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET-~p~--------------~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~ 238 (317)
++.+.+.|+|.+-+-. +++ +++++.+++.+++.+ ..+ .|.+.+..+... +.+.++++.+.
T Consensus 73 ~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g--~~v--~~~~~~~~~~~~-~~~~~~~~~~~ 147 (237)
T PF00682_consen 73 VEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELG--YEV--AFGCEDASRTDP-EELLELAEALA 147 (237)
T ss_dssp HHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTT--SEE--EEEETTTGGSSH-HHHHHHHHHHH
T ss_pred HHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcC--Cce--EeCccccccccH-HHHHHHHHHHH
Confidence 3455678999986664 444 667777788888766 344 777777655422 33445555555
Q ss_pred cCCCceEEEEcCC----ChhhhHHHHHHHHhhCC-CcEEEEeCC
Q 021144 239 SCEQVVAVGINCT----SPRFIHGLILSVRKVTS-KPVIIYPNS 277 (317)
Q Consensus 239 ~~~~~~aiGvNC~----~p~~~~~~l~~l~~~~~-~pl~vyPNa 277 (317)
+ .+++.|.+.=+ .|..+..+++.+++..+ .||.+....
T Consensus 148 ~-~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hn 190 (237)
T PF00682_consen 148 E-AGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHN 190 (237)
T ss_dssp H-HT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBB
T ss_pred H-cCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecC
Confidence 4 47788877633 49999999999999876 788777643
No 112
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=82.65 E-value=34 Score=34.70 Aligned_cols=65 Identities=18% Similarity=0.207 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhCCCCEEEeccCC---CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhh
Q 021144 167 KEFHRRRVLILANSGADLIAFETIP---NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (317)
Q Consensus 167 ~~~h~~qi~~l~~~gvD~l~~ET~p---~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~ 238 (317)
.+||.+.++.+.+.|+|.|.+--+. ...++..++.++++.. ++|+ .|-+.++ .|..+...+..++
T Consensus 162 ~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~~-~~pi--~~H~Hnt----~GlA~An~laAie 229 (468)
T PRK12581 162 LNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAMT-NLPL--IVHTHAT----SGISQMTYLAAVE 229 (468)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhcc-CCeE--EEEeCCC----CccHHHHHHHHHH
Confidence 3578888999999999999887443 5778888888888743 4554 5555443 4666666666554
No 113
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=82.48 E-value=18 Score=37.24 Aligned_cols=107 Identities=18% Similarity=0.127 Sum_probs=72.2
Q ss_pred HHHHHHHhCCCCEEEeccCC--CHHH---------HHHHHHHHHHhCCCccEEEEEEEcCC-------------------
Q 021144 172 RRVLILANSGADLIAFETIP--NKLE---------AKAYAELLEEEGITIPAWFSFNSKDG------------------- 221 (317)
Q Consensus 172 ~qi~~l~~~gvD~l~~ET~p--~~~E---------a~a~~~~~~~~~~~~pv~iSf~~~~~------------------- 221 (317)
++++.++++|+|-+.+-|.- +.+| -..+-++.++++ +..+++|+..++.
T Consensus 338 e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg-~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~ 416 (538)
T PLN02617 338 EVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYG-NQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPG 416 (538)
T ss_pred HHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcC-CceEEEEEecCcCcccCccccccccccccccC
Confidence 55788888999999998832 2211 234555666665 5668888876532
Q ss_pred ---------------CcccCCCcHHHHHHHhhcCCCceEEEEcCCChh-----hhHHHHHHHHhhCCCcEEEEeCCCCc
Q 021144 222 ---------------INVVSGDSILECASIADSCEQVVAVGINCTSPR-----FIHGLILSVRKVTSKPVIIYPNSGET 280 (317)
Q Consensus 222 ---------------~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~p~-----~~~~~l~~l~~~~~~pl~vyPNaG~~ 280 (317)
++-..+.++.+.++.+.+ .++.-|-+||..-+ .=..+++.+++..+.|+++.--+|..
T Consensus 417 ~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~-~Gageil~t~id~DGt~~G~d~~l~~~v~~~~~ipviasGG~g~~ 494 (538)
T PLN02617 417 PNGEEYAWYQCTVKGGREGRPIGAYELAKAVEE-LGAGEILLNCIDCDGQGKGFDIELVKLVSDAVTIPVIASSGAGTP 494 (538)
T ss_pred cCcccceEEEEEEecCcccCCCCHHHHHHHHHh-cCCCEEEEeeccccccccCcCHHHHHHHHhhCCCCEEEECCCCCH
Confidence 111235567777877765 57888999997432 22567788888889999988877753
No 114
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=82.46 E-value=19 Score=38.85 Aligned_cols=94 Identities=18% Similarity=0.198 Sum_probs=65.3
Q ss_pred HHhCCCCEE-EeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCc---HH---HHHHHhhcCCCceEEEEc
Q 021144 177 LANSGADLI-AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDS---IL---ECASIADSCEQVVAVGIN 249 (317)
Q Consensus 177 l~~~gvD~l-~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~---l~---~a~~~~~~~~~~~aiGvN 249 (317)
-.++|+|+| +|-.+..++.++.+++++++.+ +-+=++++. .+..|..+.+ +. ..++.+.+ .+...+||-
T Consensus 639 aa~~GIDvFRiFDsLNwv~~M~vaidAV~e~g--kv~EatiCY-TGDildp~r~kY~L~YY~~lA~el~~-~GaHIlaIK 714 (1149)
T COG1038 639 AAKSGIDVFRIFDSLNWVEQMRVAIDAVREAG--KVAEATICY-TGDILDPGRKKYTLDYYVKLAKELEK-AGAHILAIK 714 (1149)
T ss_pred HHhcCccEEEeehhhcchhhhhhHHHHHHhcC--CeEEEEEEe-ccccCCCCcccccHHHHHHHHHHHHh-cCCcEEEeh
Confidence 456999999 7889999999999999999987 444444433 2223333332 22 33444443 577778887
Q ss_pred CC----ChhhhHHHHHHHHhhCCCcEEEE
Q 021144 250 CT----SPRFIHGLILSVRKVTSKPVIIY 274 (317)
Q Consensus 250 C~----~p~~~~~~l~~l~~~~~~pl~vy 274 (317)
=. .|.....++..|+...+.|+=+.
T Consensus 715 DMAGLLKP~AA~~Li~aLr~~~dlPIHlH 743 (1149)
T COG1038 715 DMAGLLKPAAAYRLISALRETVDLPIHLH 743 (1149)
T ss_pred hhhhccCHHHHHHHHHHHHHhcCCceEEe
Confidence 63 48888999999999888887554
No 115
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=82.34 E-value=42 Score=31.09 Aligned_cols=41 Identities=17% Similarity=0.033 Sum_probs=30.1
Q ss_pred CCccccccccCCChHHHHHHHHHHHHhhccccccccccccH
Q 021144 41 NDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATI 81 (317)
Q Consensus 41 ~~~lws~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~as~ 81 (317)
.+..|+..-....|+.+.+.-+.++++||++|-.+-...++
T Consensus 9 tpdSF~dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p 49 (257)
T TIGR01496 9 TPDSFSDGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRP 49 (257)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC
Confidence 33445555445678888888889999999999998655544
No 116
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=82.07 E-value=24 Score=32.99 Aligned_cols=99 Identities=18% Similarity=0.193 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhCCCCEEEe------------ccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHH
Q 021144 169 FHRRRVLILANSGADLIAF------------ETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASI 236 (317)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~------------ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~ 236 (317)
.|...++.+.++|+|.|=+ +-..+.+.+..+++.+++.. ++|+++-++... +.+.+.++.
T Consensus 103 ~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~-~~Pv~vKl~~~~-------~~~~~~a~~ 174 (296)
T cd04740 103 EFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT-DVPVIVKLTPNV-------TDIVEIARA 174 (296)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc-CCCEEEEeCCCc-------hhHHHHHHH
Confidence 3555677777889999855 22345677778888888763 689998875321 235566665
Q ss_pred hhcCCCceEE-EEcCCC-----h--------------------hhhHHHHHHHHhhCCCcEEEEeCCC
Q 021144 237 ADSCEQVVAV-GINCTS-----P--------------------RFIHGLILSVRKVTSKPVIIYPNSG 278 (317)
Q Consensus 237 ~~~~~~~~ai-GvNC~~-----p--------------------~~~~~~l~~l~~~~~~pl~vyPNaG 278 (317)
+.+ .++++| -+|++. + ......++.+++..+.|++ .|+|
T Consensus 175 ~~~-~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii--~~GG 239 (296)
T cd04740 175 AEE-AGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPII--GVGG 239 (296)
T ss_pred HHH-cCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEE--EECC
Confidence 654 467765 345531 0 0123567777777778865 4665
No 117
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=81.89 E-value=12 Score=35.95 Aligned_cols=60 Identities=18% Similarity=0.272 Sum_probs=38.2
Q ss_pred CccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCC-h-----------hhhHHHHHHHHhhCCCcEEEEe
Q 021144 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTS-P-----------RFIHGLILSVRKVTSKPVIIYP 275 (317)
Q Consensus 209 ~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~-p-----------~~~~~~l~~l~~~~~~pl~vyP 275 (317)
+.|+++|+...+ -..+.++++.+.+ .++++|=+||++ | +.+.++++.+++..++|++|.=
T Consensus 99 ~~pvi~si~g~~------~~~~~~~a~~~~~-~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl 170 (325)
T cd04739 99 SIPVIASLNGVS------AGGWVDYARQIEE-AGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKL 170 (325)
T ss_pred CCeEEEEeCCCC------HHHHHHHHHHHHh-cCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEc
Confidence 478998873211 1233466666655 468888888864 2 1235677777777788988874
No 118
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=81.79 E-value=15 Score=33.84 Aligned_cols=97 Identities=13% Similarity=0.087 Sum_probs=60.4
Q ss_pred HHHHHhCCCCEEEec-cCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCC-
Q 021144 174 VLILANSGADLIAFE-TIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT- 251 (317)
Q Consensus 174 i~~l~~~gvD~l~~E-T~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~- 251 (317)
++...+.|+|.+-+- ..++..+++.+++.+++.+ ..+.+++ .+-.+. +=.-+.+.++.+.+ .+++.|.+-=+
T Consensus 91 i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G--~~v~~~~--~~~~~~-~~~~~~~~~~~~~~-~G~d~i~l~DT~ 164 (263)
T cd07943 91 LKMAADLGVDVVRVATHCTEADVSEQHIGAARKLG--MDVVGFL--MMSHMA-SPEELAEQAKLMES-YGADCVYVTDSA 164 (263)
T ss_pred HHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCC--CeEEEEE--EeccCC-CHHHHHHHHHHHHH-cCCCEEEEcCCC
Confidence 445567899988654 3445677788888888866 4444444 222221 11223344455444 47777766422
Q ss_pred ---ChhhhHHHHHHHHhhCCC-cEEEEeC
Q 021144 252 ---SPRFIHGLILSVRKVTSK-PVIIYPN 276 (317)
Q Consensus 252 ---~p~~~~~~l~~l~~~~~~-pl~vyPN 276 (317)
.|..+..+++.+++..+. ||.+.-.
T Consensus 165 G~~~P~~v~~lv~~l~~~~~~~~l~~H~H 193 (263)
T cd07943 165 GAMLPDDVRERVRALREALDPTPVGFHGH 193 (263)
T ss_pred CCcCHHHHHHHHHHHHHhCCCceEEEEec
Confidence 499999999999988765 7776553
No 119
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=81.49 E-value=22 Score=36.00 Aligned_cols=99 Identities=12% Similarity=0.213 Sum_probs=65.1
Q ss_pred HHHHHhCCCCEE-EeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCC-
Q 021144 174 VLILANSGADLI-AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT- 251 (317)
Q Consensus 174 i~~l~~~gvD~l-~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~- 251 (317)
++...+.|+|+| +|--+.+++-++..++++++.+...-+.++++..+... =.-+.+.++.+.+ .+++.|.|-=+
T Consensus 111 v~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t---~~y~~~~a~~l~~-~Gad~I~IkDta 186 (468)
T PRK12581 111 ISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHT---LNYYLSLVKELVE-MGADSICIKDMA 186 (468)
T ss_pred HHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCc---HHHHHHHHHHHHH-cCCCEEEECCCC
Confidence 556677999998 45566678888888899998873333445554433111 1123445555544 57777776544
Q ss_pred ---ChhhhHHHHHHHHhhCCCcEEEEeC
Q 021144 252 ---SPRFIHGLILSVRKVTSKPVIIYPN 276 (317)
Q Consensus 252 ---~p~~~~~~l~~l~~~~~~pl~vyPN 276 (317)
.|..+..+++.+++..+.||.+.-.
T Consensus 187 G~l~P~~v~~Lv~alk~~~~~pi~~H~H 214 (468)
T PRK12581 187 GILTPKAAKELVSGIKAMTNLPLIVHTH 214 (468)
T ss_pred CCcCHHHHHHHHHHHHhccCCeEEEEeC
Confidence 3899999999998877788776543
No 120
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=81.39 E-value=6 Score=38.53 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=42.1
Q ss_pred CCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCC-CHHHHHHHHHHHHHhCCCc
Q 021144 132 RPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIP-NKLEAKAYAELLEEEGITI 210 (317)
Q Consensus 132 ~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p-~~~Ea~a~~~~~~~~~~~~ 210 (317)
.+.+|++++||... ..++++.|+++|||+|++-+-. +.......++.+++..+++
T Consensus 95 ~~l~V~aavg~~~~------------------------~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~ 150 (352)
T PF00478_consen 95 GRLLVAAAVGTRDD------------------------DFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDV 150 (352)
T ss_dssp SCBCEEEEEESSTC------------------------HHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTS
T ss_pred ccceEEEEecCCHH------------------------HHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCc
Confidence 47899999999632 3468889999999999998543 3444455666677766578
Q ss_pred cEEEE
Q 021144 211 PAWFS 215 (317)
Q Consensus 211 pv~iS 215 (317)
|+++-
T Consensus 151 ~viaG 155 (352)
T PF00478_consen 151 PVIAG 155 (352)
T ss_dssp EEEEE
T ss_pred eEEec
Confidence 88853
No 121
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=81.36 E-value=14 Score=34.78 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=47.3
Q ss_pred HHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcC
Q 021144 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (317)
Q Consensus 172 ~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC 250 (317)
+|+...+++|+|.|.+.+| +.++++.+++.+++.+.+..+.+-. .-|-+++.+.+++. .+++.|.+-.
T Consensus 193 eea~~a~~agaDiI~LDn~-~~e~l~~~v~~l~~~~~~~~~~lea--------SGGI~~~ni~~yA~--tGvD~Is~ga 260 (278)
T PRK08385 193 EDALKAAKAGADIIMLDNM-TPEEIREVIEALKREGLRERVKIEV--------SGGITPENIEEYAK--LDVDVISLGA 260 (278)
T ss_pred HHHHHHHHcCcCEEEECCC-CHHHHHHHHHHHHhcCcCCCEEEEE--------ECCCCHHHHHHHHH--cCCCEEEeCh
Confidence 3455567799999999999 5889999999887754111232222 24677777777665 5888888766
No 122
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=81.31 E-value=33 Score=29.21 Aligned_cols=24 Identities=8% Similarity=0.098 Sum_probs=21.3
Q ss_pred ChHHHHHHHHHHHHhhcccccccc
Q 021144 53 SPHLVRKVHLDYLDAGANIIITAS 76 (317)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~TnT 76 (317)
+.+.++++.+..+++|++.|.++-
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g 34 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP 34 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH
Confidence 788899999999999999888774
No 123
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=81.25 E-value=52 Score=31.48 Aligned_cols=204 Identities=21% Similarity=0.278 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHhhccccccccccccHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCC
Q 021144 55 HLVRKVHLDYLDAGANIIITASYQATIQGFEAK-GFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRP 133 (317)
Q Consensus 55 e~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~~-g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (317)
+.+.+.-++-++.|-..|.. |+.-....++. |-..-.-.-++++|++.-|+.. . +
T Consensus 61 d~l~~~~~~~~~lGi~av~L--Fgvp~~~~Kd~~gs~A~~~~givqravr~ik~~~---------------------p-~ 116 (330)
T COG0113 61 DRLVEEAEELVDLGIPAVIL--FGVPDDSKKDETGSEAYDPDGIVQRAVRAIKEAF---------------------P-E 116 (330)
T ss_pred HHHHHHHHHHHhcCCCEEEE--eCCCcccccCcccccccCCCChHHHHHHHHHHhC---------------------C-C
Confidence 45555556677888776543 55554433332 2111112357888887776543 1 3
Q ss_pred eEEEE--eeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhC-CCc
Q 021144 134 VLVAA--SVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEG-ITI 210 (317)
Q Consensus 134 ~~Vag--siGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~-~~~ 210 (317)
..|.. |+-||-..=++|--+.+.| +.-++-.+.+..++-..+++|+|+++==-|-+- -+.+|.+++.+.+ .+.
T Consensus 117 l~iitDvcLceyT~HGHcGil~~~~~---V~ND~Tle~l~k~Avs~AeAGAdivAPSdMMDG-rV~aIR~aLd~ag~~~v 192 (330)
T COG0113 117 LVVITDVCLCEYTDHGHCGILDDGGY---VDNDETLEILAKQAVSQAEAGADIVAPSDMMDG-RVGAIREALDEAGFIDV 192 (330)
T ss_pred eEEEeeecccCCcCCCccccccCCCe---ecchHHHHHHHHHHHHHHHcCCCeecccccccc-hHHHHHHHHHHcCCCcc
Confidence 33433 3456655544444333322 455777778888888889999999985555554 3567888887765 344
Q ss_pred cEEEEEEEc----------C---------C--CcccCCCcHHHHHHHhh--cCCCceEEEEcCCChhhhHHHHHHHHhhC
Q 021144 211 PAWFSFNSK----------D---------G--INVVSGDSILECASIAD--SCEQVVAVGINCTSPRFIHGLILSVRKVT 267 (317)
Q Consensus 211 pv~iSf~~~----------~---------~--~~l~~G~~l~~a~~~~~--~~~~~~aiGvNC~~p~~~~~~l~~l~~~~ 267 (317)
|++ |.+.+ + + ..-.|=-...+|++.+. -..|.+.+.|-=.-| -+.+++.+++.+
T Consensus 193 ~IM-sYsaKyASafYGPFRdAa~Sap~~gdrktYQmDpaN~~EAlrE~~lD~~EGAD~lMVKPal~--YLDIi~~vk~~~ 269 (330)
T COG0113 193 PIM-SYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREIELDIEEGADILMVKPALP--YLDIIRRVKEEF 269 (330)
T ss_pred eee-ehhHHHhhhccccHHHHhhcccccCCcceeccCCcCHHHHHHHHHhhHhcCCcEEEEcCCch--HHHHHHHHHHhc
Confidence 544 44322 0 0 00112222334544432 124788888876543 356788888889
Q ss_pred CCcEEEEeCCCCc---ccccccccc
Q 021144 268 SKPVIIYPNSGET---YNAELKKWV 289 (317)
Q Consensus 268 ~~pl~vyPNaG~~---~d~~~~~w~ 289 (317)
+.|+.+|--+||- .-...+.|.
T Consensus 270 ~lP~~AYqVSGEYaMikAAa~nGwi 294 (330)
T COG0113 270 NLPVAAYQVSGEYAMIKAAAQNGWI 294 (330)
T ss_pred CCCeEEEecchHHHHHHHHHHcCCc
Confidence 9999999999962 223346775
No 124
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=80.99 E-value=49 Score=31.05 Aligned_cols=130 Identities=11% Similarity=0.024 Sum_probs=76.6
Q ss_pred HHhhccccccccccccHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEeeCCC
Q 021144 65 LDAGANIIITASYQATIQGFE-AKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSY 143 (317)
Q Consensus 65 l~AGAdiI~TnTy~as~~~l~-~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~ 143 (317)
+++|++.|.-. +.+|..... ..+.+.+++.+.....++.|++. ...|..++ -
T Consensus 84 ~~~g~~~v~i~-~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~------------------------g~~v~~~~--e 136 (279)
T cd07947 84 KEMGLKETGIL-MSVSDYHIFKKLKMTREEAMEKYLEIVEEALDH------------------------GIKPRCHL--E 136 (279)
T ss_pred HHcCcCEEEEE-EcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHC------------------------CCeEEEEE--E
Confidence 46788855442 345554443 44777776666666666666531 23344444 1
Q ss_pred cCccCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHhCCCC-EE-EeccCCCH---------HHHHHHHHHHHHhCCCcc
Q 021144 144 GAYLADGSEYSGDYGDAVSL-ETLKEFHRRRVLILANSGAD-LI-AFETIPNK---------LEAKAYAELLEEEGITIP 211 (317)
Q Consensus 144 g~~l~~gseY~g~y~~~~s~-~el~~~h~~qi~~l~~~gvD-~l-~~ET~p~~---------~Ea~a~~~~~~~~~~~~p 211 (317)
++ .+ .+. +...++-.+.++...+.|+| .| +.-|+-.. .++..+++.+++.. +.|
T Consensus 137 d~------------~r-~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~-~~p 202 (279)
T cd07947 137 DI------------TR-ADIYGFVLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDC-GVP 202 (279)
T ss_pred cc------------cC-CCcccchHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhc-CCC
Confidence 11 00 122 23444555556666679999 45 67787632 67888888887642 244
Q ss_pred -EEEEEEEcCCCcccCCCcHHHHHHHhhc
Q 021144 212 -AWFSFNSKDGINVVSGDSILECASIADS 239 (317)
Q Consensus 212 -v~iSf~~~~~~~l~~G~~l~~a~~~~~~ 239 (317)
+-+++-+.++ .|..+..++..+..
T Consensus 203 ~~~l~~H~Hn~----~Gla~AN~laA~~a 227 (279)
T cd07947 203 SENLEWHGHND----FYKAVANAVAAWLY 227 (279)
T ss_pred CceEEEEecCC----CChHHHHHHHHHHh
Confidence 5567777655 57788888877764
No 125
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=80.85 E-value=18 Score=37.71 Aligned_cols=99 Identities=17% Similarity=0.206 Sum_probs=65.9
Q ss_pred HHHHHhCCCCEE-EeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCC-
Q 021144 174 VLILANSGADLI-AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT- 251 (317)
Q Consensus 174 i~~l~~~gvD~l-~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~- 251 (317)
++...+.|+|+| +|-.+.+++-++..++++++.+ +-+..++++.... .-+=+.+.+.++.+.+ .+++.|.|-=+
T Consensus 102 v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G--~~~~~~i~yt~sp-~~t~e~~~~~ak~l~~-~Gad~I~IkDta 177 (596)
T PRK14042 102 VKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHK--KHAQGAICYTTSP-VHTLDNFLELGKKLAE-MGCDSIAIKDMA 177 (596)
T ss_pred HHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcC--CEEEEEEEecCCC-CCCHHHHHHHHHHHHH-cCCCEEEeCCcc
Confidence 344667999999 6677888888999999999987 4454444332211 1111223344544544 57777777543
Q ss_pred ---ChhhhHHHHHHHHhhCCCcEEEEeC
Q 021144 252 ---SPRFIHGLILSVRKVTSKPVIIYPN 276 (317)
Q Consensus 252 ---~p~~~~~~l~~l~~~~~~pl~vyPN 276 (317)
.|..+..+++.+++..+.||.+.-.
T Consensus 178 G~l~P~~v~~lv~alk~~~~ipi~~H~H 205 (596)
T PRK14042 178 GLLTPTVTVELYAGLKQATGLPVHLHSH 205 (596)
T ss_pred cCCCHHHHHHHHHHHHhhcCCEEEEEeC
Confidence 4899999999999887788776543
No 126
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=80.53 E-value=11 Score=35.70 Aligned_cols=65 Identities=15% Similarity=0.186 Sum_probs=45.7
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcC
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC 250 (317)
|+...+++|+|+|.+..|+ +++++.+++.+++...+.|+.+| -|-+++.+.+++. .+++.|-+-+
T Consensus 208 ea~eA~~~GaD~I~LDn~~-~e~l~~av~~~~~~~~~i~leAs----------GGIt~~ni~~ya~--tGvD~Isvgs 272 (288)
T PRK07428 208 QVQEALEYGADIIMLDNMP-VDLMQQAVQLIRQQNPRVKIEAS----------GNITLETIRAVAE--TGVDYISSSA 272 (288)
T ss_pred HHHHHHHcCCCEEEECCCC-HHHHHHHHHHHHhcCCCeEEEEE----------CCCCHHHHHHHHH--cCCCEEEEch
Confidence 3444557999999999876 68899988888764434554443 3667777776664 5788777665
No 127
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=80.03 E-value=9.6 Score=39.56 Aligned_cols=50 Identities=12% Similarity=0.169 Sum_probs=38.9
Q ss_pred HHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHH---hCCCccEEEEEEEcC
Q 021144 170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELLEE---EGITIPAWFSFNSKD 220 (317)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~---~~~~~pv~iSf~~~~ 220 (317)
--+|+..|.++|+|++-+ |+|+.+|++++-...+. .+.++|++.-+-|+.
T Consensus 43 tv~Qi~~l~~aGceiVRv-tv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~ 95 (611)
T PRK02048 43 CVAQAKRIIDAGGEYVRL-TTQGVREAENLMNINIGLRSQGYMVPLVADVHFNP 95 (611)
T ss_pred HHHHHHHHHHcCCCEEEE-cCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCc
Confidence 445899999999999974 89999999887655443 455699998887754
No 128
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=80.03 E-value=31 Score=38.84 Aligned_cols=102 Identities=17% Similarity=0.168 Sum_probs=68.9
Q ss_pred HHHHHhCCCCEE-EeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHH---HHHHHhhcCCCceEEEEc
Q 021144 174 VLILANSGADLI-AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSIL---ECASIADSCEQVVAVGIN 249 (317)
Q Consensus 174 i~~l~~~gvD~l-~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~---~a~~~~~~~~~~~aiGvN 249 (317)
++...+.|+|+| +|-.+.++..++.+++++++.+...-.-|++|-+--.-.+.-.+++ +.++.+.+ .+++.|.|-
T Consensus 631 ~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~-~Gad~I~ik 709 (1143)
T TIGR01235 631 VKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEK-AGAHILGIK 709 (1143)
T ss_pred HHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHH-cCCCEEEEC
Confidence 334667999999 7889999999999999999987433444455421100011223444 45555544 577877776
Q ss_pred CC----ChhhhHHHHHHHHhhCCCcEEEEeC
Q 021144 250 CT----SPRFIHGLILSVRKVTSKPVIIYPN 276 (317)
Q Consensus 250 C~----~p~~~~~~l~~l~~~~~~pl~vyPN 276 (317)
=+ .|..+..+++.+++..+.||-+.-.
T Consensus 710 Dt~Gll~P~~~~~Lv~~lk~~~~~pi~~H~H 740 (1143)
T TIGR01235 710 DMAGLLKPAAAKLLIKALREKTDLPIHFHTH 740 (1143)
T ss_pred CCcCCcCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 54 3899999999999887888876653
No 129
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=79.99 E-value=45 Score=29.91 Aligned_cols=144 Identities=19% Similarity=0.163 Sum_probs=85.1
Q ss_pred CChHHHHHHHHHHHHhhccccccccccccHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCC
Q 021144 52 SSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISS 131 (317)
Q Consensus 52 ~~Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~ 131 (317)
-.++.++........+|.++|....-..........+.+.++..+....+++.||+.
T Consensus 64 ~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~----------------------- 120 (237)
T PF00682_consen 64 ANEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKEL----------------------- 120 (237)
T ss_dssp SCHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHT-----------------------
T ss_pred ehHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhc-----------------------
Confidence 566778887777889999988866444333334455666555555555555555432
Q ss_pred CCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec-cCC--CHHHHHHHHHHHHHhCC
Q 021144 132 RPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFE-TIP--NKLEAKAYAELLEEEGI 208 (317)
Q Consensus 132 ~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~E-T~p--~~~Ea~a~~~~~~~~~~ 208 (317)
...| ++++.-. .. .+.+++.+ .++.+.+.|+|.|.+- |.- ...++.-+++.+++.-+
T Consensus 121 -g~~v--~~~~~~~---------~~----~~~~~~~~----~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~ 180 (237)
T PF00682_consen 121 -GYEV--AFGCEDA---------SR----TDPEELLE----LAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALP 180 (237)
T ss_dssp -TSEE--EEEETTT---------GG----SSHHHHHH----HHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHST
T ss_pred -CCce--EeCcccc---------cc----ccHHHHHH----HHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhcc
Confidence 1223 3333211 11 35555544 4556777799988766 554 57778888888887542
Q ss_pred CccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEE
Q 021144 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAV 246 (317)
Q Consensus 209 ~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~ai 246 (317)
+ +-+.|-+.++ .|..+..++..+.. |++.|
T Consensus 181 ~--~~l~~H~Hnd----~Gla~An~laA~~a--Ga~~i 210 (237)
T PF00682_consen 181 D--IPLGFHAHND----LGLAVANALAALEA--GADRI 210 (237)
T ss_dssp T--SEEEEEEBBT----TS-HHHHHHHHHHT--T-SEE
T ss_pred C--CeEEEEecCC----ccchhHHHHHHHHc--CCCEE
Confidence 2 6667777654 47778888877763 44443
No 130
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=79.77 E-value=39 Score=30.75 Aligned_cols=92 Identities=16% Similarity=0.213 Sum_probs=54.0
Q ss_pred HHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCC-
Q 021144 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTS- 252 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~- 252 (317)
.+.+.+.|---++.+- .++-.+..+..+++. +.|+.+++.-. +-+.+.++++.+.. ..+.|-+||..
T Consensus 41 a~~~~~~~~~ef~~~~--~~~~~~~~~~~~~~~--~~p~~vqi~g~------~~~~~~~aa~~~~~--~~~~ielN~gCP 108 (233)
T cd02911 41 ARKLVKRGRKEFLPDD--PLEFIEGEIKALKDS--NVLVGVNVRSS------SLEPLLNAAALVAK--NAAILEINAHCR 108 (233)
T ss_pred HHHHHhcCCccccccc--hHHHHHHHHHHhhcc--CCeEEEEecCC------CHHHHHHHHHHHhh--cCCEEEEECCCC
Confidence 3445555554444333 233333344445554 37999888211 12334455665644 35899999974
Q ss_pred ----------------hhhhHHHHHHHHhhCCCcEEEEeCCC
Q 021144 253 ----------------PRFIHGLILSVRKVTSKPVIIYPNSG 278 (317)
Q Consensus 253 ----------------p~~~~~~l~~l~~~~~~pl~vyPNaG 278 (317)
|+.+..+++.+++ .+.|+.|.=..|
T Consensus 109 ~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g 149 (233)
T cd02911 109 QPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAG 149 (233)
T ss_pred cHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCC
Confidence 3445667777776 589999988776
No 131
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=79.62 E-value=8.9 Score=40.49 Aligned_cols=51 Identities=27% Similarity=0.373 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHH---HHhCCCccEEEEEEEcC
Q 021144 169 FHRRRVLILANSGADLIAFETIPNKLEAKAYAELL---EEEGITIPAWFSFNSKD 220 (317)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~---~~~~~~~pv~iSf~~~~ 220 (317)
.--+|+..|.++|+|++-+ |+|+.+|++++-... ++.+.++|++.-+-|+.
T Consensus 111 atv~Qi~~l~~aGceiVRv-tv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~ 164 (733)
T PLN02925 111 ATVDQVMRIADKGADIVRI-TVQGKKEADACFEIKNTLVQKGYNIPLVADIHFAP 164 (733)
T ss_pred HHHHHHHHHHHcCCCEEEE-cCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCH
Confidence 3446899999999999984 899999998866543 33455799998776643
No 132
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=79.58 E-value=29 Score=36.28 Aligned_cols=99 Identities=13% Similarity=0.167 Sum_probs=66.2
Q ss_pred HHHHHhCCCCEE-EeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCC-
Q 021144 174 VLILANSGADLI-AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT- 251 (317)
Q Consensus 174 i~~l~~~gvD~l-~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~- 251 (317)
++...+.|+|.| +|-.+.++..++.+++++++.+...-+.++++..... +=.-+.+.++.+.+ .+++.|.|-=+
T Consensus 103 v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~---~~~~~~~~a~~l~~-~Gad~i~i~Dt~ 178 (593)
T PRK14040 103 VERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVH---TLQTWVDLAKQLED-MGVDSLCIKDMA 178 (593)
T ss_pred HHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCcc---CHHHHHHHHHHHHH-cCCCEEEECCCC
Confidence 555677999987 5567778888889999999877322234555443311 11224455555554 47777766543
Q ss_pred ---ChhhhHHHHHHHHhhCCCcEEEEeC
Q 021144 252 ---SPRFIHGLILSVRKVTSKPVIIYPN 276 (317)
Q Consensus 252 ---~p~~~~~~l~~l~~~~~~pl~vyPN 276 (317)
.|..+..+++.+++..+.||.+.-.
T Consensus 179 G~l~P~~~~~lv~~lk~~~~~pi~~H~H 206 (593)
T PRK14040 179 GLLKPYAAYELVSRIKKRVDVPLHLHCH 206 (593)
T ss_pred CCcCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 3899999999999888888876654
No 133
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=79.56 E-value=33 Score=34.53 Aligned_cols=98 Identities=12% Similarity=0.137 Sum_probs=62.0
Q ss_pred HHHHHhCCCCEEEe-ccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCC-
Q 021144 174 VLILANSGADLIAF-ETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT- 251 (317)
Q Consensus 174 i~~l~~~gvD~l~~-ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~- 251 (317)
++...++|+|.|-+ -.+.+...++.+++.+++.+ ..+-+++++....+ .+-.-+.+.++.+.+ .+++.|.+-=+
T Consensus 102 v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G--~~v~~~i~~t~~p~-~~~~~~~~~a~~l~~-~Gad~I~i~Dt~ 177 (448)
T PRK12331 102 VQKSVENGIDIIRIFDALNDVRNLETAVKATKKAG--GHAQVAISYTTSPV-HTIDYFVKLAKEMQE-MGADSICIKDMA 177 (448)
T ss_pred HHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcC--CeEEEEEEeecCCC-CCHHHHHHHHHHHHH-cCCCEEEEcCCC
Confidence 44456789998844 45566777777888888876 44444443332222 111223444555544 47777766543
Q ss_pred ---ChhhhHHHHHHHHhhCCCcEEEEe
Q 021144 252 ---SPRFIHGLILSVRKVTSKPVIIYP 275 (317)
Q Consensus 252 ---~p~~~~~~l~~l~~~~~~pl~vyP 275 (317)
.|..+..+++.+++..+.||.+.-
T Consensus 178 G~l~P~~v~~lv~alk~~~~~pi~~H~ 204 (448)
T PRK12331 178 GILTPYVAYELVKRIKEAVTVPLEVHT 204 (448)
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 489999999999988778887655
No 134
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=79.51 E-value=25 Score=35.24 Aligned_cols=67 Identities=9% Similarity=0.134 Sum_probs=44.4
Q ss_pred HHHHHHHHHhCCCCEEEeccCC-CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEE
Q 021144 170 HRRRVLILANSGADLIAFETIP-NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (317)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET~p-~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGv 248 (317)
..++++.|+++|+|+|.+-+-. +-.-+...++.+++..+++|+++. +..+.+++...++ .++++|.+
T Consensus 225 ~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G----------~v~t~~~a~~l~~--aGad~i~v 292 (450)
T TIGR01302 225 DKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAG----------NVATAEQAKALID--AGADGLRV 292 (450)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEE----------eCCCHHHHHHHHH--hCCCEEEE
Confidence 3457889999999999987632 333455556667766457898872 3456666666665 36777654
No 135
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=79.27 E-value=66 Score=32.42 Aligned_cols=64 Identities=16% Similarity=0.259 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhCCCCEEEeccCC---CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhh
Q 021144 168 EFHRRRVLILANSGADLIAFETIP---NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (317)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~ET~p---~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~ 238 (317)
++|.+.++.+.+.|+|.|.+=-+. ...++..++.++++.- ++| +.|-+.++ .|..+..++..++
T Consensus 154 ~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~-~~p--i~~H~Hnt----~GlA~AN~laAie 220 (448)
T PRK12331 154 DYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAV-TVP--LEVHTHAT----SGIAEMTYLKAIE 220 (448)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhc-CCe--EEEEecCC----CCcHHHHHHHHHH
Confidence 456777888899999999876333 5678888888888753 355 45555443 4666666666554
No 136
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=79.25 E-value=60 Score=31.01 Aligned_cols=61 Identities=15% Similarity=0.187 Sum_probs=39.5
Q ss_pred CCceEEEEcCCC---------h-----------------hhhHHHHHHHHhhC--CCcEEEEeCCCCccccccccccccC
Q 021144 241 EQVVAVGINCTS---------P-----------------RFIHGLILSVRKVT--SKPVIIYPNSGETYNAELKKWVVSF 292 (317)
Q Consensus 241 ~~~~aiGvNC~~---------p-----------------~~~~~~l~~l~~~~--~~pl~vyPNaG~~~d~~~~~w~~~~ 292 (317)
.+.++|=|||.+ | ..+..+++.+++.. +.||++.-|..+..+ .
T Consensus 166 aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~---------~ 236 (336)
T cd02932 166 AGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVE---------G 236 (336)
T ss_pred cCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCC---------C
Confidence 589999999853 2 23457778888876 678988877632111 1
Q ss_pred CCChhhHHHHHHHHHHcc
Q 021144 293 SLHFFPLELILNPFASCR 310 (317)
Q Consensus 293 ~~~~~~~~~~~~~w~~~~ 310 (317)
..++++..++++.+.+.|
T Consensus 237 g~~~~e~~~ia~~Le~~g 254 (336)
T cd02932 237 GWDLEDSVELAKALKELG 254 (336)
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 134566667777666666
No 137
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=79.16 E-value=56 Score=30.56 Aligned_cols=114 Identities=21% Similarity=0.301 Sum_probs=65.4
Q ss_pred CeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccE
Q 021144 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPA 212 (317)
Q Consensus 133 ~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv 212 (317)
+.+|.+++ ||+. |. .+.++..+ .-.+.+.++|+|.+-+|--. |...+++.+-+.+ +||
T Consensus 77 ~~~vv~Dm-Pf~s-----------y~--~s~e~av~---nA~rl~ke~GadaVKlEGg~---~~~~~i~~l~~~G--IPV 134 (261)
T PF02548_consen 77 NAFVVADM-PFGS-----------YQ--ASPEQAVR---NAGRLMKEAGADAVKLEGGA---EIAETIKALVDAG--IPV 134 (261)
T ss_dssp SSEEEEE---TTS-----------ST--SSHHHHHH---HHHHHHHTTT-SEEEEEBSG---GGHHHHHHHHHTT----E
T ss_pred CceEEecC-Cccc-----------cc--CCHHHHHH---HHHHHHHhcCCCEEEeccch---hHHHHHHHHHHCC--CcE
Confidence 56888887 5654 32 25555443 33444556999999999654 4444555565655 999
Q ss_pred EEEEEEcCC------CcccCCCcHHHHHHHhhc-----CCCceEEEEcCCChhhhHHHHHHHHhhCCCcEE
Q 021144 213 WFSFNSKDG------INVVSGDSILECASIADS-----CEQVVAVGINCTSPRFIHGLILSVRKVTSKPVI 272 (317)
Q Consensus 213 ~iSf~~~~~------~~l~~G~~l~~a~~~~~~-----~~~~~aiGvNC~~p~~~~~~l~~l~~~~~~pl~ 272 (317)
+-.+-+.+. |.=.-|.+.+++.+.++. ..++.++-+-|+..+ +-+.+.+..+.|.+
T Consensus 135 ~gHiGLtPQ~~~~~GGyr~qGk~~~~a~~l~~~A~ale~AGaf~ivlE~vp~~----la~~It~~l~IPtI 201 (261)
T PF02548_consen 135 MGHIGLTPQSVHQLGGYRVQGKTAEEAEKLLEDAKALEEAGAFAIVLECVPAE----LAKAITEALSIPTI 201 (261)
T ss_dssp EEEEES-GGGHHHHTSS--CSTSHHHHHHHHHHHHHHHHHT-SEEEEESBBHH----HHHHHHHHSSS-EE
T ss_pred EEEecCchhheeccCCceEEecCHHHHHHHHHHHHHHHHcCccEEeeecCHHH----HHHHHHHhCCCCEE
Confidence 998876543 222356676666555432 258889999999643 34455666678865
No 138
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=79.01 E-value=3.6 Score=39.90 Aligned_cols=63 Identities=17% Similarity=0.336 Sum_probs=44.6
Q ss_pred CCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCChh-----------------hhHHHHHHHHhhCCCc
Q 021144 208 ITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPR-----------------FIHGLILSVRKVTSKP 270 (317)
Q Consensus 208 ~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~p~-----------------~~~~~l~~l~~~~~~p 270 (317)
.+.|.++.|.-+ |=+.+.+|++.+.. -.++|++||..|. .+.++++.++..++.|
T Consensus 72 ~D~PLIvQf~~n------dp~~ll~Aa~lv~~--y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~p 143 (358)
T KOG2335|consen 72 EDRPLIVQFGGN------DPENLLKAARLVQP--YCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVP 143 (358)
T ss_pred CCCceEEEEcCC------CHHHHHHHHHHhhh--hcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCC
Confidence 368999999543 33456788887764 3499999997653 3455667777777888
Q ss_pred EEEEeCCC
Q 021144 271 VIIYPNSG 278 (317)
Q Consensus 271 l~vyPNaG 278 (317)
+.+.---|
T Consensus 144 Vs~KIRI~ 151 (358)
T KOG2335|consen 144 VSVKIRIF 151 (358)
T ss_pred eEEEEEec
Confidence 87776555
No 139
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=78.99 E-value=55 Score=30.42 Aligned_cols=140 Identities=21% Similarity=0.236 Sum_probs=76.4
Q ss_pred ChHHHHHHHHHHHHhhccccccccccccHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCC
Q 021144 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSR 132 (317)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~ 132 (317)
+.+..++.-+.++++|.+-|..+--..-.. -++.+|-.++.+.+++.+. ++
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~GstGE~~-----~Lt~~Er~~l~~~~~~~~~------------------------~~ 70 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLGSTGEFY-----SLTDEERKELLEIVVEAAA------------------------GR 70 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESSTTTTGG-----GS-HHHHHHHHHHHHHHHT------------------------TS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcccc-----cCCHHHHHHHHHHHHHHcc------------------------Cc
Confidence 456788888888999999666543322222 2455666677666554431 22
Q ss_pred CeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecc----CCCHHHHHHHHHHHHHhCC
Q 021144 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFET----IPNKLEAKAYAELLEEEGI 208 (317)
Q Consensus 133 ~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET----~p~~~Ea~a~~~~~~~~~~ 208 (317)
-.+|+| +|.. +.++..+ +++...+.|+|.+++-. -++-+++..-.+.+.+..
T Consensus 71 ~~vi~g-v~~~------------------st~~~i~----~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~- 126 (289)
T PF00701_consen 71 VPVIAG-VGAN------------------STEEAIE----LARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADAT- 126 (289)
T ss_dssp SEEEEE-EESS------------------SHHHHHH----HHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHS-
T ss_pred eEEEec-Ccch------------------hHHHHHH----HHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhc-
Confidence 335555 5542 4455554 45567779999987642 246777666665555543
Q ss_pred CccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCC
Q 021144 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT 251 (317)
Q Consensus 209 ~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~ 251 (317)
++|+++--. ...+...-+++...+.++ .++ .+|+--+
T Consensus 127 ~~pi~iYn~---P~~tg~~ls~~~l~~L~~-~~n--v~giK~s 163 (289)
T PF00701_consen 127 DLPIIIYNN---PARTGNDLSPETLARLAK-IPN--VVGIKDS 163 (289)
T ss_dssp SSEEEEEEB---HHHHSSTSHHHHHHHHHT-STT--EEEEEES
T ss_pred CCCEEEEEC---CCccccCCCHHHHHHHhc-CCc--EEEEEcC
Confidence 699996331 112222334444444444 445 4555543
No 140
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=78.95 E-value=26 Score=34.06 Aligned_cols=97 Identities=15% Similarity=0.206 Sum_probs=59.1
Q ss_pred HHHHHhCCCCEEEeccCCC---------------HHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhh
Q 021144 174 VLILANSGADLIAFETIPN---------------KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET~p~---------------~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~ 238 (317)
++...++|+|.+-+-.-.+ ++.++.+++.+++.+ . .++|++.+..+. +=.-+.+.++.+.
T Consensus 78 i~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g--~--~v~~~~ed~~r~-~~~~l~~~~~~~~ 152 (365)
T TIGR02660 78 IEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRG--L--FVSVGGEDASRA-DPDFLVELAEVAA 152 (365)
T ss_pred HHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCC--C--EEEEeecCCCCC-CHHHHHHHHHHHH
Confidence 5567778999876554332 333445666677655 3 356777765543 2223334444444
Q ss_pred cCCCceEEEEcCC----ChhhhHHHHHHHHhhCCCcEEEEeC
Q 021144 239 SCEQVVAVGINCT----SPRFIHGLILSVRKVTSKPVIIYPN 276 (317)
Q Consensus 239 ~~~~~~aiGvNC~----~p~~~~~~l~~l~~~~~~pl~vyPN 276 (317)
+ .+++.|.+-=| .|..+..+++.+++..+.||.+...
T Consensus 153 ~-~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~v~l~~H~H 193 (365)
T TIGR02660 153 E-AGADRFRFADTVGILDPFSTYELVRALRQAVDLPLEMHAH 193 (365)
T ss_pred H-cCcCEEEEcccCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 3 46665544322 4899999999998877778776654
No 141
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=78.86 E-value=11 Score=35.58 Aligned_cols=62 Identities=15% Similarity=0.135 Sum_probs=40.1
Q ss_pred CccEEEEEEEcCCCcccCCCcHHHHHHHhhcCC--CceEEEEcCCC------------hhhhHHHHHHHHhhCCCcEEEE
Q 021144 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCE--QVVAVGINCTS------------PRFIHGLILSVRKVTSKPVIIY 274 (317)
Q Consensus 209 ~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~--~~~aiGvNC~~------------p~~~~~~l~~l~~~~~~pl~vy 274 (317)
+.|+++|+... -+.+.++++.+.+.. ++++|=+||+. |+.+.++++.+++..++|++|.
T Consensus 91 ~~pvivsi~g~-------~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vK 163 (294)
T cd04741 91 AKPFFISVTGS-------AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVK 163 (294)
T ss_pred CCeEEEECCCC-------HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 58999998421 122334444444322 57899999974 4457777888888788998876
Q ss_pred eCC
Q 021144 275 PNS 277 (317)
Q Consensus 275 PNa 277 (317)
=--
T Consensus 164 l~p 166 (294)
T cd04741 164 TPP 166 (294)
T ss_pred eCC
Confidence 533
No 142
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=78.83 E-value=54 Score=30.59 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=26.3
Q ss_pred cCCChHHHHHHHHHHHHhhcccccccccc
Q 021144 50 LVSSPHLVRKVHLDYLDAGANIIITASYQ 78 (317)
Q Consensus 50 ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~ 78 (317)
.++++|.+.++-+.--++|+.++....|-
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~k 64 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFK 64 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeec
Confidence 47999999999999999999999999994
No 143
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=78.15 E-value=34 Score=30.67 Aligned_cols=100 Identities=14% Similarity=0.038 Sum_probs=55.3
Q ss_pred HHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcC
Q 021144 171 RRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (317)
Q Consensus 171 ~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC 250 (317)
.+.++..++.|+|++=+|--. .....++..+++. +.++++|+.-.+. +.+=..+.+.+..+.. .+++.+=+-+
T Consensus 79 ~~ll~~~~~~~~d~vDiEl~~--~~~~~~~~~~~~~--~~kiI~S~H~f~~--tp~~~~l~~~~~~~~~-~gadivKla~ 151 (225)
T cd00502 79 LELLEEALKLGPDYVDIELDS--ALLEELINSRKKG--NTKIIGSYHDFSG--TPSDEELVSRLEKMAA-LGADIVKIAV 151 (225)
T ss_pred HHHHHHHHHHCCCEEEEEecc--hHHHHHHHHHHhC--CCEEEEEeccCCC--CcCHHHHHHHHHHHHH-hCCCEEEEEe
Confidence 334455666789999999533 3334444444443 4899999953221 1111223344444443 3455555555
Q ss_pred C--ChhhhHHHHHHHHhhC---CCcEEEEeCC
Q 021144 251 T--SPRFIHGLILSVRKVT---SKPVIIYPNS 277 (317)
Q Consensus 251 ~--~p~~~~~~l~~l~~~~---~~pl~vyPNa 277 (317)
. ++.....+++...+.. +.|++++.-+
T Consensus 152 ~~~~~~D~~~ll~~~~~~~~~~~~p~i~~~MG 183 (225)
T cd00502 152 MANSIEDNLRLLKFTRQVKNLYDIPLIAINMG 183 (225)
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 4 5677777776554442 4688877644
No 144
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=77.94 E-value=67 Score=30.78 Aligned_cols=224 Identities=17% Similarity=0.176 Sum_probs=132.0
Q ss_pred hHHHHHHHHHHHHhhccccccccccccHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCC
Q 021144 54 PHLVRKVHLDYLDAGANIIITASYQATIQGFEAK-GFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSR 132 (317)
Q Consensus 54 Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~~-g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~ 132 (317)
.+.+.+.-++-++.|-.-|.. |+... .++. |-+...-.-++.+|++..|++. .
T Consensus 50 ~d~l~~~~~~~~~~Gi~~v~L--Fgv~~--~Kd~~gs~A~~~~g~v~~air~iK~~~----------------------p 103 (314)
T cd00384 50 VDSLVEEAEELADLGIRAVIL--FGIPE--HKDEIGSEAYDPDGIVQRAIRAIKEAV----------------------P 103 (314)
T ss_pred HHHHHHHHHHHHHCCCCEEEE--ECCCC--CCCCCcccccCCCChHHHHHHHHHHhC----------------------C
Confidence 466666677788889774443 33321 1221 2111111357888888777553 1
Q ss_pred CeEEEEe--eCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCC-C
Q 021144 133 PVLVAAS--VGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGI-T 209 (317)
Q Consensus 133 ~~~Vags--iGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~-~ 209 (317)
+..|..+ +-||-..=++|---.+ .+.-++-.+....|+-..+++|+|+++==-|-+- .+.+|.+++.+.+- +
T Consensus 104 ~l~vi~DvcLc~YT~hGHcGil~~~----~idND~Tl~~L~k~Als~A~AGADiVAPSdMMDG-rV~aIR~aLd~~g~~~ 178 (314)
T cd00384 104 ELVVITDVCLCEYTDHGHCGILKDD----YVDNDATLELLAKIAVSHAEAGADIVAPSDMMDG-RVAAIREALDEAGFSD 178 (314)
T ss_pred CcEEEEeeeccCCCCCCcceeccCC----cCccHHHHHHHHHHHHHHHHcCCCeeeccccccc-HHHHHHHHHHHCCCCC
Confidence 3444443 4566544333322111 2566777788888999999999999986555554 35788888887652 3
Q ss_pred ccEEEEEEEcC-------------------C--CcccCCCcHHHHHHHhh--cCCCceEEEEcCCChhhhHHHHHHHHhh
Q 021144 210 IPAWFSFNSKD-------------------G--INVVSGDSILECASIAD--SCEQVVAVGINCTSPRFIHGLILSVRKV 266 (317)
Q Consensus 210 ~pv~iSf~~~~-------------------~--~~l~~G~~l~~a~~~~~--~~~~~~aiGvNC~~p~~~~~~l~~l~~~ 266 (317)
+|++ |.+.+= + ..-.|=..-.+|+..+. -..|.+.+.|-=.-| -+.+++.+++.
T Consensus 179 v~Im-sYsaKyaSafYGPFRdAa~Sap~~gDRktYQmdpan~~eAlre~~~D~~EGAD~lMVKPal~--YLDIi~~~k~~ 255 (314)
T cd00384 179 VPIM-SYSAKYASAFYGPFRDAADSAPSFGDRKTYQMDPANRREALREVELDIEEGADILMVKPALA--YLDIIRDVRER 255 (314)
T ss_pred Ccee-ecHHHhhhhccchHHHHhhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCch--HHHHHHHHHHh
Confidence 5544 443220 0 01112223334544432 235789888875543 35678888888
Q ss_pred CCCcEEEEeCCCCc---cccccccccccCCCChhhHHHHHHHHHHccccccc
Q 021144 267 TSKPVIIYPNSGET---YNAELKKWVVSFSLHFFPLELILNPFASCRLISFF 315 (317)
Q Consensus 267 ~~~pl~vyPNaG~~---~d~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~~~ 315 (317)
++.|+.+|-=+||- .-...+.|.. ....+.+....+.++|.=-||
T Consensus 256 ~~~PvaaYqVSGEYaMikaAa~~G~id----~~~~~~Esl~~~kRAGAd~Ii 303 (314)
T cd00384 256 FDLPVAAYNVSGEYAMIKAAAKNGWID----EERVVLESLTSIKRAGADLII 303 (314)
T ss_pred cCCCEEEEEccHHHHHHHHHHHcCCcc----HHHHHHHHHHHHHhcCCCEEE
Confidence 89999999999962 3344467752 123466777778888864444
No 145
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=77.90 E-value=44 Score=30.10 Aligned_cols=95 Identities=18% Similarity=0.132 Sum_probs=58.3
Q ss_pred HhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCC--Chhh
Q 021144 178 ANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT--SPRF 255 (317)
Q Consensus 178 ~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~--~p~~ 255 (317)
...++|++=+|--.....++.+++.+++. +..+++|+.-- .++.+-..+.+.+..+.. .+.+.+=+-|. ++..
T Consensus 89 ~~~~~d~vDiEl~~~~~~~~~l~~~~~~~--~~kvI~S~H~f--~~tp~~~~l~~~~~~~~~-~gaDivKia~~a~~~~D 163 (228)
T TIGR01093 89 DSPGPDFVDIELFLPDDAVKELINIAKKG--GTKIIMSYHDF--QKTPSWEEIVERLEKALS-YGADIVKIAVMANSKED 163 (228)
T ss_pred HhCCCCEEEEEccCCHHHHHHHHHHHHHC--CCEEEEeccCC--CCCCCHHHHHHHHHHHHH-hCCCEEEEEeccCCHHH
Confidence 45789999999655555555566655554 48899998522 122222334455555544 46677767664 5667
Q ss_pred hHHHHHHHHh---hCCCcEEEEeCC
Q 021144 256 IHGLILSVRK---VTSKPVIIYPNS 277 (317)
Q Consensus 256 ~~~~l~~l~~---~~~~pl~vyPNa 277 (317)
+..+++...+ ..++|+++|.-+
T Consensus 164 ~~~ll~~~~~~~~~~~~p~i~~~MG 188 (228)
T TIGR01093 164 VLTLLEITNKVDEHADVPLITMSMG 188 (228)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 6677664433 245798888754
No 146
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=77.85 E-value=31 Score=31.06 Aligned_cols=81 Identities=17% Similarity=0.189 Sum_probs=51.3
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEE---c
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI---N 249 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGv---N 249 (317)
|++...++|+++++ -|.+.+ .+++++++.+ +|++- .-.++.++.+... .+++.|++ .
T Consensus 80 ~~~~a~~aGA~Fiv---sP~~~~--~v~~~~~~~~--i~~iP-----------G~~T~~E~~~A~~--~Gad~vklFPa~ 139 (213)
T PRK06552 80 TARLAILAGAQFIV---SPSFNR--ETAKICNLYQ--IPYLP-----------GCMTVTEIVTALE--AGSEIVKLFPGS 139 (213)
T ss_pred HHHHHHHcCCCEEE---CCCCCH--HHHHHHHHcC--CCEEC-----------CcCCHHHHHHHHH--cCCCEEEECCcc
Confidence 56667789999998 355544 5566677755 88771 2246778887765 57899998 4
Q ss_pred CCChhhhHHHHHHHHhhC-CCcEEEEeCCCC
Q 021144 250 CTSPRFIHGLILSVRKVT-SKPVIIYPNSGE 279 (317)
Q Consensus 250 C~~p~~~~~~l~~l~~~~-~~pl~vyPNaG~ 279 (317)
..+|+. ++.++... +.|++ |=+|-
T Consensus 140 ~~G~~~----ik~l~~~~p~ip~~--atGGI 164 (213)
T PRK06552 140 TLGPSF----IKAIKGPLPQVNVM--VTGGV 164 (213)
T ss_pred cCCHHH----HHHHhhhCCCCEEE--EECCC
Confidence 444444 44454443 25543 66664
No 147
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=77.53 E-value=66 Score=30.53 Aligned_cols=83 Identities=16% Similarity=0.144 Sum_probs=46.0
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHH---hhcCCCceEEEEc
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASI---ADSCEQVVAVGIN 249 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~---~~~~~~~~aiGvN 249 (317)
.++.+.+.|+|.+-++.-.++.|++..+ +.+ +.+.-.++....+..|+ .+++.+. +-+ .+...+...
T Consensus 245 ~l~~~~~~g~d~~~~d~~~dl~~~~~~~------g~~--~~i~Gnidp~~~l~~gt-~eeI~~~v~~~l~-~g~~Il~~g 314 (339)
T PRK06252 245 ILEEMADCGFDGISIDEKVDVKTAKENV------GDR--AALIGNVSTSFTLLNGT-PEKVKAEAKKCLE-DGVDILAPG 314 (339)
T ss_pred HHHHHHhcCCCeeccCCCCCHHHHHHHh------CCC--eEEEeccCcHHHhcCCC-HHHHHHHHHHHHH-cCCCEEcCC
Confidence 3556777899999988888887765332 212 33334444323455554 3433333 322 234567777
Q ss_pred CC-C----hhhhHHHHHHHHh
Q 021144 250 CT-S----PRFIHGLILSVRK 265 (317)
Q Consensus 250 C~-~----p~~~~~~l~~l~~ 265 (317)
|. . ++.+..+++..+.
T Consensus 315 cgi~~~tp~enl~a~v~a~~~ 335 (339)
T PRK06252 315 CGIAPKTPLENIKAMVEARKE 335 (339)
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 85 2 3666666665544
No 148
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=77.45 E-value=37 Score=34.76 Aligned_cols=99 Identities=10% Similarity=0.116 Sum_probs=66.8
Q ss_pred HHHHHhCCCCEE-EeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCC-
Q 021144 174 VLILANSGADLI-AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT- 251 (317)
Q Consensus 174 i~~l~~~gvD~l-~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~- 251 (317)
++...+.|+|+| +|-.+.++.-++.+++++++.+...-..|+++..... +-+-+.+.++.+.+ .+++.|.|-=+
T Consensus 103 v~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~---t~e~~~~~a~~l~~-~Gad~I~IkDta 178 (499)
T PRK12330 103 VEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIH---TVEGFVEQAKRLLD-MGADSICIKDMA 178 (499)
T ss_pred HHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCC---CHHHHHHHHHHHHH-cCCCEEEeCCCc
Confidence 445667899998 6677888999999999999987333345555553311 22233344544544 57777766543
Q ss_pred ---ChhhhHHHHHHHHhhC--CCcEEEEeC
Q 021144 252 ---SPRFIHGLILSVRKVT--SKPVIIYPN 276 (317)
Q Consensus 252 ---~p~~~~~~l~~l~~~~--~~pl~vyPN 276 (317)
.|..+..+++.+++.. +.||.+.-.
T Consensus 179 Gll~P~~~~~LV~~Lk~~~~~~ipI~~H~H 208 (499)
T PRK12330 179 ALLKPQPAYDIVKGIKEACGEDTRINLHCH 208 (499)
T ss_pred cCCCHHHHHHHHHHHHHhCCCCCeEEEEeC
Confidence 3899999999999877 678876653
No 149
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=77.44 E-value=65 Score=30.38 Aligned_cols=112 Identities=21% Similarity=0.234 Sum_probs=66.6
Q ss_pred CCCCHHH---HHHHHHHHHHHHHhCCCCEEEeccC----------C---------------CHHHHHHHHHHHHHh-CCC
Q 021144 159 DAVSLET---LKEFHRRRVLILANSGADLIAFETI----------P---------------NKLEAKAYAELLEEE-GIT 209 (317)
Q Consensus 159 ~~~s~~e---l~~~h~~qi~~l~~~gvD~l~~ET~----------p---------------~~~Ea~a~~~~~~~~-~~~ 209 (317)
+.++.+| +.+.|.+.++...++|.|.|=+-.- | ..+.+..+++++++. +.+
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d 208 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPD 208 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 3467666 4556777777778899998854321 1 022244566666664 345
Q ss_pred ccEEEEEEEcCCCcccCCCcHHHHHHHh---hcCCCceEEEEcCCC---h-----------hhhHHHHHHHHhhCCCcEE
Q 021144 210 IPAWFSFNSKDGINVVSGDSILECASIA---DSCEQVVAVGINCTS---P-----------RFIHGLILSVRKVTSKPVI 272 (317)
Q Consensus 210 ~pv~iSf~~~~~~~l~~G~~l~~a~~~~---~~~~~~~aiGvNC~~---p-----------~~~~~~l~~l~~~~~~pl~ 272 (317)
.|+.+-++..+ ...+|.++++++..+ .+ .+++.|-+.... + ..-...++.+++..+.||+
T Consensus 209 ~~i~vris~~~--~~~~g~~~~e~~~la~~l~~-~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi 285 (327)
T cd02803 209 FPVGVRLSADD--FVPGGLTLEEAIEIAKALEE-AGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVI 285 (327)
T ss_pred ceEEEEechhc--cCCCCCCHHHHHHHHHHHHH-cCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEE
Confidence 67877776532 233566777665444 33 467887665532 1 2233567778887788876
Q ss_pred E
Q 021144 273 I 273 (317)
Q Consensus 273 v 273 (317)
+
T Consensus 286 ~ 286 (327)
T cd02803 286 A 286 (327)
T ss_pred E
Confidence 5
No 150
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=77.41 E-value=41 Score=31.26 Aligned_cols=89 Identities=18% Similarity=0.172 Sum_probs=53.2
Q ss_pred HHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCce-EEEEcC-C
Q 021144 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVV-AVGINC-T 251 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~-aiGvNC-~ 251 (317)
++.+.++|||.+++=-+| ++|+...++.+++.+ +..+ .|.. + -++.+.+-.....+.+.. .++.+= |
T Consensus 110 ~~~~~~aGvdGviipDLp-~ee~~~~~~~~~~~g--l~~I-~lva-p------~t~~eri~~i~~~s~gfIY~vs~~GvT 178 (258)
T PRK13111 110 AADAAEAGVDGLIIPDLP-PEEAEELRAAAKKHG--LDLI-FLVA-P------TTTDERLKKIASHASGFVYYVSRAGVT 178 (258)
T ss_pred HHHHHHcCCcEEEECCCC-HHHHHHHHHHHHHcC--CcEE-EEeC-C------CCCHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 455777999999998887 589999999999876 3333 2211 1 112222222222223322 234444 2
Q ss_pred C-----hhhhHHHHHHHHhhCCCcEEE
Q 021144 252 S-----PRFIHGLILSVRKVTSKPVII 273 (317)
Q Consensus 252 ~-----p~~~~~~l~~l~~~~~~pl~v 273 (317)
+ +..+...++.+++.++.|+++
T Consensus 179 G~~~~~~~~~~~~i~~vk~~~~~pv~v 205 (258)
T PRK13111 179 GARSADAADLAELVARLKAHTDLPVAV 205 (258)
T ss_pred CcccCCCccHHHHHHHHHhcCCCcEEE
Confidence 2 456777888888888888776
No 151
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=77.17 E-value=71 Score=32.39 Aligned_cols=65 Identities=17% Similarity=0.196 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhCCCCEEEeccCC---CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhh
Q 021144 167 KEFHRRRVLILANSGADLIAFETIP---NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (317)
Q Consensus 167 ~~~h~~qi~~l~~~gvD~l~~ET~p---~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~ 238 (317)
.++|.+.++.+.+.|+|.|.+=-+. ...++..++.++++.- ++| +.|-+.++ .|..+..++..++
T Consensus 152 ~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~-~vp--I~~H~Hnt----~GlA~AN~laAie 219 (467)
T PRK14041 152 LEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKF-GVP--VEVHSHCT----TGLASLAYLAAVE 219 (467)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhc-CCc--eEEEecCC----CCcHHHHHHHHHH
Confidence 3567778888999999999776332 5778888888888753 355 45555443 4666666666654
No 152
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=76.85 E-value=56 Score=33.33 Aligned_cols=64 Identities=11% Similarity=0.076 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCCCEEEeccC-CCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEE
Q 021144 171 RRRVLILANSGADLIAFETI-PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAV 246 (317)
Q Consensus 171 ~~qi~~l~~~gvD~l~~ET~-p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~ai 246 (317)
.++++.|+++|+|+|.+-+- .+-..+...++.+++..+++|+++ | +..+.+++...++ .++++|
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~a-------G---~V~t~~~a~~~~~--aGad~I 307 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIA-------G---NVVTADQAKNLID--AGADGL 307 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEE-------C---CcCCHHHHHHHHH--cCCCEE
Confidence 56899999999999998652 122223445666666544677775 2 3445666666665 366665
No 153
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=76.61 E-value=50 Score=28.64 Aligned_cols=89 Identities=12% Similarity=0.041 Sum_probs=53.6
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEE-EEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCC
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFS-FNSKDGINVVSGDSILECASIADSCEQVVAVGINCT 251 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iS-f~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~ 251 (317)
.++.+.++|+|++.+=..+...++..+++.+++.+ +++.+. +++ . +..++.+.+. .+++.++++=+
T Consensus 69 ~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g--~~~~v~~~~~--------~-t~~e~~~~~~--~~~d~v~~~~~ 135 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYG--KEVQVDLIGV--------E-DPEKRAKLLK--LGVDIVILHRG 135 (202)
T ss_pred HHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcC--CeEEEEEeCC--------C-CHHHHHHHHH--CCCCEEEEcCc
Confidence 35677889999999866666566778888888865 777765 322 2 3445555333 36677777421
Q ss_pred ------ChhhhHHHHHHHHhhCCCcEEEE
Q 021144 252 ------SPRFIHGLILSVRKVTSKPVIIY 274 (317)
Q Consensus 252 ------~p~~~~~~l~~l~~~~~~pl~vy 274 (317)
+.....+.++.+++..+.|+++-
T Consensus 136 ~~~~~~~~~~~~~~i~~~~~~~~~~i~~~ 164 (202)
T cd04726 136 IDAQAAGGWWPEDDLKKVKKLLGVKVAVA 164 (202)
T ss_pred ccccccCCCCCHHHHHHHHhhcCCCEEEE
Confidence 11233455666655445555433
No 154
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=76.61 E-value=40 Score=32.96 Aligned_cols=65 Identities=22% Similarity=0.167 Sum_probs=36.7
Q ss_pred CCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEE-EeccC-----CCHHH-HHHHHHHHH
Q 021144 132 RPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLI-AFETI-----PNKLE-AKAYAELLE 204 (317)
Q Consensus 132 ~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l-~~ET~-----p~~~E-a~a~~~~~~ 204 (317)
.++++..-|=|.| ++.+++ .+.+..++.+|||+| --|.+ ...+| ++++.++++
T Consensus 125 ~rPl~~tiiKP~G----------------L~~~~~----a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~ 184 (364)
T cd08210 125 ERPLLCSALKPQG----------------LSAAEL----AELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVA 184 (364)
T ss_pred CCceEEEEecccc----------------CCHHHH----HHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHH
Confidence 3567777777754 355554 446667777999999 22322 22333 444445544
Q ss_pred H----hCCCccEEEEE
Q 021144 205 E----EGITIPAWFSF 216 (317)
Q Consensus 205 ~----~~~~~pv~iSf 216 (317)
+ ++..+++.+.+
T Consensus 185 ~a~~eTG~~~~y~~Ni 200 (364)
T cd08210 185 EANAETGGRTLYAPNV 200 (364)
T ss_pred HHHhhcCCcceEEEec
Confidence 3 44345565555
No 155
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=76.40 E-value=5.5 Score=36.71 Aligned_cols=39 Identities=28% Similarity=0.409 Sum_probs=30.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCC
Q 021144 149 DGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPN 192 (317)
Q Consensus 149 ~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~ 192 (317)
|||.|.+. +.+++.+.-..-+..|.++|+|.+++|.+.+
T Consensus 20 PGsp~~~~-----~~~~vid~A~~dA~~leegG~DavivEN~gD 58 (263)
T COG0434 20 PGSPYDAG-----SLEAVIDRAVRDAAALEEGGVDAVIVENYGD 58 (263)
T ss_pred CCCccccC-----CHHHHHHHHHHHHHHHHhCCCcEEEEeccCC
Confidence 45554432 7888888777778999999999999998765
No 156
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=76.18 E-value=67 Score=29.92 Aligned_cols=89 Identities=18% Similarity=0.228 Sum_probs=51.5
Q ss_pred HHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceE-EEEcC-C
Q 021144 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVA-VGINC-T 251 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~a-iGvNC-~ 251 (317)
++.+.++|||.+++=-+| .+|.....+++++.+ +..+ .|.- ..++-+..-..+..+.+... +..+= |
T Consensus 108 ~~~~~~aGvdGlIipDLP-~ee~~~~~~~~~~~g--l~~I-~lv~-------p~t~~~Ri~~i~~~a~gFiY~vs~~GvT 176 (259)
T PF00290_consen 108 FKEAKEAGVDGLIIPDLP-PEESEELREAAKKHG--LDLI-PLVA-------PTTPEERIKKIAKQASGFIYLVSRMGVT 176 (259)
T ss_dssp HHHHHHHTEEEEEETTSB-GGGHHHHHHHHHHTT---EEE-EEEE-------TTS-HHHHHHHHHH-SSEEEEESSSSSS
T ss_pred HHHHHHcCCCEEEEcCCC-hHHHHHHHHHHHHcC--CeEE-EEEC-------CCCCHHHHHHHHHhCCcEEEeeccCCCC
Confidence 455677899999998888 578788888888766 4433 3321 22333333333333334332 22233 2
Q ss_pred C-----hhhhHHHHHHHHhhCCCcEEE
Q 021144 252 S-----PRFIHGLILSVRKVTSKPVII 273 (317)
Q Consensus 252 ~-----p~~~~~~l~~l~~~~~~pl~v 273 (317)
+ +..+...++.+++.++.|+.+
T Consensus 177 G~~~~~~~~l~~~i~~ik~~~~~Pv~v 203 (259)
T PF00290_consen 177 GSRTELPDELKEFIKRIKKHTDLPVAV 203 (259)
T ss_dssp STTSSCHHHHHHHHHHHHHTTSS-EEE
T ss_pred CCcccchHHHHHHHHHHHhhcCcceEE
Confidence 2 456788888888888888654
No 157
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=76.10 E-value=14 Score=34.97 Aligned_cols=65 Identities=11% Similarity=0.113 Sum_probs=44.0
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcC
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC 250 (317)
|+...+++|+|+|.+..|+ .++++.+++.+++..+ .+.+.. .-|-+++.+.++.. .+++.|-+-.
T Consensus 201 qa~ea~~agaDiI~LDn~~-~e~l~~av~~~~~~~~--~~~lea--------SGGI~~~ni~~yA~--tGvD~Is~ga 265 (284)
T PRK06096 201 EAIAALRAQPDVLQLDKFS-PQQATEIAQIAPSLAP--HCTLSL--------AGGINLNTLKNYAD--CGIRLFITSA 265 (284)
T ss_pred HHHHHHHcCCCEEEECCCC-HHHHHHHHHHhhccCC--CeEEEE--------ECCCCHHHHHHHHh--cCCCEEEECc
Confidence 4555667999999999886 7888888887765332 233333 24778887777665 4777774433
No 158
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=76.07 E-value=77 Score=30.56 Aligned_cols=112 Identities=14% Similarity=0.098 Sum_probs=66.8
Q ss_pred CCCHHH---HHHHHHHHHHHHHhCCCCEEEecc------------CCC-------------HHHHHHHHHHHHHh-CCCc
Q 021144 160 AVSLET---LKEFHRRRVLILANSGADLIAFET------------IPN-------------KLEAKAYAELLEEE-GITI 210 (317)
Q Consensus 160 ~~s~~e---l~~~h~~qi~~l~~~gvD~l~~ET------------~p~-------------~~Ea~a~~~~~~~~-~~~~ 210 (317)
.++.+| +.+.|...++...++|.|.+=+=. ..+ ..-+..+++++++. +.+.
T Consensus 126 ~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~ 205 (353)
T cd02930 126 ELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDF 205 (353)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCc
Confidence 467666 455677777777789999995533 112 45566777778775 3344
Q ss_pred cEEEEEEEcCCCcccCCCcHHHHHHHhhc--CCCceEEEEcCC---Ch----------hhhHHHHHHHHhhCCCcEEE
Q 021144 211 PAWFSFNSKDGINVVSGDSILECASIADS--CEQVVAVGINCT---SP----------RFIHGLILSVRKVTSKPVII 273 (317)
Q Consensus 211 pv~iSf~~~~~~~l~~G~~l~~a~~~~~~--~~~~~aiGvNC~---~p----------~~~~~~l~~l~~~~~~pl~v 273 (317)
|+.+-++..+ ....|.+++++++.+.. ..+++.|-|-+. .+ .....+.+.+++.++.|+++
T Consensus 206 ~v~iRi~~~D--~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~ 281 (353)
T cd02930 206 IIIYRLSMLD--LVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIA 281 (353)
T ss_pred eEEEEecccc--cCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEE
Confidence 5555554433 23356777776655431 246777766432 11 01244567788888889766
No 159
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=76.03 E-value=41 Score=30.90 Aligned_cols=98 Identities=14% Similarity=0.002 Sum_probs=59.0
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEc-CCC--c------ccCCCcHHHHHHHhhcCCCc
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSK-DGI--N------VVSGDSILECASIADSCEQV 243 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~-~~~--~------l~~G~~l~~a~~~~~~~~~~ 243 (317)
+++.+.+.|+|-+++-|..- ..-..+.+++++.+ + .+++|+-++ ++. . ..++.++.+.++.+.+ .++
T Consensus 88 ~~~~~l~~Ga~~vvigT~a~-~~p~~~~~~~~~~g-~-~ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~-~g~ 163 (243)
T TIGR01919 88 SLRAALTGGRARVNGGTAAL-ENPWWAAAVIRYGG-D-IVAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDS-GGC 163 (243)
T ss_pred HHHHHHHcCCCEEEECchhh-CCHHHHHHHHHHcc-c-cEEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHh-CCC
Confidence 45556668999999887431 12223334445554 3 388898886 331 2 2367788888888875 465
Q ss_pred eEEEEcCCChh-----hhHHHHHHHHhhCCCcEEEE
Q 021144 244 VAVGINCTSPR-----FIHGLILSVRKVTSKPVIIY 274 (317)
Q Consensus 244 ~aiGvNC~~p~-----~~~~~l~~l~~~~~~pl~vy 274 (317)
..|-++..+-+ .=..+++++++.++.|+++-
T Consensus 164 ~~ii~tdI~~dGt~~G~d~~l~~~l~~~~~~pvias 199 (243)
T TIGR01919 164 SRVVVTDSKKDGLSGGPNELLLEVVAARTDAIVAAS 199 (243)
T ss_pred CEEEEEecCCcccCCCcCHHHHHHHHhhCCCCEEEE
Confidence 56666653211 11357777877777886543
No 160
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=76.01 E-value=41 Score=32.65 Aligned_cols=168 Identities=18% Similarity=0.275 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHhhccccccccccccHHHHHhC-----C--C--CH----HHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 021144 56 LVRKVHLDYLDAGANIIITASYQATIQGFEAK-----G--F--ST----EEAEALLRRSVEIACEAREIYYDRCMKDSWD 122 (317)
Q Consensus 56 ~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~~-----g--~--~~----~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~ 122 (317)
.++++...=++||.|+++-.-|+ ..+... | . ++ ++...+.+ .+.-.+++.+|.++++
T Consensus 39 ~~~~~~~~q~dAGld~~Tdgqlr---Dm~~~fl~~i~~~~~~~~p~~~~~~~a~i~e--l~~~~~~~~~~~~~~~----- 108 (344)
T PRK06052 39 VVRSAFQMKIDAGVQVPTYPQFR---DMIEQFLDIIRDEKCCEEPYVVKEECAKILE--LEAIEEVAKEYKEETG----- 108 (344)
T ss_pred HHHHHHHHHHhcCCccccchHHH---HHHHhHHHHHcCCcccCCCeeeehhhhhHHH--HHHHHHHHHHHHHhhC-----
Confidence 67778888889999999988888 332211 1 1 00 11112221 2233455566655432
Q ss_pred CCCCCCCCCCCeEEEEee-CCCcCccCCCCCCCC-CCCC--CCCHHHHHHHHHHHHHHHHhCCCCEEEe-----ccCC--
Q 021144 123 FTGSGRISSRPVLVAASV-GSYGAYLADGSEYSG-DYGD--AVSLETLKEFHRRRVLILANSGADLIAF-----ETIP-- 191 (317)
Q Consensus 123 ~~~~~~~~~~~~~Vagsi-GP~g~~l~~gseY~g-~y~~--~~s~~el~~~h~~qi~~l~~~gvD~l~~-----ET~p-- 191 (317)
.+..|=++| ||+--+.. .|.+ .|.+ ..-..++..+-++.++.+.+.||++|-+ =|-|
T Consensus 109 ---------~~~~VKv~iTGP~tL~~~---~f~~~~Y~d~~~~la~~ia~~l~~e~~~l~~~gv~~IqIDEP~l~~~~~~ 176 (344)
T PRK06052 109 ---------ETLEVRVCVTGPTELYLQ---EFGGTIYTDILLILAKSVERFVENAIKSAKNFKIKTISIDEPSLGINPEI 176 (344)
T ss_pred ---------CCCCeEEEecCHHHHHHH---HcCCccccchHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCcccccCCcc
Confidence 233344444 78643221 2222 3433 1123456778888899999999999843 3443
Q ss_pred --CHHHHHHHHHHHHH----hCCCccEEEEEEEcCCCcccCCCcHHHHH-HHhhcCCCceEEEEcCC-ChhhhHHHHH
Q 021144 192 --NKLEAKAYAELLEE----EGITIPAWFSFNSKDGINVVSGDSILECA-SIADSCEQVVAVGINCT-SPRFIHGLIL 261 (317)
Q Consensus 192 --~~~Ea~a~~~~~~~----~~~~~pv~iSf~~~~~~~l~~G~~l~~a~-~~~~~~~~~~aiGvNC~-~p~~~~~~l~ 261 (317)
+.+++..+++.+.. .+.+.++.+.. .+. ..+.+..+++.+|+-|+ .|+.+ .+++
T Consensus 177 ~~~~~~~i~Al~~a~~~a~~~gvdv~i~lH~---------------~l~~~~i~~~~~idvi~~E~A~~~~~L-~~l~ 238 (344)
T PRK06052 177 QFSDDEIISALTVASTYARKQGADVEIHLHS---------------PLYYELICETPGINVIGVESAATPSYL-DLID 238 (344)
T ss_pred ccCHHHHHHHHHHHHhhhccCCcceEEEEeh---------------HhhHHHHhcCCCCCEEeeeccCChHHH-HHHh
Confidence 55666666655411 12233443322 233 34444445999999998 56444 3443
No 161
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=75.91 E-value=62 Score=32.49 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=18.3
Q ss_pred ChHHHHHHHHHHHHhhcccccccccccc
Q 021144 53 SPHLVRKVHLDYLDAGANIIITASYQAT 80 (317)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~TnTy~as 80 (317)
+++..+++- .-++||+|+|...+-+.+
T Consensus 222 ~~~~~~r~~-~L~~aG~d~I~vd~a~g~ 248 (450)
T TIGR01302 222 REFDKERAE-ALVKAGVDVIVIDSSHGH 248 (450)
T ss_pred chhHHHHHH-HHHHhCCCEEEEECCCCc
Confidence 344444443 678899999998776644
No 162
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=75.83 E-value=78 Score=30.47 Aligned_cols=224 Identities=19% Similarity=0.195 Sum_probs=131.6
Q ss_pred hHHHHHHHHHHHHhhccccccccccccHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCC
Q 021144 54 PHLVRKVHLDYLDAGANIIITASYQATIQGFEAK-GFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSR 132 (317)
Q Consensus 54 Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~~-g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~ 132 (317)
.+.+.+.-++-++.|-.-|.. |+.. ..++. |-+...-.-++.++++..+++. .
T Consensus 58 ~d~l~~~v~~~~~~Gi~av~L--Fgv~--~~Kd~~gs~A~~~~g~v~rair~iK~~~----------------------p 111 (323)
T PRK09283 58 IDLLVKEAEEAVELGIPAVAL--FGVP--ELKDEDGSEAYNPDGLVQRAIRAIKKAF----------------------P 111 (323)
T ss_pred HHHHHHHHHHHHHCCCCEEEE--eCcC--CCCCcccccccCCCCHHHHHHHHHHHhC----------------------C
Confidence 355666777888999875554 3331 11111 2111111347788888777542 1
Q ss_pred CeEEEEe--eCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCC-C
Q 021144 133 PVLVAAS--VGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGI-T 209 (317)
Q Consensus 133 ~~~Vags--iGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~-~ 209 (317)
+.+|..+ +-||-..=++|---.| .+.-++-.+...+|+-.++++|+|+++==-|-+- .+.+|.+++.+.+- +
T Consensus 112 ~l~vi~DVcLc~YT~hGHcGil~~g----~idND~Tl~~L~~~Al~~A~AGaDiVAPSdMMDG-rV~aIR~aLd~~g~~~ 186 (323)
T PRK09283 112 ELGVITDVCLDEYTSHGHCGILEDG----YVDNDETLELLAKQALSQAEAGADIVAPSDMMDG-RVGAIREALDEAGFTD 186 (323)
T ss_pred CcEEEEeeeccCCCCCCceecccCC----cCcCHHHHHHHHHHHHHHHHhCCCEEEccccccc-HHHHHHHHHHHCCCCC
Confidence 3455554 4555544333321111 2566777788888999999999999996655554 35778888887652 4
Q ss_pred ccEEEEEEEcC-------------------C--CcccCCCcHHHHHHHhh--cCCCceEEEEcCCChhhhHHHHHHHHhh
Q 021144 210 IPAWFSFNSKD-------------------G--INVVSGDSILECASIAD--SCEQVVAVGINCTSPRFIHGLILSVRKV 266 (317)
Q Consensus 210 ~pv~iSf~~~~-------------------~--~~l~~G~~l~~a~~~~~--~~~~~~aiGvNC~~p~~~~~~l~~l~~~ 266 (317)
+|++ |.+.+= + ..-.|=..-.+|+..+. -..|++.+.|-=.-| -+.+++.+++.
T Consensus 187 v~Im-SYsaKyaS~fYGPFRdA~~Sap~~gDrktYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~--YLDIi~~~k~~ 263 (323)
T PRK09283 187 VPIM-SYSAKYASAFYGPFRDAAGSAPQFGDRKTYQMDPANRREALREVALDIEEGADMVMVKPALP--YLDIIRRVKDE 263 (323)
T ss_pred Ccee-ecHHHHHHhhhHHHHHHHhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCch--HHHHHHHHHhc
Confidence 4544 443220 0 11122223334444432 224789888875543 35678888888
Q ss_pred CCCcEEEEeCCCCc---cccccccccccCCCChhhHHHHHHHHHHccccccc
Q 021144 267 TSKPVIIYPNSGET---YNAELKKWVVSFSLHFFPLELILNPFASCRLISFF 315 (317)
Q Consensus 267 ~~~pl~vyPNaG~~---~d~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~~~ 315 (317)
++.|+.+|-=+||- .-...+.|.+ ....+.+....+.++|.=-||
T Consensus 264 ~~~PvaaYqVSGEYaMikaAa~~G~~D----~~~~~~Esl~~~kRAGAd~Ii 311 (323)
T PRK09283 264 FNLPVAAYQVSGEYAMIKAAAQNGWID----EERVVLESLLSIKRAGADGIL 311 (323)
T ss_pred CCCCEEEEEccHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhcCCCEEE
Confidence 89999999999962 3333456752 123466777777787765444
No 163
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=75.77 E-value=71 Score=30.26 Aligned_cols=83 Identities=22% Similarity=0.193 Sum_probs=40.7
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCc--HHHHHHH-hhc---CCCceEE
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDS--ILECASI-ADS---CEQVVAV 246 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~--l~~a~~~-~~~---~~~~~ai 246 (317)
.++.+.+.|+|+|-++.-.++.|++. +.+.+..++ -.++....|. |+. +.+.++. ++. ..+-..+
T Consensus 248 ~~~~l~~~g~d~~~~~~~~~~~~~~~------~~~~~~~l~--Gni~~~~~l~-gt~eei~~~v~~~i~~~~~~~~gfIl 318 (343)
T PF01208_consen 248 ILDDLADLGADVLSVDEKVDLAEAKR------KLGDKIVLM--GNIDPVSLLF-GTPEEIEEEVKRLIEEGLAGGGGFIL 318 (343)
T ss_dssp GHHHHHTSS-SEEEE-TTS-HHHHHH------HHTTSSEEE--EEB-G-GGGG-S-HHHHHHHHHHHHHHTHCTSSSEEB
T ss_pred HHHHHHhcCCCEEEEcCCCCHHHHHH------HhCCCeEEE--CCCCcccccc-CCHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 46667789999999987777755443 444233333 3344334454 532 2233322 221 2344577
Q ss_pred EEcCC-C----hhhhHHHHHHHH
Q 021144 247 GINCT-S----PRFIHGLILSVR 264 (317)
Q Consensus 247 GvNC~-~----p~~~~~~l~~l~ 264 (317)
+..|. . ++.+..+++..+
T Consensus 319 ~~gc~ip~~~p~eni~a~~~a~~ 341 (343)
T PF01208_consen 319 SPGCGIPPDTPPENIKAMVEAVK 341 (343)
T ss_dssp EBSS---TTS-HHHHHHHHHHHH
T ss_pred eCCCcCCCCcCHHHHHHHHHHHH
Confidence 88884 2 355666665544
No 164
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=75.71 E-value=36 Score=30.68 Aligned_cols=100 Identities=21% Similarity=0.240 Sum_probs=54.1
Q ss_pred HHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCccc------CCCcHHHHHHHhhcCCCceE--
Q 021144 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVV------SGDSILECASIADSCEQVVA-- 245 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~------~G~~l~~a~~~~~~~~~~~a-- 245 (317)
++.+.+.|+|.+.+-|.. +.+...+.++.+..+ ...+++|+.+.++.-.. .+.++.+.++.+.. .++..
T Consensus 91 ~~~~~~~Ga~~v~iGs~~-~~~~~~~~~i~~~~g-~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~-~G~~~i~ 167 (241)
T PRK13585 91 AASLLDLGVDRVILGTAA-VENPEIVRELSEEFG-SERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEE-LGAGSIL 167 (241)
T ss_pred HHHHHHcCCCEEEEChHH-hhChHHHHHHHHHhC-CCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHH-cCCCEEE
Confidence 445556899998887643 222233444455544 35678888875432111 23366677766654 34333
Q ss_pred -EEEcCCC--hhhhHHHHHHHHhhCCCcEEEEeCCC
Q 021144 246 -VGINCTS--PRFIHGLILSVRKVTSKPVIIYPNSG 278 (317)
Q Consensus 246 -iGvNC~~--p~~~~~~l~~l~~~~~~pl~vyPNaG 278 (317)
.++...+ ...-..+++++.+..+.|++ .++|
T Consensus 168 ~~~~~~~g~~~g~~~~~i~~i~~~~~iPvi--a~GG 201 (241)
T PRK13585 168 FTNVDVEGLLEGVNTEPVKELVDSVDIPVI--ASGG 201 (241)
T ss_pred EEeecCCCCcCCCCHHHHHHHHHhCCCCEE--EeCC
Confidence 3343211 11123567777777778854 4555
No 165
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=75.17 E-value=9 Score=34.74 Aligned_cols=98 Identities=20% Similarity=0.176 Sum_probs=60.5
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCC-C------cccCCCcHHHHHHHhhcCCCceE
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDG-I------NVVSGDSILECASIADSCEQVVA 245 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~-~------~l~~G~~l~~a~~~~~~~~~~~a 245 (317)
.++.+.+.|+|-+++-|.. +.....+-+++++.+ +-.+++|+.++++ . .-..+.++.+.++.+.+ .++..
T Consensus 87 d~~~ll~~Ga~~Vvigt~~-~~~~~~l~~~~~~~g-~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~-~g~~~ 163 (229)
T PF00977_consen 87 DAERLLDAGADRVVIGTEA-LEDPELLEELAERYG-SQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEE-LGAGE 163 (229)
T ss_dssp HHHHHHHTT-SEEEESHHH-HHCCHHHHHHHHHHG-GGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHH-TT-SE
T ss_pred HHHHHHHhCCCEEEeChHH-hhchhHHHHHHHHcC-cccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHh-cCCcE
Confidence 3556777999988887642 222233444555555 3579999998775 1 12234578899988876 46777
Q ss_pred EEEcCCChh-----hhHHHHHHHHhhCCCcEEE
Q 021144 246 VGINCTSPR-----FIHGLILSVRKVTSKPVII 273 (317)
Q Consensus 246 iGvNC~~p~-----~~~~~l~~l~~~~~~pl~v 273 (317)
|-+++..-+ .-..+++.+++..+.|+++
T Consensus 164 ii~tdi~~dGt~~G~d~~~~~~l~~~~~~~via 196 (229)
T PF00977_consen 164 IILTDIDRDGTMQGPDLELLKQLAEAVNIPVIA 196 (229)
T ss_dssp EEEEETTTTTTSSS--HHHHHHHHHHHSSEEEE
T ss_pred EEEeeccccCCcCCCCHHHHHHHHHHcCCCEEE
Confidence 777774211 1236788888777888754
No 166
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=75.12 E-value=14 Score=36.57 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=39.7
Q ss_pred CccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCChh----------------hhHHHHHHHHhhCCCcEE
Q 021144 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPR----------------FIHGLILSVRKVTSKPVI 272 (317)
Q Consensus 209 ~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~p~----------------~~~~~l~~l~~~~~~pl~ 272 (317)
+.|+++|+.... +-+.+.+++..+.+ .++++|=+|++.|. .+..+++.+++.+++||+
T Consensus 99 ~~p~i~si~g~~-----~~~~~~~~a~~~~~-~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~ 172 (420)
T PRK08318 99 DRALIASIMVEC-----NEEEWKEIAPLVEE-TGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVI 172 (420)
T ss_pred CceEEEEeccCC-----CHHHHHHHHHHHHh-cCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEE
Confidence 478888884210 12335566666654 46889999987653 455667777777788987
Q ss_pred EEe
Q 021144 273 IYP 275 (317)
Q Consensus 273 vyP 275 (317)
|.=
T Consensus 173 vKl 175 (420)
T PRK08318 173 VKL 175 (420)
T ss_pred EEc
Confidence 764
No 167
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=75.06 E-value=25 Score=32.81 Aligned_cols=36 Identities=17% Similarity=0.346 Sum_probs=30.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCC
Q 021144 155 GDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPN 192 (317)
Q Consensus 155 g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~ 192 (317)
+.|+ .+.+++.+.=..=++.|.++|+|.+++|.+.+
T Consensus 17 P~~~--~~~~~i~e~A~~ea~~l~~~GvD~viveN~~d 52 (257)
T TIGR00259 17 PSFD--DNLNAVIDKAWKDAMALEEGGVDAVMFENFFD 52 (257)
T ss_pred CCCC--CCHHHHHHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 3453 47888888877789999999999999999877
No 168
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=74.90 E-value=47 Score=30.50 Aligned_cols=97 Identities=15% Similarity=0.221 Sum_probs=58.1
Q ss_pred HHHHHhCCCCEEEecc-CCCH--------------HHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhh
Q 021144 174 VLILANSGADLIAFET-IPNK--------------LEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET-~p~~--------------~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~ 238 (317)
++...+.|+|.|-+-. .++. +.++.+++.+++.+ . .++|.+.+.++. +-.-+.+.++.+.
T Consensus 75 v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G--~--~v~~~~~~~~~~-~~~~~~~~~~~~~ 149 (259)
T cd07939 75 IEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRG--L--FVSVGAEDASRA-DPDFLIEFAEVAQ 149 (259)
T ss_pred HHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC--C--eEEEeeccCCCC-CHHHHHHHHHHHH
Confidence 3445678999876543 2222 34455666677665 3 456777665543 2222333444444
Q ss_pred cCCCceEEEEcCC----ChhhhHHHHHHHHhhCCCcEEEEeC
Q 021144 239 SCEQVVAVGINCT----SPRFIHGLILSVRKVTSKPVIIYPN 276 (317)
Q Consensus 239 ~~~~~~aiGvNC~----~p~~~~~~l~~l~~~~~~pl~vyPN 276 (317)
+ .+++.|.+.=+ .|..+..+++.+++..+.||.+...
T Consensus 150 ~-~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~H 190 (259)
T cd07939 150 E-AGADRLRFADTVGILDPFTTYELIRRLRAATDLPLEFHAH 190 (259)
T ss_pred H-CCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 3 46676665443 3899999999998876677776554
No 169
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=74.83 E-value=52 Score=30.53 Aligned_cols=94 Identities=17% Similarity=0.079 Sum_probs=60.6
Q ss_pred HHHHHhCCCCEEEec-cCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHH---HHHHhhcCCCceEEEEc
Q 021144 174 VLILANSGADLIAFE-TIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILE---CASIADSCEQVVAVGIN 249 (317)
Q Consensus 174 i~~l~~~gvD~l~~E-T~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~---a~~~~~~~~~~~aiGvN 249 (317)
++...+.|+|.|-+- ...++++++.+++.+++.+ ..|.+++. +.. +.+.+. .++.+.+ .+++.|.+-
T Consensus 88 l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G--~~v~~~~~--~a~----~~~~~~~~~~~~~~~~-~g~~~i~l~ 158 (266)
T cd07944 88 LEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKG--YEVFFNLM--AIS----GYSDEELLELLELVNE-IKPDVFYIV 158 (266)
T ss_pred HHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCC--CeEEEEEE--eec----CCCHHHHHHHHHHHHh-CCCCEEEEe
Confidence 444566899986443 4457888888888888876 55554443 222 244444 4444444 466766554
Q ss_pred CC----ChhhhHHHHHHHHhhCC--CcEEEEeC
Q 021144 250 CT----SPRFIHGLILSVRKVTS--KPVIIYPN 276 (317)
Q Consensus 250 C~----~p~~~~~~l~~l~~~~~--~pl~vyPN 276 (317)
=| .|+.+..+++.+++..+ .||.+...
T Consensus 159 DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~H 191 (266)
T cd07944 159 DSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAH 191 (266)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 33 49999999999988765 78876654
No 170
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=74.76 E-value=35 Score=34.62 Aligned_cols=99 Identities=19% Similarity=0.233 Sum_probs=62.5
Q ss_pred HHHHHhCCCCEE-EeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCC-
Q 021144 174 VLILANSGADLI-AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT- 251 (317)
Q Consensus 174 i~~l~~~gvD~l-~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~- 251 (317)
++...++|+|.| +|-.+.+++.++..++++++.+...-..+++++.+. + +=.-+.+.++.+.+ .+++.|.+-=+
T Consensus 101 v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~-~--t~e~~~~~a~~l~~-~Gad~I~i~Dt~ 176 (467)
T PRK14041 101 VKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSPV-H--TLEYYLEFARELVD-MGVDSICIKDMA 176 (467)
T ss_pred HHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCCC-C--CHHHHHHHHHHHHH-cCCCEEEECCcc
Confidence 344567899977 455667788888888888887733333344444220 0 11123344444444 46776666443
Q ss_pred ---ChhhhHHHHHHHHhhCCCcEEEEeC
Q 021144 252 ---SPRFIHGLILSVRKVTSKPVIIYPN 276 (317)
Q Consensus 252 ---~p~~~~~~l~~l~~~~~~pl~vyPN 276 (317)
.|..+..+++.+++..+.||.+.-.
T Consensus 177 G~l~P~~v~~Lv~~lk~~~~vpI~~H~H 204 (467)
T PRK14041 177 GLLTPKRAYELVKALKKKFGVPVEVHSH 204 (467)
T ss_pred CCcCHHHHHHHHHHHHHhcCCceEEEec
Confidence 4999999999999887888876653
No 171
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=74.73 E-value=5.7 Score=37.15 Aligned_cols=45 Identities=27% Similarity=0.314 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEE
Q 021144 162 SLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAW 213 (317)
Q Consensus 162 s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~ 213 (317)
+.+++.+ -.++++.+.++|+|.|++|-+|+ ++++.+.+.+ ++|++
T Consensus 156 t~~~a~~-~i~ra~a~~eAGA~~i~lE~v~~-~~~~~i~~~l-----~iP~i 200 (264)
T PRK00311 156 DEEAAEK-LLEDAKALEEAGAFALVLECVPA-ELAKEITEAL-----SIPTI 200 (264)
T ss_pred CHHHHHH-HHHHHHHHHHCCCCEEEEcCCCH-HHHHHHHHhC-----CCCEE
Confidence 4444444 44579999999999999999987 5666655532 37776
No 172
>PRK15452 putative protease; Provisional
Probab=74.70 E-value=26 Score=35.26 Aligned_cols=73 Identities=10% Similarity=-0.056 Sum_probs=47.7
Q ss_pred HHHHHHHhCCCCEEEec----------cCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhc--
Q 021144 172 RRVLILANSGADLIAFE----------TIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS-- 239 (317)
Q Consensus 172 ~qi~~l~~~gvD~l~~E----------T~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~-- 239 (317)
+++++.+++|+|.+.+. .-.+.+|++.+++.+++.+ +++++++.. +.....+..+...+..
T Consensus 14 e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g--~kvyvt~n~-----i~~e~el~~~~~~l~~l~ 86 (443)
T PRK15452 14 KNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALG--KKFYVVVNI-----APHNAKLKTFIRDLEPVI 86 (443)
T ss_pred HHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcC--CEEEEEecC-----cCCHHHHHHHHHHHHHHH
Confidence 35667778999999993 2345688999999888866 889988742 2222234444333321
Q ss_pred CCCceEEEEcCC
Q 021144 240 CEQVVAVGINCT 251 (317)
Q Consensus 240 ~~~~~aiGvNC~ 251 (317)
..++++|-|.--
T Consensus 87 ~~gvDgvIV~d~ 98 (443)
T PRK15452 87 AMKPDALIMSDP 98 (443)
T ss_pred hCCCCEEEEcCH
Confidence 257888877653
No 173
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=73.99 E-value=60 Score=31.51 Aligned_cols=105 Identities=13% Similarity=0.071 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhCCCCEEEeccCC---CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhc-CCC
Q 021144 167 KEFHRRRVLILANSGADLIAFETIP---NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS-CEQ 242 (317)
Q Consensus 167 ~~~h~~qi~~l~~~gvD~l~~ET~p---~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~-~~~ 242 (317)
.+.-++.+++-.+.|+.+-+=. ++ .-.|.+...+.+++..++.|+++++-+... .|.+.+++.+.++. ...
T Consensus 76 ~~in~~La~~a~~~G~~~~~Gs-~~~~~~~~~~~~~~~~vr~~~p~~p~~aNl~~~~~----~~~~~~~~~~~~~~~~ad 150 (352)
T PRK05437 76 KEINRKLAEAAEELGIAMGVGS-QRAALKDPELADSFSVVRKVAPDGLLFANLGAVQL----YGYGVEEAQRAVEMIEAD 150 (352)
T ss_pred HHHHHHHHHHHHHcCCCeEecc-cHhhccChhhHHHHHHHHHHCCCceEEeecCcccc----CCCCHHHHHHHHHhcCCC
Confidence 3344556666677886655422 12 012355666677776668999999976432 25555555544432 134
Q ss_pred ceEEEEcCC----Ch---hh---hHHHHHHHHhhCCCcEEEEeC
Q 021144 243 VVAVGINCT----SP---RF---IHGLILSVRKVTSKPVIIYPN 276 (317)
Q Consensus 243 ~~aiGvNC~----~p---~~---~~~~l~~l~~~~~~pl~vyPN 276 (317)
...+++||. .| .. +...++.+++..+.|+++.-+
T Consensus 151 al~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~ 194 (352)
T PRK05437 151 ALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEV 194 (352)
T ss_pred cEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 566888882 12 12 336677777777899999866
No 174
>PRK00865 glutamate racemase; Provisional
Probab=73.91 E-value=50 Score=30.48 Aligned_cols=53 Identities=23% Similarity=0.237 Sum_probs=38.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEE
Q 021144 156 DYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAW 213 (317)
Q Consensus 156 ~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~ 213 (317)
+||. -+.+++.++-.+.++.|.+.|+|++++=..+... .+++.+++.. ++|++
T Consensus 43 PYG~-ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa~~---~~l~~lr~~~-~iPvi 95 (261)
T PRK00865 43 PYGE-KSEEEIRERTLEIVEFLLEYGVKMLVIACNTASA---VALPDLRERY-DIPVV 95 (261)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHH---HHHHHHHHhC-CCCEE
Confidence 4544 6899999999999999999999999886554221 2345566543 58887
No 175
>PRK12999 pyruvate carboxylase; Reviewed
Probab=73.35 E-value=49 Score=37.36 Aligned_cols=86 Identities=21% Similarity=0.358 Sum_probs=56.1
Q ss_pred EEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCC---CHHHHHHHHHHHHHhCCCcc
Q 021144 135 LVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIP---NKLEAKAYAELLEEEGITIP 211 (317)
Q Consensus 135 ~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p---~~~Ea~a~~~~~~~~~~~~p 211 (317)
.+-++++..|+.+.+ +++.| +. ++|.+.++.+.+.|+|.|.+=-+- ...++..++.++++.- ++|
T Consensus 669 ~~~~~i~ytg~~~d~---~~~~~----~~----~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~-~ip 736 (1146)
T PRK12999 669 IAEAAICYTGDILDP---ARAKY----DL----DYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEV-DLP 736 (1146)
T ss_pred eEEEEEEEEecCCCC---CCCCC----CH----HHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHc-CCe
Confidence 345677777765542 22222 22 477788888999999999886443 5778888888888753 455
Q ss_pred EEEEEEEcCCCcccCCCcHHHHHHHhh
Q 021144 212 AWFSFNSKDGINVVSGDSILECASIAD 238 (317)
Q Consensus 212 v~iSf~~~~~~~l~~G~~l~~a~~~~~ 238 (317)
|.|-+.++ .|..+..++..++
T Consensus 737 --i~~H~Hnt----~Gla~an~laA~~ 757 (1146)
T PRK12999 737 --IHLHTHDT----SGNGLATYLAAAE 757 (1146)
T ss_pred --EEEEeCCC----CchHHHHHHHHHH
Confidence 45555443 5766766666665
No 176
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=73.03 E-value=32 Score=34.80 Aligned_cols=89 Identities=16% Similarity=0.144 Sum_probs=52.6
Q ss_pred CCCCEEEeccCCCHHHHH------HHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHH---HHHhhcC--CCceEEEE
Q 021144 180 SGADLIAFETIPNKLEAK------AYAELLEEEGITIPAWFSFNSKDGINVVSGDSILEC---ASIADSC--EQVVAVGI 248 (317)
Q Consensus 180 ~gvD~l~~ET~p~~~Ea~------a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a---~~~~~~~--~~~~aiGv 248 (317)
.+.|++++|+...+.+.- ...+.++..+ .|+++-..+.. |..+..+ +..++.. ..+.+|-+
T Consensus 121 ~~~D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l~--apVILV~d~~~------g~~~a~i~gt~~~l~~~~~~~i~GvIl 192 (475)
T TIGR00313 121 REYDYVVIEGAGSPAEINLLKRDLANMRIAELAN--ADAILVADIDR------GGVFASIYGTLKLLPENWRKLIKGIVI 192 (475)
T ss_pred hcCCEEEEECCCCccccccCcCCchHHHHHHHhC--CCEEEEEeCCc------cHHHHHHHHHHHHhChhhcCceEEEEE
Confidence 468999999998766521 1245555554 89887754432 2222222 2333321 24678999
Q ss_pred cCCCh--hhhHHHHHHHHhhCCCcE-EEEeC
Q 021144 249 NCTSP--RFIHGLILSVRKVTSKPV-IIYPN 276 (317)
Q Consensus 249 NC~~p--~~~~~~l~~l~~~~~~pl-~vyPN 276 (317)
|+..+ ..+...++.+.+.+..|+ .+.|-
T Consensus 193 Nrv~~~~~~~~~~~~~l~e~~gipvLG~ip~ 223 (475)
T TIGR00313 193 NKFRGNVDVLKSGIEKLEELTGIPVLGVLPY 223 (475)
T ss_pred eccCCcHHHHHHHHHHHHHhhCCCEEEEecC
Confidence 99854 334566667777677774 44453
No 177
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=72.67 E-value=56 Score=29.89 Aligned_cols=58 Identities=9% Similarity=0.145 Sum_probs=38.6
Q ss_pred CccEEEEEEEcCCCcccCCCcHH---HHHHHhhcCCCceEEEEcCCChh-----------------hhHHHHHHHHhhCC
Q 021144 209 TIPAWFSFNSKDGINVVSGDSIL---ECASIADSCEQVVAVGINCTSPR-----------------FIHGLILSVRKVTS 268 (317)
Q Consensus 209 ~~pv~iSf~~~~~~~l~~G~~l~---~a~~~~~~~~~~~aiGvNC~~p~-----------------~~~~~l~~l~~~~~ 268 (317)
..|+++++. |.+++ ++++.+. ..+++|-+||..|. .+..+++.++. .+
T Consensus 67 ~~~vivnv~---------~~~~ee~~~~a~~v~--~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~-~~ 134 (231)
T TIGR00736 67 RALVSVNVR---------FVDLEEAYDVLLTIA--EHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE-LN 134 (231)
T ss_pred cCCEEEEEe---------cCCHHHHHHHHHHHh--cCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-CC
Confidence 468998883 33444 4445554 36899999997543 34566666664 47
Q ss_pred CcEEEEeCCC
Q 021144 269 KPVIIYPNSG 278 (317)
Q Consensus 269 ~pl~vyPNaG 278 (317)
+|+.|.--.|
T Consensus 135 ~PVsvKiR~~ 144 (231)
T TIGR00736 135 KPIFVKIRGN 144 (231)
T ss_pred CcEEEEeCCC
Confidence 8998887665
No 178
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=72.46 E-value=61 Score=30.18 Aligned_cols=89 Identities=17% Similarity=0.244 Sum_probs=53.4
Q ss_pred HHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCce-EEEEcCC-
Q 021144 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVV-AVGINCT- 251 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~-aiGvNC~- 251 (317)
++.+.++|||.+++=-+| .+|....++.+++.+ +..+.-++ ..++.+..-..+..+.+.. .+..+=+
T Consensus 112 ~~~~~~aGvdgviipDLP-~ee~~~~~~~~~~~g--i~~I~lv~--------PtT~~eri~~i~~~a~gFIY~vS~~GvT 180 (263)
T CHL00200 112 IKKISQAGVKGLIIPDLP-YEESDYLISVCNLYN--IELILLIA--------PTSSKSRIQKIARAAPGCIYLVSTTGVT 180 (263)
T ss_pred HHHHHHcCCeEEEecCCC-HHHHHHHHHHHHHcC--CCEEEEEC--------CCCCHHHHHHHHHhCCCcEEEEcCCCCC
Confidence 445778999999999888 588888888899876 44333332 1223333333333222222 2232321
Q ss_pred C-----hhhhHHHHHHHHhhCCCcEEE
Q 021144 252 S-----PRFIHGLILSVRKVTSKPVII 273 (317)
Q Consensus 252 ~-----p~~~~~~l~~l~~~~~~pl~v 273 (317)
+ ++.+..+++.+++.++.|+.|
T Consensus 181 G~~~~~~~~~~~~i~~ir~~t~~Pi~v 207 (263)
T CHL00200 181 GLKTELDKKLKKLIETIKKMTNKPIIL 207 (263)
T ss_pred CCCccccHHHHHHHHHHHHhcCCCEEE
Confidence 1 356777777788777888765
No 179
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=72.38 E-value=94 Score=29.86 Aligned_cols=225 Identities=19% Similarity=0.206 Sum_probs=129.0
Q ss_pred hHHHHHHHHHHHHhhccccccccccccHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCC
Q 021144 54 PHLVRKVHLDYLDAGANIIITASYQATIQGFEAK-GFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSR 132 (317)
Q Consensus 54 Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~~-g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~ 132 (317)
.+.+.+.-++-++.|-.-+.. |+..+...++. |-+...-..++.+|++..++.. .
T Consensus 53 ~d~l~~~v~~~~~~Gi~~v~l--Fgv~~~~~KD~~gs~A~~~~g~v~~air~iK~~~----------------------p 108 (320)
T cd04823 53 IDELLKEAEEAVDLGIPAVAL--FPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAF----------------------P 108 (320)
T ss_pred HHHHHHHHHHHHHcCCCEEEE--ecCCCcccCCcccccccCCCChHHHHHHHHHHhC----------------------C
Confidence 355666668888999774433 44422222221 2111111247788887776542 1
Q ss_pred CeEEEEe--eCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCC-C
Q 021144 133 PVLVAAS--VGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGI-T 209 (317)
Q Consensus 133 ~~~Vags--iGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~-~ 209 (317)
+.+|..+ +-||-..=++|---.+ .+.-++-.+...+|+-.++++|+|+++==-|-+- .+.+|.+++.+.+- +
T Consensus 109 ~l~vi~DVclc~YT~hGHcGil~~~----~idND~Tl~~L~~~Avs~A~AGADiVAPSdMMDG-rV~aIR~aLd~~g~~~ 183 (320)
T cd04823 109 ELGIITDVALDPYTSHGHDGIVRDG----GILNDETVEVLCKQALVQAEAGADIVAPSDMMDG-RIGAIREALDAEGFTN 183 (320)
T ss_pred CcEEEEeeeccCCCCCCcceeccCC----cCcCHHHHHHHHHHHHHHHHhCCCEEEcccchhh-HHHHHHHHHHHCCCCC
Confidence 3455554 4555444333321111 1566777777888999999999999985555544 35678888887652 4
Q ss_pred ccEEEEEEEcC------------C---------CcccCCCcHHHHHHHhh--cCCCceEEEEcCCChhhhHHHHHHHHhh
Q 021144 210 IPAWFSFNSKD------------G---------INVVSGDSILECASIAD--SCEQVVAVGINCTSPRFIHGLILSVRKV 266 (317)
Q Consensus 210 ~pv~iSf~~~~------------~---------~~l~~G~~l~~a~~~~~--~~~~~~aiGvNC~~p~~~~~~l~~l~~~ 266 (317)
+|++ |.+.+= + ..-.|=..-.+|+..+. -..|++.+.|-=.-| -+.+++.+++.
T Consensus 184 v~Im-SYsaKyaS~fYGPFRdAa~Sap~fgDRksYQmdp~n~~eAlre~~~Di~EGAD~lMVKPal~--YLDIi~~~k~~ 260 (320)
T cd04823 184 VSIL-SYAAKYASAFYGPFRDALGSAPRKGDKKTYQMDPANSREALREVALDIAEGADMVMVKPGMP--YLDIIRRVKDE 260 (320)
T ss_pred Ccee-echHHhhhhccchhHHHhcCCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCch--HHHHHHHHHHh
Confidence 5554 443221 0 01112222334544432 124788888875543 35678888888
Q ss_pred CCCcEEEEeCCCCc---cccccccccccCCCChhhHHHHHHHHHHcccccc
Q 021144 267 TSKPVIIYPNSGET---YNAELKKWVVSFSLHFFPLELILNPFASCRLISF 314 (317)
Q Consensus 267 ~~~pl~vyPNaG~~---~d~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~~ 314 (317)
++.|+.+|-=+||- +-...+.|.+. ...+.+....+.++|.=-|
T Consensus 261 ~~lPvaaYqVSGEYaMikaAa~~G~~d~----~~~~~Esl~~ikRAGAd~I 307 (320)
T cd04823 261 FGVPTFAYQVSGEYAMLKAAAQNGWLDE----DKVMLESLLAFKRAGADGI 307 (320)
T ss_pred cCCCEEEEEccHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHhcCCCEE
Confidence 89999999999972 33344567521 2345666666777775333
No 180
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=72.35 E-value=88 Score=29.52 Aligned_cols=144 Identities=15% Similarity=0.131 Sum_probs=74.5
Q ss_pred CeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec---c------CCCHHHHHH---HH
Q 021144 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFE---T------IPNKLEAKA---YA 200 (317)
Q Consensus 133 ~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~E---T------~p~~~Ea~a---~~ 200 (317)
+..|.|-+-=+.+...||+.| .+.+++.+ +++.+++.|+|+|=+- | ++.-+|++- ++
T Consensus 14 ~~~imGIlNvTpDSFsdgg~~-------~~~~~a~~----~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI 82 (282)
T PRK11613 14 HPHVMGILNVTPDSFSDGGTH-------NSLIDAVK----HANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVV 82 (282)
T ss_pred CceEEEEEcCCCCCCCCCCCC-------CCHHHHHH----HHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 456888776666666666443 24455444 5777888999999555 2 333346444 44
Q ss_pred HHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCC----ChhhhHHHHHHHHhhCCCcEEEEeC
Q 021144 201 ELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT----SPRFIHGLILSVRKVTSKPVIIYPN 276 (317)
Q Consensus 201 ~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~----~p~~~~~~l~~l~~~~~~pl~vyPN 276 (317)
+.+++. ..+.+|+ |-...+-+-..++. |++. ||=. .| .+...+ ++ .+.|+++.++
T Consensus 83 ~~l~~~---~~~~ISI---------DT~~~~va~~AL~~--Gadi--INDI~g~~d~-~~~~~~---a~-~~~~vVlmh~ 141 (282)
T PRK11613 83 EAIAQR---FEVWISV---------DTSKPEVIRESAKA--GAHI--INDIRSLSEP-GALEAA---AE-TGLPVCLMHM 141 (282)
T ss_pred HHHHhc---CCCeEEE---------ECCCHHHHHHHHHc--CCCE--EEECCCCCCH-HHHHHH---HH-cCCCEEEEcC
Confidence 555532 2344566 22223322233332 5554 3322 33 333333 33 3689999999
Q ss_pred CCCccccccccccccCC-CC---hhhHHHHHHHHHHccc
Q 021144 277 SGETYNAELKKWVVSFS-LH---FFPLELILNPFASCRL 311 (317)
Q Consensus 277 aG~~~d~~~~~w~~~~~-~~---~~~~~~~~~~w~~~~~ 311 (317)
.|.+-+.... ..|+ .- -+.|.+.+....++|+
T Consensus 142 ~g~p~~~~~~---~~y~dv~~~v~~~l~~~i~~a~~~GI 177 (282)
T PRK11613 142 QGNPKTMQEA---PKYDDVFAEVNRYFIEQIARCEAAGI 177 (282)
T ss_pred CCCCCccccC---CCcccHHHHHHHHHHHHHHHHHHcCC
Confidence 8854221100 0111 00 1345556666777776
No 181
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=72.28 E-value=21 Score=36.23 Aligned_cols=67 Identities=9% Similarity=0.083 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhCCCCEEEeccCC-CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEE
Q 021144 169 FHRRRVLILANSGADLIAFETIP-NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVG 247 (317)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~ET~p-~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiG 247 (317)
...++++.|+++|||.|++-+-. +-.-...+++.+++..+++||++.+ +.+.+.+..+++ .++++|.
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~----------~~t~~~~~~l~~--~G~d~i~ 292 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGN----------VVSAEGVRDLLE--AGANIIK 292 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEec----------cCCHHHHHHHHH--hCCCEEE
Confidence 45578999999999999998543 3444555667777765579999843 445566665554 3666653
No 182
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=72.19 E-value=49 Score=30.96 Aligned_cols=103 Identities=11% Similarity=0.039 Sum_probs=63.4
Q ss_pred HHHHHHHhCCCCEEEeccCCCHH---HHHHHHHHHHHhCCCccEEEEEEEc--CCC-c-------ccCCCcHHHHHHHhh
Q 021144 172 RRVLILANSGADLIAFETIPNKL---EAKAYAELLEEEGITIPAWFSFNSK--DGI-N-------VVSGDSILECASIAD 238 (317)
Q Consensus 172 ~qi~~l~~~gvD~l~~ET~p~~~---Ea~a~~~~~~~~~~~~pv~iSf~~~--~~~-~-------l~~G~~l~~a~~~~~ 238 (317)
++++.+.+.|||-+.+-|..--+ .-.-+.+++++.+ +-.+++|+.++ ++. + -.++.++.+.+..+.
T Consensus 95 e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G-~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~ 173 (262)
T PLN02446 95 ENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVG-KQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFL 173 (262)
T ss_pred HHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhC-CCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHH
Confidence 46777888999999999864221 0334445566665 35688999886 331 1 224567777655554
Q ss_pred cCCCceEEEEcCCChhh-----hHHHHHHHHhhCCCcEEEEeC
Q 021144 239 SCEQVVAVGINCTSPRF-----IHGLILSVRKVTSKPVIIYPN 276 (317)
Q Consensus 239 ~~~~~~aiGvNC~~p~~-----~~~~l~~l~~~~~~pl~vyPN 276 (317)
+ .++..|-++..+-+. =..+++++.+.++.|+++---
T Consensus 174 ~-~g~~eii~TdI~rDGtl~G~d~el~~~l~~~~~ipVIASGG 215 (262)
T PLN02446 174 A-AYCDEFLVHGVDVEGKRLGIDEELVALLGEHSPIPVTYAGG 215 (262)
T ss_pred H-hCCCEEEEEEEcCCCcccCCCHHHHHHHHhhCCCCEEEECC
Confidence 4 245566665543211 145778888888888765443
No 183
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=72.10 E-value=1.2e+02 Score=31.77 Aligned_cols=65 Identities=20% Similarity=0.215 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhCCCCEEEeccCC---CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhc
Q 021144 168 EFHRRRVLILANSGADLIAFETIP---NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS 239 (317)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~ET~p---~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~ 239 (317)
++|.+.++.+.+.|+|.|.+=-+. ...++..++..+++.. ++| +.+-+.++ .|..+...+..++.
T Consensus 154 ~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~-~~p--i~~H~Hnt----~Gla~An~laAv~a 221 (592)
T PRK09282 154 EKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEV-DLP--VQLHSHCT----SGLAPMTYLKAVEA 221 (592)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhC-CCe--EEEEEcCC----CCcHHHHHHHHHHh
Confidence 567778888999999999776333 5678888888888753 355 45655544 57677776666653
No 184
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=72.01 E-value=51 Score=29.88 Aligned_cols=98 Identities=14% Similarity=0.060 Sum_probs=58.7
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcc---cCCCcHHHHHHHhhcC-CCceEEEE
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINV---VSGDSILECASIADSC-EQVVAVGI 248 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l---~~G~~l~~a~~~~~~~-~~~~aiGv 248 (317)
+++.+...|+|-+++-|.. +.. ..+.+++++.+ +-.+++|+.++++ .. .++.++.+.++.+... ..+...-+
T Consensus 92 dv~~~l~~Ga~~viigt~~-~~~-~~~~~~~~~~~-~~~iivslD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~di 167 (233)
T cd04723 92 NAQEWLKRGASRVIVGTET-LPS-DDDEDRLAALG-EQRLVLSLDFRGG-QLLKPTDFIGPEELLRRLAKWPEELIVLDI 167 (233)
T ss_pred HHHHHHHcCCCeEEEccee-ccc-hHHHHHHHhcC-CCCeEEEEeccCC-eeccccCcCCHHHHHHHHHHhCCeEEEEEc
Confidence 4566777899988876654 222 45566667665 2368999988654 33 4677788888887653 12222223
Q ss_pred cCCC--hhhhHHHHHHHHhhCCCcEEEE
Q 021144 249 NCTS--PRFIHGLILSVRKVTSKPVIIY 274 (317)
Q Consensus 249 NC~~--p~~~~~~l~~l~~~~~~pl~vy 274 (317)
+..+ -..-..+++.+.+.++.|+++-
T Consensus 168 ~~~G~~~g~~~~~~~~i~~~~~ipvi~~ 195 (233)
T cd04723 168 DRVGSGQGPDLELLERLAARADIPVIAA 195 (233)
T ss_pred CccccCCCcCHHHHHHHHHhcCCCEEEe
Confidence 2221 1122356677777677886554
No 185
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=71.96 E-value=91 Score=29.51 Aligned_cols=81 Identities=16% Similarity=0.108 Sum_probs=43.1
Q ss_pred HHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCc--HHHHHHHhhcCCCceEEEEcCC
Q 021144 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDS--ILECASIADSCEQVVAVGINCT 251 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~--l~~a~~~~~~~~~~~aiGvNC~ 251 (317)
++.+.+.|+|.+-++.-.++.|++..+ + ..+.+.-.+++.+.+..|+. +.+.++.+-+. +...+...|.
T Consensus 237 l~~~~~~g~d~~~~d~~~dl~e~~~~~------g--~~~~i~Gnidp~~~l~~gt~e~i~~~~~~~l~~-g~~Il~~Gc~ 307 (326)
T cd03307 237 LEYIAQCGFDGISVDEKVDVKTAKEIV------G--GRAALIGNVSPSQTLLNGTPEDVKAEARKCLED-GVDILAPGCG 307 (326)
T ss_pred HHHHHHcCCCeecccccCCHHHHHHHc------C--CceEEEeCCChHHHhcCCCHHHHHHHHHHHHHc-cCCEecCcCC
Confidence 455666899999999888888765322 2 12333344444334556642 33333333222 3356677785
Q ss_pred -C----hhhhHHHHHHH
Q 021144 252 -S----PRFIHGLILSV 263 (317)
Q Consensus 252 -~----p~~~~~~l~~l 263 (317)
. ++.+..+++..
T Consensus 308 i~~~tp~env~a~v~a~ 324 (326)
T cd03307 308 IAPRTPLANLKAMVEAR 324 (326)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 2 35555555443
No 186
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=71.43 E-value=25 Score=34.72 Aligned_cols=38 Identities=13% Similarity=0.274 Sum_probs=21.9
Q ss_pred CCCCCCccccccccC-CChHHHHHHHHHHHHhhcccccccccc
Q 021144 37 GADLNDPLWSAKCLV-SSPHLVRKVHLDYLDAGANIIITASYQ 78 (317)
Q Consensus 37 G~~~~~~lws~~~ll-~~Pe~V~~iH~~Yl~AGAdiI~TnTy~ 78 (317)
|+.+..|+|.+..-+ ...+.++++ .++|+--|.|-|-.
T Consensus 17 Gl~l~NP~i~ASgp~t~~~e~~~~~----~~~g~GAVV~KTi~ 55 (385)
T PLN02495 17 GLKMPNPFVIGSGPPGTNYTVMKRA----FDEGWGGVIAKTVS 55 (385)
T ss_pred CEEcCCCcEeCCccCCCCHHHHHHH----HhcCCeEEEecccc
Confidence 666777887655444 344555554 44566666655544
No 187
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=71.37 E-value=71 Score=28.59 Aligned_cols=95 Identities=24% Similarity=0.240 Sum_probs=54.1
Q ss_pred HHhCCCCEEEecc--CCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCC-----c-------ccCCCcHHHHHHHhhcCCC
Q 021144 177 LANSGADLIAFET--IPNKLEAKAYAELLEEEGITIPAWFSFNSKDGI-----N-------VVSGDSILECASIADSCEQ 242 (317)
Q Consensus 177 l~~~gvD~l~~ET--~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~-----~-------l~~G~~l~~a~~~~~~~~~ 242 (317)
+.+.|+|.+.+-| +.+.+-+ .++.++.+ ...+++|+.++.+. . ...+.++.+.++.+.+ .+
T Consensus 92 ~~~~G~~~vilg~~~l~~~~~~---~~~~~~~~-~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~G 166 (232)
T TIGR03572 92 LLSLGADKVSINTAALENPDLI---EEAARRFG-SQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQ-LG 166 (232)
T ss_pred HHHcCCCEEEEChhHhcCHHHH---HHHHHHcC-CceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHH-cC
Confidence 4446899888764 3344333 33344443 22366888876531 1 1134556677777765 47
Q ss_pred ceEEEEcCCCh-----hhhHHHHHHHHhhCCCcEEEEeCCC
Q 021144 243 VVAVGINCTSP-----RFIHGLILSVRKVTSKPVIIYPNSG 278 (317)
Q Consensus 243 ~~aiGvNC~~p-----~~~~~~l~~l~~~~~~pl~vyPNaG 278 (317)
++.|-+..... ..-.++++++++..+.|++ .++|
T Consensus 167 ~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvi--a~GG 205 (232)
T TIGR03572 167 AGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVI--ALGG 205 (232)
T ss_pred CCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEE--EECC
Confidence 77666665322 1225777888877778854 4444
No 188
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=71.27 E-value=16 Score=34.73 Aligned_cols=112 Identities=18% Similarity=0.123 Sum_probs=62.3
Q ss_pred hCCCC-EEEeccCCCHHHHH----HHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCCh
Q 021144 179 NSGAD-LIAFETIPNKLEAK----AYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSP 253 (317)
Q Consensus 179 ~~gvD-~l~~ET~p~~~Ea~----a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~p 253 (317)
+.|++ +..=|-+.. .+.. .....+.....+.|+++.+.-. +.+.+.++++.+.. .++++|-+||..|
T Consensus 19 ~~g~~~~~~temi~a-~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g~------~~~~~~~aa~~~~~-~~~~~IDlN~GCP 90 (309)
T PF01207_consen 19 EFGADDLTYTEMISA-KAILRSNKKTIRLLPFLPNERPLIVQLFGN------DPEDLAEAAEIVAE-LGFDGIDLNMGCP 90 (309)
T ss_dssp CCTSSSBEE-S-EEH-HHHHCT-HHHHHHS-GCC-T-TEEEEEE-S-------HHHHHHHHHHHCC-TT-SEEEEEE---
T ss_pred HHCCCeEEEcCCEEE-CcccccccceeecccccccccceeEEEeec------cHHHHHHHHHhhhc-cCCcEEeccCCCC
Confidence 35666 777676553 2221 1222233333346899888422 34456677777665 5889999999743
Q ss_pred -----------------hhhHHHHHHHHhhCCCcEEEEeCCCCccccccccccccCCCChhhHHHHHHHHHHccc
Q 021144 254 -----------------RFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVVSFSLHFFPLELILNPFASCRL 311 (317)
Q Consensus 254 -----------------~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~w~~~~~~~~~~~~~~~~~w~~~~~ 311 (317)
+.+..+|+.+++..+.|+.|.-=.|.. .++++..++++...++|.
T Consensus 91 ~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~-------------~~~~~~~~~~~~l~~~G~ 152 (309)
T PF01207_consen 91 APKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWD-------------DSPEETIEFARILEDAGV 152 (309)
T ss_dssp SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT---------------CHHHHHHHHHHHHTT-
T ss_pred HHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccc-------------cchhHHHHHHHHhhhccc
Confidence 345667778887778888777655421 235567778888888883
No 189
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=71.21 E-value=57 Score=30.05 Aligned_cols=98 Identities=17% Similarity=0.163 Sum_probs=55.4
Q ss_pred HHHHHhCCCCEEEecc--CCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCC----c-------ccCCCcHHHHHHHhhcC
Q 021144 174 VLILANSGADLIAFET--IPNKLEAKAYAELLEEEGITIPAWFSFNSKDGI----N-------VVSGDSILECASIADSC 240 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET--~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~----~-------l~~G~~l~~a~~~~~~~ 240 (317)
++.+.+.|+|.+.+-| +.+..-+ .+++++.+ +..+.+|+.++.+. . -....++.+.++.+.+
T Consensus 89 ~~~l~~~G~~~vvigs~~~~~~~~~---~~~~~~~~-~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~- 163 (258)
T PRK01033 89 AKKIFSLGVEKVSINTAALEDPDLI---TEAAERFG-SQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEA- 163 (258)
T ss_pred HHHHHHCCCCEEEEChHHhcCHHHH---HHHHHHhC-CCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHH-
Confidence 3344567999988765 3444333 34444443 22377888876541 1 1234567777777765
Q ss_pred CCceEEEEcCCCh-----hhhHHHHHHHHhhCCCcEEEEeCCC
Q 021144 241 EQVVAVGINCTSP-----RFIHGLILSVRKVTSKPVIIYPNSG 278 (317)
Q Consensus 241 ~~~~aiGvNC~~p-----~~~~~~l~~l~~~~~~pl~vyPNaG 278 (317)
.++..+-+++..- ..-..+++++++..+.|+++ ++|
T Consensus 164 ~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIa--sGG 204 (258)
T PRK01033 164 LGAGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIA--LGG 204 (258)
T ss_pred cCCCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEE--eCC
Confidence 4566665554321 11245677777777888654 444
No 190
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=70.47 E-value=36 Score=29.77 Aligned_cols=94 Identities=10% Similarity=0.110 Sum_probs=55.4
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcC--
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC-- 250 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC-- 250 (317)
+++.+.++|+|++.+=-.........+++.+++.+ +++++.+. ...++++++..... .+++.++++=
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g--~~~~~~~~-------~~~t~~~~~~~~~~--~g~d~v~~~pg~ 136 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHG--KEVQVDLI-------NVKDKVKRAKELKE--LGADYIGVHTGL 136 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcC--CEEEEEec-------CCCChHHHHHHHHH--cCCCEEEEcCCc
Confidence 67778889999997644434444567777788865 88887541 12445555554443 3788888862
Q ss_pred ----CChhhhHHHHHHHHhhCCCcEEEEeCCCC
Q 021144 251 ----TSPRFIHGLILSVRKVTSKPVIIYPNSGE 279 (317)
Q Consensus 251 ----~~p~~~~~~l~~l~~~~~~pl~vyPNaG~ 279 (317)
..+ .....++.+++..+.+ .+.+-+|-
T Consensus 137 ~~~~~~~-~~~~~i~~l~~~~~~~-~i~v~GGI 167 (206)
T TIGR03128 137 DEQAKGQ-NPFEDLQTILKLVKEA-RVAVAGGI 167 (206)
T ss_pred CcccCCC-CCHHHHHHHHHhcCCC-cEEEECCc
Confidence 112 1233455555544433 23444564
No 191
>PRK15452 putative protease; Provisional
Probab=70.18 E-value=66 Score=32.36 Aligned_cols=109 Identities=15% Similarity=0.214 Sum_probs=64.2
Q ss_pred CCChHHHHHHHHHHHHhhcccccc--ccccccHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 021144 51 VSSPHLVRKVHLDYLDAGANIIIT--ASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGR 128 (317)
Q Consensus 51 l~~Pe~V~~iH~~Yl~AGAdiI~T--nTy~as~~~l~~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~ 128 (317)
..+++.++.+ +++|||.|.- ..|.+... ...++.+ -++.++++|++.
T Consensus 10 ag~~e~l~aA----i~~GADaVY~G~~~~~~R~~---~~~f~~e----dl~eav~~ah~~-------------------- 58 (443)
T PRK15452 10 AGTLKNMRYA----FAYGADAVYAGQPRYSLRVR---NNEFNHE----NLALGINEAHAL-------------------- 58 (443)
T ss_pred CCCHHHHHHH----HHCCCCEEEECCCccchhhh---ccCCCHH----HHHHHHHHHHHc--------------------
Confidence 4566666644 6899997664 33443221 1234433 255677777542
Q ss_pred CCCCCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCC
Q 021144 129 ISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGI 208 (317)
Q Consensus 129 ~~~~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~ 208 (317)
+.+++|+--.=| ..+++. .+.+.++.+.+.|||.|++= ++ .++..+++..+
T Consensus 59 --g~kvyvt~n~i~-------------------~e~el~-~~~~~l~~l~~~gvDgvIV~---d~----G~l~~~ke~~p 109 (443)
T PRK15452 59 --GKKFYVVVNIAP-------------------HNAKLK-TFIRDLEPVIAMKPDALIMS---DP----GLIMMVREHFP 109 (443)
T ss_pred --CCEEEEEecCcC-------------------CHHHHH-HHHHHHHHHHhCCCCEEEEc---CH----HHHHHHHHhCC
Confidence 347787752111 123333 34445777888999999865 44 33455666555
Q ss_pred CccEEEEEEEc
Q 021144 209 TIPAWFSFNSK 219 (317)
Q Consensus 209 ~~pv~iSf~~~ 219 (317)
++|+++|+.+.
T Consensus 110 ~l~ih~stqln 120 (443)
T PRK15452 110 EMPIHLSVQAN 120 (443)
T ss_pred CCeEEEEeccc
Confidence 78999998764
No 192
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=70.08 E-value=82 Score=28.81 Aligned_cols=97 Identities=18% Similarity=0.138 Sum_probs=56.0
Q ss_pred HHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCC--------------cccCCCcHHHHHHHhhcC
Q 021144 175 LILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGI--------------NVVSGDSILECASIADSC 240 (317)
Q Consensus 175 ~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~--------------~l~~G~~l~~a~~~~~~~ 240 (317)
+.+...|+|.+.+-|.. +.+...+.++.+..+ +..+++|+.+++.. ....+..+.+.++.+.+
T Consensus 90 ~~~~~~Ga~~vivgt~~-~~~p~~~~~~~~~~~-~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~- 166 (254)
T TIGR00735 90 DKLLRAGADKVSINTAA-VKNPELIYELADRFG-SQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEK- 166 (254)
T ss_pred HHHHHcCCCEEEEChhH-hhChHHHHHHHHHcC-CCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHH-
Confidence 33445799998876533 223333334344443 35688899876431 11234566677777765
Q ss_pred CCceEEEEcCCCh-----hhhHHHHHHHHhhCCCcEEEE
Q 021144 241 EQVVAVGINCTSP-----RFIHGLILSVRKVTSKPVIIY 274 (317)
Q Consensus 241 ~~~~aiGvNC~~p-----~~~~~~l~~l~~~~~~pl~vy 274 (317)
.+++.|-+..... ..-.++++++++.++.|+++.
T Consensus 167 ~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~ 205 (254)
T TIGR00735 167 LGAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIAS 205 (254)
T ss_pred cCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEe
Confidence 4777777755432 122467778887777885543
No 193
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=69.99 E-value=90 Score=28.62 Aligned_cols=127 Identities=17% Similarity=0.164 Sum_probs=73.1
Q ss_pred HHHHhhccccccccccccHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEeeCC
Q 021144 63 DYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGS 142 (317)
Q Consensus 63 ~Yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP 142 (317)
..+++|.+.|.....-.........+.+.+++.+.....++.|++. ...|. +++
T Consensus 77 ~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~------------------------G~~v~--~~~ 130 (259)
T cd07939 77 AALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDR------------------------GLFVS--VGA 130 (259)
T ss_pred HHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC------------------------CCeEE--Eee
Confidence 3567899987766543333333445777655444444455444421 12333 222
Q ss_pred CcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEe-ccCC--CHHHHHHHHHHHHHhCCCccEEEEEEEc
Q 021144 143 YGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAF-ETIP--NKLEAKAYAELLEEEGITIPAWFSFNSK 219 (317)
Q Consensus 143 ~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~-ET~p--~~~Ea~a~~~~~~~~~~~~pv~iSf~~~ 219 (317)
. +.+. .+.+ ++.+.++.+.+.|+|.|.+ -|+- ...++..++..+++.. |+-+.|-+.
T Consensus 131 ~---------~~~~----~~~~----~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~---~~~l~~H~H 190 (259)
T cd07939 131 E---------DASR----ADPD----FLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAAT---DLPLEFHAH 190 (259)
T ss_pred c---------cCCC----CCHH----HHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhc---CCeEEEEec
Confidence 1 1122 2444 4555666777889998855 3544 5778888888888753 344566665
Q ss_pred CCCcccCCCcHHHHHHHhhc
Q 021144 220 DGINVVSGDSILECASIADS 239 (317)
Q Consensus 220 ~~~~l~~G~~l~~a~~~~~~ 239 (317)
++ .|..+..++..+..
T Consensus 191 n~----~Gla~An~laAi~a 206 (259)
T cd07939 191 ND----LGLATANTLAAVRA 206 (259)
T ss_pred CC----CChHHHHHHHHHHh
Confidence 54 47777777777753
No 194
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=69.70 E-value=54 Score=29.84 Aligned_cols=96 Identities=16% Similarity=0.096 Sum_probs=54.6
Q ss_pred HHHHHHhCCCCEEEeccC--CCHHHHHHHHHHHHHhCCCccEEEEEEEcCC-----CcccCCCcHHHHHHHhhcCCCceE
Q 021144 173 RVLILANSGADLIAFETI--PNKLEAKAYAELLEEEGITIPAWFSFNSKDG-----INVVSGDSILECASIADSCEQVVA 245 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~--p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~-----~~l~~G~~l~~a~~~~~~~~~~~a 245 (317)
+++.+.+.|+|-+.+-|. .+.+-++.+++.+ + ..+.+|+.++.. +...+..++.+.++.+.+ .++..
T Consensus 89 dv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~---~--~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~-~G~~~ 162 (241)
T PRK14024 89 SLEAALATGCARVNIGTAALENPEWCARVIAEH---G--DRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDS-AGCSR 162 (241)
T ss_pred HHHHHHHCCCCEEEECchHhCCHHHHHHHHHHh---h--hhEEEEEEEeccEeccCCeeecCccHHHHHHHHHh-cCCCE
Confidence 344566689998877653 4555555554433 3 236666655432 222234456677777765 35555
Q ss_pred EEEcCC-------ChhhhHHHHHHHHhhCCCcEEEEeCCC
Q 021144 246 VGINCT-------SPRFIHGLILSVRKVTSKPVIIYPNSG 278 (317)
Q Consensus 246 iGvNC~-------~p~~~~~~l~~l~~~~~~pl~vyPNaG 278 (317)
+-++.. +| -..+++++.+..+.|+++ |+|
T Consensus 163 iiv~~~~~~g~~~G~--d~~~i~~i~~~~~ipvia--sGG 198 (241)
T PRK14024 163 YVVTDVTKDGTLTGP--NLELLREVCARTDAPVVA--SGG 198 (241)
T ss_pred EEEEeecCCCCccCC--CHHHHHHHHhhCCCCEEE--eCC
Confidence 444442 23 246677777777888554 665
No 195
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=69.62 E-value=1.5e+02 Score=31.00 Aligned_cols=64 Identities=16% Similarity=0.132 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhCCCCEEEeccC---CCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhh
Q 021144 168 EFHRRRVLILANSGADLIAFETI---PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (317)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~ET~---p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~ 238 (317)
++|.+.++.+.+.|+|.|.+=-+ -...++..++..+++.. ++| +.+-+.++ .|..+...+..+.
T Consensus 149 ~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~-~~p--i~~H~Hnt----~Gla~An~laAve 215 (582)
T TIGR01108 149 ETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRF-GLP--VHLHSHAT----TGMAEMALLKAIE 215 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhC-CCc--eEEEecCC----CCcHHHHHHHHHH
Confidence 46777788888899999977633 35778888888888753 355 45655544 4666666665554
No 196
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=69.59 E-value=1.1e+02 Score=29.66 Aligned_cols=57 Identities=16% Similarity=0.075 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEe-----ccCCCHHHHHHHHHHHHHhC---CCccEEEEEEEc
Q 021144 163 LETLKEFHRRRVLILANSGADLIAF-----ETIPNKLEAKAYAELLEEEG---ITIPAWFSFNSK 219 (317)
Q Consensus 163 ~~el~~~h~~qi~~l~~~gvD~l~~-----ET~p~~~Ea~a~~~~~~~~~---~~~pv~iSf~~~ 219 (317)
.+++...|++.++.|.++||+.|=| =+.++..+...+.++.+... ++.++.++..+.
T Consensus 177 ~~dla~~y~~el~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~l~tyfg 241 (360)
T cd03312 177 LDKLLPVYKELLKKLAAAGAEWVQIDEPALVLDLPEEWLAAFKRAYEELAKAAPGLKLLLATYFG 241 (360)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEeeCChhhcCCCHHHHHHHHHHHHHHhcCCCCCcEEEEeccc
Confidence 4568889999999999999998832 23344445566666665542 135677775543
No 197
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=69.58 E-value=62 Score=30.77 Aligned_cols=88 Identities=18% Similarity=0.135 Sum_probs=53.8
Q ss_pred HHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEc
Q 021144 170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGIN 249 (317)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvN 249 (317)
+.++++.+.+.+|+++.+ +..... ..++.+++.+ .+++..+ .+++.+.+..+ .++++|.+.
T Consensus 76 ~~~~~~~~~~~~v~~v~~-~~g~p~---~~i~~lk~~g--~~v~~~v-----------~s~~~a~~a~~--~GaD~Ivv~ 136 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTT-GAGNPG---KYIPRLKENG--VKVIPVV-----------ASVALAKRMEK--AGADAVIAE 136 (307)
T ss_pred HHHHHHHHHhCCCCEEEE-cCCCcH---HHHHHHHHcC--CEEEEEc-----------CCHHHHHHHHH--cCCCEEEEE
Confidence 356888889999999987 444443 2566677765 6776433 23445544333 377777664
Q ss_pred C---CC---hhhhHHHHHHHHhhCCCcEEEEeCCC
Q 021144 250 C---TS---PRFIHGLILSVRKVTSKPVIIYPNSG 278 (317)
Q Consensus 250 C---~~---p~~~~~~l~~l~~~~~~pl~vyPNaG 278 (317)
. .+ ......+++++++..+.|++ .++|
T Consensus 137 g~eagGh~g~~~~~~ll~~v~~~~~iPvi--aaGG 169 (307)
T TIGR03151 137 GMESGGHIGELTTMALVPQVVDAVSIPVI--AAGG 169 (307)
T ss_pred CcccCCCCCCCcHHHHHHHHHHHhCCCEE--EECC
Confidence 4 21 11245678888877778854 4444
No 198
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=69.54 E-value=42 Score=30.76 Aligned_cols=84 Identities=23% Similarity=0.252 Sum_probs=50.6
Q ss_pred CeEEEecchHHHHHHCCCCCCCcc----------ccccccCCChHHHHHHHHHHHHhhccccccccccccHHHH--HhCC
Q 021144 21 GYSVVDGGFATELERHGADLNDPL----------WSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGF--EAKG 88 (317)
Q Consensus 21 ~~lilDGgmgT~L~~~G~~~~~~l----------ws~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l--~~~g 88 (317)
.+.++||-|=.-||+.|+....++ .-..+.+..++.- ++-.+||||||..|- +.+..++ .+.+
T Consensus 123 Tv~~iDG~~R~~lEetGmG~~~Evemlr~A~~k~l~t~~yV~s~~eA----qa~~~aGadiiv~hm-g~ttgG~Igar~~ 197 (276)
T COG5564 123 TVGLIDGRMRASLEETGMGYGLEVEMLREAHAKDLLTTPYVFSFEEA----QAMTKAGADIIVAHM-GLTTGGLIGARSA 197 (276)
T ss_pred eeEEecchhhhhHHHhCcchHHHHHHHHHHHhccccccceecCHHHH----HHHHHcCcceeeecc-cccccceeccccc
Confidence 478999999999998876432111 1112223344332 234679999998663 2222222 3346
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 021144 89 FSTEEAEALLRRSVEIACEAR 109 (317)
Q Consensus 89 ~~~~~~~~l~~~av~lAr~A~ 109 (317)
++.+++.++++...+-+|..+
T Consensus 198 ~Sl~~~vel~~~~~~aar~v~ 218 (276)
T COG5564 198 LSLADCVELIELAAEAARGVR 218 (276)
T ss_pred cCHHHHHHHHHHHHHHHhhhh
Confidence 676777788888777777665
No 199
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=69.44 E-value=78 Score=28.57 Aligned_cols=96 Identities=15% Similarity=0.134 Sum_probs=60.9
Q ss_pred HHHHHHhCCCCEEEeccCCC---------------HHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHH---HHH
Q 021144 173 RVLILANSGADLIAFETIPN---------------KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSIL---ECA 234 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~---------------~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~---~a~ 234 (317)
.++.+.+.|+|.+.+=.-.+ ++++...++.+++.+ .++.+++..-... ..++. +.+
T Consensus 79 ~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G--~~v~~~~~~~~~~----~~~~~~l~~~~ 152 (265)
T cd03174 79 GIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAG--LEVEGSLEDAFGC----KTDPEYVLEVA 152 (265)
T ss_pred hHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC--CeEEEEEEeecCC----CCCHHHHHHHH
Confidence 45667778898886554443 677777788888766 6777766321110 13444 444
Q ss_pred HHhhcCCCceEEEEcC----CChhhhHHHHHHHHhhCC-CcEEEEe
Q 021144 235 SIADSCEQVVAVGINC----TSPRFIHGLILSVRKVTS-KPVIIYP 275 (317)
Q Consensus 235 ~~~~~~~~~~aiGvNC----~~p~~~~~~l~~l~~~~~-~pl~vyP 275 (317)
+.+.+ .+++.|.+.= ..|+.+..+++.+++..+ .|+.+..
T Consensus 153 ~~~~~-~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~ 197 (265)
T cd03174 153 KALEE-AGADEISLKDTVGLATPEEVAELVKALREALPDVPLGLHT 197 (265)
T ss_pred HHHHH-cCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 44443 3565555432 358999999999998765 7777766
No 200
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=68.97 E-value=67 Score=31.44 Aligned_cols=97 Identities=16% Similarity=0.207 Sum_probs=58.3
Q ss_pred HHHHHhCCCCEEEeccC-CCH--------------HHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhh
Q 021144 174 VLILANSGADLIAFETI-PNK--------------LEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET~-p~~--------------~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~ 238 (317)
++...++|+|.+-+-.- ++. +.++.+++.+++.+ . -+.|++.+.++. +-.-+.+.++.+.
T Consensus 81 i~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G--~--~v~~~~ed~~r~-~~~~l~~~~~~~~ 155 (378)
T PRK11858 81 IDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHG--L--YVSFSAEDASRT-DLDFLIEFAKAAE 155 (378)
T ss_pred HHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC--C--eEEEEeccCCCC-CHHHHHHHHHHHH
Confidence 55566789997755432 232 33445666667655 3 456667665553 2233444555554
Q ss_pred cCCCceEEEEcCC----ChhhhHHHHHHHHhhCCCcEEEEeC
Q 021144 239 SCEQVVAVGINCT----SPRFIHGLILSVRKVTSKPVIIYPN 276 (317)
Q Consensus 239 ~~~~~~aiGvNC~----~p~~~~~~l~~l~~~~~~pl~vyPN 276 (317)
+ .+++.|.+-=| .|..+..+++.+++..+.||.+...
T Consensus 156 ~-~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~H 196 (378)
T PRK11858 156 E-AGADRVRFCDTVGILDPFTMYELVKELVEAVDIPIEVHCH 196 (378)
T ss_pred h-CCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 4 45665544322 4899999999998877778877664
No 201
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=68.92 E-value=60 Score=33.95 Aligned_cols=96 Identities=15% Similarity=0.212 Sum_probs=62.3
Q ss_pred HHHHHhCCCCEE-EeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHH---HHHHhhcCCCceEEEEc
Q 021144 174 VLILANSGADLI-AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILE---CASIADSCEQVVAVGIN 249 (317)
Q Consensus 174 i~~l~~~gvD~l-~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~---a~~~~~~~~~~~aiGvN 249 (317)
++...++|+|.| +|-.+.++..++..++++++.+...-+.++++..+ . .++.. .++.+.+ .+++.|.+-
T Consensus 102 v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p--~----~t~~~~~~~a~~l~~-~Gad~I~i~ 174 (592)
T PRK09282 102 VEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTSP--V----HTIEKYVELAKELEE-MGCDSICIK 174 (592)
T ss_pred HHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccCC--C----CCHHHHHHHHHHHHH-cCCCEEEEC
Confidence 334567899988 55577788888888999998773333334444321 1 23443 3444443 477776664
Q ss_pred CC----ChhhhHHHHHHHHhhCCCcEEEEeC
Q 021144 250 CT----SPRFIHGLILSVRKVTSKPVIIYPN 276 (317)
Q Consensus 250 C~----~p~~~~~~l~~l~~~~~~pl~vyPN 276 (317)
=+ .|..+..+++.+++..+.||.+.-.
T Consensus 175 Dt~G~~~P~~~~~lv~~lk~~~~~pi~~H~H 205 (592)
T PRK09282 175 DMAGLLTPYAAYELVKALKEEVDLPVQLHSH 205 (592)
T ss_pred CcCCCcCHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 33 3899999999999887788776553
No 202
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=68.83 E-value=11 Score=35.16 Aligned_cols=45 Identities=31% Similarity=0.402 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEE
Q 021144 162 SLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAW 213 (317)
Q Consensus 162 s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~ 213 (317)
+.+++.+ -.++++.+.++|+|.|++|-+| .+.++.+.+.+ ++|++
T Consensus 155 t~~~a~~-~i~~A~a~e~AGA~~ivlE~vp-~~~a~~It~~l-----~iP~i 199 (263)
T TIGR00222 155 DEEAAKK-LLEDALALEEAGAQLLVLECVP-VELAAKITEAL-----AIPVI 199 (263)
T ss_pred CHHHHHH-HHHHHHHHHHcCCCEEEEcCCc-HHHHHHHHHhC-----CCCEE
Confidence 5455544 5567999999999999999999 45656555432 37754
No 203
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=68.64 E-value=1.2e+02 Score=29.62 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=68.0
Q ss_pred HHhhccccccccccccHHHH-HhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEeeCCC
Q 021144 65 LDAGANIIITASYQATIQGF-EAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSY 143 (317)
Q Consensus 65 l~AGAdiI~TnTy~as~~~l-~~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~ 143 (317)
+++|++.|..... +|...+ ...+.+.+++.+....+++.|++. + ..|..+. +.
T Consensus 85 ~~~g~~~i~i~~~-~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~----------------------G--~~v~~~~-ed 138 (378)
T PRK11858 85 IDCGVDAVHIFIA-TSDIHIKHKLKKTREEVLERMVEAVEYAKDH----------------------G--LYVSFSA-ED 138 (378)
T ss_pred HhCCcCEEEEEEc-CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC----------------------C--CeEEEEe-cc
Confidence 4678887666543 333333 344777666666666666665531 1 2233321 11
Q ss_pred cCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEe-ccCC--CHHHHHHHHHHHHHhCCCccEEEEEEEcC
Q 021144 144 GAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAF-ETIP--NKLEAKAYAELLEEEGITIPAWFSFNSKD 220 (317)
Q Consensus 144 g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~-ET~p--~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~ 220 (317)
.+. .+.+ +..+.++.+.+.|+|.|.+ -|+- ...++..+++.+++.- ++-++|-+.+
T Consensus 139 ----------~~r----~~~~----~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~---~~~l~~H~Hn 197 (378)
T PRK11858 139 ----------ASR----TDLD----FLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAV---DIPIEVHCHN 197 (378)
T ss_pred ----------CCC----CCHH----HHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhc---CCeEEEEecC
Confidence 111 2444 4445566677889998855 3543 5778888888887642 4456777766
Q ss_pred CCcccCCCcHHHHHHHh
Q 021144 221 GINVVSGDSILECASIA 237 (317)
Q Consensus 221 ~~~l~~G~~l~~a~~~~ 237 (317)
+ .|..++.++..+
T Consensus 198 d----~GlA~AN~laAv 210 (378)
T PRK11858 198 D----FGMATANALAGI 210 (378)
T ss_pred C----cCHHHHHHHHHH
Confidence 5 244444444444
No 204
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=68.49 E-value=1e+02 Score=32.34 Aligned_cols=64 Identities=17% Similarity=0.108 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhCCCCEEEeccCC---CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhh
Q 021144 168 EFHRRRVLILANSGADLIAFETIP---NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (317)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~ET~p---~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~ 238 (317)
++|.+.++.+.+.|+|.|.+=-+. ...++..++.++++.. ++|+ .|-+.++ .|..+...+..++
T Consensus 154 e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~-~ipi--~~H~Hnt----~Gla~an~laAie 220 (596)
T PRK14042 154 DNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQAT-GLPV--HLHSHST----SGLASICHYEAVL 220 (596)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhc-CCEE--EEEeCCC----CCcHHHHHHHHHH
Confidence 467777888888999999887443 5677888888888753 4554 5555443 5666666666655
No 205
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=68.23 E-value=71 Score=33.44 Aligned_cols=66 Identities=11% Similarity=0.143 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhCCCCEEEeccC---CCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhc
Q 021144 167 KEFHRRRVLILANSGADLIAFETI---PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS 239 (317)
Q Consensus 167 ~~~h~~qi~~l~~~gvD~l~~ET~---p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~ 239 (317)
.++|.+.++.+.+.|+|.|.+=-+ -...++..++..+++.. ++| +.|-+.++ .|..+...+..++.
T Consensus 154 ~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~-~~p--i~~H~Hnt----~GlA~An~laAieA 222 (593)
T PRK14040 154 LQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRV-DVP--LHLHCHAT----TGLSTATLLKAIEA 222 (593)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhc-CCe--EEEEECCC----CchHHHHHHHHHHc
Confidence 467888888899999999977633 25778888888888753 455 45555443 57667766666653
No 206
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=68.09 E-value=12 Score=35.07 Aligned_cols=100 Identities=26% Similarity=0.368 Sum_probs=0.0
Q ss_pred EEecchHHHHHHCCCCCCCccccccccCCChHHHHHHH----------------HHHHHhhccccccccccccHHHHHhC
Q 021144 24 VVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVH----------------LDYLDAGANIIITASYQATIQGFEAK 87 (317)
Q Consensus 24 ilDGgmgT~L~~~G~~~~~~lws~~~ll~~Pe~V~~iH----------------~~Yl~AGAdiI~TnTy~as~~~l~~~ 87 (317)
++||-+-..||..|+....+. |.|+..| +...+||||||..+-=-..-..+...
T Consensus 120 liDG~fR~~LEe~Gmgy~~EV----------emi~~A~~~gl~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~ 189 (268)
T PF09370_consen 120 LIDGQFRQNLEETGMGYDREV----------EMIRKAHEKGLFTTAYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAK 189 (268)
T ss_dssp G--HHHHHHHHHTT--HHHHH----------HHHHHHHHTT-EE--EE-SHHHHHHHHHHT-SEEEEE-SS---------
T ss_pred eeccHHHHHHHhcCCCHHHHH----------HHHHHHHHCCCeeeeeecCHHHHHHHHHcCCCEEEecCCccCCCCcCcc
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHH
Q 021144 88 -GFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETL 166 (317)
Q Consensus 88 -g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el 166 (317)
..+.+++.+..++-.+.|++.. .++.|..-=||.. +++++
T Consensus 190 ~~~sl~~a~~~~~~i~~aa~~v~----------------------~dii~l~hGGPI~-----------------~p~D~ 230 (268)
T PF09370_consen 190 TALSLEEAAERIQEIFDAARAVN----------------------PDIIVLCHGGPIA-----------------TPEDA 230 (268)
T ss_dssp -S--HHHHHHHHHHHHHHHHCC-----------------------TT-EEEEECTTB------------------SHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHhC----------------------CCeEEEEeCCCCC-----------------CHHHH
Q ss_pred HHHHHH
Q 021144 167 KEFHRR 172 (317)
Q Consensus 167 ~~~h~~ 172 (317)
+..++.
T Consensus 231 ~~~l~~ 236 (268)
T PF09370_consen 231 QYVLRN 236 (268)
T ss_dssp HHHHHH
T ss_pred HHHHhc
No 207
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=68.08 E-value=1.2e+02 Score=29.22 Aligned_cols=227 Identities=13% Similarity=0.143 Sum_probs=131.9
Q ss_pred hHHHHHHHHHHHHhhccccccccccccHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCC
Q 021144 54 PHLVRKVHLDYLDAGANIIITASYQATIQGFEAK--GFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISS 131 (317)
Q Consensus 54 Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~~--g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~ 131 (317)
.+.+.+.-++-++.|-.-+.. |+......++. |-+...-.-++.++++..++..
T Consensus 50 ~d~l~~~~~~~~~~Gi~~v~L--Fgv~~~~~Kd~~~gs~a~~~~g~v~~air~iK~~~---------------------- 105 (320)
T cd04824 50 VNRLEEFLRPLVAKGLRSVIL--FGVPLKPGKDDRSGSAADDEDGPVIQAIKLIREEF---------------------- 105 (320)
T ss_pred HHHHHHHHHHHHHCCCCEEEE--eCCCccccCCcCccccccCCCChHHHHHHHHHHhC----------------------
Confidence 356666667788888774443 44432222111 1110111247788888777543
Q ss_pred CCeEEEEe--eCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCC-
Q 021144 132 RPVLVAAS--VGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGI- 208 (317)
Q Consensus 132 ~~~~Vags--iGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~- 208 (317)
.+.+|-.+ +-||-..=++|---.+ ..+.-++-.+...+|+-.++++|+|+++==.|-+- .+.+|.+++.+.+-
T Consensus 106 pdl~vi~Dvclc~YT~hGHcGil~~~---g~vdND~Tl~~L~k~Avs~A~AGADiVAPSdMMDG-rV~aIR~aLD~~G~~ 181 (320)
T cd04824 106 PELLIACDVCLCEYTSHGHCGILYED---GTINNEASVKRLAEVALAYAKAGAHIVAPSDMMDG-RVRAIKQALIQAGLG 181 (320)
T ss_pred CCcEEEEeeeccCCCCCCcceeECCC---CcCcCHHHHHHHHHHHHHHHHhCCCEEeccccccc-HHHHHHHHHHHCCCc
Confidence 13444444 4555444333321111 12556777777888888999999999996666655 35788888888764
Q ss_pred -CccEEEEEEEcC-------------------C--CcccCCCcHHHHHHHhh--cCCCceEEEEcCCChhhhHHHHHHHH
Q 021144 209 -TIPAWFSFNSKD-------------------G--INVVSGDSILECASIAD--SCEQVVAVGINCTSPRFIHGLILSVR 264 (317)
Q Consensus 209 -~~pv~iSf~~~~-------------------~--~~l~~G~~l~~a~~~~~--~~~~~~aiGvNC~~p~~~~~~l~~l~ 264 (317)
++|++ |.+.+= + ....|=..-.+|++.+. -..|++.+.|-=.-| -+.+++.++
T Consensus 182 ~~v~Im-SYsaKyaS~fYGPFRdAa~Sap~~gDRksYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~--YLDIi~~~k 258 (320)
T cd04824 182 NKVSVM-SYSAKFASCLYGPFRDAACSAPSFGDRRCYQLPPGARGLALRAVERDVSEGADMIMVKPGTP--YLDIVREAK 258 (320)
T ss_pred cCCeee-ehHHHhhhhccchHHHHhcCCCCCCCccccCCCCcCHHHHHHHHHhhHHhCCCEEEEcCCch--HHHHHHHHH
Confidence 45544 544221 0 01112222334554432 235789888875543 356788888
Q ss_pred hhC-CCcEEEEeCCCCc---cccccccccccCCCChhhHHHHHHHHHHccccccc
Q 021144 265 KVT-SKPVIIYPNSGET---YNAELKKWVVSFSLHFFPLELILNPFASCRLISFF 315 (317)
Q Consensus 265 ~~~-~~pl~vyPNaG~~---~d~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~~~ 315 (317)
+.+ +.|+.+|-=+||- .-...+.|.+ ....+.+....+.++|.=-||
T Consensus 259 ~~~~~~PvaaYqVSGEYaMikaAa~~G~iD----e~~~~~Esl~~ikRAGAd~Ii 309 (320)
T cd04824 259 DKHPDLPLAVYHVSGEYAMLHAAAEAGAFD----LKRAVLEAMTGFRRAGADIII 309 (320)
T ss_pred HhccCCCEEEEEccHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHhcCCCEEE
Confidence 888 9999999999962 3334456752 124567777778888864444
No 208
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=67.96 E-value=91 Score=32.56 Aligned_cols=99 Identities=16% Similarity=0.161 Sum_probs=62.0
Q ss_pred HHHHHhCCCCEE-EeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCC-
Q 021144 174 VLILANSGADLI-AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT- 251 (317)
Q Consensus 174 i~~l~~~gvD~l-~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~- 251 (317)
++...++|+|.| +|-.+.+...++..++++++.+ +.+-++++...... -+-.-+.+.++.+.+ .+++.|.+-=+
T Consensus 97 v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G--~~v~~~i~~t~~p~-~~~~~~~~~~~~~~~-~Gad~I~i~Dt~ 172 (582)
T TIGR01108 97 VKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHG--AHAQGTISYTTSPV-HTLETYLDLAEELLE-MGVDSICIKDMA 172 (582)
T ss_pred HHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcC--CEEEEEEEeccCCC-CCHHHHHHHHHHHHH-cCCCEEEECCCC
Confidence 344567899987 4446677888888999999877 44444332221111 111223344444443 46776665433
Q ss_pred ---ChhhhHHHHHHHHhhCCCcEEEEeC
Q 021144 252 ---SPRFIHGLILSVRKVTSKPVIIYPN 276 (317)
Q Consensus 252 ---~p~~~~~~l~~l~~~~~~pl~vyPN 276 (317)
.|..+..+++.+++..+.||.+.-.
T Consensus 173 G~~~P~~v~~lv~~lk~~~~~pi~~H~H 200 (582)
T TIGR01108 173 GILTPKAAYELVSALKKRFGLPVHLHSH 200 (582)
T ss_pred CCcCHHHHHHHHHHHHHhCCCceEEEec
Confidence 4899999999999887788766543
No 209
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=67.90 E-value=76 Score=29.86 Aligned_cols=100 Identities=13% Similarity=0.084 Sum_probs=58.4
Q ss_pred HHHHhCCCCEEEeccCCC---------------HHHHHHHHHHHHHhCCCccEEEEEE--EcCCCcccCCCcHHHHHHHh
Q 021144 175 LILANSGADLIAFETIPN---------------KLEAKAYAELLEEEGITIPAWFSFN--SKDGINVVSGDSILECASIA 237 (317)
Q Consensus 175 ~~l~~~gvD~l~~ET~p~---------------~~Ea~a~~~~~~~~~~~~pv~iSf~--~~~~~~l~~G~~l~~a~~~~ 237 (317)
+...+.|+|.+.+-.-.+ +++++.+++.+++.+...-+.++++ +.++++. +=..+.+.++.+
T Consensus 86 e~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~-~~~~~~~~~~~~ 164 (287)
T PRK05692 86 EAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEV-PPEAVADVAERL 164 (287)
T ss_pred HHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCC-CHHHHHHHHHHH
Confidence 334567999875553221 3346677788887763233334443 3444443 222334445555
Q ss_pred hcCCCceEEEEcCC----ChhhhHHHHHHHHhhCC-CcEEEEeC
Q 021144 238 DSCEQVVAVGINCT----SPRFIHGLILSVRKVTS-KPVIIYPN 276 (317)
Q Consensus 238 ~~~~~~~aiGvNC~----~p~~~~~~l~~l~~~~~-~pl~vyPN 276 (317)
.+ .+++.|.+-=+ .|..+..+++.+++..+ .||.+.-.
T Consensus 165 ~~-~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~H 207 (287)
T PRK05692 165 FA-LGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFH 207 (287)
T ss_pred HH-cCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 44 46776665433 48999999999988764 67776554
No 210
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=67.70 E-value=35 Score=32.81 Aligned_cols=113 Identities=14% Similarity=0.166 Sum_probs=63.5
Q ss_pred CC-CEEEeccCCCHHHHHH-HHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCChh----
Q 021144 181 GA-DLIAFETIPNKLEAKA-YAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPR---- 254 (317)
Q Consensus 181 gv-D~l~~ET~p~~~Ea~a-~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~p~---- 254 (317)
|+ |++.-|-+..-.=+.. ..+.+.....+.|+++++.-. +-+.+.+++..+.+ .+.++|-|||.+|.
T Consensus 34 g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~g~------~p~~~~~aA~~~~~-~g~d~IdlN~gCP~~~v~ 106 (333)
T PRK11815 34 SRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLGGS------DPADLAEAAKLAED-WGYDEINLNVGCPSDRVQ 106 (333)
T ss_pred CCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEeCC------CHHHHHHHHHHHHh-cCCCEEEEcCCCCHHHcc
Confidence 44 7887776643211100 122233333467999888311 22345566666655 47899999997652
Q ss_pred -------------hhHHHHHHHHhhCCCcEEEEeCCCCccccccccccccCCCChhhHHHHHHHHHHccc
Q 021144 255 -------------FIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVVSFSLHFFPLELILNPFASCRL 311 (317)
Q Consensus 255 -------------~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~w~~~~~~~~~~~~~~~~~w~~~~~ 311 (317)
.+..+++.+++..+.|+.|+--.|. +. ..+.+...++++.+.++|+
T Consensus 107 ~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~--~~---------~~t~~~~~~~~~~l~~aG~ 165 (333)
T PRK11815 107 NGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGI--DD---------QDSYEFLCDFVDTVAEAGC 165 (333)
T ss_pred CCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeee--CC---------CcCHHHHHHHHHHHHHhCC
Confidence 2346677777777889988753221 11 0123445566666667664
No 211
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=67.68 E-value=1e+02 Score=28.28 Aligned_cols=109 Identities=13% Similarity=0.037 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHHHHh-CCCCEEEeccCC--CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHh
Q 021144 161 VSLETLKEFHRRRVLILAN-SGADLIAFETIP--NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA 237 (317)
Q Consensus 161 ~s~~el~~~h~~qi~~l~~-~gvD~l~~ET~p--~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~ 237 (317)
.+.++..+.+ +.+.+ .+||++=+|-.. ..+.++.++..+++.+ ..+++|.- +-..+++=..+.+.+..+
T Consensus 80 ~~~~~~~~ll----~~~~~~~~~d~vDiE~~~~~~~~~~~~l~~~~~~~~--~~vI~S~H--~F~~TP~~~~l~~~~~~m 151 (238)
T PRK13575 80 FTNDLYLNLL----SDLANINGIDMIDIEWQADIDIEKHQRLITHLQQYN--KEVVISHH--NFESTPPLDELKFIFFKM 151 (238)
T ss_pred CCHHHHHHHH----HHHHHhCCCCEEEEEcccCCChHHHHHHHHHHHHcC--CEEEEecC--CCCCCCCHHHHHHHHHHH
Confidence 3555444433 33433 468999999643 4555666666666644 88999883 111222223344555555
Q ss_pred hcCCCceEEEEcCC--ChhhhHHHHHHHHhh---CCCcEE--EEeCCC
Q 021144 238 DSCEQVVAVGINCT--SPRFIHGLILSVRKV---TSKPVI--IYPNSG 278 (317)
Q Consensus 238 ~~~~~~~aiGvNC~--~p~~~~~~l~~l~~~---~~~pl~--vyPNaG 278 (317)
.. .+++.+=+-|. ++..+..+++..... .+.|++ .+.+.|
T Consensus 152 ~~-~gaDi~KiAv~~~~~~Dvl~Ll~~~~~~~~~~~~p~i~i~MG~~G 198 (238)
T PRK13575 152 QK-FNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLG 198 (238)
T ss_pred HH-hCCCEEEEEecCCCHHHHHHHHHHHHHHHhccCCCEEEEeCCCCC
Confidence 44 45666666664 577888887765432 456765 444555
No 212
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=67.61 E-value=1.4e+02 Score=30.72 Aligned_cols=116 Identities=21% Similarity=0.173 Sum_probs=67.0
Q ss_pred HHHHHhhccccccccccccHHHH-HhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEee
Q 021144 62 LDYLDAGANIIITASYQATIQGF-EAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASV 140 (317)
Q Consensus 62 ~~Yl~AGAdiI~TnTy~as~~~l-~~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~~~~Vagsi 140 (317)
+.-+++|+++|....- +|...+ ...+.+.++..+....+++.|++. +.+ |. +
T Consensus 92 e~~~~~g~~~i~i~~~-~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~----------------------G~~--v~--~ 144 (524)
T PRK12344 92 QALLDAGTPVVTIFGK-SWDLHVTEALRTTLEENLAMIRDSVAYLKAH----------------------GRE--VI--F 144 (524)
T ss_pred HHHHhCCCCEEEEEEC-CCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc----------------------CCe--EE--E
Confidence 3456788887665432 333333 344777776666677777766642 112 32 2
Q ss_pred CCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec-cC--CCHHHHHHHHHHHHHhCCCccEEEEEE
Q 021144 141 GSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFE-TI--PNKLEAKAYAELLEEEGITIPAWFSFN 217 (317)
Q Consensus 141 GP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~E-T~--p~~~Ea~a~~~~~~~~~~~~pv~iSf~ 217 (317)
++-.. .| + |. .+. +|..+.++.+.+.|+|.|.+= |+ ....++..+++.+++. ..+.++|-
T Consensus 145 ~~e~~--~D-----a-~r--~d~----~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~---~~v~i~~H 207 (524)
T PRK12344 145 DAEHF--FD-----G-YK--ANP----EYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAA---PGVPLGIH 207 (524)
T ss_pred ccccc--cc-----c-cc--CCH----HHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHh---cCCeEEEE
Confidence 22100 01 1 11 132 455556777888999988765 33 3567888888888764 24667888
Q ss_pred EcCC
Q 021144 218 SKDG 221 (317)
Q Consensus 218 ~~~~ 221 (317)
|.++
T Consensus 208 ~HND 211 (524)
T PRK12344 208 AHND 211 (524)
T ss_pred ECCC
Confidence 8765
No 213
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=67.60 E-value=74 Score=29.39 Aligned_cols=95 Identities=21% Similarity=0.224 Sum_probs=65.2
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCc------ccCCCcHHHHHHHhhcCCCceEE
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGIN------VVSGDSILECASIADSCEQVVAV 246 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~------l~~G~~l~~a~~~~~~~~~~~ai 246 (317)
.++.|++.|++-+.+-|+. +..-.-+.+++++.+ -.+++++.++++.. -.++.++.+.++.+.. .++..|
T Consensus 89 ~v~~ll~~G~~rViiGt~a-v~~p~~v~~~~~~~g--~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~-~g~~~i 164 (241)
T COG0106 89 DVEALLDAGVARVIIGTAA-VKNPDLVKELCEEYG--DRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEE-VGLAHI 164 (241)
T ss_pred HHHHHHHCCCCEEEEecce-ecCHHHHHHHHHHcC--CcEEEEEEccCCccccccccccccCCHHHHHHHHHh-cCCCeE
Confidence 4667888999999999998 556666777778876 67888999987532 2355678888888875 344443
Q ss_pred EEc-------CCChhhhHHHHHHHHhhCCCcEEE
Q 021144 247 GIN-------CTSPRFIHGLILSVRKVTSKPVII 273 (317)
Q Consensus 247 GvN-------C~~p~~~~~~l~~l~~~~~~pl~v 273 (317)
-+- |.+|+ ..+++++.+.++.|++.
T Consensus 165 i~TdI~~DGtl~G~n--~~l~~~l~~~~~ipvia 196 (241)
T COG0106 165 LYTDISRDGTLSGPN--VDLVKELAEAVDIPVIA 196 (241)
T ss_pred EEEecccccccCCCC--HHHHHHHHHHhCcCEEE
Confidence 332 33343 35667777777888654
No 214
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=67.48 E-value=68 Score=32.94 Aligned_cols=97 Identities=14% Similarity=0.003 Sum_probs=56.9
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCC-
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT- 251 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~- 251 (317)
.++..++.|+|+|=+|-... .++...+..++.. +.++++|+- +-..+++-+.+.+.++.+.. .+++.+=+-+.
T Consensus 102 ll~~~~~~~~d~iDiEl~~~-~~~~~~~~~~~~~--~~~vI~S~H--~f~~tP~~~el~~~~~~~~~-~gaDi~Kia~~~ 175 (529)
T PLN02520 102 ALRLAMELGADYVDVELKVA-HEFINSISGKKPE--KCKVIVSSH--NYENTPSVEELGNLVARIQA-TGADIVKIATTA 175 (529)
T ss_pred HHHHHHHhCCCEEEEEcCCc-hhHHHHHHhhhhc--CCEEEEEec--CCCCCCCHHHHHHHHHHHHH-hCCCEEEEecCC
Confidence 34455567899999996443 2445555555543 478999883 11122222233344444443 46777777775
Q ss_pred -ChhhhHHHHHHHHhhCCCcEEEEeC
Q 021144 252 -SPRFIHGLILSVRKVTSKPVIIYPN 276 (317)
Q Consensus 252 -~p~~~~~~l~~l~~~~~~pl~vyPN 276 (317)
++..+..+++...+ .+.|++.+.-
T Consensus 176 ~~~~D~~~ll~~~~~-~~~p~i~~~M 200 (529)
T PLN02520 176 LDITDVARMFQITVH-SQVPTIGLVM 200 (529)
T ss_pred CCHHHHHHHHHHHhh-cCCCEEEEec
Confidence 46677777764443 4789876554
No 215
>PRK06852 aldolase; Validated
Probab=67.39 E-value=1.1e+02 Score=29.39 Aligned_cols=100 Identities=12% Similarity=0.139 Sum_probs=55.5
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcc--------cCCCcHHHHHHHhh-cCCCc
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINV--------VSGDSILECASIAD-SCEQV 243 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l--------~~G~~l~~a~~~~~-~~~~~ 243 (317)
.++.+.++|+|.++.= +.+++.......++|+++-++-...-.- .--.++++|++.=. ...++
T Consensus 64 ~i~~~~~~g~dav~~~--------~G~l~~~~~~~~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~A 135 (304)
T PRK06852 64 LFRIASKAKIGVFATQ--------LGLIARYGMDYPDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNI 135 (304)
T ss_pred HHHHHHhcCCCEEEeC--------HHHHHhhccccCCCcEEEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCc
Confidence 4566777899999853 4555444333346898888763211000 11234666665321 12357
Q ss_pred eEEEEcCC-ChhhhHHHHHHHHh------hCCCcEE--EEeCCCCc
Q 021144 244 VAVGINCT-SPRFIHGLILSVRK------VTSKPVI--IYPNSGET 280 (317)
Q Consensus 244 ~aiGvNC~-~p~~~~~~l~~l~~------~~~~pl~--vyPNaG~~ 280 (317)
+||++.+- +.+.-...|+.+.+ ....|++ +||-....
T Consensus 136 dAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i 181 (304)
T PRK06852 136 LGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAV 181 (304)
T ss_pred eEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCccc
Confidence 88888884 33332334443333 2478875 69987654
No 216
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=67.38 E-value=26 Score=33.06 Aligned_cols=61 Identities=8% Similarity=0.037 Sum_probs=43.3
Q ss_pred HHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcC
Q 021144 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC 250 (317)
+...+++|+|.|.+.+|+ .+|++.+++.++. ..| +.. .-|-+++.+.++.. .+++.|.+-+
T Consensus 207 a~ea~~~gaDiI~LDn~s-~e~l~~av~~~~~---~~~--lea--------SGGI~~~ni~~yA~--tGVD~Is~Ga 267 (281)
T PRK06106 207 LEEALELGVDAVLLDNMT-PDTLREAVAIVAG---RAI--TEA--------SGRITPETAPAIAA--SGVDLISVGW 267 (281)
T ss_pred HHHHHHcCCCEEEeCCCC-HHHHHHHHHHhCC---Cce--EEE--------ECCCCHHHHHHHHh--cCCCEEEeCh
Confidence 444557999999999986 7888888886652 233 222 24678887777765 5888888776
No 217
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=67.26 E-value=1.1e+02 Score=34.60 Aligned_cols=65 Identities=18% Similarity=0.351 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhCCCCEEEeccCC---CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhh
Q 021144 167 KEFHRRRVLILANSGADLIAFETIP---NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (317)
Q Consensus 167 ~~~h~~qi~~l~~~gvD~l~~ET~p---~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~ 238 (317)
.+||.+.++.+.+.|+|.|.+--+. ...++..++.++++.- ++|+- +-+.++ .|..+...+..++
T Consensus 688 l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~-~~pi~--~H~Hdt----~Gla~an~laA~e 755 (1143)
T TIGR01235 688 LKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKT-DLPIH--FHTHDT----SGIAVASMLAAVE 755 (1143)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhc-CCeEE--EEECCC----CCcHHHHHHHHHH
Confidence 4578888889999999999887554 5677888888888754 56654 444443 5766766666665
No 218
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=67.18 E-value=30 Score=32.55 Aligned_cols=65 Identities=9% Similarity=0.053 Sum_probs=44.2
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcC
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC 250 (317)
|++..+++|+|.|.+..|+ .++++.+++.+++.. ..+.+..+ .|-++..+.++.. .+++.|-+-.
T Consensus 200 ea~ea~~~GaDiI~lDn~~-~e~l~~~v~~l~~~~--~~~~leas--------GGI~~~ni~~ya~--~GvD~is~ga 264 (277)
T TIGR01334 200 QALTVLQASPDILQLDKFT-PQQLHHLHERLKFFD--HIPTLAAA--------GGINPENIADYIE--AGIDLFITSA 264 (277)
T ss_pred HHHHHHHcCcCEEEECCCC-HHHHHHHHHHHhccC--CCEEEEEE--------CCCCHHHHHHHHh--cCCCEEEeCc
Confidence 4555667999999999865 888888888877533 23444442 4777887777665 4677664433
No 219
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=67.04 E-value=1.1e+02 Score=28.62 Aligned_cols=54 Identities=22% Similarity=0.161 Sum_probs=31.3
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHH
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECAS 235 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~ 235 (317)
.++.+.+.|+|++-++...++.|++.. .+ ..+.+.-.++....+..|+ .+++.+
T Consensus 235 ~~~~l~~~~~d~~~~d~~~dl~~~~~~------~g--~~~~i~G~id~~~~l~~gt-~eei~~ 288 (330)
T cd03465 235 ILELMADLGADVFSIDVTVDLAEAKKK------VG--DKACLMGNLDPIDVLLNGS-PEEIKE 288 (330)
T ss_pred HHHHHHHhCCCeEeecccCCHHHHHHH------hC--CceEEEeCcChHHhhcCCC-HHHHHH
Confidence 466778889999999977777765432 22 2344444454433455554 344433
No 220
>PRK12999 pyruvate carboxylase; Reviewed
Probab=66.41 E-value=63 Score=36.52 Aligned_cols=98 Identities=14% Similarity=0.143 Sum_probs=66.9
Q ss_pred HHHHHhCCCCEE-EeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEc----CCCcccCCCcHH---HHHHHhhcCCCceE
Q 021144 174 VLILANSGADLI-AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSK----DGINVVSGDSIL---ECASIADSCEQVVA 245 (317)
Q Consensus 174 i~~l~~~gvD~l-~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~----~~~~l~~G~~l~---~a~~~~~~~~~~~a 245 (317)
++...+.|+|+| +|-.+.+++.++.+++++++.+ .-+-++++.. |..+. -.++. +.++.+.+ .+++.
T Consensus 633 i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g--~~~~~~i~ytg~~~d~~~~--~~~~~~~~~~a~~l~~-~Ga~~ 707 (1146)
T PRK12999 633 VREAAAAGIDVFRIFDSLNWVENMRVAIDAVRETG--KIAEAAICYTGDILDPARA--KYDLDYYVDLAKELEK-AGAHI 707 (1146)
T ss_pred HHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcC--CeEEEEEEEEecCCCCCCC--CCCHHHHHHHHHHHHH-cCCCE
Confidence 555677899998 6667788888889999999876 4445555544 22221 13343 44444544 47777
Q ss_pred EEEcCC----ChhhhHHHHHHHHhhCCCcEEEEeC
Q 021144 246 VGINCT----SPRFIHGLILSVRKVTSKPVIIYPN 276 (317)
Q Consensus 246 iGvNC~----~p~~~~~~l~~l~~~~~~pl~vyPN 276 (317)
|.|-=+ .|..+..+++.+++..+.||.+.-.
T Consensus 708 i~ikDt~G~l~P~~~~~lv~~lk~~~~ipi~~H~H 742 (1146)
T PRK12999 708 LAIKDMAGLLKPAAAYELVSALKEEVDLPIHLHTH 742 (1146)
T ss_pred EEECCccCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 766543 3899999999999988888876654
No 221
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=66.37 E-value=58 Score=31.79 Aligned_cols=118 Identities=14% Similarity=0.165 Sum_probs=70.7
Q ss_pred HHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHH---hCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEE
Q 021144 171 RRRVLILANSGADLIAFETIPNKLEAKAYAELLEE---EGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVG 247 (317)
Q Consensus 171 ~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~---~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiG 247 (317)
..|+..|.++|+|++-+ |+|+.++++++-+..+. .+.+.|++.-+.|+. ++ |...++ . ++.|=
T Consensus 34 v~QI~~L~~aGceivRv-avp~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~--~l--------Al~a~~--~-v~kiR 99 (359)
T PF04551_consen 34 VAQIKRLEEAGCEIVRV-AVPDMEAAEALKEIKKRLRALGSPIPLVADIHFDY--RL--------ALEAIE--A-VDKIR 99 (359)
T ss_dssp HHHHHHHHHCT-SEEEE-EE-SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTC--HH--------HHHHHH--C--SEEE
T ss_pred HHHHHHHHHcCCCEEEE-cCCCHHHHHHHHHHHHhhccCCCCCCeeeecCCCH--HH--------HHHHHH--H-hCeEE
Confidence 35899999999999975 88999998887765554 344699998886642 22 333343 2 66777
Q ss_pred EcCCC------------hhhhHHHHHHHHhhCCCcEEEEeCCCCccccccccccccCCCChhhHHHHHHHHH
Q 021144 248 INCTS------------PRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVVSFSLHFFPLELILNPFA 307 (317)
Q Consensus 248 vNC~~------------p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~w~~~~~~~~~~~~~~~~~w~ 307 (317)
||=.. .+.+..+++..++. +.|+=+=-|+|-.-.. ....|..+|+.+.+.+.+++
T Consensus 100 INPGNi~~~~~~~~g~~~~~~~~vv~~ake~-~ipIRIGvN~GSL~~~----~~~ky~~t~~amvesA~~~~ 166 (359)
T PF04551_consen 100 INPGNIVDEFQEELGSIREKVKEVVEAAKER-GIPIRIGVNSGSLEKD----ILEKYGPTPEAMVESALEHV 166 (359)
T ss_dssp E-TTTSS----SS-SS-HHHHHHHHHHHHHH-T-EEEEEEEGGGS-HH----HHHHHCHHHHHHHHHHHHHH
T ss_pred ECCCcccccccccccchHHHHHHHHHHHHHC-CCCEEEecccccCcHH----HHhhccchHHHHHHHHHHHH
Confidence 77642 35566666665554 6888788888843111 11112345777777666655
No 222
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=66.26 E-value=36 Score=33.99 Aligned_cols=68 Identities=13% Similarity=0.151 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEe---ccCCCHHH-HHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHH
Q 021144 160 AVSLETLKEFHRRRVLILANSGADLIAF---ETIPNKLE-AKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECAS 235 (317)
Q Consensus 160 ~~s~~el~~~h~~qi~~l~~~gvD~l~~---ET~p~~~E-a~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~ 235 (317)
..+.++++..++- .+.+.+|..|++ -.+.+.++ ++++++++++.+.++|+++-+ .|+..++..+
T Consensus 327 ~a~~~~v~~a~~i---i~~d~~vk~iliNIfGGI~~cd~iA~gii~a~~~~~~~~pivvRl---------~Gtn~~~g~~ 394 (422)
T PLN00124 327 NASEQQVVEAFKI---LTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKQVGLKVPLVVRL---------EGTNVDQGKR 394 (422)
T ss_pred CCCHHHHHHHHHH---HhcCCCCcEEEEEecCCccchHHHHHHHHHHHHhcCCCCcEEEEc---------CCCCHHHHHH
Confidence 3578888888862 345788999975 34444443 567888999877789999755 7888998888
Q ss_pred Hhhc
Q 021144 236 IADS 239 (317)
Q Consensus 236 ~~~~ 239 (317)
.+.+
T Consensus 395 ~l~~ 398 (422)
T PLN00124 395 ILKE 398 (422)
T ss_pred HHHh
Confidence 8875
No 223
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=66.05 E-value=75 Score=32.52 Aligned_cols=65 Identities=14% Similarity=0.146 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhCCCCEEEeccCC---CHHHHHHHHHHHHHhCC-CccEEEEEEEcCCCcccCCCcHHHHHHHhh
Q 021144 168 EFHRRRVLILANSGADLIAFETIP---NKLEAKAYAELLEEEGI-TIPAWFSFNSKDGINVVSGDSILECASIAD 238 (317)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~ET~p---~~~Ea~a~~~~~~~~~~-~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~ 238 (317)
++|.+.++.+.+.|+|.|.+--+. ...++..++.++++..+ ++| +++-+.++ .|..+...+..++
T Consensus 155 e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ip--I~~H~Hnt----~GlA~An~laAie 223 (499)
T PRK12330 155 EGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTR--INLHCHST----TGVTLVSLMKAIE 223 (499)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCe--EEEEeCCC----CCcHHHHHHHHHH
Confidence 467778888999999999877443 56778888888887531 355 45655443 4666666666665
No 224
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=65.44 E-value=27 Score=32.52 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=40.1
Q ss_pred HHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEE
Q 021144 177 LANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (317)
Q Consensus 177 l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGv 248 (317)
..+.|+|+|.+.+|+ .++++.+++.+++. +++|+.++ -|-++..+.+.+. .++++|.+
T Consensus 197 A~~~gaD~I~ld~~~-~e~l~~~v~~i~~~-~~i~i~as----------GGIt~~ni~~~a~--~Gad~Isv 254 (269)
T cd01568 197 ALEAGADIIMLDNMS-PEELKEAVKLLKGL-PRVLLEAS----------GGITLENIRAYAE--TGVDVIST 254 (269)
T ss_pred HHHcCCCEEEECCCC-HHHHHHHHHHhccC-CCeEEEEE----------CCCCHHHHHHHHH--cCCCEEEE
Confidence 345799999999986 57778777766643 24665544 3677777777665 47777765
No 225
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=64.99 E-value=40 Score=34.23 Aligned_cols=95 Identities=15% Similarity=0.129 Sum_probs=55.0
Q ss_pred HHhCCCCEEEeccCCCHHHH-------HHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHH---HHHHh-hcCCCceE
Q 021144 177 LANSGADLIAFETIPNKLEA-------KAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILE---CASIA-DSCEQVVA 245 (317)
Q Consensus 177 l~~~gvD~l~~ET~p~~~Ea-------~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~---a~~~~-~~~~~~~a 245 (317)
+...+.|++++|-.-.+-+- -...++++..+ .||++-..++... + .+.+.. ..+.+ +....+.+
T Consensus 313 ~~~~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~--~PVILV~~~~~g~-i--~~~~~~i~G~~~~l~~~~i~i~G 387 (476)
T PRK06278 313 VKNSDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALG--FPVYIVSSCSKSG-I--EGAFVESMAYYSLLKKMGVKVEG 387 (476)
T ss_pred HHhcCCCEEEEECCCCcccccCCCCccccHHHHHHHhC--CCEEEEEcCCCCh-H--HHHHHHHHHHHHHHhcCCCcEEE
Confidence 33347899999987655553 13346677765 8999877553321 0 011211 11223 22235778
Q ss_pred EEEcCCChhhhHHHHHHHHhhCCCcEEEEeC
Q 021144 246 VGINCTSPRFIHGLILSVRKVTSKPVIIYPN 276 (317)
Q Consensus 246 iGvNC~~p~~~~~~l~~l~~~~~~pl~vyPN 276 (317)
|-+|++.+......++.+.+.++.|++=+|-
T Consensus 388 VIlN~v~~~~~~~~~~~~le~~gvpVLG~~~ 418 (476)
T PRK06278 388 IILNKVYNMEIFEKVKKIAENSNINLIGVGK 418 (476)
T ss_pred EEEECCCcHHHHHHHHHHHHhcCCCEEEecc
Confidence 9999996544445556555557889654465
No 226
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=64.90 E-value=1.2e+02 Score=28.23 Aligned_cols=142 Identities=16% Similarity=0.100 Sum_probs=75.3
Q ss_pred ChHHHHHHHHHHHHh-hccccccccccccHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCC
Q 021144 53 SPHLVRKVHLDYLDA-GANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISS 131 (317)
Q Consensus 53 ~Pe~V~~iH~~Yl~A-GAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~ 131 (317)
+.+..++.-+.++++ |++-|..+--..-.. -++.+|-.++++.+++.+. +
T Consensus 19 D~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~-----~Lt~~Er~~~~~~~~~~~~------------------------~ 69 (288)
T cd00954 19 NEDVLRAIVDYLIEKQGVDGLYVNGSTGEGF-----LLSVEERKQIAEIVAEAAK------------------------G 69 (288)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECcCCcCcc-----cCCHHHHHHHHHHHHHHhC------------------------C
Confidence 456777777888899 999765544322222 2455666666665555431 2
Q ss_pred CCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec----cCCCHHHHHHHHHHHHHhC
Q 021144 132 RPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFE----TIPNKLEAKAYAELLEEEG 207 (317)
Q Consensus 132 ~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~E----T~p~~~Ea~a~~~~~~~~~ 207 (317)
+-..|+| +|.. +.++..+ +++...+.|+|.+++= .-++-+|+..-.+.+.+..
T Consensus 70 ~~~viag-v~~~------------------~~~~ai~----~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~ 126 (288)
T cd00954 70 KVTLIAH-VGSL------------------NLKESQE----LAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAA 126 (288)
T ss_pred CCeEEec-cCCC------------------CHHHHHH----HHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 2234555 3321 3344433 4666778999999752 1245566655555544432
Q ss_pred CCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCC
Q 021144 208 ITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTS 252 (317)
Q Consensus 208 ~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~ 252 (317)
+++|+++ ..... .+.-.-+++ .+..+.+. +..+||--++
T Consensus 127 ~~lpi~i-Yn~P~--~tg~~l~~~-~~~~L~~~--pnivgiK~s~ 165 (288)
T cd00954 127 ASLPMII-YHIPA--LTGVNLTLE-QFLELFEI--PNVIGVKFTA 165 (288)
T ss_pred CCCCEEE-EeCcc--ccCCCCCHH-HHHHHhcC--CCEEEEEeCC
Confidence 2589987 33321 111223343 33334333 3466777654
No 227
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=64.48 E-value=1.3e+02 Score=28.41 Aligned_cols=101 Identities=15% Similarity=0.106 Sum_probs=63.6
Q ss_pred HHHHHHhCCCCEEEecc-----------------CCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHH
Q 021144 173 RVLILANSGADLIAFET-----------------IPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECAS 235 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET-----------------~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~ 235 (317)
.++.+.++||..|.+|- +-+.+|...-++++++...+.+++|--. .+..+ .+..++++++
T Consensus 97 ~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiAR--TDa~~-~~~~~~eAi~ 173 (285)
T TIGR02320 97 LVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIAR--VESLI-LGKGMEDALK 173 (285)
T ss_pred HHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEe--ccccc-ccCCHHHHHH
Confidence 57778889999999965 2367888888888776421233333222 12222 2334788887
Q ss_pred Hhhc--CCCceEEEEcC--CChhhhHHHHHHHHhh-CCCcEEEEeC
Q 021144 236 IADS--CEQVVAVGINC--TSPRFIHGLILSVRKV-TSKPVIIYPN 276 (317)
Q Consensus 236 ~~~~--~~~~~aiGvNC--~~p~~~~~~l~~l~~~-~~~pl~vyPN 276 (317)
.++. ..++++|-+-+ .+++.+..+.+.+... .+.|+++.|.
T Consensus 174 Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~~~~ 219 (285)
T TIGR02320 174 RAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVIVPT 219 (285)
T ss_pred HHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEEecC
Confidence 7642 25788888876 2467777887777542 2468877664
No 228
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=64.47 E-value=81 Score=29.62 Aligned_cols=91 Identities=20% Similarity=0.205 Sum_probs=58.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec--cCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHH
Q 021144 156 DYGDAVSLETLKEFHRRRVLILANSGADLIAFE--TIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILEC 233 (317)
Q Consensus 156 ~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~E--T~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a 233 (317)
+||. -|.++++++-.+.++.|.+.+++++++= |.+ ..+++.+|+.- +.||+=.+ .| +..|
T Consensus 43 PYG~-ks~e~I~~~~~~i~~~l~~~~ik~lVIACNTAS-----a~al~~LR~~~-~iPVvGvi---------Pa--ik~A 104 (269)
T COG0796 43 PYGE-KSEEEIRERTLEIVDFLLERGIKALVIACNTAS-----AVALEDLREKF-DIPVVGVI---------PA--IKPA 104 (269)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHHHcCCCEEEEecchHH-----HHHHHHHHHhC-CCCEEEec---------cc--hHHH
Confidence 4554 6889999999999999999899988654 433 24556677765 68888322 22 3334
Q ss_pred HHHhhcCCCceEEEEcCC-ChhhhHHHHHHHHh
Q 021144 234 ASIADSCEQVVAVGINCT-SPRFIHGLILSVRK 265 (317)
Q Consensus 234 ~~~~~~~~~~~aiGvNC~-~p~~~~~~l~~l~~ 265 (317)
++.... ..+..++.++| .-.....+++++..
T Consensus 105 ~~~t~~-~~IgViaT~~Tvks~~y~~~i~~~~~ 136 (269)
T COG0796 105 VALTRN-GRIGVIATPATVKSNAYRDLIARFAP 136 (269)
T ss_pred HHhccC-CeEEEEeccchhccHHHHHHHHHhCC
Confidence 444332 24566777776 44555566665544
No 229
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=64.42 E-value=58 Score=31.86 Aligned_cols=144 Identities=18% Similarity=0.119 Sum_probs=74.3
Q ss_pred ChHHHHHHHHHHHHhhccccccccccccHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCC
Q 021144 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSR 132 (317)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~ 132 (317)
+|+...++-..++++|.|.|.-.-=.++... ++.++-.++.+++++.|.+- +++
T Consensus 144 d~~~la~~~~~l~~gGvD~Ikdde~~ge~~~-----~~~eER~~~v~~av~~a~~~---------------------TG~ 197 (367)
T cd08205 144 SPEELAELAYELALGGIDLIKDDELLADQPY-----APFEERVRACMEAVRRANEE---------------------TGR 197 (367)
T ss_pred CHHHHHHHHHHHHhcCCCeeeccccccCccc-----CCHHHHHHHHHHHHHHHHHh---------------------hCC
Confidence 5778999999999999998853322222111 22234445555555554421 233
Q ss_pred CeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccE
Q 021144 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPA 212 (317)
Q Consensus 133 ~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv 212 (317)
++.+++.+.. +.+|+.+ +++...+.|+|.+++-....-..+ .+.+++.. ++|+
T Consensus 198 ~~~y~~nit~-------------------~~~e~i~----~a~~a~~~Gad~vmv~~~~~g~~~---~~~l~~~~-~lpi 250 (367)
T cd08205 198 KTLYAPNITG-------------------DPDELRR----RADRAVEAGANALLINPNLVGLDA---LRALAEDP-DLPI 250 (367)
T ss_pred cceEEEEcCC-------------------CHHHHHH----HHHHHHHcCCCEEEEecccccccH---HHHHHhcC-CCeE
Confidence 4445544431 2245544 455567789999998876553221 22223322 5888
Q ss_pred EEEEEEcCC--CcccCCCcHHHHHHHhhcCCCceEEEEcC
Q 021144 213 WFSFNSKDG--INVVSGDSILECASIADSCEQVVAVGINC 250 (317)
Q Consensus 213 ~iSf~~~~~--~~l~~G~~l~~a~~~~~~~~~~~aiGvNC 250 (317)
+.-+....- ..-..|.+.. +...+....+++.+-+|-
T Consensus 251 ~~H~a~~ga~~~~~~~g~~~~-~~~kl~RlaGad~~~~~~ 289 (367)
T cd08205 251 MAHPAFAGALSRSPDYGSHFL-LLGKLMRLAGADAVIFPG 289 (367)
T ss_pred EEccCcccccccCCCCcCCHH-HHHHHHHHcCCCccccCC
Confidence 876644110 0011255553 333332234556655554
No 230
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=64.40 E-value=79 Score=30.37 Aligned_cols=106 Identities=15% Similarity=0.129 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhCCCCEEEeccCC----CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCC
Q 021144 166 LKEFHRRRVLILANSGADLIAFETIP----NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCE 241 (317)
Q Consensus 166 l~~~h~~qi~~l~~~gvD~l~~ET~p----~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~ 241 (317)
....-+..++...+.|+.+-+= +.. +. |...-.+.+++..++.|++.++-+..... .+-..+..+++.+. .
T Consensus 68 ~~~in~~La~~a~~~g~~~~~G-s~~~~~~~~-~~~~~~~~vr~~~~~~p~i~nl~~~~~~~-~~~~~~~~~i~~i~--a 142 (333)
T TIGR02151 68 AGKINRNLARAARELGIPMGVG-SQRAALKDP-ETADTFEVVREEAPNGPLIANIGAPQLVE-GGPEEAQEAIDMIE--A 142 (333)
T ss_pred HHHHHHHHHHHHHHcCCCeEEc-CchhhccCh-hhHhHHHHHHHhCCCCcEEeecCchhhcc-ccHHHHHHHHHHhc--C
Confidence 3444555666777788766542 222 22 22223356677555799999886542211 01122444555553 3
Q ss_pred CceEEEEcCCC----h------hhhHHHHHHHHhhCCCcEEEEeC
Q 021144 242 QVVAVGINCTS----P------RFIHGLILSVRKVTSKPVIIYPN 276 (317)
Q Consensus 242 ~~~aiGvNC~~----p------~~~~~~l~~l~~~~~~pl~vyPN 276 (317)
....+++||.. | +.....++.+++..+.|++|.-+
T Consensus 143 dal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~ 187 (333)
T TIGR02151 143 DALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIVKEV 187 (333)
T ss_pred CCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEEEec
Confidence 56778888742 2 12336677778777899999865
No 231
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=64.24 E-value=1.2e+02 Score=27.94 Aligned_cols=67 Identities=18% Similarity=0.152 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhCCCCEEEec-cCC--CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhc
Q 021144 169 FHRRRVLILANSGADLIAFE-TIP--NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS 239 (317)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~E-T~p--~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~ 239 (317)
++.+.++.+.+.|+|.|.+- |+- ...++..+++.+++.-++.++-+.|-+.++ .|..+..++..+..
T Consensus 144 ~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~----~GlA~An~laAi~a 213 (268)
T cd07940 144 FLIEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHND----LGLAVANSLAAVEA 213 (268)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCC----cchHHHHHHHHHHh
Confidence 45556667778899998665 443 577888888888875322126677777665 47777777777753
No 232
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=64.04 E-value=32 Score=32.76 Aligned_cols=63 Identities=11% Similarity=0.153 Sum_probs=45.4
Q ss_pred HHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcC
Q 021144 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (317)
Q Consensus 172 ~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC 250 (317)
+|+...+++|+|.|.+.+|+ .+|++.+++.++. .+.+.. .-|-++..+.++.. .+++.|.+-+
T Consensus 219 eea~ea~~~gaDiI~LDn~s-~e~~~~av~~~~~-----~~~iea--------SGGI~~~ni~~yA~--tGVD~Is~ga 281 (296)
T PRK09016 219 DELDQALKAGADIIMLDNFT-TEQMREAVKRTNG-----RALLEV--------SGNVTLETLREFAE--TGVDFISVGA 281 (296)
T ss_pred HHHHHHHHcCCCEEEeCCCC-hHHHHHHHHhhcC-----CeEEEE--------ECCCCHHHHHHHHh--cCCCEEEeCc
Confidence 34555677999999999998 6899988886542 233333 24677887777765 5889888877
No 233
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=63.85 E-value=32 Score=32.16 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=41.3
Q ss_pred HHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcC
Q 021144 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC 250 (317)
+....+.|+|+|.+..|+ +++++.+++.++. ++|+.++ -|-++..+.+.+. .++++|-+-.
T Consensus 195 a~~A~~~gaDyI~ld~~~-~e~l~~~~~~~~~---~ipi~Ai----------GGI~~~ni~~~a~--~Gvd~Iav~s 255 (268)
T cd01572 195 LKEALEAGADIIMLDNMS-PEELREAVALLKG---RVLLEAS----------GGITLENIRAYAE--TGVDYISVGA 255 (268)
T ss_pred HHHHHHcCCCEEEECCcC-HHHHHHHHHHcCC---CCcEEEE----------CCCCHHHHHHHHH--cCCCEEEEEe
Confidence 444456899999999986 7787777775542 3676654 3667777776665 4667665544
No 234
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=63.58 E-value=74 Score=29.16 Aligned_cols=95 Identities=9% Similarity=-0.057 Sum_probs=57.1
Q ss_pred HHHHHHhCCCCEEEeccC--CCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCc------ccCCCcHHHHHHHhhcCCCce
Q 021144 173 RVLILANSGADLIAFETI--PNKLEAKAYAELLEEEGITIPAWFSFNSKDGIN------VVSGDSILECASIADSCEQVV 244 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~--p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~------l~~G~~l~~a~~~~~~~~~~~ 244 (317)
.++.+.+.|+|-+++-|. .+.+-++.+ .+++ + .+++|+.++++.- -.++.++.+.++.+.+ .++.
T Consensus 87 ~~~~~l~~Ga~rvvigT~a~~~p~~l~~~----~~~~-~-~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~-~g~~ 159 (241)
T PRK14114 87 YAEKLRKLGYRRQIVSSKVLEDPSFLKFL----KEID-V-EPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKE-YGLE 159 (241)
T ss_pred HHHHHHHCCCCEEEECchhhCCHHHHHHH----HHhC-C-CEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHh-cCCC
Confidence 345566689999888764 455444443 2344 3 3788998876421 2245577888888865 4555
Q ss_pred EEEEcCCChh-----hhHHHHHHHHhhCCCcEEEE
Q 021144 245 AVGINCTSPR-----FIHGLILSVRKVTSKPVIIY 274 (317)
Q Consensus 245 aiGvNC~~p~-----~~~~~l~~l~~~~~~pl~vy 274 (317)
.|-++...-+ .=..+++.+.+.++.|+++-
T Consensus 160 ~ii~tdI~rdGt~~G~d~el~~~l~~~~~~pvias 194 (241)
T PRK14114 160 EIVHTEIEKDGTLQEHDFSLTRKIAIEAEVKVFAA 194 (241)
T ss_pred EEEEEeechhhcCCCcCHHHHHHHHHHCCCCEEEE
Confidence 5555543211 11356777777777886543
No 235
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=63.17 E-value=1.1e+02 Score=28.49 Aligned_cols=101 Identities=16% Similarity=0.150 Sum_probs=58.6
Q ss_pred HHHHHhCCCCEEEeccCCCH---------------HHHHHHHHHHHHhCCCccEEEE--EEEcCCCcccCCCcHHHHHHH
Q 021144 174 VLILANSGADLIAFETIPNK---------------LEAKAYAELLEEEGITIPAWFS--FNSKDGINVVSGDSILECASI 236 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET~p~~---------------~Ea~a~~~~~~~~~~~~pv~iS--f~~~~~~~l~~G~~l~~a~~~ 236 (317)
++...+.|+|.|-+-.-.+- +.++.+++.+++.+...-+.++ |.+.+.++. +-.-+.+.++.
T Consensus 79 v~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~-~~~~~~~~~~~ 157 (274)
T cd07938 79 AERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEV-PPERVAEVAER 157 (274)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCC-CHHHHHHHHHH
Confidence 45556788998766543332 2334456667776633333333 445555543 22223344454
Q ss_pred hhcCCCceEEEEcCC----ChhhhHHHHHHHHhhC-CCcEEEEeC
Q 021144 237 ADSCEQVVAVGINCT----SPRFIHGLILSVRKVT-SKPVIIYPN 276 (317)
Q Consensus 237 ~~~~~~~~aiGvNC~----~p~~~~~~l~~l~~~~-~~pl~vyPN 276 (317)
+.+ .+++.|.+-=+ .|..+..+++.+++.. +.|+.+.-.
T Consensus 158 ~~~-~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~H 201 (274)
T cd07938 158 LLD-LGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFH 201 (274)
T ss_pred HHH-cCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 443 46776666543 4899999999998875 467776554
No 236
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=62.87 E-value=43 Score=31.52 Aligned_cols=62 Identities=16% Similarity=0.093 Sum_probs=43.0
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcC
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC 250 (317)
|+...++.|+|+|.+..| +.++++.+++.++ .++|+.+|- |-+++.+.+++. .++++|.+-+
T Consensus 201 ea~eA~~~gaD~I~LD~~-~~e~l~~~v~~~~---~~i~leAsG----------GIt~~ni~~~a~--tGvD~Isvg~ 262 (277)
T PRK05742 201 ELRQALAAGADIVMLDEL-SLDDMREAVRLTA---GRAKLEASG----------GINESTLRVIAE--TGVDYISIGA 262 (277)
T ss_pred HHHHHHHcCCCEEEECCC-CHHHHHHHHHHhC---CCCcEEEEC----------CCCHHHHHHHHH--cCCCEEEECh
Confidence 444455689999999876 5778888877553 246766553 667777766654 5788887776
No 237
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=62.76 E-value=1.4e+02 Score=28.89 Aligned_cols=116 Identities=10% Similarity=0.040 Sum_probs=61.5
Q ss_pred CCCHHH---HHHHHHHHHHHHHhCCCCEEEecc----------CC--CH----------HH---HHHHHHHHHHhCC---
Q 021144 160 AVSLET---LKEFHRRRVLILANSGADLIAFET----------IP--NK----------LE---AKAYAELLEEEGI--- 208 (317)
Q Consensus 160 ~~s~~e---l~~~h~~qi~~l~~~gvD~l~~ET----------~p--~~----------~E---a~a~~~~~~~~~~--- 208 (317)
.+|.+| +.+.|.+-++...++|.|.|=+=- -| +. .. +..+++++++.-.
T Consensus 133 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~ 212 (353)
T cd04735 133 ELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHA 212 (353)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhcccc
Confidence 467665 455677667777789999985432 11 11 11 3345556665421
Q ss_pred CccEEEEEEEcCCCcccCCCcHHHHHHH---hhcCCCceEEEEcCC---Chh-----hhHHHHHHHHhhC--CCcEEEEe
Q 021144 209 TIPAWFSFNSKDGINVVSGDSILECASI---ADSCEQVVAVGINCT---SPR-----FIHGLILSVRKVT--SKPVIIYP 275 (317)
Q Consensus 209 ~~pv~iSf~~~~~~~l~~G~~l~~a~~~---~~~~~~~~aiGvNC~---~p~-----~~~~~l~~l~~~~--~~pl~vyP 275 (317)
..++.|.+.+..+.....|.++++.+.. +.+ .+++.|.|-+. ... .-...++.+++.. ++|+++
T Consensus 213 ~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~-~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~-- 289 (353)
T cd04735 213 DKDFILGYRFSPEEPEEPGIRMEDTLALVDKLAD-KGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIA-- 289 (353)
T ss_pred CCCceEEEEECcccccCCCCCHHHHHHHHHHHHH-cCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEE--
Confidence 0344445544433334467777766544 443 47888877652 111 1123455555554 567654
Q ss_pred CCC
Q 021144 276 NSG 278 (317)
Q Consensus 276 NaG 278 (317)
|+|
T Consensus 290 ~Gg 292 (353)
T cd04735 290 VGS 292 (353)
T ss_pred ECC
Confidence 554
No 238
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=62.62 E-value=1.2e+02 Score=27.55 Aligned_cols=90 Identities=21% Similarity=0.256 Sum_probs=54.7
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCC-ceEEEEcCC
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQ-VVAVGINCT 251 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~-~~aiGvNC~ 251 (317)
-++.+.++|+|.+++=-+| .+|....++.+++.+ +...+-++ ..++.+..-..+....+ +..+++|=+
T Consensus 96 fi~~~~~aG~~giiipDl~-~ee~~~~~~~~~~~g--~~~i~~i~--------P~T~~~~i~~i~~~~~~~vy~~s~~g~ 164 (242)
T cd04724 96 FLRDAKEAGVDGLIIPDLP-PEEAEEFREAAKEYG--LDLIFLVA--------PTTPDERIKKIAELASGFIYYVSRTGV 164 (242)
T ss_pred HHHHHHHCCCcEEEECCCC-HHHHHHHHHHHHHcC--CcEEEEeC--------CCCCHHHHHHHHhhCCCCEEEEeCCCC
Confidence 3566788999999885555 468888888888876 44443332 33444433333331223 444565553
Q ss_pred -C-----hhhhHHHHHHHHhhCCCcEEE
Q 021144 252 -S-----PRFIHGLILSVRKVTSKPVII 273 (317)
Q Consensus 252 -~-----p~~~~~~l~~l~~~~~~pl~v 273 (317)
+ +..+...++.+++..+.|+.+
T Consensus 165 tG~~~~~~~~~~~~i~~lr~~~~~pI~v 192 (242)
T cd04724 165 TGARTELPDDLKELIKRIRKYTDLPIAV 192 (242)
T ss_pred CCCccCCChhHHHHHHHHHhcCCCcEEE
Confidence 2 245667778888777788766
No 239
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=62.57 E-value=1.3e+02 Score=29.31 Aligned_cols=64 Identities=17% Similarity=0.090 Sum_probs=33.5
Q ss_pred HHHHHHhCCCCEEEeccCC----CHH--------HHHHHHHH---HHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHh
Q 021144 173 RVLILANSGADLIAFETIP----NKL--------EAKAYAEL---LEEEGITIPAWFSFNSKDGINVVSGDSILECASIA 237 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p----~~~--------Ea~a~~~~---~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~ 237 (317)
+++.|.++|+|.+-+--=| ... .+-++.++ .++. .+|+|.- .|. ..-.++++.+
T Consensus 162 ~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~--~v~iIAD-----GGi----~~sGDi~KAl 230 (352)
T PF00478_consen 162 GAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDY--GVPIIAD-----GGI----RTSGDIVKAL 230 (352)
T ss_dssp HHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCT--TSEEEEE-----SS-----SSHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhc--cCceeec-----CCc----Ccccceeeee
Confidence 4556888999999877221 111 33344444 3333 4788732 221 2334677776
Q ss_pred hcCCCceEEEEc
Q 021144 238 DSCEQVVAVGIN 249 (317)
Q Consensus 238 ~~~~~~~aiGvN 249 (317)
. .+.++|.+-
T Consensus 231 a--~GAd~VMlG 240 (352)
T PF00478_consen 231 A--AGADAVMLG 240 (352)
T ss_dssp H--TT-SEEEES
T ss_pred e--ecccceeec
Confidence 5 356666653
No 240
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=62.56 E-value=1.1e+02 Score=29.87 Aligned_cols=100 Identities=13% Similarity=0.031 Sum_probs=56.7
Q ss_pred HHHHHhCCCCEEEec-----------cCCCHHHHH----HHHHHHHHhCCCccEEEE--EEEcCCCcccCCCcHHHHHHH
Q 021144 174 VLILANSGADLIAFE-----------TIPNKLEAK----AYAELLEEEGITIPAWFS--FNSKDGINVVSGDSILECASI 236 (317)
Q Consensus 174 i~~l~~~gvD~l~~E-----------T~p~~~Ea~----a~~~~~~~~~~~~pv~iS--f~~~~~~~l~~G~~l~~a~~~ 236 (317)
++..+++|+|.+.+- .=.+.+|+. .+++.+++.+..+-+.+| |.|.+.++. +-.-+.+.++.
T Consensus 127 ie~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~-~~~~l~~~~~~ 205 (347)
T PLN02746 127 FEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPV-PPSKVAYVAKE 205 (347)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCC-CHHHHHHHHHH
Confidence 444556899977555 223445544 366667776633333343 445555553 22334445555
Q ss_pred hhcCCCceEEEEcCC----ChhhhHHHHHHHHhhCCC-cEEEEe
Q 021144 237 ADSCEQVVAVGINCT----SPRFIHGLILSVRKVTSK-PVIIYP 275 (317)
Q Consensus 237 ~~~~~~~~aiGvNC~----~p~~~~~~l~~l~~~~~~-pl~vyP 275 (317)
+.+ .+++-|.+-=+ .|..+..+++.+++..+. ||.+.-
T Consensus 206 ~~~-~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H~ 248 (347)
T PLN02746 206 LYD-MGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHF 248 (347)
T ss_pred HHH-cCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 544 46666555433 489999999999876543 565544
No 241
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=62.52 E-value=88 Score=29.59 Aligned_cols=92 Identities=16% Similarity=0.150 Sum_probs=56.2
Q ss_pred HHHHHHHHhCCCCEEEeccCC-CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEc
Q 021144 171 RRRVLILANSGADLIAFETIP-NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGIN 249 (317)
Q Consensus 171 ~~qi~~l~~~gvD~l~~ET~p-~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvN 249 (317)
..-++.|.++|||+|- ||-- .. +...+..+|+.. +.|++. |=.+++++..... .+++.||.-
T Consensus 77 ~~Ea~~L~eaGvDiID-aT~r~rP--~~~~~~~iK~~~-~~l~MA-----------D~stleEal~a~~--~Gad~I~TT 139 (283)
T cd04727 77 FVEAQILEALGVDMID-ESEVLTP--ADEEHHIDKHKF-KVPFVC-----------GARNLGEALRRIS--EGAAMIRTK 139 (283)
T ss_pred HHHHHHHHHcCCCEEe-ccCCCCc--HHHHHHHHHHHc-CCcEEc-----------cCCCHHHHHHHHH--CCCCEEEec
Confidence 4448889999999995 8763 34 445566666654 577773 3445666666654 245555543
Q ss_pred CCC--hh----------------------------------hhHHHHHHHHhhCCCcEEEEeCCCC
Q 021144 250 CTS--PR----------------------------------FIHGLILSVRKVTSKPVIIYPNSGE 279 (317)
Q Consensus 250 C~~--p~----------------------------------~~~~~l~~l~~~~~~pl~vyPNaG~ 279 (317)
=.+ ++ .=..+|+++.+..+.|++++..+|-
T Consensus 140 l~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI 205 (283)
T cd04727 140 GEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGV 205 (283)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCC
Confidence 200 00 0124566677666789887788874
No 242
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=62.31 E-value=1.2e+02 Score=29.70 Aligned_cols=125 Identities=12% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCEEEeccCCCHHHHHHHHHH-HHHhCCCccEEEEEEEcCCC---cccCCCcHHHHHHHhhcCCCceEE
Q 021144 171 RRRVLILANSGADLIAFETIPNKLEAKAYAEL-LEEEGITIPAWFSFNSKDGI---NVVSGDSILECASIADSCEQVVAV 246 (317)
Q Consensus 171 ~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~-~~~~~~~~pv~iSf~~~~~~---~l~~G~~l~~a~~~~~~~~~~~ai 246 (317)
...++.+.++|+|.++.= +.+++. ......++|+++-++-...- ...+=.-+.++-+.++ .+.+||
T Consensus 94 ~~~i~~a~~~g~dAv~~~--------~G~l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlr--LGAdAV 163 (348)
T PRK09250 94 ENIVKLAIEAGCNAVAST--------LGVLEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALR--LGAVAV 163 (348)
T ss_pred HHHHHHHHhcCCCEEEeC--------HHHHHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHH--CCCCEE
Q ss_pred EEcCC-ChhhhHHHHHHHHhhC------CCcEEE--EeCCCCccccccccccccCCCChhhHHHHHHHHHHccc
Q 021144 247 GINCT-SPRFIHGLILSVRKVT------SKPVII--YPNSGETYNAELKKWVVSFSLHFFPLELILNPFASCRL 311 (317)
Q Consensus 247 GvNC~-~p~~~~~~l~~l~~~~------~~pl~v--yPNaG~~~d~~~~~w~~~~~~~~~~~~~~~~~w~~~~~ 311 (317)
|+.+- +.+.-...|+.+.+.. ..|+++ ||-.+..-+. ..+..+|+..+..+.--.+.|.
T Consensus 164 ~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~------~d~~~~~d~Ia~AaRiaaELGA 231 (348)
T PRK09250 164 GATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKD------GDYHTAADLTGQANHLAATIGA 231 (348)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCc------ccccccHHHHHHHHHHHHHHcC
No 243
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=62.22 E-value=35 Score=26.65 Aligned_cols=45 Identities=18% Similarity=0.218 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhCCCCEEEecc--CCCHHHHHHHHHHHHHhCCCccEEEEE
Q 021144 169 FHRRRVLILANSGADLIAFET--IPNKLEAKAYAELLEEEGITIPAWFSF 216 (317)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~ET--~p~~~Ea~a~~~~~~~~~~~~pv~iSf 216 (317)
.|.+.+..+++.|.+ +++|- ..+++|++.+++++++.+ +++++.|
T Consensus 74 ~h~~~~~~~l~~g~~-v~~EKP~~~~~~~~~~l~~~a~~~~--~~~~Vg~ 120 (120)
T PF01408_consen 74 SHAEIAKKALEAGKH-VLVEKPLALTLEEAEELVEAAKEKG--VKVMVGY 120 (120)
T ss_dssp GHHHHHHHHHHTTSE-EEEESSSSSSHHHHHHHHHHHHHHT--SCEEEE-
T ss_pred chHHHHHHHHHcCCE-EEEEcCCcCCHHHHHHHHHHHHHhC--CEEEEeC
Confidence 477777778888884 44573 457888888888888766 6676643
No 244
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=61.89 E-value=1.6e+02 Score=30.75 Aligned_cols=126 Identities=18% Similarity=0.172 Sum_probs=77.7
Q ss_pred HHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHH---HHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEE
Q 021144 170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELL---EEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAV 246 (317)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~---~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~ai 246 (317)
-.+|+..|.++|+|++-+ |+|+.++++++-... ++.+.++|++.-+-|+. .-|...++. ++.|
T Consensus 47 tv~Qi~~L~~aGceiVRv-tvp~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~----------~~A~~a~~~---vdki 112 (606)
T PRK00694 47 TVRQICALQEWGCDIVRV-TVQGLKEAQACEHIKERLIQQGISIPLVADIHFFP----------QAAMHVADF---VDKV 112 (606)
T ss_pred HHHHHHHHHHcCCCEEEE-cCCCHHHHHhHHHHHHHHhccCCCCCEEeecCCCh----------HHHHHHHHh---cCce
Confidence 345899999999999974 899999998866543 33455799998776633 223332321 4555
Q ss_pred EEcCCC-------------------------hhhhHHHHHHHHhhCCCcEEEEeCCCCccccccccccccCCCChhhHHH
Q 021144 247 GINCTS-------------------------PRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVVSFSLHFFPLEL 301 (317)
Q Consensus 247 GvNC~~-------------------------p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~w~~~~~~~~~~~~~ 301 (317)
=||=.. .+.+.++++..++ .++|+=+=-|.|-.-+. ....|+.+|+.+.+
T Consensus 113 RINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake-~~~~IRIGvN~GSL~~~----i~~~yG~tpegmVe 187 (606)
T PRK00694 113 RINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKR-LGKAMRIGVNHGSLSER----VMQRYGDTIEGMVY 187 (606)
T ss_pred EECCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHH-CCCCEEEecCCcCchHH----HHHHhCCCHHHHHH
Confidence 566542 1344555554444 36788777898854222 12234457888887
Q ss_pred HHHHHH----Hcccccc
Q 021144 302 ILNPFA----SCRLISF 314 (317)
Q Consensus 302 ~~~~w~----~~~~~~~ 314 (317)
.+.+++ +.||-+|
T Consensus 188 SAle~~~i~e~~~f~di 204 (606)
T PRK00694 188 SALEYIEVCEKLDYRDV 204 (606)
T ss_pred HHHHHHHHHHHCCCCcE
Confidence 766655 4555444
No 245
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=60.91 E-value=1.2e+02 Score=27.64 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=14.9
Q ss_pred HHHHHHHHHhCCCCEEEec
Q 021144 170 HRRRVLILANSGADLIAFE 188 (317)
Q Consensus 170 h~~qi~~l~~~gvD~l~~E 188 (317)
..+.++.|.++|||+|=+.
T Consensus 16 ~~~~~~~l~~~Gad~iel~ 34 (242)
T cd04724 16 TLEILKALVEAGADIIELG 34 (242)
T ss_pred HHHHHHHHHHCCCCEEEEC
Confidence 3446778888999999776
No 246
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=60.75 E-value=1.3e+02 Score=27.82 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=69.8
Q ss_pred HHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcC--------------CCcccCCCcHHHHHHHhhcCC
Q 021144 176 ILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKD--------------GINVVSGDSILECASIADSCE 241 (317)
Q Consensus 176 ~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~--------------~~~l~~G~~l~~a~~~~~~~~ 241 (317)
.++.+|+|-+-+.| +-+..-.-|-++.+.++ ...+++++.++. +|+-..|-+.-+-++.+.+ .
T Consensus 91 ~ll~aGADKVSINs-aAv~~p~lI~~~a~~FG-sQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~-~ 167 (256)
T COG0107 91 KLLRAGADKVSINS-AAVKDPELITEAADRFG-SQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEE-L 167 (256)
T ss_pred HHHHcCCCeeeeCh-hHhcChHHHHHHHHHhC-CceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHH-c
Confidence 46669999999887 23444456667777777 456777765532 2344455556666666654 5
Q ss_pred CceEEEEcCCCh-----hhhHHHHHHHHhhCCCcEEEEeCCCCc
Q 021144 242 QVVAVGINCTSP-----RFIHGLILSVRKVTSKPVIIYPNSGET 280 (317)
Q Consensus 242 ~~~aiGvNC~~p-----~~~~~~l~~l~~~~~~pl~vyPNaG~~ 280 (317)
++-=|.+||..- .+=.++++.++...+.|+++---+|.+
T Consensus 168 GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~v~iPvIASGGaG~~ 211 (256)
T COG0107 168 GAGEILLTSMDRDGTKAGYDLELTRAVREAVNIPVIASGGAGKP 211 (256)
T ss_pred CCceEEEeeecccccccCcCHHHHHHHHHhCCCCEEecCCCCcH
Confidence 767788999632 334678899999999999988888854
No 247
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=60.73 E-value=49 Score=29.68 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHhhccccccc
Q 021144 54 PHLVRKVHLDYLDAGANIIITA 75 (317)
Q Consensus 54 Pe~V~~iH~~Yl~AGAdiI~Tn 75 (317)
++.+.+.-+.+.++|||+|-|+
T Consensus 142 ~~~i~~~~~~a~~~GaD~Ik~~ 163 (235)
T cd00958 142 PDLIAYAARIGAELGADIVKTK 163 (235)
T ss_pred HHHHHHHHHHHHHHCCCEEEec
Confidence 5677776667888899988885
No 248
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=60.62 E-value=1.7e+02 Score=28.52 Aligned_cols=81 Identities=12% Similarity=0.012 Sum_probs=41.9
Q ss_pred HHHHHHhCCCC--EEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCc--HHHHHHH-hhcC--CCceE
Q 021144 173 RVLILANSGAD--LIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDS--ILECASI-ADSC--EQVVA 245 (317)
Q Consensus 173 qi~~l~~~gvD--~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~--l~~a~~~-~~~~--~~~~a 245 (317)
.++.+.+.|+| ++.++. .++.|++..+ + ..+.+.-.+++. .|..|++ +.+.+.. ++.. .+...
T Consensus 282 ~l~~l~~~g~~~v~~~~~~-~dl~~ak~~~------g--~~~~i~GNl~p~-~L~~Gt~e~i~~~v~~~l~~~~~~~gfI 351 (378)
T cd03308 282 YLEYLQELPKGKTVGLFEY-GDPKKVKEKL------G--DKKCIAGGFPTT-LLKYGTPEECIDYVKELLDTLAPGGGFI 351 (378)
T ss_pred HHHHHHhcCCCcEEEcCCC-CCHHHHHHHh------C--CCEEEEcCCCCH-HHhcCCHHHHHHHHHHHHHHhCCCCCEE
Confidence 35567778888 677777 5777765332 2 224444445443 5555653 2222222 2221 13357
Q ss_pred EEEcCC-Ch------hhhHHHHHHH
Q 021144 246 VGINCT-SP------RFIHGLILSV 263 (317)
Q Consensus 246 iGvNC~-~p------~~~~~~l~~l 263 (317)
++.-|. .| +.+..+++..
T Consensus 352 l~~gcgi~p~tp~~~eNi~a~v~av 376 (378)
T cd03308 352 FGTDKPIISADDAKPENLIAVIEFV 376 (378)
T ss_pred EeCCCcCCCCCCCChHHHHHHHHHH
Confidence 777884 22 5555555443
No 249
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=60.56 E-value=1.6e+02 Score=28.29 Aligned_cols=73 Identities=15% Similarity=0.033 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhCCCCEEEecc-CC---------CHHHHHHHHHHHHHhCC----CccEEEEEEEcCCCcccCCCcHHHHH
Q 021144 169 FHRRRVLILANSGADLIAFET-IP---------NKLEAKAYAELLEEEGI----TIPAWFSFNSKDGINVVSGDSILECA 234 (317)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~ET-~p---------~~~Ea~a~~~~~~~~~~----~~pv~iSf~~~~~~~l~~G~~l~~a~ 234 (317)
.|...++.+.+ ++|.|-+.- .| +...+..+++++++.-. ++||++-++... +-+.+.+.+
T Consensus 158 d~~~~~~~~~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~-----~~~~~~~ia 231 (344)
T PRK05286 158 DYLICLEKLYP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDL-----SDEELDDIA 231 (344)
T ss_pred HHHHHHHHHHh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCC-----CHHHHHHHH
Confidence 34456666653 699987752 22 33456667777776532 289998886321 111355666
Q ss_pred HHhhcCCCceEEEE
Q 021144 235 SIADSCEQVVAVGI 248 (317)
Q Consensus 235 ~~~~~~~~~~aiGv 248 (317)
+.+.+ .++++|-+
T Consensus 232 ~~l~~-~Gadgi~~ 244 (344)
T PRK05286 232 DLALE-HGIDGVIA 244 (344)
T ss_pred HHHHH-hCCcEEEE
Confidence 66654 46666544
No 250
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=60.11 E-value=7.5 Score=30.05 Aligned_cols=47 Identities=17% Similarity=0.216 Sum_probs=32.1
Q ss_pred ChhhhHHHHHHHHhhCCCc----EEEEeCCCCccccccccccccCCCChhhHHHHHHHHHH-ccc
Q 021144 252 SPRFIHGLILSVRKVTSKP----VIIYPNSGETYNAELKKWVVSFSLHFFPLELILNPFAS-CRL 311 (317)
Q Consensus 252 ~p~~~~~~l~~l~~~~~~p----l~vyPNaG~~~d~~~~~w~~~~~~~~~~~~~~~~~w~~-~~~ 311 (317)
.-+.+..+|..+.+.+.-| ||.||+.|. +.+|+.....+++|.. +|.
T Consensus 29 ~ee~~d~lv~hF~~iteHP~gSDLIfYP~~~~-------------edsPegIv~~vKeWRa~nG~ 80 (85)
T PF01320_consen 29 TEEEHDELVDHFEKITEHPDGSDLIFYPEDGR-------------EDSPEGIVKEVKEWRASNGK 80 (85)
T ss_dssp SCHHHHHHHHHHHHHH--TTTTHHHHS-STTS-------------TSSHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHcCCCCCCCceeeeCCCCC-------------CCCHHHHHHHHHHHHHHcCC
Confidence 4467788888877766555 788887753 2579999999999984 444
No 251
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=59.77 E-value=17 Score=34.48 Aligned_cols=41 Identities=22% Similarity=0.191 Sum_probs=32.2
Q ss_pred HHHHHHHHHhCCCCEEEecc-CCCHHHHHHHHHHHHHhCCCccEE
Q 021144 170 HRRRVLILANSGADLIAFET-IPNKLEAKAYAELLEEEGITIPAW 213 (317)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET-~p~~~Ea~a~~~~~~~~~~~~pv~ 213 (317)
--+|++...++|+|.+++|. ..+.+|++.+++.+. ..+|+.
T Consensus 168 AI~Ra~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~~---~p~pv~ 209 (290)
T TIGR02321 168 AVRRGQAYEEAGADAILIHSRQKTPDEILAFVKSWP---GKVPLV 209 (290)
T ss_pred HHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhcC---CCCCeE
Confidence 33489999999999999997 589999888887543 236775
No 252
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=59.72 E-value=2e+02 Score=29.17 Aligned_cols=103 Identities=12% Similarity=-0.020 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEE-----Ee-ccCCCHHH-HHHHHHHHH----HhCCCccEEEEEEEcCCCcccCCCc
Q 021144 161 VSLETLKEFHRRRVLILANSGADLI-----AF-ETIPNKLE-AKAYAELLE----EEGITIPAWFSFNSKDGINVVSGDS 229 (317)
Q Consensus 161 ~s~~el~~~h~~qi~~l~~~gvD~l-----~~-ET~p~~~E-a~a~~~~~~----~~~~~~pv~iSf~~~~~~~l~~G~~ 229 (317)
++.+++.+ ++..+..+|+|+| +. .++.-++| ++++.++++ +++ .+.+.++.+ +|.+
T Consensus 173 Lsp~~~a~----~~y~~~~GGvD~IKDDE~l~~q~f~p~~~Rv~~~~~a~~~a~~eTG--~~k~y~~Ni-------T~~~ 239 (468)
T PRK04208 173 LSAKNYGR----VVYEALRGGLDFTKDDENLNSQPFNRWRDRFLFVMEAIDKAEAETG--ERKGHYLNV-------TAPT 239 (468)
T ss_pred CCHHHHHH----HHHHHHhcCCceeeCCCCCCCCCCccHHHHHHHHHHHHHHHHHhhC--CcceEEEec-------CCCC
Confidence 46666444 5556777999998 22 22333444 444455544 344 445555654 2333
Q ss_pred HHHHH---HHhhcCCCceEEEEcCC--ChhhhHHHHHHHHhhCCCcEEEEeCCC
Q 021144 230 ILECA---SIADSCEQVVAVGINCT--SPRFIHGLILSVRKVTSKPVIIYPNSG 278 (317)
Q Consensus 230 l~~a~---~~~~~~~~~~aiGvNC~--~p~~~~~~l~~l~~~~~~pl~vyPNaG 278 (317)
..+.. +.+.+ .+..++.||.. +... ...|+..+...+.||...|+.-
T Consensus 240 ~~em~~ra~~~~e-~G~~~~mv~~~~~G~~~-l~~l~~~~~~~~l~IhaHrA~~ 291 (468)
T PRK04208 240 MEEMYKRAEFAKE-LGSPIVMIDVVTAGWTA-LQSLREWCRDNGLALHAHRAMH 291 (468)
T ss_pred HHHHHHHHHHHHH-hCCCEEEEeccccccHH-HHHHHHhhhcCCcEEEecCCcc
Confidence 34433 33333 47788888885 3333 3333333234578888888864
No 253
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=59.64 E-value=51 Score=30.85 Aligned_cols=57 Identities=18% Similarity=0.131 Sum_probs=36.9
Q ss_pred HHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEE
Q 021144 177 LANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAV 246 (317)
Q Consensus 177 l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~ai 246 (317)
..+.|+|.|.+-.|.. .+++.+++.+++..+++|+.+|- |-++..+.+.+. .++++|
T Consensus 199 A~~~gaD~I~ld~~~p-~~l~~~~~~~~~~~~~i~i~AsG----------GI~~~ni~~~~~--~Gvd~I 255 (272)
T cd01573 199 AAEAGADILQLDKFSP-EELAELVPKLRSLAPPVLLAAAG----------GINIENAAAYAA--AGADIL 255 (272)
T ss_pred HHHcCCCEEEECCCCH-HHHHHHHHHHhccCCCceEEEEC----------CCCHHHHHHHHH--cCCcEE
Confidence 3457899998888754 56777777666543356766543 666776666655 366666
No 254
>PRK06498 isocitrate lyase; Provisional
Probab=59.63 E-value=21 Score=36.20 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=28.7
Q ss_pred hCCCCEEEecc-CCCHHHHHHHHHHHHHhCCCcc
Q 021144 179 NSGADLIAFET-IPNKLEAKAYAELLEEEGITIP 211 (317)
Q Consensus 179 ~~gvD~l~~ET-~p~~~Ea~a~~~~~~~~~~~~p 211 (317)
..++|+|++|| -|++.+++..++.+++..+++.
T Consensus 343 apyADLlW~ET~~P~~~qa~~fa~~Ir~~~P~~~ 376 (531)
T PRK06498 343 QNGADLLWIETEKPHVAQIAGMVNRIREVVPNAK 376 (531)
T ss_pred cCcCcEEEecCCCCCHHHHHHHHHHHHHHCCCCe
Confidence 57999999999 8999999999999998765544
No 255
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=59.45 E-value=99 Score=26.72 Aligned_cols=119 Identities=11% Similarity=0.075 Sum_probs=61.9
Q ss_pred HHHhCCCCEEEeccCCC-HHHHHHHHHHHHHhCCCccEEEEEEE----cCCCcccCCCcHHHHHHHhh-----------c
Q 021144 176 ILANSGADLIAFETIPN-KLEAKAYAELLEEEGITIPAWFSFNS----KDGINVVSGDSILECASIAD-----------S 239 (317)
Q Consensus 176 ~l~~~gvD~l~~ET~p~-~~Ea~a~~~~~~~~~~~~pv~iSf~~----~~~~~l~~G~~l~~a~~~~~-----------~ 239 (317)
.|.++.=-+|++----. ..-.+.+.+.+++.+ .||+.++.- .+.+...+.-.+.++...+. +
T Consensus 23 lLk~AKRPvIivG~ga~~~~a~e~l~~laEklg--iPVvtT~~~~~~~~~kgv~~~~~~lg~~g~~~~~p~~e~~~g~g~ 100 (162)
T TIGR00315 23 MIKRAKRPLLIVGPENLEDEEKELIVKFIEKFD--LPVVATADTYRALIEAGIESEEMNLHEITQFLADPSWEGFDGEGN 100 (162)
T ss_pred HHHcCCCcEEEECCCcCcccHHHHHHHHHHHHC--CCEEEcCccccccccCCeecCCCCHHHHHHhccCchhhhccCCCC
Confidence 34445545566553222 222344555555554 999988842 12333333344444444332 1
Q ss_pred CCCceEEEEcCCChhhhHHHHHHHHhhCCCcEEE----EeCCCCccccccccccccCCCChhhHHHHHHHHHH
Q 021144 240 CEQVVAVGINCTSPRFIHGLILSVRKVTSKPVII----YPNSGETYNAELKKWVVSFSLHFFPLELILNPFAS 308 (317)
Q Consensus 240 ~~~~~aiGvNC~~p~~~~~~l~~l~~~~~~pl~v----yPNaG~~~d~~~~~w~~~~~~~~~~~~~~~~~w~~ 308 (317)
..-+..+|+||=--+.+.+.|+..+ +++ -+.+ .||+- |..+ .++.++|.++.++.++
T Consensus 101 ~DlvlfvG~~~y~~~~~ls~lk~f~-~~~-~i~l~~~y~pnA~---------~Sf~-n~~~~~~~~~l~~~~~ 161 (162)
T TIGR00315 101 YDLVLFLGIIYYYLSQMLSSLKHFS-HIV-TIAIDKYYQPNAD---------YSFP-NLSKDEYLDYLRKLLA 161 (162)
T ss_pred cCEEEEeCCcchHHHHHHHHHHhhc-CcE-EEEecCCCCCCCc---------eecc-ccCHHHHHHHHHHHhc
Confidence 2336789999944466677777665 321 1111 56664 3222 2556778887776554
No 256
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=59.45 E-value=1.3e+02 Score=26.63 Aligned_cols=100 Identities=18% Similarity=0.169 Sum_probs=57.9
Q ss_pred HHHHHHHHhCCCCEEEecc----------------CCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHH
Q 021144 171 RRRVLILANSGADLIAFET----------------IPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECA 234 (317)
Q Consensus 171 ~~qi~~l~~~gvD~l~~ET----------------~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~ 234 (317)
.+.++.+.++|+|.|=+-- ..+.+.+..+++.+++.. ..|+.+-+....+. .....+.+
T Consensus 70 ~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~-~~~v~vk~r~~~~~----~~~~~~~~ 144 (231)
T cd02801 70 AEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAV-PIPVTVKIRLGWDD----EEETLELA 144 (231)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhc-CCCEEEEEeeccCC----chHHHHHH
Confidence 3455556668999985531 125666778888887654 35666655432111 12455666
Q ss_pred HHhhcCCCceEEEEcCCCh------hhhHHHHHHHHhhCCCcEEEEeCCC
Q 021144 235 SIADSCEQVVAVGINCTSP------RFIHGLILSVRKVTSKPVIIYPNSG 278 (317)
Q Consensus 235 ~~~~~~~~~~aiGvNC~~p------~~~~~~l~~l~~~~~~pl~vyPNaG 278 (317)
+.+.+ .+++.|-+.+... ..-...++.+++..+.|+++ |+|
T Consensus 145 ~~l~~-~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~--~Gg 191 (231)
T cd02801 145 KALED-AGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIA--NGD 191 (231)
T ss_pred HHHHH-hCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEE--eCC
Confidence 66665 4777776655321 12245567777766777544 665
No 257
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=58.93 E-value=1.6e+02 Score=27.60 Aligned_cols=142 Identities=15% Similarity=0.094 Sum_probs=77.5
Q ss_pred ChHHHHHHHHHHHHhhccccccc-cccccHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCC
Q 021144 53 SPHLVRKVHLDYLDAGANIIITA-SYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISS 131 (317)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~Tn-Ty~as~~~l~~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~ 131 (317)
+.+.+++.-+.++++|+|-|..+ |.+=. .-++.+|-+++++.+++.+. +
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v~GstGE~------~~Lt~eEr~~v~~~~~~~~~------------------------g 73 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFAAGGTGEF------FSLTPAEYEQVVEIAVSTAK------------------------G 73 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCcCc------ccCCHHHHHHHHHHHHHHhC------------------------C
Confidence 45778888889999999976643 43311 13455666777776665431 2
Q ss_pred CCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCC-----CHHHHHHHHHHHHHh
Q 021144 132 RPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIP-----NKLEAKAYAELLEEE 206 (317)
Q Consensus 132 ~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p-----~~~Ea~a~~~~~~~~ 206 (317)
+-..|+| +|. . .++.. ++++...+.|+|.+++ +-| +-+++..-.+.+.+.
T Consensus 74 ~~pvi~g-v~~-~------------------t~~ai----~~a~~a~~~Gadav~~-~pP~y~~~s~~~i~~~f~~v~~a 128 (296)
T TIGR03249 74 KVPVYTG-VGG-N------------------TSDAI----EIARLAEKAGADGYLL-LPPYLINGEQEGLYAHVEAVCES 128 (296)
T ss_pred CCcEEEe-cCc-c------------------HHHHH----HHHHHHHHhCCCEEEE-CCCCCCCCCHHHHHHHHHHHHhc
Confidence 2345665 342 1 12222 2566677799999987 334 334444444444443
Q ss_pred CCCccEEEEEEEcCCCcccCC--CcHHHHHHHhhcCCCceEEEEcCCC--hhhhHHHH
Q 021144 207 GITIPAWFSFNSKDGINVVSG--DSILECASIADSCEQVVAVGINCTS--PRFIHGLI 260 (317)
Q Consensus 207 ~~~~pv~iSf~~~~~~~l~~G--~~l~~a~~~~~~~~~~~aiGvNC~~--p~~~~~~l 260 (317)
. ++|+++= + ..| -+++...+.+++.+ -.+||--++ ...+..++
T Consensus 129 ~-~~pvilY---n-----~~g~~l~~~~~~~La~~~~--nvvgiKds~~d~~~~~~~~ 175 (296)
T TIGR03249 129 T-DLGVIVY---Q-----RDNAVLNADTLERLADRCP--NLVGFKDGIGDMEQMIEIT 175 (296)
T ss_pred c-CCCEEEE---e-----CCCCCCCHHHHHHHHhhCC--CEEEEEeCCCCHHHHHHHH
Confidence 2 5898862 1 134 34444444443233 466666543 45555544
No 258
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=58.73 E-value=1.5e+02 Score=27.40 Aligned_cols=61 Identities=11% Similarity=0.157 Sum_probs=41.1
Q ss_pred HHHHHHHhCCCCEEEec-cCC--CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhc
Q 021144 172 RRVLILANSGADLIAFE-TIP--NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS 239 (317)
Q Consensus 172 ~qi~~l~~~gvD~l~~E-T~p--~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~ 239 (317)
+.++.+.+.|+|-|.+- |+- +..++..++..+++.. |+-++|-+.++ .|..+..++..+..
T Consensus 145 ~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~---~~~i~~H~Hn~----~Gla~an~~~a~~a 208 (262)
T cd07948 145 RVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGVV---SCDIEFHGHND----TGCAIANAYAALEA 208 (262)
T ss_pred HHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhc---CCeEEEEECCC----CChHHHHHHHHHHh
Confidence 34555677899887554 443 5778888888888753 34557777655 47777777777753
No 259
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=58.54 E-value=31 Score=31.46 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhCCCCEEEeccCC---CHHHHHHHHHHHHHhCCCccEEEE
Q 021144 168 EFHRRRVLILANSGADLIAFETIP---NKLEAKAYAELLEEEGITIPAWFS 215 (317)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~ET~p---~~~Ea~a~~~~~~~~~~~~pv~iS 215 (317)
..|.+++...+++|.|++. |..- +.++.+.+++++++.+ .++++.
T Consensus 48 ~~H~e~a~~aL~aGkhVl~-~s~gAlad~e~~~~l~~aA~~~g--~~l~i~ 95 (229)
T TIGR03855 48 EAVKEYAEKILKNGKDLLI-MSVGALADRELRERLREVARSSG--RKVYIP 95 (229)
T ss_pred HHHHHHHHHHHHCCCCEEE-ECCcccCCHHHHHHHHHHHHhcC--CEEEEC
Confidence 4789999999999999998 6542 6788899999998865 677765
No 260
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=58.38 E-value=32 Score=31.30 Aligned_cols=42 Identities=24% Similarity=0.249 Sum_probs=32.8
Q ss_pred HHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEE
Q 021144 171 RRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSF 216 (317)
Q Consensus 171 ~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf 216 (317)
...++.|.+.|+|+|++..|.--.+.+..++- .. ++||+.|=
T Consensus 168 ~~Aa~~L~~~gadlIvLDCmGYt~~~r~~~~~--~~--g~PVlLsr 209 (221)
T PF07302_consen 168 AAAARELAEQGADLIVLDCMGYTQEMRDIVQR--AL--GKPVLLSR 209 (221)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCHHHHHHHHH--Hh--CCCEEeHH
Confidence 34567788899999999999999998887642 23 48998653
No 261
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=58.32 E-value=37 Score=33.18 Aligned_cols=77 Identities=29% Similarity=0.187 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEE-EeccCCC-----HHH-HHHHHHHHHH----hCCCccEEEEEEEcCCCcccCCCc
Q 021144 161 VSLETLKEFHRRRVLILANSGADLI-AFETIPN-----KLE-AKAYAELLEE----EGITIPAWFSFNSKDGINVVSGDS 229 (317)
Q Consensus 161 ~s~~el~~~h~~qi~~l~~~gvD~l-~~ET~p~-----~~E-a~a~~~~~~~----~~~~~pv~iSf~~~~~~~l~~G~~ 229 (317)
++.+++. +++..++++|||+| ..|++.+ .+| ++++.+++++ ++..+++.... ++.+
T Consensus 143 ld~~~la----~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~ni---------t~~~ 209 (367)
T cd08205 143 LSPEELA----ELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNI---------TGDP 209 (367)
T ss_pred CCHHHHH----HHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEc---------CCCH
Confidence 5666544 46777888999998 4454433 233 3344444433 34223333333 2222
Q ss_pred HHHHHHHhh--cCCCceEEEEcCC
Q 021144 230 ILECASIAD--SCEQVVAVGINCT 251 (317)
Q Consensus 230 l~~a~~~~~--~~~~~~aiGvNC~ 251 (317)
.++++..+ ...+++++.+|--
T Consensus 210 -~e~i~~a~~a~~~Gad~vmv~~~ 232 (367)
T cd08205 210 -DELRRRADRAVEAGANALLINPN 232 (367)
T ss_pred -HHHHHHHHHHHHcCCCEEEEecc
Confidence 44444332 1246777777764
No 262
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=57.47 E-value=1.8e+02 Score=27.76 Aligned_cols=78 Identities=21% Similarity=0.148 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhCCCCEEEecc-CCC---------HHHHHHHHHHHHHhC----CCccEEEEEEEcCCCcccCCCcHH
Q 021144 166 LKEFHRRRVLILANSGADLIAFET-IPN---------KLEAKAYAELLEEEG----ITIPAWFSFNSKDGINVVSGDSIL 231 (317)
Q Consensus 166 l~~~h~~qi~~l~~~gvD~l~~ET-~p~---------~~Ea~a~~~~~~~~~----~~~pv~iSf~~~~~~~l~~G~~l~ 231 (317)
..+.|.+.++.+.+ .+|+|-+.. .|+ .+.+..+++++++.- .++|+++-++... +-+.+.
T Consensus 146 ~~~d~~~~~~~~~~-~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~-----~~~~~~ 219 (327)
T cd04738 146 AVEDYVIGVRKLGP-YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDL-----SDEELE 219 (327)
T ss_pred cHHHHHHHHHHHHh-hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCC-----CHHHHH
Confidence 34445556666653 589886653 333 255667777777642 1389998886321 112455
Q ss_pred HHHHHhhcCCCceEEE-EcC
Q 021144 232 ECASIADSCEQVVAVG-INC 250 (317)
Q Consensus 232 ~a~~~~~~~~~~~aiG-vNC 250 (317)
+.++.+.+ .++++|= +|.
T Consensus 220 ~ia~~l~~-aGad~I~~~n~ 238 (327)
T cd04738 220 DIADVALE-HGVDGIIATNT 238 (327)
T ss_pred HHHHHHHH-cCCcEEEEECC
Confidence 66666654 4777765 454
No 263
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=57.45 E-value=1.9e+02 Score=28.18 Aligned_cols=191 Identities=17% Similarity=0.186 Sum_probs=101.1
Q ss_pred ccCCChHHHHHHHHHHHHhhcccccccccc--ccHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 021144 49 CLVSSPHLVRKVHLDYLDAGANIIITASYQ--ATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGS 126 (317)
Q Consensus 49 ~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~--as~~~l~~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~ 126 (317)
+-++.+|.+.++=+.--++|+.++.-..|. .|+.++ .|++ ..+.++-+++++++
T Consensus 109 CsIEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf--~G~g--------~~gl~~L~~~~~e~-------------- 164 (352)
T PRK13396 109 CSVENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAF--QGHG--------ESALELLAAAREAT-------------- 164 (352)
T ss_pred CcccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCccc--CCch--------HHHHHHHHHHHHHc--------------
Confidence 348999999999999999999999977775 344433 2343 23444555555432
Q ss_pred CCCCCCCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHh
Q 021144 127 GRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEE 206 (317)
Q Consensus 127 ~~~~~~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~ 206 (317)
+ ..+.-+ | .+. .+++.+.+. ||++-+-...... ..+++.+.++
T Consensus 165 ----G--l~~~te--v------------------~d~--------~~v~~~~~~-~d~lqIga~~~~n--~~LL~~va~t 207 (352)
T PRK13396 165 ----G--LGIITE--V------------------MDA--------ADLEKIAEV-ADVIQVGARNMQN--FSLLKKVGAQ 207 (352)
T ss_pred ----C--CcEEEe--e------------------CCH--------HHHHHHHhh-CCeEEECcccccC--HHHHHHHHcc
Confidence 1 111111 0 111 234445544 6777655433222 1234444444
Q ss_pred CCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcC-----C-C-h--hhhHHHHHHHHhhCCCcEEEEeCC
Q 021144 207 GITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC-----T-S-P--RFIHGLILSVRKVTSKPVIIYPNS 277 (317)
Q Consensus 207 ~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC-----~-~-p--~~~~~~l~~l~~~~~~pl~vyPNa 277 (317)
+ +||+++= |...+=+.+..+++.+....+...+.+-| . . | ..=...+..+++.+..|+++=|-=
T Consensus 208 ~--kPVllk~-----G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPVi~DpsH 280 (352)
T PRK13396 208 D--KPVLLKR-----GMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPIMIDPSH 280 (352)
T ss_pred C--CeEEEeC-----CCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhhCCCEEECCcc
Confidence 3 7887653 21112223445566665433445677777 2 1 2 112445566666666777666652
Q ss_pred --CC----------------------c-cccccccccc-cCCCChhhHHHHHHHHHH
Q 021144 278 --GE----------------------T-YNAELKKWVV-SFSLHFFPLELILNPFAS 308 (317)
Q Consensus 278 --G~----------------------~-~d~~~~~w~~-~~~~~~~~~~~~~~~w~~ 308 (317)
|. . .++ .+.|.+ ...++|++|.+.+.+..+
T Consensus 281 ~~G~sd~~~~~a~AAva~GAdGliIE~H~~p-d~AlsD~~qsl~p~~~~~l~~~i~~ 336 (352)
T PRK13396 281 GTGKSEYVPSMAMAAIAAGTDSLMIEVHPNP-AKALSDGPQSLTPDRFDRLMQELAV 336 (352)
T ss_pred cCCcHHHHHHHHHHHHhhCCCeEEEEecCCc-ccCCChhhhcCCHHHHHHHHHHHHH
Confidence 21 0 122 234543 235788888888776654
No 264
>PRK15063 isocitrate lyase; Provisional
Probab=57.39 E-value=2.2e+02 Score=28.67 Aligned_cols=128 Identities=13% Similarity=0.089 Sum_probs=75.4
Q ss_pred HHHHHHhCCCCEEEeccC---------------CCHHHHH----HHHHHHHHhCCCccEEEEEEEcCC------------
Q 021144 173 RVLILANSGADLIAFETI---------------PNKLEAK----AYAELLEEEGITIPAWFSFNSKDG------------ 221 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~---------------p~~~Ea~----a~~~~~~~~~~~~pv~iSf~~~~~------------ 221 (317)
.++.++++||-.|-||-. -..+|.. +++.+....+ .|++|--..+..
T Consensus 166 ~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g--~~~vIiARTDA~aa~li~s~~d~r 243 (428)
T PRK15063 166 LMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMG--VPTLVIARTDAEAADLLTSDVDER 243 (428)
T ss_pred HHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcC--CCeEEEEECCcccccccccccccc
Confidence 477889999999999975 1334433 3333333333 565554333221
Q ss_pred -------CcccCC-----CcHHHHHHHhhc-CCCceEEEEcCC--ChhhhHHHHHHHHhhCCCc--EEEEeCCCCccccc
Q 021144 222 -------INVVSG-----DSILECASIADS-CEQVVAVGINCT--SPRFIHGLILSVRKVTSKP--VIIYPNSGETYNAE 284 (317)
Q Consensus 222 -------~~l~~G-----~~l~~a~~~~~~-~~~~~aiGvNC~--~p~~~~~~l~~l~~~~~~p--l~vyPNaG~~~d~~ 284 (317)
.++..| ..+++|+..... ..+.+.|=+-.. .++.+..+.+.++.. .| +++|+.+.
T Consensus 244 D~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~GAD~iw~Et~~~d~ee~~~fa~~v~~~--~P~~~layn~sP------ 315 (428)
T PRK15063 244 DRPFITGERTAEGFYRVKAGIEQAIARGLAYAPYADLIWCETSTPDLEEARRFAEAIHAK--FPGKLLAYNCSP------ 315 (428)
T ss_pred ccccccCCCccccccccccCHHHHHHHHHHHhcCCCEEEeCCCCCCHHHHHHHHHhhccc--CccceeecCCCC------
Confidence 122233 457888876643 136777766542 346666666655432 36 77885442
Q ss_pred cccccccCCCChhhHHHHHHHHHHcccc
Q 021144 285 LKKWVVSFSLHFFPLELILNPFASCRLI 312 (317)
Q Consensus 285 ~~~w~~~~~~~~~~~~~~~~~w~~~~~~ 312 (317)
.-.|... +++++...|..+.-+.|+-
T Consensus 316 sfnW~~~--~~~~~~~~f~~eL~~~Gy~ 341 (428)
T PRK15063 316 SFNWKKN--LDDATIAKFQRELGAMGYK 341 (428)
T ss_pred Ccccccc--cCHHHHHHHHHHHHHcCce
Confidence 2467533 6788899999888888864
No 265
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=57.28 E-value=2e+02 Score=28.26 Aligned_cols=85 Identities=19% Similarity=0.255 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHHHHH----hC--CCCEEEeccCCC-------HHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCC
Q 021144 162 SLETLKEFHRRRVLILA----NS--GADLIAFETIPN-------KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGD 228 (317)
Q Consensus 162 s~~el~~~h~~qi~~l~----~~--gvD~l~~ET~p~-------~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~ 228 (317)
+.++..+.+.+-++.+. +. ||. |++|.+|+ +..+..+++.+++.+ .|=.+.++++-......|.
T Consensus 148 d~~~a~~~~~e~L~~lae~A~~~G~GV~-laLEp~p~~~~~~~ll~T~~~al~li~~v~--~pn~vgl~lDvgH~~~~g~ 224 (382)
T TIGR02631 148 DVRAALDRMREALNLLAAYAEDQGYGLR-FALEPKPNEPRGDILLPTVGHALAFIETLE--RPELFGLNPETGHEQMAGL 224 (382)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCCcE-EEEccCCCCCCcceecCCHHHHHHHHHHcC--CccceeEEEechhHhhcCC
Confidence 45666666666665554 33 354 67798764 223344455556554 4444455554433355788
Q ss_pred cHHHHHHHhhcCCCceEEEEc
Q 021144 229 SILECASIADSCEQVVAVGIN 249 (317)
Q Consensus 229 ~l~~a~~~~~~~~~~~aiGvN 249 (317)
++.+++........+.-|=+|
T Consensus 225 n~~~~i~~~l~~~kl~Hvhln 245 (382)
T TIGR02631 225 NFTHGIAQALWAGKLFHIDLN 245 (382)
T ss_pred CHHHHHHHHHhCCCEEEEecC
Confidence 888888644222334444455
No 266
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=57.24 E-value=1.6e+02 Score=27.05 Aligned_cols=97 Identities=22% Similarity=0.219 Sum_probs=62.8
Q ss_pred HHHHHHHHHhC-CCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCc----HHHHHHHhhcCCCce
Q 021144 170 HRRRVLILANS-GADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDS----ILECASIADSCEQVV 244 (317)
Q Consensus 170 h~~qi~~l~~~-gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~----l~~a~~~~~~~~~~~ 244 (317)
|.+.+..+++. ++|++=+|-...-...+.++...++.+ +++|- |..++|+ +.+....+.. .+++
T Consensus 80 ~i~ll~~la~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~----vI~Sy------H~F~~TP~~~~i~~~l~km~~-~~aD 148 (231)
T COG0710 80 YIELLKKLAELNGPDYIDIELSSPEDDVKEIIKFAKKHG----VIVSY------HDFEKTPPLEEIIERLDKMES-LGAD 148 (231)
T ss_pred HHHHHHHHHhhcCCCEEEEEccCcchhHHHHHhccccCC----EEEEe------ccCCCCCcHHHHHHHHHHHHh-hCCC
Confidence 44456666664 599999997776655555555444422 77776 2335666 5555555554 4668
Q ss_pred EEEEcCC--ChhhhHHHHHHHHhh--CCCcEEEEeCC
Q 021144 245 AVGINCT--SPRFIHGLILSVRKV--TSKPVIIYPNS 277 (317)
Q Consensus 245 aiGvNC~--~p~~~~~~l~~l~~~--~~~pl~vyPNa 277 (317)
.+=|-|. +.+.+..+|+..+.. .++|++..+=+
T Consensus 149 ivKiAvm~~~~~DvL~ll~~~~~~~~~~~p~i~i~MG 185 (231)
T COG0710 149 IVKIAVMPQSKEDVLDLLEATREFKEAEKPVITISMG 185 (231)
T ss_pred eEEEEecCCCHHHHHHHHHHHHhccccCCCEEEEecC
Confidence 8888886 468888888877654 47887655544
No 267
>COG0280 Pta Phosphotransacetylase [Energy production and conversion]
Probab=57.11 E-value=1.9e+02 Score=27.97 Aligned_cols=185 Identities=19% Similarity=0.212 Sum_probs=96.7
Q ss_pred ccCCChHHHHHHHHHHHH-hh-cccccc-ccc------cccH-HHHHhCCCCHHHHHHHH-HHHHHHHHHHHHHHHhhcc
Q 021144 49 CLVSSPHLVRKVHLDYLD-AG-ANIIIT-ASY------QATI-QGFEAKGFSTEEAEALL-RRSVEIACEAREIYYDRCM 117 (317)
Q Consensus 49 ~ll~~Pe~V~~iH~~Yl~-AG-AdiI~T-nTy------~as~-~~l~~~g~~~~~~~~l~-~~av~lAr~A~~~~~~~~~ 117 (317)
.++-+|+.|++.-+.+=. .. ..||-- .++ --.. +..++.|++.+++++++ +....+|-.....
T Consensus 42 ilvg~~~~i~~~~~~~gl~l~~~eiidp~~~~~~~~~y~~~~~e~~k~kG~t~~~a~~~~~~d~~~~a~~mv~~------ 115 (327)
T COG0280 42 ILVGRPEEIEEVAKALGLDLDGIEIINPELDPERFEEYVDRLYELRKRKGVTPEDAQELVREDPTVFAAMMVAL------ 115 (327)
T ss_pred EEEcCHHHHHHHHHHhcccccccEEeCcccCchhHHHHHHHHHHHhccCCCCHHHHHHHhccCcHHHHHHHHHc------
Confidence 356778887776665422 22 244443 333 1111 22345588888888877 7788887766632
Q ss_pred CCCCCCCCCCCCCCCCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HhCCCCEE-----------
Q 021144 118 KDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLIL-ANSGADLI----------- 185 (317)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l-~~~gvD~l----------- 185 (317)
...+.+|.|.++.|...+.+ -.+.+ ...|+-.+
T Consensus 116 ------------g~aD~~v~G~~~tt~~~lr~-----------------------~lqii~~~pG~~~~s~v~im~~~~~ 160 (327)
T COG0280 116 ------------GEADGLVSGAVHTTADTLRP-----------------------ALQIIGTRPGVSLVSSVFIMLLPDG 160 (327)
T ss_pred ------------CCCCEEEecCccCHHHHHHH-----------------------HHHHhCCCCCCeeEEEEEEEEeCCc
Confidence 23478999998887654321 11111 11222111
Q ss_pred -------EeccCCCHHHHHHHHH----HHHHhCC-CccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCCh
Q 021144 186 -------AFETIPNKLEAKAYAE----LLEEEGI-TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSP 253 (317)
Q Consensus 186 -------~~ET~p~~~Ea~a~~~----~~~~~~~-~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~p 253 (317)
.+--.|+.+|+..|.. .++..+. .+-.++|++-...+.-.+-..+.++.+.+++ ..+. .+..-+|
T Consensus 161 ~l~~~D~avn~~PtaeeladIa~~sa~~a~~fgi~PkVAlLS~St~gs~~~~~~~kv~ea~~i~~~-~~~~--dl~vDGe 237 (327)
T COG0280 161 TLFFADCAVNPDPTAEELADIAENAAETARRFGIEPKVALLSYSTFGSGKGPSTDKVREATKILRE-RAPP--DLEVDGE 237 (327)
T ss_pred eEEEEecccCCCCCHHHHHHHHHHHHHHHHHhCCCCceEEEEeecCCCCCCccHHHHHHHHHHHHh-cCCc--cceeccC
Confidence 2345688888776543 3455552 2346777765444432233334455555554 3432 2334466
Q ss_pred hhhHHHHH-HHHhh--C------CCcEEEEeCC
Q 021144 254 RFIHGLIL-SVRKV--T------SKPVIIYPNS 277 (317)
Q Consensus 254 ~~~~~~l~-~l~~~--~------~~pl~vyPNa 277 (317)
-....++. .+++. . +--+.|.||-
T Consensus 238 lq~DaA~~~~va~~k~p~s~vaG~ANvlVfP~L 270 (327)
T COG0280 238 LQFDAALVEKVAAKKAPDSPLAGSANVLVFPDL 270 (327)
T ss_pred cchhhhcCHHHHHhhCCCCCcCCCCCEEEcCCc
Confidence 55555443 33332 1 1238889984
No 268
>PRK08005 epimerase; Validated
Probab=57.05 E-value=1.4e+02 Score=26.84 Aligned_cols=80 Identities=16% Similarity=0.179 Sum_probs=49.9
Q ss_pred HHHHHHhCCCCEEEe--ccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcC
Q 021144 173 RVLILANSGADLIAF--ETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (317)
Q Consensus 173 qi~~l~~~gvD~l~~--ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC 250 (317)
.++.|.++|+|.|.| |+.+++ ..+++.+|+.+ ..+.+++. .+|+++.....+.....+....+|=
T Consensus 73 ~i~~~~~~gad~It~H~Ea~~~~---~~~l~~Ik~~G--~k~GlAln--------P~Tp~~~i~~~l~~vD~VlvMsV~P 139 (210)
T PRK08005 73 WLPWLAAIRPGWIFIHAESVQNP---SEILADIRAIG--AKAGLALN--------PATPLLPYRYLALQLDALMIMTSEP 139 (210)
T ss_pred HHHHHHHhCCCEEEEcccCccCH---HHHHHHHHHcC--CcEEEEEC--------CCCCHHHHHHHHHhcCEEEEEEecC
Confidence 356788899999865 765554 45667788876 66666663 4678877766665433444555554
Q ss_pred C--ChhhhHHHHHHHHh
Q 021144 251 T--SPRFIHGLILSVRK 265 (317)
Q Consensus 251 ~--~p~~~~~~l~~l~~ 265 (317)
. +-..+...++++++
T Consensus 140 Gf~GQ~f~~~~~~KI~~ 156 (210)
T PRK08005 140 DGRGQQFIAAMCEKVSQ 156 (210)
T ss_pred CCccceecHHHHHHHHH
Confidence 3 33456666665554
No 269
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=56.98 E-value=1.8e+02 Score=28.08 Aligned_cols=94 Identities=13% Similarity=0.020 Sum_probs=57.7
Q ss_pred HHHHHhCCCCEEEeccC-CCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHH---HHHHhhcCCCceEEEEc
Q 021144 174 VLILANSGADLIAFETI-PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILE---CASIADSCEQVVAVGIN 249 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET~-p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~---a~~~~~~~~~~~aiGvN 249 (317)
++...+.|+|.+-+-|- ...+.++..++.+++.+ ..+.+.+.. . ...+.+. .++.+.+ .+++.|.+-
T Consensus 93 l~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G--~~v~~~l~~--s----~~~~~e~l~~~a~~~~~-~Ga~~i~i~ 163 (333)
T TIGR03217 93 LKAAYDAGARTVRVATHCTEADVSEQHIGMARELG--MDTVGFLMM--S----HMTPPEKLAEQAKLMES-YGADCVYIV 163 (333)
T ss_pred HHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcC--CeEEEEEEc--c----cCCCHHHHHHHHHHHHh-cCCCEEEEc
Confidence 45566789999876653 33455666777778766 445444422 1 1234444 4444443 466666554
Q ss_pred CC----ChhhhHHHHHHHHhhCC--CcEEEEeC
Q 021144 250 CT----SPRFIHGLILSVRKVTS--KPVIIYPN 276 (317)
Q Consensus 250 C~----~p~~~~~~l~~l~~~~~--~pl~vyPN 276 (317)
=+ .|+.+..+++.+++..+ .|+.+...
T Consensus 164 DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~H 196 (333)
T TIGR03217 164 DSAGAMLPDDVRDRVRALKAVLKPETQVGFHAH 196 (333)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeC
Confidence 33 38999999999988765 67776553
No 270
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=56.84 E-value=1.4e+02 Score=29.56 Aligned_cols=91 Identities=14% Similarity=0.174 Sum_probs=53.2
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEE-EEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCC
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFS-FNSKDGINVVSGDSILECASIADSCEQVVAVGINCT 251 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iS-f~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~ 251 (317)
+++.+.+.|+|.+.+-..++......+++.+++.+ .++.+- +++ .++++.+.... + .+++.|++.-.
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G--~~~~~g~~s~--------~t~~e~~~~a~-~-~GaD~I~~~pg 140 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLADDSTIEDAVRAARKYG--VRLMADLINV--------PDPVKRAVELE-E-LGVDYINVHVG 140 (430)
T ss_pred HHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcC--CEEEEEecCC--------CCHHHHHHHHH-h-cCCCEEEEEec
Confidence 57778889999998644444444566777788765 666653 222 23344433333 2 36777776542
Q ss_pred C-----hhhhHHHHHHHHhhCCCcEEEEe
Q 021144 252 S-----PRFIHGLILSVRKVTSKPVIIYP 275 (317)
Q Consensus 252 ~-----p~~~~~~l~~l~~~~~~pl~vyP 275 (317)
. +......|+++++..+.|+++-.
T Consensus 141 ~~~~~~~~~~~~~l~~l~~~~~iPI~a~G 169 (430)
T PRK07028 141 IDQQMLGKDPLELLKEVSEEVSIPIAVAG 169 (430)
T ss_pred cchhhcCCChHHHHHHHHhhCCCcEEEEC
Confidence 1 12233567777766667876543
No 271
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=56.48 E-value=1.3e+02 Score=25.99 Aligned_cols=50 Identities=20% Similarity=0.198 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCCEEEec-----cCCCHHHHHHHHHHHHHhCCCccEEEEEEEc
Q 021144 169 FHRRRVLILANSGADLIAFE-----TIPNKLEAKAYAELLEEEGITIPAWFSFNSK 219 (317)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~E-----T~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~ 219 (317)
...+.++.+.++|+|.|=+= .++++..-..+++.+++.. +.|+.+-+.+.
T Consensus 12 ~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~-~~~v~v~lm~~ 66 (210)
T TIGR01163 12 RLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYT-DLPIDVHLMVE 66 (210)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcC-CCcEEEEeeeC
Confidence 45567888999999998773 3344443334444555432 46765544443
No 272
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=56.37 E-value=1.2e+02 Score=27.99 Aligned_cols=78 Identities=18% Similarity=0.213 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCC----ChhhhHHHHHHHHhhCC
Q 021144 193 KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT----SPRFIHGLILSVRKVTS 268 (317)
Q Consensus 193 ~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~----~p~~~~~~l~~l~~~~~ 268 (317)
++.++.+++.+++.+ . -++|++.+.++. +=.-+.+.++.+.+ .+++.|.+-=+ .|..+..+++.+++..+
T Consensus 113 ~~~~~~~i~~a~~~G--~--~v~~~~~~~~~~-~~~~~~~~~~~~~~-~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~ 186 (268)
T cd07940 113 LERAVEAVEYAKSHG--L--DVEFSAEDATRT-DLDFLIEVVEAAIE-AGATTINIPDTVGYLTPEEFGELIKKLKENVP 186 (268)
T ss_pred HHHHHHHHHHHHHcC--C--eEEEeeecCCCC-CHHHHHHHHHHHHH-cCCCEEEECCCCCCCCHHHHHHHHHHHHHhCC
Confidence 345556666677665 3 355777665542 22223344444444 46777666544 48999999999998765
Q ss_pred ---CcEEEEeC
Q 021144 269 ---KPVIIYPN 276 (317)
Q Consensus 269 ---~pl~vyPN 276 (317)
.||.+...
T Consensus 187 ~~~i~l~~H~H 197 (268)
T cd07940 187 NIKVPISVHCH 197 (268)
T ss_pred CCceeEEEEec
Confidence 67766554
No 273
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=56.00 E-value=1.7e+02 Score=27.02 Aligned_cols=72 Identities=13% Similarity=0.127 Sum_probs=42.7
Q ss_pred HHHHHHHHHhCCCCEEEecc-CC----------CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhh
Q 021144 170 HRRRVLILANSGADLIAFET-IP----------NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (317)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET-~p----------~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~ 238 (317)
+.+.++.+.+.|+|.|-+-. .| +.+.+..+++.+++.. ++|+++-+.... +-+.+.+.++.+.
T Consensus 113 ~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~-----~~~~~~~~a~~l~ 186 (289)
T cd02810 113 YVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYF-----DLEDIVELAKAAE 186 (289)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCC-----CHHHHHHHHHHHH
Confidence 34456677778999886531 22 4456677788888754 689887775321 1112344555555
Q ss_pred cCCCceEEEE
Q 021144 239 SCEQVVAVGI 248 (317)
Q Consensus 239 ~~~~~~aiGv 248 (317)
+ .++++|-+
T Consensus 187 ~-~Gad~i~~ 195 (289)
T cd02810 187 R-AGADGLTA 195 (289)
T ss_pred H-cCCCEEEE
Confidence 4 46776654
No 274
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=55.86 E-value=1.9e+02 Score=27.57 Aligned_cols=113 Identities=14% Similarity=0.172 Sum_probs=67.6
Q ss_pred CCCCHHH---HHHHHHHHHHHHHhCCCCEEEecc------------CCC-------------HHHHHHHHHHHHHh-CCC
Q 021144 159 DAVSLET---LKEFHRRRVLILANSGADLIAFET------------IPN-------------KLEAKAYAELLEEE-GIT 209 (317)
Q Consensus 159 ~~~s~~e---l~~~h~~qi~~l~~~gvD~l~~ET------------~p~-------------~~Ea~a~~~~~~~~-~~~ 209 (317)
..++.+| +.+.|.+.++...++|.|.+=+-. ..+ .+.+..+++++++. +.+
T Consensus 142 ~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d 221 (336)
T cd02932 142 RELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPED 221 (336)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCC
Confidence 3477666 455677777777889999995542 111 23345667777764 446
Q ss_pred ccEEEEEEEcCCCcccCCCcHHHHHHHhhc--CCCceEEEEc---CC-------ChhhhHHHHHHHHhhCCCcEEE
Q 021144 210 IPAWFSFNSKDGINVVSGDSILECASIADS--CEQVVAVGIN---CT-------SPRFIHGLILSVRKVTSKPVII 273 (317)
Q Consensus 210 ~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~--~~~~~aiGvN---C~-------~p~~~~~~l~~l~~~~~~pl~v 273 (317)
.|+++-++..+ ....|.+++++++.+.. ..+++.|-+- ++ .+......++.+++.++.|+++
T Consensus 222 ~~v~vri~~~~--~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~ 295 (336)
T cd02932 222 KPLFVRISATD--WVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIA 295 (336)
T ss_pred ceEEEEEcccc--cCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEE
Confidence 78887776533 23356677777654421 2466666542 11 1222346677888888889765
No 275
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=55.85 E-value=2e+02 Score=27.90 Aligned_cols=63 Identities=16% Similarity=0.166 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhCCCCEEEe-ccCC--CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhh
Q 021144 169 FHRRRVLILANSGADLIAF-ETIP--NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (317)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~-ET~p--~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~ 238 (317)
++.+.++.+.+.|+|-|.+ -|+- ...++..+++.+++. .|+-+.|-+.++ .|..+..++..+.
T Consensus 142 ~l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~---~~~~l~~H~Hnd----~GlA~AN~laA~~ 207 (363)
T TIGR02090 142 FLIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKEN---VKLPISVHCHND----FGLATANSIAGVK 207 (363)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcc---cCceEEEEecCC----CChHHHHHHHHHH
Confidence 4444566677889998754 4544 467777888888763 345567777665 3555555555554
No 276
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=55.70 E-value=1.7e+02 Score=26.91 Aligned_cols=150 Identities=17% Similarity=0.133 Sum_probs=80.1
Q ss_pred ChHHHHHHHHHHHHhhccccccccccccHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCC
Q 021144 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSR 132 (317)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~ 132 (317)
+.+.+++.-+.+++.|++-|..+--..-.. .++.+|-.++++.+++.+. ++
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~GstGE~~-----~ls~~Er~~l~~~~~~~~~------------------------~~ 66 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVLGTTGEAP-----TLTDEERKEVIEAVVEAVA------------------------GR 66 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcccc-----cCCHHHHHHHHHHHHHHhC------------------------CC
Confidence 456777777778888999776443222111 3455666666665554431 12
Q ss_pred CeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccC----CCHHHHHHHHHHHHHhCC
Q 021144 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETI----PNKLEAKAYAELLEEEGI 208 (317)
Q Consensus 133 ~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~----p~~~Ea~a~~~~~~~~~~ 208 (317)
-..|+| +|.. +.++.. ++++...+.|+|.+++-.= ++-+++..-.+.+.+. .
T Consensus 67 ~~vi~g-v~~~------------------~~~~~i----~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~-~ 122 (281)
T cd00408 67 VPVIAG-VGAN------------------STREAI----ELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADA-S 122 (281)
T ss_pred CeEEEe-cCCc------------------cHHHHH----HHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhc-C
Confidence 334555 3321 333333 3566778899999987531 2455655555555544 3
Q ss_pred CccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCCh--hhhHHHHH
Q 021144 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSP--RFIHGLIL 261 (317)
Q Consensus 209 ~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~p--~~~~~~l~ 261 (317)
++|+++--. . ..+-..-+++...+ +.+ .+..+|+-.+++ ..+..+++
T Consensus 123 ~~pi~iYn~-P--~~tg~~l~~~~~~~-L~~--~~~v~giK~s~~d~~~~~~~~~ 171 (281)
T cd00408 123 DLPVILYNI-P--GRTGVDLSPETIAR-LAE--HPNIVGIKDSSGDLDRLTRLIA 171 (281)
T ss_pred CCCEEEEEC-c--cccCCCCCHHHHHH-Hhc--CCCEEEEEeCCCCHHHHHHHHH
Confidence 689986532 1 11112234443333 433 345677777653 44444433
No 277
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=55.68 E-value=1.9e+02 Score=27.83 Aligned_cols=93 Identities=12% Similarity=0.025 Sum_probs=57.4
Q ss_pred HHHHHhCCCCEEEeccC-CCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHH---HHHhhcCCCceEEEEc
Q 021144 174 VLILANSGADLIAFETI-PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILEC---ASIADSCEQVVAVGIN 249 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET~-p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a---~~~~~~~~~~~aiGvN 249 (317)
++...+.|+|.|-+-|- ...+.++..++.+++.+ ..+.+.+. +. ...+.+.. ++.+.+ .+++.|.+-
T Consensus 94 l~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G--~~v~~~l~--~a----~~~~~e~l~~~a~~~~~-~Ga~~i~i~ 164 (337)
T PRK08195 94 LKMAYDAGVRVVRVATHCTEADVSEQHIGLARELG--MDTVGFLM--MS----HMAPPEKLAEQAKLMES-YGAQCVYVV 164 (337)
T ss_pred HHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCC--CeEEEEEE--ec----cCCCHHHHHHHHHHHHh-CCCCEEEeC
Confidence 45566789999876653 33455566677777766 45554443 22 22344444 444443 466766554
Q ss_pred CC----ChhhhHHHHHHHHhhC--CCcEEEEe
Q 021144 250 CT----SPRFIHGLILSVRKVT--SKPVIIYP 275 (317)
Q Consensus 250 C~----~p~~~~~~l~~l~~~~--~~pl~vyP 275 (317)
=+ .|+.+..+++.+++.. +.|+.+.-
T Consensus 165 DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~ 196 (337)
T PRK08195 165 DSAGALLPEDVRDRVRALRAALKPDTQVGFHG 196 (337)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 33 3899999999998876 57776654
No 278
>PTZ00344 pyridoxal kinase; Provisional
Probab=55.56 E-value=90 Score=29.17 Aligned_cols=79 Identities=9% Similarity=-0.034 Sum_probs=46.5
Q ss_pred CCCCCHHHHHHHHHHHHHHH-HhCCCCEEEeccCCCHHHHHHHHHHHHHh---CCCccEEEEEEEcCCCcccCCCcHHHH
Q 021144 158 GDAVSLETLKEFHRRRVLIL-ANSGADLIAFETIPNKLEAKAYAELLEEE---GITIPAWFSFNSKDGINVVSGDSILEC 233 (317)
Q Consensus 158 ~~~~s~~el~~~h~~qi~~l-~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~---~~~~pv~iSf~~~~~~~l~~G~~l~~a 233 (317)
+..++.+++.++.+. ++.+ ....+|+++.--+|+.+-+..+.+.+++. +++.++++--.+.+.+++-.+..+.++
T Consensus 54 g~~i~~~~~~~~l~~-l~~~~~~~~~~~v~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~ 132 (296)
T PTZ00344 54 GHRLDLNELITLMDG-LRANNLLSDYTYVLTGYINSADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDA 132 (296)
T ss_pred CeeCCHHHHHHHHHH-HHhcCCcccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHH
Confidence 344676665554432 2221 23467999999999988888888888643 211234433223445565566666666
Q ss_pred HHHh
Q 021144 234 ASIA 237 (317)
Q Consensus 234 ~~~~ 237 (317)
+..+
T Consensus 133 ~~~l 136 (296)
T PTZ00344 133 YREL 136 (296)
T ss_pred HHHH
Confidence 6543
No 279
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=55.44 E-value=1.9e+02 Score=27.39 Aligned_cols=88 Identities=14% Similarity=-0.070 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEe-cc----CCCH---HHHH----HHHHHHHHhCCCccEEEEEEEcCC--CcccCCC
Q 021144 163 LETLKEFHRRRVLILANSGADLIAF-ET----IPNK---LEAK----AYAELLEEEGITIPAWFSFNSKDG--INVVSGD 228 (317)
Q Consensus 163 ~~el~~~h~~qi~~l~~~gvD~l~~-ET----~p~~---~Ea~----a~~~~~~~~~~~~pv~iSf~~~~~--~~l~~G~ 228 (317)
.+++.+.+++.++.|.++|++.|-+ |. +.+. +++. .+.+++.+.+.+.++.+..+..+. .+..+|
T Consensus 150 ~~~la~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~lHiC~G~~~~~~~~~~- 228 (332)
T cd03311 150 AMDLALALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRPDDTQIHTHICYGNFRSTWAAEG- 228 (332)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCCCcccccccC-
Confidence 3567778999999999999997744 32 2211 1222 233334432334566655543321 123333
Q ss_pred cHHHHHHHhhcCCCceEEEEcCCC
Q 021144 229 SILECASIADSCEQVVAVGINCTS 252 (317)
Q Consensus 229 ~l~~a~~~~~~~~~~~aiGvNC~~ 252 (317)
+...++..+.. .+++++++-...
T Consensus 229 ~y~~i~~~l~~-~~vd~~~le~~~ 251 (332)
T cd03311 229 GYEPIAEYIFE-LDVDVFFLEYDN 251 (332)
T ss_pred cHHHHHHHHHh-CCCCEEEEEEcC
Confidence 34555665554 347777777764
No 280
>PF06187 DUF993: Protein of unknown function (DUF993); InterPro: IPR009334 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 4DNH_A.
Probab=55.36 E-value=65 Score=31.29 Aligned_cols=91 Identities=20% Similarity=0.267 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHH
Q 021144 88 GFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLK 167 (317)
Q Consensus 88 g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~ 167 (317)
|++-..+.||++++...|+.. ...+++| +|- +.|.++ +..+.+++.
T Consensus 86 GLDW~~a~ELIrRs~aeA~~~-----------------------g~~ia~G-aGT--D~L~~~--------~~~sld~V~ 131 (382)
T PF06187_consen 86 GLDWAAARELIRRSAAEARAV-----------------------GARIACG-AGT--DQLDPA--------PAASLDDVI 131 (382)
T ss_dssp TB-HHHHHHHHHHHHHHHHTS-----------------------S--EEEE-E----TTS-----------TT--HHHHH
T ss_pred CCChHHHHHHHHHHHHHHHhc-----------------------CCcEEee-cCc--CCCCCC--------CCCCHHHHH
Confidence 455456788999988877632 1123444 331 223211 125899999
Q ss_pred HHHHHHHHHHHhCCCCEEEeccCCCHHHHHHH----------HHHHHHhCCCccEEEEEE
Q 021144 168 EFHRRRVLILANSGADLIAFETIPNKLEAKAY----------AELLEEEGITIPAWFSFN 217 (317)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~----------~~~~~~~~~~~pv~iSf~ 217 (317)
..|++|++...+.|...|+.- |-.=++++ -+++++. +.||++..-
T Consensus 132 ~AY~eQ~~~ve~~Gg~~ILMA---SRaLA~~A~~p~DY~~VY~~lL~q~--~~PVILHWL 186 (382)
T PF06187_consen 132 AAYEEQLEAVEAAGGRVILMA---SRALAAVARSPDDYLRVYDRLLSQA--DEPVILHWL 186 (382)
T ss_dssp HHHHHHHHHHHHTT--EEE------HHHHHH--SHHHHHHHHHHHHHH---SS-EEEEEE
T ss_pred HHHHHHHHHHHHcCCeEEEee---hHHHHHhhCCHHHHHHHHHHHHHHc--CCCEEEEec
Confidence 999999999999999999843 32222221 1334443 489998773
No 281
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=55.34 E-value=2e+02 Score=27.67 Aligned_cols=113 Identities=15% Similarity=0.088 Sum_probs=63.5
Q ss_pred CCCCHHHHH---HHHHHHHHHHHhCCCCEEEecc----------CC-----------CH----HHHHHHHHHHHHhCCCc
Q 021144 159 DAVSLETLK---EFHRRRVLILANSGADLIAFET----------IP-----------NK----LEAKAYAELLEEEGITI 210 (317)
Q Consensus 159 ~~~s~~el~---~~h~~qi~~l~~~gvD~l~~ET----------~p-----------~~----~Ea~a~~~~~~~~~~~~ 210 (317)
..+|.+|+. +.|..-++...++|.|.+=+-. -| ++ +-+..+++++++.- +.
T Consensus 129 ~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~v-g~ 207 (343)
T cd04734 129 KAMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAV-GP 207 (343)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHc-CC
Confidence 347776654 4566556666779999984443 11 11 22335666777652 24
Q ss_pred cEEEEEEEcCCCcccCCCcHHHHHHHh---hcCCC-ceEEEEcCCC-----------------hhhhHHHHHHHHhhCCC
Q 021144 211 PAWFSFNSKDGINVVSGDSILECASIA---DSCEQ-VVAVGINCTS-----------------PRFIHGLILSVRKVTSK 269 (317)
Q Consensus 211 pv~iSf~~~~~~~l~~G~~l~~a~~~~---~~~~~-~~aiGvNC~~-----------------p~~~~~~l~~l~~~~~~ 269 (317)
++.+.+.+..+.....|.++++.+..+ ++ .+ ++.|=|.+.. +.....+++.+++..+.
T Consensus 208 ~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~-~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~i 286 (343)
T cd04734 208 DFIVGIRISGDEDTEGGLSPDEALEIAARLAA-EGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDL 286 (343)
T ss_pred CCeEEEEeehhhccCCCCCHHHHHHHHHHHHh-cCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCC
Confidence 444444443333345678887766544 33 34 6777664321 11224566777777788
Q ss_pred cEEE
Q 021144 270 PVII 273 (317)
Q Consensus 270 pl~v 273 (317)
|+++
T Consensus 287 pvi~ 290 (343)
T cd04734 287 PVFH 290 (343)
T ss_pred CEEe
Confidence 8655
No 282
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=54.76 E-value=1.4e+02 Score=29.07 Aligned_cols=97 Identities=18% Similarity=0.209 Sum_probs=55.1
Q ss_pred HHHHHhCCCCEEEec-cCCC--------------HHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhh
Q 021144 174 VLILANSGADLIAFE-TIPN--------------KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (317)
Q Consensus 174 i~~l~~~gvD~l~~E-T~p~--------------~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~ 238 (317)
++...++|+|.+-+- ..++ ++.+..+++.+++.+ .. +.|++.+..+. +-.-+.++++.+.
T Consensus 77 i~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G--~~--v~~~~eda~r~-~~~~l~~~~~~~~ 151 (363)
T TIGR02090 77 IDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHG--LI--VEFSAEDATRT-DIDFLIKVFKRAE 151 (363)
T ss_pred HHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--CE--EEEEEeecCCC-CHHHHHHHHHHHH
Confidence 555677899987653 2211 233445556666655 43 45555554332 2222334444444
Q ss_pred cCCCceEEEEcCC----ChhhhHHHHHHHHhhCCCcEEEEeC
Q 021144 239 SCEQVVAVGINCT----SPRFIHGLILSVRKVTSKPVIIYPN 276 (317)
Q Consensus 239 ~~~~~~aiGvNC~----~p~~~~~~l~~l~~~~~~pl~vyPN 276 (317)
+ .+++.|.+-=+ .|..+..+++.+++..+.||.+...
T Consensus 152 ~-~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~~~l~~H~H 192 (363)
T TIGR02090 152 E-AGADRINIADTVGVLTPQKMEELIKKLKENVKLPISVHCH 192 (363)
T ss_pred h-CCCCEEEEeCCCCccCHHHHHHHHHHHhcccCceEEEEec
Confidence 3 46666554333 3899999999998876677766543
No 283
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=54.68 E-value=1.1e+02 Score=28.28 Aligned_cols=94 Identities=18% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHH--------------------HHHHHhCCCccEEEEEEEcCCCcccC
Q 021144 167 KEFHRRRVLILANSGADLIAFETIPNKLEAKAYA--------------------ELLEEEGITIPAWFSFNSKDGINVVS 226 (317)
Q Consensus 167 ~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~--------------------~~~~~~~~~~pv~iSf~~~~~~~l~~ 226 (317)
.++|++..+...+.|+|++. |..+...+.-+. +.+.+++ +|+++|. -
T Consensus 55 ~e~~~~L~~~~~~~gi~f~s--tpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tg--kPvIlST---------G 121 (241)
T PF03102_consen 55 EEQHKELFEYCKELGIDFFS--TPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTG--KPVILST---------G 121 (241)
T ss_dssp HHHHHHHHHHHHHTT-EEEE--EE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT---S-EEEE----------T
T ss_pred HHHHHHHHHHHHHcCCEEEE--CCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhC--CcEEEEC---------C
Q ss_pred CCcHHHHHHHhhcC---CCceEEEEcCCC--h----hhhHHHHHHHHhhCCCcEEE
Q 021144 227 GDSILECASIADSC---EQVVAVGINCTS--P----RFIHGLILSVRKVTSKPVII 273 (317)
Q Consensus 227 G~~l~~a~~~~~~~---~~~~aiGvNC~~--p----~~~~~~l~~l~~~~~~pl~v 273 (317)
+.++.++-..++-. .+...+-+=|++ | +.=+..|+.|++..+.|++.
T Consensus 122 ~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~~~vG~ 177 (241)
T PF03102_consen 122 MSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFGVPVGY 177 (241)
T ss_dssp T--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHSTSEEEE
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcCCCEEe
No 284
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=54.57 E-value=1.4e+02 Score=28.79 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=53.7
Q ss_pred CCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCc------HHHHHHHhhcCCCceEEEE----cC
Q 021144 181 GADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDS------ILECASIADSCEQVVAVGI----NC 250 (317)
Q Consensus 181 gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~------l~~a~~~~~~~~~~~aiGv----NC 250 (317)
++|++ |++++.-++.+-+++.+.++...|+.-+...| ++.|.. +.+.++.+.+..++..+|+ +|
T Consensus 93 ~~Dvs---~~sel~~arqlse~A~~~Gk~h~VlLmVd~~D---lreG~~~~~~~~l~~~V~eI~~lkGi~~vGlgTnF~C 166 (353)
T COG3457 93 KVDVS---TVSELDTARQLSEAAVRMGKVHDVLLMVDYGD---LREGQWGFLIEDLEETVEEIQQLKGIHLVGLGTNFPC 166 (353)
T ss_pred hcCeE---EEecHHHHHHHHHHHHHhCcceeEEEEEEccc---ccCcchhhHHHHHHHHHHHHhcCCCceEEeeeccccc
Confidence 68965 56678888888888888775567887776654 777865 6777777777777776666 78
Q ss_pred CC-----hhhhHHHHH
Q 021144 251 TS-----PRFIHGLIL 261 (317)
Q Consensus 251 ~~-----p~~~~~~l~ 261 (317)
-+ |+.+..+++
T Consensus 167 fg~v~PTp~n~~~ll~ 182 (353)
T COG3457 167 FGDVLPTPENLESLLQ 182 (353)
T ss_pred ccCcCCCcccHHHHHH
Confidence 42 566766665
No 285
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=54.52 E-value=1.8e+02 Score=26.92 Aligned_cols=94 Identities=24% Similarity=0.275 Sum_probs=54.9
Q ss_pred HHHHHhCCCCEEEecc-----------CCCHHH----HHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHH---HHH
Q 021144 174 VLILANSGADLIAFET-----------IPNKLE----AKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILE---CAS 235 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET-----------~p~~~E----a~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~---a~~ 235 (317)
++...+.|+|.|-+-. -.+.+| ++.+++.+++.+ ..+.+++ .+- .+.++.. .++
T Consensus 77 i~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G--~~v~~~~--eda----~r~~~~~l~~~~~ 148 (262)
T cd07948 77 ARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKG--IEVRFSS--EDS----FRSDLVDLLRVYR 148 (262)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC--CeEEEEE--Eee----CCCCHHHHHHHHH
Confidence 4445668999876632 112234 444556666654 4444444 332 2333444 444
Q ss_pred HhhcCCCceEEEEcCC----ChhhhHHHHHHHHhhCCCcEEEEeC
Q 021144 236 IADSCEQVVAVGINCT----SPRFIHGLILSVRKVTSKPVIIYPN 276 (317)
Q Consensus 236 ~~~~~~~~~aiGvNC~----~p~~~~~~l~~l~~~~~~pl~vyPN 276 (317)
.+.+ .+++.|.+-=+ .|..+..+++.+++..+.|+.+...
T Consensus 149 ~~~~-~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~~~i~~H~H 192 (262)
T cd07948 149 AVDK-LGVNRVGIADTVGIATPRQVYELVRTLRGVVSCDIEFHGH 192 (262)
T ss_pred HHHH-cCCCEEEECCcCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 4443 36666555433 3899999999999887788877663
No 286
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=54.38 E-value=2e+02 Score=27.27 Aligned_cols=141 Identities=12% Similarity=0.064 Sum_probs=76.9
Q ss_pred ChHHHHHHHHHHHHhhccccc-cccccccHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCC
Q 021144 53 SPHLVRKVHLDYLDAGANIII-TASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISS 131 (317)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~-TnTy~as~~~l~~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~ 131 (317)
+.+.+++.-..++++|++-|. .-|.+=.. -++.+|-+++++.+++.+. +
T Consensus 27 D~~~l~~lv~~li~~Gv~Gi~v~GstGE~~------~Lt~eEr~~v~~~~~~~~~------------------------g 76 (309)
T cd00952 27 DLDETARLVERLIAAGVDGILTMGTFGECA------TLTWEEKQAFVATVVETVA------------------------G 76 (309)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcccccch------hCCHHHHHHHHHHHHHHhC------------------------C
Confidence 456788888888999999554 34443221 3566777777777665431 2
Q ss_pred CCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccC----CCHHHHHHHHHHHHHhC
Q 021144 132 RPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETI----PNKLEAKAYAELLEEEG 207 (317)
Q Consensus 132 ~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~----p~~~Ea~a~~~~~~~~~ 207 (317)
+-+.|+| +|.. +.++..+ +++...+.|+|.+++=+- ++-+|+..-.+.+.+..
T Consensus 77 rvpvi~G-v~~~------------------~t~~ai~----~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~ 133 (309)
T cd00952 77 RVPVFVG-ATTL------------------NTRDTIA----RTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAV 133 (309)
T ss_pred CCCEEEE-eccC------------------CHHHHHH----HHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhC
Confidence 2335555 3321 3344333 566677789998887642 34445444444444332
Q ss_pred CCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCC
Q 021144 208 ITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTS 252 (317)
Q Consensus 208 ~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~ 252 (317)
.++|+++ ..+.. .+.---+++ .+..+.+. +..+||--++
T Consensus 134 ~~lPv~i-Yn~P~--~tg~~l~~~-~l~~L~~~--pnivgiKdss 172 (309)
T cd00952 134 PEMAIAI-YANPE--AFKFDFPRA-AWAELAQI--PQVVAAKYLG 172 (309)
T ss_pred CCCcEEE-EcCch--hcCCCCCHH-HHHHHhcC--CCEEEEEecC
Confidence 1489886 32321 111122333 34444433 4567777665
No 287
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=54.15 E-value=61 Score=30.75 Aligned_cols=63 Identities=11% Similarity=0.095 Sum_probs=44.4
Q ss_pred HHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcC
Q 021144 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (317)
Q Consensus 172 ~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC 250 (317)
+++...+++|+|.|.+..|+ .++++.+++.+++ .+.+.. .-|-+++.+.+++. .+++.|-+-+
T Consensus 208 eea~~a~~agaDiImLDnms-pe~l~~av~~~~~-----~~~lea--------SGGI~~~ni~~yA~--tGVD~Is~ga 270 (290)
T PRK06559 208 AAAEEAAAAGADIIMLDNMS-LEQIEQAITLIAG-----RSRIEC--------SGNIDMTTISRFRG--LAIDYVSSGS 270 (290)
T ss_pred HHHHHHHHcCCCEEEECCCC-HHHHHHHHHHhcC-----ceEEEE--------ECCCCHHHHHHHHh--cCCCEEEeCc
Confidence 34555667999999999986 8888888876652 222222 24777887777765 5788887777
No 288
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=54.03 E-value=2.1e+02 Score=27.88 Aligned_cols=115 Identities=13% Similarity=0.053 Sum_probs=63.6
Q ss_pred CCCCHHH---HHHHHHHHHHHHHhCCCCEE--------EeccCCCH--------------HHHH---HHHHHHHHhCCCc
Q 021144 159 DAVSLET---LKEFHRRRVLILANSGADLI--------AFETIPNK--------------LEAK---AYAELLEEEGITI 210 (317)
Q Consensus 159 ~~~s~~e---l~~~h~~qi~~l~~~gvD~l--------~~ET~p~~--------------~Ea~---a~~~~~~~~~~~~ 210 (317)
..+|.+| +.+.|..-++...++|.|.+ ++..|-+. .-++ .+++++++...+-
T Consensus 147 ~~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~ 226 (362)
T PRK10605 147 RALELEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGAD 226 (362)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 3467665 55567777777788999999 34444332 1133 4555556543222
Q ss_pred cEEEEEEEcCC-CcccCCCcHHH-HHHH---hhcCCCceEEEEcCCC----hhhhHHHHHHHHhhCCCcEEEE
Q 021144 211 PAWFSFNSKDG-INVVSGDSILE-CASI---ADSCEQVVAVGINCTS----PRFIHGLILSVRKVTSKPVIIY 274 (317)
Q Consensus 211 pv~iSf~~~~~-~~l~~G~~l~~-a~~~---~~~~~~~~aiGvNC~~----p~~~~~~l~~l~~~~~~pl~vy 274 (317)
++.+-++..+. .....|.++++ ++.. +.. .+++.|-|.|.. +.....+.+.+++..+.|+++-
T Consensus 227 ~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~-~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv~~~ 298 (362)
T PRK10605 227 RIGIRISPLGTFNNVDNGPNEEADALYLIEQLGK-RGIAYLHMSEPDWAGGEPYSDAFREKVRARFHGVIIGA 298 (362)
T ss_pred eEEEEECCccccccCCCCCCHHHHHHHHHHHHHH-cCCCEEEeccccccCCccccHHHHHHHHHHCCCCEEEe
Confidence 34444443221 12345777766 4443 433 468888777742 1223445567777777786653
No 289
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=53.53 E-value=2e+02 Score=27.13 Aligned_cols=140 Identities=21% Similarity=0.190 Sum_probs=79.5
Q ss_pred CccccccccCCChH---HHHHHHHHHHHhhccccc---ccccc---ccHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 021144 42 DPLWSAKCLVSSPH---LVRKVHLDYLDAGANIII---TASYQ---ATIQGFEAKGFSTEEAEALLRRSVEIACEAREIY 112 (317)
Q Consensus 42 ~~lws~~~ll~~Pe---~V~~iH~~Yl~AGAdiI~---TnTy~---as~~~l~~~g~~~~~~~~l~~~av~lAr~A~~~~ 112 (317)
-|.|+-..--+.++ .+.+.|....++.=...- -.+-+ +-...|.++|.+++++.+.++.|+++|++.+++.
T Consensus 41 lps~~~g~~~~~~edy~r~yd~~lr~ve~~r~e~~~~~~~vvGvHPaE~~~l~e~~~~peea~e~m~~~lelA~k~v~eg 120 (285)
T COG1831 41 LPSWSYGIAPTGGEDYRRLYDIHLRLVEKIREEGPVEAYAVVGVHPAEVSRLAEAGRSPEEALEEMRHALELAAKLVEEG 120 (285)
T ss_pred cccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCceeEEEeccCHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHhcc
Confidence 47888444333444 455666666666322111 12223 4445677778777889999999999999888642
Q ss_pred HhhccCCCCCCCCCCCCCCCCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HhCCCCEEEeccCC
Q 021144 113 YDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLIL-ANSGADLIAFETIP 191 (317)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l-~~~gvD~l~~ET~p 191 (317)
.+ | .||=.|. +.|. ++.+....++.-...++ +...+|+-+.=-..
T Consensus 121 --------------------~a-v--aiGEvGr---------PHyp--Vs~~v~~~~n~vl~~a~elA~dvdc~vqLHte 166 (285)
T COG1831 121 --------------------KA-V--AIGEVGR---------PHYP--VSEEVWEASNEVLEYAMELAKDVDCAVQLHTE 166 (285)
T ss_pred --------------------ce-e--eeeccCC---------CCCC--CCHHHHHHHHHHHHHHHHHhhcCCCcEEEecC
Confidence 21 1 2555553 4664 46555555444433344 22346654432222
Q ss_pred C--HHHHHHHHHHHHHhCCCccEEEEE
Q 021144 192 N--KLEAKAYAELLEEEGITIPAWFSF 216 (317)
Q Consensus 192 ~--~~Ea~a~~~~~~~~~~~~pv~iSf 216 (317)
+ -++.+.+-+.+++.+. .|.-+-.
T Consensus 167 s~~~~~~~~i~~~ak~~G~-~~~~VVk 192 (285)
T COG1831 167 SLDEETYEEIAEMAKEAGI-KPYRVVK 192 (285)
T ss_pred CCChHHHHHHHHHHHHhCC-CcceeEe
Confidence 2 4457788888898873 3544433
No 290
>PRK09389 (R)-citramalate synthase; Provisional
Probab=53.42 E-value=2.6e+02 Score=28.45 Aligned_cols=64 Identities=17% Similarity=0.189 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhCCCCEEEe-ccCC--CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhh
Q 021144 168 EFHRRRVLILANSGADLIAF-ETIP--NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (317)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~-ET~p--~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~ 238 (317)
+|..+.++.+.++|+|-|.+ -|+- ...++..+++.+++. .++-++|-|.++ .|..++.+...+.
T Consensus 143 ~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~---~~v~l~~H~HND----~GlAvANalaAv~ 209 (488)
T PRK09389 143 DFLKELYKAGIEAGADRICFCDTVGILTPEKTYELFKRLSEL---VKGPVSIHCHND----FGLAVANTLAALA 209 (488)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCcCHHHHHHHHHHHHhh---cCCeEEEEecCC----ccHHHHHHHHHHH
Confidence 34555666777899998754 4543 567777788877763 345578888765 3545555554443
No 291
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=53.41 E-value=2.2e+02 Score=28.48 Aligned_cols=113 Identities=13% Similarity=0.034 Sum_probs=61.5
Q ss_pred CeEEEEeeCC-CcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEE-----Ee-ccCCCHHH-HHHHHHHH-
Q 021144 133 PVLVAASVGS-YGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLI-----AF-ETIPNKLE-AKAYAELL- 203 (317)
Q Consensus 133 ~~~VagsiGP-~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l-----~~-ET~p~~~E-a~a~~~~~- 203 (317)
++++..-|=| .| ++.+++.+ ++..+..+|+|+| +. -.+.-++| ++++.+++
T Consensus 144 RPL~gtiiKP~~G----------------lsp~~~a~----~~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~ 203 (412)
T TIGR03326 144 RPLLGTVPKPKVG----------------LSTEEHAK----VAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRD 203 (412)
T ss_pred CceEEeecccccc----------------CChHHHHH----HHHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHH
Confidence 5566666777 44 35555444 5666777999998 22 23333433 44555555
Q ss_pred ---HHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCC--ChhhhHHHHHHHHh---hCCCcEEEEe
Q 021144 204 ---EEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT--SPRFIHGLILSVRK---VTSKPVIIYP 275 (317)
Q Consensus 204 ---~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~--~p~~~~~~l~~l~~---~~~~pl~vyP 275 (317)
++++ .+.+-++.+..+ -..+.+-++.+.+ .+..++.+|.. +... ++.+++ ..+.||...|
T Consensus 204 ~a~~eTG--~~~~ya~NiT~~-----~~em~~ra~~~~~-~G~~~~mv~~~~~G~~~----l~~l~~~~~~~~l~ih~Hr 271 (412)
T TIGR03326 204 KVEAETG--ERKEYLANITAP-----VREMERRAELVAD-LGGQYVMVDVVVCGWSA----LQYIRELTEDLGLAIHAHR 271 (412)
T ss_pred HHHHHhC--CcceEEEEecCC-----HHHHHHHHHHHHH-hCCCeEEEEeeccchHH----HHHHHHhhccCCeEEEEcC
Confidence 3455 555556655322 1122233333333 46677888774 3332 444443 4578888888
Q ss_pred CC
Q 021144 276 NS 277 (317)
Q Consensus 276 Na 277 (317)
+.
T Consensus 272 a~ 273 (412)
T TIGR03326 272 AM 273 (412)
T ss_pred Cc
Confidence 76
No 292
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=53.34 E-value=82 Score=29.98 Aligned_cols=63 Identities=11% Similarity=0.109 Sum_probs=43.7
Q ss_pred HHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcC
Q 021144 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (317)
Q Consensus 172 ~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC 250 (317)
+|+...+++|+|.|.+..|+ .++++.+++.++. .+.+.. .-|-++..+.+++. .+++.|-+-+
T Consensus 216 eea~eA~~aGaDiImLDnms-pe~l~~av~~~~~-----~~~lEa--------SGGIt~~ni~~yA~--tGVD~IS~ga 278 (294)
T PRK06978 216 AQLETALAHGAQSVLLDNFT-LDMMREAVRVTAG-----RAVLEV--------SGGVNFDTVRAFAE--TGVDRISIGA 278 (294)
T ss_pred HHHHHHHHcCCCEEEECCCC-HHHHHHHHHhhcC-----CeEEEE--------ECCCCHHHHHHHHh--cCCCEEEeCc
Confidence 45555677999999999986 7788888876542 222222 24677877777665 5788877666
No 293
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=52.97 E-value=66 Score=30.01 Aligned_cols=60 Identities=22% Similarity=0.221 Sum_probs=41.8
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEE
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGv 248 (317)
|+....+.|+|+|.+..|. .++++.+++.++. .+|+.++ -|-+++.+...+. .++++|.+
T Consensus 190 ea~~A~~~gaDyI~ld~~~-~e~lk~~v~~~~~---~ipi~As----------GGI~~~ni~~~a~--~Gvd~Isv 249 (265)
T TIGR00078 190 EAEEAAEAGADIIMLDNMK-PEEIKEAVQLLKG---RVLLEAS----------GGITLDNLEEYAE--TGVDVISS 249 (265)
T ss_pred HHHHHHHcCCCEEEECCCC-HHHHHHHHHHhcC---CCcEEEE----------CCCCHHHHHHHHH--cCCCEEEe
Confidence 3444556899999999976 5777777775542 2676544 3677777777665 47888887
No 294
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=52.89 E-value=1.5e+02 Score=27.53 Aligned_cols=103 Identities=11% Similarity=0.067 Sum_probs=61.9
Q ss_pred HHHHHHhCCCCEEEeccCCCHH---HHHHHHHHHHHhCCCccEEEEEEEc---CCC-c-------ccCCCcHH-HHHHHh
Q 021144 173 RVLILANSGADLIAFETIPNKL---EAKAYAELLEEEGITIPAWFSFNSK---DGI-N-------VVSGDSIL-ECASIA 237 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~---Ea~a~~~~~~~~~~~~pv~iSf~~~---~~~-~-------l~~G~~l~-~a~~~~ 237 (317)
+++.+.++|+|-+.+-|.---+ .-..+-++.++++ +-.+++|+-++ ++. + -.++.++. +.++.+
T Consensus 89 ~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG-~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~ 167 (253)
T TIGR02129 89 NAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVG-KDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEEL 167 (253)
T ss_pred HHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhC-CCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHHH
Confidence 4666777999999998843111 0223444556665 35788899886 321 2 12455666 777777
Q ss_pred hcCCCceEEEEcCCChhhh-----HHHHHHHHhhCCCcEEEEeCCC
Q 021144 238 DSCEQVVAVGINCTSPRFI-----HGLILSVRKVTSKPVIIYPNSG 278 (317)
Q Consensus 238 ~~~~~~~aiGvNC~~p~~~-----~~~l~~l~~~~~~pl~vyPNaG 278 (317)
.. . +..|-++-.+-+.+ ..+++.+.+.++.|+++--=.|
T Consensus 168 ~~-~-~~~il~TdI~rDGtl~G~dlel~~~l~~~~~ipVIASGGv~ 211 (253)
T TIGR02129 168 SK-Y-CDEFLIHAADVEGLCKGIDEELVSKLGEWSPIPITYAGGAK 211 (253)
T ss_pred Hh-h-CCEEEEeeecccCccccCCHHHHHHHHhhCCCCEEEECCCC
Confidence 64 2 55666665432222 4577788887888977654443
No 295
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=52.60 E-value=2.3e+02 Score=27.61 Aligned_cols=114 Identities=16% Similarity=0.116 Sum_probs=65.1
Q ss_pred CCCCHHH---HHHHHHHHHHHHHhCCCCEEEecc--------CC-------------CH-HH---HHHHHHHHHHh-CCC
Q 021144 159 DAVSLET---LKEFHRRRVLILANSGADLIAFET--------IP-------------NK-LE---AKAYAELLEEE-GIT 209 (317)
Q Consensus 159 ~~~s~~e---l~~~h~~qi~~l~~~gvD~l~~ET--------~p-------------~~-~E---a~a~~~~~~~~-~~~ 209 (317)
+.+|.+| +.+.|..-++...++|.|.|=+=. |- ++ .- +..+++++++. +.+
T Consensus 132 ~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d 211 (361)
T cd04747 132 REMTEADIDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPD 211 (361)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 4477666 455677667777789999983321 11 11 11 23455666664 456
Q ss_pred ccEEEEEEEcCCCc--ccCCCcHHHHHHH---hhcCCCceEEEEcCC---Chhh---hHHHHHHHHhhCCCcEEE
Q 021144 210 IPAWFSFNSKDGIN--VVSGDSILECASI---ADSCEQVVAVGINCT---SPRF---IHGLILSVRKVTSKPVII 273 (317)
Q Consensus 210 ~pv~iSf~~~~~~~--l~~G~~l~~a~~~---~~~~~~~~aiGvNC~---~p~~---~~~~l~~l~~~~~~pl~v 273 (317)
.|+.+-++..+... ...|.++.+.++. +.. .+++.|-+.|. .|.. -..+.+.+++..+.|+++
T Consensus 212 ~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~-~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~~~~pv~~ 285 (361)
T cd04747 212 FPIILRFSQWKQQDYTARLADTPDELEALLAPLVD-AGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLTGLPTIT 285 (361)
T ss_pred CeEEEEECcccccccccCCCCCHHHHHHHHHHHHH-cCCCEEEecCCCccCCCcCccchhHHHHHHHHcCCCEEE
Confidence 78888777422111 1236788777655 443 47888777553 2311 124456667777888665
No 296
>PRK05826 pyruvate kinase; Provisional
Probab=52.57 E-value=1.7e+02 Score=29.67 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCC-CccEEEEE
Q 021144 161 VSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGI-TIPAWFSF 216 (317)
Q Consensus 161 ~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~-~~pv~iSf 216 (317)
++..+..+ ++..++.|+|+|++=-+.+.++++.+.+.+++.+. +..+++-+
T Consensus 171 lte~D~~~-----i~~ald~g~d~I~~sfV~saedv~~l~~~l~~~~~~~~~iiakI 222 (465)
T PRK05826 171 LTEKDKAD-----IKFAAEQGVDYIAVSFVRSAEDVEEARRLLREAGCPHAKIIAKI 222 (465)
T ss_pred CChhhHHH-----HHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHcCCcCceEEEEE
Confidence 45544443 55567899999999999999999999999988764 44555444
No 297
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=52.40 E-value=1.4e+02 Score=27.33 Aligned_cols=79 Identities=10% Similarity=0.021 Sum_probs=49.6
Q ss_pred HHHHHHhCCCCEEEecc---CCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEc
Q 021144 173 RVLILANSGADLIAFET---IPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGIN 249 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET---~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvN 249 (317)
.++.+...|.|++++.. ..+..++..++.+++..+ ..+++-+ ... +...+-+.++ .++++|-+=
T Consensus 25 ~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g--~~~~VRv--------~~~-~~~~i~~~Ld--~Ga~gIivP 91 (249)
T TIGR02311 25 AAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYP--SSPVVRP--------AIG-DPVLIKQLLD--IGAQTLLVP 91 (249)
T ss_pred HHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcC--CCcEEEC--------CCC-CHHHHHHHhC--CCCCEEEec
Confidence 35667779999999974 445666666666555444 4556544 122 2224444444 477888777
Q ss_pred CC-ChhhhHHHHHHHH
Q 021144 250 CT-SPRFIHGLILSVR 264 (317)
Q Consensus 250 C~-~p~~~~~~l~~l~ 264 (317)
.+ +++.+..+++..+
T Consensus 92 ~v~s~e~a~~~v~~~~ 107 (249)
T TIGR02311 92 MIETAEQAEAAVAATR 107 (249)
T ss_pred CcCCHHHHHHHHHHcC
Confidence 76 6888888777654
No 298
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=52.36 E-value=83 Score=28.63 Aligned_cols=77 Identities=16% Similarity=0.100 Sum_probs=53.8
Q ss_pred HHHHHh-CCCCEEEeccCCCHHHHHHHHHHHHHh--CCCccEEEEEEEcCCCcccCCCcHHHH---HHHhh-cCCCceEE
Q 021144 174 VLILAN-SGADLIAFETIPNKLEAKAYAELLEEE--GITIPAWFSFNSKDGINVVSGDSILEC---ASIAD-SCEQVVAV 246 (317)
Q Consensus 174 i~~l~~-~gvD~l~~ET~p~~~Ea~a~~~~~~~~--~~~~pv~iSf~~~~~~~l~~G~~l~~a---~~~~~-~~~~~~ai 246 (317)
++.++. ..+|+ ++|+-++.-+.++-+++.+. +...+|+|.+.+..+. ...|.+++++ ++.+. ..+++...
T Consensus 81 ~k~i~~~~~~~~--ihsvDs~~la~~L~~~a~~~~~~~~~~VlIqVn~g~e~-~K~Gv~~~e~~~l~~~i~~~~~~L~l~ 157 (227)
T cd06822 81 VKKLLKVPNLYM--VETVDSEKLADKLNKAWEKLGEREPLKVMVQVNTSGEE-SKSGLEPSEAVELVKHIIEECPNLKFS 157 (227)
T ss_pred HHHHhccccccE--EEecCCHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC-CCCCCCHHHHHHHHHHHHhhCCCceEE
Confidence 444432 23564 59999999999988888776 6568899999875432 3578776554 44554 56788899
Q ss_pred EEcCCCh
Q 021144 247 GINCTSP 253 (317)
Q Consensus 247 GvNC~~p 253 (317)
|+-|..|
T Consensus 158 GLMt~~~ 164 (227)
T cd06822 158 GLMTIGS 164 (227)
T ss_pred EEEeeCC
Confidence 9999754
No 299
>PLN02417 dihydrodipicolinate synthase
Probab=52.32 E-value=2e+02 Score=26.74 Aligned_cols=47 Identities=17% Similarity=0.090 Sum_probs=29.5
Q ss_pred ChHHHHHHHHHHHHhhccccccccccccHHHHHhCCCCHHHHHHHHHHHHHH
Q 021144 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEI 104 (317)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~l 104 (317)
+.+.+++.-+-+++.|++-|..+--..-... ++.+|-+++++.+++.
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~-----ls~~Er~~~~~~~~~~ 66 (280)
T PLN02417 20 DLEAYDSLVNMQIENGAEGLIVGGTTGEGQL-----MSWDEHIMLIGHTVNC 66 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcchhh-----CCHHHHHHHHHHHHHH
Confidence 4567778778889999997765543333222 3556666666655543
No 300
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=52.20 E-value=2.4e+02 Score=27.62 Aligned_cols=167 Identities=12% Similarity=0.080 Sum_probs=0.0
Q ss_pred CCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec-------------------cCCC
Q 021144 132 RPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFE-------------------TIPN 192 (317)
Q Consensus 132 ~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~E-------------------T~p~ 192 (317)
+..+|.+.++.++..-.+| .-.+++.+||+++++ .|+=+|+.| .+.+
T Consensus 13 kNRiv~apm~~~~~~~~dg----------~~t~~~~~yy~~rA~----gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~ 78 (382)
T cd02931 13 KNRFAMAPMGPLGLADNDG----------AFNQRGIDYYVERAK----GGTGLIITGVTMVDNEIEQFPMPSLPCPTYNP 78 (382)
T ss_pred eCCcEeCCcCcccccCCCC----------CCCHHHHHHHHHHhc----CCCCEEEEEEEEeCCcccccCCCCccccccCC
Q ss_pred ---HHHHHHHHHHHHHhCCCccEEEEEEEc----------------------------CCCcccCCCcHHHHHHHhhcC-
Q 021144 193 ---KLEAKAYAELLEEEGITIPAWFSFNSK----------------------------DGINVVSGDSILECASIADSC- 240 (317)
Q Consensus 193 ---~~Ea~a~~~~~~~~~~~~pv~iSf~~~----------------------------~~~~l~~G~~l~~a~~~~~~~- 240 (317)
+...+.+++++.+.+ .++++.+.-. ...+-++...+.++++....+
T Consensus 79 ~~~i~~~k~l~davh~~G--~~i~~QL~H~~Gr~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA 156 (382)
T cd02931 79 TAFIRTAKEMTERVHAYG--TKIFLQLTAGFGRVCIPGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGKFGESA 156 (382)
T ss_pred HHHhHHHHHHHHHHHHcC--CEEEEEccCcCCCccCccccCCCCccCCCCCCCCcCCCCCCCcCCHHHHHHHHHHHHHHH
Q ss_pred -----CCceEEEEcCCC---------------------------hhhhHHHHHHHHhhC--CCcEEEEeCCCCccccccc
Q 021144 241 -----EQVVAVGINCTS---------------------------PRFIHGLILSVRKVT--SKPVIIYPNSGETYNAELK 286 (317)
Q Consensus 241 -----~~~~aiGvNC~~---------------------------p~~~~~~l~~l~~~~--~~pl~vyPNaG~~~d~~~~ 286 (317)
.+.++|-|+|++ +..+..+|+.+++.. +.||.+.=|.-+.......
T Consensus 157 ~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~ 236 (382)
T cd02931 157 VIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQ 236 (382)
T ss_pred HHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcccccc
Q ss_pred ------cccccCCCChhhHHHHHHHHHHcccccccc
Q 021144 287 ------KWVVSFSLHFFPLELILNPFASCRLISFFS 316 (317)
Q Consensus 287 ------~w~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 316 (317)
++. ..+.++++..+.++...+.| +.++.
T Consensus 237 ~~~~~~~~~-~~g~~~e~~~~~~~~l~~~g-vD~l~ 270 (382)
T cd02931 237 GALPGEEFQ-EKGRDLEEGLKAAKILEEAG-YDALD 270 (382)
T ss_pred ccccccccc-cCCCCHHHHHHHHHHHHHhC-CCEEE
No 301
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=52.16 E-value=1.1e+02 Score=25.67 Aligned_cols=82 Identities=22% Similarity=0.316 Sum_probs=53.4
Q ss_pred CEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCChhhhHHHHHH
Q 021144 183 DLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILS 262 (317)
Q Consensus 183 D~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~p~~~~~~l~~ 262 (317)
=+|.+| ||...-...-.++.+.| ..++.+. .....+..|+++.|.+..+.. . .++|.+-.... ..+++
T Consensus 43 ~~lF~e--~StRTR~SFe~A~~~LG-g~~i~~~---~~~s~~~k~Esl~Dtar~ls~-~-~D~iv~R~~~~----~~~~~ 110 (142)
T PF02729_consen 43 ALLFFE--PSTRTRLSFEAAANRLG-GHVIYLD---PSTSSLGKGESLEDTARVLSR-Y-VDAIVIRHPSH----GALEE 110 (142)
T ss_dssp EEEESS----HHHHHHHHHHHHHTT-CEEEEEE---TTTSSTTTSSEHHHHHHHHHH-H-CSEEEEEESSH----HHHHH
T ss_pred EEEecC--CCchhhhhHHHhhhcce-eEEEEEC---cccccCcCCCCHHHHHHHHHH-h-hheEEEEeccc----hHHHH
Confidence 344445 67766555555677776 3444444 455567789999999998875 3 67777775543 45667
Q ss_pred HHhhCCCcEEEEeCCCC
Q 021144 263 VRKVTSKPVIIYPNSGE 279 (317)
Q Consensus 263 l~~~~~~pl~vyPNaG~ 279 (317)
+.+..+.|+ -|+|.
T Consensus 111 ~a~~~~vPV---INa~~ 124 (142)
T PF02729_consen 111 LAEHSSVPV---INAGD 124 (142)
T ss_dssp HHHHCSSEE---EEEEE
T ss_pred HHHhccCCe---EcCcC
Confidence 777788998 47774
No 302
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=52.14 E-value=2.3e+02 Score=28.20 Aligned_cols=112 Identities=20% Similarity=0.212 Sum_probs=63.8
Q ss_pred CeEEEEeeCC-CcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEE-----Eec-cCCCHHH-HHHHHHHHH
Q 021144 133 PVLVAASVGS-YGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLI-----AFE-TIPNKLE-AKAYAELLE 204 (317)
Q Consensus 133 ~~~VagsiGP-~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l-----~~E-T~p~~~E-a~a~~~~~~ 204 (317)
++++..-|=| .| ++.+++.+ ++..+..+|+|+| +.. ++.-++| ++++.++++
T Consensus 143 RPLigtiiKP~~G----------------lsp~~~a~----~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~ 202 (406)
T cd08207 143 RPLIGTIIKPSVG----------------LTPEETAA----LVRQLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVIN 202 (406)
T ss_pred CceEEEecccccC----------------CCHHHHHH----HHHHHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHH
Confidence 5677776777 45 36666444 5566777999987 333 2333333 445555554
Q ss_pred ----HhCCCccEEEEEEEcCCCcccCCCcHHHHHH---HhhcCCCceEEEEcCCChhhhHHHHHHHHhhCCCcEEEEeCC
Q 021144 205 ----EEGITIPAWFSFNSKDGINVVSGDSILECAS---IADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNS 277 (317)
Q Consensus 205 ----~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~---~~~~~~~~~aiGvNC~~p~~~~~~l~~l~~~~~~pl~vyPNa 277 (317)
+++ .+.+-++.+. |. ..+..+ .+.+ .+..++.+|....- ...++.+++..+.||...|+.
T Consensus 203 ~a~~eTG--~~~~y~~NiT-------~~-~~em~~ra~~~~~-~G~~~~mv~~~~~G--~~~l~~l~~~~~l~IhaHra~ 269 (406)
T cd08207 203 DHAQRTG--RKVMYAFNIT-------DD-IDEMRRNHDLVVE-AGGTCVMVSLNSVG--LSGLAALRRHSQLPIHGHRNG 269 (406)
T ss_pred HHHHhhC--CcceEEEecC-------CC-HHHHHHHHHHHHH-hCCCeEEEeccccc--hHHHHHHHhcCCceEEECCCc
Confidence 344 5555566553 22 333333 3333 46677778774211 133556666678899988886
No 303
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=52.06 E-value=2.4e+02 Score=27.55 Aligned_cols=82 Identities=15% Similarity=0.067 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEeccC----CCH--HHHHHHHHHHHHhCCCccEEEEEEEcCCCc---------cc
Q 021144 161 VSLETLKEFHRRRVLILANSGADLIAFETI----PNK--LEAKAYAELLEEEGITIPAWFSFNSKDGIN---------VV 225 (317)
Q Consensus 161 ~s~~el~~~h~~qi~~l~~~gvD~l~~ET~----p~~--~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~---------l~ 225 (317)
.+.+++.+ .++.|.+.|+|+|=+=+- |.. ... -....+++.- ++||+++-.+.+..+ -.
T Consensus 232 ~~~~e~~~----~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~-~~~~~~k~~~-~~pv~~~G~i~~~~~~~~~~~~~~~~ 305 (361)
T cd04747 232 DTPDELEA----LLAPLVDAGVDIFHCSTRRFWEPEFEGSEL-NLAGWTKKLT-GLPTITVGSVGLDGDFIGAFAGDEGA 305 (361)
T ss_pred CCHHHHHH----HHHHHHHcCCCEEEecCCCccCCCcCccch-hHHHHHHHHc-CCCEEEECCccccccccccccccccc
Confidence 46665533 455677789999854221 100 011 1223344432 578887544321110 01
Q ss_pred CCCcHHHHHHHhhcCCCceEEEEc
Q 021144 226 SGDSILECASIADSCEQVVAVGIN 249 (317)
Q Consensus 226 ~G~~l~~a~~~~~~~~~~~aiGvN 249 (317)
+-.+++++-+.+.. ..++.|++-
T Consensus 306 ~~~~~~~a~~~l~~-g~~D~V~~g 328 (361)
T cd04747 306 SPASLDRLLERLER-GEFDLVAVG 328 (361)
T ss_pred ccCCHHHHHHHHHC-CCCCeehhh
Confidence 33567777777764 356665553
No 304
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=51.86 E-value=2.4e+02 Score=28.74 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhhcccccccccccc
Q 021144 55 HLVRKVHLDYLDAGANIIITASYQAT 80 (317)
Q Consensus 55 e~V~~iH~~Yl~AGAdiI~TnTy~as 80 (317)
+.+.+.-+.++++|+|+|.-.+=+.+
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a~~~ 251 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTAHGH 251 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEeccCCc
Confidence 34666777888899998876554433
No 305
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=51.79 E-value=43 Score=30.10 Aligned_cols=43 Identities=9% Similarity=0.099 Sum_probs=32.6
Q ss_pred HHHHHHHHhCCCCEEEeccCC--CHHHHHHHHHHHHHhCCCccEEE
Q 021144 171 RRRVLILANSGADLIAFETIP--NKLEAKAYAELLEEEGITIPAWF 214 (317)
Q Consensus 171 ~~qi~~l~~~gvD~l~~ET~p--~~~Ea~a~~~~~~~~~~~~pv~i 214 (317)
...++.+.+.|+|.|++-+-. +..++...++.+|+.. ++|+++
T Consensus 14 ~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~-~lPvil 58 (205)
T TIGR01769 14 EKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKIT-NLPVIL 58 (205)
T ss_pred HHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhc-CCCEEE
Confidence 335667888999999997433 5567777888898854 699997
No 306
>PF02515 CoA_transf_3: CoA-transferase family III; InterPro: IPR003673 CoA-transferases are found in organisms from all kingdoms of life. They catalyse reversible transfer reactions of coenzyme A groups from CoA-thioesters to free acids. There are at least three families of CoA-transferases, which differ in sequence and reaction mechanism: Family I consists of CoA-transferases for 3-oxoacids (2.8.3.5 from EC, 2.8.3.6 from EC), short-chain fatty acids (2.8.3.8 from EC, 2.8.3.9 from EC) and glutaconate (2.8.3.12 from EC). Most use succinyl-CoA or acetyl-CoA as CoA donors. Family II consists of the homodimeric alpha-subunits of citrate lyase and citramalate lyase (2.8.3.10 from EC, 2.8.3.11 from EC). These enzymes catalyse the transfer of acyl carrier protein (ACP) with a covalently bound CoA derivative, but can accept free CoA thioesters as well. Family III consists of formyl-CoA:oxalate CoA-transferase [], succinyl-CoA:(R)-benzylsuccinate CoA-transferase [], (E)-cinnamoyl-CoA:(R)-phenyllactate CoA-transferase [], and butyrobetainyl-CoA:(R)-carnitine CoA-transferase []. These CoA-transferases occur in prokaryotes and eukaryotes, and catalyse CoA-transfer reactions in a highly substrate- and stereo-specific manner []. This entry represents family III CoA-transferases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1PT7_B 1PT8_A 1PQY_A 1Q7E_A 1Q6Y_A 1PT5_A 1XK6_B 1XK7_C 1XVT_A 1XVU_A ....
Probab=51.74 E-value=58 Score=28.45 Aligned_cols=40 Identities=23% Similarity=0.149 Sum_probs=23.6
Q ss_pred cCCChHHHHHHHHHHHHhhccccccccccccHHHHHhCCCCHHHH
Q 021144 50 LVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEA 94 (317)
Q Consensus 50 ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~ 94 (317)
.+.+||-.+.+++ |-+.|||++.|-= +..+.+.|++.++.
T Consensus 4 Dl~~~~gr~~l~~--L~~~ADV~i~n~r---pg~~~~lGl~~~~l 43 (191)
T PF02515_consen 4 DLKSPEGRAALRR--LLATADVVIENFR---PGVLERLGLDYEAL 43 (191)
T ss_dssp ETTSHHHHHHHHH--HHHT-SEEEEESS---TTHHHHTT-SHHHH
T ss_pred eCcCHHHHHHHHH--HHHhCCEEEECCc---hhhhHhcCCCHHHH
Confidence 3566665544443 3457999998864 44566679986544
No 307
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=51.69 E-value=1.3e+02 Score=27.93 Aligned_cols=78 Identities=9% Similarity=0.004 Sum_probs=51.1
Q ss_pred HHHHHHhCCCCEEEec---cCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEc
Q 021144 173 RVLILANSGADLIAFE---TIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGIN 249 (317)
Q Consensus 173 qi~~l~~~gvD~l~~E---T~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvN 249 (317)
.++.+...|-|++++. +..++.++..++.+++..+ .+.+|-+. +. +...+-+.++ .++.+|-+-
T Consensus 32 ~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g--~~~lVRvp--------~~-~~~~i~r~LD--~Ga~giivP 98 (256)
T PRK10558 32 TTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSA--SAPVVRVP--------TN-EPVIIKRLLD--IGFYNFLIP 98 (256)
T ss_pred HHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcC--CCcEEECC--------CC-CHHHHHHHhC--CCCCeeeec
Confidence 4667888999999997 4557888888888888755 66665552 22 2333334444 367777776
Q ss_pred CC-ChhhhHHHHHHH
Q 021144 250 CT-SPRFIHGLILSV 263 (317)
Q Consensus 250 C~-~p~~~~~~l~~l 263 (317)
.+ .++.+..+++..
T Consensus 99 ~v~tae~a~~~v~a~ 113 (256)
T PRK10558 99 FVETAEEARRAVAST 113 (256)
T ss_pred CcCCHHHHHHHHHHc
Confidence 65 566666666543
No 308
>PRK00784 cobyric acid synthase; Provisional
Probab=51.69 E-value=1.2e+02 Score=30.71 Aligned_cols=104 Identities=17% Similarity=0.129 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHH------HHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHH
Q 021144 161 VSLETLKEFHRRRVLILANSGADLIAFETIPNKLEA------KAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECA 234 (317)
Q Consensus 161 ~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea------~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~ 234 (317)
+..+.+.+.|+ .+. .+.|++++|-.-.+.|. ....++++..+ .||++-..++ .|.++..+.
T Consensus 110 ~~~~~I~~~~~----~l~-~~~D~vIVEGaGg~~~~~L~~~~~~~~dlak~l~--~PVILV~~~~------~g~~~~~i~ 176 (488)
T PRK00784 110 RLLEAVLESLD----RLA-AEYDVVVVEGAGSPAEINLRDRDIANMGFAEAAD--APVILVADID------RGGVFASLV 176 (488)
T ss_pred hhHHHHHHHHH----HHH-hcCCEEEEECCCCccccCcccCCchhHHHHHHcC--CCEEEEEeCC------cCcHHHHHH
Confidence 35566655553 233 46899999966222221 23556777765 8998855432 244455443
Q ss_pred ---HHhhcC--CCceEEEEcCCChh--hhHHHHHHHHhhCCCc-EEEEeCC
Q 021144 235 ---SIADSC--EQVVAVGINCTSPR--FIHGLILSVRKVTSKP-VIIYPNS 277 (317)
Q Consensus 235 ---~~~~~~--~~~~aiGvNC~~p~--~~~~~l~~l~~~~~~p-l~vyPNa 277 (317)
+.+... ..+.+|=+|+..++ .+....+.+.+..+.| |.+-|..
T Consensus 177 ~~~~~l~~~~~~~i~GvI~N~v~~~~~~~~~~~~~l~~~~gipvLG~iP~~ 227 (488)
T PRK00784 177 GTLALLPPEERARVKGFIINKFRGDISLLEPGLDWLEELTGVPVLGVLPYL 227 (488)
T ss_pred HHHHhcChhhCCcEEEEEEECCCCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 333321 25778999998643 2345555566666777 5566653
No 309
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=51.62 E-value=2.1e+02 Score=26.79 Aligned_cols=65 Identities=12% Similarity=0.158 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhCCCCEEEec-cCC--CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhc
Q 021144 169 FHRRRVLILANSGADLIAFE-TIP--NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS 239 (317)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~E-T~p--~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~ 239 (317)
+..+.++.+.+.|+|-|.+= |+- +..++..+++.+++..++ +-++|-+.++ .|..+..++..+..
T Consensus 148 ~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~--~~i~~H~Hnd----~Gla~AN~laA~~a 215 (280)
T cd07945 148 YVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYPN--LHFDFHAHND----YDLAVANVLAAVKA 215 (280)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhhCCC--CeEEEEeCCC----CCHHHHHHHHHHHh
Confidence 45556777888999988554 543 577888888888764323 4457777655 47777777777764
No 310
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=51.58 E-value=3e+02 Score=28.61 Aligned_cols=133 Identities=14% Similarity=0.085 Sum_probs=69.7
Q ss_pred hcccccccccc-ccHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEeeC-CCc
Q 021144 68 GANIIITASYQ-ATIQGFE-AKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVG-SYG 144 (317)
Q Consensus 68 GAdiI~TnTy~-as~~~l~-~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VagsiG-P~g 144 (317)
|++.-..+.|- +|..... ..+.+.+++.+....+|++|++.... ...++.-.++ ||+
T Consensus 115 ~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~~~~--------------------~~~~~~~~~~v~f~ 174 (564)
T TIGR00970 115 GAKRATVHFYNATSILFREVVFRASRAEVQAIATDGTKLVRKCTKQ--------------------AAKYPGTQWRFEYS 174 (564)
T ss_pred CCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccc--------------------ccccccceEEEEEe
Confidence 45433344454 3333332 34788888888888888888765311 0111111111 222
Q ss_pred CccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCC------EE-EeccCC--CHHHHHHHHHHHHHhCCC-ccEEE
Q 021144 145 AYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGAD------LI-AFETIP--NKLEAKAYAELLEEEGIT-IPAWF 214 (317)
Q Consensus 145 ~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD------~l-~~ET~p--~~~Ea~a~~~~~~~~~~~-~pv~i 214 (317)
. .++.+ .+.+-+.+ .++.+.++|++ .| +--|+- ...++...++.+++..++ .++.+
T Consensus 175 ~---------Ed~~r-~d~~~l~~----~~~~a~~ag~~~~~~~~~i~l~DTvG~a~P~~~~~~i~~l~~~~~~~~~~~l 240 (564)
T TIGR00970 175 P---------ESFSD-TELEFAKE----VCEAVKEVWAPTPERPIIFNLPATVEMTTPNVYADSIEYFSTNIAEREKVCL 240 (564)
T ss_pred c---------ccCCC-CCHHHHHH----HHHHHHHhCCCccCCeeEEEeccccCccCHHHHHHHHHHHHHhcCcccCceE
Confidence 1 12222 34444444 45556667653 33 445554 466677777777764222 34778
Q ss_pred EEEEcCCCcccCCCcHHHHHHHhh
Q 021144 215 SFNSKDGINVVSGDSILECASIAD 238 (317)
Q Consensus 215 Sf~~~~~~~l~~G~~l~~a~~~~~ 238 (317)
++-|.++ -|..++.++..+.
T Consensus 241 ~vH~HND----~GlAvANslaAv~ 260 (564)
T TIGR00970 241 SLHPHND----RGTAVAAAELGFL 260 (564)
T ss_pred EEEECCC----CChHHHHHHHHHH
Confidence 9999776 3555555555544
No 311
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=51.53 E-value=1.6e+02 Score=26.18 Aligned_cols=43 Identities=23% Similarity=0.236 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEc
Q 021144 170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSK 219 (317)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~ 219 (317)
.++.++.|.+.|+|.|++- ++ +++.++++.+++.|+++++.+.
T Consensus 4 ~~~~l~~l~~~g~dgi~v~---~~----g~~~~~k~~~~~~~i~~~~~~n 46 (233)
T PF01136_consen 4 LEKYLDKLKELGVDGILVS---NP----GLLELLKELGPDLKIIADYSLN 46 (233)
T ss_pred HHHHHHHHHhCCCCEEEEc---CH----HHHHHHHHhCCCCcEEEecCcc
Confidence 4556778889999999876 34 4566778876679999998663
No 312
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=51.22 E-value=2.2e+02 Score=27.00 Aligned_cols=86 Identities=16% Similarity=0.174 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEE
Q 021144 168 EFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVG 247 (317)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiG 247 (317)
+.|++.++.|.+.|..++++-. . +|.+.+-++.+... .++. +..-+++.+++..+.. .+.+-
T Consensus 195 e~~~~l~~~l~~~~~~Vvl~g~--~-~e~e~~~~i~~~~~--~~~~----------l~~k~sL~e~~~li~~---a~l~I 256 (334)
T COG0859 195 EHYAELAELLIAKGYQVVLFGG--P-DEEERAEEIAKGLP--NAVI----------LAGKTSLEELAALIAG---ADLVI 256 (334)
T ss_pred HHHHHHHHHHHHCCCEEEEecC--h-HHHHHHHHHHHhcC--Cccc----------cCCCCCHHHHHHHHhc---CCEEE
Confidence 4677888999888877787763 2 66666555555433 1111 4456789999988864 34555
Q ss_pred EcCCChhhhHHHHHHHHhhCCCc-EEEEeCCC
Q 021144 248 INCTSPRFIHGLILSVRKVTSKP-VIIYPNSG 278 (317)
Q Consensus 248 vNC~~p~~~~~~l~~l~~~~~~p-l~vyPNaG 278 (317)
-|=|+|.|+..++ ++| +.+|++.-
T Consensus 257 ~~DSg~~HlAaA~-------~~P~I~iyg~t~ 281 (334)
T COG0859 257 GNDSGPMHLAAAL-------GTPTIALYGPTS 281 (334)
T ss_pred ccCChHHHHHHHc-------CCCEEEEECCCC
Confidence 6778888887774 567 78998885
No 313
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=51.20 E-value=1.3e+02 Score=26.44 Aligned_cols=72 Identities=11% Similarity=0.136 Sum_probs=48.4
Q ss_pred EEEeccCC-CHHH--HHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCC---hhhhH
Q 021144 184 LIAFETIP-NKLE--AKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTS---PRFIH 257 (317)
Q Consensus 184 ~l~~ET~p-~~~E--a~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~---p~~~~ 257 (317)
-+++=|++ +.++ ...+...++..| ..|+ .+-...+.++.++.+.+ ..++.||+.|+. ...+.
T Consensus 84 ~vl~~~~~gd~H~lG~~~v~~~l~~~G--~~vi---------~lG~~~p~~~l~~~~~~-~~~d~v~lS~~~~~~~~~~~ 151 (201)
T cd02070 84 KVVIGTVEGDIHDIGKNLVATMLEANG--FEVI---------DLGRDVPPEEFVEAVKE-HKPDILGLSALMTTTMGGMK 151 (201)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHCC--CEEE---------ECCCCCCHHHHHHHHHH-cCCCEEEEeccccccHHHHH
Confidence 45667777 5666 344555677766 3332 13356788899988876 588999999953 46677
Q ss_pred HHHHHHHhhC
Q 021144 258 GLILSVRKVT 267 (317)
Q Consensus 258 ~~l~~l~~~~ 267 (317)
.+++.+++..
T Consensus 152 ~~i~~lr~~~ 161 (201)
T cd02070 152 EVIEALKEAG 161 (201)
T ss_pred HHHHHHHHCC
Confidence 7888887764
No 314
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=51.06 E-value=2.1e+02 Score=26.72 Aligned_cols=148 Identities=18% Similarity=0.087 Sum_probs=77.2
Q ss_pred ChHHHHHHHHHHHHhh-ccccccc-cccccHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCC
Q 021144 53 SPHLVRKVHLDYLDAG-ANIIITA-SYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRIS 130 (317)
Q Consensus 53 ~Pe~V~~iH~~Yl~AG-AdiI~Tn-Ty~as~~~l~~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~ 130 (317)
+.+.+++.-+.++++| ++-|..+ |-+=. .-++.+|-.++++.+++.+.
T Consensus 19 D~~~~~~~i~~~i~~G~v~gi~~~GstGE~------~~Lt~eEr~~~~~~~~~~~~------------------------ 68 (290)
T TIGR00683 19 NEKGLRQIIRHNIDKMKVDGLYVGGSTGEN------FMLSTEEKKEIFRIAKDEAK------------------------ 68 (290)
T ss_pred CHHHHHHHHHHHHhCCCcCEEEECCccccc------ccCCHHHHHHHHHHHHHHhC------------------------
Confidence 4566777777789999 9866544 32211 12455666677666665431
Q ss_pred CCCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCC-----CHHHHHHHHHHHHH
Q 021144 131 SRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIP-----NKLEAKAYAELLEE 205 (317)
Q Consensus 131 ~~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p-----~~~Ea~a~~~~~~~ 205 (317)
++-..|+| +|.. +.++.. ++++...+.|+|.+++ ..| +.+|+..-.+.+.+
T Consensus 69 ~~~pvi~g-v~~~------------------~t~~~i----~la~~a~~~Gad~v~v-~~P~y~~~~~~~i~~yf~~v~~ 124 (290)
T TIGR00683 69 DQIALIAQ-VGSV------------------NLKEAV----ELGKYATELGYDCLSA-VTPFYYKFSFPEIKHYYDTIIA 124 (290)
T ss_pred CCCcEEEe-cCCC------------------CHHHHH----HHHHHHHHhCCCEEEE-eCCcCCCCCHHHHHHHHHHHHh
Confidence 12233444 3321 334443 3566677789999988 334 45555554444433
Q ss_pred hCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCC--hhhhHHHH
Q 021144 206 EGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTS--PRFIHGLI 260 (317)
Q Consensus 206 ~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~--p~~~~~~l 260 (317)
...++|+++-= + ..++...-+.+ .+..+.+. +..+||-.++ +..+..++
T Consensus 125 ~~~~lpv~lYn-~--P~~tg~~l~~~-~i~~L~~~--pnv~giK~s~~d~~~~~~~~ 175 (290)
T TIGR00683 125 ETGGLNMIVYS-I--PFLTGVNMGIE-QFGELYKN--PKVLGVKFTAGDFYLLERLK 175 (290)
T ss_pred hCCCCCEEEEe-C--ccccccCcCHH-HHHHHhcC--CCEEEEEeCCCCHHHHHHHH
Confidence 22258988531 1 11221222333 33344333 4577777653 44444443
No 315
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=50.96 E-value=1.8e+02 Score=25.71 Aligned_cols=78 Identities=15% Similarity=0.123 Sum_probs=45.3
Q ss_pred HHHHHHhCCCCEEEecc-CCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCC
Q 021144 173 RVLILANSGADLIAFET-IPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT 251 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET-~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~ 251 (317)
+++.+.+.|+|.+++=+ .....+++.+++..+..+ +.+++.+. +.+++.+... .+++.+|+|=.
T Consensus 86 ~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g--~~~~v~v~-----------~~~e~~~~~~--~g~~~i~~t~~ 150 (217)
T cd00331 86 QIYEARAAGADAVLLIVAALDDEQLKELYELARELG--MEVLVEVH-----------DEEELERALA--LGAKIIGINNR 150 (217)
T ss_pred HHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcC--CeEEEEEC-----------CHHHHHHHHH--cCCCEEEEeCC
Confidence 57788889999997533 233467777777766655 44444441 3444444333 46788888832
Q ss_pred C----hhhhHHHHHHHHhh
Q 021144 252 S----PRFIHGLILSVRKV 266 (317)
Q Consensus 252 ~----p~~~~~~l~~l~~~ 266 (317)
. +... ..++++++.
T Consensus 151 ~~~~~~~~~-~~~~~l~~~ 168 (217)
T cd00331 151 DLKTFEVDL-NTTERLAPL 168 (217)
T ss_pred CccccCcCH-HHHHHHHHh
Confidence 1 1111 455666654
No 316
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=50.91 E-value=2.4e+02 Score=27.18 Aligned_cols=113 Identities=12% Similarity=0.071 Sum_probs=65.2
Q ss_pred CCCHHH---HHHHHHHHHHHHHhCCCCEEEeccC--------CC-------------H-HH---HHHHHHHHHHh-CCCc
Q 021144 160 AVSLET---LKEFHRRRVLILANSGADLIAFETI--------PN-------------K-LE---AKAYAELLEEE-GITI 210 (317)
Q Consensus 160 ~~s~~e---l~~~h~~qi~~l~~~gvD~l~~ET~--------p~-------------~-~E---a~a~~~~~~~~-~~~~ 210 (317)
.++.+| +.+.|..-++...++|.|.|=+=.- -| + .. +..+++++|+. +.+
T Consensus 141 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d- 219 (338)
T cd02933 141 ALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGAD- 219 (338)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCC-
Confidence 466555 5667777777888899999944211 11 0 12 33455666664 323
Q ss_pred cEEEEEEEcCCC-cccCCCcHHHHHHHh---hcCCCceEEEEcCCC-----hhhhHHHHHHHHhhCCCcEEEE
Q 021144 211 PAWFSFNSKDGI-NVVSGDSILECASIA---DSCEQVVAVGINCTS-----PRFIHGLILSVRKVTSKPVIIY 274 (317)
Q Consensus 211 pv~iSf~~~~~~-~l~~G~~l~~a~~~~---~~~~~~~aiGvNC~~-----p~~~~~~l~~l~~~~~~pl~vy 274 (317)
|+++-++..+.. ....|.++++.++.+ .+ .+++.|-|.+.. +......++.+++.++.|+++-
T Consensus 220 ~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~-~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~ 291 (338)
T cd02933 220 RVGIRLSPFGTFNDMGDSDPEATFSYLAKELNK-RGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIAA 291 (338)
T ss_pred ceEEEECccccCCCCCCCCCHHHHHHHHHHHHH-cCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEEE
Confidence 666666544321 112355777655443 33 467877775542 1245567777888888897764
No 317
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=50.90 E-value=2.1e+02 Score=26.58 Aligned_cols=142 Identities=18% Similarity=0.119 Sum_probs=75.9
Q ss_pred ChHHHHHHHHHHHHhhccccccccccccHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCC
Q 021144 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSR 132 (317)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~ 132 (317)
+.+.+++.-+.+++.|.+-|..|--..-.. -++.+|-.++++.+++.+. ++
T Consensus 20 D~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~-----~ls~~Er~~~~~~~~~~~~------------------------~~ 70 (292)
T PRK03170 20 DFAALRKLVDYLIANGTDGLVVVGTTGESP-----TLTHEEHEELIRAVVEAVN------------------------GR 70 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcCCccc-----cCCHHHHHHHHHHHHHHhC------------------------CC
Confidence 456778888888889999777553222211 3465666666555554321 12
Q ss_pred CeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecc----CCCHHHHHHHHHHHHHhCC
Q 021144 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFET----IPNKLEAKAYAELLEEEGI 208 (317)
Q Consensus 133 ~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET----~p~~~Ea~a~~~~~~~~~~ 208 (317)
-.+|+| +|.. +.++..+ +++...+.|+|.+++=. -++-+|+..-.+.+.+..
T Consensus 71 ~~vi~g-v~~~------------------~~~~~i~----~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~- 126 (292)
T PRK03170 71 VPVIAG-TGSN------------------STAEAIE----LTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEAT- 126 (292)
T ss_pred CcEEee-cCCc------------------hHHHHHH----HHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcC-
Confidence 234554 3321 3344333 57777889999887732 124455555454444433
Q ss_pred CccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCCh
Q 021144 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSP 253 (317)
Q Consensus 209 ~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~p 253 (317)
++|+++-= +.. ..-..-+++ .+..+.+. +..+|+-.+++
T Consensus 127 ~~pv~lYn-~P~--~~g~~l~~~-~~~~L~~~--p~v~giK~s~~ 165 (292)
T PRK03170 127 DLPIILYN-VPG--RTGVDILPE-TVARLAEH--PNIVGIKEATG 165 (292)
T ss_pred CCCEEEEE-Ccc--ccCCCCCHH-HHHHHHcC--CCEEEEEECCC
Confidence 58988642 211 111123343 44444433 45677776643
No 318
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=50.80 E-value=65 Score=30.41 Aligned_cols=62 Identities=13% Similarity=0.186 Sum_probs=42.9
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcC
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC 250 (317)
++...+++|+|.|.+..|+ .++++.++..++. .. .+.. .-|-++..+.+++. .+++.|-+-.
T Consensus 205 e~~ea~~~gaDiImLDn~s-~e~l~~av~~~~~---~~--~lea--------SGgI~~~ni~~yA~--tGVD~Is~ga 266 (281)
T PRK06543 205 QIEPVLAAGVDTIMLDNFS-LDDLREGVELVDG---RA--IVEA--------SGNVNLNTVGAIAS--TGVDVISVGA 266 (281)
T ss_pred HHHHHHhcCCCEEEECCCC-HHHHHHHHHHhCC---Ce--EEEE--------ECCCCHHHHHHHHh--cCCCEEEeCc
Confidence 4444567999999999986 8888888886653 12 2222 24678888877765 5788776655
No 319
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=50.51 E-value=2.1e+02 Score=26.50 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhCCCCEEEec-cCC--CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhc
Q 021144 168 EFHRRRVLILANSGADLIAFE-TIP--NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS 239 (317)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~E-T~p--~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~ 239 (317)
+++.+.++.+.+.|+|.|.+= |+- ...++...++.+++..++ +-++|-+.++ .|..++.++..+..
T Consensus 151 ~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~--~~l~~H~Hnd----~Gla~An~laA~~a 219 (273)
T cd07941 151 EYALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERLPG--VPLGIHAHND----SGLAVANSLAAVEA 219 (273)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCC--CeeEEEecCC----CCcHHHHHHHHHHc
Confidence 345566777788999988654 543 577888888888875323 5567766655 47788888877764
No 320
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=50.23 E-value=1.3e+02 Score=27.60 Aligned_cols=78 Identities=10% Similarity=-0.022 Sum_probs=50.4
Q ss_pred HHHHHHhCCCCEEEecc---CCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEc
Q 021144 173 RVLILANSGADLIAFET---IPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGIN 249 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET---~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvN 249 (317)
.++.+...|-|++++.+ .-+..++..++.+++..+ .+.+|-+. +. +...+-+.++ .++.+|-+-
T Consensus 25 ~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g--~~~~VRvp--------~~-~~~~i~r~LD--~Ga~gIivP 91 (249)
T TIGR03239 25 TTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSA--SAPVVRPP--------WN-EPVIIKRLLD--IGFYNFLIP 91 (249)
T ss_pred HHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcC--CCcEEECC--------CC-CHHHHHHHhc--CCCCEEEec
Confidence 46677789999999984 457888888888888655 66665552 22 2333334443 467777776
Q ss_pred CC-ChhhhHHHHHHH
Q 021144 250 CT-SPRFIHGLILSV 263 (317)
Q Consensus 250 C~-~p~~~~~~l~~l 263 (317)
.+ .++.+..+++..
T Consensus 92 ~v~taeea~~~v~a~ 106 (249)
T TIGR03239 92 FVESAEEAERAVAAT 106 (249)
T ss_pred CcCCHHHHHHHHHHc
Confidence 65 466666665543
No 321
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=50.14 E-value=2e+02 Score=26.23 Aligned_cols=79 Identities=14% Similarity=0.045 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCChh---hhHHHHHHHHhhC
Q 021144 191 PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPR---FIHGLILSVRKVT 267 (317)
Q Consensus 191 p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~p~---~~~~~l~~l~~~~ 267 (317)
.+.+-+..+++++++. ++||++-+.... +.....+.++.+.+ .++++|-|.|--+. .-...|+++++..
T Consensus 118 ~dp~~l~~iv~av~~~--~~PVsvKiR~~~-----~~~~~~~~a~~l~~-aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~ 189 (231)
T TIGR00736 118 KNKELLKEFLTKMKEL--NKPIFVKIRGNC-----IPLDELIDALNLVD-DGFDGIHVDAMYPGKPYADMDLLKILSEEF 189 (231)
T ss_pred CCHHHHHHHHHHHHcC--CCcEEEEeCCCC-----CcchHHHHHHHHHH-cCCCEEEEeeCCCCCchhhHHHHHHHHHhc
Confidence 3666677788888854 489887775422 22334466666665 58999999885332 3467788888876
Q ss_pred C-CcEEEEeCCCC
Q 021144 268 S-KPVIIYPNSGE 279 (317)
Q Consensus 268 ~-~pl~vyPNaG~ 279 (317)
+ .|+ -.|+|-
T Consensus 190 ~~ipI--IgNGgI 200 (231)
T TIGR00736 190 NDKII--IGNNSI 200 (231)
T ss_pred CCCcE--EEECCc
Confidence 3 664 457763
No 322
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=50.01 E-value=85 Score=29.57 Aligned_cols=28 Identities=14% Similarity=0.116 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhhccccccccccccHH
Q 021144 55 HLVRKVHLDYLDAGANIIITASYQATIQ 82 (317)
Q Consensus 55 e~V~~iH~~Yl~AGAdiI~TnTy~as~~ 82 (317)
+...+.|.+.-+-|+-+|+|-.-..++.
T Consensus 33 ~~~~~~y~~ra~gg~glii~e~~~v~~~ 60 (327)
T cd02803 33 DELIEYYEERAKGGVGLIITEAAYVDPE 60 (327)
T ss_pred HHHHHHHHHHhCcCCcEEEECcEEEcCc
Confidence 4555666666666777666554444443
No 323
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=49.57 E-value=1.1e+02 Score=30.15 Aligned_cols=72 Identities=14% Similarity=0.199 Sum_probs=43.4
Q ss_pred HHHHHHHHHhCCCCEEEecc-C--------------CCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHH
Q 021144 170 HRRRVLILANSGADLIAFET-I--------------PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECA 234 (317)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET-~--------------p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~ 234 (317)
|.+.++.+.+.|+|.|=+-- . .+.+.+..+++++++.. ++|+|+-++- +-+.+.+.+
T Consensus 129 ~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~-~iPv~vKLsP-------n~t~i~~ia 200 (385)
T PLN02495 129 WEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKA-TVPVWAKMTP-------NITDITQPA 200 (385)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhh-cCceEEEeCC-------ChhhHHHHH
Confidence 34445556678999986532 1 23455667778887764 6999999863 223466666
Q ss_pred HHhhcCCCceE-EEEcC
Q 021144 235 SIADSCEQVVA-VGINC 250 (317)
Q Consensus 235 ~~~~~~~~~~a-iGvNC 250 (317)
+.+.+ .++++ +.+|-
T Consensus 201 ~aa~~-~Gadgi~liNT 216 (385)
T PLN02495 201 RVALK-SGCEGVAAINT 216 (385)
T ss_pred HHHHH-hCCCEEEEecc
Confidence 65544 24443 33443
No 324
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=49.50 E-value=1.5e+02 Score=27.78 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=52.6
Q ss_pred HHHHHHHHhCCCCEEEec-cCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEc
Q 021144 171 RRRVLILANSGADLIAFE-TIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGIN 249 (317)
Q Consensus 171 ~~qi~~l~~~gvD~l~~E-T~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvN 249 (317)
...+++..+.|+.+.+-+ +-.+.++++ +.. +.|+|+.+....+ -....+.++.+.. .++++|-+|
T Consensus 84 ~~la~aa~~~g~~~~~~~~~~~~~~~i~-------~~~-~~~~~~ql~~~~~-----~~~~~~~i~~~~~-~g~~~i~l~ 149 (299)
T cd02809 84 LATARAAAAAGIPFTLSTVSTTSLEEVA-------AAA-PGPRWFQLYVPRD-----REITEDLLRRAEA-AGYKALVLT 149 (299)
T ss_pred HHHHHHHHHcCCCEEecCCCcCCHHHHH-------Hhc-CCCeEEEEeecCC-----HHHHHHHHHHHHH-cCCCEEEEe
Confidence 345566677888886644 434444433 222 2789988854311 1223455555554 467776665
Q ss_pred CCChh----hhHHHHHHHHhhCCCcEEEE
Q 021144 250 CTSPR----FIHGLILSVRKVTSKPVIIY 274 (317)
Q Consensus 250 C~~p~----~~~~~l~~l~~~~~~pl~vy 274 (317)
+..|. .....++++++.++.|+++.
T Consensus 150 ~~~p~~~~~~~~~~i~~l~~~~~~pvivK 178 (299)
T cd02809 150 VDTPVLGRRLTWDDLAWLRSQWKGPLILK 178 (299)
T ss_pred cCCCCCCCCCCHHHHHHHHHhcCCCEEEe
Confidence 54332 22356788888778898877
No 325
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=49.23 E-value=1.7e+02 Score=25.44 Aligned_cols=84 Identities=13% Similarity=0.062 Sum_probs=49.7
Q ss_pred HHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCC
Q 021144 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT 251 (317)
Q Consensus 172 ~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~ 251 (317)
++++.+.+.|+|++..- ... ..++++.++.+ .|+++.. .+++++.+.++ .+++.|++-=.
T Consensus 67 ~~~~~a~~~Ga~~i~~p---~~~--~~~~~~~~~~~--~~~i~gv-----------~t~~e~~~A~~--~Gad~i~~~p~ 126 (190)
T cd00452 67 EQADAAIAAGAQFIVSP---GLD--PEVVKAANRAG--IPLLPGV-----------ATPTEIMQALE--LGADIVKLFPA 126 (190)
T ss_pred HHHHHHHHcCCCEEEcC---CCC--HHHHHHHHHcC--CcEECCc-----------CCHHHHHHHHH--CCCCEEEEcCC
Confidence 35677777999999743 222 24555555543 6776422 37788877765 47888887533
Q ss_pred ChhhhHHHHHHHHhhC-CCcEEEEeCCC
Q 021144 252 SPRFIHGLILSVRKVT-SKPVIIYPNSG 278 (317)
Q Consensus 252 ~p~~~~~~l~~l~~~~-~~pl~vyPNaG 278 (317)
++. -...++.++... +.|+ .|=+|
T Consensus 127 ~~~-g~~~~~~l~~~~~~~p~--~a~GG 151 (190)
T cd00452 127 EAV-GPAYIKALKGPFPQVRF--MPTGG 151 (190)
T ss_pred ccc-CHHHHHHHHhhCCCCeE--EEeCC
Confidence 333 455677776543 3443 34444
No 326
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=48.83 E-value=2.2e+02 Score=26.27 Aligned_cols=68 Identities=18% Similarity=0.263 Sum_probs=37.9
Q ss_pred HHHHHHhCCCCEEEeccCC-CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhc----CCCceEEE
Q 021144 173 RVLILANSGADLIAFETIP-NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS----CEQVVAVG 247 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p-~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~----~~~~~aiG 247 (317)
.++.|.+.|+|++-+|... ++.|+ .++.+ ....+...+.+. +..|+. +++.+.++. ...-..++
T Consensus 213 ~~~~l~~~~~d~~~~d~~~~d~~~~------~~~~~--~~~~i~Ggv~~~--~~~~~~-e~i~~~v~~~l~~~~~~~il~ 281 (306)
T cd00465 213 LLEEMIQLGVDVISFDMTVNEPKEA------IEKVG--EKKTLVGGVDPG--YLPATD-EECIAKVEELVERLGPHYIIN 281 (306)
T ss_pred HHHHHHHhCcceEecccccCCHHHH------HHHhC--CCEEEECCCCcc--ccCCCH-HHHHHHHHHHHHHhCCCeEEe
Confidence 4666777899999999775 55554 23333 223344444443 345654 544444332 11135677
Q ss_pred EcCC
Q 021144 248 INCT 251 (317)
Q Consensus 248 vNC~ 251 (317)
-+|.
T Consensus 282 ~~cg 285 (306)
T cd00465 282 PDCG 285 (306)
T ss_pred CCCC
Confidence 7885
No 327
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=48.82 E-value=2.6e+02 Score=30.12 Aligned_cols=57 Identities=21% Similarity=0.190 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEec-----cCCCHHHHHHHHHHHHHhC---CCccEEEEEEEc
Q 021144 163 LETLKEFHRRRVLILANSGADLIAFE-----TIPNKLEAKAYAELLEEEG---ITIPAWFSFNSK 219 (317)
Q Consensus 163 ~~el~~~h~~qi~~l~~~gvD~l~~E-----T~p~~~Ea~a~~~~~~~~~---~~~pv~iSf~~~ 219 (317)
.+++...|.+.++.|.++||+.|=+. +=+...+..++.++.+... .+.++++...|.
T Consensus 173 l~~L~~~y~~~l~~L~~~G~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~ki~l~tyFg 237 (750)
T TIGR01371 173 LEKLLPVYKEVLKKLAEAGATWVQIDEPALVTDLSKEDLAAFKEAYTELSEALSGLKLLLQTYFD 237 (750)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEeeCchhcCCCCHHHHHHHHHHHHHHHhccCCceEEEECCCC
Confidence 45688899999999999999987332 2223335555555554431 135666666554
No 328
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=48.71 E-value=2e+02 Score=25.80 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=43.9
Q ss_pred HHHHHHHHHhCCCCEEEec-c--CCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhc
Q 021144 170 HRRRVLILANSGADLIAFE-T--IPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS 239 (317)
Q Consensus 170 h~~qi~~l~~~gvD~l~~E-T--~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~ 239 (317)
+.+.++.+.+.|+|.|.+- | ..+..++..+++.+++..++ +.++|-+.++ .|..+..++..+..
T Consensus 148 l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~--~~~~~H~Hn~----~gla~an~laA~~a 214 (265)
T cd03174 148 VLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREALPD--VPLGLHTHNT----LGLAVANSLAALEA 214 (265)
T ss_pred HHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCC--CeEEEEeCCC----CChHHHHHHHHHHc
Confidence 3445666778899988663 2 34678888888888875422 6777777665 47777877777763
No 329
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=48.69 E-value=2.6e+02 Score=27.04 Aligned_cols=236 Identities=14% Similarity=0.156 Sum_probs=110.4
Q ss_pred ecchHHHHHHCCCCCCCccccccccCCChHHHHHHHHHHHHhhccccccccccccHHHHHhCCCCHHHHHHHHHHHHHHH
Q 021144 26 DGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIA 105 (317)
Q Consensus 26 DGgmgT~L~~~G~~~~~~lws~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA 105 (317)
|=.+-+++|+.|....+.- -.+.-+.++.+ +.|++.|+-=.|- +|.. .|... ....+++|
T Consensus 5 DiS~~~~~E~~G~~f~~~~-------G~~~d~~~ilk---~~G~N~vRlRvwv-~P~~---~g~~~------~~~~~~~a 64 (332)
T PF07745_consen 5 DISSLPEMEAAGVKFYDEN-------GQEKDLFQILK---DHGVNAVRLRVWV-NPYD---GGYND------LEDVIALA 64 (332)
T ss_dssp E-TTHHHHHHTT---B-TT-------SSB--HHHHHH---HTT--EEEEEE-S-S-TT---TTTTS------HHHHHHHH
T ss_pred eHHHHHHHHHcCCeEECCC-------CCCCCHHHHHH---hcCCCeEEEEecc-CCcc---cccCC------HHHHHHHH
Confidence 3455678888887532211 01122334433 4899988765543 2222 23321 23567788
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEeeCCCcCcc-CCCCCCCCCCCCCCCHHHHH----HHHHHHHHHHHhC
Q 021144 106 CEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYL-ADGSEYSGDYGDAVSLETLK----EFHRRRVLILANS 180 (317)
Q Consensus 106 r~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~l-~~gseY~g~y~~~~s~~el~----~~h~~qi~~l~~~ 180 (317)
|+|.+. +-++++ ++- |.++- .||.-..|.--...+.+++. ++=++-++.|.++
T Consensus 65 krak~~-------------------Gm~vll--dfH-YSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~ 122 (332)
T PF07745_consen 65 KRAKAA-------------------GMKVLL--DFH-YSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAA 122 (332)
T ss_dssp HHHHHT-------------------T-EEEE--EE--SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHC-------------------CCeEEE--eec-ccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 888642 223333 332 43332 24444444444445666544 5556667888888
Q ss_pred CC--CEEEe--cc----------CCCHHHH----HHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhc-CC
Q 021144 181 GA--DLIAF--ET----------IPNKLEA----KAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS-CE 241 (317)
Q Consensus 181 gv--D~l~~--ET----------~p~~~Ea----~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~-~~ 241 (317)
|+ |++-+ |+ .++..-+ .+.++++|+..++.+|++.+.-.. +-..+.--+..+.. ..
T Consensus 123 G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~-----~~~~~~~~f~~l~~~g~ 197 (332)
T PF07745_consen 123 GVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGG-----DNDLYRWFFDNLKAAGV 197 (332)
T ss_dssp T--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TT-----SHHHHHHHHHHHHHTTG
T ss_pred CCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCC-----chHHHHHHHHHHHhcCC
Confidence 86 66632 21 2233322 345678888777788888774211 11122333444433 23
Q ss_pred CceEEEEcCC---C--hhhhHHHHHHHHhhCCCcEE----EEeCCCCccccccccc-----cccCCCChhhHHHHHHHHH
Q 021144 242 QVVAVGINCT---S--PRFIHGLILSVRKVTSKPVI----IYPNSGETYNAELKKW-----VVSFSLHFFPLELILNPFA 307 (317)
Q Consensus 242 ~~~aiGvNC~---~--p~~~~~~l~~l~~~~~~pl~----vyPNaG~~~d~~~~~w-----~~~~~~~~~~~~~~~~~w~ 307 (317)
..+.||++.= + ...+...++.|+...++|++ .||..-.--|...... ...++.+|+.-+.++...+
T Consensus 198 d~DviGlSyYP~w~~~l~~l~~~l~~l~~ry~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~ 277 (332)
T PF07745_consen 198 DFDVIGLSYYPFWHGTLEDLKNNLNDLASRYGKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLI 277 (332)
T ss_dssp G-SEEEEEE-STTST-HHHHHHHHHHHHHHHT-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHH
T ss_pred CcceEEEecCCCCcchHHHHHHHHHHHHHHhCCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHH
Confidence 4689999983 2 35666777777766688875 4776632222221111 1234567776666655554
Q ss_pred H
Q 021144 308 S 308 (317)
Q Consensus 308 ~ 308 (317)
+
T Consensus 278 ~ 278 (332)
T PF07745_consen 278 N 278 (332)
T ss_dssp H
T ss_pred H
Confidence 4
No 330
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=48.68 E-value=2.6e+02 Score=26.96 Aligned_cols=111 Identities=12% Similarity=0.141 Sum_probs=66.8
Q ss_pred CCCHHH---HHHHHHHHHHHHHhCCCCEEEeccC----------C-----------CH-HHHH---HHHHHHHHhCCCcc
Q 021144 160 AVSLET---LKEFHRRRVLILANSGADLIAFETI----------P-----------NK-LEAK---AYAELLEEEGITIP 211 (317)
Q Consensus 160 ~~s~~e---l~~~h~~qi~~l~~~gvD~l~~ET~----------p-----------~~-~Ea~---a~~~~~~~~~~~~p 211 (317)
.+|.+| +.+.|..-++...++|.|.+=+=.- | ++ ..++ .+++++++.. +.|
T Consensus 131 ~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~-~~~ 209 (337)
T PRK13523 131 EMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW-DGP 209 (337)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc-CCC
Confidence 467665 5556777777778899999954322 1 11 1223 4556666654 567
Q ss_pred EEEEEEEcCCCcccCCCcHHHHHHHhhc--CCCceEEEEcCCC---------hhhhHHHHHHHHhhCCCcEEE
Q 021144 212 AWFSFNSKDGINVVSGDSILECASIADS--CEQVVAVGINCTS---------PRFIHGLILSVRKVTSKPVII 273 (317)
Q Consensus 212 v~iSf~~~~~~~l~~G~~l~~a~~~~~~--~~~~~aiGvNC~~---------p~~~~~~l~~l~~~~~~pl~v 273 (317)
+.+-++..+ ....|.++++.+..+.. ..+++.|-|-... +..-..+.+.+++..+.|+++
T Consensus 210 v~vRis~~d--~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~ 280 (337)
T PRK13523 210 LFVRISASD--YHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGA 280 (337)
T ss_pred eEEEecccc--cCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEE
Confidence 777776543 23468788876654421 2467777665532 111245677888888888665
No 331
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=48.43 E-value=53 Score=30.43 Aligned_cols=48 Identities=21% Similarity=0.133 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEE
Q 021144 169 FHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNS 218 (317)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~ 218 (317)
.|.+.+...++.|+.++.--|=.+.+|++.+.+++++.+ +|++++..+
T Consensus 80 ~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g--~~v~~a~Nf 127 (266)
T TIGR00036 80 GVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAG--IAAVIAPNF 127 (266)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCC--ccEEEECcc
Confidence 567788888889999998666667778888888877754 888887755
No 332
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=48.38 E-value=2e+02 Score=27.69 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=61.2
Q ss_pred HHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhC-CCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEc
Q 021144 171 RRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEG-ITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGIN 249 (317)
Q Consensus 171 ~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~-~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvN 249 (317)
++.++.+.+.|-=.++.+ + +.++...- +++.. ..+++.+|.-..+ +.++.+...++....+++|.+-
T Consensus 48 ~~LA~~a~~~G~~~i~hK-~-~~E~~~sf---vrk~k~~~L~v~~SvG~t~-------e~~~r~~~lv~a~~~~d~i~~D 115 (321)
T TIGR01306 48 EKLAEQLAENGYFYIMHR-F-DEESRIPF---IKDMQERGLFASISVGVKA-------CEYEFVTQLAEEALTPEYITID 115 (321)
T ss_pred HHHHHHHHHcCCEEEEec-C-CHHHHHHH---HHhccccccEEEEEcCCCH-------HHHHHHHHHHhcCCCCCEEEEe
Confidence 345666777788888888 4 66665543 34432 1245555542211 1233445555543337899999
Q ss_pred CCC--hhhhHHHHHHHHhhCCCcEEEEeCCC
Q 021144 250 CTS--PRFIHGLILSVRKVTSKPVIIYPNSG 278 (317)
Q Consensus 250 C~~--p~~~~~~l~~l~~~~~~pl~vyPNaG 278 (317)
.++ ...+...++.+++..+.|+++-.|-+
T Consensus 116 ~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~ 146 (321)
T TIGR01306 116 IAHGHSNSVINMIKHIKTHLPDSFVIAGNVG 146 (321)
T ss_pred CccCchHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 874 57888899999998888889999876
No 333
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=47.83 E-value=1.4e+02 Score=27.96 Aligned_cols=129 Identities=13% Similarity=0.053 Sum_probs=68.0
Q ss_pred HHHHHHhCCCCEEEec------------cCC-CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHH----HHH
Q 021144 173 RVLILANSGADLIAFE------------TIP-NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILE----CAS 235 (317)
Q Consensus 173 qi~~l~~~gvD~l~~E------------T~p-~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~----a~~ 235 (317)
-++.+.++|+|+|++- |+| +++|+.--.+++++-.++..+++-+-+-. ...+.++ |.+
T Consensus 28 ~A~~~d~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~DmPf~s-----y~~s~e~av~nA~r 102 (261)
T PF02548_consen 28 SARIADEAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVADMPFGS-----YQASPEQAVRNAGR 102 (261)
T ss_dssp HHHHHHHTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-TSSEEEEE--TTS-----STSSHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhcCCCceEEecCCccc-----ccCCHHHHHHHHHH
Confidence 3566777999999863 444 57777777777776543455555554422 2234444 445
Q ss_pred HhhcCCCceEEEEcCCChhhhHHHHHHHHhhCCCcEEEEeCCCCccccccccccccC------CCChhhHHHHHHHHHHc
Q 021144 236 IADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVVSF------SLHFFPLELILNPFASC 309 (317)
Q Consensus 236 ~~~~~~~~~aiGvNC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~w~~~~------~~~~~~~~~~~~~w~~~ 309 (317)
.+.+ .++++|=+-+.. .+.++++.|.+. .+|++ ..-|.+ +.+..|...+ ..+...+.+.++..-++
T Consensus 103 l~ke-~GadaVKlEGg~--~~~~~i~~l~~~-GIPV~--gHiGLt--PQ~~~~~GGyr~qGk~~~~a~~l~~~A~ale~A 174 (261)
T PF02548_consen 103 LMKE-AGADAVKLEGGA--EIAETIKALVDA-GIPVM--GHIGLT--PQSVHQLGGYRVQGKTAEEAEKLLEDAKALEEA 174 (261)
T ss_dssp HHHT-TT-SEEEEEBSG--GGHHHHHHHHHT-T--EE--EEEES---GGGHHHHTSS--CSTSHHHHHHHHHHHHHHHHH
T ss_pred HHHh-cCCCEEEeccch--hHHHHHHHHHHC-CCcEE--EEecCc--hhheeccCCceEEecCHHHHHHHHHHHHHHHHc
Confidence 5554 588888877764 456667776653 67743 222321 1111111111 12345677778888888
Q ss_pred ccccc
Q 021144 310 RLISF 314 (317)
Q Consensus 310 ~~~~~ 314 (317)
|...+
T Consensus 175 Gaf~i 179 (261)
T PF02548_consen 175 GAFAI 179 (261)
T ss_dssp T-SEE
T ss_pred CccEE
Confidence 87654
No 334
>PRK04302 triosephosphate isomerase; Provisional
Probab=47.80 E-value=1.8e+02 Score=25.99 Aligned_cols=45 Identities=13% Similarity=0.082 Sum_probs=26.1
Q ss_pred HHHHHHhCCCCEEEeccC-----------CCHHHHHHHHHHHHHhCCCccEEEEEE
Q 021144 173 RVLILANSGADLIAFETI-----------PNKLEAKAYAELLEEEGITIPAWFSFN 217 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~-----------p~~~Ea~a~~~~~~~~~~~~pv~iSf~ 217 (317)
|++.+.+.+.|+|.+|-. .....+..+++.+++...+.|++.-+.
T Consensus 126 ~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~Ggg 181 (223)
T PRK04302 126 TSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAG 181 (223)
T ss_pred HHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECC
Confidence 344455567888877642 234455666666666433467776553
No 335
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=47.79 E-value=81 Score=30.55 Aligned_cols=70 Identities=20% Similarity=0.252 Sum_probs=41.3
Q ss_pred CeEEEEeeCCCcCccCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCcc
Q 021144 133 PVLVAASVGSYGAYLADGSEYSGDYGDA-VSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIP 211 (317)
Q Consensus 133 ~~~VagsiGP~g~~l~~gseY~g~y~~~-~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~p 211 (317)
.+-|.|=||=..-... +.|.|.-+ -+.+++.+ -.++++.|.++|++.|++|-+|+. -++.|.+ +. ++|
T Consensus 151 GIPV~gHiGLtPQs~~----~lGGykvqGr~~~~a~~-li~dA~ale~AGAf~ivLE~Vp~~-la~~It~---~l--~IP 219 (332)
T PLN02424 151 GIAVMGHVGLTPQAIS----VLGGFRPQGRTAESAVK-VVETALALQEAGCFAVVLECVPAP-VAAAITS---AL--QIP 219 (332)
T ss_pred CCCEEEeecccceeeh----hhcCccccCCCHHHHHH-HHHHHHHHHHcCCcEEEEcCCcHH-HHHHHHH---hC--CCC
Confidence 3456776665433221 12233211 25555555 445789999999999999999976 3444333 22 377
Q ss_pred EE
Q 021144 212 AW 213 (317)
Q Consensus 212 v~ 213 (317)
++
T Consensus 220 tI 221 (332)
T PLN02424 220 TI 221 (332)
T ss_pred EE
Confidence 76
No 336
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=47.73 E-value=1.6e+02 Score=30.32 Aligned_cols=86 Identities=13% Similarity=0.132 Sum_probs=55.3
Q ss_pred HHHHHHHHhCCCccEEEEEEEcCC-------C----------cccCCCcHHHHHHHh----hcCCCceEEEEcCCChhhh
Q 021144 198 AYAELLEEEGITIPAWFSFNSKDG-------I----------NVVSGDSILECASIA----DSCEQVVAVGINCTSPRFI 256 (317)
Q Consensus 198 a~~~~~~~~~~~~pv~iSf~~~~~-------~----------~l~~G~~l~~a~~~~----~~~~~~~aiGvNC~~p~~~ 256 (317)
+|..++++ ++||+|.+.++-. + +..+-+..++++..+ .....+..++=-|+.+..+
T Consensus 152 aI~~~~~~---~rPVYi~iP~n~~~~~~~~~~l~~~p~~~~~~~s~~e~~~~~v~~i~e~i~~~~~Pvil~~~~~~r~~~ 228 (561)
T KOG1184|consen 152 AIRTALKE---SKPVYIGVPANLADLPVPAFGLLPVPLDLSPKPSNKEGLEEAVDAILELINKAKKPVILGDPKLRRAKA 228 (561)
T ss_pred HHHHHHHh---cCCeEEEeecccccCcCCcccCCCCCcccCCCCCcHHHHHHHHHHHHHHhhhccCCeeeccccccHHHH
Confidence 34444554 4899999876421 1 011112233444443 2334567777789888888
Q ss_pred HHHHHHHHhhCCCcEEEEeCCCCccccccc
Q 021144 257 HGLILSVRKVTSKPVIIYPNSGETYNAELK 286 (317)
Q Consensus 257 ~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~ 286 (317)
.....++...+..|+.+.|.+--.+|..+.
T Consensus 229 ~~~~~~l~~~~~~p~~vtp~gKg~i~E~hp 258 (561)
T KOG1184|consen 229 ESAFVELADATGFPVFVTPMGKGFIPESHP 258 (561)
T ss_pred HHHHHHHHHhhCCCeeEeecccccccCcCC
Confidence 999999999999999999998654454433
No 337
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=47.16 E-value=3.3e+02 Score=29.29 Aligned_cols=112 Identities=12% Similarity=0.107 Sum_probs=65.6
Q ss_pred CCCHHH---HHHHHHHHHHHHHhCCCCEEEeccC----------C-----------C----HHHHHHHHHHHHHh-CCCc
Q 021144 160 AVSLET---LKEFHRRRVLILANSGADLIAFETI----------P-----------N----KLEAKAYAELLEEE-GITI 210 (317)
Q Consensus 160 ~~s~~e---l~~~h~~qi~~l~~~gvD~l~~ET~----------p-----------~----~~Ea~a~~~~~~~~-~~~~ 210 (317)
+++.+| +.+.|..-++...++|.|.|=+=-- | + ..=+..+++++++. +.+.
T Consensus 540 ~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~ 619 (765)
T PRK08255 540 EMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEK 619 (765)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCC
Confidence 467666 5556777777777899999944211 1 1 22234566667765 3456
Q ss_pred cEEEEEEEcCCCcccCCCcHHHHHHHh---hcCCCceEEEEcCC--Ch--------hhhHHHHHHHHhhCCCcEEEE
Q 021144 211 PAWFSFNSKDGINVVSGDSILECASIA---DSCEQVVAVGINCT--SP--------RFIHGLILSVRKVTSKPVIIY 274 (317)
Q Consensus 211 pv~iSf~~~~~~~l~~G~~l~~a~~~~---~~~~~~~aiGvNC~--~p--------~~~~~~l~~l~~~~~~pl~vy 274 (317)
|+.+-++..+ ....|.++++.+..+ .+ .+++.|-|-+. .. .....+.+.+++..+.|+++-
T Consensus 620 ~v~~ri~~~~--~~~~g~~~~~~~~~~~~l~~-~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~ 693 (765)
T PRK08255 620 PMSVRISAHD--WVEGGNTPDDAVEIARAFKA-AGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAV 693 (765)
T ss_pred eeEEEEcccc--ccCCCCCHHHHHHHHHHHHh-cCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEe
Confidence 7777776533 234577777665443 33 46777766432 11 122455667777778887663
No 338
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=47.06 E-value=41 Score=31.56 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhCCCCEEEec--cCCCHHHHHHHHHHHHHhCCCccEEEEE
Q 021144 169 FHRRRVLILANSGADLIAFE--TIPNKLEAKAYAELLEEEGITIPAWFSF 216 (317)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~E--T~p~~~Ea~a~~~~~~~~~~~~pv~iSf 216 (317)
.|.+++...+++|..+|. | --.+++|++.+++++++.+ +++.+.|
T Consensus 79 ~H~e~~~~AL~aGkhVl~-EKPla~t~~ea~~l~~~a~~~~--~~l~v~~ 125 (342)
T COG0673 79 LHAELALAALEAGKHVLC-EKPLALTLEEAEELVELARKAG--VKLMVGF 125 (342)
T ss_pred hhHHHHHHHHhcCCEEEE-cCCCCCCHHHHHHHHHHHHHcC--Cceeeeh
Confidence 455565555666664443 5 2235666666666665543 4555444
No 339
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=47.01 E-value=96 Score=26.97 Aligned_cols=59 Identities=25% Similarity=0.275 Sum_probs=33.9
Q ss_pred HhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcC
Q 021144 178 ANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (317)
Q Consensus 178 ~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC 250 (317)
.+.|+|++.+ +|.-......++.+++..+++|++.+ .|-+.+.+.+.+.. +++++++--
T Consensus 114 ~~~Gad~i~~--~p~~~~g~~~~~~l~~~~~~~p~~a~----------GGI~~~n~~~~~~~--G~~~v~v~s 172 (190)
T cd00452 114 LELGADIVKL--FPAEAVGPAYIKALKGPFPQVRFMPT----------GGVSLDNAAEWLAA--GVVAVGGGS 172 (190)
T ss_pred HHCCCCEEEE--cCCcccCHHHHHHHHhhCCCCeEEEe----------CCCCHHHHHHHHHC--CCEEEEEch
Confidence 3579999976 33222234445555543324665543 36677777777653 577766544
No 340
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=46.82 E-value=1.1e+02 Score=27.33 Aligned_cols=65 Identities=11% Similarity=0.002 Sum_probs=45.1
Q ss_pred EeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHH---HhhcCCCceEEEEcCC
Q 021144 186 AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECAS---IADSCEQVVAVGINCT 251 (317)
Q Consensus 186 ~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~---~~~~~~~~~aiGvNC~ 251 (317)
+..|+.+.+.++++-+++++.+...+||+.+.+.. +.-+.|.+..++.+ .+....++...|+-|-
T Consensus 95 ~~~~I~s~~~~~~l~~~a~~~g~~~~v~l~id~~~-Gm~R~Gi~~~~~~~~~~~i~~~~~l~l~Gl~tH 162 (224)
T cd06824 95 WVHSVDRLKIAKRLNDQRPAGLPPLNVCIQVNISG-EDSKSGVAPEDAAELAEAISQLPNLRLRGLMAI 162 (224)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCCcEEEEEEcCC-CCCCCCCCHHHHHHHHHHHhcCCCCcEEEEEEe
Confidence 55899999999998888776654467888887643 23356887655444 3444457788888885
No 341
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=46.70 E-value=2.6e+02 Score=26.42 Aligned_cols=96 Identities=9% Similarity=-0.007 Sum_probs=60.6
Q ss_pred HHHHHHhCCCCEEEeccC--------------CCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhh
Q 021144 173 RVLILANSGADLIAFETI--------------PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~--------------p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~ 238 (317)
-++.+.++||-.|.+|-. -+.+|+..=++++++...+.+++|--.. +.... ..++++++.+.
T Consensus 93 tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART--Da~~~--~g~deAI~Ra~ 168 (285)
T TIGR02317 93 TVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIART--DARAV--EGLDAAIERAK 168 (285)
T ss_pred HHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEc--Ccccc--cCHHHHHHHHH
Confidence 577888999999999963 2567777767777665434556655433 22222 34788887764
Q ss_pred c--CCCceEEEEcCC-ChhhhHHHHHHHHhhCCCcEEEEeC
Q 021144 239 S--CEQVVAVGINCT-SPRFIHGLILSVRKVTSKPVIIYPN 276 (317)
Q Consensus 239 ~--~~~~~aiGvNC~-~p~~~~~~l~~l~~~~~~pl~vyPN 276 (317)
. ..|+++|-+-+. +++.+..+.+. .+.|+++-+-
T Consensus 169 ay~~AGAD~vfi~g~~~~e~i~~~~~~----i~~Pl~~n~~ 205 (285)
T TIGR02317 169 AYVEAGADMIFPEALTSLEEFRQFAKA----VKVPLLANMT 205 (285)
T ss_pred HHHHcCCCEEEeCCCCCHHHHHHHHHh----cCCCEEEEec
Confidence 2 247888888775 45555554444 4578754443
No 342
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=46.47 E-value=2.8e+02 Score=26.85 Aligned_cols=63 Identities=14% Similarity=0.184 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhCCCCEEEec-cCC--CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhh
Q 021144 169 FHRRRVLILANSGADLIAFE-TIP--NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (317)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~E-T~p--~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~ 238 (317)
++.+.++.+.+.|+|.|.+- |+- ...++..+++.+++.. ++-++|-+.++ .|..+..++..+.
T Consensus 143 ~l~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~---~v~l~~H~HNd----~GlA~ANalaA~~ 208 (365)
T TIGR02660 143 FLVELAEVAAEAGADRFRFADTVGILDPFSTYELVRALRQAV---DLPLEMHAHND----LGMATANTLAAVR 208 (365)
T ss_pred HHHHHHHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhc---CCeEEEEecCC----CChHHHHHHHHHH
Confidence 44445556677899988554 443 5778888888887643 34467777665 3555555555543
No 343
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=46.21 E-value=77 Score=27.77 Aligned_cols=91 Identities=24% Similarity=0.299 Sum_probs=57.1
Q ss_pred CCCeEEEEeeCCCcCccCCCCCCCCCCCCC--------CC----------HH-HHHHHHHHHHHHHHhCCCCEEEeccCC
Q 021144 131 SRPVLVAASVGSYGAYLADGSEYSGDYGDA--------VS----------LE-TLKEFHRRRVLILANSGADLIAFETIP 191 (317)
Q Consensus 131 ~~~~~VagsiGP~g~~l~~gseY~g~y~~~--------~s----------~~-el~~~h~~qi~~l~~~gvD~l~~ET~p 191 (317)
+.+++++|-=|++.+..+--+|.+|.|..+ ++ .+ -....|..|++++.+.|-=+|.+=|-.
T Consensus 41 G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~yd~vFsRqveA~g~~GDvLigISTSG 120 (176)
T COG0279 41 GNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYGYDEVFSRQVEALGQPGDVLIGISTSG 120 (176)
T ss_pred CCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhccccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 457788877777654433233444444211 01 00 133467789999998886677888999
Q ss_pred CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcc
Q 021144 192 NKLEAKAYAELLEEEGITIPAWFSFNSKDGINV 224 (317)
Q Consensus 192 ~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l 224 (317)
+-.-+..+++.+++.+ . ..|.+|=+++|.+
T Consensus 121 NS~nVl~Ai~~Ak~~g--m-~vI~ltG~~GG~~ 150 (176)
T COG0279 121 NSKNVLKAIEAAKEKG--M-TVIALTGKDGGKL 150 (176)
T ss_pred CCHHHHHHHHHHHHcC--C-EEEEEecCCCccc
Confidence 8888888888888755 3 3446766665544
No 344
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=45.91 E-value=1.7e+02 Score=26.68 Aligned_cols=94 Identities=20% Similarity=0.368 Sum_probs=56.7
Q ss_pred HHHHHHhCCCCEEEe--ccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcC
Q 021144 173 RVLILANSGADLIAF--ETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (317)
Q Consensus 173 qi~~l~~~gvD~l~~--ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC 250 (317)
.++.|+++|+|.|.| |.-+++. .+++.+|+.+ +.+-+++ ..+|+++..-..+....-+....||=
T Consensus 76 ~i~~fa~agad~It~H~E~~~~~~---r~i~~Ik~~G--~kaGv~l--------nP~Tp~~~i~~~l~~vD~VllMsVnP 142 (220)
T COG0036 76 YIEAFAKAGADIITFHAEATEHIH---RTIQLIKELG--VKAGLVL--------NPATPLEALEPVLDDVDLVLLMSVNP 142 (220)
T ss_pred HHHHHHHhCCCEEEEEeccCcCHH---HHHHHHHHcC--CeEEEEE--------CCCCCHHHHHHHHhhCCEEEEEeECC
Confidence 466788899999965 7444554 4566777766 5555444 35777775555555433455556665
Q ss_pred C--ChhhhHHHHHHHHh---hCC-C-cEEEEeCCCC
Q 021144 251 T--SPRFIHGLILSVRK---VTS-K-PVIIYPNSGE 279 (317)
Q Consensus 251 ~--~p~~~~~~l~~l~~---~~~-~-pl~vyPNaG~ 279 (317)
. +-..+...++++++ ..+ + ++.+.-++|-
T Consensus 143 GfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI 178 (220)
T COG0036 143 GFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGI 178 (220)
T ss_pred CCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCc
Confidence 4 22455555554444 322 2 7788888884
No 345
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=45.89 E-value=1.9e+02 Score=26.93 Aligned_cols=78 Identities=13% Similarity=0.029 Sum_probs=51.3
Q ss_pred HHHHHHhCCCCEEEecc---CCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEc
Q 021144 173 RVLILANSGADLIAFET---IPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGIN 249 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET---~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvN 249 (317)
.++.+...|-|++++.+ --+..++..++.+++..+ .+.++-+ .++ +...+-+.++ .++.+|-+=
T Consensus 31 ~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g--~~~lVRv--------p~~-~~~~i~r~LD--~GA~GIivP 97 (267)
T PRK10128 31 MAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYA--SQPVIRP--------VEG-SKPLIKQVLD--IGAQTLLIP 97 (267)
T ss_pred HHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcC--CCeEEEC--------CCC-CHHHHHHHhC--CCCCeeEec
Confidence 46677789999999974 447888888888888655 5555444 222 2233334444 477888887
Q ss_pred CC-ChhhhHHHHHHH
Q 021144 250 CT-SPRFIHGLILSV 263 (317)
Q Consensus 250 C~-~p~~~~~~l~~l 263 (317)
.+ +++.+..+++..
T Consensus 98 ~V~saeeA~~~V~a~ 112 (267)
T PRK10128 98 MVDTAEQARQVVSAT 112 (267)
T ss_pred CcCCHHHHHHHHHhc
Confidence 76 577777776654
No 346
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=45.75 E-value=3.4e+02 Score=27.49 Aligned_cols=118 Identities=11% Similarity=0.019 Sum_probs=61.7
Q ss_pred CeEEEEeeCC-CcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEE-----Eec-cCCCHHH-HHHHHHHHH
Q 021144 133 PVLVAASVGS-YGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLI-----AFE-TIPNKLE-AKAYAELLE 204 (317)
Q Consensus 133 ~~~VagsiGP-~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l-----~~E-T~p~~~E-a~a~~~~~~ 204 (317)
++++..-|=| .| ++.+++.+ ++..+..+|+|+| +.. ++.-++| ++++.++++
T Consensus 145 RPL~~tiiKP~iG----------------lsp~~~A~----~~~~~~~GGvD~IKDDE~l~~~~~~p~~~Rv~~~~~a~~ 204 (450)
T cd08212 145 RPLLGCTIKPKLG----------------LSAKNYGR----VVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVAEAVN 204 (450)
T ss_pred CceEEEeccCccC----------------CCHHHHHH----HHHHHHccCCcccccCccCCCCCCCCHHHHHHHHHHHHH
Confidence 5566666677 44 36666544 4555777999987 333 2333433 444555544
Q ss_pred H----hCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCC-ChhhhHHHHHHHHhhCCCcEEEEeCCC
Q 021144 205 E----EGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT-SPRFIHGLILSVRKVTSKPVIIYPNSG 278 (317)
Q Consensus 205 ~----~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~-~p~~~~~~l~~l~~~~~~pl~vyPNaG 278 (317)
+ ++ .+.+.++.+..+ +-..+.+-++.+.+ .+..++.+|.. +... ...|....+..+.||...|+.-
T Consensus 205 ~a~~eTG--~~~~y~~NiTa~----~~~em~~ra~~a~~-~G~~~~mv~~~~G~~~-l~~l~~~a~~~~l~IhaHrA~~ 275 (450)
T cd08212 205 KAQAETG--EVKGHYLNVTAG----TMEEMYKRAEFAKE-LGSPIIMHDLLTGFTA-IQSLAKWCRDNGMLLHLHRAGH 275 (450)
T ss_pred HHHHhhC--CcceeeccccCC----CHHHHHHHHHHHHH-hCCCeEeeecccccch-HHHHHHHhhhcCceEEeccccc
Confidence 3 44 455556644211 01122233333433 46678888853 2222 2223332224688999888864
No 347
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=45.53 E-value=2.6e+02 Score=26.19 Aligned_cols=104 Identities=15% Similarity=0.175 Sum_probs=57.1
Q ss_pred HHHHHHHHHhCCCCEEEec----------------------cCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCC
Q 021144 170 HRRRVLILANSGADLIAFE----------------------TIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSG 227 (317)
Q Consensus 170 h~~qi~~l~~~gvD~l~~E----------------------T~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G 227 (317)
..+.++.|.++|+|+|=+- -=.+++....+++.+++.+.+.|+++-...+. -...|
T Consensus 33 s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Np--i~~~G 110 (265)
T COG0159 33 SLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNP--IFNYG 110 (265)
T ss_pred HHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccH--HHHhh
Confidence 3456778999999998321 11122333334445555556789887665533 22234
Q ss_pred CcHHHHHHHhhcCCCceEEEEcCCChhhhHHHHHHHHhhCCCc-EEEEeCCC
Q 021144 228 DSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKP-VIIYPNSG 278 (317)
Q Consensus 228 ~~l~~a~~~~~~~~~~~aiGvNC~~p~~~~~~l~~l~~~~~~p-l~vyPNaG 278 (317)
++..++.+.+ .+++++-+==-.++....+.+..+++-=.| ++|-||+.
T Consensus 111 --ie~F~~~~~~-~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~ 159 (265)
T COG0159 111 --IEKFLRRAKE-AGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTP 159 (265)
T ss_pred --HHHHHHHHHH-cCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 3444555554 477777766655666665555555432112 45666654
No 348
>TIGR03586 PseI pseudaminic acid synthase.
Probab=45.53 E-value=2.3e+02 Score=27.35 Aligned_cols=129 Identities=15% Similarity=0.115 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHH--------------------HHHHHhCCCccEEEEEEEcCCCcccCC
Q 021144 168 EFHRRRVLILANSGADLIAFETIPNKLEAKAYA--------------------ELLEEEGITIPAWFSFNSKDGINVVSG 227 (317)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~--------------------~~~~~~~~~~pv~iSf~~~~~~~l~~G 227 (317)
++|++..+.-.+.|.+++. |..+...+.-+. +.+.++ ++||++|- |. .+=
T Consensus 77 e~~~~L~~~~~~~Gi~~~s--tpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~--gkPvilst-----G~-~t~ 146 (327)
T TIGR03586 77 EWHKELFERAKELGLTIFS--SPFDETAVDFLESLDVPAYKIASFEITDLPLIRYVAKT--GKPIIMST-----GI-ATL 146 (327)
T ss_pred HHHHHHHHHHHHhCCcEEE--ccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHhc--CCcEEEEC-----CC-CCH
Confidence 4566555555566766663 444544444332 223333 48999876 21 111
Q ss_pred CcHHHHHHHhhcCCCceEEEEcCCC--h----hhhHHHHHHHHhhCCCcEEEEeCC-CCc----------------cccc
Q 021144 228 DSILECASIADSCEQVVAVGINCTS--P----RFIHGLILSVRKVTSKPVIIYPNS-GET----------------YNAE 284 (317)
Q Consensus 228 ~~l~~a~~~~~~~~~~~aiGvNC~~--p----~~~~~~l~~l~~~~~~pl~vyPNa-G~~----------------~d~~ 284 (317)
..+..|+..+........+.+-|++ | ..=...+..|++..+.|++..=.. |.. ++.
T Consensus 147 ~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~~pVG~SDHt~G~~~~~aAva~GA~iIEkH~tl- 225 (327)
T TIGR03586 147 EEIQEAVEACREAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAERFNVPVGLSDHTLGILAPVAAVALGACVIEKHFTL- 225 (327)
T ss_pred HHHHHHHHHHHHCCCCcEEEEecCCCCCCCcccCCHHHHHHHHHHhCCCEEeeCCCCchHHHHHHHHcCCCEEEeCCCh-
Confidence 2344566666543334677888973 2 223567778888777787553221 100 111
Q ss_pred ccccc---ccCCCChhhHHHHHHHHH
Q 021144 285 LKKWV---VSFSLHFFPLELILNPFA 307 (317)
Q Consensus 285 ~~~w~---~~~~~~~~~~~~~~~~w~ 307 (317)
.+.|. ....++|++|.+.+....
T Consensus 226 d~~l~G~D~~~Sl~p~e~~~lv~~ir 251 (327)
T TIGR03586 226 DRSDGGVDSAFSLEPDEFKALVKEVR 251 (327)
T ss_pred hhcCCCCChhccCCHHHHHHHHHHHH
Confidence 13342 234678999998876554
No 349
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=45.43 E-value=1e+02 Score=29.68 Aligned_cols=84 Identities=18% Similarity=0.204 Sum_probs=44.8
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcC-CCceEEEEcCCCh-----------hh
Q 021144 188 ETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSC-EQVVAVGINCTSP-----------RF 255 (317)
Q Consensus 188 ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~-~~~~aiGvNC~~p-----------~~ 255 (317)
+.+++. .+...++-+++...+.|+++|+.-.. ....+.+.+|.++.+... ..++++=+|=++| +.
T Consensus 114 ~Gl~n~-G~~~~l~~i~~~~~~~~i~vsi~~~~--~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~ 190 (335)
T TIGR01036 114 MGFNNH-GADVLVERLKRARYKGPIGINIGKNK--DTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAE 190 (335)
T ss_pred CCCCCh-hHHHHHHHHhhccCCCcEEEEEeCCC--CCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHH
Confidence 444442 23333443443333589999984331 122344556655554431 1367877765433 35
Q ss_pred hHHHHHHHHhhCC-------CcEEEE
Q 021144 256 IHGLILSVRKVTS-------KPVIIY 274 (317)
Q Consensus 256 ~~~~l~~l~~~~~-------~pl~vy 274 (317)
+..+++.+++..+ +|+++.
T Consensus 191 ~~~i~~~V~~~~~~~~~~~~~Pv~vK 216 (335)
T TIGR01036 191 LRDLLTAVKQEQDGLRRVHRVPVLVK 216 (335)
T ss_pred HHHHHHHHHHHHHhhhhccCCceEEE
Confidence 6667777766554 887755
No 350
>PF08267 Meth_synt_1: Cobalamin-independent synthase, N-terminal domain; InterPro: IPR013215 Cobalamin-independent methionine synthase, MetE, catalyses the synthesis of the amino acid methionine by the transfer of a methyl group from methyltetrahydrofolate to homocysteine []. The N-terminal and C-terminal domains of MetE together define a catalytic cleft in the enzyme. The N-terminal domain is thought to bind the substrate, in particular, the negatively charged polyglutamate chain. The N-terminal domain is also thought to stabilise a loop from the C-terminal domain.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0008270 zinc ion binding, 0008652 cellular amino acid biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3T0C_A 3L7R_A 2NQ5_A 3PPF_A 3PPH_A 3PPG_A ....
Probab=45.37 E-value=2.1e+02 Score=27.37 Aligned_cols=87 Identities=15% Similarity=0.147 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEec----cCC-CHHHHHHHHHHHHHh--CCCccEEEEEEEcCCCcccCCCcHHHHHH
Q 021144 163 LETLKEFHRRRVLILANSGADLIAFE----TIP-NKLEAKAYAELLEEE--GITIPAWFSFNSKDGINVVSGDSILECAS 235 (317)
Q Consensus 163 ~~el~~~h~~qi~~l~~~gvD~l~~E----T~p-~~~Ea~a~~~~~~~~--~~~~pv~iSf~~~~~~~l~~G~~l~~a~~ 235 (317)
.+++...|.+.++.|.+.||..|=++ +.. +-.+..++..+.++. ..+.+++++-.|.+ +.+...
T Consensus 176 l~~l~~vY~~ll~~L~~~G~~~VQldEP~Lv~d~~~~~~~~~~~aY~~L~~~~~~~ill~TYFg~---------~~~~l~ 246 (310)
T PF08267_consen 176 LDDLLPVYAELLKELAAAGVEWVQLDEPALVLDLPEEWLEAFEEAYEELAAAPRPKILLATYFGD---------LGDNLE 246 (310)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SEEEEE-GGGGSSGCHHHHHHHHHHHHHHCCTTTSEEEEE--SS-----------CCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecCCeeecCCCHHHHHHHHHHHHHHhcCCCCcEEEECCCCc---------hhhHHH
Confidence 46688899999999999999988443 111 344555555555554 34678998887754 223445
Q ss_pred HhhcCCCceEEEEcCCC-hhhhHHH
Q 021144 236 IADSCEQVVAVGINCTS-PRFIHGL 259 (317)
Q Consensus 236 ~~~~~~~~~aiGvNC~~-p~~~~~~ 259 (317)
.+.+ .+++++|+-++. ++.+..+
T Consensus 247 ~l~~-lpv~~l~lDlv~~~~~l~~~ 270 (310)
T PF08267_consen 247 LLLD-LPVDGLHLDLVRGPENLEAL 270 (310)
T ss_dssp HHTT-SSESEEEEETTTHCHHHHHH
T ss_pred HHhc-CCCcEEEeeccCCcccHHHH
Confidence 5554 589999999994 5554444
No 351
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=45.31 E-value=2e+02 Score=24.77 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCCCEEEe-----ccCCCHHHHHHHHHHHHHhCCCccEEEEEEEc
Q 021144 170 HRRRVLILANSGADLIAF-----ETIPNKLEAKAYAELLEEEGITIPAWFSFNSK 219 (317)
Q Consensus 170 h~~qi~~l~~~gvD~l~~-----ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~ 219 (317)
+.+.++.+.++|+|.|-+ .+.++...-..+++.+++.. +.|+-+-+.+.
T Consensus 14 ~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~-~~~~~v~l~~~ 67 (211)
T cd00429 14 LGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHT-DLPLDVHLMVE 67 (211)
T ss_pred HHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhC-CCcEEEEeeeC
Confidence 455788899999999977 33444321112333444432 35665555554
No 352
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=45.09 E-value=3.2e+02 Score=27.07 Aligned_cols=114 Identities=21% Similarity=0.246 Sum_probs=63.6
Q ss_pred CCeEEEEeeCC-CcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEE-----Eec-cCCCHHH-HHHHHHHH
Q 021144 132 RPVLVAASVGS-YGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLI-----AFE-TIPNKLE-AKAYAELL 203 (317)
Q Consensus 132 ~~~~VagsiGP-~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l-----~~E-T~p~~~E-a~a~~~~~ 203 (317)
.++++..-|=| .| ++.+++.+ ++..+..+|+|+| +.. .+.-++| ++++.+++
T Consensus 123 ~RPL~~tiiKP~~G----------------lsp~~~a~----~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~a~~~a~ 182 (391)
T cd08209 123 DRPLLMSIFKGVLG----------------LDLDDLAE----QLREQALGGVDLIKDDEILFDNPLAPALERIRACRPVL 182 (391)
T ss_pred CCceEEeeeccccC----------------CCHHHHHH----HHHHHHhCCCCcccccccCCCCCCCCHHHHHHHHHHHH
Confidence 35677777777 45 35555444 5566777999988 322 3333333 44555555
Q ss_pred HH----hCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCC--ChhhhHHHHHHHHh--hCCCcEEEEe
Q 021144 204 EE----EGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT--SPRFIHGLILSVRK--VTSKPVIIYP 275 (317)
Q Consensus 204 ~~----~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~--~p~~~~~~l~~l~~--~~~~pl~vyP 275 (317)
++ ++ .+.+-.+.+..+ -..+.+=++.+.+ .+..++.+|.. +.. .++.+++ ..+.||...|
T Consensus 183 ~~a~~eTG--~~~~ya~NiT~~-----~~em~~ra~~~~~-~G~~~~mv~~~~~G~~----~l~~l~~~~~~~lpIhaHr 250 (391)
T cd08209 183 QEVYEQTG--RRTLYAVNLTGP-----VFTLKEKARRLVE-AGANALLFNVFAYGLD----VLEALASDPEINVPIFAHP 250 (391)
T ss_pred HHHHHhhC--CcceEEEEcCCC-----HHHHHHHHHHHHH-hCCCEEEEeccccchH----HHHHHHhcCcCCcEEEecC
Confidence 43 44 555556655321 1222333333433 46778888874 333 3455554 4467888888
Q ss_pred CC
Q 021144 276 NS 277 (317)
Q Consensus 276 Na 277 (317)
+.
T Consensus 251 a~ 252 (391)
T cd08209 251 AF 252 (391)
T ss_pred Cc
Confidence 86
No 353
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=45.04 E-value=3.3e+02 Score=27.21 Aligned_cols=112 Identities=18% Similarity=0.094 Sum_probs=63.1
Q ss_pred CCeEEEEeeCC-CcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEE-----Eec-cCCCHHH-HHHHHHHH
Q 021144 132 RPVLVAASVGS-YGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLI-----AFE-TIPNKLE-AKAYAELL 203 (317)
Q Consensus 132 ~~~~VagsiGP-~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l-----~~E-T~p~~~E-a~a~~~~~ 203 (317)
.++++..-|=| .| ++.+++.+ ++..+..+|+|+| +.. ++.-++| ++++.+++
T Consensus 131 ~RPL~~tiiKP~~G----------------lsp~~~a~----~~y~~~~GGiD~IKDDE~l~~q~~~p~~eRv~~~~~a~ 190 (414)
T cd08206 131 GRPLLGTIVKPKLG----------------LSPKEYAR----VVYEALRGGLDFVKDDENQNSQPFMRFEDRILFVAEAM 190 (414)
T ss_pred CCceEEEecccccC----------------CCHHHHHH----HHHHHHhcCCcccccCccCCCCCCCcHHHHHHHHHHHH
Confidence 35677777777 45 46666444 5566777999987 222 3333444 44455554
Q ss_pred H----HhCCCccEEEEEEEcCCCcccCCCcHHHHHHH---hhcCCCceEEEEcCC--ChhhhHHHHHHHHh---hCCCcE
Q 021144 204 E----EEGITIPAWFSFNSKDGINVVSGDSILECASI---ADSCEQVVAVGINCT--SPRFIHGLILSVRK---VTSKPV 271 (317)
Q Consensus 204 ~----~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~---~~~~~~~~aiGvNC~--~p~~~~~~l~~l~~---~~~~pl 271 (317)
+ +++ .+.+-++.+ +|.+..+..+. +.+ .+..++.||.. +... ++.+++ ..+.||
T Consensus 191 ~~a~~eTG--~~~~y~~Ni-------T~~~~~em~~ra~~~~~-~G~~~~mv~~~~~G~~~----l~~l~~~~~~~~l~i 256 (414)
T cd08206 191 DKAEAETG--EAKGHYLNI-------TADTPEEMIKRAEFAKE-LGSVIVMVDGVTAGWTA----IQSARRWCPDNGLAL 256 (414)
T ss_pred HHHHHhhC--CcceEEecc-------CCCcHHHHHHHHHHHHH-hCCcEEEEeeecccHHH----HHHHHHhccccCeEE
Confidence 4 344 455556644 23334444333 333 46778888874 4433 444444 246788
Q ss_pred EEEeCC
Q 021144 272 IIYPNS 277 (317)
Q Consensus 272 ~vyPNa 277 (317)
...|+.
T Consensus 257 h~HrA~ 262 (414)
T cd08206 257 HAHRAG 262 (414)
T ss_pred EEcccc
Confidence 888875
No 354
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=45.00 E-value=15 Score=35.08 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.3
Q ss_pred CCChHHHHHHHHHHHHhhccccccc
Q 021144 51 VSSPHLVRKVHLDYLDAGANIIITA 75 (317)
Q Consensus 51 l~~Pe~V~~iH~~Yl~AGAdiI~Tn 75 (317)
++....|.+.+..+-+||||+|.|.
T Consensus 281 id~~~~~~Esl~~~kRAGAd~IiTY 305 (314)
T cd00384 281 IDEERVVLESLTSIKRAGADLIITY 305 (314)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEee
Confidence 5777899999999999999999874
No 355
>KOG2949 consensus Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism]
Probab=44.99 E-value=2.3e+02 Score=26.22 Aligned_cols=91 Identities=18% Similarity=0.239 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcC------CCcccCCCcHHHHHHHhhc---
Q 021144 169 FHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKD------GINVVSGDSILECASIADS--- 239 (317)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~------~~~l~~G~~l~~a~~~~~~--- 239 (317)
.-+..++.+.++|+|.+-+|-=.+- ...+++.+-+. ++||+-.+-+.+ +|.-..|.++.++++.++.
T Consensus 118 a~knAv~vmk~~g~~~vK~EgGs~~--~~~~~~~l~er--gipV~gHvGLTPQ~v~~lGGyk~QGr~~~~a~~l~EtAmq 193 (306)
T KOG2949|consen 118 AVKNAVRVMKEGGMDAVKLEGGSNS--RITAAKRLVER--GIPVMGHVGLTPQAVSVLGGYKPQGRNIASAVKLVETAMQ 193 (306)
T ss_pred HHHHHHHHHHhcCCceEEEccCcHH--HHHHHHHHHHc--CCceeeeccCChhhhhhccCcCccchhHHHHHHHHHHHHH
Confidence 3445677888899999999976632 22333334443 489987775543 2333467777777766542
Q ss_pred --CCCceEEEEcCCChhhhHHHHHHH
Q 021144 240 --CEQVVAVGINCTSPRFIHGLILSV 263 (317)
Q Consensus 240 --~~~~~aiGvNC~~p~~~~~~l~~l 263 (317)
..+...+-+.|..|.....+-..+
T Consensus 194 Lqk~Gc~svvlECvP~~~A~~iTs~l 219 (306)
T KOG2949|consen 194 LQKAGCFSVVLECVPPPVAAAITSAL 219 (306)
T ss_pred HHhcccceEeeecCChHHHHHHHhcc
Confidence 346788899999765444443333
No 356
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=44.99 E-value=3.6e+02 Score=27.65 Aligned_cols=66 Identities=14% Similarity=0.069 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhCCCCEEEec-cCC--CHHHHHHHHHHHHHhCCCc-cEEEEEEEcCCCcccCCCcHHHHHHHhh
Q 021144 169 FHRRRVLILANSGADLIAFE-TIP--NKLEAKAYAELLEEEGITI-PAWFSFNSKDGINVVSGDSILECASIAD 238 (317)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~E-T~p--~~~Ea~a~~~~~~~~~~~~-pv~iSf~~~~~~~l~~G~~l~~a~~~~~ 238 (317)
|..+.++.+.+.|+|.|.+- |+- ...++..+++.+++.-++. .+.++|-+.++ .|..++.++..+.
T Consensus 240 fl~~~~~~a~~~Gad~I~l~DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND----~GlAvANslaAi~ 309 (503)
T PLN03228 240 FLCKILGEAIKAGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHND----LGLATANTIAGIC 309 (503)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccccCceeEecccCC----cChHHHHHHHHHH
Confidence 44556677788999988654 543 5677888888887642222 27778877665 3555555554443
No 357
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=44.97 E-value=2.1e+02 Score=25.81 Aligned_cols=71 Identities=11% Similarity=-0.005 Sum_probs=41.7
Q ss_pred HHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcc------cCCCcHHHHHHHhhcCCCceEEE
Q 021144 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINV------VSGDSILECASIADSCEQVVAVG 247 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l------~~G~~l~~a~~~~~~~~~~~aiG 247 (317)
++.+.+.|+|-+++-|..- +...+-++.++++ . +++|+-++++.-. ..+.++.++++.+.+. +..+-
T Consensus 88 v~~l~~~G~~~vivGtaa~--~~~~l~~~~~~~g--~-ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~--~~~ii 160 (228)
T PRK04128 88 IKDAYEIGVENVIIGTKAF--DLEFLEKVTSEFE--G-ITVSLDVKGGRIAVKGWLEESSIKVEDAYEMLKNY--VNRFI 160 (228)
T ss_pred HHHHHHCCCCEEEECchhc--CHHHHHHHHHHcC--C-EEEEEEccCCeEecCCCeEcCCCCHHHHHHHHHHH--hCEEE
Confidence 3334557999988865443 2334444555554 3 8889988654211 2456677888777643 34455
Q ss_pred EcCC
Q 021144 248 INCT 251 (317)
Q Consensus 248 vNC~ 251 (317)
++..
T Consensus 161 ~t~i 164 (228)
T PRK04128 161 YTSI 164 (228)
T ss_pred EEec
Confidence 5554
No 358
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=44.83 E-value=15 Score=35.19 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=22.4
Q ss_pred CCChHHHHHHHHHHHHhhccccccc
Q 021144 51 VSSPHLVRKVHLDYLDAGANIIITA 75 (317)
Q Consensus 51 l~~Pe~V~~iH~~Yl~AGAdiI~Tn 75 (317)
++..+.|.+.+..+-+||||+|.|.
T Consensus 286 ~d~~~~~~Esl~~ikRAGAd~IiTY 310 (320)
T cd04823 286 LDEDKVMLESLLAFKRAGADGILTY 310 (320)
T ss_pred CcHHHHHHHHHHHHHhcCCCEEeec
Confidence 5777899999999999999999974
No 359
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=44.51 E-value=16 Score=35.04 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.6
Q ss_pred CCChHHHHHHHHHHHHhhccccccc
Q 021144 51 VSSPHLVRKVHLDYLDAGANIIITA 75 (317)
Q Consensus 51 l~~Pe~V~~iH~~Yl~AGAdiI~Tn 75 (317)
++..+.|.+.+..+-+||||+|.|.
T Consensus 290 ~d~~~~~~Esl~~~kRAGAd~IiTY 314 (322)
T PRK13384 290 LDERAVVTETLGGLKRAGADLIVSY 314 (322)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEeeh
Confidence 6777899999999999999999874
No 360
>KOG2794 consensus Delta-aminolevulinic acid dehydratase [Coenzyme transport and metabolism]
Probab=44.51 E-value=15 Score=34.53 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=21.3
Q ss_pred CCChHHHHHHHHHHHHhhccccccc
Q 021144 51 VSSPHLVRKVHLDYLDAGANIIITA 75 (317)
Q Consensus 51 l~~Pe~V~~iH~~Yl~AGAdiI~Tn 75 (317)
++-...|-+.|.-|.+||||||.|.
T Consensus 303 ~Dlk~~vmEsm~~frRAGAdiIlTY 327 (340)
T KOG2794|consen 303 FDLKKVVMESMLGFRRAGADIILTY 327 (340)
T ss_pred ccHHHHHHHHHHHHHhcCCcEEEee
Confidence 4556788999999999999999874
No 361
>PRK10481 hypothetical protein; Provisional
Probab=44.50 E-value=1.3e+02 Score=27.40 Aligned_cols=106 Identities=15% Similarity=0.119 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEeccCCC---HHHHHHHH--------HHHHHhCC---------------------
Q 021144 161 VSLETLKEFHRRRVLILANSGADLIAFETIPN---KLEAKAYA--------ELLEEEGI--------------------- 208 (317)
Q Consensus 161 ~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~---~~Ea~a~~--------~~~~~~~~--------------------- 208 (317)
++.+.+...-+.++..|.+.|+|.|++=...+ +...+.++ ..+.....
T Consensus 70 ~s~~~v~~~lq~~i~~l~~~g~d~ivl~Ctgdfp~l~a~r~~l~~P~~~i~~lv~Al~~g~riGVitP~~~qi~~~~~kw 149 (224)
T PRK10481 70 VSKQKVERDLQSVIEVLDNQGYDVILLLCTGEFPSLTARNAILLEPSRILPPLVAAIVGGHQVGVIVPVEEQLAQQAQKW 149 (224)
T ss_pred EEHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCCCccccCccccCchhhHHHHHHHhcCCCeEEEEEeCHHHHHHHHHHH
Confidence 68888888888899999999999998765544 33323221 11111100
Q ss_pred ---CccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCChhhhHHHHHHHHhhCCCcEE
Q 021144 209 ---TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVI 272 (317)
Q Consensus 209 ---~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~p~~~~~~l~~l~~~~~~pl~ 272 (317)
..++. +.+.... ..+-..+.++++.+.. .++++|=+-|++... ...+.+.+.+++|++
T Consensus 150 ~~~G~~v~--~~~aspy-~~~~~~l~~aa~~L~~-~gaD~Ivl~C~G~~~--~~~~~le~~lg~PVI 210 (224)
T PRK10481 150 QVLQKPPV--FALASPY-HGSEEELIDAGKELLD-QGADVIVLDCLGYHQ--RHRDLLQKALDVPVL 210 (224)
T ss_pred HhcCCcee--EeecCCC-CCCHHHHHHHHHHhhc-CCCCEEEEeCCCcCH--HHHHHHHHHHCcCEE
Confidence 01111 2222211 1111134555665654 689999999998542 335556666788864
No 362
>PRK06739 pyruvate kinase; Validated
Probab=44.45 E-value=3.1e+02 Score=26.75 Aligned_cols=51 Identities=12% Similarity=0.171 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhC-CCccEEEEE
Q 021144 161 VSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEG-ITIPAWFSF 216 (317)
Q Consensus 161 ~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~-~~~pv~iSf 216 (317)
++..+..+ ++..++.++|+|.+==+.+.++++.+.+.+++.+ .+.+++.-.
T Consensus 163 ltekD~~d-----i~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~g~~~~~IiaKI 214 (352)
T PRK06739 163 ITEKDKKD-----IQFLLEEDVDFIACSFVRKPSHIKEIRDFIQQYKETSPNLIAKI 214 (352)
T ss_pred CCHHHHHH-----HHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEE
Confidence 56656555 4456678999999988889999999888888764 246676554
No 363
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=44.40 E-value=2.5e+02 Score=25.54 Aligned_cols=93 Identities=12% Similarity=0.100 Sum_probs=53.3
Q ss_pred HHHHHHhCCCCEEEeccC--CCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcc------cCCCcHHHHHHHhhcCCCce
Q 021144 173 RVLILANSGADLIAFETI--PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINV------VSGDSILECASIADSCEQVV 244 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~--p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l------~~G~~l~~a~~~~~~~~~~~ 244 (317)
+++.+.+.|+|-+.+-|. .+.+-+ -+++++.+ +-.+++|+-++.++++ .++.++.+.++.+.+ .++.
T Consensus 87 ~~~~~l~~Ga~kvvigt~a~~~p~~~---~~~~~~~g-~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~-~g~~ 161 (232)
T PRK13586 87 KAKRLLSLDVNALVFSTIVFTNFNLF---HDIVREIG-SNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNE-LELL 161 (232)
T ss_pred HHHHHHHCCCCEEEECchhhCCHHHH---HHHHHHhC-CCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHh-cCCC
Confidence 345566689999988664 455433 44455654 3568899988322322 244577788888865 3444
Q ss_pred EEEEcCC-------ChhhhHHHHHHHHhhCCCcEEEE
Q 021144 245 AVGINCT-------SPRFIHGLILSVRKVTSKPVIIY 274 (317)
Q Consensus 245 aiGvNC~-------~p~~~~~~l~~l~~~~~~pl~vy 274 (317)
.|-++-. +|+ ..+++.+.+. ..| +++
T Consensus 162 ~ii~tdI~~dGt~~G~d--~el~~~~~~~-~~~-via 194 (232)
T PRK13586 162 GIIFTYISNEGTTKGID--YNVKDYARLI-RGL-KEY 194 (232)
T ss_pred EEEEecccccccCcCcC--HHHHHHHHhC-CCC-EEE
Confidence 4444442 232 2356666654 455 344
No 364
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=44.33 E-value=96 Score=28.58 Aligned_cols=63 Identities=19% Similarity=0.214 Sum_probs=43.7
Q ss_pred EEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCC-C--hhhhHHHHHHHHhhCCCcEEEEeCCCC
Q 021144 213 WFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT-S--PRFIHGLILSVRKVTSKPVIIYPNSGE 279 (317)
Q Consensus 213 ~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~-~--p~~~~~~l~~l~~~~~~pl~vyPNaG~ 279 (317)
|..|+.-|..+. +-..+.++.+.. .+-++|.|--+ + -+.+..+++.+++.++.|+++.|.+..
T Consensus 16 ~~H~tliDP~k~---~~~~ei~~~~~~-~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~ 81 (240)
T COG1646 16 KRHLTLIDPDKT---EEADEIAEAAAE-AGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGSPS 81 (240)
T ss_pred ceEEEEeCcccc---cccHHHHHHHHH-cCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCChh
Confidence 667775443331 223344444444 47899999887 3 367999999999888999999999863
No 365
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=44.26 E-value=2.5e+02 Score=25.62 Aligned_cols=96 Identities=11% Similarity=0.075 Sum_probs=55.0
Q ss_pred HHHHHHhCCCCEEEe--ccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcC
Q 021144 173 RVLILANSGADLIAF--ETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (317)
Q Consensus 173 qi~~l~~~gvD~l~~--ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC 250 (317)
.++.|.++|+|.|.| |..++ ...+++.+|+.+ .++=+.++++ .+|+++.....+.....+....+|=
T Consensus 83 ~i~~~~~aGad~It~H~Ea~~~---~~~~l~~Ik~~g--~~~kaGlaln------P~Tp~~~i~~~l~~vD~VLiMtV~P 151 (228)
T PRK08091 83 VAKACVAAGADIVTLQVEQTHD---LALTIEWLAKQK--TTVLIGLCLC------PETPISLLEPYLDQIDLIQILTLDP 151 (228)
T ss_pred HHHHHHHhCCCEEEEcccCccc---HHHHHHHHHHCC--CCceEEEEEC------CCCCHHHHHHHHhhcCEEEEEEECC
Confidence 356788899999975 75444 445667788876 5333444443 4678877776665433344444443
Q ss_pred C--ChhhhHHHHHHHHhh------CCCcEEEEeCCCC
Q 021144 251 T--SPRFIHGLILSVRKV------TSKPVIIYPNSGE 279 (317)
Q Consensus 251 ~--~p~~~~~~l~~l~~~------~~~pl~vyPNaG~ 279 (317)
. +-..+...++++++. .+.-+.++-++|-
T Consensus 152 GfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI 188 (228)
T PRK08091 152 RTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSM 188 (228)
T ss_pred CCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCC
Confidence 2 223444444444332 1223667778874
No 366
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=44.18 E-value=2.4e+02 Score=25.29 Aligned_cols=82 Identities=16% Similarity=0.227 Sum_probs=48.1
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEE---c
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI---N 249 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGv---N 249 (317)
|++...++|+|+++= |.+.+ .+++++++.+ +|++ +.-.++.|+.+..+. +.+.|=+ +
T Consensus 72 ~a~~a~~aGA~Fivs---P~~~~--~v~~~~~~~~--i~~i-----------PG~~TptEi~~A~~~--Ga~~vKlFPA~ 131 (204)
T TIGR01182 72 QLRQAVDAGAQFIVS---PGLTP--ELAKHAQDHG--IPII-----------PGVATPSEIMLALEL--GITALKLFPAE 131 (204)
T ss_pred HHHHHHHcCCCEEEC---CCCCH--HHHHHHHHcC--CcEE-----------CCCCCHHHHHHHHHC--CCCEEEECCch
Confidence 566677899999963 44433 5666777755 7777 123578888887763 4444433 3
Q ss_pred CCC-hhhhHHHHHHHHhhC-CCcEEEEeCCCCc
Q 021144 250 CTS-PRFIHGLILSVRKVT-SKPVIIYPNSGET 280 (317)
Q Consensus 250 C~~-p~~~~~~l~~l~~~~-~~pl~vyPNaG~~ 280 (317)
..+ |.+ ++.++... + +-++|-+|-.
T Consensus 132 ~~GG~~y----ikal~~plp~--i~~~ptGGV~ 158 (204)
T TIGR01182 132 VSGGVKM----LKALAGPFPQ--VRFCPTGGIN 158 (204)
T ss_pred hcCCHHH----HHHHhccCCC--CcEEecCCCC
Confidence 332 554 44444322 2 3345877753
No 367
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=44.09 E-value=2.2e+02 Score=28.55 Aligned_cols=105 Identities=17% Similarity=0.199 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEeccCC-------CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHH
Q 021144 162 SLETLKEFHRRRVLILANSGADLIAFETIP-------NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECA 234 (317)
Q Consensus 162 s~~el~~~h~~qi~~l~~~gvD~l~~ET~p-------~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~ 234 (317)
+.+.+++.|.. +. .+.|++++|-.- .+.+-.-..+.++..+ .||++-...+. .+.++...+
T Consensus 63 ~~~~i~~~~~~----~~-~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~--~pVILV~~~~~-----~~~t~~al~ 130 (449)
T TIGR00379 63 SEAQIQECFHR----HS-KGTDYSIIEGVRGLYDGISAITDYGSTASVAKALD--APIVLVMNCQR-----LSRSAAAIV 130 (449)
T ss_pred CHHHHHHHHHH----hc-ccCCEEEEecCCccccCCCCCCCCccHHHHHHHhC--CCEEEEECCch-----HHHHHHHHH
Confidence 55666665543 22 468999999651 1112223446677765 89998775431 122333322
Q ss_pred H---HhhcCCCceEEEEcCCCh-hhhHHHHHHHHhhCCCc-EEEEeCCC
Q 021144 235 S---IADSCEQVVAVGINCTSP-RFIHGLILSVRKVTSKP-VIIYPNSG 278 (317)
Q Consensus 235 ~---~~~~~~~~~aiGvNC~~p-~~~~~~l~~l~~~~~~p-l~vyPNaG 278 (317)
. .......+.+|=+|+..+ .+.....+.+.+.++.| |.+-|.--
T Consensus 131 ~~~~~~~~~i~i~GvIlN~v~~~~~~~~~~~~i~~~~gipvLG~IP~~~ 179 (449)
T TIGR00379 131 LGYRSFDPGVKLKGVILNRVGSERHLEKLKIAVEPLRGIPILGVIPRQQ 179 (449)
T ss_pred HHHHhhCCCCCEEEEEEECCCCHHHHHHHHHHHHHhCCCCEEEEecCcc
Confidence 1 122234577888999864 44444455666666777 55666553
No 368
>PTZ00066 pyruvate kinase; Provisional
Probab=44.08 E-value=3.6e+02 Score=27.82 Aligned_cols=75 Identities=17% Similarity=0.204 Sum_probs=46.7
Q ss_pred EEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEE
Q 021144 135 LVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWF 214 (317)
Q Consensus 135 ~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~i 214 (317)
...|.|++.-..--||....- +.++..+..+. ++..++.+||+|++==+.+.++++.+.+.+++.+.+.+++.
T Consensus 184 ~~gG~l~~~Kgvnlpg~~~~l---p~ltekD~~dI----~~f~~~~~vD~IalSFVr~a~DI~~~r~~l~~~g~~~~IiA 256 (513)
T PTZ00066 184 LNNATIGERKNMNLPGVKVEL---PVIGEKDKNDI----LNFAIPMGCDFIALSFVQSADDVRLCRQLLGERGRHIKIIP 256 (513)
T ss_pred EeCcEEcCCcccccCCCccCC---CCCCHHHHHHH----HHHHHhcCCCEEEECCCCCHHHHHHHHHHHHhCCCCceEEE
Confidence 344666664222123333221 22566664441 14456789999999888899999999998887764566665
Q ss_pred EE
Q 021144 215 SF 216 (317)
Q Consensus 215 Sf 216 (317)
-.
T Consensus 257 KI 258 (513)
T PTZ00066 257 KI 258 (513)
T ss_pred EE
Confidence 54
No 369
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=43.97 E-value=16 Score=35.03 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=22.5
Q ss_pred CCChHHHHHHHHHHHHhhccccccc
Q 021144 51 VSSPHLVRKVHLDYLDAGANIIITA 75 (317)
Q Consensus 51 l~~Pe~V~~iH~~Yl~AGAdiI~Tn 75 (317)
++..+.|.+.+..+-+||||+|.|.
T Consensus 287 iDe~~~~~Esl~~ikRAGAd~IiTY 311 (320)
T cd04824 287 FDLKRAVLEAMTGFRRAGADIIITY 311 (320)
T ss_pred CcHHHHHHHHHHHHHhcCCCEEEee
Confidence 6777899999999999999999974
No 370
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=43.96 E-value=3e+02 Score=26.47 Aligned_cols=38 Identities=26% Similarity=0.281 Sum_probs=26.2
Q ss_pred hCCCCEEEecc---CCC-----HHHHHHHHHHHHHhCCCccEEEEEE
Q 021144 179 NSGADLIAFET---IPN-----KLEAKAYAELLEEEGITIPAWFSFN 217 (317)
Q Consensus 179 ~~gvD~l~~ET---~p~-----~~Ea~a~~~~~~~~~~~~pv~iSf~ 217 (317)
+.|+|+|.+-. -|+ .+|+..+++.+++.. ++|++|-.+
T Consensus 87 ~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eav-d~PL~Id~s 132 (319)
T PRK04452 87 EYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAV-DVPLIIGGS 132 (319)
T ss_pred HhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhC-CCCEEEecC
Confidence 68999998874 442 455777888777653 689865443
No 371
>PF03481 SUA5: Putative GTP-binding controlling metal-binding; InterPro: IPR005145 The function of this domain is unknown, it is found in P32579 from SWISSPROT and its relatives. It is found C-terminal to the IPR006070 from INTERPRO.; PDB: 2EQA_A 3AJE_A 4E1B_A 2YV4_A.
Probab=43.81 E-value=32 Score=28.05 Aligned_cols=44 Identities=23% Similarity=0.121 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHH
Q 021144 162 SLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEE 205 (317)
Q Consensus 162 s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~ 205 (317)
+.+++....-.-++.+-+.|+|.|++|.+|+-.+..|+..-+++
T Consensus 79 d~~~~A~~Lf~~LR~~D~~~~~~I~ie~~~~~~~g~Ai~dRL~R 122 (125)
T PF03481_consen 79 DPEEAARNLFAALRELDELGVDLILIEGPPETGLGLAIMDRLRR 122 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHTT-SEEEEEEESGCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhcCCCEEEEeeCCCcCcHHHHHHHHHH
Confidence 55665555555688888889999999999987777777765554
No 372
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=43.76 E-value=3e+02 Score=26.38 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=30.4
Q ss_pred CCCCCCccccccccC-CChHHHHHHHHHHHHhhcccccccccc
Q 021144 37 GADLNDPLWSAKCLV-SSPHLVRKVHLDYLDAGANIIITASYQ 78 (317)
Q Consensus 37 G~~~~~~lws~~~ll-~~Pe~V~~iH~~Yl~AGAdiI~TnTy~ 78 (317)
|+.+..|+|-+.-.. .+.+.+..+.... +|+=++-|-|..
T Consensus 8 Gl~f~NPl~lAaG~~~~~~~~~~~~~~~g--~G~i~~ktvt~~ 48 (310)
T COG0167 8 GLKFPNPLGLAAGFDGKNGEELDALAALG--FGAIVTKTVTPE 48 (310)
T ss_pred ceecCCCCeEcccCCccCHHHHHHHHhcC--CceEEecCCCCc
Confidence 777788998755545 7888888887776 788787777765
No 373
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=43.71 E-value=2.3e+02 Score=25.04 Aligned_cols=87 Identities=21% Similarity=0.223 Sum_probs=48.5
Q ss_pred HHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcC-
Q 021144 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC- 250 (317)
Q Consensus 172 ~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC- 250 (317)
+.++.+.+.|+|.|.+-.... ...++.+++.+ ++++.+. . +..++.. +.+ .+++.|.+-.
T Consensus 71 ~~~~~~~~~g~d~v~l~~~~~----~~~~~~~~~~~--i~~i~~v--~---------~~~~~~~-~~~-~gad~i~~~~~ 131 (236)
T cd04730 71 ALLEVALEEGVPVVSFSFGPP----AEVVERLKAAG--IKVIPTV--T---------SVEEARK-AEA-AGADALVAQGA 131 (236)
T ss_pred HHHHHHHhCCCCEEEEcCCCC----HHHHHHHHHcC--CEEEEeC--C---------CHHHHHH-HHH-cCCCEEEEeCc
Confidence 456667788999998765432 34455555543 6766543 1 2244333 332 3556665522
Q ss_pred --CC---h--hhhHHHHHHHHhhCCCcEEEEeCCCC
Q 021144 251 --TS---P--RFIHGLILSVRKVTSKPVIIYPNSGE 279 (317)
Q Consensus 251 --~~---p--~~~~~~l~~l~~~~~~pl~vyPNaG~ 279 (317)
.+ + .....+++++++..+.|+++ +.|-
T Consensus 132 ~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~--~GGI 165 (236)
T cd04730 132 EAGGHRGTFDIGTFALVPEVRDAVDIPVIA--AGGI 165 (236)
T ss_pred CCCCCCCccccCHHHHHHHHHHHhCCCEEE--ECCC
Confidence 11 1 12356777887777788654 6663
No 374
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=43.57 E-value=1.1e+02 Score=28.45 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=21.1
Q ss_pred ccCCChHHHHHHHHHHHHhhcccccccccc
Q 021144 49 CLVSSPHLVRKVHLDYLDAGANIIITASYQ 78 (317)
Q Consensus 49 ~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~ 78 (317)
..+++++.+.++=+.--++|..+.....|.
T Consensus 33 c~ie~~~~~~~~A~~lk~~~~k~~r~~~~K 62 (260)
T TIGR01361 33 CSVESEEQIMETARFVKEAGAKILRGGAFK 62 (260)
T ss_pred CccCCHHHHHHHHHHHHHHHHHhccCceec
Confidence 347888888887777777787776654443
No 375
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=43.54 E-value=2.4e+02 Score=25.21 Aligned_cols=171 Identities=20% Similarity=0.200 Sum_probs=84.6
Q ss_pred CCChHHHHHHHHHHHHhhccccccccccccHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCC
Q 021144 51 VSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRIS 130 (317)
Q Consensus 51 l~~Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~ 130 (317)
+++++-+..+ .++|||=|+.+. .|..-|+++. ..+++.+++ ..
T Consensus 7 v~s~~~a~~A----~~~GAdRiELc~------~l~~GGlTPS--~g~i~~~~~-------~~------------------ 49 (201)
T PF03932_consen 7 VESLEDALAA----EAGGADRIELCS------NLEVGGLTPS--LGLIRQARE-------AV------------------ 49 (201)
T ss_dssp ESSHHHHHHH----HHTT-SEEEEEB------TGGGT-B-----HHHHHHHHH-------HT------------------
T ss_pred eCCHHHHHHH----HHcCCCEEEECC------CccCCCcCcC--HHHHHHHHh-------hc------------------
Confidence 4556655555 378999888877 2444567653 233333333 10
Q ss_pred CCCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHH--HHHHHHHHHHHhCC
Q 021144 131 SRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKL--EAKAYAELLEEEGI 208 (317)
Q Consensus 131 ~~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~--Ea~a~~~~~~~~~~ 208 (317)
++-|--=|=|.+. +|- ++.+|+....+ -++.+.+.|+|.|+|--+..-. ...+..+++...+
T Consensus 50 --~ipv~vMIRpr~g----------dF~--Ys~~E~~~M~~-dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~- 113 (201)
T PF03932_consen 50 --DIPVHVMIRPRGG----------DFV--YSDEEIEIMKE-DIRMLRELGADGFVFGALTEDGEIDEEALEELIEAAG- 113 (201)
T ss_dssp --TSEEEEE--SSSS-----------S-----HHHHHHHHH-HHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHT-
T ss_pred --CCceEEEECCCCC----------Ccc--CCHHHHHHHHH-HHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcC-
Confidence 2233344667542 221 46778777555 4888899999999998664211 2233444444443
Q ss_pred CccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCCh--hhhHHHHHHHHhhCCCcEEEEeCCCCcc
Q 021144 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSP--RFIHGLILSVRKVTSKPVIIYPNSGETY 281 (317)
Q Consensus 209 ~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~p--~~~~~~l~~l~~~~~~pl~vyPNaG~~~ 281 (317)
+.|+...-.|+. +.| ..++++.+... +++.|...=..+ ..-...|+++.+.....+-+.|-+|...
T Consensus 114 ~~~~tFHRAfD~---~~d---~~~al~~L~~l-G~~rVLTSGg~~~a~~g~~~L~~lv~~a~~~i~Im~GgGv~~ 181 (201)
T PF03932_consen 114 GMPVTFHRAFDE---VPD---PEEALEQLIEL-GFDRVLTSGGAPTALEGIENLKELVEQAKGRIEIMPGGGVRA 181 (201)
T ss_dssp TSEEEE-GGGGG---SST---HHHHHHHHHHH-T-SEEEESTTSSSTTTCHHHHHHHHHHHTTSSEEEEESS--T
T ss_pred CCeEEEeCcHHH---hCC---HHHHHHHHHhc-CCCEEECCCCCCCHHHHHHHHHHHHHHcCCCcEEEecCCCCH
Confidence 466665444432 222 56677776553 677776554321 1123445555444445678899888643
No 376
>PRK00208 thiG thiazole synthase; Reviewed
Probab=43.48 E-value=2.8e+02 Score=25.84 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=20.7
Q ss_pred CCChHHHHHHHHHHHHhhccccccccccccH
Q 021144 51 VSSPHLVRKVHLDYLDAGANIIITASYQATI 81 (317)
Q Consensus 51 l~~Pe~V~~iH~~Yl~AGAdiI~TnTy~as~ 81 (317)
..+|+++++. ...+|++|++.+.-+.+.
T Consensus 20 y~s~~~~~~a---i~asg~~ivTvalrR~~~ 47 (250)
T PRK00208 20 YPSPQVMQEA---IEASGAEIVTVALRRVNL 47 (250)
T ss_pred CCCHHHHHHH---HHHhCCCeEEEEEEeecC
Confidence 4677777766 456899999988866553
No 377
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=43.44 E-value=3.1e+02 Score=26.38 Aligned_cols=22 Identities=9% Similarity=0.194 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHH-------hhcccccccc
Q 021144 55 HLVRKVHLDYLD-------AGANIIITAS 76 (317)
Q Consensus 55 e~V~~iH~~Yl~-------AGAdiI~TnT 76 (317)
|.|.++..+|.+ ||.|-|.-|-
T Consensus 134 ~eI~~ii~~f~~AA~ra~~aGfDgVeih~ 162 (343)
T cd04734 134 EDIEEIIAAFADAARRCQAGGLDGVELQA 162 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 567788888876 4788887765
No 378
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=43.40 E-value=2.3e+02 Score=24.81 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCCEEEe-----ccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcC
Q 021144 170 HRRRVLILANSGADLIAF-----ETIPNKLEAKAYAELLEEEGITIPAWFSFNSKD 220 (317)
Q Consensus 170 h~~qi~~l~~~gvD~l~~-----ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~ 220 (317)
+.+.++.+.++|+|.|=+ ...|+.......++.+++..+ .|+-+-+.+.+
T Consensus 18 ~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~-~~~~v~l~v~d 72 (220)
T PRK05581 18 LGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTK-LPLDVHLMVEN 72 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCC-CcEEEEeeeCC
Confidence 455788899999999988 655553322223334444331 44434444433
No 379
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=43.32 E-value=96 Score=29.69 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=27.3
Q ss_pred hhhHHHHHHHHhhC--CCcEEEEeCCCCccccccccccccCCCChhhHHHHHHHHHHccc
Q 021144 254 RFIHGLILSVRKVT--SKPVIIYPNSGETYNAELKKWVVSFSLHFFPLELILNPFASCRL 311 (317)
Q Consensus 254 ~~~~~~l~~l~~~~--~~pl~vyPNaG~~~d~~~~~w~~~~~~~~~~~~~~~~~w~~~~~ 311 (317)
..+..+|+.+++.. +.||++.-|.-+.. ... .++++..++++.+.+.|+
T Consensus 200 rf~~EiI~aIR~avG~d~~v~vris~~~~~---~~g------~~~eea~~ia~~Le~~Gv 250 (338)
T cd04733 200 RLLLEIYDAIRAAVGPGFPVGIKLNSADFQ---RGG------FTEEDALEVVEALEEAGV 250 (338)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEEcHHHcC---CCC------CCHHHHHHHHHHHHHcCC
Confidence 34456666666665 35777777752211 111 245566666766666663
No 380
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=43.29 E-value=3e+02 Score=26.24 Aligned_cols=113 Identities=18% Similarity=0.236 Sum_probs=63.8
Q ss_pred CCCCHHHH---HHHHHHHHHHHHhCCCCEEEec------------cCCC-------------HHHHHHHHHHHHHh-CCC
Q 021144 159 DAVSLETL---KEFHRRRVLILANSGADLIAFE------------TIPN-------------KLEAKAYAELLEEE-GIT 209 (317)
Q Consensus 159 ~~~s~~el---~~~h~~qi~~l~~~gvD~l~~E------------T~p~-------------~~Ea~a~~~~~~~~-~~~ 209 (317)
..++.+|+ .+.|.+-++...++|.|.|=+= ...+ ..-+..+++++++. +.+
T Consensus 137 ~~mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d 216 (338)
T cd04733 137 RAMTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPG 216 (338)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 34676664 5566666777778999999432 1111 22234566667764 345
Q ss_pred ccEEEEEEEcCCCcccCCCcHHHHHHHhhc--CCCceEEEEcCC---Chh--------------hhHHHHHHHHhhCCCc
Q 021144 210 IPAWFSFNSKDGINVVSGDSILECASIADS--CEQVVAVGINCT---SPR--------------FIHGLILSVRKVTSKP 270 (317)
Q Consensus 210 ~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~--~~~~~aiGvNC~---~p~--------------~~~~~l~~l~~~~~~p 270 (317)
.|+.+-++..+ ....|.+++++++.+.. ..+++.|=|-.. .|. ......+.+++.++.|
T Consensus 217 ~~v~vris~~~--~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iP 294 (338)
T cd04733 217 FPVGIKLNSAD--FQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTP 294 (338)
T ss_pred CeEEEEEcHHH--cCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCC
Confidence 67777776432 23456677776555431 235666554221 111 1135667788888888
Q ss_pred EEE
Q 021144 271 VII 273 (317)
Q Consensus 271 l~v 273 (317)
+++
T Consensus 295 Vi~ 297 (338)
T cd04733 295 LMV 297 (338)
T ss_pred EEE
Confidence 765
No 381
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=43.26 E-value=1.7e+02 Score=27.04 Aligned_cols=63 Identities=16% Similarity=0.150 Sum_probs=43.4
Q ss_pred HHHHHHhCCCCEEEec-cCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcC
Q 021144 173 RVLILANSGADLIAFE-TIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (317)
Q Consensus 173 qi~~l~~~gvD~l~~E-T~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC 250 (317)
|+....++|+|.+++- +.-+..+++.+++.+++.+ +-+++-+ .+.+++-.... .+++.||+|=
T Consensus 125 qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lG--l~~lvev-----------h~~~E~~~A~~--~gadiIgin~ 188 (260)
T PRK00278 125 QIYEARAAGADAILLIVAALDDEQLKELLDYAHSLG--LDVLVEV-----------HDEEELERALK--LGAPLIGINN 188 (260)
T ss_pred HHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcC--CeEEEEe-----------CCHHHHHHHHH--cCCCEEEECC
Confidence 6777888999999776 4445678888888888765 5555444 12344443333 4789999995
No 382
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties
Probab=43.26 E-value=1.9e+02 Score=28.15 Aligned_cols=74 Identities=12% Similarity=0.066 Sum_probs=44.3
Q ss_pred HHHHHHhC--CCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCc-HHH---HHHHhhcCCCceEE
Q 021144 173 RVLILANS--GADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDS-ILE---CASIADSCEQVVAV 246 (317)
Q Consensus 173 qi~~l~~~--gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~-l~~---a~~~~~~~~~~~ai 246 (317)
++..+++. ++++.. .+.+.++++.+-++.++.+ +++.+-+.++. +..+.|-. .++ .++.+....++...
T Consensus 88 ~l~~l~~~~~~~~i~~--~vds~~~l~~L~~~a~~~g--~~~~v~i~vn~-g~~R~G~~~~~~~~~l~~~i~~~~~l~l~ 162 (382)
T cd06818 88 RLAALLAADPDFEFFC--LVDSVDNVRALAAFFAALE--RPLNVLIELGV-PGGRTGVRTEAEALALADAIAASPALRLA 162 (382)
T ss_pred HHHHhhhcCCCCCEEE--EECCHHHHHHHHHHHHhcC--CceEEEEEECC-CCCCCCCCCHHHHHHHHHHHHcCCCceEe
Confidence 34455543 455422 5567888888877777655 55555555543 34456753 333 44444445678899
Q ss_pred EEcCC
Q 021144 247 GINCT 251 (317)
Q Consensus 247 GvNC~ 251 (317)
|+-|-
T Consensus 163 Gi~~~ 167 (382)
T cd06818 163 GVEGY 167 (382)
T ss_pred EEEee
Confidence 99995
No 383
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=43.22 E-value=2.1e+02 Score=24.52 Aligned_cols=13 Identities=38% Similarity=0.514 Sum_probs=8.4
Q ss_pred HHHHhCCCCEEEe
Q 021144 175 LILANSGADLIAF 187 (317)
Q Consensus 175 ~~l~~~gvD~l~~ 187 (317)
....+.|+|++.+
T Consensus 110 ~~a~~~g~dyi~~ 122 (196)
T TIGR00693 110 AEAEAEGADYIGF 122 (196)
T ss_pred HHHhHcCCCEEEE
Confidence 3345578888864
No 384
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=43.18 E-value=2.4e+02 Score=25.00 Aligned_cols=77 Identities=13% Similarity=0.207 Sum_probs=44.9
Q ss_pred HHHHHhCCCCEEEeccCCCH-----HHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEE
Q 021144 174 VLILANSGADLIAFETIPNK-----LEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET~p~~-----~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGv 248 (317)
++.+.+.|+|.+.+=++... .....+.++.++. +.|++++-- + .+++++-+.+. .+++.+-+
T Consensus 36 a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~--~~pv~~~GG------I---~~~ed~~~~~~--~Ga~~vil 102 (233)
T PRK00748 36 AKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKAV--DIPVQVGGG------I---RSLETVEALLD--AGVSRVII 102 (233)
T ss_pred HHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHHC--CCCEEEcCC------c---CCHHHHHHHHH--cCCCEEEE
Confidence 44455578998887776433 2233333444443 488886321 1 35666665555 36778888
Q ss_pred cCC---ChhhhHHHHHHH
Q 021144 249 NCT---SPRFIHGLILSV 263 (317)
Q Consensus 249 NC~---~p~~~~~~l~~l 263 (317)
++. .|+.+..+.+.+
T Consensus 103 g~~~l~~~~~l~ei~~~~ 120 (233)
T PRK00748 103 GTAAVKNPELVKEACKKF 120 (233)
T ss_pred CchHHhCHHHHHHHHHHh
Confidence 885 455666665555
No 385
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=43.11 E-value=1.8e+02 Score=25.94 Aligned_cols=81 Identities=21% Similarity=0.199 Sum_probs=47.4
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEE---c
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI---N 249 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGv---N 249 (317)
|++...++|+|++.. |...+ .++++.+..+ .|++.+ ..+++++.+... .+++.|++ +
T Consensus 75 ~~~~a~~aGA~fivs---p~~~~--~v~~~~~~~~--~~~~~G-----------~~t~~E~~~A~~--~Gad~vk~Fpa~ 134 (206)
T PRK09140 75 QVDRLADAGGRLIVT---PNTDP--EVIRRAVALG--MVVMPG-----------VATPTEAFAALR--AGAQALKLFPAS 134 (206)
T ss_pred HHHHHHHcCCCEEEC---CCCCH--HHHHHHHHCC--CcEEcc-----------cCCHHHHHHHHH--cCCCEEEECCCC
Confidence 566777899999986 33222 3334444433 677754 335677766554 47888888 4
Q ss_pred CCChhhhHHHHHHHHhhC--CCcEEEEeCCCC
Q 021144 250 CTSPRFIHGLILSVRKVT--SKPVIIYPNSGE 279 (317)
Q Consensus 250 C~~p~~~~~~l~~l~~~~--~~pl~vyPNaG~ 279 (317)
..+|+. ++.++... +.| ++|=+|-
T Consensus 135 ~~G~~~----l~~l~~~~~~~ip--vvaiGGI 160 (206)
T PRK09140 135 QLGPAG----IKALRAVLPPDVP--VFAVGGV 160 (206)
T ss_pred CCCHHH----HHHHHhhcCCCCe--EEEECCC
Confidence 444444 44444443 355 4555564
No 386
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=43.04 E-value=1.2e+02 Score=29.10 Aligned_cols=63 Identities=10% Similarity=0.080 Sum_probs=41.7
Q ss_pred HHHHHHh------CCCCEEEeccC--------CCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhh
Q 021144 173 RVLILAN------SGADLIAFETI--------PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (317)
Q Consensus 173 qi~~l~~------~gvD~l~~ET~--------p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~ 238 (317)
++...++ +|+|.|++..| .+.++++.+++.++. ..| +.. .-|-+++.+.+++.
T Consensus 215 ea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~~~---~~~--lEa--------SGGIt~~ni~~yA~ 281 (308)
T PLN02716 215 EVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELING---RFE--TEA--------SGNVTLDTVHKIGQ 281 (308)
T ss_pred HHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhhCC---Cce--EEE--------ECCCCHHHHHHHHH
Confidence 4444566 89999999999 367888887775542 233 222 24677777777664
Q ss_pred cCCCceEEEEcC
Q 021144 239 SCEQVVAVGINC 250 (317)
Q Consensus 239 ~~~~~~aiGvNC 250 (317)
.+++.|-+-.
T Consensus 282 --tGVD~Is~Ga 291 (308)
T PLN02716 282 --TGVTYISSGA 291 (308)
T ss_pred --cCCCEEEeCc
Confidence 4777776655
No 387
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=43.04 E-value=2.6e+02 Score=25.47 Aligned_cols=95 Identities=15% Similarity=0.202 Sum_probs=55.8
Q ss_pred HHHHHHhCCCCEEEe--ccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcC
Q 021144 173 RVLILANSGADLIAF--ETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (317)
Q Consensus 173 qi~~l~~~gvD~l~~--ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC 250 (317)
.++.|.++|+|.|.| |+.. .....+++.+|+.+ ..+-+.+ ..+|+++.....+.....+....+|=
T Consensus 74 ~i~~~~~aGad~it~H~Ea~~--~~~~~~i~~Ik~~G--~kaGlal--------nP~T~~~~l~~~l~~vD~VLvMsV~P 141 (229)
T PRK09722 74 YIDQLADAGADFITLHPETIN--GQAFRLIDEIRRAG--MKVGLVL--------NPETPVESIKYYIHLLDKITVMTVDP 141 (229)
T ss_pred HHHHHHHcCCCEEEECccCCc--chHHHHHHHHHHcC--CCEEEEe--------CCCCCHHHHHHHHHhcCEEEEEEEcC
Confidence 466788899998865 6443 12445677788876 5555444 24678877666665433444555554
Q ss_pred C--ChhhhHHHHHHHHhh------CCCcEEEEeCCCC
Q 021144 251 T--SPRFIHGLILSVRKV------TSKPVIIYPNSGE 279 (317)
Q Consensus 251 ~--~p~~~~~~l~~l~~~------~~~pl~vyPNaG~ 279 (317)
. +-..+...++++++. .+..+.++-++|-
T Consensus 142 Gf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI 178 (229)
T PRK09722 142 GFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSC 178 (229)
T ss_pred CCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 2 224455555444432 1234778888874
No 388
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=42.69 E-value=2e+02 Score=30.85 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=57.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCC---HHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCc
Q 021144 153 YSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPN---KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDS 229 (317)
Q Consensus 153 Y~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~---~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~ 229 (317)
|+|+..++--..--.+||...++.|+++|.-++-+-.|.- .+-++-++.++++..+++|+-|.- +-.+|+-
T Consensus 703 YtGDv~dp~rtKY~L~YY~nlad~lV~agtHiL~IKDMAG~lKP~aa~lLi~alRdk~PdlPiHvHt------HDtsGag 776 (1176)
T KOG0369|consen 703 YTGDVLDPSRTKYNLDYYLNLADKLVKAGTHILGIKDMAGVLKPEAAKLLIGALRDKFPDLPIHVHT------HDTSGAG 776 (1176)
T ss_pred eccccCCcccccccHHHHHHHHHHHHhccCeEEeehhhhcccCHHHHHHHHHHHHhhCCCCceEEec------cCCccHH
Confidence 6666544222233457899999999999999998877654 344566778888887899987653 2226766
Q ss_pred HHHHHHHhhcCCCceEEEE
Q 021144 230 ILECASIADSCEQVVAVGI 248 (317)
Q Consensus 230 l~~a~~~~~~~~~~~aiGv 248 (317)
++.....+. .+.+.|-+
T Consensus 777 VAsMlaca~--AGADVVDv 793 (1176)
T KOG0369|consen 777 VASMLACAL--AGADVVDV 793 (1176)
T ss_pred HHHHHHHHH--cCCceeee
Confidence 655444433 35555444
No 389
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=42.52 E-value=1.8e+02 Score=24.30 Aligned_cols=73 Identities=11% Similarity=0.114 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCC---hhhhHHHHHHHHhhCCCcEEE
Q 021144 197 KAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTS---PRFIHGLILSVRKVTSKPVII 273 (317)
Q Consensus 197 ~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~---p~~~~~~l~~l~~~~~~pl~v 273 (317)
..++..+++.+...-.+||. -+ . .+.++.|+++.+.+.+...+|++=.-+ |+....++++.+. .||+++
T Consensus 15 ~~~~~~~~~~g~g~s~~vs~--Gn--~--~dv~~~d~l~~~~~D~~t~~I~ly~E~~~d~~~f~~~~~~a~~--~KPVv~ 86 (138)
T PF13607_consen 15 TAILDWAQDRGIGFSYVVSV--GN--E--ADVDFADLLEYLAEDPDTRVIVLYLEGIGDGRRFLEAARRAAR--RKPVVV 86 (138)
T ss_dssp HHHHHHHHHTT-EESEEEE---TT-----SSS-HHHHHHHHCT-SS--EEEEEES--S-HHHHHHHHHHHCC--CS-EEE
T ss_pred HHHHHHHHHcCCCeeEEEEe--Cc--c--ccCCHHHHHHHHhcCCCCCEEEEEccCCCCHHHHHHHHHHHhc--CCCEEE
Confidence 34556666655233345444 22 2 266899999999765666666665533 4444444444443 499877
Q ss_pred EeCC
Q 021144 274 YPNS 277 (317)
Q Consensus 274 yPNa 277 (317)
|--.
T Consensus 87 lk~G 90 (138)
T PF13607_consen 87 LKAG 90 (138)
T ss_dssp EE--
T ss_pred EeCC
Confidence 7644
No 390
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=42.39 E-value=1.1e+02 Score=29.96 Aligned_cols=97 Identities=11% Similarity=0.030 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHH-------------------HHHhCCCccEEEEEEEcCCCcccCCC
Q 021144 168 EFHRRRVLILANSGADLIAFETIPNKLEAKAYAEL-------------------LEEEGITIPAWFSFNSKDGINVVSGD 228 (317)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~-------------------~~~~~~~~pv~iSf~~~~~~~l~~G~ 228 (317)
+.|+...+...+.|++++. |+.+...+..+.++ +.++ ++||++|= |...+-+
T Consensus 169 e~l~~L~~~~~~~Gl~~~t--~v~d~~~~~~l~~~vd~lkI~s~~~~n~~LL~~~a~~--gkPVilk~-----G~~~t~~ 239 (360)
T PRK12595 169 EGLKILKQVADEYGLAVIS--EIVNPADVEVALDYVDVIQIGARNMQNFELLKAAGRV--NKPVLLKR-----GLSATIE 239 (360)
T ss_pred HHHHHHHHHHHHcCCCEEE--eeCCHHHHHHHHHhCCeEEECcccccCHHHHHHHHcc--CCcEEEeC-----CCCCCHH
Confidence 3444444455556666654 55555555544332 2222 47888653 2112223
Q ss_pred cHHHHHHHhhcCCCceEEEEc-CCC--h----h-hhHHHHHHHHhhCCCcEEE
Q 021144 229 SILECASIADSCEQVVAVGIN-CTS--P----R-FIHGLILSVRKVTSKPVII 273 (317)
Q Consensus 229 ~l~~a~~~~~~~~~~~aiGvN-C~~--p----~-~~~~~l~~l~~~~~~pl~v 273 (317)
.+..|++.+........+.+- |++ | . .=...+..+++.+..|+++
T Consensus 240 e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~~~PV~~ 292 (360)
T PRK12595 240 EFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQETHLPVMV 292 (360)
T ss_pred HHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHhCCCEEE
Confidence 345566666543333455565 753 2 1 2245667777767788666
No 391
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=42.21 E-value=3.2e+02 Score=26.29 Aligned_cols=95 Identities=13% Similarity=0.092 Sum_probs=52.7
Q ss_pred HHHHHHHHhCC--CCEEEeccCCC-HHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEE
Q 021144 171 RRRVLILANSG--ADLIAFETIPN-KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVG 247 (317)
Q Consensus 171 ~~qi~~l~~~g--vD~l~~ET~p~-~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiG 247 (317)
.+++..|+++| +|+|.+-+-.- -..+...++.+++.. +.|.++.=.+ . +.+.+...++ .++++|=
T Consensus 96 ~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~-p~~~vi~GnV------~---t~e~a~~l~~--aGad~I~ 163 (321)
T TIGR01306 96 YEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHL-PDSFVIAGNV------G---TPEAVRELEN--AGADATK 163 (321)
T ss_pred HHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhC-CCCEEEEecC------C---CHHHHHHHHH--cCcCEEE
Confidence 36788899988 79999987432 334444566666643 3554443321 1 4555555554 3566643
Q ss_pred Ec------C--------CChhhhHHHHHHHHhhCCCcEEEEeCCCC
Q 021144 248 IN------C--------TSPRFIHGLILSVRKVTSKPVIIYPNSGE 279 (317)
Q Consensus 248 vN------C--------~~p~~~~~~l~~l~~~~~~pl~vyPNaG~ 279 (317)
+- | ..+.....++.+.++..+.| |..++|-
T Consensus 164 V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~~~p--VIadGGI 207 (321)
T TIGR01306 164 VGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKP--IIADGGI 207 (321)
T ss_pred ECCCCCccccceeeeccCCCchHHHHHHHHHHhcCCe--EEEECCc
Confidence 22 3 12222235566666666666 4556663
No 392
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=42.15 E-value=2.8e+02 Score=25.53 Aligned_cols=141 Identities=17% Similarity=0.114 Sum_probs=75.5
Q ss_pred ChHHHHHHHHHHHHhhccccccccccccHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCC
Q 021144 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSR 132 (317)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~ 132 (317)
+.+..++.-+.++++|++-|..+-...-. +.++.+|-+++++.+++.+. ++
T Consensus 19 D~~~~~~~i~~l~~~Gv~gl~v~GstGE~-----~~lt~~Er~~l~~~~~~~~~------------------------~~ 69 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVVCGTTGES-----PTLSDEEHEAVIEAVVEAVN------------------------GR 69 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcch-----hhCCHHHHHHHHHHHHHHhC------------------------CC
Confidence 45677777777888999987766222111 13465666677666554331 12
Q ss_pred CeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccC----CCHHHHHHHHHHHHHhCC
Q 021144 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETI----PNKLEAKAYAELLEEEGI 208 (317)
Q Consensus 133 ~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~----p~~~Ea~a~~~~~~~~~~ 208 (317)
-.+++| +|. .+.++. .++++...+.|+|.+++-.= ++-+|+..-.+.+.+. .
T Consensus 70 ~~vi~g-v~~------------------~~~~~~----~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~-~ 125 (284)
T cd00950 70 VPVIAG-TGS------------------NNTAEA----IELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEA-T 125 (284)
T ss_pred CcEEec-cCC------------------ccHHHH----HHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhc-C
Confidence 234554 332 133444 34677788899998876521 2345555444444443 3
Q ss_pred CccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCC
Q 021144 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTS 252 (317)
Q Consensus 209 ~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~ 252 (317)
++|+++-= . ...+-..-++....+.+ +. +..+||-.++
T Consensus 126 ~~pi~lYn-~--P~~~g~~ls~~~~~~L~-~~--p~v~giK~s~ 163 (284)
T cd00950 126 DLPVILYN-V--PGRTGVNIEPETVLRLA-EH--PNIVGIKEAT 163 (284)
T ss_pred CCCEEEEE-C--hhHhCCCCCHHHHHHHh-cC--CCEEEEEECC
Confidence 68998542 1 11111123444333333 32 4577777654
No 393
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=42.13 E-value=3e+02 Score=25.81 Aligned_cols=111 Identities=13% Similarity=0.147 Sum_probs=63.6
Q ss_pred ChHHHHHHHHHHHHhhccccccccccccHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCC
Q 021144 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSR 132 (317)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~ 132 (317)
+.+.+++.-+-+++.|.+-|..+--..-.. -++.+|-.++++.+++.+. ++
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~GstGE~~-----~Ls~~Er~~l~~~~~~~~~------------------------g~ 69 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVGGTSGEPG-----SLTLEERKQAIENAIDQIA------------------------GR 69 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcccc-----cCCHHHHHHHHHHHHHHhC------------------------CC
Confidence 456788888888999998666544332222 3466667777776665431 22
Q ss_pred CeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccC----CCHHHHHHHHHHHHHhCC
Q 021144 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETI----PNKLEAKAYAELLEEEGI 208 (317)
Q Consensus 133 ~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~----p~~~Ea~a~~~~~~~~~~ 208 (317)
-..|+| +|. .+.++..+ +++...+.|+|.+++-+= ++-+++..-.+.+.+..+
T Consensus 70 ~pvi~g-v~~------------------~~t~~ai~----~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~ 126 (294)
T TIGR02313 70 IPFAPG-TGA------------------LNHDETLE----LTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVP 126 (294)
T ss_pred CcEEEE-CCc------------------chHHHHHH----HHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhcc
Confidence 334555 332 13333332 455567789999987652 344555554444443322
Q ss_pred CccEEEE
Q 021144 209 TIPAWFS 215 (317)
Q Consensus 209 ~~pv~iS 215 (317)
++|+++-
T Consensus 127 ~lpv~iY 133 (294)
T TIGR02313 127 DFPIIIY 133 (294)
T ss_pred CCCEEEE
Confidence 5888754
No 394
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=42.04 E-value=1.5e+02 Score=28.03 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=19.4
Q ss_pred ccCCCcHHHHHHHhhcCCCceEEEEcCCC
Q 021144 224 VVSGDSILECASIADSCEQVVAVGINCTS 252 (317)
Q Consensus 224 l~~G~~l~~a~~~~~~~~~~~aiGvNC~~ 252 (317)
|-+|.+++.+.+.++ .+...|.+-+++
T Consensus 84 LDHg~~~e~i~~ai~--~GftSVM~DgS~ 110 (286)
T PRK08610 84 LDHGSSFEKCKEAID--AGFTSVMIDASH 110 (286)
T ss_pred CCCCCCHHHHHHHHH--cCCCEEEEeCCC
Confidence 346777877777666 367788888885
No 395
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=41.88 E-value=2.7e+02 Score=25.29 Aligned_cols=106 Identities=12% Similarity=0.086 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHHHHHh---CCC---CEEEeccCCCH---------------HHHHHHHHHHHHhCCCccEEEEEEEcC
Q 021144 162 SLETLKEFHRRRVLILAN---SGA---DLIAFETIPNK---------------LEAKAYAELLEEEGITIPAWFSFNSKD 220 (317)
Q Consensus 162 s~~el~~~h~~qi~~l~~---~gv---D~l~~ET~p~~---------------~Ea~a~~~~~~~~~~~~pv~iSf~~~~ 220 (317)
+.+++.+..+..++..+. ..+ |+ +-|.+.+- +-+..+.+++++..++.++++. +
T Consensus 51 ~~~~~~~~~~~~i~~v~~ry~g~i~~wdV-~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~N----d 125 (254)
T smart00633 51 SKETLLARLENHIKTVVGRYKGKIYAWDV-VNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYN----D 125 (254)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCcceEEEE-eeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEe----c
Confidence 466777777777766654 223 43 34655321 3345667778887777788775 1
Q ss_pred CCcccCC---CcHHHHHHHhhc-CCCceEEEEcCC------ChhhhHHHHHHHHhhCCCcEEE
Q 021144 221 GINVVSG---DSILECASIADS-CEQVVAVGINCT------SPRFIHGLILSVRKVTSKPVII 273 (317)
Q Consensus 221 ~~~l~~G---~~l~~a~~~~~~-~~~~~aiGvNC~------~p~~~~~~l~~l~~~~~~pl~v 273 (317)
-+....+ ..+.+.++.+.+ ...+++||+.|. .+..+.+.|+.+... .+||.+
T Consensus 126 y~~~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~~~~-g~pi~i 187 (254)
T smart00633 126 YNTEEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRFASL-GLEIQI 187 (254)
T ss_pred cCCcCccHHHHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHHHHc-CCceEE
Confidence 1111111 123344444433 335899999985 135677778877664 778654
No 396
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=41.80 E-value=74 Score=24.90 Aligned_cols=18 Identities=11% Similarity=0.178 Sum_probs=9.5
Q ss_pred HHHhCCCCEEEeccCCCH
Q 021144 176 ILANSGADLIAFETIPNK 193 (317)
Q Consensus 176 ~l~~~gvD~l~~ET~p~~ 193 (317)
.|.+.|.|+.++....+.
T Consensus 23 ~l~~~G~~v~~~d~~~~~ 40 (121)
T PF02310_consen 23 YLRKAGHEVDILDANVPP 40 (121)
T ss_dssp HHHHTTBEEEEEESSB-H
T ss_pred HHHHCCCeEEEECCCCCH
Confidence 344456666666554444
No 397
>TIGR01346 isocit_lyase isocitrate lyase. Isocitrate lyase and malate synthase are the enzymes of the glyoxylate shunt, a pathway associated with the TCA cycle.
Probab=41.77 E-value=42 Score=34.37 Aligned_cols=36 Identities=33% Similarity=0.236 Sum_probs=29.5
Q ss_pred HHHHHhCCCCEEEecc-CCCHHHHHHHHHHHHHhCCCc
Q 021144 174 VLILANSGADLIAFET-IPNKLEAKAYAELLEEEGITI 210 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET-~p~~~Ea~a~~~~~~~~~~~~ 210 (317)
..+++ ..+|+|+.|| -|++.+++...+.+++..+++
T Consensus 373 ~~a~A-PyaDliW~ET~~Pdl~~A~~Fa~~v~~~~P~k 409 (527)
T TIGR01346 373 AKAFA-PYADLIWMETSTPDLELAKKFAEGVKSKFPDQ 409 (527)
T ss_pred HHhcC-ccccEEEecCCCCCHHHHHHHHHHHHHHCCCC
Confidence 33443 5789999999 899999999999999876554
No 398
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=41.55 E-value=3.1e+02 Score=25.87 Aligned_cols=197 Identities=15% Similarity=0.074 Sum_probs=102.6
Q ss_pred ChHHHHHHHHHHHHhhccccccccccccHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCC
Q 021144 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSR 132 (317)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~ 132 (317)
+.+.++++-+..+++|.|=|..+--..-... ++.+|-.++++.+++.+ . ++
T Consensus 23 D~~a~~~lv~~li~~Gv~gi~~~GttGE~~~-----Ls~eEr~~v~~~~v~~~----~--------------------gr 73 (299)
T COG0329 23 DEEALRRLVEFLIAAGVDGLVVLGTTGESPT-----LTLEERKEVLEAVVEAV----G--------------------GR 73 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCccchh-----cCHHHHHHHHHHHHHHH----C--------------------CC
Confidence 5678999999999999995554433332222 35566666655555443 1 22
Q ss_pred CeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecc----CCCHHHHHHHHHHHHHhCC
Q 021144 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFET----IPNKLEAKAYAELLEEEGI 208 (317)
Q Consensus 133 ~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET----~p~~~Ea~a~~~~~~~~~~ 208 (317)
-+.|+| +|.. +.++..+ +++...+.|+|.++.=| =|+.+++..=..++.+..
T Consensus 74 vpviaG-~g~~------------------~t~eai~----lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~- 129 (299)
T COG0329 74 VPVIAG-VGSN------------------STAEAIE----LAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAV- 129 (299)
T ss_pred CcEEEe-cCCC------------------cHHHHHH----HHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhc-
Confidence 336776 2221 3344443 45566778999998654 345666666666665554
Q ss_pred CccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCChhhhHHHHHHHHhhCCCcEEEEeCCCCc---ccccc
Q 021144 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGET---YNAEL 285 (317)
Q Consensus 209 ~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~---~d~~~ 285 (317)
++|+++= +-..++..-.+++...+... .+++.+|=-.+..-..+..++...... ..++.-++-... ..-..
T Consensus 130 ~lPvilY---N~P~~tg~~l~~e~i~~la~-~~nivgiKd~~gd~~~~~~~~~~~~~~--~f~v~~G~d~~~~~~~~~G~ 203 (299)
T COG0329 130 DLPVILY---NIPSRTGVDLSPETIARLAE-HPNIVGVKDSSGDLDRLEEIIAALGDR--DFIVLSGDDELALPALLLGA 203 (299)
T ss_pred CCCEEEE---eCccccCCCCCHHHHHHHhc-CCCEEEEEeCCcCHHHHHHHHHhcCcc--CeeEEeCchHHHHHHHhCCC
Confidence 6897642 11223333345555555444 345444433344444444443332211 123333332211 11122
Q ss_pred cccccc-CCCChhhHHHHHHHHHH
Q 021144 286 KKWVVS-FSLHFFPLELILNPFAS 308 (317)
Q Consensus 286 ~~w~~~-~~~~~~~~~~~~~~w~~ 308 (317)
+.|.+. ....|+.+.+....|.+
T Consensus 204 ~G~is~~~N~~p~~~~~l~~~~~~ 227 (299)
T COG0329 204 DGVISVTANVAPELAVELYRAAKA 227 (299)
T ss_pred CeEEecccccCHHHHHHHHHHHHc
Confidence 445432 34678888777766643
No 399
>PLN02892 isocitrate lyase
Probab=41.52 E-value=45 Score=34.51 Aligned_cols=31 Identities=39% Similarity=0.397 Sum_probs=27.6
Q ss_pred CCCCEEEecc-CCCHHHHHHHHHHHHHhCCCc
Q 021144 180 SGADLIAFET-IPNKLEAKAYAELLEEEGITI 210 (317)
Q Consensus 180 ~gvD~l~~ET-~p~~~Ea~a~~~~~~~~~~~~ 210 (317)
..+|+|++|| -|++.+++...+.+++..+++
T Consensus 399 PyaDliW~ET~~Pdl~~A~~Fa~~V~~~~P~k 430 (570)
T PLN02892 399 PYADLIWMETASPDLAEATKFAEGVKAKHPEI 430 (570)
T ss_pred cccCEEEecCCCCCHHHHHHHHHHHHHhCCCC
Confidence 5799999999 899999999999999876555
No 400
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=41.41 E-value=3.1e+02 Score=25.77 Aligned_cols=103 Identities=12% Similarity=0.088 Sum_probs=60.6
Q ss_pred HHHHHHhCCCCEEEec-cCCCHHHHHH----HHHHHHHhCCCccEEEEEEEcC-----CCcc---cCCCcHHHHHHHhhc
Q 021144 173 RVLILANSGADLIAFE-TIPNKLEAKA----YAELLEEEGITIPAWFSFNSKD-----GINV---VSGDSILECASIADS 239 (317)
Q Consensus 173 qi~~l~~~gvD~l~~E-T~p~~~Ea~a----~~~~~~~~~~~~pv~iSf~~~~-----~~~l---~~G~~l~~a~~~~~~ 239 (317)
.++..+++|++.+.+- ..-+.+|-.. +++.+++.+ .+ +-.-+.. +... ..-++++++.+.+..
T Consensus 89 ~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~g--v~--Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~ 164 (282)
T TIGR01859 89 SCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKG--VS--VEAELGTLGGIEDGVDEKEAELADPDEAEQFVKE 164 (282)
T ss_pred HHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcC--CE--EEEeeCCCcCccccccccccccCCHHHHHHHHHH
Confidence 4555567899988774 3344554433 333334433 32 2222211 1100 123588888887764
Q ss_pred CCCceEEEEcCC--C------hhhhHHHHHHHHhhCCCcEEEEeCCCCc
Q 021144 240 CEQVVAVGINCT--S------PRFIHGLILSVRKVTSKPVIIYPNSGET 280 (317)
Q Consensus 240 ~~~~~aiGvNC~--~------p~~~~~~l~~l~~~~~~pl~vyPNaG~~ 280 (317)
.+++.+++.+. + |..=.+.|+++++..+.||++.--+|..
T Consensus 165 -tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~ 212 (282)
T TIGR01859 165 -TGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIP 212 (282)
T ss_pred -HCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCC
Confidence 47888887652 2 4444667888888889999888766743
No 401
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=41.15 E-value=2e+02 Score=25.53 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=26.9
Q ss_pred HHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhC
Q 021144 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEG 207 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~ 207 (317)
++.+.+.|+|++-+=......-++.+++.+++.+
T Consensus 69 ~~~~~~~gad~vTvh~~~g~~~l~~~~~~~~~~~ 102 (213)
T TIGR01740 69 YESKIKQGADMVNVHGVAGSESVEAAKEAASEGG 102 (213)
T ss_pred HHHHHhcCCCEEEEcCCCCHHHHHHHHHHhhcCC
Confidence 3445679999999998888877888888877654
No 402
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=40.92 E-value=2.3e+02 Score=26.84 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=42.4
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEc
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGIN 249 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvN 249 (317)
|++..+++|+|+|++--|+ .+|++.+++.+. . ...+.+..+ -|-+++.+-.+.. .+++.|-+-
T Consensus 200 ~~~eAl~agaDiImLDNm~-~e~~~~av~~l~-~--~~~~~lEaS--------GgIt~~ni~~yA~--tGVD~IS~g 262 (280)
T COG0157 200 EAEEALEAGADIIMLDNMS-PEELKEAVKLLG-L--AGRALLEAS--------GGITLENIREYAE--TGVDVISVG 262 (280)
T ss_pred HHHHHHHcCCCEEEecCCC-HHHHHHHHHHhc-c--CCceEEEEe--------CCCCHHHHHHHhh--cCCCEEEeC
Confidence 4445566999999999886 788888888762 2 245665542 4667776666654 477766554
No 403
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=40.81 E-value=3e+02 Score=25.54 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=20.8
Q ss_pred CCChHHHHHHHHHHHHhhccccccccccccH
Q 021144 51 VSSPHLVRKVHLDYLDAGANIIITASYQATI 81 (317)
Q Consensus 51 l~~Pe~V~~iH~~Yl~AGAdiI~TnTy~as~ 81 (317)
..+|+.+++. .-.+|++|++.+.-+.+.
T Consensus 19 y~s~~~~~~a---i~aSg~~ivTva~rR~~~ 46 (248)
T cd04728 19 YPSPAIMKEA---IEASGAEIVTVALRRVNI 46 (248)
T ss_pred CCCHHHHHHH---HHHhCCCEEEEEEEeccc
Confidence 4677777766 456899999988877653
No 404
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=40.40 E-value=2.2e+02 Score=27.47 Aligned_cols=74 Identities=15% Similarity=0.155 Sum_probs=43.0
Q ss_pred HHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCC-C----------cccCCCcHHHHHHH---hhc
Q 021144 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDG-I----------NVVSGDSILECASI---ADS 239 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~-~----------~l~~G~~l~~a~~~---~~~ 239 (317)
++..++.|+..+.++ ++.|++.+.+++++.+...++++-+....+ . ..+-|.++.++.+. +..
T Consensus 84 l~~a~~~gi~~i~vd---s~~el~~l~~~a~~~~~~~~v~lRi~~~~~~~~~~~~~~~~~~srfG~~~~~~~~~~~~~~~ 160 (377)
T cd06843 84 LAQALAQGVERIHVE---SELELRRLNAVARRAGRTAPVLLRVNLALPDLPSSTLTMGGQPTPFGIDEADLPDALELLRD 160 (377)
T ss_pred HHHHHHcCCCEEEeC---CHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCCcceecCCCCCCCCcCHHHHHHHHHHHHh
Confidence 333455688777555 788888887777765544577777655321 0 02457776654443 333
Q ss_pred CCCceEEEEcC
Q 021144 240 CEQVVAVGINC 250 (317)
Q Consensus 240 ~~~~~aiGvNC 250 (317)
..++...|+-|
T Consensus 161 ~~~l~~~Glh~ 171 (377)
T cd06843 161 LPNIRLRGFHF 171 (377)
T ss_pred CCCccEEEEEE
Confidence 34566666644
No 405
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=40.38 E-value=1.8e+02 Score=26.46 Aligned_cols=105 Identities=14% Similarity=0.098 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEE-----EeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHH
Q 021144 162 SLETLKEFHRRRVLILANSGADLI-----AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASI 236 (317)
Q Consensus 162 s~~el~~~h~~qi~~l~~~gvD~l-----~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~ 236 (317)
+.+|+.. +++.+...|+|++ .|+. .+..+...+++.+++. ++|+++++.-.++ .+-+..++..
T Consensus 31 ~~ee~~~----~~~~~~~~~aDivE~RlD~l~~-~~~~~~~~~~~~l~~~--~~p~I~T~R~~~~-----~~~l~~a~~~ 98 (229)
T PRK01261 31 DIKEMKE----RFKTKVLSDKNLYEIRFDLFHD-HSIESEPEIISALNEM--DIDYIFTYRGVDA-----RKYYETAIDK 98 (229)
T ss_pred CHHHHHH----HHHHhhcCCCCEEEEEeeccCC-CChHHHHHHHHHHhhc--CCCEEEEEcCCCH-----HHHHHHHHhh
Confidence 5666654 3455666788886 4454 4566666777777764 5899988852111 1112222211
Q ss_pred h----h-----------cCCCceEEEEcCC-ChhhhHHHHHHHHhh-CCCc-EEEEeCCC
Q 021144 237 A----D-----------SCEQVVAVGINCT-SPRFIHGLILSVRKV-TSKP-VIIYPNSG 278 (317)
Q Consensus 237 ~----~-----------~~~~~~aiGvNC~-~p~~~~~~l~~l~~~-~~~p-l~vyPNaG 278 (317)
. + ...+...|.=+.+ +.+.+..+++++.+. .+.. +.++||..
T Consensus 99 ~~d~vDIEl~~~~~~~~~~~~~kvIvS~Htp~~eeL~~~l~~m~~~gaDI~KiAvmp~~~ 158 (229)
T PRK01261 99 MPPAVDLDINLIGKLEFRPRNTMLMVSYHTNNSDNMPAILDIMNEKNPDYVKVACNYNDN 158 (229)
T ss_pred CCCEEEEEcccchhhhhhcCCCeEEEEeCCCCHHHHHHHHHHHHHhCCCEEEEEeCCCCh
Confidence 0 0 0012223333334 236677777777764 2433 78888874
No 406
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=40.34 E-value=3e+02 Score=25.44 Aligned_cols=102 Identities=20% Similarity=0.174 Sum_probs=54.1
Q ss_pred HHHHHHHHHhCCCCEEEeccCCC---------HH--------------HHHHHHHHHHHhCCCccEEEEEEEcCCCcccC
Q 021144 170 HRRRVLILANSGADLIAFETIPN---------KL--------------EAKAYAELLEEEGITIPAWFSFNSKDGINVVS 226 (317)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET~p~---------~~--------------Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~ 226 (317)
..+.++.|.++|||+|=+- +|- ++ +...+++.+++...+.|+++-..++. -..-
T Consensus 28 ~~~~~~~l~~~Gad~iElG-iPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~--i~~~ 104 (258)
T PRK13111 28 SLEIIKALVEAGADIIELG-IPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNP--IFQY 104 (258)
T ss_pred HHHHHHHHHHCCCCEEEEC-CCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccH--Hhhc
Confidence 3345778888999998332 332 22 22333344453334688763332321 1112
Q ss_pred CCcHHHHHHHhhcCCCceEEEEcCCChhhhHHHHHHHHhhCCCc-EEEEeCC
Q 021144 227 GDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKP-VIIYPNS 277 (317)
Q Consensus 227 G~~l~~a~~~~~~~~~~~aiGvNC~~p~~~~~~l~~l~~~~~~p-l~vyPNa 277 (317)
| ++..++.+.+ .+++++-|+=-.++....+++.+++..=.+ ++|-||.
T Consensus 105 G--~e~f~~~~~~-aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t 153 (258)
T PRK13111 105 G--VERFAADAAE-AGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTT 153 (258)
T ss_pred C--HHHHHHHHHH-cCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 3 4555555554 477777776555666666666665542223 2366665
No 407
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=40.32 E-value=3.1e+02 Score=25.46 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=29.6
Q ss_pred ChHHHHHHHHHHHHhhcccccc-ccccccHHHHHhCCCCHHHHHHHHHHHHH
Q 021144 53 SPHLVRKVHLDYLDAGANIIIT-ASYQATIQGFEAKGFSTEEAEALLRRSVE 103 (317)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~T-nTy~as~~~l~~~g~~~~~~~~l~~~av~ 103 (317)
+.+.+++.-+.++++|+|-|.. -|.+=. .-++.+|-+++++.+++
T Consensus 18 D~~~~~~li~~l~~~Gv~Gl~~~GstGE~------~~Lt~eEr~~l~~~~~~ 63 (279)
T cd00953 18 DKEKFKKHCENLISKGIDYVFVAGTTGLG------PSLSFQEKLELLKAYSD 63 (279)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcccCCCc------ccCCHHHHHHHHHHHHH
Confidence 5677888888889999996654 333311 13466667777766654
No 408
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=40.09 E-value=19 Score=34.56 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=20.5
Q ss_pred CCChHHHHHHHHHHHHhhccccccc
Q 021144 51 VSSPHLVRKVHLDYLDAGANIIITA 75 (317)
Q Consensus 51 l~~Pe~V~~iH~~Yl~AGAdiI~Tn 75 (317)
++....|.+.+..+-+||||+|.|.
T Consensus 291 ~d~~~~~~Esl~~~kRAGAd~IiTY 315 (324)
T PF00490_consen 291 IDEKRVVLESLLSIKRAGADIIITY 315 (324)
T ss_dssp S-HHHHHHHHHHHHHHHT-SEEEET
T ss_pred cchhhHHHHHHHHHHHcCCCEEEee
Confidence 5667799999999999999999874
No 409
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=39.98 E-value=2e+02 Score=27.13 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=20.1
Q ss_pred ccCCCcHHHHHHHhhcCCCceEEEEcCCC
Q 021144 224 VVSGDSILECASIADSCEQVVAVGINCTS 252 (317)
Q Consensus 224 l~~G~~l~~a~~~~~~~~~~~aiGvNC~~ 252 (317)
|-+|.+++.+.+.++ .+...|.+-+++
T Consensus 84 LDHg~~~e~i~~ai~--~GftSVM~DgS~ 110 (285)
T PRK07709 84 LDHGSSFEKCKEAID--AGFTSVMIDASH 110 (285)
T ss_pred CCCCCCHHHHHHHHH--cCCCEEEEeCCC
Confidence 446778887777776 367888888885
No 410
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=39.98 E-value=3.1e+02 Score=25.47 Aligned_cols=69 Identities=10% Similarity=0.108 Sum_probs=40.8
Q ss_pred HHHHHHHHhC--CCCEEEecc------------CCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHH
Q 021144 171 RRRVLILANS--GADLIAFET------------IPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASI 236 (317)
Q Consensus 171 ~~qi~~l~~~--gvD~l~~ET------------~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~ 236 (317)
.+.++.+.++ ++|.|-+-- ..+.+.+..+++.+++.. ++|+++-++. +-+...+.++.
T Consensus 106 ~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~-~~pv~vKi~~-------~~~~~~~~a~~ 177 (300)
T TIGR01037 106 AEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT-DVPVFAKLSP-------NVTDITEIAKA 177 (300)
T ss_pred HHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEECCC-------ChhhHHHHHHH
Confidence 3455556554 388886641 234566777888888753 5898877641 11234455555
Q ss_pred hhcCCCceEEEE
Q 021144 237 ADSCEQVVAVGI 248 (317)
Q Consensus 237 ~~~~~~~~aiGv 248 (317)
+.+ .++++|-+
T Consensus 178 l~~-~G~d~i~v 188 (300)
T TIGR01037 178 AEE-AGADGLTL 188 (300)
T ss_pred HHH-cCCCEEEE
Confidence 554 47777654
No 411
>PRK11579 putative oxidoreductase; Provisional
Probab=39.93 E-value=97 Score=29.52 Aligned_cols=47 Identities=13% Similarity=0.071 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhCCCCEEEec--cCCCHHHHHHHHHHHHHhCCCccEEEEEEE
Q 021144 169 FHRRRVLILANSGADLIAFE--TIPNKLEAKAYAELLEEEGITIPAWFSFNS 218 (317)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~E--T~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~ 218 (317)
.|.+++...+++|..+| +| --.+++|++.+++++++.+ +++.+.|..
T Consensus 76 ~H~~~~~~al~aGkhVl-~EKPla~t~~ea~~l~~~a~~~g--~~l~v~~~~ 124 (346)
T PRK11579 76 THFPLAKAALEAGKHVV-VDKPFTVTLSQARELDALAKSAG--RVLSVFHNR 124 (346)
T ss_pred HHHHHHHHHHHCCCeEE-EeCCCCCCHHHHHHHHHHHHHhC--CEEEEEeec
Confidence 58888888888998876 47 3347899999999888765 666666643
No 412
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=39.84 E-value=1.9e+02 Score=26.55 Aligned_cols=98 Identities=16% Similarity=0.059 Sum_probs=61.2
Q ss_pred HHHHHHhCCCCEEEeccCC---------CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhc--CC
Q 021144 173 RVLILANSGADLIAFETIP---------NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS--CE 241 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p---------~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~--~~ 241 (317)
-++.+.++||-.|.+|-.- +.+|+..=++++++.-.+..++|--.. +..+..+..++++++.+.. ..
T Consensus 90 tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ART--Da~~~~~~~~deaI~R~~aY~eA 167 (238)
T PF13714_consen 90 TVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIART--DAFLRAEEGLDEAIERAKAYAEA 167 (238)
T ss_dssp HHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEE--CHHCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEec--cccccCCCCHHHHHHHHHHHHHc
Confidence 4777889999999999872 577776666665553222334433322 3332246678888877642 25
Q ss_pred CceEEEEcCC-ChhhhHHHHHHHHhhCCCcEEEEeC
Q 021144 242 QVVAVGINCT-SPRFIHGLILSVRKVTSKPVIIYPN 276 (317)
Q Consensus 242 ~~~aiGvNC~-~p~~~~~~l~~l~~~~~~pl~vyPN 276 (317)
|+++|-+-+. ..+.+..+.+.+ +.|+.+.+.
T Consensus 168 GAD~ifi~~~~~~~~i~~~~~~~----~~Pl~v~~~ 199 (238)
T PF13714_consen 168 GADMIFIPGLQSEEEIERIVKAV----DGPLNVNPG 199 (238)
T ss_dssp T-SEEEETTSSSHHHHHHHHHHH----SSEEEEETT
T ss_pred CCCEEEeCCCCCHHHHHHHHHhc----CCCEEEEcC
Confidence 8899988886 455555555554 589999885
No 413
>PTZ00300 pyruvate kinase; Provisional
Probab=39.81 E-value=3.9e+02 Score=27.03 Aligned_cols=76 Identities=17% Similarity=0.118 Sum_probs=47.7
Q ss_pred CeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccE
Q 021144 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPA 212 (317)
Q Consensus 133 ~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv 212 (317)
.+...|.+++.-..--||....-. .++..+..+ ++..++.|+|+|++==+.+.++++.+.+++.+.+.+.++
T Consensus 120 ~v~~gG~l~~~kgvnlp~~~~~l~---~ltekD~~d-----I~~ald~gvd~I~~SfVrsaeDv~~vr~~l~~~~~~~~I 191 (454)
T PTZ00300 120 TVTNAHTISDRRGVNLPGCDVDLP---AVSAKDCAD-----LQFGVEQGVDMIFASFIRSAEQVGEVRKALGAKGGDIMI 191 (454)
T ss_pred EEecCcEecCCCccccCCCccCCC---CCChhhHHH-----HHHHHHCCCCEEEECCCCCHHHHHHHHHHHHhcCCCceE
Confidence 345567777743322233332211 145444443 455677999999999999999999999999776544455
Q ss_pred EEEE
Q 021144 213 WFSF 216 (317)
Q Consensus 213 ~iSf 216 (317)
+.-+
T Consensus 192 iaKI 195 (454)
T PTZ00300 192 ICKI 195 (454)
T ss_pred EEEE
Confidence 5444
No 414
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=39.73 E-value=3e+02 Score=25.15 Aligned_cols=94 Identities=17% Similarity=0.152 Sum_probs=49.0
Q ss_pred HHHHHHhCCCCEEEeccC--C-----CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccC--CCcHHHHHHHhhcCCCc
Q 021144 173 RVLILANSGADLIAFETI--P-----NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVS--GDSILECASIADSCEQV 243 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~--p-----~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~--G~~l~~a~~~~~~~~~~ 243 (317)
.++.+++.|+|.+-+.-- + .+.+++.+.+++++.+ .|+++-+. .+..++.. -..+..+++...+ .++
T Consensus 95 ~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g--~~liv~~~-~~Gvh~~~~~~~~~~~~~~~a~~-~GA 170 (258)
T TIGR01949 95 TVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWG--VPLLAMMY-PRGPHIDDRDPELVAHAARLGAE-LGA 170 (258)
T ss_pred eHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcC--CCEEEEEe-ccCcccccccHHHHHHHHHHHHH-HCC
Confidence 466677889987655322 1 2234445555555544 88887443 22223321 1123333333333 588
Q ss_pred eEEEEcCCChhhhHHHHHHHHhhCCCcEEE
Q 021144 244 VAVGINCTSPRFIHGLILSVRKVTSKPVII 273 (317)
Q Consensus 244 ~aiGvNC~~p~~~~~~l~~l~~~~~~pl~v 273 (317)
+.|++.-.. -...++++.+..+.|+++
T Consensus 171 Dyikt~~~~---~~~~l~~~~~~~~iPVva 197 (258)
T TIGR01949 171 DIVKTPYTG---DIDSFRDVVKGCPAPVVV 197 (258)
T ss_pred CEEeccCCC---CHHHHHHHHHhCCCcEEE
Confidence 999986432 124455555555688755
No 415
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=39.49 E-value=2.5e+02 Score=25.55 Aligned_cols=92 Identities=18% Similarity=0.018 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcC
Q 021144 161 VSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSC 240 (317)
Q Consensus 161 ~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~ 240 (317)
++.+++.. .++...+. +|+|=+-|.--..|-..+++.+|+..+++++++-+-.-|.|. ++ + +.+..
T Consensus 13 ~~l~~Ai~----~a~~v~~~-~diiEvGTpLik~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~------~e-~-~ma~~- 78 (217)
T COG0269 13 LDLEEAIE----IAEEVADY-VDIIEVGTPLIKAEGMRAVRALRELFPDKIIVADLKTADAGA------IE-A-RMAFE- 78 (217)
T ss_pred cCHHHHHH----HHHHhhhc-ceEEEeCcHHHHHhhHHHHHHHHHHCCCCeEEeeeeecchhH------HH-H-HHHHH-
Confidence 35555444 23344444 899988898888898899999999878899987775544433 22 1 22222
Q ss_pred CCceEEEEcCC-ChhhhHHHHHHHHhh
Q 021144 241 EQVVAVGINCT-SPRFIHGLILSVRKV 266 (317)
Q Consensus 241 ~~~~aiGvNC~-~p~~~~~~l~~l~~~ 266 (317)
.+.+.+-|-|+ +...+.++++..++.
T Consensus 79 aGAd~~tV~g~A~~~TI~~~i~~A~~~ 105 (217)
T COG0269 79 AGADWVTVLGAADDATIKKAIKVAKEY 105 (217)
T ss_pred cCCCEEEEEecCCHHHHHHHHHHHHHc
Confidence 47788888887 558888888887775
No 416
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=39.46 E-value=1.9e+02 Score=22.76 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=27.4
Q ss_pred CCCcHHHHHHHhhcCCCceEEEEcCCC---hhhhHHHHHHHHhhC
Q 021144 226 SGDSILECASIADSCEQVVAVGINCTS---PRFIHGLILSVRKVT 267 (317)
Q Consensus 226 ~G~~l~~a~~~~~~~~~~~aiGvNC~~---p~~~~~~l~~l~~~~ 267 (317)
...+.++.++.+.+ ..++.||+.|+. ...+..+++.+++..
T Consensus 35 ~~~~~~~l~~~~~~-~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~ 78 (119)
T cd02067 35 VDVPPEEIVEAAKE-EDADAIGLSGLLTTHMTLMKEVIEELKEAG 78 (119)
T ss_pred CCCCHHHHHHHHHH-cCCCEEEEeccccccHHHHHHHHHHHHHcC
Confidence 34567777777765 477888888862 355666667776653
No 417
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=39.14 E-value=3.3e+02 Score=25.49 Aligned_cols=68 Identities=18% Similarity=0.213 Sum_probs=41.6
Q ss_pred HHHHHHHHHhCCCCEEEec-cCC--------------CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHH
Q 021144 170 HRRRVLILANSGADLIAFE-TIP--------------NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECA 234 (317)
Q Consensus 170 h~~qi~~l~~~gvD~l~~E-T~p--------------~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~ 234 (317)
|.+.++.+.+.|+|.|=+- ..| +.+.+..+++.+++.- ++|+++-++. +-+.+.+.+
T Consensus 115 ~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~Pv~vKl~~-------~~~~~~~~a 186 (299)
T cd02940 115 WTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV-KIPVIAKLTP-------NITDIREIA 186 (299)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc-CCCeEEECCC-------CchhHHHHH
Confidence 4445556666789988553 122 3455777888887653 5899987742 112456677
Q ss_pred HHhhcCCCceEE
Q 021144 235 SIADSCEQVVAV 246 (317)
Q Consensus 235 ~~~~~~~~~~ai 246 (317)
+.+.+ .++++|
T Consensus 187 ~~~~~-~Gadgi 197 (299)
T cd02940 187 RAAKE-GGADGV 197 (299)
T ss_pred HHHHH-cCCCEE
Confidence 76654 466654
No 418
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=38.99 E-value=1.4e+02 Score=28.78 Aligned_cols=122 Identities=14% Similarity=0.117 Sum_probs=63.8
Q ss_pred HHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCc--eEEEEcCC
Q 021144 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQV--VAVGINCT 251 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~--~aiGvNC~ 251 (317)
++.|.+-|||++=+=+.- +.. .-.++.+.+++ +|+++|- |. .+=..+..+++.+...... ..+.+-|+
T Consensus 102 vd~l~~~~v~~~KIaS~~-~~n-~pLL~~~A~~g--kPvilSt-----Gm-atl~Ei~~Av~~i~~~G~~~~~i~llhC~ 171 (329)
T TIGR03569 102 ADFLEDLGVPRFKIPSGE-ITN-APLLKKIARFG--KPVILST-----GM-ATLEEIEAAVGVLRDAGTPDSNITLLHCT 171 (329)
T ss_pred HHHHHhcCCCEEEECccc-ccC-HHHHHHHHhcC--CcEEEEC-----CC-CCHHHHHHHHHHHHHcCCCcCcEEEEEEC
Confidence 444555566666444321 111 12334444444 8999876 21 1112345566666543223 36777787
Q ss_pred C--h----hhhHHHHHHHHhhCCCcEEEEeCC--CCc----------------cccccccccc---cCCCChhhHHHHHH
Q 021144 252 S--P----RFIHGLILSVRKVTSKPVIIYPNS--GET----------------YNAELKKWVV---SFSLHFFPLELILN 304 (317)
Q Consensus 252 ~--p----~~~~~~l~~l~~~~~~pl~vyPNa--G~~----------------~d~~~~~w~~---~~~~~~~~~~~~~~ 304 (317)
+ | ..=+..+..|++..+.|++ |+.= |.. ++. .+.|.. ...++|++|.+.+.
T Consensus 172 s~YP~~~~~~nL~~I~~Lk~~f~~pVG-~SdHt~G~~~~~aAvalGA~iIEkH~tl-dk~~~G~D~~~Sl~p~el~~lv~ 249 (329)
T TIGR03569 172 TEYPAPFEDVNLNAMDTLKEAFDLPVG-YSDHTLGIEAPIAAVALGATVIEKHFTL-DKNLPGPDHKASLEPDELKEMVQ 249 (329)
T ss_pred CCCCCCcccCCHHHHHHHHHHhCCCEE-ECCCCccHHHHHHHHHcCCCEEEeCCCh-hhcCCCCChhhcCCHHHHHHHHH
Confidence 4 2 2235677788887777877 4431 100 111 133421 23578999998877
Q ss_pred HHH
Q 021144 305 PFA 307 (317)
Q Consensus 305 ~w~ 307 (317)
.-.
T Consensus 250 ~ir 252 (329)
T TIGR03569 250 GIR 252 (329)
T ss_pred HHH
Confidence 643
No 419
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=38.65 E-value=3e+02 Score=24.91 Aligned_cols=72 Identities=14% Similarity=0.126 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEeccCCC--HHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHh
Q 021144 162 SLETLKEFHRRRVLILANSGADLIAFETIPN--KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA 237 (317)
Q Consensus 162 s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~--~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~ 237 (317)
..+.+.+..++.++...+.||. |.+|+++. +.....+.+++++.+ .| ++.+.++-......|.++.+.+...
T Consensus 127 ~~~~~~~~l~~l~~~a~~~gv~-l~lE~~~~~~~~~~~~~~~l~~~v~--~~-~~~~~~D~~h~~~~~~~~~~~l~~~ 200 (284)
T PRK13210 127 TRQRFIEGLAWAVEQAAAAQVM-LAVEIMDTPFMNSISKWKKWDKEID--SP-WLTVYPDVGNLSAWGNDVWSELKLG 200 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhCCE-EEEEecCccccCCHHHHHHHHHHcC--CC-ceeEEecCChhhhcCCCHHHHHHHh
Confidence 4466667777777777788995 45698643 222223334455543 34 3455554332223466776666543
No 420
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=38.65 E-value=5e+02 Score=28.09 Aligned_cols=57 Identities=14% Similarity=0.021 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEe-----ccCCCHHHHHHHHHHHHHhC---CCccEEEEEEEc
Q 021144 163 LETLKEFHRRRVLILANSGADLIAF-----ETIPNKLEAKAYAELLEEEG---ITIPAWFSFNSK 219 (317)
Q Consensus 163 ~~el~~~h~~qi~~l~~~gvD~l~~-----ET~p~~~Ea~a~~~~~~~~~---~~~pv~iSf~~~ 219 (317)
.+++...|++-++.|.++||+.|=| =+.++-.+..++.++.+... .+.++.++..+.
T Consensus 179 l~dl~~~y~~~l~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg 243 (758)
T PRK05222 179 LDDLLPVYAELLAELAAAGAEWVQIDEPALVLDLPQEWLEAFKRAYEALAAAKPRPKLLLATYFG 243 (758)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEeeCchhhcCCCHHHHHHHHHHHHHHhcCCCCCCEEEEeecc
Confidence 4568889999999999999998733 23333345555556555432 124677776554
No 421
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=38.60 E-value=1.6e+02 Score=28.11 Aligned_cols=75 Identities=17% Similarity=0.100 Sum_probs=41.6
Q ss_pred HHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhc-CCCceEEEEcCC----C---hhh---hHHHHHHHHhh
Q 021144 198 AYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS-CEQVVAVGINCT----S---PRF---IHGLILSVRKV 266 (317)
Q Consensus 198 a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~-~~~~~aiGvNC~----~---p~~---~~~~l~~l~~~ 266 (317)
.-.+.+++..++.|+++++-+... .|.+.+++.+.++. ......+++||. . +.. +...|+.+.+.
T Consensus 101 ~~~~~vr~~~~~~p~~~Nl~~~~~----~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~ 176 (326)
T cd02811 101 ESFTVVREAPPNGPLIANLGAVQL----NGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKA 176 (326)
T ss_pred hHHHHHHHhCCCceEEeecCcccc----CCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHh
Confidence 445556666556888887755321 14455544444331 124456777772 1 112 23556666666
Q ss_pred CCCcEEEEeC
Q 021144 267 TSKPVIIYPN 276 (317)
Q Consensus 267 ~~~pl~vyPN 276 (317)
.+.|+++.-+
T Consensus 177 ~~vPVivK~~ 186 (326)
T cd02811 177 LSVPVIVKEV 186 (326)
T ss_pred cCCCEEEEec
Confidence 6888888754
No 422
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=38.58 E-value=3.1e+02 Score=25.07 Aligned_cols=91 Identities=14% Similarity=0.154 Sum_probs=45.2
Q ss_pred HHHHHHHhCCCCEEEeccCCC---------HHHHH---HHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhc
Q 021144 172 RRVLILANSGADLIAFETIPN---------KLEAK---AYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS 239 (317)
Q Consensus 172 ~qi~~l~~~gvD~l~~ET~p~---------~~Ea~---a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~ 239 (317)
++++.+.+.|+|+|=+-.-++ .+|.+ .+++.+++.. +.| +|+ |-...+-+-..++.
T Consensus 28 ~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~-~~p--iSI---------DT~~~~v~~aaL~~ 95 (258)
T cd00423 28 EHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP-DVP--ISV---------DTFNAEVAEAALKA 95 (258)
T ss_pred HHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC-CCe--EEE---------eCCcHHHHHHHHHh
Confidence 367777889999996654443 34444 4555555432 344 455 22222222223332
Q ss_pred CCCceEEEEcCCC-hhhhHHHHHHHHhhCCCcEEEEeCCCC
Q 021144 240 CEQVVAVGINCTS-PRFIHGLILSVRKVTSKPVIIYPNSGE 279 (317)
Q Consensus 240 ~~~~~aiGvNC~~-p~~~~~~l~~l~~~~~~pl~vyPNaG~ 279 (317)
. ....-.++... .+.+.++ +++ .+.|+++.++.|.
T Consensus 96 g-~~iINdis~~~~~~~~~~l---~~~-~~~~vV~m~~~~~ 131 (258)
T cd00423 96 G-ADIINDVSGGRGDPEMAPL---AAE-YGAPVVLMHMDGT 131 (258)
T ss_pred C-CCEEEeCCCCCCChHHHHH---HHH-cCCCEEEECcCCC
Confidence 2 22322333321 1233333 333 4679999998764
No 423
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=38.52 E-value=3.5e+02 Score=25.56 Aligned_cols=106 Identities=21% Similarity=0.197 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEec-cCC---------------CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCccc
Q 021144 162 SLETLKEFHRRRVLILANSGADLIAFE-TIP---------------NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVV 225 (317)
Q Consensus 162 s~~el~~~h~~qi~~l~~~gvD~l~~E-T~p---------------~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~ 225 (317)
+.+++.+ .++.+.++|+|.|=+- -.| +.+-+..+++.+++.- +.|+.+-+...- ..
T Consensus 73 ~~~~~~~----aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~-~~pv~vKir~g~---~~ 144 (319)
T TIGR00737 73 DPDTMAE----AAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAV-DIPVTVKIRIGW---DD 144 (319)
T ss_pred CHHHHHH----HHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhc-CCCEEEEEEccc---CC
Confidence 4445444 3444566788888332 122 3344556777777643 588877765421 11
Q ss_pred CCCcHHHHHHHhhcCCCceEEEEcCCC------hhhhHHHHHHHHhhCCCcEEEEeCCC
Q 021144 226 SGDSILECASIADSCEQVVAVGINCTS------PRFIHGLILSVRKVTSKPVIIYPNSG 278 (317)
Q Consensus 226 ~G~~l~~a~~~~~~~~~~~aiGvNC~~------p~~~~~~l~~l~~~~~~pl~vyPNaG 278 (317)
++.++.+.++.+.+ .++++|-+..-. .......++.+++..+.|++ .|+|
T Consensus 145 ~~~~~~~~a~~l~~-~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi--~nGg 200 (319)
T TIGR00737 145 AHINAVEAARIAED-AGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVI--GNGD 200 (319)
T ss_pred CcchHHHHHHHHHH-hCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEE--EeCC
Confidence 33445667776765 477777665421 12235677788887777755 4666
No 424
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=38.00 E-value=3.4e+02 Score=29.41 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEec-----cCCCHHHHHHHHHHHHHhC---CCccEEEEEEEcC
Q 021144 163 LETLKEFHRRRVLILANSGADLIAFE-----TIPNKLEAKAYAELLEEEG---ITIPAWFSFNSKD 220 (317)
Q Consensus 163 ~~el~~~h~~qi~~l~~~gvD~l~~E-----T~p~~~Ea~a~~~~~~~~~---~~~pv~iSf~~~~ 220 (317)
.+++...|.+.++.|.++||+.|=+. |=....+..++.++.+... .+.++++...|.+
T Consensus 181 l~~L~~~y~~~l~~L~~~Gv~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~TyFg~ 246 (766)
T PLN02475 181 LDKILPVYKEVIAELKAAGASWIQFDEPALVMDLESHKLQAFKTAYAELESTLSGLNVLVETYFAD 246 (766)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCchhhcCCCHHHHHHHHHHHHHHHhccCCCeEEEEccCCC
Confidence 56788899999999999999987332 1112345666666655431 2457888777654
No 425
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=37.37 E-value=3.4e+02 Score=25.11 Aligned_cols=99 Identities=17% Similarity=0.152 Sum_probs=54.7
Q ss_pred HHHHHhCCCCEEEeccCC---------------CHHHHHHHHHHHHHhCCCccEEEEE-EEcCCCcccCCCcHHHHHHHh
Q 021144 174 VLILANSGADLIAFETIP---------------NKLEAKAYAELLEEEGITIPAWFSF-NSKDGINVVSGDSILECASIA 237 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET~p---------------~~~Ea~a~~~~~~~~~~~~pv~iSf-~~~~~~~l~~G~~l~~a~~~~ 237 (317)
++.+.+.|+|.+-+-+-. .++.++.+++.+++.+ ..+.++. .+.+..+. +-.-+.+.++.+
T Consensus 84 ~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G--~~v~~~~~~~~d~~~~-~~~~~~~~~~~~ 160 (273)
T cd07941 84 LQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHG--REVIFDAEHFFDGYKA-NPEYALATLKAA 160 (273)
T ss_pred HHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC--CeEEEeEEeccccCCC-CHHHHHHHHHHH
Confidence 555677899988764322 2334455666677766 5554432 22121111 112223344444
Q ss_pred hcCCCceEEEEcC----CChhhhHHHHHHHHhhCC-CcEEEEeC
Q 021144 238 DSCEQVVAVGINC----TSPRFIHGLILSVRKVTS-KPVIIYPN 276 (317)
Q Consensus 238 ~~~~~~~aiGvNC----~~p~~~~~~l~~l~~~~~-~pl~vyPN 276 (317)
.+ .+++.|.+-= ..|..+..+++.+++..+ .||.+...
T Consensus 161 ~~-~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~H 203 (273)
T cd07941 161 AE-AGADWLVLCDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAH 203 (273)
T ss_pred Hh-CCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCCeeEEEec
Confidence 43 3566554432 248999999999988754 77776554
No 426
>PRK09389 (R)-citramalate synthase; Provisional
Probab=37.37 E-value=3.2e+02 Score=27.86 Aligned_cols=97 Identities=13% Similarity=0.098 Sum_probs=53.8
Q ss_pred HHHHHhCCCCEEEec-cCCCH--------------HHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhh
Q 021144 174 VLILANSGADLIAFE-TIPNK--------------LEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (317)
Q Consensus 174 i~~l~~~gvD~l~~E-T~p~~--------------~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~ 238 (317)
++...++|+|.+-+- ..+++ +.+..+++.+++.+ .. +.|+..+..+. +=.-+.++++.+.
T Consensus 79 i~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g--~~--v~~~~ed~~r~-~~~~l~~~~~~~~ 153 (488)
T PRK09389 79 IDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHG--LI--VELSGEDASRA-DLDFLKELYKAGI 153 (488)
T ss_pred HHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC--CE--EEEEEeeCCCC-CHHHHHHHHHHHH
Confidence 445667888876433 33323 22333445555544 33 45555554332 1122334444444
Q ss_pred cCCCceEEEEcCC----ChhhhHHHHHHHHhhCCCcEEEEeC
Q 021144 239 SCEQVVAVGINCT----SPRFIHGLILSVRKVTSKPVIIYPN 276 (317)
Q Consensus 239 ~~~~~~aiGvNC~----~p~~~~~~l~~l~~~~~~pl~vyPN 276 (317)
+ .+++.|.+-=| .|..+..+++.+++..+.||.+.+.
T Consensus 154 ~-~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~~~v~l~~H~H 194 (488)
T PRK09389 154 E-AGADRICFCDTVGILTPEKTYELFKRLSELVKGPVSIHCH 194 (488)
T ss_pred h-CCCCEEEEecCCCCcCHHHHHHHHHHHHhhcCCeEEEEec
Confidence 3 46666544323 4899999999998877788887664
No 427
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=37.34 E-value=2.9e+02 Score=25.34 Aligned_cols=81 Identities=16% Similarity=0.080 Sum_probs=53.2
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHh---hcCCCceEEEEcCCCh-----hh
Q 021144 184 LIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA---DSCEQVVAVGINCTSP-----RF 255 (317)
Q Consensus 184 ~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~---~~~~~~~aiGvNC~~p-----~~ 255 (317)
+-+++|+-++.-|+++=+...+.+..+.|++.+.+..+. ..+|.+++++...+ ....++-..|+-|..| ..
T Consensus 94 ~~~ihSlDr~klA~~l~kra~~~~~~l~v~iQVNi~~E~-sK~G~~~~e~~~~~~~~~~~~~L~l~GLM~ipp~~~d~~~ 172 (228)
T COG0325 94 FDWIHSLDRLKLAKELNKRALELPKPLNVLIQVNISGEE-SKSGVPPEELDELAQEVQELPNLELRGLMTIPPLTDDPEE 172 (228)
T ss_pred cceeeecCHHHHHHHHHHHHHhCCCCceEEEEEecCCcc-ccCCCCHHHHHHHHHHHHhCCCCeEeEEEeeCCCCCCHHH
Confidence 345688888888777766444433246788888774432 34788888766554 4467889999999753 34
Q ss_pred hHHHHHHHHh
Q 021144 256 IHGLILSVRK 265 (317)
Q Consensus 256 ~~~~l~~l~~ 265 (317)
....++.+++
T Consensus 173 ~~~~F~~l~~ 182 (228)
T COG0325 173 IFAVFRKLRK 182 (228)
T ss_pred HHHHHHHHHH
Confidence 4555555544
No 428
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=37.30 E-value=23 Score=33.95 Aligned_cols=25 Identities=28% Similarity=0.305 Sum_probs=22.0
Q ss_pred CCChHHHHHHHHHHHHhhccccccc
Q 021144 51 VSSPHLVRKVHLDYLDAGANIIITA 75 (317)
Q Consensus 51 l~~Pe~V~~iH~~Yl~AGAdiI~Tn 75 (317)
++....|.+.+..+-+||||+|.|.
T Consensus 289 ~D~~~~~~Esl~~~kRAGAd~IiTY 313 (323)
T PRK09283 289 IDEERVVLESLLSIKRAGADGILTY 313 (323)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEec
Confidence 5666789999999999999999874
No 429
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=37.27 E-value=2e+02 Score=27.33 Aligned_cols=71 Identities=14% Similarity=0.084 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCChhhhHHHHHHHHhhCCCc
Q 021144 191 PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKP 270 (317)
Q Consensus 191 p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~p~~~~~~l~~l~~~~~~p 270 (317)
||...-...-.+++..| ..++.++ ..+..+.-|+++.|.+..+.. . +++|.+-+... ..++.+.+..+.|
T Consensus 48 pSTRTR~SFE~A~~~LG-g~~i~l~---~~~ss~~kgEsl~Dt~~vls~-y-~D~iviR~~~~----~~~~~~a~~~~vP 117 (302)
T PRK14805 48 PSLRTRVSFDIGINKLG-GHCLYLD---QQNGALGKRESVADFAANLSC-W-ADAIVARVFSH----STIEQLAEHGSVP 117 (302)
T ss_pred CCchHHHHHHHHHHHcC-CcEEECC---CCcCcCCCCcCHHHHHHHHHH-h-CCEEEEeCCCh----hHHHHHHHhCCCC
Confidence 66666444445566665 2344432 123345678888888887764 2 67777776432 2344455555666
Q ss_pred E
Q 021144 271 V 271 (317)
Q Consensus 271 l 271 (317)
+
T Consensus 118 V 118 (302)
T PRK14805 118 V 118 (302)
T ss_pred E
Confidence 5
No 430
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=37.15 E-value=1.9e+02 Score=26.67 Aligned_cols=57 Identities=11% Similarity=0.042 Sum_probs=43.3
Q ss_pred HHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhh
Q 021144 170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (317)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~ 238 (317)
|.+-++.++..++|.|++.-+-+.+++.++++++.. + ..+|.|+ +..+..+++..+.
T Consensus 138 ~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa~t-G--h~v~tTl---------Ha~~~~~ai~Rl~ 194 (264)
T cd01129 138 FARGLRAILRQDPDIIMVGEIRDAETAEIAVQAALT-G--HLVLSTL---------HTNDAPGAITRLL 194 (264)
T ss_pred HHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHHHc-C--CcEEEEe---------ccCCHHHHHHHHH
Confidence 555677777789999999999999999999988773 4 5688776 4555666666654
No 431
>PRK14057 epimerase; Provisional
Probab=37.13 E-value=3.5e+02 Score=25.19 Aligned_cols=98 Identities=14% Similarity=0.096 Sum_probs=55.3
Q ss_pred HHHHHHhCCCCEEEe--ccCCCHHHHHHHHHHHHHhCCC-----ccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceE
Q 021144 173 RVLILANSGADLIAF--ETIPNKLEAKAYAELLEEEGIT-----IPAWFSFNSKDGINVVSGDSILECASIADSCEQVVA 245 (317)
Q Consensus 173 qi~~l~~~gvD~l~~--ET~p~~~Ea~a~~~~~~~~~~~-----~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~a 245 (317)
.++.|.++|+|.|.| |+..++ ..+++.+|+.+.. .++-+.+.+ ..+|+++.....+.....+..
T Consensus 90 ~i~~~~~aGad~It~H~Ea~~~~---~~~l~~Ir~~G~k~~~~~~~~kaGlAl------nP~Tp~e~i~~~l~~vD~VLv 160 (254)
T PRK14057 90 AAQACVKAGAHCITLQAEGDIHL---HHTLSWLGQQTVPVIGGEMPVIRGISL------CPATPLDVIIPILSDVEVIQL 160 (254)
T ss_pred HHHHHHHhCCCEEEEeeccccCH---HHHHHHHHHcCCCcccccccceeEEEE------CCCCCHHHHHHHHHhCCEEEE
Confidence 366788899999965 765554 4455667776521 123334443 357788877766654333444
Q ss_pred EEEcCC--ChhhhHHHHHHHHhh------CCCcEEEEeCCCC
Q 021144 246 VGINCT--SPRFIHGLILSVRKV------TSKPVIIYPNSGE 279 (317)
Q Consensus 246 iGvNC~--~p~~~~~~l~~l~~~------~~~pl~vyPNaG~ 279 (317)
..||=. +-..+...++++++. .+..+.+.-++|-
T Consensus 161 MtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI 202 (254)
T PRK14057 161 LAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSL 202 (254)
T ss_pred EEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCC
Confidence 444442 224555555554432 1223667778874
No 432
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=36.98 E-value=81 Score=31.49 Aligned_cols=75 Identities=16% Similarity=0.207 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhCCCCEEEeccCC---CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCc
Q 021144 167 KEFHRRRVLILANSGADLIAFETIP---NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQV 243 (317)
Q Consensus 167 ~~~h~~qi~~l~~~gvD~l~~ET~p---~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~ 243 (317)
.++|.+.++.|++.|||-|.|--|. +..++-.++.++|+.. ++|+-+. + +--+|.+....++.+.. |+
T Consensus 155 ~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~-~~pv~lH--t----H~TsG~a~m~ylkAvEA--Gv 225 (472)
T COG5016 155 LEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKEL-PVPVELH--T----HATSGMAEMTYLKAVEA--GV 225 (472)
T ss_pred HHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhc-CCeeEEe--c----ccccchHHHHHHHHHHh--Cc
Confidence 4578889999999999999998766 5677778888888753 3555433 2 22267666655555542 55
Q ss_pred eEEEEcC
Q 021144 244 VAVGINC 250 (317)
Q Consensus 244 ~aiGvNC 250 (317)
+.|-.-|
T Consensus 226 D~iDTAi 232 (472)
T COG5016 226 DGIDTAI 232 (472)
T ss_pred chhhhhh
Confidence 6555544
No 433
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=36.79 E-value=2.3e+02 Score=27.94 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhccccccccccccHH
Q 021144 55 HLVRKVHLDYLDAGANIIITASYQATIQ 82 (317)
Q Consensus 55 e~V~~iH~~Yl~AGAdiI~TnTy~as~~ 82 (317)
+.+.++++-|.+-.|..++.|-...+..
T Consensus 179 ~~~~~l~~~f~~~d~~l~EINPl~~~~~ 206 (392)
T PRK14046 179 KTIMGCYRAFRDLDATMLEINPLVVTKD 206 (392)
T ss_pred HHHHHHHHHHHhcCcEEEEEEcceEcCC
Confidence 5788899999999999999998766543
No 434
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=36.66 E-value=1.9e+02 Score=29.53 Aligned_cols=115 Identities=14% Similarity=0.025 Sum_probs=61.6
Q ss_pred CeEEEEeeCC-CcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEE-----Eec-cCCCHHH-HHHHHHHHH
Q 021144 133 PVLVAASVGS-YGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLI-----AFE-TIPNKLE-AKAYAELLE 204 (317)
Q Consensus 133 ~~~VagsiGP-~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l-----~~E-T~p~~~E-a~a~~~~~~ 204 (317)
++++..-|=| .| ++.+++.+ ++..+..+|+|+| +.. .+.-++| ++++.++++
T Consensus 167 RPLigtiiKP~~G----------------Lsp~~~A~----~~y~~~~GGvD~IKDDE~l~dq~~~p~~eRv~~~~~a~~ 226 (475)
T CHL00040 167 RPLLGCTIKPKLG----------------LSAKNYGR----AVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIY 226 (475)
T ss_pred CceEEEecccccC----------------CCHHHHHH----HHHHHHcCCCcccccCccCCCCCCCCHHHHHHHHHHHHH
Confidence 5566666777 44 36666444 5556777999988 222 2222333 445555554
Q ss_pred H----hCCCccEEEEEEEcCCCcccCCCcHHHH---HHHhhcCCCceEEEEcCC--ChhhhHHHHHHHHhhCCCcEEEEe
Q 021144 205 E----EGITIPAWFSFNSKDGINVVSGDSILEC---ASIADSCEQVVAVGINCT--SPRFIHGLILSVRKVTSKPVIIYP 275 (317)
Q Consensus 205 ~----~~~~~pv~iSf~~~~~~~l~~G~~l~~a---~~~~~~~~~~~aiGvNC~--~p~~~~~~l~~l~~~~~~pl~vyP 275 (317)
+ ++ .+.+.++.+ ++.++.+. ++.+.+ .+..++.+|.. +... ...|....+..+.||...|
T Consensus 227 ~a~~eTG--~~~~y~~Ni-------Ta~~~~em~~ra~~a~e-~G~~~~mv~~~~~G~~a-l~~l~~~~~~~~l~IhaHr 295 (475)
T CHL00040 227 KAQAETG--EIKGHYLNA-------TAGTCEEMYKRAVFARE-LGVPIVMHDYLTGGFTA-NTSLAHYCRDNGLLLHIHR 295 (475)
T ss_pred HHHHhhC--Ccceeeecc-------CCCCHHHHHHHHHHHHH-cCCceEEEeccccccch-HHHHHHHhhhcCceEEecc
Confidence 3 44 444445543 22223333 333433 46677777774 3333 2333333234678999988
Q ss_pred CCC
Q 021144 276 NSG 278 (317)
Q Consensus 276 NaG 278 (317)
+.-
T Consensus 296 A~~ 298 (475)
T CHL00040 296 AMH 298 (475)
T ss_pred ccc
Confidence 874
No 435
>PLN02461 Probable pyruvate kinase
Probab=36.61 E-value=4.9e+02 Score=26.84 Aligned_cols=52 Identities=12% Similarity=0.068 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEE
Q 021144 161 VSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSF 216 (317)
Q Consensus 161 ~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf 216 (317)
++..+..+.. +.-++.+||+|.+==+.+..+++.+.+.+.+.+.+.+++.-.
T Consensus 191 ltekD~~di~----~f~~~~~vD~ia~SFVr~a~DV~~~r~~l~~~~~~~~IiAKI 242 (511)
T PLN02461 191 LTEKDKEDIL----QWGVPNKIDFIALSFVRKGSDLVEVRKVLGEHAKSILLISKV 242 (511)
T ss_pred CCHHHHHHHH----HHHhhcCCCEEEECCCCCHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 5666655521 233568999999888888888888888887765456777555
No 436
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=36.59 E-value=3.6e+02 Score=25.26 Aligned_cols=113 Identities=21% Similarity=0.284 Sum_probs=69.1
Q ss_pred CeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccE
Q 021144 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPA 212 (317)
Q Consensus 133 ~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv 212 (317)
+.+|..++ |||. |. .|.++ +.+...+.+.++|+|.+-+|-= .|+...++.+.+.+ +||
T Consensus 76 ~~~vv~Dm-PF~s-----------y~--~s~~~---a~~nA~r~~ke~gA~aVKlEGG---~~~~~~i~~L~~~g--IPV 133 (268)
T COG0413 76 NAFVVADL-PFGS-----------YE--VSPEQ---ALKNAARLMKEAGADAVKLEGG---EEMAETIKRLTERG--IPV 133 (268)
T ss_pred CeeEEeCC-CCcc-----------cC--CCHHH---HHHHHHHHHHHhCCCEEEEcCC---HHHHHHHHHHHHcC--Cce
Confidence 56676666 5654 32 24444 4555566677799999999964 56666666676655 999
Q ss_pred EEEEEEcCC------CcccCCCcHHHHHHHhh-----cCCCceEEEEcCCChhhhHHHHHHHHhhCCCcE
Q 021144 213 WFSFNSKDG------INVVSGDSILECASIAD-----SCEQVVAVGINCTSPRFIHGLILSVRKVTSKPV 271 (317)
Q Consensus 213 ~iSf~~~~~------~~l~~G~~l~~a~~~~~-----~~~~~~aiGvNC~~p~~~~~~l~~l~~~~~~pl 271 (317)
+-.+-+.+. |.=.-|.+-+++-+.++ +..++.++=+-|+.-+ +-+++.+..+.|.
T Consensus 134 ~gHiGLtPQ~v~~~GGykvqGr~~~~a~~l~~dA~ale~AGaf~ivlE~Vp~~----lA~~IT~~lsiPt 199 (268)
T COG0413 134 MGHIGLTPQSVNWLGGYKVQGRTEESAEKLLEDAKALEEAGAFALVLECVPAE----LAKEITEKLSIPT 199 (268)
T ss_pred EEEecCChhhhhccCCeeeecCCHHHHHHHHHHHHHHHhcCceEEEEeccHHH----HHHHHHhcCCCCE
Confidence 987765442 22223444444433332 1358899999999533 4445555566774
No 437
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=36.42 E-value=4.8e+02 Score=26.58 Aligned_cols=66 Identities=23% Similarity=0.206 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhCCCCEEEe-ccCC--CHHHHHHHHHHHHHhCCCc-cEEEEEEEcCCCcccCCCcHHHHHHHhh
Q 021144 169 FHRRRVLILANSGADLIAF-ETIP--NKLEAKAYAELLEEEGITI-PAWFSFNSKDGINVVSGDSILECASIAD 238 (317)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~-ET~p--~~~Ea~a~~~~~~~~~~~~-pv~iSf~~~~~~~l~~G~~l~~a~~~~~ 238 (317)
|..+.++.+.++|+|.|.+ -|+- ...++..+++.+++.-+.. .+.++|-|.++ .|..++.++..+.
T Consensus 147 ~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND----~GlAvANalaAv~ 216 (494)
T TIGR00973 147 FLARIVEAAINAGATTINIPDTVGYALPAEYGNLIKGLRENVPNIDKAILSVHCHND----LGLAVANSLAAVQ 216 (494)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHHhhccccCceEEEEeCCC----CChHHHHHHHHHH
Confidence 4444566677789998854 4543 5778888888887643222 36789988775 3555555544443
No 438
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=36.06 E-value=4.3e+02 Score=25.97 Aligned_cols=28 Identities=11% Similarity=-0.094 Sum_probs=23.3
Q ss_pred ChHHHHHHHHHHHHhhcccccccccccc
Q 021144 53 SPHLVRKVHLDYLDAGANIIITASYQAT 80 (317)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~TnTy~as 80 (317)
+++.+.++-+..-++|||.|+-|-.--|
T Consensus 111 ~~~~~~~~a~~~~~~g~d~ielN~scP~ 138 (420)
T PRK08318 111 NEEEWKEIAPLVEETGADGIELNFGCPH 138 (420)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 6787777777778899999999988766
No 439
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=35.97 E-value=2.1e+02 Score=27.53 Aligned_cols=75 Identities=13% Similarity=0.144 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCChhhhHHHHHHHHhhCCCc
Q 021144 191 PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKP 270 (317)
Q Consensus 191 p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~p~~~~~~l~~l~~~~~~p 270 (317)
||...-...-.+++..| ...+. +.. ....+.-|+++.|.+..+.. . +++|.+-+.... .++.+.+..+.|
T Consensus 55 pSTRTR~SFe~A~~~LG-g~~i~--l~~-~~ss~~kgEsl~DTarvls~-y-~D~iviR~~~~~----~~~~~a~~s~vP 124 (332)
T PRK04284 55 DSTRTRCAFEVAAYDQG-AHVTY--LGP-TGSQMGKKESTKDTARVLGG-M-YDGIEYRGFSQR----TVETLAEYSGVP 124 (332)
T ss_pred CChhHHHHHHHHHHHcC-CeEEE--cCC-ccccCCCCcCHHHHHHHHHH-h-CCEEEEecCchH----HHHHHHHhCCCC
Confidence 56665444444556665 22222 211 22345568888888877764 2 677777665422 345555556667
Q ss_pred EEEEeCCC
Q 021144 271 VIIYPNSG 278 (317)
Q Consensus 271 l~vyPNaG 278 (317)
++ |+|
T Consensus 125 VI---Na~ 129 (332)
T PRK04284 125 VW---NGL 129 (332)
T ss_pred EE---ECC
Confidence 54 554
No 440
>PRK07094 biotin synthase; Provisional
Probab=35.73 E-value=2e+02 Score=26.99 Aligned_cols=72 Identities=19% Similarity=0.117 Sum_probs=43.4
Q ss_pred HHHHHHHhCCCCEEE--eccC-----------CCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHH--
Q 021144 172 RRVLILANSGADLIA--FETI-----------PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASI-- 236 (317)
Q Consensus 172 ~qi~~l~~~gvD~l~--~ET~-----------p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~-- 236 (317)
+.++.|.++|+|.+. +||. .+.++...+++.+++.+ .++...|.+- ..|++.++....
T Consensus 130 e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~G--i~v~~~~iiG-----lpget~ed~~~~l~ 202 (323)
T PRK07094 130 EEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELG--YEVGSGFMVG-----LPGQTLEDLADDIL 202 (323)
T ss_pred HHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcC--CeecceEEEE-----CCCCCHHHHHHHHH
Confidence 345567778888653 4776 24566666677777765 5666666542 135566655443
Q ss_pred -hhcCCCceEEEEcCC
Q 021144 237 -ADSCEQVVAVGINCT 251 (317)
Q Consensus 237 -~~~~~~~~aiGvNC~ 251 (317)
+.+ .++..++++--
T Consensus 203 ~l~~-l~~~~v~~~~~ 217 (323)
T PRK07094 203 FLKE-LDLDMIGIGPF 217 (323)
T ss_pred HHHh-CCCCeeeeecc
Confidence 333 46677777663
No 441
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=35.66 E-value=2.2e+02 Score=26.18 Aligned_cols=119 Identities=15% Similarity=0.018 Sum_probs=68.2
Q ss_pred CCCCEEEe--ccCCCHHH--HHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCC---
Q 021144 180 SGADLIAF--ETIPNKLE--AKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTS--- 252 (317)
Q Consensus 180 ~gvD~l~~--ET~p~~~E--a~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~--- 252 (317)
.-+|++=| -|..-..+ ++..++++++.+ +++..--|+-.-. +.. ..+.+.++.+++ .+.++|=|+=..
T Consensus 23 ~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~--V~v~~GGtl~E~~-~~q-~~~~~Yl~~~k~-lGf~~IEiS~G~~~i 97 (237)
T TIGR03849 23 DYITFVKFGWGTSALIDRDIVKEKIEMYKDYG--IKVYPGGTLFEIA-HSK-GKFDEYLNECDE-LGFEAVEISDGSMEI 97 (237)
T ss_pred hheeeEEecCceEeeccHHHHHHHHHHHHHcC--CeEeCCccHHHHH-HHh-hhHHHHHHHHHH-cCCCEEEEcCCccCC
Confidence 34787744 34444444 777888888866 5555111110000 001 123333444544 577777777752
Q ss_pred h-hhhHHHHHHHHhhCCCcEEEEeCCCCccccccccccccCCCChhhHHHHHHHHHHcccc
Q 021144 253 P-RFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVVSFSLHFFPLELILNPFASCRLI 312 (317)
Q Consensus 253 p-~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~ 312 (317)
| +....+++.+++ .-+.|.|--|... .+ .....++++|.+.+++++++|.=
T Consensus 98 ~~~~~~rlI~~~~~---~g~~v~~EvG~K~-~~-----~~~~~~~~~~i~~~~~~LeAGA~ 149 (237)
T TIGR03849 98 SLEERCNLIERAKD---NGFMVLSEVGKKS-PE-----KDSELTPDDRIKLINKDLEAGAD 149 (237)
T ss_pred CHHHHHHHHHHHHh---CCCeEeccccccC-Cc-----ccccCCHHHHHHHHHHHHHCCCc
Confidence 3 445566666554 4577888877532 11 12246899999999999999964
No 442
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=35.58 E-value=2.7e+02 Score=27.09 Aligned_cols=71 Identities=14% Similarity=0.085 Sum_probs=43.5
Q ss_pred HHHHHHhCCCCEEEeccC----------CCHHHHHHHHHHHHHhCCCccEEEEEEEc-CCCcccCCCcHHHHHHHhhcCC
Q 021144 173 RVLILANSGADLIAFETI----------PNKLEAKAYAELLEEEGITIPAWFSFNSK-DGINVVSGDSILECASIADSCE 241 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~----------p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~-~~~~l~~G~~l~~a~~~~~~~~ 241 (317)
.+...++.|+|.+.+--- .+.+|++.+++.+.+.+ +.+++.++.- -++.+ ..+.+.+..+.+ .
T Consensus 18 ~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~g--kk~~V~~N~~~~~~~~---~~~~~~l~~l~e-~ 91 (347)
T COG0826 18 DLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAG--KKVYVAVNTLLHNDEL---ETLERYLDRLVE-L 91 (347)
T ss_pred HHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcC--CeEEEEeccccccchh---hHHHHHHHHHHH-c
Confidence 345566789999977522 45778899999888876 6677666421 11111 224555555554 4
Q ss_pred CceEEEEc
Q 021144 242 QVVAVGIN 249 (317)
Q Consensus 242 ~~~aiGvN 249 (317)
++++|=++
T Consensus 92 GvDaviv~ 99 (347)
T COG0826 92 GVDAVIVA 99 (347)
T ss_pred CCCEEEEc
Confidence 67766554
No 443
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=35.53 E-value=1.8e+02 Score=27.16 Aligned_cols=45 Identities=27% Similarity=0.325 Sum_probs=30.0
Q ss_pred ccCCCcHHHHHHHhhcCCCceEEEEcCCChhhhHHHHHHHH-hhCCCcE--EEEeCC
Q 021144 224 VVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVR-KVTSKPV--IIYPNS 277 (317)
Q Consensus 224 l~~G~~l~~a~~~~~~~~~~~aiGvNC~~p~~~~~~l~~l~-~~~~~pl--~vyPNa 277 (317)
+.||..++++-..+.+ |++..+.+..+++.++ +..+.|+ +.|-|-
T Consensus 51 ~ADGpvIq~A~~rAL~---------~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~ 98 (259)
T PF00290_consen 51 VADGPVIQKASQRALK---------NGFTLEKIFELVKEIRKKEPDIPIVLMTYYNP 98 (259)
T ss_dssp TTSSHHHHHHHHHHHH---------TT--HHHHHHHHHHHHHHCTSSEEEEEE-HHH
T ss_pred CCCCHHHHHHHHHHHH---------CCCCHHHHHHHHHHHhccCCCCCEEEEeeccH
Confidence 5689888887766543 2344778888888888 6667884 566664
No 444
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=35.51 E-value=2.6e+02 Score=26.58 Aligned_cols=82 Identities=18% Similarity=0.220 Sum_probs=54.0
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCCChhhhHHHHHHH
Q 021144 184 LIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSV 263 (317)
Q Consensus 184 ~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~~p~~~~~~l~~l 263 (317)
++++| ||.+.-...-.++...| ..+++++- .+..+..|++++|.+..+.. .++++|.+-+.... .++.+
T Consensus 50 ~lF~~--pSTRTR~SFe~A~~~LG-g~~i~l~~---~~~~~~kgEs~~Dta~vls~-y~~D~iv~R~~~~~----~~~~~ 118 (305)
T PRK00856 50 NLFFE--PSTRTRLSFELAAKRLG-ADVINFSA---STSSVSKGETLADTIRTLSA-MGADAIVIRHPQSG----AARLL 118 (305)
T ss_pred EEecc--CCcchHHHHHHHHHHcC-CcEEEeCC---CcccCCCCcCHHHHHHHHHh-cCCCEEEEeCCChH----HHHHH
Confidence 34444 67777555556677776 34544432 23356789999999998874 45888888876433 45666
Q ss_pred HhhCCCcEEEEeCCCC
Q 021144 264 RKVTSKPVIIYPNSGE 279 (317)
Q Consensus 264 ~~~~~~pl~vyPNaG~ 279 (317)
.+..+.|+| |+|.
T Consensus 119 a~~~~vPVI---Na~~ 131 (305)
T PRK00856 119 AESSDVPVI---NAGD 131 (305)
T ss_pred HHHCCCCEE---ECCC
Confidence 666788974 7763
No 445
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=35.51 E-value=4.1e+02 Score=25.54 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=20.6
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEE
Q 021144 147 LADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLI 185 (317)
Q Consensus 147 l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l 185 (317)
|.||. |.... .++.++..+. ++.|.++|||.|
T Consensus 10 LRDG~-q~~~~--~f~~~~~~~i----a~~Ld~aGV~~I 41 (333)
T TIGR03217 10 LRDGM-HAIRH--QFTIEQVRAI----AAALDEAGVDAI 41 (333)
T ss_pred CCCCC-cCCCC--cCCHHHHHHH----HHHHHHcCCCEE
Confidence 55664 33322 3677776664 556888999988
No 446
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=35.45 E-value=3.1e+02 Score=24.03 Aligned_cols=101 Identities=19% Similarity=0.170 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHH----HHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHH---
Q 021144 162 SLETLKEFHRRRVLILANSGADLIAFETIPNKL----EAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECA--- 234 (317)
Q Consensus 162 s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~----Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~--- 234 (317)
..+++.+.+ +.+. .+.|++++|+.+.+. ......+.++..+ .|+++-.... .| .+.++.
T Consensus 89 ~~~~i~~~~----~~l~-~~~D~viIEg~gg~~~~~~~~~~~adl~~~l~--~pvilV~~~~------~~-~i~~~~~~i 154 (222)
T PRK00090 89 DLEKISAAL----RRLA-QQYDLVLVEGAGGLLVPLTEDLTLADLAKQLQ--LPVILVVGVK------LG-CINHTLLTL 154 (222)
T ss_pred CHHHHHHHH----HHHH-hhCCEEEEECCCceeccCCCCCcHHHHHHHhC--CCEEEEECCC------Cc-HHHHHHHHH
Confidence 445555444 3333 568999999986542 1123445666654 7877555321 12 244333
Q ss_pred HHhhc-CCCceEEEEcCCChh---hhHHHHHHHHhhCCCcE-EEEeC
Q 021144 235 SIADS-CEQVVAVGINCTSPR---FIHGLILSVRKVTSKPV-IIYPN 276 (317)
Q Consensus 235 ~~~~~-~~~~~aiGvNC~~p~---~~~~~l~~l~~~~~~pl-~vyPN 276 (317)
+.+.. ...+.++=+|+..+. .....++.+.+....|+ .+-|.
T Consensus 155 ~~l~~~~~~i~gvIlN~~~~~~~~~~~~~~~~l~~~~gi~vlg~ip~ 201 (222)
T PRK00090 155 EAIRARGLPLAGWVANGIPPEPGLRHAENLATLERLLPAPLLGELPY 201 (222)
T ss_pred HHHHHCCCCeEEEEEccCCCcchhHHHHHHHHHHHHcCCCeEEecCC
Confidence 33332 224557778987544 34456677777777774 46665
No 447
>PRK05398 formyl-coenzyme A transferase; Provisional
Probab=35.40 E-value=1.5e+02 Score=29.47 Aligned_cols=40 Identities=15% Similarity=0.242 Sum_probs=25.1
Q ss_pred cCCChHHHHHHHHHHHHhhccccccccccccHHHHHhCCCCHHHH
Q 021144 50 LVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEA 94 (317)
Q Consensus 50 ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~ 94 (317)
.+.+|+-...+++ |-+.|||+++| |+ +..+.+.|++.++.
T Consensus 73 DLk~~eGr~~l~~--Lv~~ADVvien-~r--pg~~~rlGl~~e~L 112 (416)
T PRK05398 73 DTKTPEGKEVLEK--LIREADVLVEN-FG--PGALDRMGFTWERI 112 (416)
T ss_pred eCCCHHHHHHHHH--HHhcCCEEEEC-CC--cchHHHcCCCHHHH
Confidence 3566664444433 23569999998 55 34567779986544
No 448
>PLN02321 2-isopropylmalate synthase
Probab=35.31 E-value=5.7e+02 Score=27.10 Aligned_cols=53 Identities=15% Similarity=0.097 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhCCCCEEEec-cCC--CHHHHHHHHHHHHHhCCCc-cEEEEEEEcCC
Q 021144 169 FHRRRVLILANSGADLIAFE-TIP--NKLEAKAYAELLEEEGITI-PAWFSFNSKDG 221 (317)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~E-T~p--~~~Ea~a~~~~~~~~~~~~-pv~iSf~~~~~ 221 (317)
|-.+.++.+.++|+|.|.+= |+- ...|+..+++.+++.-+.. ++.+++-|.++
T Consensus 241 ~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND 297 (632)
T PLN02321 241 FLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKANTPGIENVIISTHCQND 297 (632)
T ss_pred HHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCC
Confidence 34445667788999998553 543 5778888998888753233 48899999775
No 449
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=35.23 E-value=61 Score=27.72 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=48.0
Q ss_pred ccCCCcHHHHHHHhhcCCCceEEEEcCC-C----hhhhHHHHHHHHhhC----CCcEEEEeCCCCccccccccccccCCC
Q 021144 224 VVSGDSILECASIADSCEQVVAVGINCT-S----PRFIHGLILSVRKVT----SKPVIIYPNSGETYNAELKKWVVSFSL 294 (317)
Q Consensus 224 l~~G~~l~~a~~~~~~~~~~~aiGvNC~-~----p~~~~~~l~~l~~~~----~~pl~vyPNaG~~~d~~~~~w~~~~~~ 294 (317)
+.|++...+++..+...+.+.+|-|||. + .+....+++.++... ++|++++- .|..-|
T Consensus 55 mid~~~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v-~GT~~d------------ 121 (153)
T PF00549_consen 55 MIDPSTRNEALEIEAADPEVKVILVDIVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARV-CGTNAD------------ 121 (153)
T ss_dssp TT-SSHHHHHHHHHHTSTTESEEEEEEESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEE-ESTTCH------------
T ss_pred CcCHHHHHHHHHHHhcCCCccEEEEEeccccCchHHHHHHHHHHHHhccccCCCCcEEEEe-eeecCC------------
Confidence 3468889999988877788999999994 3 345566666666543 67888876 332222
Q ss_pred ChhhHHHHHHHHHHccccc
Q 021144 295 HFFPLELILNPFASCRLIS 313 (317)
Q Consensus 295 ~~~~~~~~~~~w~~~~~~~ 313 (317)
|+.+.++...+.+.|..-
T Consensus 122 -pq~~~~~~~~L~~~G~~v 139 (153)
T PF00549_consen 122 -PQGRMGQAGALEDAGVIV 139 (153)
T ss_dssp -TTSCHHHHHHHHCTTCSC
T ss_pred -CCCcHHHHHHHHhCCCcc
Confidence 333445555566666543
No 450
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=35.20 E-value=2.4e+02 Score=25.39 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=33.2
Q ss_pred HHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHh
Q 021144 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA 237 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~ 237 (317)
++.+.++|+|++.+=.-.....++.+++.+++.+ +.+.+++. ..++++++...+
T Consensus 81 i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G--~~~gval~--------p~t~~e~l~~~l 134 (228)
T PTZ00170 81 VDDFAKAGASQFTFHIEATEDDPKAVARKIREAG--MKVGVAIK--------PKTPVEVLFPLI 134 (228)
T ss_pred HHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCC--CeEEEEEC--------CCCCHHHHHHHH
Confidence 4667789999986532223333677888888876 56666552 234555554444
No 451
>PRK01060 endonuclease IV; Provisional
Probab=35.07 E-value=3.5e+02 Score=24.57 Aligned_cols=71 Identities=8% Similarity=0.002 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHH--hCCCCEEEeccCCCH-----HHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHH----H
Q 021144 164 ETLKEFHRRRVLILA--NSGADLIAFETIPNK-----LEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSIL----E 232 (317)
Q Consensus 164 ~el~~~h~~qi~~l~--~~gvD~l~~ET~p~~-----~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~----~ 232 (317)
++..+...+.++.+. ..||. |++|+++.. .....+.+.++..+ -|-.+.++++-..-...|.++. +
T Consensus 120 ~~~~~~~~e~l~~l~~~~~gv~-l~iEn~~~~~~~~~~~~~~~~~l~~~v~--~~~~vg~~lD~gH~~~~g~d~~~~~~~ 196 (281)
T PRK01060 120 EDCLARIAESLNEALDKTQGVT-IVLENTAGQGSELGRRFEELARIIDGVE--DKSRVGVCLDTCHAFAAGYDLREDFEG 196 (281)
T ss_pred HHHHHHHHHHHHHHHhcCCCCE-EEEecCCCCCCcccCCHHHHHHHHHhcC--CcccEEEEEeHHhHhhcCCChHHHHHH
Confidence 345566666666653 35675 567998631 12233344444433 2323455554333344667766 5
Q ss_pred HHHHh
Q 021144 233 CASIA 237 (317)
Q Consensus 233 a~~~~ 237 (317)
.+..+
T Consensus 197 ~~~~~ 201 (281)
T PRK01060 197 VLAEF 201 (281)
T ss_pred HHHHH
Confidence 55544
No 452
>PLN03231 putative alpha-galactosidase; Provisional
Probab=35.07 E-value=1.3e+02 Score=29.50 Aligned_cols=54 Identities=24% Similarity=0.237 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEecc-----CCCHHHHHHHHHHHHHhCCCccEEEEEE
Q 021144 162 SLETLKEFHRRRVLILANSGADLIAFET-----IPNKLEAKAYAELLEEEGITIPAWFSFN 217 (317)
Q Consensus 162 s~~el~~~h~~qi~~l~~~gvD~l~~ET-----~p~~~Ea~a~~~~~~~~~~~~pv~iSf~ 217 (317)
+..-.++||...++.|++=|||+|=.-- .+...+..+..+++++++ .|++.|++
T Consensus 157 ~~~gaq~y~~~~a~~fA~WGVDylK~D~c~~~~~~~~~~y~~m~~AL~~tG--RpIv~Slc 215 (357)
T PLN03231 157 SSEGGKLFIQSLYDQYASWGIDFIKHDCVFGAENPQLDEILTVSKAIRNSG--RPMIYSLS 215 (357)
T ss_pred cchhHHHHHHHHHHHHHHhCCCEEeecccCCCCcccHHHHHHHHHHHHHhC--CCeEEEec
Confidence 4445677888889999999999995432 245678888889999877 89998885
No 453
>PRK08227 autoinducer 2 aldolase; Validated
Probab=35.06 E-value=3.8e+02 Score=25.03 Aligned_cols=112 Identities=11% Similarity=0.021 Sum_probs=61.5
Q ss_pred HHhCCCCEEEeccCC-CHHHHHHHH------HHHHHhCCCccEEEEEEEcCCCcccCCCc-HHHHHHHhhcCCCceEEEE
Q 021144 177 LANSGADLIAFETIP-NKLEAKAYA------ELLEEEGITIPAWFSFNSKDGINVVSGDS-ILECASIADSCEQVVAVGI 248 (317)
Q Consensus 177 l~~~gvD~l~~ET~p-~~~Ea~a~~------~~~~~~~~~~pv~iSf~~~~~~~l~~G~~-l~~a~~~~~~~~~~~aiGv 248 (317)
.++.|+|.+.+=.++ +-.|.+.+. +-+.+. ++|+++ +.- ......++.. +.-|++...+ .+++.|-+
T Consensus 103 AvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~--G~Plla-~~p-rG~~~~~~~~~ia~aaRiaaE-LGADiVK~ 177 (264)
T PRK08227 103 AVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRY--GMPVMA-VTA-VGKDMVRDARYFSLATRIAAE-MGAQIIKT 177 (264)
T ss_pred HHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHh--CCcEEE-Eec-CCCCcCchHHHHHHHHHHHHH-HcCCEEec
Confidence 445899999876555 444444333 333343 499988 542 2222333322 3334444443 68999999
Q ss_pred cCCChhhhHHHHHHHHhhCCCcEEEEeCCCCccccccccccccCCCChhhHHHHHHHHHHccccc
Q 021144 249 NCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVVSFSLHFFPLELILNPFASCRLIS 313 (317)
Q Consensus 249 NC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~ 313 (317)
+.+. +.+.. +-.....|+++- +|.. .+.+++.+.+.+-+++|.-+
T Consensus 178 ~y~~-~~f~~----vv~a~~vPVvia--GG~k-------------~~~~~~L~~v~~ai~aGa~G 222 (264)
T PRK08227 178 YYVE-EGFER----ITAGCPVPIVIA--GGKK-------------LPERDALEMCYQAIDEGASG 222 (264)
T ss_pred CCCH-HHHHH----HHHcCCCcEEEe--CCCC-------------CCHHHHHHHHHHHHHcCCce
Confidence 9875 33333 333456787643 2211 23455666777667666554
No 454
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=35.00 E-value=27 Score=33.38 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.1
Q ss_pred CCChHHHHHHHHHHHHhhccccccc
Q 021144 51 VSSPHLVRKVHLDYLDAGANIIITA 75 (317)
Q Consensus 51 l~~Pe~V~~iH~~Yl~AGAdiI~Tn 75 (317)
++....|.+.+..|-+||||+|.|.
T Consensus 294 ide~~~vlEsL~~~kRAGAd~IiTY 318 (330)
T COG0113 294 IDEEKVVLESLTSIKRAGADLIITY 318 (330)
T ss_pred cchHHHHHHHHHHHHhcCCCEEEee
Confidence 5777799999999999999999873
No 455
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=34.93 E-value=4.3e+02 Score=28.59 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=16.6
Q ss_pred HHHHHHHhCCCCEEEeccCCC
Q 021144 172 RRVLILANSGADLIAFETIPN 192 (317)
Q Consensus 172 ~qi~~l~~~gvD~l~~ET~p~ 192 (317)
+.+..|.+..||.|.+|+-.+
T Consensus 651 ~i~~~i~~l~vD~~~lE~~rs 671 (758)
T PRK05222 651 DIIDAIAALDADVISIETSRS 671 (758)
T ss_pred HHHHHHHhCCCCEEEEEecCC
Confidence 356777778999999997644
No 456
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=34.91 E-value=5.2e+02 Score=26.52 Aligned_cols=92 Identities=12% Similarity=0.062 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhCCCCEEEecc---CCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCce
Q 021144 168 EFHRRRVLILANSGADLIAFET---IPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVV 244 (317)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~ET---~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~ 244 (317)
+.-.++++.+.+.|+|+|=+-. -|..++++.+++.+++.. +.| +|+ |-.....+-+.+.. |++
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~-~~p--ISI---------DT~~~~v~eaAL~a--GAd 230 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDAL-DSP--VIA---------DTPTLDELYEALKA--GAS 230 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhC-CCc--EEE---------eCCCHHHHHHHHHc--CCC
Confidence 5566688888899999996653 456666778888887642 344 566 22223333333332 433
Q ss_pred EEEEcCCChhhhHHHHHHHHhhCCCcEEEEeC
Q 021144 245 AVGINCTSPRFIHGLILSVRKVTSKPVIIYPN 276 (317)
Q Consensus 245 aiGvNC~~p~~~~~~l~~l~~~~~~pl~vyPN 276 (317)
.||=.+...+..+++.++. .+.|+++.|+
T Consensus 231 --iINsVs~~~~d~~~~l~a~-~g~~vVlm~~ 259 (499)
T TIGR00284 231 --GVIMPDVENAVELASEKKL-PEDAFVVVPG 259 (499)
T ss_pred --EEEECCccchhHHHHHHHH-cCCeEEEEcC
Confidence 2443322233333333333 3668888885
No 457
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=34.90 E-value=92 Score=28.69 Aligned_cols=45 Identities=16% Similarity=0.165 Sum_probs=34.0
Q ss_pred HHHHHHHHHhCCCCEEEeccCCCHH--HHHHHHHHHHHhCCCccEEEE
Q 021144 170 HRRRVLILANSGADLIAFETIPNKL--EAKAYAELLEEEGITIPAWFS 215 (317)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET~p~~~--Ea~a~~~~~~~~~~~~pv~iS 215 (317)
..+.++.+.++|.|.|++---.... .+...++.+++.. ++|+|+-
T Consensus 30 ~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~-~lPvilf 76 (240)
T COG1646 30 ADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERT-DLPVILF 76 (240)
T ss_pred cHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhc-CCCEEEe
Confidence 3457788999999999998555444 4788888899643 6999853
No 458
>PLN02591 tryptophan synthase
Probab=34.90 E-value=3.7e+02 Score=24.82 Aligned_cols=102 Identities=15% Similarity=0.145 Sum_probs=54.1
Q ss_pred HHHHHHHHHhCCCCEEEeccCC-----------------------CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccC
Q 021144 170 HRRRVLILANSGADLIAFETIP-----------------------NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVS 226 (317)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET~p-----------------------~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~ 226 (317)
..+.++.|.++|||+|=+- +| +++....+++-+++. .+.|++ -|+.-+. -...
T Consensus 18 ~~~~~~~l~~~Gad~iElG-iPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~-~~~p~i-lm~Y~N~-i~~~ 93 (250)
T PLN02591 18 TAEALRLLDACGADVIELG-VPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQ-LSCPIV-LFTYYNP-ILKR 93 (250)
T ss_pred HHHHHHHHHHCCCCEEEEC-CCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEE-EEecccH-HHHh
Confidence 4456788999999998221 11 112222223333332 357865 4443221 1222
Q ss_pred CCcHHHHHHHhhcCCCceEEEEcCCChhhhHHHHHHHHhhCCCcEE-EEeCCC
Q 021144 227 GDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVI-IYPNSG 278 (317)
Q Consensus 227 G~~l~~a~~~~~~~~~~~aiGvNC~~p~~~~~~l~~l~~~~~~pl~-vyPNaG 278 (317)
| +++.++.+.+ .+++++-+.=-.++....+.+..+++-=.++. |-||.-
T Consensus 94 G--~~~F~~~~~~-aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~ 143 (250)
T PLN02591 94 G--IDKFMATIKE-AGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTP 143 (250)
T ss_pred H--HHHHHHHHHH-cCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 3 4556666655 47787777766667777776666654222333 336654
No 459
>PRK10206 putative oxidoreductase; Provisional
Probab=34.81 E-value=1.4e+02 Score=28.61 Aligned_cols=46 Identities=22% Similarity=0.193 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhCCCCEEEec--cCCCHHHHHHHHHHHHHhCCCccEEEEEE
Q 021144 169 FHRRRVLILANSGADLIAFE--TIPNKLEAKAYAELLEEEGITIPAWFSFN 217 (317)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~E--T~p~~~Ea~a~~~~~~~~~~~~pv~iSf~ 217 (317)
.|.+++...+++|..+|. | --.+++|++.+++++++.+ +++++.+.
T Consensus 76 ~H~~~~~~al~aGkhVl~-EKPla~~~~ea~~l~~~a~~~~--~~l~v~~~ 123 (344)
T PRK10206 76 SHFEYAKRALEAGKNVLV-EKPFTPTLAEAKELFALAKSKG--LTVTPYQN 123 (344)
T ss_pred HHHHHHHHHHHcCCcEEE-ecCCcCCHHHHHHHHHHHHHhC--CEEEEEEe
Confidence 588888888889987775 7 2346889999999888765 66666554
No 460
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=34.79 E-value=1.1e+02 Score=24.63 Aligned_cols=48 Identities=17% Similarity=0.141 Sum_probs=35.5
Q ss_pred cHHHHHHHhhcCCCceEEEEcCC-ChhhhHHHHHHHHhhCCCcEEEEeCC
Q 021144 229 SILECASIADSCEQVVAVGINCT-SPRFIHGLILSVRKVTSKPVIIYPNS 277 (317)
Q Consensus 229 ~l~~a~~~~~~~~~~~aiGvNC~-~p~~~~~~l~~l~~~~~~pl~vyPNa 277 (317)
.+.+.++.+.+ .++.|++|++. ....+.+-+.++.+..+.||+..|..
T Consensus 60 ~~~~~i~~L~~-~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~ip~~ 108 (123)
T PF07905_consen 60 ELREFIRELAE-KGAAGLGIKTGRYLDEIPEEIIELADELGLPLIEIPWE 108 (123)
T ss_pred HHHHHHHHHHH-CCCeEEEEeccCccccCCHHHHHHHHHcCCCEEEeCCC
Confidence 36667777765 58999999998 44456566666666678999999974
No 461
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=34.66 E-value=2e+02 Score=29.85 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHh---CCCCEEEeccCCCHHHHHHHHHHHHH
Q 021144 167 KEFHRRRVLILAN---SGADLIAFETIPNKLEAKAYAELLEE 205 (317)
Q Consensus 167 ~~~h~~qi~~l~~---~gvD~l~~ET~p~~~Ea~a~~~~~~~ 205 (317)
.+.|+.|++++.. .|..-|+|=-+.+.+|++.+++++++
T Consensus 366 ~~lf~~QlrAI~ra~~~G~~~Im~PmV~t~eE~~~~~~~~~~ 407 (565)
T TIGR01417 366 EEILRTQLRAILRASAYGKLRIMFPMVATVEEIRAVKQELEE 407 (565)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHHH
Confidence 4577788887743 68999999999999999999988775
No 462
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=34.65 E-value=69 Score=29.47 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=28.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-hCCCCEEEec--cCC
Q 021144 156 DYGDAVSLETLKEFHRRRVLILA-NSGADLIAFE--TIP 191 (317)
Q Consensus 156 ~y~~~~s~~el~~~h~~qi~~l~-~~gvD~l~~E--T~p 191 (317)
+||. -+.+++.+...+.++.|. +.|||++++= |..
T Consensus 36 PYG~-ks~~~i~~~~~~~~~~L~~~~g~d~ivIaCNTA~ 73 (251)
T TIGR00067 36 PYGE-KSPEFILEYVLELLTFLKERHNIKLLVVACNTAS 73 (251)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHHHhCCCCEEEEeCchHH
Confidence 4554 689999999999999999 9999998654 554
No 463
>COG1679 Predicted aconitase [General function prediction only]
Probab=34.62 E-value=1e+02 Score=30.38 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEecc-CCCHHHHHHHHHHHHHhC--CCccEEEEEE
Q 021144 161 VSLETLKEFHRRRVLILANSGADLIAFET-IPNKLEAKAYAELLEEEG--ITIPAWFSFN 217 (317)
Q Consensus 161 ~s~~el~~~h~~qi~~l~~~gvD~l~~ET-~p~~~Ea~a~~~~~~~~~--~~~pv~iSf~ 217 (317)
++.+++.+.+.. .. .....+|+|.+-+ .-++.|++.+.++++... .++|+||+.+
T Consensus 271 i~~~d~~da~~~-l~-~~~~epdli~iGcPHaS~~E~~~la~~l~~r~~~~~~~~~V~~s 328 (403)
T COG1679 271 IEREDIDDAWER-LN-TADGEPDLIALGCPHASLEELRRLAELLKGRKRPAGVPLYVTTS 328 (403)
T ss_pred eeHHHHHHHHHH-hh-cCCCCCCEEEeCCCCCCHHHHHHHHHHHhccCCCCCCCEEEEcC
Confidence 345556665543 33 4445789999985 347999999999998765 6789999874
No 464
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=34.33 E-value=92 Score=28.93 Aligned_cols=43 Identities=16% Similarity=0.148 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEE
Q 021144 169 FHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWF 214 (317)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~i 214 (317)
.|.+.+..++++|.+++. +....+.+.+.+++++++.+ .++++
T Consensus 79 ~h~e~~~~aL~aGk~Vi~-~s~gal~~~~~L~~~A~~~g--~~l~v 121 (271)
T PRK13302 79 VLRAIVEPVLAAGKKAIV-LSVGALLRNEDLIDLARQNG--GQIIV 121 (271)
T ss_pred HHHHHHHHHHHcCCcEEE-ecchhHHhHHHHHHHHHHcC--CEEEE
Confidence 367777777889998875 66666778888888888865 66665
No 465
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane]
Probab=34.20 E-value=4.6e+02 Score=25.70 Aligned_cols=35 Identities=34% Similarity=0.369 Sum_probs=25.2
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCC-ccEEE
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGIT-IPAWF 214 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~-~pv~i 214 (317)
-+++|.++|||.|.+= +++|+.. +|+.+.+ .|+.+
T Consensus 46 va~~l~~~g~~~f~VA---~l~EAi~----LR~~gi~~~~Ilv 81 (360)
T COG0787 46 VAKALLDAGADGFGVA---SLEEAIE----LREAGITGAPILV 81 (360)
T ss_pred HHHHHHHcCCCEEEEC---cHHHHHH----HHHcCCCCCCEEE
Confidence 5668888999999865 6888775 4555555 47764
No 466
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=34.12 E-value=4.2e+02 Score=25.24 Aligned_cols=41 Identities=24% Similarity=0.161 Sum_probs=26.7
Q ss_pred HHHHHHHHHhCCCCEEEeccC-CCHHHHHHHHHHHHHhCCCccEEE
Q 021144 170 HRRRVLILANSGADLIAFETI-PNKLEAKAYAELLEEEGITIPAWF 214 (317)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET~-p~~~Ea~a~~~~~~~~~~~~pv~i 214 (317)
|..-++.|.+.|||+|- ||- +.. +...+...|... +.|+++
T Consensus 85 h~~Ea~~L~~~GvDiID-~Te~lrp--ad~~~~~~K~~f-~~~fma 126 (293)
T PRK04180 85 HFVEAQILEALGVDYID-ESEVLTP--ADEEYHIDKWDF-TVPFVC 126 (293)
T ss_pred HHHHHHHHHHcCCCEEe-ccCCCCc--hHHHHHHHHHHc-CCCEEc
Confidence 34448889999999995 876 223 334555556543 578774
No 467
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=33.97 E-value=3.5e+02 Score=24.32 Aligned_cols=66 Identities=20% Similarity=0.294 Sum_probs=43.6
Q ss_pred HHHHHHhCCCCEEEe--ccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcC
Q 021144 173 RVLILANSGADLIAF--ETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (317)
Q Consensus 173 qi~~l~~~gvD~l~~--ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC 250 (317)
.++.|.++|+|.|.| |+..+ ...+++.+|+.+ ..+-+++ ..+|+++.....+.....+...++|=
T Consensus 73 ~i~~~~~~gad~i~~H~Ea~~~---~~~~l~~ik~~g--~k~Glal--------nP~Tp~~~i~~~l~~~D~vlvMtV~P 139 (220)
T PRK08883 73 IIPDFAKAGASMITFHVEASEH---VDRTLQLIKEHG--CQAGVVL--------NPATPLHHLEYIMDKVDLILLMSVNP 139 (220)
T ss_pred HHHHHHHhCCCEEEEcccCccc---HHHHHHHHHHcC--CcEEEEe--------CCCCCHHHHHHHHHhCCeEEEEEecC
Confidence 356788899999975 76544 445667788876 4554444 24677877776666545566677776
Q ss_pred C
Q 021144 251 T 251 (317)
Q Consensus 251 ~ 251 (317)
.
T Consensus 140 G 140 (220)
T PRK08883 140 G 140 (220)
T ss_pred C
Confidence 4
No 468
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=33.79 E-value=3.6e+02 Score=24.40 Aligned_cols=95 Identities=17% Similarity=0.156 Sum_probs=51.4
Q ss_pred HHhCCCCEEEeccC--CCHHHHHHHHHHHHHhCCCccEEEEEEEcCC---C---------cccCCCcHHHHHHHhhcCCC
Q 021144 177 LANSGADLIAFETI--PNKLEAKAYAELLEEEGITIPAWFSFNSKDG---I---------NVVSGDSILECASIADSCEQ 242 (317)
Q Consensus 177 l~~~gvD~l~~ET~--p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~---~---------~l~~G~~l~~a~~~~~~~~~ 242 (317)
+.+.|+|.+.+-|. .+...++. ..+..+ +-.+.+|+.++++ + .-....++.+.++.+.+ .+
T Consensus 92 ~l~~Ga~~Viigt~~l~~p~~~~e---i~~~~g-~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~g 166 (253)
T PRK02083 92 LLRAGADKVSINSAAVANPELISE---AADRFG-SQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEE-LG 166 (253)
T ss_pred HHHcCCCEEEEChhHhhCcHHHHH---HHHHcC-CCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHH-cC
Confidence 44468999988653 34433333 334433 2457778876542 1 11124456667766654 46
Q ss_pred ceEEEE----cCC-ChhhhHHHHHHHHhhCCCcEEEEeCCC
Q 021144 243 VVAVGI----NCT-SPRFIHGLILSVRKVTSKPVIIYPNSG 278 (317)
Q Consensus 243 ~~aiGv----NC~-~p~~~~~~l~~l~~~~~~pl~vyPNaG 278 (317)
+..+-+ +.+ ....-..+++++.+..+.|++ .++|
T Consensus 167 ~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvi--a~GG 205 (253)
T PRK02083 167 AGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVI--ASGG 205 (253)
T ss_pred CCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEE--EECC
Confidence 666555 222 111224677778777778854 4554
No 469
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=33.57 E-value=4.3e+02 Score=25.20 Aligned_cols=116 Identities=17% Similarity=0.137 Sum_probs=60.1
Q ss_pred CCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCcc
Q 021144 132 RPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIP 211 (317)
Q Consensus 132 ~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~p 211 (317)
.++||.-++-- +..|++| .+..++..+-.+ ...++.-||-.. +++...++++-+.....++|
T Consensus 174 ~p~wISfT~~d-~~~lr~G----------t~l~eaa~~~~~-~~~iaa~gvNC~------~p~~~~a~i~~l~~~~~~~p 235 (300)
T COG2040 174 KPAWISFTLND-DTRLRDG----------TPLSEAAAILAG-LPNIAALGVNCC------HPDHIPAAIEELSKLLTGKP 235 (300)
T ss_pred CceEEEEEeCC-CCccCCC----------ccHHHHHHHHhc-CcchhheeeccC------ChhhhHHHHHHHHhcCCCCc
Confidence 58999998864 2234443 244444332222 111222234333 35556666666644445688
Q ss_pred EEEEEEE----cCCCcccC-CCcHHHHHHHhh---cCCCceEEEEcC-CChhhhHHHHHHHHh
Q 021144 212 AWFSFNS----KDGINVVS-GDSILECASIAD---SCEQVVAVGINC-TSPRFIHGLILSVRK 265 (317)
Q Consensus 212 v~iSf~~----~~~~~l~~-G~~l~~a~~~~~---~~~~~~aiGvNC-~~p~~~~~~l~~l~~ 265 (317)
+++=-.. +..+++-+ +....+....+. ...+...||=-| ++|.++..+-+.+++
T Consensus 236 iivYPNSGe~~d~~~k~w~~p~~~~~~~~~~a~~w~~~GA~iiGGCCrt~p~~I~ei~~~~~~ 298 (300)
T COG2040 236 IIVYPNSGEQYDPAGKTWHGPALSADSYSTLAKSWVEAGARIIGGCCRTGPAHIAEIAKALKK 298 (300)
T ss_pred eEEcCCcccccCcCCCcCCCCCCchhHHHHHHHHHHhcccceeeeccCCChHHHHHHHHHHhc
Confidence 8863321 22223333 333333322221 124788999999 589998777666654
No 470
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=33.53 E-value=3.5e+02 Score=24.19 Aligned_cols=96 Identities=18% Similarity=0.212 Sum_probs=50.9
Q ss_pred HHhCCCCEEEeccC--CCHHHHHHHHHHHHHhCCCccEEEEEEEcCC----Cc-------ccCCCcHHHHHHHhhcCCCc
Q 021144 177 LANSGADLIAFETI--PNKLEAKAYAELLEEEGITIPAWFSFNSKDG----IN-------VVSGDSILECASIADSCEQV 243 (317)
Q Consensus 177 l~~~gvD~l~~ET~--p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~----~~-------l~~G~~l~~a~~~~~~~~~~ 243 (317)
+.+.|+|.+.+-|. .+..-+. +++++.+ +-.+.+|+.++.+ ++ ..+..+..+.++.+.+ .++
T Consensus 89 ~l~~G~~~v~ig~~~~~~p~~~~---~i~~~~~-~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~-~G~ 163 (243)
T cd04731 89 LLRAGADKVSINSAAVENPELIR---EIAKRFG-SQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEE-LGA 163 (243)
T ss_pred HHHcCCceEEECchhhhChHHHH---HHHHHcC-CCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHH-CCC
Confidence 33368998877653 3443333 3344443 1247778877522 11 1123344455566654 466
Q ss_pred eEEEEcCCC-----hhhhHHHHHHHHhhCCCcEEEEeCCCC
Q 021144 244 VAVGINCTS-----PRFIHGLILSVRKVTSKPVIIYPNSGE 279 (317)
Q Consensus 244 ~aiGvNC~~-----p~~~~~~l~~l~~~~~~pl~vyPNaG~ 279 (317)
+.|-+-... +..-..+++.+.+.++.| ++.|+|.
T Consensus 164 d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~p--via~GGi 202 (243)
T cd04731 164 GEILLTSMDRDGTKKGYDLELIRAVSSAVNIP--VIASGGA 202 (243)
T ss_pred CEEEEeccCCCCCCCCCCHHHHHHHHhhCCCC--EEEeCCC
Confidence 766664322 122346677777777777 4556653
No 471
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=33.48 E-value=3.4e+02 Score=27.11 Aligned_cols=113 Identities=14% Similarity=0.027 Sum_probs=60.8
Q ss_pred CeEEEEeeCC-CcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEE-----Ee-ccCCCHHH-HHHHHHHHH
Q 021144 133 PVLVAASVGS-YGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLI-----AF-ETIPNKLE-AKAYAELLE 204 (317)
Q Consensus 133 ~~~VagsiGP-~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l-----~~-ET~p~~~E-a~a~~~~~~ 204 (317)
++++..-|=| .| ++.+++. +++..+..+|+|+| +. ..+.-++| ++++.++++
T Consensus 131 RPL~gtiiKP~~G----------------lsp~~~a----~~~y~~~~GGvD~iKDDE~l~~q~~~p~~~Rv~~~~~a~~ 190 (412)
T cd08213 131 RPLLGTVPKPKVG----------------LSPEEHA----EVAYEALVGGVDLVKDDENLTSQPFNRFEERAKESLKARD 190 (412)
T ss_pred CCeEEeecCcccC----------------CCHHHHH----HHHHHHHhcCCcccccCccCCCCCCCCHHHHHHHHHHHHH
Confidence 5566666777 44 3655544 45666777999988 22 23333333 445555554
Q ss_pred ----HhCCCccEEEEEEEcCCCcccCCCcHHHHH---HHhhcCCCceEEEEcCC--ChhhhHHHHHHHHhhCCCcEEEEe
Q 021144 205 ----EEGITIPAWFSFNSKDGINVVSGDSILECA---SIADSCEQVVAVGINCT--SPRFIHGLILSVRKVTSKPVIIYP 275 (317)
Q Consensus 205 ----~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~---~~~~~~~~~~aiGvNC~--~p~~~~~~l~~l~~~~~~pl~vyP 275 (317)
+++ .+.+-.+.+. |. ..+.. +.+.+ .+..++.+|.. +... ...|++.....+.||...|
T Consensus 191 ~a~~eTG--~~~~y~~NiT-------~~-~~em~~ra~~a~e-~G~~~~mv~~~~~G~~~-l~~l~~~~~~~~l~ihaHr 258 (412)
T cd08213 191 KAEAETG--ERKAYLANIT-------AP-VREMERRAELVAD-LGGKYVMIDVVVAGWSA-LQYLRDLAEDYGLAIHAHR 258 (412)
T ss_pred HHHHhhC--CcceEEEEec-------CC-HHHHHHHHHHHHH-hCCCeEEeeccccChHH-HHHHHHhccccCeEEEECC
Confidence 344 5566566553 22 33333 33333 46678888884 3332 2223332223467888877
Q ss_pred CC
Q 021144 276 NS 277 (317)
Q Consensus 276 Na 277 (317)
+.
T Consensus 259 a~ 260 (412)
T cd08213 259 AM 260 (412)
T ss_pred Cc
Confidence 75
No 472
>PRK00915 2-isopropylmalate synthase; Validated
Probab=33.30 E-value=5.4e+02 Score=26.29 Aligned_cols=66 Identities=20% Similarity=0.180 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhCCCCEEEe-ccCC--CHHHHHHHHHHHHHhCCC-ccEEEEEEEcCCCcccCCCcHHHHHHHh
Q 021144 168 EFHRRRVLILANSGADLIAF-ETIP--NKLEAKAYAELLEEEGIT-IPAWFSFNSKDGINVVSGDSILECASIA 237 (317)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~-ET~p--~~~Ea~a~~~~~~~~~~~-~pv~iSf~~~~~~~l~~G~~l~~a~~~~ 237 (317)
+|..+.++.+.+.|+|.|.+ -|+- ...++..+++.+++.-++ ..+.++|-|.++ .|..++.++..+
T Consensus 149 ~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND----~GlAvANslaAv 218 (513)
T PRK00915 149 DFLCRVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHND----LGLAVANSLAAV 218 (513)
T ss_pred HHHHHHHHHHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEecCC----CCHHHHHHHHHH
Confidence 34555666778899998855 3543 578888888888864211 127788888765 244444444444
No 473
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=33.27 E-value=2.5e+02 Score=26.90 Aligned_cols=63 Identities=16% Similarity=0.127 Sum_probs=34.4
Q ss_pred HHHHHHhCCCCEEEec--------c-------CCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHh
Q 021144 173 RVLILANSGADLIAFE--------T-------IPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA 237 (317)
Q Consensus 173 qi~~l~~~gvD~l~~E--------T-------~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~ 237 (317)
+++.+.++|||+|.+. | .|.+.-+..+.+++++. ++||+.+ |-+.++ .++++.+
T Consensus 148 ~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~--~vpVIA~------GGI~~~---~di~kAl 216 (325)
T cd00381 148 AARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDY--GVPVIAD------GGIRTS---GDIVKAL 216 (325)
T ss_pred HHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhc--CCcEEec------CCCCCH---HHHHHHH
Confidence 4556778999999862 1 23333333444444443 4888732 333344 4555555
Q ss_pred hcCCCceEEEE
Q 021144 238 DSCEQVVAVGI 248 (317)
Q Consensus 238 ~~~~~~~aiGv 248 (317)
. .+.+++.+
T Consensus 217 a--~GA~~Vmi 225 (325)
T cd00381 217 A--AGADAVML 225 (325)
T ss_pred H--cCCCEEEe
Confidence 4 36666665
No 474
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=32.95 E-value=4.4e+02 Score=25.06 Aligned_cols=72 Identities=19% Similarity=0.182 Sum_probs=40.8
Q ss_pred HHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCC----------CcccCCCcHHHHHHHh---hcCC
Q 021144 175 LILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDG----------INVVSGDSILECASIA---DSCE 241 (317)
Q Consensus 175 ~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~----------~~l~~G~~l~~a~~~~---~~~~ 241 (317)
+.+++.|+..+.++ ++.|++.+.+..++.+...++++-+..... ..-+-|.+.+++.+.+ ...
T Consensus 85 ~~~~~~~~~~~~vd---s~~el~~l~~~~~~~~~~~~v~lrin~g~~~~~~~~~~~~~~srfGi~~~e~~~~~~~~~~~- 160 (368)
T cd06810 85 EAALASGVDHIVVD---SLDELERLNELAKKLGPKARILLRVNPDVSAGTHKISTGGLKSKFGLSLSEARAALERAKEL- 160 (368)
T ss_pred HHHHHCCCCEEEeC---CHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcccCccCCCCCCcCCCHHHHHHHHHHHHhC-
Confidence 33445666556555 778888887777665544567766654321 1134687776654443 332
Q ss_pred CceEEEEcC
Q 021144 242 QVVAVGINC 250 (317)
Q Consensus 242 ~~~aiGvNC 250 (317)
++..+|+-|
T Consensus 161 ~l~l~Gl~~ 169 (368)
T cd06810 161 DLRLVGLHF 169 (368)
T ss_pred CCcEEEEEE
Confidence 255555543
No 475
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=32.93 E-value=5.4e+02 Score=26.15 Aligned_cols=67 Identities=12% Similarity=0.077 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhCCCCEEEeccCCC-HHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEE
Q 021144 169 FHRRRVLILANSGADLIAFETIPN-KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVG 247 (317)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~ET~p~-~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiG 247 (317)
...++++.|+++|+|.|++-+-.- -.-+...++.+|+..++.+++.. .. .+.+.+..+++ .++++|+
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~ag-------nv---~t~~~a~~l~~--aGad~v~ 294 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAG-------NV---VTAEGTRDLVE--AGADIVK 294 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEee-------cc---CCHHHHHHHHH--cCCCEEE
Confidence 455789999999999999985433 23344455566665556777741 11 23455555554 3566654
No 476
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.72 E-value=1.9e+02 Score=27.27 Aligned_cols=90 Identities=14% Similarity=0.060 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCce
Q 021144 165 TLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVV 244 (317)
Q Consensus 165 el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~ 244 (317)
+..+...+.++.|.+.|+++++.+......+... .. ..+...+.-++|++ +| |||-| .+++.+.. .++-
T Consensus 22 ~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~-~~-~~~~~~~~Dlvi~i----GG---DGT~L-~aa~~~~~-~~~P 90 (287)
T PRK14077 22 SLDKEILKLQKILSIYKVEILLEKESAEILDLPG-YG-LDELFKISDFLISL----GG---DGTLI-SLCRKAAE-YDKF 90 (287)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEecchhhhhcccc-cc-hhhcccCCCEEEEE----CC---CHHHH-HHHHHhcC-CCCc
Confidence 5556666666678788999988653211100000 00 01111113355555 33 66545 46655543 3666
Q ss_pred EEEEcCCC--------hhhhHHHHHHHHh
Q 021144 245 AVGINCTS--------PRFIHGLILSVRK 265 (317)
Q Consensus 245 aiGvNC~~--------p~~~~~~l~~l~~ 265 (317)
.+||||.. ++.+...|+.+.+
T Consensus 91 ilGIN~G~lGFLt~~~~~~~~~~l~~i~~ 119 (287)
T PRK14077 91 VLGIHAGHLGFLTDITVDEAEKFFQAFFQ 119 (287)
T ss_pred EEEEeCCCcccCCcCCHHHHHHHHHHHHc
Confidence 89999975 5666777776654
No 477
>PLN02235 ATP citrate (pro-S)-lyase
Probab=32.69 E-value=4.2e+02 Score=26.57 Aligned_cols=73 Identities=16% Similarity=0.120 Sum_probs=49.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-HhCCCCEEE---eccCCCHHHH----HHHHHHHHHhC-----CCccEEEEEEEcCCCc
Q 021144 157 YGDAVSLETLKEFHRRRVLIL-ANSGADLIA---FETIPNKLEA----KAYAELLEEEG-----ITIPAWFSFNSKDGIN 223 (317)
Q Consensus 157 y~~~~s~~el~~~h~~qi~~l-~~~gvD~l~---~ET~p~~~Ea----~a~~~~~~~~~-----~~~pv~iSf~~~~~~~ 223 (317)
|+...+.++.+++++-.+..+ .+.+|+.++ |--|.+.+++ +++++++++.. .++|+||-+
T Consensus 304 vGG~a~~e~v~~a~~iil~~~~~~~~vk~ilvnIfGGI~rcd~VA~tf~GIi~A~~e~~~kl~~~~vpivVRl------- 376 (423)
T PLN02235 304 YSGAPNEEEVLQYARVVIDCATANPDGRKRALLIGGGIANFTDVAATFNGIIRALREKESKLKAARMHIFVRR------- 376 (423)
T ss_pred cCCCCCHHHHHHHHHHHHhhhhcCCCCcEEEEEEecccccchhhhhhhhHHHHHHHHhhhccccCCccEEEEC-------
Confidence 333368889988886544322 356777664 4455554444 48999999864 358998755
Q ss_pred ccCCCcHHHHHHHhh
Q 021144 224 VVSGDSILECASIAD 238 (317)
Q Consensus 224 l~~G~~l~~a~~~~~ 238 (317)
.|+..++..+.++
T Consensus 377 --~GtN~eeG~~il~ 389 (423)
T PLN02235 377 --GGPNYQKGLAKMR 389 (423)
T ss_pred --CCCCHHHHHHHHH
Confidence 7999999888886
No 478
>PRK15447 putative protease; Provisional
Probab=32.58 E-value=3.1e+02 Score=25.88 Aligned_cols=46 Identities=24% Similarity=0.245 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEec-cC------CCHHHHHHHHHHHHHhCCCccEEEEE
Q 021144 165 TLKEFHRRRVLILANSGADLIAFE-TI------PNKLEAKAYAELLEEEGITIPAWFSF 216 (317)
Q Consensus 165 el~~~h~~qi~~l~~~gvD~l~~E-T~------p~~~Ea~a~~~~~~~~~~~~pv~iSf 216 (317)
.+.+||. .+.+.|||.|.+- .. .+.+|++.+++.+++.+ +++++++
T Consensus 16 ~~~~~~~----~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~g--kkvyva~ 68 (301)
T PRK15447 16 TVRDFYQ----RAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAG--KEVVLST 68 (301)
T ss_pred CHHHHHH----HHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcC--CEEEEEe
Confidence 3455554 4666899999885 22 46799999999999876 8888876
No 479
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=32.48 E-value=2.1e+02 Score=27.64 Aligned_cols=83 Identities=13% Similarity=0.206 Sum_probs=48.3
Q ss_pred HHHHHhCCCCEEEecc--------CC-CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhc---CC
Q 021144 174 VLILANSGADLIAFET--------IP-NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS---CE 241 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET--------~p-~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~---~~ 241 (317)
++..++.||+.|++-. .| +++-+..++.+++ ..+|||+ +|-.+.|+++-.|+..=.. -.
T Consensus 237 A~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~---~ri~V~l------DGGVR~G~DVlKALALGAk~VfiG 307 (363)
T KOG0538|consen 237 ARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVE---GRIPVFL------DGGVRRGTDVLKALALGAKGVFIG 307 (363)
T ss_pred HHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhc---CceEEEE------ecCcccchHHHHHHhcccceEEec
Confidence 4445678998887532 11 2222223333333 3588884 3445689887776654222 13
Q ss_pred CceEEEEcCCChhhhHHHHHHHHh
Q 021144 242 QVVAVGINCTSPRFIHGLILSVRK 265 (317)
Q Consensus 242 ~~~aiGvNC~~p~~~~~~l~~l~~ 265 (317)
.|..+|+-|-+-..+...|+.|+.
T Consensus 308 RP~v~gLA~~Ge~GV~~vl~iL~~ 331 (363)
T KOG0538|consen 308 RPIVWGLAAKGEAGVKKVLDILRD 331 (363)
T ss_pred CchheeeccccchhHHHHHHHHHH
Confidence 577899999866666666665554
No 480
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=32.39 E-value=4.5e+02 Score=25.45 Aligned_cols=40 Identities=18% Similarity=0.134 Sum_probs=25.6
Q ss_pred HHHHHhCCCCEEEeccCCCHHHHHHHHHHHHH-hCCCccEEEEEE
Q 021144 174 VLILANSGADLIAFETIPNKLEAKAYAELLEE-EGITIPAWFSFN 217 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~-~~~~~pv~iSf~ 217 (317)
++..++.|| .|.++ +..|++-+.+.+++ .+...++.+-+.
T Consensus 86 L~~ai~~gv-~i~iD---S~~El~~i~~~a~~~~~~~~~v~lRvn 126 (379)
T cd06836 86 LREALELGV-AINID---NFQELERIDALVAEFKEASSRIGLRVN 126 (379)
T ss_pred HHHHHHCCC-EEEEC---CHHHHHHHHHHHHHhcCCCceEEEEEC
Confidence 344556788 66666 68888888877765 333355666654
No 481
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.33 E-value=3.7e+02 Score=24.03 Aligned_cols=82 Identities=11% Similarity=0.183 Sum_probs=49.0
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEc---
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGIN--- 249 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvN--- 249 (317)
|++...++|+++++= |.+.+ .+++.+++.+ +|++ +.-.++.|+....+. +.+.|=+-
T Consensus 68 ~a~~ai~aGA~FivS---P~~~~--~vi~~a~~~~--i~~i-----------PG~~TptEi~~A~~~--Ga~~vK~FPa~ 127 (201)
T PRK06015 68 QFEDAAKAGSRFIVS---PGTTQ--ELLAAANDSD--VPLL-----------PGAATPSEVMALREE--GYTVLKFFPAE 127 (201)
T ss_pred HHHHHHHcCCCEEEC---CCCCH--HHHHHHHHcC--CCEe-----------CCCCCHHHHHHHHHC--CCCEEEECCch
Confidence 566677799999983 44433 5666677755 7777 233678888887763 54554443
Q ss_pred CC-ChhhhHHHHHHHHhhC-CCcEEEEeCCCCc
Q 021144 250 CT-SPRFIHGLILSVRKVT-SKPVIIYPNSGET 280 (317)
Q Consensus 250 C~-~p~~~~~~l~~l~~~~-~~pl~vyPNaG~~ 280 (317)
.. +|.+ ++.++... +.| ++|-+|-.
T Consensus 128 ~~GG~~y----ikal~~plp~~~--l~ptGGV~ 154 (201)
T PRK06015 128 QAGGAAF----LKALSSPLAGTF--FCPTGGIS 154 (201)
T ss_pred hhCCHHH----HHHHHhhCCCCc--EEecCCCC
Confidence 33 3554 44444332 334 44877753
No 482
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=32.26 E-value=3.6e+02 Score=26.36 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=20.0
Q ss_pred CChHHHHHHHHHHHHhhccccccc
Q 021144 52 SSPHLVRKVHLDYLDAGANIIITA 75 (317)
Q Consensus 52 ~~Pe~V~~iH~~Yl~AGAdiI~Tn 75 (317)
-+|+...++-.+++.+|.|+|.-.
T Consensus 138 L~~~~~a~~~~~~~~gGvD~IKdD 161 (364)
T cd08210 138 LSAAELAELAYAFALGGIDIIKDD 161 (364)
T ss_pred CCHHHHHHHHHHHHhcCCCeeecC
Confidence 367889999999999999999543
No 483
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=32.21 E-value=4.7e+02 Score=25.21 Aligned_cols=114 Identities=23% Similarity=0.277 Sum_probs=62.2
Q ss_pred CCCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCC--CCEEEeccCCCHHHHHHHHHHHHHhCC
Q 021144 131 SRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSG--ADLIAFETIPNKLEAKAYAELLEEEGI 208 (317)
Q Consensus 131 ~~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~g--vD~l~~ET~p~~~Ea~a~~~~~~~~~~ 208 (317)
+.++||.+++++-|. +.+| -+.++... +++.+ +=.|-+...+-......+.++. +...
T Consensus 189 ~~p~~is~t~~d~g~-l~~G----------~t~e~~~~--------~~~~~~~~~~IGvNC~~~~~~~~~~~~L~-~~~~ 248 (317)
T KOG1579|consen 189 SKPFWISFTIKDEGR-LRSG----------ETGEEAAQ--------LLKDGINLLGIGVNCVSPNFVEPLLKELM-AKLT 248 (317)
T ss_pred CCcEEEEEEecCCCc-ccCC----------CcHHHHHH--------HhccCCceEEEEeccCCchhccHHHHHHh-hccC
Confidence 468999999999554 4432 25555443 44455 3444445444444445555555 3334
Q ss_pred CccEEEEEEE---cC--CC-cccC--C-CcHHHHHHHhhcCCCceEEEEcC-CChhhhHHHHHHHHh
Q 021144 209 TIPAWFSFNS---KD--GI-NVVS--G-DSILECASIADSCEQVVAVGINC-TSPRFIHGLILSVRK 265 (317)
Q Consensus 209 ~~pv~iSf~~---~~--~~-~l~~--G-~~l~~a~~~~~~~~~~~aiGvNC-~~p~~~~~~l~~l~~ 265 (317)
+.|+++--.- .+ .+ -+.. | .++...+....+ .++-.||--| +.|.++..+-+.+++
T Consensus 249 ~~~llvYPNsGe~yd~~~g~~~~~~~~~~~~~~~~~~~~~-lGv~iIGGCCrt~P~~I~aI~e~v~~ 314 (317)
T KOG1579|consen 249 KIPLLVYPNSGEVYDNEKGGWIPTPFGLEPWQTYVKKAID-LGVRIIGGCCRTTPKHIRAIAEAVKK 314 (317)
T ss_pred CCeEEEecCCCCCCccccCcccCCCcccchHHHHHHHHHh-cccceeCcccCCChHHHHHHHHHhhc
Confidence 5777752211 11 11 1111 1 123344444444 4888999999 489998877666654
No 484
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=32.16 E-value=1.1e+02 Score=27.39 Aligned_cols=51 Identities=22% Similarity=0.331 Sum_probs=37.4
Q ss_pred CcHHHHHHHhhcCCCceEEEEcCC---ChhhhHHHHHHHHhhCCCcEEEEeCCCC
Q 021144 228 DSILECASIADSCEQVVAVGINCT---SPRFIHGLILSVRKVTSKPVIIYPNSGE 279 (317)
Q Consensus 228 ~~l~~a~~~~~~~~~~~aiGvNC~---~p~~~~~~l~~l~~~~~~pl~vyPNaG~ 279 (317)
+.+.+.+..+.+ .+.++|-|--+ ..+.+.++++.+++.+++|+++.|-...
T Consensus 11 e~~~~ia~~v~~-~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvilfp~~~~ 64 (205)
T TIGR01769 11 DEIEKIAKNAKD-AGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVILFPGNVN 64 (205)
T ss_pred HHHHHHHHHHHh-cCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEEECCCcc
Confidence 344555555554 46788777644 3688999999999988999999998764
No 485
>PRK00915 2-isopropylmalate synthase; Validated
Probab=32.08 E-value=5.7e+02 Score=26.15 Aligned_cols=98 Identities=14% Similarity=0.029 Sum_probs=56.4
Q ss_pred HHHHHHhCCCCEEEecc-CCCH----------H----HHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHh
Q 021144 173 RVLILANSGADLIAFET-IPNK----------L----EAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA 237 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET-~p~~----------~----Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~ 237 (317)
.++++.++|++.+.+-. .+++ + .+..+++.+++.+ . .+.|++++..+. +=.-+.++++.+
T Consensus 84 a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g--~--~v~f~~ed~~r~-d~~~l~~~~~~~ 158 (513)
T PRK00915 84 AAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYT--D--DVEFSAEDATRT-DLDFLCRVVEAA 158 (513)
T ss_pred HHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC--C--eEEEEeCCCCCC-CHHHHHHHHHHH
Confidence 45566677887664432 2222 1 2334556666655 2 357888776543 222233444444
Q ss_pred hcCCCceEEEEcCC----ChhhhHHHHHHHHhhCC----CcEEEEeC
Q 021144 238 DSCEQVVAVGINCT----SPRFIHGLILSVRKVTS----KPVIIYPN 276 (317)
Q Consensus 238 ~~~~~~~aiGvNC~----~p~~~~~~l~~l~~~~~----~pl~vyPN 276 (317)
.+ .+++.|.+-=| .|..+..+++.+++..+ .||.+...
T Consensus 159 ~~-~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~H 204 (513)
T PRK00915 159 ID-AGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCH 204 (513)
T ss_pred HH-cCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEec
Confidence 44 36665554333 38999999999987654 67777664
No 486
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=32.02 E-value=97 Score=33.76 Aligned_cols=65 Identities=17% Similarity=0.286 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhCCCCEEEeccCCCHHHHHH---HHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhh
Q 021144 167 KEFHRRRVLILANSGADLIAFETIPNKLEAKA---YAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (317)
Q Consensus 167 ~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a---~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~ 238 (317)
.+||...++.|.++|+-+|.+--|.-+.-=.| ++.++|+.- ++|+-+.- +=.+|..+...+..+.
T Consensus 693 L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~-dlPIHlHT------HDTsG~~~at~~aA~~ 760 (1149)
T COG1038 693 LDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETV-DLPIHLHT------HDTSGNGVATYLAAVE 760 (1149)
T ss_pred HHHHHHHHHHHHhcCCcEEEehhhhhccCHHHHHHHHHHHHHhc-CCceEEec------cCCCccHHHHHHHHHH
Confidence 47899999999999999999998876654444 455566654 78876443 1126776766655554
No 487
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=31.77 E-value=4.5e+02 Score=25.36 Aligned_cols=91 Identities=13% Similarity=0.035 Sum_probs=53.3
Q ss_pred HHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCC
Q 021144 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT 251 (317)
Q Consensus 172 ~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~ 251 (317)
+.++++.+.|-=.++.- + +.++...-+ ++.+ +...++...+.. ....++++.+.++...++++|-|.|+
T Consensus 52 ~LA~~a~~~G~~~~~~k-~-~~e~~~~~~---r~~~-~~~l~v~~~vg~-----~~~~~~~~~~Lv~ag~~~d~i~iD~a 120 (326)
T PRK05458 52 KIAEWLAENGYFYIMHR-F-DPEARIPFI---KDMH-EQGLIASISVGV-----KDDEYDFVDQLAAEGLTPEYITIDIA 120 (326)
T ss_pred HHHHHHHHcCCEEEEec-C-CHHHHHHHH---Hhcc-ccccEEEEEecC-----CHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 34555556676666767 3 565544444 4432 223344444321 12345666666664335599999998
Q ss_pred Ch--hhhHHHHHHHHhhCC-CcEEE
Q 021144 252 SP--RFIHGLILSVRKVTS-KPVII 273 (317)
Q Consensus 252 ~p--~~~~~~l~~l~~~~~-~pl~v 273 (317)
++ ..+..+++++++..+ .|+++
T Consensus 121 ~gh~~~~~e~I~~ir~~~p~~~vi~ 145 (326)
T PRK05458 121 HGHSDSVINMIQHIKKHLPETFVIA 145 (326)
T ss_pred CCchHHHHHHHHHHHhhCCCCeEEE
Confidence 65 678888999988764 44443
No 488
>KOG2323 consensus Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=31.69 E-value=1.1e+02 Score=31.26 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=62.1
Q ss_pred HHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCc-eEEEEcCC
Q 021144 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQV-VAVGINCT 251 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~-~aiGvNC~ 251 (317)
-++.=++.+||++..=++.+...++.+.+++.+.+.+.+++...-..... ..+.+++..-+.-+-+ -=+|++|.
T Consensus 199 dl~fGven~vd~i~~SfIR~a~dv~~iR~~Lg~~g~~ikiisKIEn~~g~-----~nfDeIl~~sDg~MvarGdlGieip 273 (501)
T KOG2323|consen 199 DLKFGVENKVDMIFASFIRKASDVREVRKVLGESGKNIKLISKIENQEGV-----SNFDEILIESDGIMVARGDLGIEIP 273 (501)
T ss_pred HHhcCCCCCCCEEEeeeeeehHHHHHHHHHhCccCCcceEEEEechhhhh-----ccHHHHHHhcCceEEEeCCCCcccC
Confidence 35555778999999999999999999999999777778888877544321 2255555433211000 12679997
Q ss_pred ChhhhHHHHHHHHh--hCCCcEEEEeC
Q 021144 252 SPRFIHGLILSVRK--VTSKPVIIYPN 276 (317)
Q Consensus 252 ~p~~~~~~l~~l~~--~~~~pl~vyPN 276 (317)
..+.....-.-+.+ ..++|+++-++
T Consensus 274 ~e~vflaQK~~I~kcn~~gKPVI~atq 300 (501)
T KOG2323|consen 274 AEKVFLAQKMMIYKCNSAGKPVICATQ 300 (501)
T ss_pred HHHHHHHHHHHHHHhcccCCCEEEehh
Confidence 54332222223333 34699887664
No 489
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=31.17 E-value=2.2e+02 Score=27.97 Aligned_cols=65 Identities=12% Similarity=0.147 Sum_probs=38.1
Q ss_pred HHHHHHHHHhCCCCEEEec-----cCC--CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCC
Q 021144 170 HRRRVLILANSGADLIAFE-----TIP--NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQ 242 (317)
Q Consensus 170 h~~qi~~l~~~gvD~l~~E-----T~p--~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~ 242 (317)
+.++++.+.++|||+|.+- +.. +......+.+.+++. ++||++. +-.+.+++.+.++ .+
T Consensus 143 ~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIaG----------~V~t~e~A~~l~~--aG 208 (368)
T PRK08649 143 AQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIVG----------GCVTYTTALHLMR--TG 208 (368)
T ss_pred HHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEEe----------CCCCHHHHHHHHH--cC
Confidence 4568889999999999882 221 000123355556654 4898751 1234556665554 46
Q ss_pred ceEEEE
Q 021144 243 VVAVGI 248 (317)
Q Consensus 243 ~~aiGv 248 (317)
+++|-+
T Consensus 209 AD~V~V 214 (368)
T PRK08649 209 AAGVLV 214 (368)
T ss_pred CCEEEE
Confidence 666533
No 490
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=31.10 E-value=4.2e+02 Score=24.35 Aligned_cols=91 Identities=12% Similarity=0.107 Sum_probs=47.7
Q ss_pred HHHHHHHHhCCCCEEEeccCC----CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEE
Q 021144 171 RRRVLILANSGADLIAFETIP----NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAV 246 (317)
Q Consensus 171 ~~qi~~l~~~gvD~l~~ET~p----~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~ai 246 (317)
.++++.+++.|+|+|=+-.-| ..+|++-++..+++.. +.| +|+ |....+-+.+.++...++.
T Consensus 29 ~~~A~~~~~~GAdiIDIG~~~~~~~~~ee~~r~v~~i~~~~-~~p--iSI---------DT~~~~v~e~aL~~~~G~~-- 94 (252)
T cd00740 29 LDVARQQVEGGAQILDLNVDYGGLDGVSAMKWLLNLLATEP-TVP--LML---------DSTNWEVIEAGLKCCQGKC-- 94 (252)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCc--EEe---------eCCcHHHHHHHHhhCCCCc--
Confidence 346777788999999665533 3555556666677643 456 344 2223332222333211322
Q ss_pred EEcCCCh----hhhHHHHHHHHhhCCCcEEEEeC
Q 021144 247 GINCTSP----RFIHGLILSVRKVTSKPVIIYPN 276 (317)
Q Consensus 247 GvNC~~p----~~~~~~l~~l~~~~~~pl~vyPN 276 (317)
-||=.+. +.+..+++.+++ .+.|+++.++
T Consensus 95 iINsIs~~~~~e~~~~~~~~~~~-~~~~vV~m~~ 127 (252)
T cd00740 95 VVNSINLEDGEERFLKVARLAKE-HGAAVVVLAF 127 (252)
T ss_pred EEEeCCCCCCccccHHHHHHHHH-hCCCEEEecc
Confidence 3454321 234445554444 3578888887
No 491
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=30.74 E-value=4.6e+02 Score=25.19 Aligned_cols=55 Identities=16% Similarity=0.144 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEec-c-CCC-HHH-HHHHHHHHHHh--CCCccEEEEEEE
Q 021144 164 ETLKEFHRRRVLILANSGADLIAFE-T-IPN-KLE-AKAYAELLEEE--GITIPAWFSFNS 218 (317)
Q Consensus 164 ~el~~~h~~qi~~l~~~gvD~l~~E-T-~p~-~~E-a~a~~~~~~~~--~~~~pv~iSf~~ 218 (317)
.++.+.+++-++.|.++|++.|=+- . +.. ..+ +...++++... +.+.++++.+++
T Consensus 152 ~dlA~al~~Ei~~L~~aG~~~IQiDeP~l~~~~~~~~~~~v~~~n~~~~g~~~~v~~HvC~ 212 (339)
T PRK09121 152 WEFAKILNQEAKELEAAGVDIIQFDEPAFNVFFDEVNDWGVAALERAIEGLKCETAVHICY 212 (339)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEecccHHhhhhHHHHHHHHHHHHHHHcCCCCceEEEEeC
Confidence 4577889999999999999977543 2 111 122 44455555443 223556665544
No 492
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=30.64 E-value=4.1e+02 Score=24.04 Aligned_cols=65 Identities=9% Similarity=0.029 Sum_probs=35.3
Q ss_pred HHHHHhCCCCEEEeccCCC-----HHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEE
Q 021144 174 VLILANSGADLIAFETIPN-----KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (317)
Q Consensus 174 i~~l~~~gvD~l~~ET~p~-----~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGv 248 (317)
++.+.+.|+|.|++-++.. --....+-++.+.. +.|++++--+ .+++++.+.+.. .+++++-+
T Consensus 159 ~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~--~ipvia~GGv---------~s~~d~~~~~~~-~G~~gviv 226 (253)
T PRK02083 159 AKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSDAV--NVPVIASGGA---------GNLEHFVEAFTE-GGADAALA 226 (253)
T ss_pred HHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhC--CCCEEEECCC---------CCHHHHHHHHHh-CCccEEeE
Confidence 4456678999887744332 11122222323332 4899987622 345666665543 46666655
Q ss_pred cC
Q 021144 249 NC 250 (317)
Q Consensus 249 NC 250 (317)
.=
T Consensus 227 g~ 228 (253)
T PRK02083 227 AS 228 (253)
T ss_pred hH
Confidence 44
No 493
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=30.63 E-value=3.7e+02 Score=23.82 Aligned_cols=94 Identities=14% Similarity=0.091 Sum_probs=47.5
Q ss_pred HHHHHHhCCCCEEEec--c-------CCCHHHHHHHHHHHHHhCC-CccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCC
Q 021144 173 RVLILANSGADLIAFE--T-------IPNKLEAKAYAELLEEEGI-TIPAWFSFNSKDGINVVSGDSILECASIADSCEQ 242 (317)
Q Consensus 173 qi~~l~~~gvD~l~~E--T-------~p~~~Ea~a~~~~~~~~~~-~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~ 242 (317)
+++.+.+.|+|+|=+- + ++.-+|++.++.+++.... ...+.+|+-. ...+ +++.+... +
T Consensus 24 ~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT---------~~~~-v~~~aL~~-g 92 (210)
T PF00809_consen 24 RAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDT---------FNPE-VAEAALKA-G 92 (210)
T ss_dssp HHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEE---------SSHH-HHHHHHHH-T
T ss_pred HHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEEC---------CCHH-HHHHHHHc-C
Confidence 4778888999999654 2 3345666666666655321 0234555522 1222 22222222 3
Q ss_pred ceEEEEcCCChhhhHHHHHHHHhhCCCcEEEEeCCCC
Q 021144 243 VVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGE 279 (317)
Q Consensus 243 ~~aiGvNC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~ 279 (317)
... -.|=++-+.....++.++++ +.|++++++.|.
T Consensus 93 ~~~-ind~~~~~~~~~~~~l~a~~-~~~vV~m~~~~~ 127 (210)
T PF00809_consen 93 ADI-INDISGFEDDPEMLPLAAEY-GAPVVLMHSDGN 127 (210)
T ss_dssp SSE-EEETTTTSSSTTHHHHHHHH-TSEEEEESESSE
T ss_pred cce-EEecccccccchhhhhhhcC-CCEEEEEecccc
Confidence 332 23333322133334434443 679999999964
No 494
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=30.53 E-value=4.8e+02 Score=24.80 Aligned_cols=106 Identities=19% Similarity=0.188 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEec-cCC---------------CHHHHHHHHHHHHHhCCCccEEEEEEEcCCCccc
Q 021144 162 SLETLKEFHRRRVLILANSGADLIAFE-TIP---------------NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVV 225 (317)
Q Consensus 162 s~~el~~~h~~qi~~l~~~gvD~l~~E-T~p---------------~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~ 225 (317)
+.+++.+ -++.+.+.|+|.|=+- -.| +.+.+..+++++++.- ++|+.+-+.. |...
T Consensus 75 ~~~~~~~----aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~-d~pv~vKiR~---G~~~ 146 (321)
T PRK10415 75 DPKEMAD----AARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV-DVPVTLKIRT---GWAP 146 (321)
T ss_pred CHHHHHH----HHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc-CCceEEEEEc---cccC
Confidence 4455533 3444556788887332 223 3566777788877653 5787766652 2111
Q ss_pred CCCcHHHHHHHhhcCCCceEEEEcCCC-h-----hhhHHHHHHHHhhCCCcEEEEeCCC
Q 021144 226 SGDSILECASIADSCEQVVAVGINCTS-P-----RFIHGLILSVRKVTSKPVIIYPNSG 278 (317)
Q Consensus 226 ~G~~l~~a~~~~~~~~~~~aiGvNC~~-p-----~~~~~~l~~l~~~~~~pl~vyPNaG 278 (317)
+.....+.++.+.+ .++++|-+.+-. + ..-...++++++.++.|++ .|+|
T Consensus 147 ~~~~~~~~a~~le~-~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI--~nGg 202 (321)
T PRK10415 147 EHRNCVEIAQLAED-CGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVI--ANGD 202 (321)
T ss_pred CcchHHHHHHHHHH-hCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEE--EeCC
Confidence 22345566666654 477777666531 1 1123577788887788854 4666
No 495
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=30.26 E-value=3.1e+02 Score=22.57 Aligned_cols=28 Identities=18% Similarity=0.137 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhhccccccccccccHH
Q 021144 55 HLVRKVHLDYLDAGANIIITASYQATIQ 82 (317)
Q Consensus 55 e~V~~iH~~Yl~AGAdiI~TnTy~as~~ 82 (317)
+...+.++.+.+.|+++|.+-+...++.
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~ 39 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPE 39 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcc
Confidence 5667788889999999999888776654
No 496
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=30.20 E-value=5.4e+02 Score=25.27 Aligned_cols=113 Identities=17% Similarity=0.133 Sum_probs=62.0
Q ss_pred CeEEEEeeCCC-cCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEE-----Ee-ccCCCHHH-HHHHHHHHH
Q 021144 133 PVLVAASVGSY-GAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLI-----AF-ETIPNKLE-AKAYAELLE 204 (317)
Q Consensus 133 ~~~VagsiGP~-g~~l~~gseY~g~y~~~~s~~el~~~h~~qi~~l~~~gvD~l-----~~-ET~p~~~E-a~a~~~~~~ 204 (317)
++++...+=|. | ++.++ |.+++..+..+|+|+| +. ..+.-++| ++++.++++
T Consensus 127 RPl~gtiiKP~~G----------------lsp~~----~a~~~y~~~~GG~D~IKDDE~l~~q~~~p~~eRv~~~~~a~~ 186 (366)
T cd08148 127 RPLVGTIIKPKLG----------------LNPKY----TAEAAYAAALGGLDLIKDDETLTDQPFCPLRDRITEVAAALD 186 (366)
T ss_pred CceeEeecccccC----------------CCHHH----HHHHHHHHHhCCCCccccccccCCCCCCcHHHHHHHHHHHHH
Confidence 55666667774 4 35555 4445666778999987 22 22323333 444455544
Q ss_pred ----HhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEcCC--ChhhhHHHHHHHHhh--CCCcEEEEeC
Q 021144 205 ----EEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT--SPRFIHGLILSVRKV--TSKPVIIYPN 276 (317)
Q Consensus 205 ----~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvNC~--~p~~~~~~l~~l~~~--~~~pl~vyPN 276 (317)
+++ .+.+-++.+..+ -..+.+=++.+.+ .+..++.||.. +... ++.+++. .+.||...|+
T Consensus 187 ~a~~eTG--~~~~y~~NiT~~-----~~em~~ra~~~~~-~G~~~~mv~~~~~G~~~----l~~l~~~~~~~l~IhaHrA 254 (366)
T cd08148 187 RVQEETG--EKKLYAVNVTAG-----TFEIIERAERALE-LGANMLMVDVLTAGFSA----LQALAEDFEIDLPIHVHRA 254 (366)
T ss_pred HHHHhhC--CcceEEEEccCC-----HHHHHHHHHHHHH-hCCCEEEEeccccchHH----HHHHHHhCcCCcEEEeccc
Confidence 445 455556655321 1223333334433 46778888884 3333 4444442 4678888887
Q ss_pred C
Q 021144 277 S 277 (317)
Q Consensus 277 a 277 (317)
.
T Consensus 255 ~ 255 (366)
T cd08148 255 M 255 (366)
T ss_pred c
Confidence 5
No 497
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=30.17 E-value=3.9e+02 Score=25.05 Aligned_cols=69 Identities=16% Similarity=0.150 Sum_probs=48.3
Q ss_pred HHHHHHHHH-HHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEE--EEcCCCcccCCCcHHHHHHHh
Q 021144 168 EFHRRRVLI-LANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSF--NSKDGINVVSGDSILECASIA 237 (317)
Q Consensus 168 ~~h~~qi~~-l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf--~~~~~~~l~~G~~l~~a~~~~ 237 (317)
++.+.|+++ |.+-+||.+=.-.+++.+-++.+.+.+++.+. .|+++-- .++.+..|.+.+.++...+.+
T Consensus 58 ~~v~~Ql~av~~D~~v~avKtGML~~~eiie~va~~l~~~~~-~~vV~DPVmvaksG~~Ll~~~a~~~l~~~L 129 (263)
T COG0351 58 EFVEAQLDAVFSDIPVDAVKTGMLGSAEIIEVVAEKLKKYGI-GPVVLDPVMVAKSGDPLLDEEAVEALREEL 129 (263)
T ss_pred HHHHHHHHHHhhcCCCCEEEECCcCCHHHHHHHHHHHHhcCC-CcEEECceEEEcCCCcccChHHHHHHHHHh
Confidence 467779887 57789999999999999999999999998763 4444422 234455566655555444344
No 498
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=30.17 E-value=2.2e+02 Score=25.38 Aligned_cols=86 Identities=19% Similarity=0.118 Sum_probs=55.1
Q ss_pred HHHHHHhCCCCEEEeccCCCHH----HHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHH---HhhcCCCceE
Q 021144 173 RVLILANSGADLIAFETIPNKL----EAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECAS---IADSCEQVVA 245 (317)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~----Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~---~~~~~~~~~a 245 (317)
.++.+.+ .||.+=+-|---.. .+..+++.+++.+ +|+++-+-+.|- |.+....++ ... ..++++
T Consensus 18 i~~~~~~-~v~~iKvG~~l~~~~G~~~l~~~i~~l~~~~--~~I~~D~K~~Di-----g~t~~~~~~~~~~~~-~~gaD~ 88 (226)
T PF00215_consen 18 IADELGD-YVDIIKVGTPLFLAYGLEALPEIIEELKERG--KPIFLDLKLGDI-----GNTVARYAEAGFAAF-ELGADA 88 (226)
T ss_dssp HHHHHGG-GSSEEEEEHHHHHHHCHHHHHHHHHHHHHTT--SEEEEEEEE-SS-----HHHHHHHHHSCHHHH-TTTESE
T ss_pred HHHHhcC-cceEEEEChHHHhcCChhhHHHHHHHHHHhc--CCEeeeeeeccc-----chHHHHHHHHhhhhh-cCCCcE
Confidence 3444444 68887443322222 3377788888876 899998877653 334444553 223 368999
Q ss_pred EEEcCC-ChhhhHHHHHHHHhhC
Q 021144 246 VGINCT-SPRFIHGLILSVRKVT 267 (317)
Q Consensus 246 iGvNC~-~p~~~~~~l~~l~~~~ 267 (317)
+-++|. +++.+.++++..++..
T Consensus 89 vTv~~~~G~~tl~~~~~~a~~~~ 111 (226)
T PF00215_consen 89 VTVHPFAGDDTLEAAVKAAKKHG 111 (226)
T ss_dssp EEEEGTTHHHHHHHHHHHHHHTT
T ss_pred EEEeccCCHHHHHHHHHHHhccC
Confidence 999998 5677788888777653
No 499
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=29.97 E-value=2.5e+02 Score=25.26 Aligned_cols=64 Identities=19% Similarity=0.082 Sum_probs=43.1
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHH---HhhcCCCceEEEEcCC
Q 021144 187 FETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECAS---IADSCEQVVAVGINCT 251 (317)
Q Consensus 187 ~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~---~~~~~~~~~aiGvNC~ 251 (317)
..++.+...++++-+++++.+...+||+.+.+.+ +.-+.|.+..++.. .+...+++...|+-|.
T Consensus 98 ~~~vds~~~~~~l~~~a~~~~~~~~V~l~vdtg~-gm~R~G~~~~e~~~~~~~i~~~~~l~l~Gl~th 164 (229)
T TIGR00044 98 VHTIDSLKIAKKLNEQREKLQPPLNVLLQINISD-EESKSGIQPEELLELAIQIEELKHLKLRGLMTI 164 (229)
T ss_pred EEEECCHHHHHHHHHHHHhcCCCceEEEEEECCC-CCCCCCCCHHHHHHHHHHHhcCCCCeEEEEEEe
Confidence 4688899888888887776654456777765431 34456887655444 3444567888999985
No 500
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=29.94 E-value=2.9e+02 Score=26.18 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=14.2
Q ss_pred ccCCCcHHHHHHHhhcCCCceEEEEcCC
Q 021144 224 VVSGDSILECASIADSCEQVVAVGINCT 251 (317)
Q Consensus 224 l~~G~~l~~a~~~~~~~~~~~aiGvNC~ 251 (317)
+.-|+++.|.+..+.. . +++|.+-+.
T Consensus 78 ~~kgEsl~Dt~~vls~-y-~D~iv~R~~ 103 (304)
T TIGR00658 78 LGRGESIKDTARVLSR-Y-VDGIMARVY 103 (304)
T ss_pred CCCCCCHHHHHHHHHH-h-CCEEEEECC
Confidence 4456666666665543 2 455555543
Done!