Query 021145
Match_columns 317
No_of_seqs 116 out of 1537
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 07:57:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021145.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021145hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00907 2A0304 amino acid pe 100.0 3.5E-40 7.7E-45 316.2 29.0 286 10-306 196-482 (482)
2 KOG1289 Amino acid transporter 100.0 4.4E-40 9.4E-45 303.9 22.8 293 9-313 231-524 (550)
3 PRK15049 L-asparagine permease 100.0 1.6E-35 3.5E-40 284.2 25.0 252 27-300 214-470 (499)
4 TIGR03428 ureacarb_perm permea 100.0 4.1E-34 8.8E-39 273.6 28.2 250 32-292 212-472 (475)
5 TIGR03813 put_Glu_GABA_T putat 100.0 1.3E-34 2.8E-39 277.1 23.4 261 41-313 202-471 (474)
6 TIGR00913 2A0310 amino acid pe 100.0 2.5E-34 5.4E-39 275.6 22.8 249 13-275 175-439 (478)
7 TIGR00908 2A0305 ethanolamine 100.0 8.5E-34 1.8E-38 269.3 24.2 254 24-305 181-436 (442)
8 TIGR00910 2A0307_GadC glutamat 100.0 1.4E-33 3.1E-38 271.0 23.2 260 35-305 196-467 (507)
9 PRK10249 phenylalanine transpo 100.0 3.6E-33 7.9E-38 265.7 24.8 245 32-299 208-456 (458)
10 PRK11357 frlA putative fructos 100.0 4.2E-33 9E-38 264.8 22.9 246 32-303 194-439 (445)
11 PRK11387 S-methylmethionine tr 100.0 4.9E-33 1.1E-37 265.9 22.6 253 26-301 198-458 (471)
12 PRK10836 lysine transporter; P 100.0 7.6E-33 1.6E-37 265.7 24.0 221 33-264 205-435 (489)
13 PRK11049 D-alanine/D-serine/gl 100.0 6E-33 1.3E-37 265.1 22.7 229 23-267 200-435 (469)
14 TIGR00906 2A0303 cationic amin 100.0 1.1E-32 2.5E-37 267.1 23.4 246 26-304 223-556 (557)
15 PRK10746 putative transport pr 100.0 1.6E-32 3.6E-37 261.2 22.8 263 14-302 183-452 (461)
16 PRK10580 proY putative proline 100.0 3.1E-32 6.8E-37 259.5 24.5 251 26-300 192-448 (457)
17 PRK10238 aromatic amino acid t 100.0 2.1E-32 4.6E-37 260.3 23.1 228 24-267 190-422 (456)
18 TIGR01773 GABAperm gamma-amino 100.0 5.9E-32 1.3E-36 257.4 24.1 262 15-301 185-451 (452)
19 PRK10655 potE putrescine trans 100.0 6.8E-32 1.5E-36 256.0 22.1 241 33-303 189-432 (438)
20 PRK10197 gamma-aminobutyrate t 100.0 3.1E-31 6.6E-36 251.7 25.9 222 32-268 180-405 (446)
21 PRK10644 arginine:agmatin anti 100.0 4.1E-31 8.8E-36 251.1 24.5 212 32-262 190-403 (445)
22 PRK10435 cadB lysine/cadaverin 100.0 2E-31 4.3E-36 252.4 22.2 243 31-309 185-434 (435)
23 COG1113 AnsP Gamma-aminobutyra 100.0 3.7E-32 8E-37 247.2 15.7 266 13-304 185-455 (462)
24 TIGR00909 2A0306 amino acid tr 100.0 5.1E-31 1.1E-35 249.4 22.2 234 32-297 194-428 (429)
25 COG0833 LysP Amino acid transp 100.0 6.2E-31 1.3E-35 243.8 21.7 256 3-272 207-472 (541)
26 KOG1287 Amino acid transporter 100.0 1E-30 2.2E-35 241.4 20.0 205 31-255 202-407 (479)
27 TIGR00905 2A0302 transporter, 100.0 3.7E-30 8.1E-35 246.2 22.8 244 30-302 196-439 (473)
28 PRK15238 inner membrane transp 100.0 6.6E-30 1.4E-34 245.8 21.9 267 27-304 206-493 (496)
29 TIGR00911 2A0308 L-type amino 100.0 8.9E-30 1.9E-34 245.3 20.5 199 31-249 233-432 (501)
30 PRK11021 putative transporter; 100.0 1.4E-29 3.1E-34 238.1 21.1 204 33-262 177-380 (410)
31 TIGR03810 arg_ornith_anti argi 100.0 7.3E-29 1.6E-33 237.0 23.5 217 28-264 190-408 (468)
32 KOG1286 Amino acid transporter 100.0 7.8E-29 1.7E-33 236.7 19.5 252 2-269 201-464 (554)
33 PF00324 AA_permease: Amino ac 100.0 9E-30 2E-34 244.0 10.4 225 32-266 199-430 (478)
34 PF13520 AA_permease_2: Amino 99.9 8.8E-27 1.9E-31 220.2 18.9 233 24-277 183-416 (426)
35 TIGR00930 2a30 K-Cl cotranspor 99.9 3.1E-26 6.8E-31 232.0 23.4 220 34-264 281-517 (953)
36 COG0531 PotE Amino acid transp 99.9 1.8E-26 4E-31 220.2 20.1 217 31-259 199-418 (466)
37 KOG2082 K+/Cl- cotransporter K 99.7 3.2E-16 6.9E-21 148.7 14.3 212 35-265 412-626 (1075)
38 KOG1288 Amino acid transporter 99.5 3.7E-13 8.1E-18 127.2 15.8 203 34-261 295-499 (945)
39 TIGR00837 araaP aromatic amino 99.5 1.3E-12 2.8E-17 121.9 16.3 197 34-253 179-377 (381)
40 TIGR00796 livcs branched-chain 99.2 9.6E-10 2.1E-14 101.5 15.1 179 34-243 175-365 (378)
41 KOG2083 Na+/K+ symporter [Inor 98.5 9.3E-08 2E-12 90.3 5.1 218 32-264 222-446 (643)
42 PF03222 Trp_Tyr_perm: Tryptop 98.5 2.3E-05 5E-10 73.4 19.9 192 31-243 182-374 (394)
43 TIGR00912 2A0309 spore germina 98.2 7.3E-05 1.6E-09 69.2 16.6 110 34-155 179-292 (359)
44 PRK15132 tyrosine transporter 98.2 0.00043 9.4E-09 64.9 20.0 192 34-248 182-375 (403)
45 PRK10483 tryptophan permease; 98.0 0.0008 1.7E-08 63.0 18.6 119 34-157 193-311 (414)
46 PHA02764 hypothetical protein; 97.9 6.5E-05 1.4E-09 66.4 9.3 103 35-181 183-285 (399)
47 TIGR00814 stp serine transport 97.9 0.00025 5.5E-09 66.4 13.6 119 33-159 186-311 (397)
48 PRK09664 tryptophan permease T 97.9 0.0019 4.1E-08 60.5 19.0 118 34-156 194-311 (415)
49 COG0814 SdaC Amino acid permea 97.6 0.0083 1.8E-07 56.7 18.8 63 31-93 191-254 (415)
50 KOG1304 Amino acid transporter 97.0 0.053 1.1E-06 51.1 16.1 59 34-93 242-303 (449)
51 KOG1303 Amino acid transporter 96.8 0.028 6E-07 53.3 12.8 91 36-145 231-321 (437)
52 PLN03074 auxin influx permease 96.7 0.08 1.7E-06 51.0 16.0 60 32-92 232-291 (473)
53 PRK13629 threonine/serine tran 96.6 0.14 3.1E-06 48.3 16.4 122 34-159 210-346 (443)
54 PF01490 Aa_trans: Transmembra 96.6 0.0017 3.7E-08 60.9 3.2 62 31-92 190-253 (409)
55 PRK11375 allantoin permease; P 96.3 0.39 8.5E-06 46.4 17.6 136 32-196 226-363 (484)
56 KOG1305 Amino acid transporter 96.2 0.12 2.6E-06 48.7 13.2 61 33-93 194-255 (411)
57 PF05525 Branch_AA_trans: Bran 96.2 0.47 1E-05 44.8 17.0 41 111-156 263-303 (427)
58 PRK09442 panF sodium/panthothe 96.0 1.6 3.5E-05 42.1 20.4 84 59-154 263-346 (483)
59 TIGR02119 panF sodium/pantothe 95.6 2.4 5.1E-05 40.8 19.9 96 48-155 251-346 (471)
60 COG3949 Uncharacterized membra 95.5 1.5 3.2E-05 39.7 16.3 89 47-151 193-281 (349)
61 PF03845 Spore_permease: Spore 95.3 0.32 6.9E-06 44.2 12.1 116 30-155 172-288 (320)
62 PTZ00206 amino acid transporte 94.8 2.3 4.9E-05 41.0 16.8 60 34-93 257-317 (467)
63 TIGR02121 Na_Pro_sym sodium/pr 94.5 1.5 3.1E-05 42.5 14.8 32 124-155 315-346 (487)
64 PRK10484 putative transporter; 94.4 4.4 9.6E-05 39.6 18.0 83 59-155 270-355 (523)
65 PF13906 AA_permease_C: C-term 94.3 0.13 2.8E-06 33.2 4.7 50 240-302 1-50 (51)
66 PF01566 Nramp: Natural resist 94.0 1 2.2E-05 41.6 12.2 35 124-158 250-284 (358)
67 PF02705 K_trans: K+ potassium 93.5 4.3 9.4E-05 39.5 15.6 159 36-217 204-364 (534)
68 COG1457 CodB Purine-cytosine p 93.4 7.3 0.00016 37.1 19.7 104 32-155 192-297 (442)
69 PRK00701 manganese transport p 92.9 3.4 7.3E-05 39.5 13.9 36 111-151 296-331 (439)
70 PRK12488 acetate permease; Pro 92.7 11 0.00024 37.1 20.4 38 44-82 272-309 (549)
71 COG1114 BrnQ Branched-chain am 92.5 9.4 0.0002 35.8 16.9 40 111-155 265-304 (431)
72 TIGR00813 sss transporter, SSS 92.0 2 4.3E-05 40.4 11.1 87 59-155 229-322 (407)
73 PF00474 SSF: Sodium:solute sy 91.7 1 2.2E-05 42.3 8.8 32 124-155 289-320 (406)
74 COG0591 PutP Na+/proline sympo 89.3 22 0.00048 34.5 17.3 42 111-157 314-355 (493)
75 TIGR02711 symport_actP cation/ 89.0 25 0.00054 34.6 18.6 90 59-153 287-380 (549)
76 PF01235 Na_Ala_symp: Sodium:a 87.6 10 0.00022 35.8 11.8 103 47-159 236-338 (416)
77 PF06570 DUF1129: Protein of u 87.3 5.1 0.00011 33.9 8.9 12 184-195 87-98 (206)
78 COG4145 PanF Na+/panthothenate 86.4 17 0.00038 33.7 12.0 97 44-155 246-345 (473)
79 PRK09395 actP acetate permease 85.5 39 0.00085 33.3 19.2 23 59-82 289-311 (551)
80 TIGR00794 kup potassium uptake 85.4 12 0.00026 37.6 11.5 155 37-214 242-398 (688)
81 COG4858 Uncharacterized membra 85.1 8.6 0.00019 31.8 8.5 21 176-196 89-114 (226)
82 COG1914 MntH Mn2+ and Fe2+ tra 81.8 48 0.001 31.4 15.3 29 126-154 284-312 (416)
83 PLN00149 potassium transporter 80.8 32 0.0007 35.1 12.4 155 38-212 273-429 (779)
84 PRK15419 proline:sodium sympor 80.5 59 0.0013 31.6 17.9 32 124-155 322-353 (502)
85 PLN00150 potassium ion transpo 78.8 33 0.00071 35.0 11.8 152 38-212 289-442 (779)
86 PRK15433 branched-chain amino 78.8 62 0.0013 30.9 19.3 31 125-155 276-306 (439)
87 TIGR00835 agcS amino acid carr 78.3 59 0.0013 30.9 12.9 102 47-158 263-364 (425)
88 PRK10745 trkD potassium transp 76.7 27 0.00058 34.7 10.3 152 38-212 217-370 (622)
89 PLN00151 potassium transporter 74.8 95 0.0021 32.1 13.7 152 38-212 349-502 (852)
90 PLN00148 potassium transporter 72.7 40 0.00086 34.5 10.5 118 38-178 272-389 (785)
91 PRK11017 codB cytosine permeas 70.4 97 0.0021 29.2 19.1 33 47-80 198-230 (404)
92 PF02028 BCCT: BCCT family tra 68.1 1.2E+02 0.0026 29.4 15.2 106 113-233 379-484 (485)
93 COG1115 AlsT Na+/alanine sympo 65.5 1.3E+02 0.0028 28.8 12.8 115 34-158 264-381 (452)
94 PF05297 Herpes_LMP1: Herpesvi 63.9 2.3 4.9E-05 37.5 0.0 26 172-197 13-38 (381)
95 COG4147 DhlC Predicted symport 62.4 1.5E+02 0.0033 28.6 14.3 150 36-196 237-409 (529)
96 PF09930 DUF2162: Predicted tr 62.4 31 0.00066 29.7 6.6 13 202-214 57-69 (224)
97 PTZ00206 amino acid transporte 61.1 1.6E+02 0.0034 28.3 15.0 50 111-165 123-172 (467)
98 PRK09509 fieF ferrous iron eff 60.9 65 0.0014 28.9 8.9 36 219-254 52-87 (299)
99 PRK09950 putative transporter; 60.6 1.7E+02 0.0037 28.5 17.1 97 128-233 400-498 (506)
100 TIGR00800 ncs1 NCS1 nucleoside 59.7 1.6E+02 0.0035 28.0 14.6 53 33-86 207-260 (442)
101 COG3158 Kup K+ transporter [In 58.8 1.9E+02 0.0042 28.5 11.7 63 153-218 315-381 (627)
102 PRK09928 choline transport pro 58.5 2.1E+02 0.0047 29.0 14.2 95 129-231 408-502 (679)
103 PRK03557 zinc transporter ZitB 57.1 1.5E+02 0.0033 26.8 11.0 37 221-257 62-98 (312)
104 PLN02351 cytochromes b561 fami 54.3 76 0.0016 27.6 7.6 26 274-299 196-221 (242)
105 PF14256 YwiC: YwiC-like prote 53.6 74 0.0016 24.7 6.9 16 213-228 31-46 (129)
106 COG1953 FUI1 Cytosine/uracil/t 53.2 2.2E+02 0.0049 27.6 16.9 59 32-91 239-298 (497)
107 TIGR02358 thia_cytX probable h 52.3 2E+02 0.0044 26.8 19.5 40 52-92 192-231 (386)
108 COG4025 Predicted membrane pro 52.3 1.1E+02 0.0023 26.6 7.9 19 149-167 54-72 (284)
109 COG1294 AppB Cytochrome bd-typ 50.4 2.1E+02 0.0045 26.4 13.2 29 245-273 266-294 (346)
110 PF11998 DUF3493: Protein of u 49.4 33 0.00072 24.0 3.8 39 53-91 7-45 (75)
111 PF04235 DUF418: Protein of un 48.5 1.2E+02 0.0026 24.3 7.8 12 297-308 142-153 (163)
112 PF01102 Glycophorin_A: Glycop 47.5 13 0.00029 28.6 1.8 15 291-305 82-96 (122)
113 TIGR03648 Na_symport_lg probab 47.3 2.9E+02 0.0063 27.2 18.8 31 125-155 364-394 (552)
114 cd08764 Cyt_b561_CG1275_like N 45.5 99 0.0021 26.4 6.9 27 280-306 177-203 (214)
115 COG4146 Predicted symporter [G 42.8 2.9E+02 0.0064 26.0 16.6 109 32-155 244-356 (571)
116 PRK03356 L-carnitine/gamma-but 42.8 3.3E+02 0.0072 26.6 16.1 98 128-233 403-500 (504)
117 PF00209 SNF: Sodium:neurotran 42.3 3.4E+02 0.0073 26.5 12.2 118 32-155 248-374 (523)
118 PRK00968 tetrahydromethanopter 41.5 35 0.00075 28.9 3.5 34 52-85 200-234 (240)
119 PF05767 Pox_A14: Poxvirus vir 38.4 1.1E+02 0.0024 22.2 5.1 21 282-302 52-72 (92)
120 PF11174 DUF2970: Protein of u 38.2 1.1E+02 0.0025 19.9 4.9 26 37-62 3-28 (56)
121 PRK09917 hypothetical protein; 38.2 83 0.0018 25.4 5.2 75 177-254 28-102 (157)
122 PHA02680 ORF090 IMV phosphoryl 37.2 1.2E+02 0.0025 21.8 5.0 16 284-299 55-70 (91)
123 KOG1289 Amino acid transporter 36.1 4.4E+02 0.0095 26.0 14.1 160 51-234 65-228 (550)
124 PHA02898 virion envelope prote 35.0 81 0.0018 22.6 4.0 20 282-301 52-71 (92)
125 PF01299 Lamp: Lysosome-associ 33.4 32 0.0007 31.0 2.4 22 284-305 281-302 (306)
126 TIGR01297 CDF cation diffusion 33.2 1.6E+02 0.0034 25.7 6.7 34 222-255 34-67 (268)
127 PRK10489 enterobactin exporter 33.0 3.3E+02 0.0072 25.1 9.3 11 301-311 403-413 (417)
128 PF08693 SKG6: Transmembrane a 31.1 49 0.0011 20.0 2.1 17 285-301 23-39 (40)
129 PRK09546 zntB zinc transporter 30.6 81 0.0018 28.6 4.5 9 293-301 314-322 (324)
130 PHA03049 IMV membrane protein; 30.3 43 0.00094 22.6 1.9 20 285-304 10-29 (68)
131 COG4060 MtrD Tetrahydromethano 29.8 72 0.0016 26.1 3.4 33 53-85 191-224 (230)
132 PRK13024 bifunctional preprote 29.1 6.6E+02 0.014 26.0 11.8 59 136-196 324-382 (755)
133 COG0733 Na+-dependent transpor 28.8 5.3E+02 0.011 24.7 16.5 53 34-87 215-268 (439)
134 COG1079 Uncharacterized ABC-ty 28.8 1.7E+02 0.0036 26.5 6.0 22 177-198 59-80 (304)
135 PF14494 DUF4436: Domain of un 28.6 2.9E+02 0.0062 24.3 7.3 25 248-272 202-226 (256)
136 PRK15028 cytochrome bd-II oxid 28.2 3.2E+02 0.0068 25.6 7.9 22 247-268 291-312 (378)
137 PF06808 DctM: DctM-like trans 27.8 5.3E+02 0.011 24.4 10.3 55 111-165 77-131 (416)
138 COG3610 Uncharacterized conser 27.7 2.2E+02 0.0047 23.0 5.9 70 178-249 25-94 (156)
139 TIGR00383 corA magnesium Mg(2+ 27.4 89 0.0019 28.1 4.2 12 248-259 260-271 (318)
140 COG1272 Predicted membrane pro 27.3 3.3E+02 0.0071 23.5 7.3 42 217-259 122-163 (226)
141 PF14667 Polysacc_synt_C: Poly 26.7 2.9E+02 0.0063 21.0 7.8 22 176-197 27-48 (146)
142 PRK06433 NADH dehydrogenase su 25.9 2.6E+02 0.0056 20.1 6.5 19 179-197 27-45 (88)
143 PRK13108 prolipoprotein diacyl 25.5 3.5E+02 0.0075 26.1 7.8 13 200-212 194-206 (460)
144 COG0598 CorA Mg2+ and Co2+ tra 25.4 96 0.0021 28.2 4.0 56 246-301 262-320 (322)
145 KOG2349 Na+:iodide/myo-inosito 23.7 4.4E+02 0.0095 26.3 8.3 117 32-157 238-362 (585)
146 PRK10921 twin-arginine protein 23.4 3.4E+02 0.0073 23.9 6.9 23 132-154 72-94 (258)
147 PHA03048 IMV membrane protein; 22.8 2.8E+02 0.0062 20.0 5.0 21 282-302 51-71 (93)
148 PHA03164 hypothetical protein; 22.7 93 0.002 21.6 2.5 33 54-86 46-78 (88)
149 PF06024 DUF912: Nucleopolyhed 22.5 97 0.0021 22.9 2.8 19 287-305 75-93 (101)
150 PRK14726 bifunctional preprote 22.4 9.3E+02 0.02 25.4 11.7 15 144-158 438-452 (855)
151 PTZ00382 Variant-specific surf 22.3 77 0.0017 23.3 2.2 10 291-300 85-94 (96)
152 PF03825 Nuc_H_symport: Nucleo 21.8 6.7E+02 0.014 23.5 10.0 21 176-196 63-83 (400)
153 PRK06638 NADH:ubiquinone oxido 21.7 4.8E+02 0.01 21.8 11.6 13 178-190 26-38 (198)
154 PF15099 PIRT: Phosphoinositid 21.4 56 0.0012 25.2 1.3 25 280-304 86-111 (129)
155 PF05297 Herpes_LMP1: Herpesvi 21.3 32 0.00068 30.6 0.0 20 282-301 56-75 (381)
156 PRK13476 cytochrome b6-f compl 20.9 4.6E+02 0.01 21.3 6.6 32 237-269 121-152 (160)
157 COG1230 CzcD Co/Zn/Cd efflux s 20.7 6.3E+02 0.014 22.8 10.8 29 218-246 62-90 (296)
158 PRK13022 secF preprotein trans 20.6 6.1E+02 0.013 22.6 8.3 63 134-196 184-246 (289)
159 PF02133 Transp_cyt_pur: Perme 20.5 4.1E+02 0.0089 25.0 7.4 33 49-82 218-250 (440)
160 KOG4753 Predicted membrane pro 20.4 93 0.002 23.7 2.3 34 47-80 32-65 (124)
161 COG2271 UhpC Sugar phosphate p 20.4 7.7E+02 0.017 23.7 10.2 48 138-196 66-113 (448)
162 PF07226 DUF1422: Protein of u 20.4 4E+02 0.0086 20.3 8.6 19 284-302 95-113 (117)
No 1
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=3.5e-40 Score=316.20 Aligned_cols=286 Identities=35% Similarity=0.678 Sum_probs=243.9
Q ss_pred cCcccccceeeccCCC-CCCCCchHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHH
Q 021145 10 QSASYVFTHFEMSPEA-TGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILAL 88 (317)
Q Consensus 10 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~ 88 (317)
++.++.++++ .+. +||.+.+.+++.++....|+|.|+|.+++++||+|||+||+|||+..++.+..+++++..+..
T Consensus 196 ~~~~~~~~~~---~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~ 272 (482)
T TIGR00907 196 NDGKFVFTNF---NNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVL 272 (482)
T ss_pred CChhhhheee---eCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777 444 378766778888999999999999999999999999999999999999988877666555555
Q ss_pred HhhccCchhhhcCCCcccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccc
Q 021145 89 CFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSS 168 (317)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~ 168 (317)
....+|.+++.+++. ++| +.+.+.+.+ |.++...++....+++.+++.++++++.||+++++||||.+|+++
T Consensus 273 ~~~~~~~~~~~~~~~---~~p-~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~ 344 (482)
T TIGR00907 273 FFSMGDIDSLISSTT---GQP-IAQIFYNAL----GNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSRDGGLPFSP 344 (482)
T ss_pred HhcCCCHHHHhcCCC---CCh-HHHHHHHHh----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCchH
Confidence 545545666655443 357 888888776 454567778888999999999999999999999999999999989
Q ss_pred cceeccCCCCChHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCCCcccCCchhH
Q 021145 169 IWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRP 248 (317)
Q Consensus 169 ~~~~~~~r~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (317)
+|+|+|||+|+|+++++++.+++.++.++..++.+.++.++++++...++.|.++..+.+++||+++++||||.+++++.
T Consensus 345 ~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~~~~~~~~~~f~lg~~~~~ 424 (482)
T TIGR00907 345 LWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVSYVIPIICKLAKGRNTIAPGPFWLGKYGFF 424 (482)
T ss_pred hhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCCcchHH
Confidence 99999988899999999999999887776666678899999999999999999999888766666567889999778899
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCCCCCccchHHHHHHHHHHHhhheeeeccceecCC
Q 021145 249 ICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGP 306 (317)
Q Consensus 249 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 306 (317)
++.++++++.+.++..++|...|.+..+++|....++.+++++.++|..+.||++++|
T Consensus 425 ~~~~~~~~~~~~~v~~~~P~~~p~~~~~~ny~~~~~~~~~~~~~~~~~~~~r~~~~gp 482 (482)
T TIGR00907 425 VNAVAVAWTVFSSVLFSFPPVLPVTPENMNYAVVVFAGVLAISLVYWKYKGRKEFTGP 482 (482)
T ss_pred HHHHHHHHHHHHHhheeCCCCCCCCcccCChHhHHHHHHHHHHHHHheEeceeeccCc
Confidence 9999999999999999999988888899999999999999999999999999999886
No 2
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-40 Score=303.85 Aligned_cols=293 Identities=39% Similarity=0.733 Sum_probs=272.1
Q ss_pred ccCcccccceeeccCCCCCCCCchHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHH
Q 021145 9 TQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILAL 88 (317)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~ 88 (317)
.+++++.|+++ .|-+||++.++++..++....|.+.|+|++++++||+|||+|+.||+|+.++.+..++.....+.+
T Consensus 231 Fns~~~iF~~f---~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i 307 (550)
T KOG1289|consen 231 FNSGSFIFGKF---NNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGI 307 (550)
T ss_pred CCCCceeeecc---cccCCCCcchHHHHHhhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 46688999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhcc-CchhhhcCCCcccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCcc
Q 021145 89 CFSIQ-DFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFS 167 (317)
Q Consensus 89 ~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~ 167 (317)
...++ |.+.+.+++. ++| +.+.+.+.+|+. ....+....++..+-+..+...+.||+.|+-+|||.+|++
T Consensus 308 ~~~i~~D~~~v~ns~~---g~p-~~~i~~~~lg~k-----~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S 378 (550)
T KOG1289|consen 308 AYTIPDDLDAVLNSSL---GQP-IVQIYYQALGKK-----GAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFS 378 (550)
T ss_pred HHhccchHHHHhcCCC---CCh-HHHHHHHhcCCC-----ceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCc
Confidence 99997 6667767665 789 999999999655 2366777788888889999999999999999999999999
Q ss_pred ccceeccCCCCChHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCCCcccCCchh
Q 021145 168 SIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASR 247 (317)
Q Consensus 168 ~~~~~~~~r~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (317)
++++|+||++++|.+|+++..+++.++.++.+++...++.+.+++.+..++.|..+.+..+..+|++.++.||.++++..
T Consensus 379 ~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs~a~i~l~~Ay~iP~~~rlf~~r~~f~~gp~~lGk~s~ 458 (550)
T KOG1289|consen 379 KYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNALFSAAAIALFIAYAIPIFCRLFFGRDDFRPGPFNLGKFSK 458 (550)
T ss_pred ceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHhheeecccccCCCCcccccccc
Confidence 99999998889999999999999999999899999999999999999999999999999888888778899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCCCCCccchHHHHHHHHHHHhhheeeeccceecCCcccccCC
Q 021145 248 PICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNIDNE 313 (317)
Q Consensus 248 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 313 (317)
++.++++.+.+++.++.++|+.+|.+.++|||+..+.+...++.+++|+..+||+.++|+.++.+|
T Consensus 459 p~~~i~v~w~lf~~vil~fP~~~pvT~~~MNya~VV~gg~~lf~li~~~~~~~k~f~gP~~~~~~~ 524 (550)
T KOG1289|consen 459 PIGIIAVLWVLFMIVILCFPSVYPVTADNMNYACVVYGGVMLFCLIYYFVSARKWFKGPIPSVLEE 524 (550)
T ss_pred chHHHHHHHHHHHHHHHhCCcccCCCcccCceEEEeehhhhhhhhheeeeecceeecCCccccccc
Confidence 999999999999999999999999999999999999999999999999999999999998877666
No 3
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=1.6e-35 Score=284.21 Aligned_cols=252 Identities=14% Similarity=0.153 Sum_probs=209.4
Q ss_pred CCCCchHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCccc
Q 021145 27 GISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETA 106 (317)
Q Consensus 27 ~~~~~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~ 106 (317)
.|+++..+++.++...+|+|.|+|.+++++||+|||+||+|||+..++..+.++|++...+....+ |++++....
T Consensus 214 ~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~-p~~~~~~~~---- 288 (499)
T PRK15049 214 FFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLL-PWSAYQAGQ---- 288 (499)
T ss_pred cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheec-chhccCcCC----
Confidence 344444567788889999999999999999999999999999999999999999999999999998 677765433
Q ss_pred CCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHH
Q 021145 107 GAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWL 186 (317)
Q Consensus 107 ~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~ 186 (317)
.| +.+.+.+. |.++...++.+..+++.+++.|+.+++.+|+++++||||.+| ++|+|+| |+++|++|+++
T Consensus 289 -sP-~~~~~~~~-----g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP--~~f~kv~-k~~~P~~Ail~ 358 (499)
T PRK15049 289 -SP-FVTFFSKL-----GVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAP--SFMAKMS-RQHVPYAGILA 358 (499)
T ss_pred -CH-HHHHHHHc-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC--HHHHHhC-CCCCCHHHHHH
Confidence 37 77776554 677788999999999999999999999999999999999999 9999999 88999999999
Q ss_pred HHHHHHHHHhh-hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----CcCCCcccCCchhHHHHHHHHHHHHHH
Q 021145 187 CAAICIILGLP-ILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK----FNAGPFYLGKASRPICLIAFLWICYTC 261 (317)
Q Consensus 187 ~~~i~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~ 261 (317)
+.+++.+..++ ...+.+.++.+.++++...++.|.+++++.+++||+. ++++|||.| .++..++++++++++..
T Consensus 359 ~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~l~~R~~~~~~~~~~~pf~~~-~~p~~~~~~l~~~~~~~ 437 (499)
T PRK15049 359 TLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRLRKAIKEGKAADVSFKLP-GAPFTSWLTLLFLLSVL 437 (499)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccc-CccHHHHHHHHHHHHHH
Confidence 98886654332 2455788999999999999999999999999877652 225799999 58999999999998888
Q ss_pred HHhhCCCCCCCCCCCccchHHHHHHHHHHHhhheeeecc
Q 021145 262 SVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDAR 300 (317)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 300 (317)
+..++. . +++++.......+.++..++|+.+|+
T Consensus 438 ~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (499)
T PRK15049 438 VLMAFD--Y----PNGTYTIAALPIIGILLVIGWFGVRK 470 (499)
T ss_pred HHHHHc--C----cchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777652 1 25567777777777777777765333
No 4
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=4.1e-34 Score=273.62 Aligned_cols=250 Identities=20% Similarity=0.291 Sum_probs=206.8
Q ss_pred hHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchH
Q 021145 32 PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVP 111 (317)
Q Consensus 32 ~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 111 (317)
..+++.+....+|+|.|+|.+++++||+|||+||+|||+..++.++.+.|.+..++.....++.++....++ +.|
T Consensus 212 ~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~p-- 286 (475)
T TIGR03428 212 YGAFLVSGLMAAYVMVGFGSAGELSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAE---GLP-- 286 (475)
T ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCC---chH--
Confidence 346778888999999999999999999999999999999999999998888888877777654433322222 234
Q ss_pred HHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHH
Q 021145 112 AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAIC 191 (317)
Q Consensus 112 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~ 191 (317)
..+.+.. |+++.. ++....+++.+++.++++.+.+|+++++||||.+|++++|+|+|||+++|++++++..+++
T Consensus 287 -~~~~~~~----g~~~~~-~~~~~~~i~~~~~~~~~~~~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~ 360 (475)
T TIGR03428 287 -YVLSAVL----DSPWGT-VLLVDVAIAILVCTLAIQTAGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLC 360 (475)
T ss_pred -HHHHHHh----CcHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHH
Confidence 4455555 444443 4455667899999999999999999999999999966699999999999999999999999
Q ss_pred HHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------CcCCCcccCCchhHHHHHHHHHHHHHHHHh
Q 021145 192 IILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK-------FNAGPFYLGKASRPICLIAFLWICYTCSVF 264 (317)
Q Consensus 192 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (317)
.++.++..++.+.|+.+.+++++...+.|.++....+.+|+++ .+++||+++++++.+++++++++++..+..
T Consensus 361 ~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~~~~l~~~~~~~~~~~~~~~~g~f~lg~~g~~vn~~a~~~~~~~~v~~ 440 (475)
T TIGR03428 361 IGILLINVGNSALFATLASVCIVLIYLAYLLVTVPLLLRRLRGWPRGDQTDPAGLFSLGRWGLPVNILAVVYGALMVVNL 440 (475)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 8888776777889999999999999999999887777554332 367899999999999999999999999999
Q ss_pred hCCCCCCCCC----CCccchHHHHHHHHHHHh
Q 021145 265 LLPTFYPISW----DTFNYAPVALGVGLGLIM 292 (317)
Q Consensus 265 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 292 (317)
++|...|.+. ++|||...+++.++++..
T Consensus 441 ~~P~~~~~~~~~~~~~mny~~~~~~~~~~~~~ 472 (475)
T TIGR03428 441 SWPRPEVYDPSGDGPIMLWSAPIFVGAVLLLG 472 (475)
T ss_pred HCCCCCCCCCCCcccccchHHHHHHHHHHHHH
Confidence 9998877766 689998877777766554
No 5
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=1.3e-34 Score=277.08 Aligned_cols=261 Identities=15% Similarity=0.146 Sum_probs=214.8
Q ss_pred hhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHHHHHHhc
Q 021145 41 VSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFH 120 (317)
Q Consensus 41 ~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 120 (317)
..+|+|.|+|.++..+||+|||+||+|||+..+..++.++|++.+++....+ |++++.... + ..+.+.+..+
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~-~~~~~~~~~------~-~~~~~~~~~~ 273 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFII-PREDISLTQ------S-LLVAFDNAFH 273 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcc-CHhhccccc------c-HHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999888 566653321 2 3233333332
Q ss_pred cccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHHHHHHhhh--
Q 021145 121 GRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPI-- 198 (317)
Q Consensus 121 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~~~~~~~-- 198 (317)
.. |.++...++.+...++.+++.++++.+.+|.+++++|||.+| ++|+|+| |+|+|+++++++.+++.++.++.
T Consensus 274 ~~-g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~~a~ardg~lP--~~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~ 349 (474)
T TIGR03813 274 WA-GLSWLGPILAFALAIGVLAGVVTWVAGPSSGMLAVAKAGYLP--TFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVV 349 (474)
T ss_pred Hc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--HHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 22 566777888888889999999999999999999999999999 9999999 88999999999998876555433
Q ss_pred ccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCcCCCcccCC--c-hhHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 021145 199 LKV-NVVFTAITSICTIGWVGGYAVPIFARMVMAEQ-KFNAGPFYLGK--A-SRPICLIAFLWICYTCSVFLLPTFYPIS 273 (317)
Q Consensus 199 ~~~-~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~-~~~~~~~~~~~--~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 273 (317)
.++ .+.++.+.++++...++.|.+++.+.+++|++ ++.+||||.|. + .+.+++++++++++.++..++|+..+.+
T Consensus 350 ~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~~~~~~~rpf~~p~g~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~ 429 (474)
T TIGR03813 350 MPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRYSQPDRPRPYRIPGGLAGMWFIGGLGFVGSALAFVLSFIPPSQIGT 429 (474)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEecCCccchhHHHHHHHHHHHHHHheeEeCCcccCC
Confidence 223 46789999999999999999999998877754 45689999963 3 3579999999999999999999988888
Q ss_pred CCCccchHHHHHHHHHHHhhheeeeccce--ecCCcccccCC
Q 021145 274 WDTFNYAPVALGVGLGLIMLWWLLDARKW--FTGPVRNIDNE 313 (317)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~ 313 (317)
.++++|....+++..++..++|+.++||+ ++++..+.+.+
T Consensus 430 ~~~~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (474)
T TIGR03813 430 GSPTRYVGLLIGLAALFVTAPFLIYARRKPHWRDPNSNFEPF 471 (474)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhchhhcCccccccCc
Confidence 89999998888888888888888877665 66776555443
No 6
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=2.5e-34 Score=275.55 Aligned_cols=249 Identities=16% Similarity=0.162 Sum_probs=199.1
Q ss_pred ccccceeeccCCCCCCCCc-----hHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHH
Q 021145 13 SYVFTHFEMSPEATGISSK-----PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILA 87 (317)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~-----~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~ 87 (317)
...++++ .++++|.++ ..++..++...+|+|.|+|.+++++||+|||+||+|||++.+..++.++|++..++
T Consensus 175 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 175 YIGFRYW---HDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKSIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred CCccccc---CCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344454 444556543 46789999999999999999999999999999999999999999999999999888
Q ss_pred HHhhccCchh--hhcCCC--cccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCC
Q 021145 88 LCFSIQDFSY--LYDKSN--ETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKG 163 (317)
Q Consensus 88 ~~~~~~~~~~--~~~~~~--~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~ 163 (317)
..... ++++ +.++.. +..+.| +....+ .. |.++...++.++++++.+++.|+++++.+|+++++||||.
T Consensus 252 ~~~~~-p~~~~~l~~~~~~~~~~~~p-~~~~~~-~~----g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~ 324 (478)
T TIGR00913 252 IGFLV-PYNDPRLLSSSSSSDSAASP-FVIAIQ-NH----GIKVLPHIFNAVILISVLSAANSSLYASSRTLYALAHQGL 324 (478)
T ss_pred heeec-cCCChhhcccccCCCcCCCc-HHHHHH-Hc----CCchHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCc
Confidence 77777 4332 323211 011246 654433 33 6677888999999999999999999999999999999999
Q ss_pred CCccccceeccCCCCChHHHHHHHHHHHHHHHhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------cCc
Q 021145 164 IPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQ------KFN 236 (317)
Q Consensus 164 lP~~~~~~~~~~r~~~P~~a~~~~~~i~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~------~~~ 236 (317)
+| ++|+|+| |+++|+++++++.+++.+..+.. ..+.+.++.+.++++...++.|.+.+++.+++||+ ++.
T Consensus 325 lP--~~f~k~~-~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~i~~r~~~~~~~~~~~ 401 (478)
T TIGR00913 325 AP--KIFAYVD-RRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGFFTWMCICLSHIRFRKAMKAQGRSLD 401 (478)
T ss_pred cc--HHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 99 9999999 78999999999999876544422 23467899999999999999999999999877764 123
Q ss_pred CCCcccCCchhHHHHHHHHHHHHHHHHhhCCCCCCCCCC
Q 021145 237 AGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWD 275 (317)
Q Consensus 237 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (317)
+||||.| .++..++++++.+++.+...++|...|.+.+
T Consensus 402 ~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 439 (478)
T TIGR00913 402 ELPYKSQ-TGPYGSYYALFFNILILIAQGYVAFAPVKFS 439 (478)
T ss_pred cCCccCC-CcchHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 6899998 8889999999999998888877766665433
No 7
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=8.5e-34 Score=269.32 Aligned_cols=254 Identities=15% Similarity=0.144 Sum_probs=198.6
Q ss_pred CCCCCCCchH-HHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCC
Q 021145 24 EATGISSKPY-AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKS 102 (317)
Q Consensus 24 ~~~~~~~~~~-~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~ 102 (317)
+.++|.+.++ +++.++..++|+|.|+|.+++++||+|||+||+|||++.++.++.++|+.......... +++++.+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~~~~~~~~~~~~~~~~g~~-~~~~l~~~~ 259 (442)
T TIGR00908 181 GASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAILTLLALAAGILVVGPGAA-DAKELMGSN 259 (442)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHhCCCc
Confidence 3445655444 78999999999999999999999999999999999999999999999998877666666 677775544
Q ss_pred CcccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHH
Q 021145 103 NETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSN 182 (317)
Q Consensus 103 ~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~ 182 (317)
. | +.+.+.+.+| +..+...++.+..+++.+++.++.+++.+|+++++||||.+| ++|+|+| |+|+|++
T Consensus 260 ~-----p-~~~~~~~~~g---~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~l~a~ardg~lP--~~~~~~~-~~~~P~~ 327 (442)
T TIGR00908 260 N-----P-LPEALESIYG---GSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIFALSRAGYLP--ESLSKVN-RKKAPVL 327 (442)
T ss_pred c-----h-HHHHHHHHhC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--HHHHHhC-CCCCcHH
Confidence 3 6 7788877763 224566677778888999999999999999999999999999 9999999 9999999
Q ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcCCCcccCCchhHHHHHHHHHHHHHH
Q 021145 183 AVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK-FNAGPFYLGKASRPICLIAFLWICYTC 261 (317)
Q Consensus 183 a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~ 261 (317)
+++++.+++.++.+ .. ..+.+.+++++..++.|.+.+.+.+++||++ +.+||||.| .+++.++++++.+++.+
T Consensus 328 Ail~~~~i~~~~~l--~~---~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p~~~rp~~~p-~~~~~~~l~~~~~~~~l 401 (442)
T TIGR00908 328 AIVVPGVIGFGLSL--TG---QTALIILVSVFGAIISYVLSMAAHFTLRIRRPDMERPYRTP-GGILTPGVALVLACVAL 401 (442)
T ss_pred HHHHHHHHHHHHHH--hc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCC-CcchHHHHHHHHHHHHH
Confidence 99999999887665 22 2456778888899999999999998777665 448999998 66777777777776665
Q ss_pred HHhhCCCCCCCCCCCccchHHHHHHHHHHHhhheeeeccceecC
Q 021145 262 SVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTG 305 (317)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 305 (317)
+...... . ..+....++.++..++|++++|+++++
T Consensus 402 ~~~~~~~--------~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 436 (442)
T TIGR00908 402 VTGFYVD--------P-RVVVGAVAIFVVLIGYYFLYSRHHLVS 436 (442)
T ss_pred HHHHHcC--------h-HHHHHHHHHHHHHHHHHHhhhhchhhc
Confidence 5443210 0 122335666667777776766555444
No 8
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=1.4e-33 Score=271.04 Aligned_cols=260 Identities=15% Similarity=0.124 Sum_probs=202.5
Q ss_pred HHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHH
Q 021145 35 VILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQI 114 (317)
Q Consensus 35 ~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 114 (317)
.+..+...+|+|.|+|.+++.+||+|||+||+|||++.+++++.++|.+.+++....+ |++++...+. ..+.
T Consensus 196 ~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~~i~~~~l~~l~~~~i~~~~-p~~~~~~~~~-------~~~~ 267 (507)
T TIGR00910 196 TLVVFVAFIGAYMGVEASASHINELENPGRDYPLAMILLMIAAICLDAIGGFSIAAVI-PGKEINLSAG-------VIQT 267 (507)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHHHHHHheec-ChhhcccchH-------HHHH
Confidence 4455556799999999999999999999999999999999999999999888888777 5555532221 2222
Q ss_pred HHHHhcccc-CChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHHHH
Q 021145 115 LYDAFHGRY-HNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICII 193 (317)
Q Consensus 115 ~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~~ 193 (317)
+........ +.++...++.+..+++.++++++++.+.+|.+++++|||.+| ++|+|+| |+++|+++++++++++.+
T Consensus 268 ~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~sR~l~~~ardg~lP--~~~~k~n-k~~~P~~a~~~~~~i~~l 344 (507)
T TIGR00910 268 FQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSRGMFAAAQKGLLP--AAFAKMN-KHEVPVPLVIIQGIITSI 344 (507)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcC--HHHHhhC-cCCCcHHHHHHHHHHHHH
Confidence 222211110 125677788889999999999999999999999999999999 9999999 889999999999999887
Q ss_pred HHhhhc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcCCCcccCC--c-hhHHHHHHHHHHHHHHHHhh
Q 021145 194 LGLPIL----KVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK-FNAGPFYLGK--A-SRPICLIAFLWICYTCSVFL 265 (317)
Q Consensus 194 ~~~~~~----~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~--~-~~~i~~~~~~~~~~~~~~~~ 265 (317)
+.++.. ++...+..++++++...++.|.+.+++.+++|+|+ +.+||||.|. + ..+++.++++.+++..+..+
T Consensus 345 ~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~~a~i~lr~k~p~~~rpf~~pg~~~~~~i~~~~~~~~~~~~~v~~~ 424 (507)
T TIGR00910 345 AGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYFVLILKHPDLKRTFNIPGGIGGKLIIAGIGFLLSIFAFFISF 424 (507)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEecCCccchhhHHHHHHHHHHHHHheee
Confidence 654332 23556778888999999999999999888776654 4589999974 2 36889999999999999999
Q ss_pred CCCCCCCCCCCccchHHHH---HHHHHHHhhheeeeccceecC
Q 021145 266 LPTFYPISWDTFNYAPVAL---GVGLGLIMLWWLLDARKWFTG 305 (317)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~ 305 (317)
+|+..+.....++|..+.+ +++.++..++|..++||++++
T Consensus 425 ~Pp~~~~~~~~~~y~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 467 (507)
T TIGR00910 425 LPPANIAGDETDMYQEILLISFLVTAALPFIIYALHDKKGHAN 467 (507)
T ss_pred eCCCccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc
Confidence 9987776667777766554 334555667776766665544
No 9
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=3.6e-33 Score=265.71 Aligned_cols=245 Identities=16% Similarity=0.128 Sum_probs=207.6
Q ss_pred hHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchH
Q 021145 32 PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVP 111 (317)
Q Consensus 32 ~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 111 (317)
..++..++...+|+|.|+|.+++.+||+|||+||+|||+..+...+.++|++...+..... |++++...+ .| +
T Consensus 208 ~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~-----~p-~ 280 (458)
T PRK10249 208 WNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALY-PWVEVKSNS-----SP-F 280 (458)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHheec-cccccCccC-----Cc-H
Confidence 3468999999999999999999999999999999999999999999999999888888887 555553332 37 8
Q ss_pred HHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHH
Q 021145 112 AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAIC 191 (317)
Q Consensus 112 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~ 191 (317)
.+.+.+. ++++...++.+..+++.+++.|+.+++.+|+++++||||.+| ++|+|+| |+|+|++|++++.+++
T Consensus 281 ~~~~~~~-----~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~lP--~~~~kv~-~~~~P~~All~~~~i~ 352 (458)
T PRK10249 281 VMIFHNL-----DSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAP--KFLTRVS-RRGVPINSLMLSGAIT 352 (458)
T ss_pred HHHHHHc-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC--HHHHHhC-CCCCCHHHHHHHHHHH
Confidence 7777765 466788888889999999999999999999999999999999 9999999 7799999999999999
Q ss_pred HHHHhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---cCcCCCcccCCchhHHHHHHHHHHHHHHHHhhCC
Q 021145 192 IILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQ---KFNAGPFYLGKASRPICLIAFLWICYTCSVFLLP 267 (317)
Q Consensus 192 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 267 (317)
.+..++. ..+.+.++.+.++++...++.|.+++.+.+++||+ +.+++|||.| +++..++++++++.+..+...
T Consensus 353 ~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~p~~~~-~~p~~~~~~l~~~~~~~v~~~-- 429 (458)
T PRK10249 353 SLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRAAMRRQGRETQFKAL-LYPFGNYLCIAFLGMILLLMC-- 429 (458)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCC-CccHHHHHHHHHHHHHHHHHH--
Confidence 8777653 55678899999999999999999999999977753 3346899987 899999999999988877764
Q ss_pred CCCCCCCCCccchHHHHHHHHHHHhhheeeec
Q 021145 268 TFYPISWDTFNYAPVALGVGLGLIMLWWLLDA 299 (317)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 299 (317)
..+++++.....++++++..+.|..++
T Consensus 430 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (458)
T PRK10249 430 -----TMDDMRLSAILLPVWIVFLFVAFKTLR 456 (458)
T ss_pred -----HcchHHHHHHHHHHHHHHHHHHHHhee
Confidence 345677877777777776666665544
No 10
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=4.2e-33 Score=264.76 Aligned_cols=246 Identities=15% Similarity=0.088 Sum_probs=195.0
Q ss_pred hHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchH
Q 021145 32 PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVP 111 (317)
Q Consensus 32 ~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 111 (317)
..++..++..++|+|.|||.+++++||+|||+||+|||+..++.++.++|++.+.+..... |++++.+++. | +
T Consensus 194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~~~~i~~~~Y~l~~~~~~~~~-~~~~l~~~~~-----p-~ 266 (445)
T PRK11357 194 FMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLVLVLYTLLALVISGLM-PFDKLANSET-----P-I 266 (445)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHhcCCc-----h-H
Confidence 3468899999999999999999999999999999999999999999999999999998888 7888866544 6 7
Q ss_pred HHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHH
Q 021145 112 AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAIC 191 (317)
Q Consensus 112 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~ 191 (317)
.+.+++. +. .+++...++.+..+++.+++.++++.+.+|++++++|||.+| ++|+|+|||+|+|+++++++.+++
T Consensus 267 ~~~~~~~-~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lp--~~~~~v~~~~~tP~~a~l~~~~~~ 341 (445)
T PRK11357 267 SDALTWI-PA--LGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFF--KCFGHVHPKYNTPDVSIILQGALG 341 (445)
T ss_pred HHHHHHH-Hh--cchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCch--HHHHHhCCCCCCCHHHHHHHHHHH
Confidence 6776653 10 134456677778888999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCCCcccCCchhHHHHHHHHHHHHHHHHhhCCCCCC
Q 021145 192 IILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYP 271 (317)
Q Consensus 192 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 271 (317)
.++.+ . ..++.+.+.......+.|.+...+.+++||+++.+||||.| ..+.+++++++.+++..+.....
T Consensus 342 ~~~~~--~---~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~~~~~~~~k~p-~~~~~~~~~~~~~~~~~~~~~~~---- 411 (445)
T PRK11357 342 IFFIF--V---SDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRDDYKPLWRTP-AFGLMTTLAIASSLILVASTFVW---- 411 (445)
T ss_pred HHHHH--H---cCHHHHHHHHHHHHHHHHHHHHHHHheeecCCCCCCCcccC-CchHHHHHHHHHHHHHHHHHHHc----
Confidence 87765 2 24667777888888888998888888777777778899999 66777777777666665433211
Q ss_pred CCCCCccchHHHHHHHHHHHhhheeeecccee
Q 021145 272 ISWDTFNYAPVALGVGLGLIMLWWLLDARKWF 303 (317)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 303 (317)
+.. ..+....++.+++...|+.++||++
T Consensus 412 ---~~~-~~~~~~~~~~~~g~~~y~~~~~~~~ 439 (445)
T PRK11357 412 ---API-PGLICAVIVIATGLPAYAFWAKRSR 439 (445)
T ss_pred ---CcH-HHHHHHHHHHHHhhhHHhheechhh
Confidence 111 1223455666667776766665543
No 11
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=4.9e-33 Score=265.91 Aligned_cols=253 Identities=15% Similarity=0.171 Sum_probs=196.8
Q ss_pred CCCC-CchHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCc
Q 021145 26 TGIS-SKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNE 104 (317)
Q Consensus 26 ~~~~-~~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~ 104 (317)
++|. ++..+++.++..++|+|.|+|.+++.+||+|||+||+|||+..++.++.++|++.+++..... |+++....++
T Consensus 198 ~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~-p~~~~~~~~~- 275 (471)
T PRK11387 198 EGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALI-PMQQAGVEKS- 275 (471)
T ss_pred CCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheec-CccccCccCC-
Confidence 4553 334578899999999999999999999999999999999999999999999999999888888 5665543333
Q ss_pred ccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHH
Q 021145 105 TAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAV 184 (317)
Q Consensus 105 ~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~ 184 (317)
| +.+.+++. |+++...++.+..+++.+++.|+++++.+|++++|||||.+| ++|+|+| |+++|++++
T Consensus 276 ----p-~~~~~~~~-----g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP--~~f~~~~-~~~~P~~Ai 342 (471)
T PRK11387 276 ----P-FVLVFEKV-----GIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNEGTLP--ACFARLT-KRGIPLTAL 342 (471)
T ss_pred ----h-HHHHHHHc-----CCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCcC--HHHHHhC-CCCCcHHHH
Confidence 6 77766654 677888999999999999999999999999999999999999 9999999 779999999
Q ss_pred HHHHHHHHHHHhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC------cCCCcccCCchhHHHHHHHHHH
Q 021145 185 WLCAAICIILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKF------NAGPFYLGKASRPICLIAFLWI 257 (317)
Q Consensus 185 ~~~~~i~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~ 257 (317)
+++.+++++..+.. ..+++.++.+.+++++..++.|++.+++.+++||+++ .+||||.| ..+.+++++++.+
T Consensus 343 l~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~~~~i~lr~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 421 (471)
T PRK11387 343 SVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHFMFRRRHLRDGKALSELAYRAP-WYPLTPILGFVLC 421 (471)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCC-CccHHHHHHHHHH
Confidence 98877665444322 3446778889999999999999999999887776542 24789998 6677777777777
Q ss_pred HHHHHHhhCCCCCCCCCCCccchHHHHHHHHHHHhhheeeeccc
Q 021145 258 CYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARK 301 (317)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 301 (317)
++.++...+. + .. .........+++++...|..++|+
T Consensus 422 ~~~~~~~~~~---~---~~-~~~~~~~~~~~~~~~~~~~~~~~~ 458 (471)
T PRK11387 422 LLACVGLAFD---P---SQ-RIALWCGIPFVALCYGAYYLTQRL 458 (471)
T ss_pred HHHHHHHHhh---H---HH-HHHHHHHHHHHHHHHHHHHHhccc
Confidence 6666543211 1 11 122334445555566666555554
No 12
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=7.6e-33 Score=265.68 Aligned_cols=221 Identities=17% Similarity=0.136 Sum_probs=181.2
Q ss_pred HHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhh---hcCCCcccCCc
Q 021145 33 YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYL---YDKSNETAGAF 109 (317)
Q Consensus 33 ~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~---~~~~~~~~~~p 109 (317)
.+++.+....+|+|.|||.+++.+||+|||+||+|||+..++..+.++|++...+....+ ++++. .+...+..+.|
T Consensus 205 ~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~v-p~~~~~~~~~~~~~~~~sp 283 (489)
T PRK10836 205 AAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLII-PYTDPSLLRNDVKDISVSP 283 (489)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHheec-CCCChhhhccccccccCCc
Confidence 356666666789999999999999999999999999999999999999999999988888 44332 22111111346
Q ss_pred hHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHH
Q 021145 110 VPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAA 189 (317)
Q Consensus 110 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~ 189 (317)
+...+.+. |.++...++.+.++++.+++.|+.+++.+|+++++||||.+| ++|+|+| |+|+|++|++++.+
T Consensus 284 -~~~~~~~~-----g~~~~~~ii~~~il~a~~~~~n~~~~~~sR~l~a~Ardg~lP--~~~~kv~-~~~~P~~All~~~~ 354 (489)
T PRK10836 284 -FTLVFQHA-----GLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAP--RIFAKLS-RGGVPRNALYATTV 354 (489)
T ss_pred -HHHHHHHc-----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC--HHHHhhC-CCCCcHHHHHHHHH
Confidence 66666554 556678899999999999999999999999999999999999 9999999 77999999999999
Q ss_pred HHHHHHhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----cCc-CCCcccCCchhHHHHHHHHHHHHHHH
Q 021145 190 ICIILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQ-----KFN-AGPFYLGKASRPICLIAFLWICYTCS 262 (317)
Q Consensus 190 i~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~ 262 (317)
++.+..+.. .++...++++.+++++..++.|...+++.+++||+ ++. +||||.| ..+..++++++.+++.+.
T Consensus 355 ~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~l~~R~~~~~~~~~~~~~p~~~p-~~p~~~~~~~~~~~~~~~ 433 (489)
T PRK10836 355 IAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAISHYRFRRGYVLQGHDLNDLPYRSG-FFPLGPIFAFVLCLIITL 433 (489)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCC-CccHHHHHHHHHHHHHHH
Confidence 988777643 44466788999999999999999999999988874 222 4799998 677888888888777765
Q ss_pred Hh
Q 021145 263 VF 264 (317)
Q Consensus 263 ~~ 264 (317)
..
T Consensus 434 ~~ 435 (489)
T PRK10836 434 GQ 435 (489)
T ss_pred HH
Confidence 43
No 13
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=6e-33 Score=265.07 Aligned_cols=229 Identities=15% Similarity=0.196 Sum_probs=188.6
Q ss_pred CCCCCCCCch-HHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcC
Q 021145 23 PEATGISSKP-YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDK 101 (317)
Q Consensus 23 ~~~~~~~~~~-~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~ 101 (317)
.+.++|.+++ .+++.++...+|+|.|+|.+++++||+|||+||+||++..+.+.+.++|++.+....... |++++.+.
T Consensus 200 ~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~-~~~~~~~~ 278 (469)
T PRK11049 200 WNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVT-PWSSVVPD 278 (469)
T ss_pred CCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeec-CccccCcc
Confidence 3444443333 369999999999999999999999999999999999999888899999999999888777 77777554
Q ss_pred CCcccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChH
Q 021145 102 SNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPS 181 (317)
Q Consensus 102 ~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~ 181 (317)
++ | +.+.+.+. |.++...++.+..+++.+++.|+.+.+.+|++++++|||.+| ++|+|+| |+|+|+
T Consensus 279 ~~-----p-~~~~~~~~-----g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP--~~~~kv~-~~~tP~ 344 (469)
T PRK11049 279 KS-----P-FVELFVLV-----GLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAP--KAFAKLS-KRAVPA 344 (469)
T ss_pred CC-----c-HHHHHHHc-----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--HHHHhhC-CCCCCH
Confidence 43 6 76766544 667788899999999999999999999999999999999999 9999999 569999
Q ss_pred HHHHHHHHHHHHHHh-hhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc---CCCcccCCchhHHHHHHHH
Q 021145 182 NAVWLCAAICIILGL-PILKV--NVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFN---AGPFYLGKASRPICLIAFL 255 (317)
Q Consensus 182 ~a~~~~~~i~~~~~~-~~~~~--~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~ 255 (317)
+++++++++..+..+ ....+ .+.++.+.+++++...+.|.+++.+.+++||++++ ++|||.| .+++.++++++
T Consensus 345 ~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~p~~~~~~pf~~p-~~~~~~~~~~~ 423 (469)
T PRK11049 345 KGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVYRKQRPHLHEKSIYKMP-LGKLMCWVCMA 423 (469)
T ss_pred HHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccCc-CcchHHHHHHH
Confidence 999999887654332 22222 35789999999999999999999999977776433 2689998 78888988888
Q ss_pred HHHHHHHHhhCC
Q 021145 256 WICYTCSVFLLP 267 (317)
Q Consensus 256 ~~~~~~~~~~~~ 267 (317)
.+++.++....+
T Consensus 424 ~~~~~~~~~~~~ 435 (469)
T PRK11049 424 FFAFVLVLLTLE 435 (469)
T ss_pred HHHHHHHHHHHc
Confidence 888887665544
No 14
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=1.1e-32 Score=267.13 Aligned_cols=246 Identities=17% Similarity=0.190 Sum_probs=205.7
Q ss_pred CCCCCch-HHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCc
Q 021145 26 TGISSKP-YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNE 104 (317)
Q Consensus 26 ~~~~~~~-~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~ 104 (317)
++|.+.+ .+++.++..++|+|.|||.+++++||+|||+||+||+++.++.+++++|+++++++.... +++++ +.+.
T Consensus 223 ~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~v-p~~~l-~~~~- 299 (557)
T TIGR00906 223 GGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMM-PYYLL-DPDA- 299 (557)
T ss_pred CCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccc-cHHHh-CcCc-
Confidence 3454433 468999999999999999999999999999999999999999999999999999999998 67665 3332
Q ss_pred ccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHH
Q 021145 105 TAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAV 184 (317)
Q Consensus 105 ~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~ 184 (317)
| +.+.+.+. |.++...++.++.+.+.++++++.+++.+|++++|||||.+| ++|+|+|||+++|++++
T Consensus 300 ----p-~~~a~~~~-----g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP--~~fakv~~r~~tP~~Ai 367 (557)
T TIGR00906 300 ----P-FPVAFEYV-----GWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLF--KWLAQINSKTKTPINAT 367 (557)
T ss_pred ----H-HHHHHHHc-----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc--HHHhccCCCCCCcHHHH
Confidence 5 66655543 667788899999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc------------------------------
Q 021145 185 WLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK------------------------------ 234 (317)
Q Consensus 185 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~------------------------------ 234 (317)
++.++++.++.++. .++.+.++.+++.++.|.+.+++.+++|+++
T Consensus 368 l~~~iv~~il~~~~-----~~~~l~~l~sig~ll~y~lv~~~~l~lR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (557)
T TIGR00906 368 VVSGAIAALMAFLF-----DLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQAKDTDEKDTLDSWVPFTSKSESQS 442 (557)
T ss_pred HHHHHHHHHHHHHc-----CHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccc
Confidence 99999998776622 3567888888899999999998888777432
Q ss_pred -------------------------------------------------------Cc--CCCcccCCchhHHHHHHHHHH
Q 021145 235 -------------------------------------------------------FN--AGPFYLGKASRPICLIAFLWI 257 (317)
Q Consensus 235 -------------------------------------------------------~~--~~~~~~~~~~~~i~~~~~~~~ 257 (317)
+. +|+||.| ..|.++.++...+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p-~~p~~p~~~i~~~ 521 (557)
T TIGR00906 443 EGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVVLTIWRQPQNKQKVAFKVP-LVPFLPALSILIN 521 (557)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCC-CchHHHHHHHHHH
Confidence 11 5678888 7788888888888
Q ss_pred HHHHHHhhCCCCCCCCCCCccchHHHHHHHHHHHhhheeeeccceec
Q 021145 258 CYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFT 304 (317)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 304 (317)
++++.-. + ..++..+.+|..+|.+.|+.|.+||.+
T Consensus 522 ~~l~~~l--------~----~~~~~~~~~w~~~g~~~y~~yg~~~s~ 556 (557)
T TIGR00906 522 IFLMVQL--------D----ADTWVRFAIWMAIGFLIYFLYGIRHSL 556 (557)
T ss_pred HHHHHcC--------C----HHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 8875433 1 136689999999999999999988765
No 15
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=1.6e-32 Score=261.21 Aligned_cols=263 Identities=15% Similarity=0.099 Sum_probs=202.3
Q ss_pred cccceeeccCCCCCCCC-chHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 021145 14 YVFTHFEMSPEATGISS-KPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSI 92 (317)
Q Consensus 14 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~ 92 (317)
..|+++ .+.+++.+ +..++..++...+|+|.|+|.+++.+||+|||+||+|||+..+...+.++|++..++....+
T Consensus 183 ~~~~~~---~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~ 259 (461)
T PRK10746 183 IGFSNL---TEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIF 259 (461)
T ss_pred Cccccc---cCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeee
Confidence 346666 44444433 34578899999999999999999999999999999999999999999999999988888888
Q ss_pred cCchhhhcCCCcccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCcccccee
Q 021145 93 QDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQ 172 (317)
Q Consensus 93 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~ 172 (317)
|++++..++ .| +.+.+.+. |.+....++.+.++.+.+++.|+.+++.||+++++||||.+| ++|+|
T Consensus 260 -p~~~~~~~~-----sp-~v~~~~~~-----g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP--~~~~~ 325 (461)
T PRK10746 260 -PWNEIGSNG-----SP-FVLTFAKI-----GITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLP--AAMAK 325 (461)
T ss_pred -CCCCCCCCC-----Cc-HHHHHHHh-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC--HHHHH
Confidence 777775433 37 87777665 666677889999999999999999999999999999999999 99999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHhh---hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC---cCCCcccCCch
Q 021145 173 LHPKHKVPSNAVWLCAAICIILGLP---ILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKF---NAGPFYLGKAS 246 (317)
Q Consensus 173 ~~~r~~~P~~a~~~~~~i~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~---~~~~~~~~~~~ 246 (317)
+| |+|+|++++++..+...+.... .....+.++.+.+++++..++.|...+++.+++||+++ +++|||.| +.
T Consensus 326 ~~-~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~~~~~~~~~~~~~-~~ 403 (461)
T PRK10746 326 VS-RHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHKAAIASHPFRSI-LF 403 (461)
T ss_pred hC-CCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcCC-Cc
Confidence 99 8899999999876544332211 12236679999999999999999999999998887654 36789977 77
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCCCCCCCCccchHHHHHHHHHHHhhheeeeccce
Q 021145 247 RPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKW 302 (317)
Q Consensus 247 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 302 (317)
+...+++++.+++..+...+..+ . .........++++..+.|..+++.+
T Consensus 404 p~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~y~~~~~~~ 452 (461)
T PRK10746 404 PWANYLTMAFLICVLIGMYFNED------T-RMSLFVGIIFLLAVTLIYKVFGLNR 452 (461)
T ss_pred cHHHHHHHHHHHHHHHHHHHCcc------H-HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 78888877777776555432111 0 1122344444555556665544433
No 16
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=3.1e-32 Score=259.49 Aligned_cols=251 Identities=14% Similarity=0.149 Sum_probs=201.4
Q ss_pred CCCCCchHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcc
Q 021145 26 TGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNET 105 (317)
Q Consensus 26 ~~~~~~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~ 105 (317)
+.|+++..+++.++..++|+|.|+|.+++.+||+|||+||+|||+..+...+.++|++..+...... |++++...+
T Consensus 192 ~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~-p~~~i~~~~--- 267 (457)
T PRK10580 192 GFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIY-PWNQVGTNG--- 267 (457)
T ss_pred CCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheec-ccCCCCccC---
Confidence 3454444578999999999999999999999999999999999999999999999999988887777 677765433
Q ss_pred cCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHH
Q 021145 106 AGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVW 185 (317)
Q Consensus 106 ~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~ 185 (317)
.| +...+. .. |.++...++.+..+.+.+++.|+++.+.+|+++++||||.+| ++|+|+| |+|+|+++++
T Consensus 268 --~p-~~~~~~-~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP--~~~~kv~-~~~~P~~Ai~ 336 (457)
T PRK10580 268 --SP-FVLTFQ-HM----GITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAP--KIFSKTS-RRGIPWVTVL 336 (457)
T ss_pred --Ch-HHHHHH-Hc----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC--HHHHhhC-CCCCcHHHHH
Confidence 36 655553 33 666777888888899999999999999999999999999999 9999999 6899999999
Q ss_pred HHHHHHHHHHhh-hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----CcCCCcccCCchhHHHHHHHHHHHHH
Q 021145 186 LCAAICIILGLP-ILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK----FNAGPFYLGKASRPICLIAFLWICYT 260 (317)
Q Consensus 186 ~~~~i~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~ 260 (317)
++.++..+.... ...+.+.++.+.+++++..++.|.+++.+.+++||+. .+++|||.| .++..++++++++++.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~lr~~~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~ 415 (457)
T PRK10580 337 VMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKFKVP-GGVATTIGGLIFLVFI 415 (457)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccC-CccHHHHHHHHHHHHH
Confidence 998765543332 2344677899999999999999999999999888763 234689998 8899999999999888
Q ss_pred HHHh-hCCCCCCCCCCCccchHHHHHHHHHHHhhheeeecc
Q 021145 261 CSVF-LLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDAR 300 (317)
Q Consensus 261 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 300 (317)
+... ++|. ..........+++++.+.|..++|
T Consensus 416 ~~~~~~~p~--------~~~~~~~~~~~~~~~~~~y~~~~~ 448 (457)
T PRK10580 416 IGLIGYHPD--------TRISLYVGFAWIVLLLIGWMFKRR 448 (457)
T ss_pred HHHHHHCcc--------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7665 4331 123445666667777777766543
No 17
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=2.1e-32 Score=260.32 Aligned_cols=228 Identities=16% Similarity=0.169 Sum_probs=193.3
Q ss_pred CCCCCCCch-HHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCC
Q 021145 24 EATGISSKP-YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKS 102 (317)
Q Consensus 24 ~~~~~~~~~-~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~ 102 (317)
+.++|.+++ .++..++...+|+|.|+|.+++.+||+|||+||+|||+..++..+.+.|++......... |++++.+++
T Consensus 190 ~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~-p~~~l~~~~ 268 (456)
T PRK10238 190 DQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLM-PWTRVTADT 268 (456)
T ss_pred CCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheec-ChhccCCCC
Confidence 345674433 367788888999999999999999999999999999999999999999998877777666 777774433
Q ss_pred CcccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHH
Q 021145 103 NETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSN 182 (317)
Q Consensus 103 ~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~ 182 (317)
.| +.+.+.+. |.++...++...++.+.+++.|+++++.+|+++++||||.+| ++|+|+| |+|+|++
T Consensus 269 -----sP-~~~~~~~~-----g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP--~~f~kv~-~~~~P~~ 334 (456)
T PRK10238 269 -----SP-FVLIFHEL-----GDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAP--KALASVD-KRGVPVN 334 (456)
T ss_pred -----Cc-HHHHHHHc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHhhC-cCCCcHH
Confidence 37 77776655 667788889999999999999999999999999999999999 9999999 6799999
Q ss_pred HHHHHHHHHHHHHhh-hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc---CCCcccCCchhHHHHHHHHHHH
Q 021145 183 AVWLCAAICIILGLP-ILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFN---AGPFYLGKASRPICLIAFLWIC 258 (317)
Q Consensus 183 a~~~~~~i~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~ 258 (317)
|++++.+++.+..+. +..+.+.++.+.++++...++.|.+++.+.+++||++++ +++|+.| +++..++++++++.
T Consensus 335 Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~ 413 (456)
T PRK10238 335 TILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKQEQGVVTRFPAL-LYPLGNWICLLFMA 413 (456)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCC-CccHHHHHHHHHHH
Confidence 999999998877665 356688999999999999999999999999988876543 3455655 89999999999999
Q ss_pred HHHHHhhCC
Q 021145 259 YTCSVFLLP 267 (317)
Q Consensus 259 ~~~~~~~~~ 267 (317)
+.++..++.
T Consensus 414 ~~~~~~~~~ 422 (456)
T PRK10238 414 AVLVIMLMT 422 (456)
T ss_pred HHHHHHHHc
Confidence 998877553
No 18
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=5.9e-32 Score=257.36 Aligned_cols=262 Identities=17% Similarity=0.177 Sum_probs=203.9
Q ss_pred ccceeeccCCCCCCCCch-HHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021145 15 VFTHFEMSPEATGISSKP-YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQ 93 (317)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~ 93 (317)
.++++ .+.++|.+++ .++..++...+|+|.|+|.+++++||+|||+||+|||+..+...+.++|++.........
T Consensus 185 ~~~~~---~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~- 260 (452)
T TIGR01773 185 GFSNL---TGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRATNSVIWRIIVFYLGSIFIVVALL- 260 (452)
T ss_pred ccccc---cCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEe-
Confidence 34555 4445554444 469999999999999999999999999999999999999999999999999888777777
Q ss_pred CchhhhcCCCcccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceec
Q 021145 94 DFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQL 173 (317)
Q Consensus 94 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~ 173 (317)
|+++....+. .| +.+...+. |+++...++.+..+++.+++.|+.+++.+|.++++||||.+| ++|+|+
T Consensus 261 p~~~~~~~~~----~p-~~~~~~~~-----g~~~~~~ii~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lP--~~~~~v 328 (452)
T TIGR01773 261 PWNSPNLLEV----GS-YVAVLELL-----GIPHAKLIMDFVVLTAVLSCLNSALYTTSRMLYSLAERGDAP--RVFMKL 328 (452)
T ss_pred CCCCcccccC----Cc-HHHHHHHc-----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC--HHHHhh
Confidence 4443321111 15 65554433 667788888899999999999999999999999999999999 999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcCCCcccCC-chhHHH
Q 021145 174 HPKHKVPSNAVWLCAAICIILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK-FNAGPFYLGK-ASRPIC 250 (317)
Q Consensus 174 ~~r~~~P~~a~~~~~~i~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~i~ 250 (317)
| |+++|+++++++.+++.+..++. ..+++.++.+.+.++...++.|.+.+.+.+++||+. +.+|||+.+. .++.++
T Consensus 329 ~-~~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~i~~r~~~~~~~~~~~~~~~~~p~~~ 407 (452)
T TIGR01773 329 N-KKGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAVSQLRMRKKLKANGEAIKIRMWLYPWLT 407 (452)
T ss_pred C-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCCccHHH
Confidence 9 78999999999999988776653 234678899999999899999999999988777664 3356666654 478888
Q ss_pred HHHHHHHHHHHHHhh-CCCCCCCCCCCccchHHHHHHHHHHHhhheeeeccc
Q 021145 251 LIAFLWICYTCSVFL-LPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARK 301 (317)
Q Consensus 251 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 301 (317)
+++++.+++.++... .|. ..+.......+.+....+|+.++||
T Consensus 408 ~~~~~~~~~~~~~~~~~p~--------~~~~~~~~~~~~~~~~~~y~~~~~~ 451 (452)
T TIGR01773 408 WLVIIFICGILVSMLFIPS--------MRDEVLLTGLLTIIVLCSYLVFARR 451 (452)
T ss_pred HHHHHHHHHHHHHHHHccc--------ccHHHHHHHHHHHHHHHHHHHhhcc
Confidence 888888888877763 332 1244556666666666667665554
No 19
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=6.8e-32 Score=256.01 Aligned_cols=241 Identities=15% Similarity=0.120 Sum_probs=189.6
Q ss_pred HHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHH
Q 021145 33 YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPA 112 (317)
Q Consensus 33 ~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 112 (317)
.++..++...+|+|.|||.+++++||+|||+||+|||+..+..+++++|++.+.+..... |.+++.+++. | +.
T Consensus 189 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~Y~l~~~~~~~~~-~~~~l~~~~~-----p-~~ 261 (438)
T PRK10655 189 SAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAAVIYIVSTNVIAGIV-PNMELANSTA-----P-FG 261 (438)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHhhccc-----h-HH
Confidence 467888999999999999999999999999999999999999999999999988888887 6777755443 6 77
Q ss_pred HHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHHH
Q 021145 113 QILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICI 192 (317)
Q Consensus 113 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~ 192 (317)
+.+.+.+ +++...++.+..+++.+++.++++.+.+|++++++|||.+| ++|+|+| |+++|+++++++.+++.
T Consensus 262 ~~~~~~~-----g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg~lP--~~~~~v~-~~~tP~~all~~~~i~~ 333 (438)
T PRK10655 262 LAFAQMF-----NPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFP--KIFSRVT-KVDAPVQGMLIIVVIQS 333 (438)
T ss_pred HHHHHHc-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh--HHHHhhC-cCCCCHHHHHHHHHHHH
Confidence 7777765 45567788888899999999999999999999999999999 9999999 77999999999999887
Q ss_pred HHHhhhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcCCCcccCCchhHHHHHHHHHHHHHHHHhhCCCC
Q 021145 193 ILGLPILKV--NVVFTAITSICTIGWVGGYAVPIFARMVMAEQK-FNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTF 269 (317)
Q Consensus 193 ~~~~~~~~~--~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 269 (317)
++.+....+ .+.++.+.++.++...+.|.+++++.+++|||+ +.+||||.+ ..++.++.+.+++.....
T Consensus 334 ~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----- 405 (438)
T PRK10655 334 LLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVPPSKAKVA---NFIAFVGALYSFYALYSS----- 405 (438)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHH---HHHHHHHHHHHHHHHHHh-----
Confidence 766543322 467999999999999999999999998777654 446777754 355555555554432211
Q ss_pred CCCCCCCccchHHHHHHHHHHHhhheeeecccee
Q 021145 270 YPISWDTFNYAPVALGVGLGLIMLWWLLDARKWF 303 (317)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 303 (317)
.. .......++++++..+|.+++||+.
T Consensus 406 ------~~-~~~~~~~~~~~~g~~~y~~~~~~~~ 432 (438)
T PRK10655 406 ------GE-EAMLYGSIVTFLGWTLYGLISPRFE 432 (438)
T ss_pred ------hH-HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 00 1223345666667777755444443
No 20
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=3.1e-31 Score=251.71 Aligned_cols=222 Identities=19% Similarity=0.130 Sum_probs=186.3
Q ss_pred hHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchH
Q 021145 32 PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVP 111 (317)
Q Consensus 32 ~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 111 (317)
..++..++...+|+|.|+|.+++.+||+|||+||+|||+..+...+.++|++..++....+ |+++. +.+. ..+ +
T Consensus 180 ~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil~~~~~~~~~-p~~~~-~~~~---~~~-~ 253 (446)
T PRK10197 180 FGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIFVVVALI-PWNMP-GLKA---VGS-Y 253 (446)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHheec-CcCcc-cccc---cCc-H
Confidence 3479999999999999999999999999999999999999999999999999999988888 56543 2211 113 4
Q ss_pred HHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHH
Q 021145 112 AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAIC 191 (317)
Q Consensus 112 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~ 191 (317)
....+.. |+++...++.+.++++.+++.|+++++.+|+++++||||.+| ++|+|+| |+|+|+++++++.+++
T Consensus 254 ~~~~~~~-----g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP--~~~~~~~-~~~~P~~Ail~~~~~~ 325 (446)
T PRK10197 254 RSVLELL-----NIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAP--AVMGKIN-RSKTPYVAVLLSTGAA 325 (446)
T ss_pred HHHHHHc-----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC--HHHHhhC-cCCCcHHHHHHHHHHH
Confidence 3434333 677788999999999999999999999999999999999999 9999999 8899999999998887
Q ss_pred HHHHhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--c-CcCCCcccCCchhHHHHHHHHHHHHHHHHhhCC
Q 021145 192 IILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQ--K-FNAGPFYLGKASRPICLIAFLWICYTCSVFLLP 267 (317)
Q Consensus 192 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 267 (317)
.+..+.. ..+.+.++.+.++++...++.|.+.+.+.+++||+ + +.+++||.| +++..++++++++++.++...++
T Consensus 326 ~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~~~~~~~~~~~~~-~~p~~~~~~i~~~~~~~~~~~~~ 404 (446)
T PRK10197 326 FLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILRAEGSEIRLRMW-LYPWLTWLVIGFITFVLVVMLFR 404 (446)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCC-CcchHHHHHHHHHHHHHHHHHHC
Confidence 7665543 23356799999999999999999999999988875 2 336788887 78899999999888888776655
Q ss_pred C
Q 021145 268 T 268 (317)
Q Consensus 268 ~ 268 (317)
+
T Consensus 405 ~ 405 (446)
T PRK10197 405 P 405 (446)
T ss_pred c
Confidence 3
No 21
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=4.1e-31 Score=251.08 Aligned_cols=212 Identities=18% Similarity=0.146 Sum_probs=178.9
Q ss_pred hHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchH
Q 021145 32 PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVP 111 (317)
Q Consensus 32 ~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 111 (317)
..++..++...+|+|.|+|.+++++||+|||+||+|||++.++.+++++|++..++....+ +.+++..++. | +
T Consensus 190 ~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~v~Y~l~~~~~~~~~-~~~~l~~~~~-----p-~ 262 (445)
T PRK10644 190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSSTAIMGMI-PNAALRVSAS-----P-F 262 (445)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHhcCCC-----h-H
Confidence 3467788899999999999999999999999999999999999999999999999999888 6667654433 7 7
Q ss_pred HHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHH
Q 021145 112 AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAIC 191 (317)
Q Consensus 112 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~ 191 (317)
.+.+++.+ +++...++.++.+++.+++.++++...+|.+++++|||.+| ++|+|+| |+++|+++++++++++
T Consensus 263 ~~~~~~~~-----g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ardg~lP--~~~~~v~-~~~tP~~Ai~~~~~i~ 334 (445)
T PRK10644 263 GDAARMAL-----GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFP--PIFARVN-KAGTPVAGLLIVGVLM 334 (445)
T ss_pred HHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHhhC-cCCCCHHHHHHHHHHH
Confidence 78777775 35567788888889999999999999999999999999999 9999999 6799999999999998
Q ss_pred HHHHhhhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCCCcccCCchhHHHHHHHHHHHHHHH
Q 021145 192 IILGLPILKV--NVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCS 262 (317)
Q Consensus 192 ~~~~~~~~~~--~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 262 (317)
.++.+....+ .+.++.+.+++++..++.|.+++.+.+++|||+++ ++.| ..+.+++++++.+++.+.
T Consensus 335 ~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~---~~~p-~~~~~~~~~~~~~~~~~~ 403 (445)
T PRK10644 335 TIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFG---KARP-AYLAVTLIAFVYCIWAVV 403 (445)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc---cccc-chhHHHHHHHHHHHHHHH
Confidence 8766543322 35799999999999999999999999877776543 1223 456788888888887764
No 22
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=2e-31 Score=252.41 Aligned_cols=243 Identities=15% Similarity=0.091 Sum_probs=194.8
Q ss_pred chHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCch
Q 021145 31 KPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFV 110 (317)
Q Consensus 31 ~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~ 110 (317)
+..++..++..++|+|.|+|.+++.+||+|||+||+|||+..+..++.++|++.+++....+ |++++.+++. |
T Consensus 185 ~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~ilYil~~~~~~~~~-p~~~~~~~~~-----p- 257 (435)
T PRK10435 185 DGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIIYIAATQVISGMF-PASVMAASGA-----P- 257 (435)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHhcCCC-----c-
Confidence 35679999999999999999999999999999999999999999999999999999999888 7888755444 7
Q ss_pred HHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHH
Q 021145 111 PAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAI 190 (317)
Q Consensus 111 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i 190 (317)
+.+.+++. ++++...+++++.+++.+++.|++++..+|..++++|||.+| |+|+|+| |+|+|++++++++++
T Consensus 258 ~~~~~~~~-----~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~lP--~~f~k~n-k~g~P~~Al~~~~~~ 329 (435)
T PRK10435 258 FAISASTI-----LGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNFP--KVYGEVD-KNGIPKKGLLLAAVK 329 (435)
T ss_pred HHHHHHHH-----hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHhhC-cCCCCHHHHHHHHHH
Confidence 87777666 467788888988999999999999999999999999999999 9999999 889999999999888
Q ss_pred HHHHHhhh----cc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCCCcccCCchhHHHHHHHHHHHHHHHH
Q 021145 191 CIILGLPI----LK---VNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSV 263 (317)
Q Consensus 191 ~~~~~~~~----~~---~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 263 (317)
+.++.... .. ..+.++.+.++++...++.|++.+.+.+++||++ +|.+ ..+.++.++++++++.+..
T Consensus 330 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ir~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~ 403 (435)
T PRK10435 330 MTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFEGVN-----IRNF-VSLICSVLGCVFCFIALMG 403 (435)
T ss_pred HHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----hhHH-HHHHHHHHHHHHHHHHHHH
Confidence 76544321 11 2578999999999999999999999988554422 2222 3456677776666665431
Q ss_pred hhCCCCCCCCCCCccchHHHHHHHHHHHhhheeeeccceecCCccc
Q 021145 264 FLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRN 309 (317)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 309 (317)
. .+..+..++.++.+.|+.|.|||++++.++
T Consensus 404 ~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (435)
T PRK10435 404 A---------------SSFELAGTFIVSLIILMFYARKMHERQSHS 434 (435)
T ss_pred h---------------hHHHHHHHHHHHHHHHHHHHHHhcchhccc
Confidence 1 224555666666666667777777665543
No 23
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-32 Score=247.20 Aligned_cols=266 Identities=17% Similarity=0.182 Sum_probs=225.0
Q ss_pred ccccceeeccCCCCCCCCchH-HHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021145 13 SYVFTHFEMSPEATGISSKPY-AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFS 91 (317)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~ 91 (317)
+..+++. .+++||.|.++ +++.++...+|+|.|.|.++..++|+|||+|.+|||+-..+..+.++|+....+...+
T Consensus 185 ~~g~snl---~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l 261 (462)
T COG1113 185 AAGFSNL---WDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKAINSVIWRILIFYVGSLFVILSL 261 (462)
T ss_pred Ccccccc---ccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHHHhhhhHHHHHHHHHHHHHHhee
Confidence 5678887 77888666555 8999999999999999999999999999999999999999999999999999999989
Q ss_pred ccCchhhhcCCCcccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccce
Q 021145 92 IQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWR 171 (317)
Q Consensus 92 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~ 171 (317)
. ||+++...++ | +...+... |-++...++++.++.+.+++.|+.+++.+|++|++|+||..| |.++
T Consensus 262 ~-PW~~~~~~~S-----P-FV~~f~~i-----Gi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~AP--k~~~ 327 (462)
T COG1113 262 Y-PWNQIGEDGS-----P-FVTVFSLI-----GIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAP--KAFA 327 (462)
T ss_pred c-cccccCCCCC-----c-HHHHHHHc-----CCcccccceeEEEeechhhcccccccccchHHHHHhhcCccc--HhHh
Confidence 8 8998866554 8 88888776 888899999999999999999999999999999999999999 9999
Q ss_pred eccCCCCChHHHHHHHHHHHHHHHhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---CcCCCcccCCchh
Q 021145 172 QLHPKHKVPSNAVWLCAAICIILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK---FNAGPFYLGKASR 247 (317)
Q Consensus 172 ~~~~r~~~P~~a~~~~~~i~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 247 (317)
|+| |+|.|+++++++.+...+.+++. ..+.+.|+.+++.++...+..|.+++++.+++||++ .++.+||+| .++
T Consensus 328 kls-k~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk~~~~~~~~~~fkm~-~~p 405 (462)
T COG1113 328 KLS-KRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLRKAKPAEGKKLKFKMP-LYP 405 (462)
T ss_pred hcc-ccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccCcccccc-ccc
Confidence 999 88999999999998887777654 455899999999999999999999999999888743 235578998 888
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCCCCCccchHHHHHHHHHHHhhheeeeccceec
Q 021145 248 PICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFT 304 (317)
Q Consensus 248 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 304 (317)
..+++.++..++..+...+.. +....+....+++++..++|..++||+++
T Consensus 406 ~~~~l~l~fl~~vlv~m~~~~-------~t~~~~~~~~~~~~~l~i~~~~~~~~~~~ 455 (462)
T COG1113 406 FTNYLTLAFLAFVLVLMLFDP-------DTRISLLVGPVWLVLLGIGYLVKRKKKAR 455 (462)
T ss_pred HHHHHHHHHHHHHHHHHHcCc-------ccchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 888888888888877765432 12234466666666666666565544443
No 24
>TIGR00909 2A0306 amino acid transporter.
Probab=99.98 E-value=5.1e-31 Score=249.41 Aligned_cols=234 Identities=17% Similarity=0.202 Sum_probs=193.0
Q ss_pred hHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchH
Q 021145 32 PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVP 111 (317)
Q Consensus 32 ~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 111 (317)
..++..++...+|+|.|+|.+++++||+|||+||+||++..+..++.++|++.+.+..... |.+++.+++. | +
T Consensus 194 ~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~~v~Yil~~~~~~~~~-~~~~~~~~~~-----~-~ 266 (429)
T TIGR00909 194 FGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVVTLLYVLVAAVILGAV-PWRQLAGSTA-----P-L 266 (429)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhcCc-CHHHhCCCCc-----H-H
Confidence 3468899999999999999999999999999999999999999999999999998888877 7777755443 6 6
Q ss_pred HHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHH
Q 021145 112 AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAIC 191 (317)
Q Consensus 112 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~ 191 (317)
.+...+. ++++...++.+..+++.+++.++++.+.+|++++++|||.+| ++|+|+|||+++|+++++++.+++
T Consensus 267 ~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP--~~~~~~~~~~~~P~~a~~~~~~i~ 339 (429)
T TIGR00909 267 SLVGYDL-----GQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLP--GSLSKVHPKTGTPHMSIIIFSLTA 339 (429)
T ss_pred HHHHHHh-----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--HHHHHcCCCCCCcHHHHHHHHHHH
Confidence 6666554 567788899999999999999999999999999999999999 999999999999999999999888
Q ss_pred HHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcCCCcccCCchhHHHHHHHHHHHHHHHHhhCCCCC
Q 021145 192 IILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK-FNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFY 270 (317)
Q Consensus 192 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 270 (317)
.++.. . ..++.+.++.++..++.|.+.+++.+++|||+ +.+||||.| ..+.++.+..+.+.+.....
T Consensus 340 ~~~~~--~---~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------ 407 (429)
T TIGR00909 340 ALLAS--L---VPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPDIQRAFRCP-LVPVLPVLVVSYCIYLLLNL------ 407 (429)
T ss_pred HHHHH--H---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC-cchHHHHHHHHHHHHHHHHc------
Confidence 87654 2 23678889999999999999999988777655 447899998 66677666665555543221
Q ss_pred CCCCCCccchHHHHHHHHHHHhhheee
Q 021145 271 PISWDTFNYAPVALGVGLGLIMLWWLL 297 (317)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~v~~~~ 297 (317)
++ .......++..+|..+|.+
T Consensus 408 -----~~-~~~~~~~~~~~~g~~~y~~ 428 (429)
T TIGR00909 408 -----GP-GTTVWFLVWMLLGSVFYFI 428 (429)
T ss_pred -----cH-HHHHHHHHHHHHHHHHHHc
Confidence 11 2335667777778777754
No 25
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.98 E-value=6.2e-31 Score=243.83 Aligned_cols=256 Identities=15% Similarity=0.166 Sum_probs=213.2
Q ss_pred ccccCCccCcccccceeeccCCCCCCCCchHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHH
Q 021145 3 PLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGW 82 (317)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yi 82 (317)
+.++..+.++...++.+ .+++.|.++..++...+..+-|+|.|-|.+...++|.|||+|++|||+.-..-.+.++|+
T Consensus 207 ~~~Gg~~~~~~ig~~yw---~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik~vfwRIl~FYi 283 (541)
T COG0833 207 IICGGGPTHGYIGFNYW---HDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIKQVFWRILLFYI 283 (541)
T ss_pred HhcCCCCCCCCcceeee---cCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHHHHHHHHHHHHHH
Confidence 34555555555566667 777888888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCch--hhhcCC-CcccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 021145 83 ALILALCFSIQDFS--YLYDKS-NETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALS 159 (317)
Q Consensus 83 l~~~~~~~~~~~~~--~~~~~~-~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 159 (317)
+..+.+...+| ++ ++.+++ .+....| +...+++. |-+..+.+++..++.+.+++.|+.+++.||++++||
T Consensus 284 ~si~~ig~lvP-y~dp~Ll~~~~~~~~~SP-Fvia~~~~-----Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA 356 (541)
T COG0833 284 LSIFVIGLLVP-YNDPRLLGNSSSGVAASP-FVIAIKNA-----GIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLA 356 (541)
T ss_pred HHHHHheEEcc-CCCcccccCCcCCccCCC-hhHhHHhc-----CCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 99999999995 32 333322 2222348 77777665 778899999999999999999999999999999999
Q ss_pred cCCCCCccccceeccCCCCChHHHHHHHHHHHHHHHhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----
Q 021145 160 RDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK---- 234 (317)
Q Consensus 160 ~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~---- 234 (317)
+||..| |+|+|+| |+|.|.+|++++.+++++..+-. ....+.|+++.+++.+..++.++.++++.++.||.-
T Consensus 357 ~~g~AP--k~f~~~~-r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~shirFR~A~~~QG 433 (541)
T COG0833 357 KQGKAP--KIFAKVD-RRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSHIRFRRAMKAQG 433 (541)
T ss_pred hcCCCc--hHHHhhC-CCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999 9999999 88999999999999988776643 333569999999999999999999999999888641
Q ss_pred --CcCCCcccCCchhHHHHHHHHHHHHHHHHhhCCCCCCC
Q 021145 235 --FNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPI 272 (317)
Q Consensus 235 --~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 272 (317)
.++-|||.| .++..++.+++.+++.++...+....|.
T Consensus 434 ~s~~~L~yks~-~~p~g~~~~~~~~~li~i~q~y~af~p~ 472 (541)
T COG0833 434 RSLDELPYKSP-FGPYGPIYGLILCILILIGQGYVAFFPI 472 (541)
T ss_pred CChhhcCccCC-CccHHHHHHHHHHHHHHHHcchheeecC
Confidence 224589998 8888899999998888887665554443
No 26
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.97 E-value=1e-30 Score=241.39 Aligned_cols=205 Identities=17% Similarity=0.182 Sum_probs=178.4
Q ss_pred chHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCch
Q 021145 31 KPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFV 110 (317)
Q Consensus 31 ~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~ 110 (317)
+...+..++...+|+|.|||...+..||+|||+||+|||+.+++.++++.|+++++++..++ ++|++.+++.
T Consensus 202 ~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~Ai~isi~lvt~iYil~NvAy~~vl-s~~e~l~S~a------- 273 (479)
T KOG1287|consen 202 DVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPRAILISIPLVTVIYVLVNVAYFTVL-SPDEILSSDA------- 273 (479)
T ss_pred chHHHHHHHHHhhhcccCchhhccchHhhcCccccchHHHHHhhHHHHHHHHHhHhheeEec-CHHHhcccch-------
Confidence 44568899999999999999999999999999999999999999999999999999999999 8899866654
Q ss_pred HHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHH
Q 021145 111 PAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAI 190 (317)
Q Consensus 111 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i 190 (317)
++..+.+.. +|.+. +.+-+.+.++.+|++|+.+++.||+++++||||++| +.|+..|+|+.||..++++++++
T Consensus 274 Vav~Fa~~~----~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP--~~~s~i~~~~~TP~~allf~~~~ 346 (479)
T KOG1287|consen 274 VAVTFADRI----LGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLP--AFFSMISVRRFTPRPALLFSGLL 346 (479)
T ss_pred HHHHHHHHh----ccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCcc--HHHHhhcCCCCCChHHHHHHHHH
Confidence 444454443 45554 999999999999999999999999999999999999 99999998888999999999999
Q ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcCCCcccCCchhHHHHHHHH
Q 021145 191 CIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK-FNAGPFYLGKASRPICLIAFL 255 (317)
Q Consensus 191 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~ 255 (317)
+++..+ ...+++++|..++...+.+.+.+++.+++|+|+ +.+||+|.|-..+.+-.+.++
T Consensus 347 ~i~~~~-----~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rPiKvpl~~p~~~~~~~i 407 (479)
T KOG1287|consen 347 SIVLSL-----IGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRPIKVPLFIPILFLLICI 407 (479)
T ss_pred HHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCEeeeeehHHHHHHHHH
Confidence 998887 446899999999999999999999999877665 458999998444444433333
No 27
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.97 E-value=3.7e-30 Score=246.19 Aligned_cols=244 Identities=15% Similarity=0.057 Sum_probs=193.6
Q ss_pred CchHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCc
Q 021145 30 SKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAF 109 (317)
Q Consensus 30 ~~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p 109 (317)
+...++..++...+|+|.|||.+++++||+|| +||+||++..+..+++++|++.+.+..... |.+++.+.+. |
T Consensus 196 ~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~iPrai~~~~~i~~~~Yil~~~~~~~~~-~~~~l~~~~~-----p 268 (473)
T TIGR00905 196 SVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDVGKATVLGTLGALVIYILITLLSLGVL-PQQELANLPN-----P 268 (473)
T ss_pred chHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHHHHhCc-CHHHHhhCCC-----c
Confidence 34457889999999999999999999999999 999999999999999999999999988888 7888866544 4
Q ss_pred hHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHH
Q 021145 110 VPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAA 189 (317)
Q Consensus 110 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~ 189 (317)
...+..++. .+++...++.++.+++.+++.++++.+.+|++++|||||.+| ++|+|+|| +|+|+++++++.+
T Consensus 269 ~~~~~~~~~-----~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amardg~lP--~~~~~v~~-~~tP~~Ai~~~~~ 340 (473)
T TIGR00905 269 SMAAVLEMI-----VGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKDGLFP--KIFGRVNK-NGAPSVALLLTNI 340 (473)
T ss_pred hHHHHHHHH-----hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh--HHHHhhCc-cCCCHHHHHHHHH
Confidence 133445555 356678889999999999999999999999999999999999 99999995 5999999999999
Q ss_pred HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCCCcccCCchhHHHHHHHHHHHHHHHHhhCCCC
Q 021145 190 ICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTF 269 (317)
Q Consensus 190 i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 269 (317)
++.++.++.....+.++++.+++++..++.|.+++++.++.||+++.++ .+.| ++++++.++.+++++......
T Consensus 341 i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~~---- 414 (473)
T TIGR00905 341 LIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVGTYPK-IKNR-KALIVGVIACVYSIWLLYAAG---- 414 (473)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc-cccc-hHHHHHHHHHHHHHHHHHHhh----
Confidence 9887766555557789999999999999999999999988776642111 1223 677888888888877654331
Q ss_pred CCCCCCCccchHHHHHHHHHHHhhheeeeccce
Q 021145 270 YPISWDTFNYAPVALGVGLGLIMLWWLLDARKW 302 (317)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 302 (317)
. .......++++++...|..++|++
T Consensus 415 ----~----~~~~~~~~~~~~g~~~y~~~~~~~ 439 (473)
T TIGR00905 415 ----L----KYLLLGFILYAPGIIFYGRARKER 439 (473)
T ss_pred ----H----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 112334444456666665555444
No 28
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.97 E-value=6.6e-30 Score=245.76 Aligned_cols=267 Identities=15% Similarity=0.159 Sum_probs=198.7
Q ss_pred CCCCchHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCc-c
Q 021145 27 GISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNE-T 105 (317)
Q Consensus 27 ~~~~~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~-~ 105 (317)
+|.+ +.+++.++..++|+|.|+|.+++.+||+||||||+|||+..+..++.++|++..+...... |+++..+.+.. .
T Consensus 206 ~~~~-~~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~-~~~~~~~~~~~~~ 283 (496)
T PRK15238 206 AYQS-PIAVLSFVVFAIFAYGGIEAVGGLVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLWGVST-NWQQVLSNKSVNL 283 (496)
T ss_pred cccc-chHHHHHHHHHHHHHHhHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcC-chhhcCCccccch
Confidence 4533 4678888999999999999999999999999999999999999999999999887777666 66665443210 0
Q ss_pred cCCchHHHHHHHHhcc----cc---------CChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCcccccee
Q 021145 106 AGAFVPAQILYDAFHG----RY---------HNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQ 172 (317)
Q Consensus 106 ~~~p~~~~~~~~~~~~----~~---------g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~ 172 (317)
...| . ...+.++. .. .+++...++.+..+++.+++.+++.++.+|.++..++||.+| ++|+|
T Consensus 284 ~~~~-~--~~~~~~g~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P--~~f~k 358 (496)
T PRK15238 284 GNIT-Y--VLMNNLGYTLGHALGLSPAASLTLGVWFARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWP--KKMTK 358 (496)
T ss_pred hccH-H--HHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCccc--HHHHh
Confidence 0112 1 11111110 00 124556677889999999999999999999999999999999 99999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHhhh-cc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCCCcccC---Cc
Q 021145 173 LHPKHKVPSNAVWLCAAICIILGLPI-LK---VNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLG---KA 245 (317)
Q Consensus 173 ~~~r~~~P~~a~~~~~~i~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~---~~ 245 (317)
+| |+|+|+++++++.+++.++.+.. .+ ..+.|+.+++++++..++.|.+.+.+++++||+++.+|||+.+ .+
T Consensus 359 ~n-k~g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~l~~~~~li~y~~~~~a~i~~r~~~~~~r~~~~~~~~~~ 437 (496)
T PRK15238 359 LN-KNGMPANAMWLQCIIVSVFILLVSFGGDAASAFFNILTLMANVSMTLPYLFLAGAFPFFKKKKDIDRPFVVFKTKKS 437 (496)
T ss_pred hC-cCCCcHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceecCCcce
Confidence 99 89999999999998888665432 33 2455899999999999999999999999888876667887763 25
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCccchHHHHHHHHHHHhhheeeeccceec
Q 021145 246 SRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFT 304 (317)
Q Consensus 246 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 304 (317)
+..++.+.++.+++.....++++.. ..++++....++...++..+.|..|++|+++
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 493 (496)
T PRK15238 438 TLIATIVVVLVVGFANVFTIIQPVI---EGDYQSTFWMIGGPVFFSILAWIIYQNYEKK 493 (496)
T ss_pred ehhHHHHHHHHHHHHHHHheeCCCc---CCCHHHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence 6677777777777766656554422 2346665555555655565656555555443
No 29
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.97 E-value=8.9e-30 Score=245.31 Aligned_cols=199 Identities=14% Similarity=0.131 Sum_probs=163.4
Q ss_pred chHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCch
Q 021145 31 KPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFV 110 (317)
Q Consensus 31 ~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~ 110 (317)
+..++..++..++|+|.|||.+++++||+|||+||+|||+..+..+++++|++.+++....+ |.+++.+++. +
T Consensus 233 ~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~-~~~~l~~~~~-----~- 305 (501)
T TIGR00911 233 SAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVL-SPEELLASLA-----V- 305 (501)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHhcChH-----H-
Confidence 35578889999999999999999999999999999999999999999999999999998888 7777765432 2
Q ss_pred HHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHH
Q 021145 111 PAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAI 190 (317)
Q Consensus 111 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i 190 (317)
.....+..+ | ....++.+...++.+++.++++.+.+|+++++||||.+| ++|+|+|||+++|+++++++.++
T Consensus 306 ~~~~~~~~~----g--~~~~~i~~~~~is~~~~~~~~~~~~sR~l~a~ardg~lP--~~~~~v~~~~~~P~~all~~~~i 377 (501)
T TIGR00911 306 AVDFGERLL----G--VMSWAMPALVGLSCFGSVNGSLFSSSRLFFVGGREGHLP--SLLSMIHVKRLTPLPSLLIVCTL 377 (501)
T ss_pred HHHHHHHHh----h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--HHHHHhcCCCCCCHHHHHHHHHH
Confidence 223333343 3 356677888889999999999999999999999999999 99999999999999999999888
Q ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcCCCcccCCchhHH
Q 021145 191 CIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK-FNAGPFYLGKASRPI 249 (317)
Q Consensus 191 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i 249 (317)
+.+... .+ .+..+.++.++...+.|.+..++.++.|||+ +.+||||.|...+.+
T Consensus 378 ~~l~~~--~~---~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~p~~~rp~r~p~~~~~l 432 (501)
T TIGR00911 378 TLLMLF--SG---DIYSLINLISFANWLFNALAVAGLLWLRYKRPEMNRPIKVPLFFPVF 432 (501)
T ss_pred HHHHHc--cC---CHHHHHHHHHHHHHHHHHHHHHHHHheeccCCCCCCCccCchHHHHH
Confidence 776543 22 3445667888888899999998888777664 458899998533333
No 30
>PRK11021 putative transporter; Provisional
Probab=99.97 E-value=1.4e-29 Score=238.12 Aligned_cols=204 Identities=19% Similarity=0.233 Sum_probs=165.6
Q ss_pred HHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHH
Q 021145 33 YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPA 112 (317)
Q Consensus 33 ~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 112 (317)
.++..++...+|+|.|+|.+++++||+|||+||+|||+..+..++.++|++.+.+..... ++++..+.+ .| ..
T Consensus 177 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~~~~~~-~~~~~~~~~-----~~-~~ 249 (410)
T PRK11021 177 SGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVVVLHFP-AYGDKQAAA-----AS-LP 249 (410)
T ss_pred HHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHhcC-CCcchhhcc-----cc-HH
Confidence 458899999999999999999999999999999999999999999999999988876655 444433222 25 66
Q ss_pred HHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHHH
Q 021145 113 QILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICI 192 (317)
Q Consensus 113 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~ 192 (317)
+.+++.+ | ++...++.+..+++.+++.++++.+.+|++++++|||.+| ++|+|+| |+|+|+++++++.+++.
T Consensus 250 ~~~~~~~----G-~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP--~~~~k~~-~~~tP~~ail~~~~i~~ 321 (410)
T PRK11021 250 GIFVQLF----G-GYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPP--SYLARLS-ARGVPVNALNAVLGCCA 321 (410)
T ss_pred HHHHHHh----C-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc--HHHHhhc-cCCCcHHHHHHHHHHHH
Confidence 6676665 3 3355677888899999999999999999999999999999 9999999 77999999999998887
Q ss_pred HHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCCCcccCCchhHHHHHHHHHHHHHHH
Q 021145 193 ILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCS 262 (317)
Q Consensus 193 ~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 262 (317)
+..++.......++.+.++++...++.|.+..++.++.+|++ .+.++.++.+.+++...
T Consensus 322 ~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~~l~~~~-----------~~~~~~~~~~~~~~~~~ 380 (410)
T PRK11021 322 VSILLIYALGLNLEALIAYANGIFVLIYLLCMLAACKLLKGR-----------YRPLAVLGCLLCLLLLV 380 (410)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------hHHHHHHHHHHHHHHHH
Confidence 766543333456788899999999999999999988777643 12456666666665544
No 31
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.97 E-value=7.3e-29 Score=236.96 Aligned_cols=217 Identities=18% Similarity=0.128 Sum_probs=178.8
Q ss_pred CCCchHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccC
Q 021145 28 ISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAG 107 (317)
Q Consensus 28 ~~~~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~ 107 (317)
|++...++..++...+|+|.|+|.++.++||+|| +||+||++..+...+.++|++.+.+....+ +.+++.+.++
T Consensus 190 ~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~-~k~ip~ai~~~~~~v~~lY~l~~~~~~g~~-~~~~l~~~~~---- 263 (468)
T TIGR03810 190 LGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK-RSDVGKATVIGLIGVLAIYVLVSVLSYGIM-TQAQLAGLKN---- 263 (468)
T ss_pred cccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC-cccchHHHHHHHHHHHHHHHHHHHHHHhCc-CHHHHhcCCC----
Confidence 4333345778899999999999999999999999 799999999999999999999999998888 7777765443
Q ss_pred CchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHH
Q 021145 108 AFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLC 187 (317)
Q Consensus 108 ~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~ 187 (317)
|...+.+++. ++++...++.++.+++.+++.++++.+.+|+++++||||.+| ++|+|+| |+|+|+++++++
T Consensus 264 -p~~~~~~~~~-----~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP--~~f~k~~-~~~tP~~al~~~ 334 (468)
T TIGR03810 264 -PSMAYVLEHM-----VGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMP--KYFGKEN-ANGAPTNALWLT 334 (468)
T ss_pred -chHHHHHHHH-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHhhC-CCCCCHHHHHHH
Confidence 3144455555 357788999999999999999999999999999999999999 9999999 789999999999
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc--CCCcccCCchhHHHHHHHHHHHHHHHHh
Q 021145 188 AAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFN--AGPFYLGKASRPICLIAFLWICYTCSVF 264 (317)
Q Consensus 188 ~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (317)
.+++.++.++...+.+.++.+.++++...++.|.+++++.++.|+|+++ .|++ ..+++.++.+.+++.....
T Consensus 335 ~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~ 408 (468)
T TIGR03810 335 NGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRGGQERGRRK-----QLLIGLVALLYAVWLIYAA 408 (468)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh-----hHHHHHHHHHHHHHHHHHh
Confidence 9988776655445678999999999999999999999998877765421 1222 3567777777777765543
No 32
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.96 E-value=7.8e-29 Score=236.73 Aligned_cols=252 Identities=17% Similarity=0.142 Sum_probs=195.9
Q ss_pred cccccCCccC--cccccceeeccCCCCCCCCc-hHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHH
Q 021145 2 LPLVALTTQS--ASYVFTHFEMSPEATGISSK-PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIIS 78 (317)
Q Consensus 2 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~ 78 (317)
++.++..+.+ +-..++.+ .++++|.+. ..++..+++.+.|+|.|+|..+..+||+|||+|++|+|+..+..++.
T Consensus 201 Vi~~G~~~~d~~~~ig~~y~---~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k~IP~ai~~s~~ri~ 277 (554)
T KOG1286|consen 201 VIIAGGGPADVKNWIGFRYW---HDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPRKAIPKAIKQSLLRIL 277 (554)
T ss_pred eeecCCCcCCcCCCcCcccc---CCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCcccccHHHHHHHHHHH
Confidence 4455555554 44466677 677788776 55899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCchh--hhcCCCcccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 021145 79 IFGWALILALCFSIQDFSY--LYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVY 156 (317)
Q Consensus 79 i~yil~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 156 (317)
++|++..+.+...+ |+++ +.+.. | ...-+.-..++. +-+....+++++.+++..+++|+.+++.+|.++
T Consensus 278 ~~Yi~~~~~l~l~v-py~~~~L~~~~------~-~~spF~iai~~~-~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~ 348 (554)
T KOG1286|consen 278 LFYILSSIVLGLLV-PYNDPRLDPGA------A-LASPFVIAIGNA-GAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLY 348 (554)
T ss_pred HHHHHHHHHheEEe-ccCccccCCCC------c-cccHHHHHHhcc-CccccchhhhHHHHHHHHHHHHHHhHHhHHHHH
Confidence 99999999999999 5655 53322 1 223333233322 344455699999999999999999999999999
Q ss_pred hhccCCCCCccccceeccCCCCChHHHHHHHHHHHHHHHhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-
Q 021145 157 ALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK- 234 (317)
Q Consensus 157 ~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~- 234 (317)
+||+||++| ++|+++|+| |+|+.++++..+++.+..+.. ....+.++++.++.+++.++.|..++++.+++|+..
T Consensus 349 amA~~G~~P--k~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~i~~~~i~~R~a~~ 425 (554)
T KOG1286|consen 349 ALAKDGLAP--KFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAWTLVALSHLRFRYAMK 425 (554)
T ss_pred HHHhcCCcc--hHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHHHHHHHHHeeeeeccc
Confidence 999999999 999999966 999999999999998877754 344678999999999999999999999999888653
Q ss_pred -----CcCCCcccCCchhHHHHHHHHHHHHHHHHhhCCCC
Q 021145 235 -----FNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTF 269 (317)
Q Consensus 235 -----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 269 (317)
.++.+|+.+ ..+.....+.+...+......+...
T Consensus 426 ~q~~~~~~~~~~s~-~~~~gs~~~~~~~~l~~~~~~~~~~ 464 (554)
T KOG1286|consen 426 VQGRSLDELPYKSP-TGPYGSYYGLLVNILILLAQFYVAF 464 (554)
T ss_pred ccCCCcccccccCC-CCCchhHHHHHHHHHHHHHHHhccc
Confidence 234466665 3344444444444444444444333
No 33
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.96 E-value=9e-30 Score=244.01 Aligned_cols=225 Identities=20% Similarity=0.191 Sum_probs=180.5
Q ss_pred hHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchH
Q 021145 32 PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVP 111 (317)
Q Consensus 32 ~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 111 (317)
..+++.++..++++|.|+|.++..+||+||||||+|||+..++++++++|++...+....+ ++++....+....+.| +
T Consensus 199 ~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~-~~~~~~~~~~~~~~sp-~ 276 (478)
T PF00324_consen 199 FSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATLLSVLRIGVFYVLTSYALTLAV-PYDNLGLTAASNSASP-F 276 (478)
T ss_pred hhHHHHhhhhhhcccccccccccccccCCCchhhhhhHhhhhhhhhhhhhhhhhhhccccc-Cccchhhccccccccc-h
Confidence 4569999999999999999999999999999999999999999999999999999999998 5665543332111225 5
Q ss_pred HHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHH
Q 021145 112 AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAIC 191 (317)
Q Consensus 112 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~ 191 (317)
.+..+.. +.++...++.++.+.+.+++.++.+++.+|++++|+|||.+| +++.++++|+|+|++|++++.+++
T Consensus 277 ~~~~~~~-----~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l~ama~dg~lP--~~~~~~~~k~~~P~~Ai~~~~~i~ 349 (478)
T PF00324_consen 277 VIAAQYS-----GGPWLAWIVNAGILISAFSSANASLYAASRLLYAMARDGLLP--KKFFARHPKNGVPYVAILVSSIIS 349 (478)
T ss_pred hhhhhhc-----ccccccceecccchhhhhhhhhhhhcccceeehhhhhhhhhh--hhhhhhhhcCCceEEEEeeehhch
Confidence 5555444 678889999999999999999999999999999999999999 999999999999999999999998
Q ss_pred HHHHhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-c-----CCCcccCCchhHHHHHHHHHHHHHHHHh
Q 021145 192 IILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKF-N-----AGPFYLGKASRPICLIAFLWICYTCSVF 264 (317)
Q Consensus 192 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (317)
.+..+.. ....+.++.+.+..++..++.|.+.+++.+++||+.+ . +.+++.+ ..+...+.+...+.......
T Consensus 350 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~i~~ 428 (478)
T PF00324_consen 350 LLVLLLGSFSPGIVFNWLLNISTISNLIVYILINISYIRFRKKFKYRGRSISELPFKSP-FGPMFAILGIAALIIILIFL 428 (478)
T ss_pred heeeeeccchhhHHHHHHhhhhhhhhhhHHHhhhhhhhhhhhhhccccccccccChhhh-hhHHhHHHHHHHHHHHhhhh
Confidence 8877643 2234678889999999999999999999997776521 1 2356655 45555555555554444444
Q ss_pred hC
Q 021145 265 LL 266 (317)
Q Consensus 265 ~~ 266 (317)
.+
T Consensus 429 ~~ 430 (478)
T PF00324_consen 429 GF 430 (478)
T ss_pred hh
Confidence 33
No 34
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.95 E-value=8.8e-27 Score=220.24 Aligned_cols=233 Identities=26% Similarity=0.355 Sum_probs=184.5
Q ss_pred CCCCCCCchHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCC
Q 021145 24 EATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSN 103 (317)
Q Consensus 24 ~~~~~~~~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~ 103 (317)
++++|+. ++.++..++|+|.|+|.+++++||.|| ||+||++..+.+++.++|++.+++..... |.++....+.
T Consensus 183 ~~~~~~~----~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai~~~~~~~~i~y~l~~~~~~~~~-~~~~~~~~~~ 255 (426)
T PF13520_consen 183 FPSGWPG----FLAGFSVAFFAFSGFEAIASLAEENKN--KTIPRAIIISIIIVAIIYILFSIALLGAL-PDDELANSSN 255 (426)
T ss_dssp SCSSSSH----HHHHHHHHGGGGTTTTHHHHGGGGSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHTTS-THCHHHTTTC
T ss_pred CCccccc----hhhHHHHHHhhcccccccccccccccc--hhheeecccchhHHHHHHhhhhheeeecc-cchhhhcccc
Confidence 3445542 789999999999999999999999777 89999999999999999999999999999 6666644322
Q ss_pred cccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHH
Q 021145 104 ETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNA 183 (317)
Q Consensus 104 ~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a 183 (317)
.+++ ....+++. ++++...++.+..+++.+++.++.+.+.+|++++++|||.+| ++|+|+| |+|+|+++
T Consensus 256 --~~~~-~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~-k~~~P~~a 324 (426)
T PF13520_consen 256 --SPSP-FAVLASAV-----GGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLP--KWFAKVN-KFGTPYNA 324 (426)
T ss_dssp --HHCH-HHHHHHHH-----HCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS--GGGGTTS-SSSSCHHH
T ss_pred --cccc-cchhhccc-----cccccccccccccccccccccchhhcchhhcccccccccchh--hhhhhcc-ccCCceee
Confidence 0113 33444443 456799999999999999999999999999999999999999 9999999 99999999
Q ss_pred HHHHHHHHHHHHhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCCCcccCCchhHHHHHHHHHHHHHHH
Q 021145 184 VWLCAAICIILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCS 262 (317)
Q Consensus 184 ~~~~~~i~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 262 (317)
++++.+++.++.+.. ..+.+.++.+.++.++...+.|.+...+.++.|+|+++.++ .+ ..+.+++++.+.+++...
T Consensus 325 ~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r--~~-~~~~~~i~~~~~~~~~~~ 401 (426)
T PF13520_consen 325 IILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVLFLRRKRPDLKR--IP-YRPPVGIIGIIIILFVII 401 (426)
T ss_dssp HHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHSCSSGH---H-HHHHHHHHHHHHHHHHHH
T ss_pred ehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCC--CC-cchHHHHHHHHHHHHHHH
Confidence 999999997765433 33356788999999999999999999998877776544321 11 235677778787777777
Q ss_pred HhhCCCCCCCCCCCc
Q 021145 263 VFLLPTFYPISWDTF 277 (317)
Q Consensus 263 ~~~~~~~~~~~~~~~ 277 (317)
..+.|...+...+.+
T Consensus 402 ~~~~~~~~~~~~~~~ 416 (426)
T PF13520_consen 402 ASFFPLINPATWASL 416 (426)
T ss_dssp HCCCHHSHCCCC-HC
T ss_pred HHHHhccccchhhhh
Confidence 777665444444433
No 35
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.95 E-value=3.1e-26 Score=231.96 Aligned_cols=220 Identities=18% Similarity=0.114 Sum_probs=168.5
Q ss_pred HHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCc----ccCC-
Q 021145 34 AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNE----TAGA- 108 (317)
Q Consensus 34 ~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~----~~~~- 108 (317)
+++..+...+++|.|+|..++++||+|||+|++|||++.++.+++++|++++++..... +.+...+.... ..+.
T Consensus 281 ~f~~~~ai~F~A~tGi~agan~sgElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~-~~d~~~~~~~~l~~~~~g~~ 359 (953)
T TIGR00930 281 GFFSLFGIFFPSVTGILAGANISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACV-VRDATGDKNDTLVTNCTSAA 359 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccc-cHhhhcccchhhhcccccch
Confidence 37777777888999999999999999999999999999999999999999998777776 43332211100 0000
Q ss_pred --------chHHHHHH---HHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCC
Q 021145 109 --------FVPAQILY---DAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKH 177 (317)
Q Consensus 109 --------p~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~ 177 (317)
| ....+. .... .......++.++++++.+++.++++++.+|+++++||||.+|+.++|+|+|+|+
T Consensus 360 ~f~~~~~~p-~~~gL~~~~~~~~---~~~~~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~ 435 (953)
T TIGR00930 360 CFSECAHNT-CSYGLMNNLQVMS---LVSPFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKN 435 (953)
T ss_pred hhhhhcccc-hhhhhcchHHHHh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCC
Confidence 0 000000 0110 112246789999999999999999999999999999999999778999999999
Q ss_pred CChHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcCCCcccCCchhHHHHHHHHH
Q 021145 178 KVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK-FNAGPFYLGKASRPICLIAFLW 256 (317)
Q Consensus 178 ~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~ 256 (317)
++|++|++++++++.+++++ ..++.+..+.+.++++.|++.+++.++.|..+ +..||.... ..+.+++++.+.
T Consensus 436 ~tP~~Alllt~iIa~l~ili-----~~l~~ia~lis~~fLl~Y~lvnla~~~l~~~~~p~~RP~fk~-~~~~~sllG~l~ 509 (953)
T TIGR00930 436 GEPLRAYLLTAFIAEGFILI-----AELNTIAPIISNFFLASYALINFSCFHASLLRSPGWRPRFKY-YHWWLSLLGASL 509 (953)
T ss_pred CCcHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccc-chHHHHHHHHHH
Confidence 99999999999999888772 35778888889999999999999988766433 334443222 467888888888
Q ss_pred HHHHHHHh
Q 021145 257 ICYTCSVF 264 (317)
Q Consensus 257 ~~~~~~~~ 264 (317)
|+++++..
T Consensus 510 c~~lmf~i 517 (953)
T TIGR00930 510 CCAIMFLI 517 (953)
T ss_pred HHHHHHHH
Confidence 88877665
No 36
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.95 E-value=1.8e-26 Score=220.24 Aligned_cols=217 Identities=26% Similarity=0.330 Sum_probs=178.4
Q ss_pred chHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCch
Q 021145 31 KPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFV 110 (317)
Q Consensus 31 ~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~ 110 (317)
...++..++...+|+|.|+|.+++++||+|||+|++||++..+.+.+.++|++.+.+..... +.+++... . . ..|
T Consensus 199 ~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~-~-~-~~p- 273 (466)
T COG0531 199 SFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVL-PAGDLAAS-A-P-SAP- 273 (466)
T ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhCc-cHHHHhcc-C-C-Ccc-
Confidence 34479999999999999999999999999999999999999999999999999999999998 66555443 2 1 146
Q ss_pred HHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHH
Q 021145 111 PAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAI 190 (317)
Q Consensus 111 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i 190 (317)
..+...... +.+...++.+..+++.+++.+++..+.+|.+++++|||.+| ++|+|+|+|+++|+++++++.++
T Consensus 274 ~~~~~~~~~-----g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP--~~~~~~~~~~~~P~~a~~~~~ii 346 (466)
T COG0531 274 LALAALFGG-----GNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLP--KFFAKVNPKGRTPVIALILTGII 346 (466)
T ss_pred HHHHHHHcC-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHHhCCCCCCCHHHHHHHHHH
Confidence 666666553 46789999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcCCCcccCCch--hHHHHHHHHHHHH
Q 021145 191 CIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK-FNAGPFYLGKAS--RPICLIAFLWICY 259 (317)
Q Consensus 191 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~i~~~~~~~~~~ 259 (317)
+..+.+........++.+.++++...++.|.+...+.+..||++ ++++++|.++.. ..++.+....+++
T Consensus 347 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (466)
T COG0531 347 SLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLKRPFRLPLAPLIPILGIVAVLLLLY 418 (466)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccchHHHHHHHHHHHHHH
Confidence 98333222111556889999999999999999999998777764 457888877433 3444444444444
No 37
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=99.69 E-value=3.2e-16 Score=148.72 Aligned_cols=212 Identities=18% Similarity=0.144 Sum_probs=157.3
Q ss_pred HHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHH
Q 021145 35 VILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQI 114 (317)
Q Consensus 35 ~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 114 (317)
+..-+..-+=+.+|+-+.++.+++.|||+|.||.+.+.+++....+|+..++.+...+ +...+-+.- |+. +-..
T Consensus 412 FtlLvgIfFPsVTGImaGSNrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i-~~~vLRDKf----G~s-v~g~ 485 (1075)
T KOG2082|consen 412 FTLLVGIFFPSVTGIMAGSNRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACI-EGVVLRDKF----GQS-VGGN 485 (1075)
T ss_pred HHHHHHhhccccceeeecCCCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhh-cchhhhhhh----hhh-ccCc
Confidence 4444444555889999999999999999999999999999999999999888888877 422222211 111 0000
Q ss_pred HHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHHHHH
Q 021145 115 LYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIIL 194 (317)
Q Consensus 115 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~~~ 194 (317)
. ..+.. .....+++.++.+++++|+...+..+++|+++++|||+.+|+-+.|+|.. ++|.|.+|++++++++...
T Consensus 486 l--Vva~l--aWPsPwVi~IGsFlST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~-~ngEPt~aLlLT~~Ice~g 560 (1075)
T KOG2082|consen 486 L--VVATL--AWPSPWVIVIGSFLSTCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGK-ANGEPTWALLLTAIICECG 560 (1075)
T ss_pred E--EEEEe--cCCCceeeehhHHHHHhHHHHhhhcCcHHHHHHHhhcCccchhhhhcccc-CCCCccHHHHHHHHHHHhh
Confidence 0 01111 11245578899999999999999999999999999999999999999988 8899999999999999998
Q ss_pred HhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhccCcCCCcccCCchhHHHHHHHHHHHHHHHHhh
Q 021145 195 GLPILKVNVVFTAITSICTIGWVGGYAVPIFARM---VMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFL 265 (317)
Q Consensus 195 ~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 265 (317)
++ .++.+.... ...++++++|.++.++.. ++|--.++|| ||. .++.++.++..+|++.++...
T Consensus 561 IL--igslD~iAp---ilsmFFLMCY~fVNLaCavqtLLrtPnWRPR-fky--yHW~LSflG~sLC~~iMF~~S 626 (1075)
T KOG2082|consen 561 IL--IGSLDLIAP---ILSMFFLMCYLFVNLACAVQTLLRTPNWRPR-FKY--YHWSLSFLGASLCLAIMFISS 626 (1075)
T ss_pred he--eechhHHHH---HHHHHHHHHHHHHhHHHHHHHHhcCCCCCcc-chh--hhhHHHHHHHHHHHHHHHHHH
Confidence 88 555555554 445566777777666544 3333333332 443 578899999999999988774
No 38
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.52 E-value=3.7e-13 Score=127.23 Aligned_cols=203 Identities=19% Similarity=0.165 Sum_probs=155.5
Q ss_pred HHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHH
Q 021145 34 AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQ 113 (317)
Q Consensus 34 ~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 113 (317)
.+...+...+-+-.|+-+.+++++|.|+|.|.|||+.+.++....+.|+++.+.+.--. +..-+.+ +. +
T Consensus 295 ~F~~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~-~r~~Lq~-dy---------~ 363 (945)
T KOG1288|consen 295 DFASTFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTV-PRTLLQN-DY---------D 363 (945)
T ss_pred ehhhhheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCc-chHHhhh-ch---------h
Confidence 46666777777889999999999999999999999999999999999999888877766 4333322 22 2
Q ss_pred HHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHHHH
Q 021145 114 ILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICII 193 (317)
Q Consensus 114 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~~ 193 (317)
+++++ .....++.++.+-..+.+..+.+.+++|++.++|||+.+|.-..|+|...+.+.|+.|+.+...+.-+
T Consensus 364 v~~~i-------sl~p~fi~iGi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvql 436 (945)
T KOG1288|consen 364 VMMHI-------SLHPPFILIGILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQL 436 (945)
T ss_pred heeec-------cccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHH
Confidence 33222 11345677788888888999999999999999999999998888899988999999999999999888
Q ss_pred HHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcCCC-cccCCchhHHHHHHHHHHHHHH
Q 021145 194 LGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK-FNAGP-FYLGKASRPICLIAFLWICYTC 261 (317)
Q Consensus 194 ~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~i~~~~~~~~~~~~ 261 (317)
..+ .+.++.+..+.++.+++.|....++.+.++... +.-|| ||.-.|+ -+.++.+.++.++
T Consensus 437 vll-----~g~~N~iA~~it~~FLlty~~vNLacl~LeissAPNFRPtFkyF~w~--TclvG~l~s~~mM 499 (945)
T KOG1288|consen 437 VLL-----WGDINKIASMITMTFLLTYGAVNLACLLLEISSAPNFRPTFKYFNWH--TCLVGVLLSLGMM 499 (945)
T ss_pred HHH-----HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhhHH--HHHHHHHHHHhhh
Confidence 776 446788888899999999999999888666553 22232 5543333 2334444444443
No 39
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.48 E-value=1.3e-12 Score=121.92 Aligned_cols=197 Identities=13% Similarity=0.022 Sum_probs=135.6
Q ss_pred HHHHHhHhhhhhhcccc-ccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcc-cCCchH
Q 021145 34 AVILSFLVSQYSLYGYD-SAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNET-AGAFVP 111 (317)
Q Consensus 34 ~~~~a~~~~~~af~G~e-~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~-~~~p~~ 111 (317)
++..++...+++| |+| ..+.+.+|.|+++|++||++..+..++.++|++.+.+..+.+ +.+++.+..... +..+ +
T Consensus 179 ~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~~-~~~~l~~~~~~~~~~~~-l 255 (381)
T TIGR00837 179 YILSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGNL-PRSEFLPIIAKGGNLDG-L 255 (381)
T ss_pred HHHHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHcCCChHH-H
Confidence 5778888888888 665 688899999877999999999999999999999999999999 777775322100 0113 4
Q ss_pred HHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHH
Q 021145 112 AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAIC 191 (317)
Q Consensus 112 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~ 191 (317)
.+.+.... |+++...++.++..++..++.+++..+..+.+ + +.+.+.++|++ |..+.++..+..
T Consensus 256 ~~~~~~~~----~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l---------~--~~~~~~~~~~~-~~~~~~~~~~~p 319 (381)
T TIGR00837 256 VNALQGVL----KSSAIELALELFSNFALASSFLGVTLGLFDYL---------A--DLFKFDDSKKG-RFKTGLLTFLPP 319 (381)
T ss_pred HHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------H--HHhCCCcccCC-CchhhhhhHHhH
Confidence 44555444 67778899999999999999999998888544 3 33444343434 566677777666
Q ss_pred HHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCCCcccCCchhHHHHHH
Q 021145 192 IILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIA 253 (317)
Q Consensus 192 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 253 (317)
.++.. ..+...+..+........++...++....+..||+++ +.+||.| .++....+.
T Consensus 320 l~~a~--~~p~~~~~~l~~~G~~~~~~~~~~p~l~~~~~r~~~~-~~~~~~~-~~~~~~~~~ 377 (381)
T TIGR00837 320 LVFAL--FYPEGFLYAIGYAGLAATIWAVIIPALLAWKARKKFP-NAGYRVW-GGNKLLLLV 377 (381)
T ss_pred HHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCcccc-CChHHHHHH
Confidence 66654 2223334556565655555666666665555455433 4589998 555554443
No 40
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.16 E-value=9.6e-10 Score=101.49 Aligned_cols=179 Identities=15% Similarity=0.120 Sum_probs=135.1
Q ss_pred HHHHHhHhhhhhhc-------cccccchhhh-hccCcccchhhHHHHHH-HHHHHHHHHHHHHHHhhccCchhhhcCCCc
Q 021145 34 AVILSFLVSQYSLY-------GYDSAAHLTE-ETKGADKTGPIAILSSI-GIISIFGWALILALCFSIQDFSYLYDKSNE 104 (317)
Q Consensus 34 ~~~~a~~~~~~af~-------G~e~~~~~~~-E~k~P~r~ip~ai~~~~-~~~~i~yil~~~~~~~~~~~~~~~~~~~~~ 104 (317)
.+..++.-..+.++ |+-.+..+.+ |.|||+|+.|+.+..++ ..+.+.|+....++.++. +.+++.+.++
T Consensus 175 ~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~~lGa~-~~~~~~~~~~- 252 (378)
T TIGR00796 175 AFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAGLIAAVLLAFIYLSLFYLGAT-SAAAAGDAVN- 252 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHhhhcccCC-
Confidence 47788888888898 9999999998 99999999999999999 778888888888888887 5554543211
Q ss_pred ccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHH
Q 021145 105 TAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAV 184 (317)
Q Consensus 105 ~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~ 184 (317)
.++. +.+..++.+ |+.+..++.+.+.++++++.++...+++ +.|+|.++| .|+.+.
T Consensus 253 -~~~~-l~~~a~~~~-----G~~G~~ll~i~v~lACLtT~iGli~~~a---------------~~f~~~~~k--~~y~~~ 308 (378)
T TIGR00796 253 -GAQI-LSAYSQHLF-----GSLGSFLLGLIITLACLTTAVGLTTACS---------------EYFHKLVPK--LSYKTW 308 (378)
T ss_pred -cHHH-HHHHHHHHc-----chhHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHhcCC--CCHHHH
Confidence 1234 666677776 3558999999999999999999999944 556666645 899998
Q ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhccC-cCCCcccC
Q 021145 185 WLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMV--MAEQKF-NAGPFYLG 243 (317)
Q Consensus 185 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~--~~~~~~-~~~~~~~~ 243 (317)
++...+....+. ...++.+++++.-...+.|=+.....+. .||+.+ ++|+||.+
T Consensus 309 v~~~~l~s~~ia-----~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~~~~~~y~~~ 365 (378)
T TIGR00796 309 VIVFTLFSFIVA-----NLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWDSKRAVYQIT 365 (378)
T ss_pred HHHHHHHHHHHH-----HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeehH
Confidence 888887776665 2347778887777777777666555554 555443 37888876
No 41
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=98.53 E-value=9.3e-08 Score=90.31 Aligned_cols=218 Identities=19% Similarity=0.152 Sum_probs=149.1
Q ss_pred hHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhc-----cCchhhhcCCCccc
Q 021145 32 PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSI-----QDFSYLYDKSNETA 106 (317)
Q Consensus 32 ~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~-----~~~~~~~~~~~~~~ 106 (317)
...++.-+...+=+.+|.-+..+++++.|+|++++|++...++.....+|+....-..... +...+..+.+. ..
T Consensus 222 ~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c-~~ 300 (643)
T KOG2083|consen 222 GYTFFSVFAVFFPAATGILAGANISGDLKDPQKAIPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSC-PI 300 (643)
T ss_pred CCceEeeeeeecchhhhhhccccccCCCCCchhhcccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCC-cc
Confidence 4467777788888999999999999999999999999999999999999977554444332 11112212111 11
Q ss_pred CCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHH
Q 021145 107 GAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWL 186 (317)
Q Consensus 107 ~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~ 186 (317)
+..+-.+..+.. .........+...+.+.+..+.+.+..++++.+.+|+..|-.-+++|-.+|++.|.++..+
T Consensus 301 gl~~~~qv~smv-------S~~~Pl~~AGi~~a~LSsalsslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l 373 (643)
T KOG2083|consen 301 GLTNYLQVMSMV-------STFGPLITAGILAAELSSALSSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLL 373 (643)
T ss_pred chHHHHHHHHhH-------hhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHH
Confidence 111122233322 1144466778888899999999999999999999999999667889999999999999999
Q ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-cCCC-cccCCchhHHHHHHHHHHHHHHHHh
Q 021145 187 CAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKF-NAGP-FYLGKASRPICLIAFLWICYTCSVF 264 (317)
Q Consensus 187 ~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (317)
+...+..++. .+. ++.+-...+......|.....+.+..+-... .+|| ++.. -.+++.++.+.++...+..
T Consensus 374 ~~~~av~fi~--ige---ln~iapiis~FfL~syAlinf~~f~aSl~~s~~wRp~f~~y--n~wVSllGalKOG~ImFli 446 (643)
T KOG2083|consen 374 TFLTAVSFIA--IGE---LNIIAPIISNFFLLSYALINFSCFHASLAISEGWRPSFKFY--NAWVSLLGALLCLAIMFLI 446 (643)
T ss_pred HHHhHheeEE--ecc---cceeccchhhhhhhhhhccchhhhhhhhccccccCchhhhH--HHHHHHHHHHHHHHHHHHH
Confidence 9999988776 333 3444445566777888888776663333222 2222 2322 2455555555555554443
No 42
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.49 E-value=2.3e-05 Score=73.39 Aligned_cols=192 Identities=14% Similarity=0.038 Sum_probs=121.0
Q ss_pred chHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCch
Q 021145 31 KPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFV 110 (317)
Q Consensus 31 ~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~ 110 (317)
+......++...+++|.-...++.+.+..++-+|+++|++..+..+..++|++...+..+.+ |.++..+....+ + +
T Consensus 182 ~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l-~~~~~~~~~~~~-~-~- 257 (394)
T PF03222_consen 182 DWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLLWVFSILGSL-PREQFAEAIAQG-G-N- 257 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHhcC-C-C-
Confidence 34458899999999999999999999999977888999999999999999999999988888 555543321100 0 1
Q ss_pred HHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHH
Q 021145 111 PAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAI 190 (317)
Q Consensus 111 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i 190 (317)
.. .....+++..++++...+..+..+++..++..+...+....+... + ++ +.+++++ .....+..+.
T Consensus 258 ~~-~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~-----~---k~--~~~~~~r--~~~~~ltf~p 324 (394)
T PF03222_consen 258 VS-ALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADL-----F---KL--KNNSSGR--LKTWLLTFLP 324 (394)
T ss_pred hH-HHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H---cC--Cccccch--HHHHHHHHHh
Confidence 21 222233333367888888888888888888888888877776432 1 11 1121222 2222333333
Q ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhccCcCCCcccC
Q 021145 191 CIILGLPILKVNVVFTAITSICTIGWVGGYA-VPIFARMVMAEQKFNAGPFYLG 243 (317)
Q Consensus 191 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~-~~~~~~~~~~~~~~~~~~~~~~ 243 (317)
..++.+ .. .+.|...++.+.....+.+. ++... .+..|+++++++|+.+
T Consensus 325 pl~~a~--~~-p~~F~~al~~aG~~~~il~~ilP~~m-~~~~r~~~~~~~~~~~ 374 (394)
T PF03222_consen 325 PLIFAL--LF-PNGFLIALGYAGIGIAILLGILPALM-VWKARKRKPKQPYRVP 374 (394)
T ss_pred HHHHHH--HC-cHHHHHHHHhhcHHHHHHHHHHHHHH-HHHHHcccCCCCeEEe
Confidence 333333 22 34566666666544443333 44443 3444555555668876
No 43
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=98.23 E-value=7.3e-05 Score=69.21 Aligned_cols=110 Identities=8% Similarity=-0.125 Sum_probs=81.9
Q ss_pred HHHHHhH-hhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHH
Q 021145 34 AVILSFL-VSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPA 112 (317)
Q Consensus 34 ~~~~a~~-~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 112 (317)
.+..+.. ...++|.|+|......+|+||| |+.||++..+..+++++|++...+..+.. ++++..+... | ..
T Consensus 179 ~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~-~~~~k~~~~~~~~~~~ly~~~~~~~i~~l-g~~~~~~~~~-----P-~~ 250 (359)
T TIGR00912 179 PILKGAYPVVTFAFGEIEIFFLLFPLLSKK-KKIKKSIIKAIIIGVLLYILTTFVSISVF-GGNVTKNLYW-----P-TL 250 (359)
T ss_pred HHHhhhhHHhhhhhHHHHHHHHHHHHhCCh-hhhHHHHHHHHHHHHHHHHHHHHHHHhee-cHHHhhhhcc-----c-HH
Confidence 4666665 8899999999999999999996 56999999999999999999999999999 7777766554 7 66
Q ss_pred HHHHHHhccccCChh---HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021145 113 QILYDAFHGRYHNST---GAIILLIVIWGSFFFGGLSVTTSAARVV 155 (317)
Q Consensus 113 ~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~sR~l 155 (317)
+..+..- .+.. .-.++...-+.+.+......++..++.+
T Consensus 251 ~~~~~i~----~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~ 292 (359)
T TIGR00912 251 ELIKLIN----IGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGL 292 (359)
T ss_pred HHHHHhh----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665542 1111 2233444445555666666777777775
No 44
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.15 E-value=0.00043 Score=64.86 Aligned_cols=192 Identities=13% Similarity=-0.029 Sum_probs=120.4
Q ss_pred HHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccC-CchHH
Q 021145 34 AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAG-AFVPA 112 (317)
Q Consensus 34 ~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~ 112 (317)
....++...+++|.=...++.+....++-+|+++|++..+..+..++|++-..+..... +.+++.+...++.. .+ ..
T Consensus 182 ~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l-~~~~~~~~~~~~~~~~~-~l 259 (403)
T PRK15132 182 LALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQLATLGSI-DSTTFMGLLANHAGLNG-LL 259 (403)
T ss_pred HHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHccCchHH-HH
Confidence 37888899999999999999999998887788999999999999999999999999999 55554322111000 01 22
Q ss_pred HHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHHH
Q 021145 113 QILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICI 192 (317)
Q Consensus 113 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~ 192 (317)
+...... ++++...+..+...++..++..+...+....+..+-+.+ .+++.+. ....+..+...
T Consensus 260 ~~l~~~~----~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~----------~~~~~r~--~~~~l~flppl 323 (403)
T PRK15132 260 QALREVV----ASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRR----------NTVGGRL--QTGLITFLPPL 323 (403)
T ss_pred HHHHHHc----cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----------ccccCCc--hhehhhHHHHH
Confidence 3333332 677788888888888888888888888777775542211 0111111 12333334444
Q ss_pred HHHhhhcccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhccCcCCCcccCCchhH
Q 021145 193 ILGLPILKVNVVFTAITSICTI-GWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRP 248 (317)
Q Consensus 193 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (317)
++.+.+ .+.|....+.+.. ...+.+.++.......|++ +++++||.| -++.
T Consensus 324 i~a~~~---P~~F~~al~~aG~~~ail~~ilP~~m~~~~r~~-~~~~~y~v~-gg~~ 375 (403)
T PRK15132 324 AFALFY---PRGFVMALGYAGVALAVLALLLPSLLVWQSRKQ-NPQAGYRVK-GGRP 375 (403)
T ss_pred HHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCccCC-CChH
Confidence 444322 4455555555443 3344455566555444433 324678887 3444
No 45
>PRK10483 tryptophan permease; Provisional
Probab=98.00 E-value=0.0008 Score=63.05 Aligned_cols=119 Identities=13% Similarity=0.006 Sum_probs=86.7
Q ss_pred HHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHH
Q 021145 34 AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQ 113 (317)
Q Consensus 34 ~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 113 (317)
..+.++...+++|.=...++.+.+..++=+|+++|++..+..+..++|++-..+..+.+ +.+++.+...+ +.. + +
T Consensus 193 ~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Iplv~yl~W~~~~lg~l-~~~~~~~~~~~--~~n-i-~ 267 (414)
T PRK10483 193 YLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALALYTIWLLATMGNI-PRPEFIGIAEK--GGN-I-D 267 (414)
T ss_pred HHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHc--CCC-h-H
Confidence 37788889999998889999999988765568999999999999999999999999999 55554332100 011 3 2
Q ss_pred HHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 021145 114 ILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYA 157 (317)
Q Consensus 114 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 157 (317)
...+.+++..++++...+..+...++..++..+...+....+..
T Consensus 268 ~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D 311 (414)
T PRK10483 268 VLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLAD 311 (414)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33233444336677777777777778777777777777666643
No 46
>PHA02764 hypothetical protein; Provisional
Probab=97.93 E-value=6.5e-05 Score=66.37 Aligned_cols=103 Identities=19% Similarity=0.229 Sum_probs=74.3
Q ss_pred HHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHH
Q 021145 35 VILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQI 114 (317)
Q Consensus 35 ~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 114 (317)
...++....-+|.=.|+..+.++|+||-+|....+-..+-..+.++-+.-. +.. .
T Consensus 183 ~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~~~~gyf~s~~~~~~~~ii~s---------y~n-------------~--- 237 (399)
T PHA02764 183 LLSALLFDLSAFIFINAISYIAGEIKNIKKSSMIGYFVSYGIVAILSIIDS---------YSN-------------L--- 237 (399)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHh---------hhh-------------H---
Confidence 677777777888889999999999999998887776666555544322211 100 0
Q ss_pred HHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChH
Q 021145 115 LYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPS 181 (317)
Q Consensus 115 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~ 181 (317)
. ++...+..+.++.+....--.||+.++|+.|+.+| ++|+|.| | ++|.
T Consensus 238 --------------~-il~~~~~~w~~~y~~~~~~~~srli~~~~fd~~lp--e~f~k~~-~-nv~~ 285 (399)
T PHA02764 238 --------------N-ILFALMPIWFFSYMPIANKIQSRLIQTMSFDKVLP--EKFSKIN-P-NVLL 285 (399)
T ss_pred --------------H-HHHHHHHHHHHhheeeecchHHHHHHHHHhhhhch--HHHhccC-C-Ccee
Confidence 0 11112555666777777778899999999999999 9999999 4 5787
No 47
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=97.91 E-value=0.00025 Score=66.42 Aligned_cols=119 Identities=8% Similarity=-0.032 Sum_probs=85.1
Q ss_pred HHHHHHhHhhhhhhccccccchhh----hhccCc---ccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcc
Q 021145 33 YAVILSFLVSQYSLYGYDSAAHLT----EETKGA---DKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNET 105 (317)
Q Consensus 33 ~~~~~a~~~~~~af~G~e~~~~~~----~E~k~P---~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~ 105 (317)
..+..++...+|+|.|+|..+.+. +|.+|| +|+..|++..+..+..++|++..++..... +.+++.+....+
T Consensus 186 ~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l-~~~~~~~a~~~n 264 (397)
T TIGR00814 186 KTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSL-SPAEAVAAKEQN 264 (397)
T ss_pred HHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHcC
Confidence 458999999999999999999998 777755 578899999999999999999999999999 666665433210
Q ss_pred cCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 021145 106 AGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALS 159 (317)
Q Consensus 106 ~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 159 (317)
.+ .. +.+.+..++++...+..+...++...+..+...+..-.+..+-
T Consensus 265 --is-~L----s~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~ 311 (397)
T TIGR00814 265 --IS-IL----SYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIV 311 (397)
T ss_pred --cH-HH----HHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 12 22 2222222566666666666666666666666666655555544
No 48
>PRK09664 tryptophan permease TnaB; Provisional
Probab=97.89 E-value=0.0019 Score=60.55 Aligned_cols=118 Identities=8% Similarity=-0.092 Sum_probs=83.9
Q ss_pred HHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHH
Q 021145 34 AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQ 113 (317)
Q Consensus 34 ~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 113 (317)
.+..++...+.+|.=...++.+..-.++=.|+++|+++.+..+..+.|++...+....+ |.+++.....+ +.. +.+
T Consensus 194 ~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpLviY~~W~~~ilG~l-p~~~~~~~~~~--g~n-v~~ 269 (415)
T PRK09664 194 YIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALVIYLFWLYCTMGNI-PRESFKAIISS--GGN-VDS 269 (415)
T ss_pred HHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHc--CCC-chH
Confidence 36678888888888888889998888766688999999999999999999999999988 55555322110 111 434
Q ss_pred HHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 021145 114 ILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVY 156 (317)
Q Consensus 114 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 156 (317)
......++. .+++...+..+...++..++..+...+....+.
T Consensus 270 l~~s~~~~~-~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~ 311 (415)
T PRK09664 270 LVKSFLGTK-QHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLA 311 (415)
T ss_pred HHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444442 566777777777777777777776666665553
No 49
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=97.61 E-value=0.0083 Score=56.70 Aligned_cols=63 Identities=14% Similarity=-0.059 Sum_probs=58.5
Q ss_pred chHHHHHHhHhhhhhhccccccchhhhhccCcccc-hhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021145 31 KPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKT-GPIAILSSIGIISIFGWALILALCFSIQ 93 (317)
Q Consensus 31 ~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~-ip~ai~~~~~~~~i~yil~~~~~~~~~~ 93 (317)
....+..++..++++|.+.-....+.+|.|+++|+ ++|++..+..+..++|+.........++
T Consensus 191 ~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~ 254 (415)
T COG0814 191 FWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFG 254 (415)
T ss_pred hHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34568999999999999999999999999988877 9999999999999999999999999985
No 50
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.96 E-value=0.053 Score=51.10 Aligned_cols=59 Identities=17% Similarity=0.168 Sum_probs=52.3
Q ss_pred HHHHHhHhhhhhhccccccchhhhhccCcccchh---hHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021145 34 AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGP---IAILSSIGIISIFGWALILALCFSIQ 93 (317)
Q Consensus 34 ~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip---~ai~~~~~~~~i~yil~~~~~~~~~~ 93 (317)
++...+..++|+|.|.-.+-.+=+|+|+|++ +| ..+-.++.++.++|+..-+.-....+
T Consensus 242 ~~~lf~GtaifafEGig~VLPlEn~Mk~P~~-F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG 303 (449)
T KOG1304|consen 242 GLPLFFGTAIFAFEGIGMVLPLENSMKKPQK-FPGPFGVLNLGMGIVTLLYIFLGFFGYLAFG 303 (449)
T ss_pred hhHHHHHHHHHHhccceEEEehhhcccChhh-cCCccchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4677788899999999999999999999954 88 99999999999999998888777773
No 51
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.77 E-value=0.028 Score=53.30 Aligned_cols=91 Identities=11% Similarity=0.041 Sum_probs=69.2
Q ss_pred HHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHHH
Q 021145 36 ILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQIL 115 (317)
Q Consensus 36 ~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 115 (317)
+.++....|+|.|.....++...+|+|+| ++|+...+..+++..|+.+++....+.+| ... +..
T Consensus 231 f~a~g~iaFaf~gH~v~peIq~tMk~p~~-f~~~~lis~~~~~~~y~~vai~GY~aFG~--~~~-------------~~i 294 (437)
T KOG1303|consen 231 FTALGIIAFAYGGHAVLPEIQHTMKSPPK-FKKALLISYIIVTFLYFPVAIIGYWAFGD--SVP-------------DNI 294 (437)
T ss_pred hhhhhheeeeecCCeeeeehHhhcCCchh-hhhHHHHHHHHHHHHHHHHHHhhhhhhcc--ccc-------------hhh
Confidence 78999999999999999999999999988 99999999999999999999998888742 111 111
Q ss_pred HHHhccccCChhHHHHHHHHHHHHHHHHHH
Q 021145 116 YDAFHGRYHNSTGAIILLIVIWGSFFFGGL 145 (317)
Q Consensus 116 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 145 (317)
...++ ++.|.....++.+.+-.+++..
T Consensus 295 l~s~~---~p~~~~~~ani~i~~h~i~s~~ 321 (437)
T KOG1303|consen 295 LLSLQ---PPTWLIALANILIVLHLIGSYQ 321 (437)
T ss_pred hhccc---CchhHHHHHHHHHHHHHhhhhh
Confidence 11121 2556666666666666665544
No 52
>PLN03074 auxin influx permease; Provisional
Probab=96.74 E-value=0.08 Score=50.96 Aligned_cols=60 Identities=7% Similarity=-0.030 Sum_probs=50.2
Q ss_pred hHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 021145 32 PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSI 92 (317)
Q Consensus 32 ~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~ 92 (317)
...++.++..++|+|.|.-....+-+|+|||+ ++++....+...+...|+..++......
T Consensus 232 ~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~-~F~~~~~l~~~~v~~~y~~~~~~gY~~f 291 (473)
T PLN03074 232 LVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KFKYIYLAATLYVLTLTLPSAAAVYWAF 291 (473)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHhccChh-cccchHHHHHHHHHHHHHHHHHeeeeee
Confidence 34577788889999999999999999999995 5999888888888888888766665555
No 53
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=96.64 E-value=0.14 Score=48.35 Aligned_cols=122 Identities=9% Similarity=-0.003 Sum_probs=80.6
Q ss_pred HHHHHhHhhhhhhccccccchhhhh----cc------CcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCC
Q 021145 34 AVILSFLVSQYSLYGYDSAAHLTEE----TK------GADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSN 103 (317)
Q Consensus 34 ~~~~a~~~~~~af~G~e~~~~~~~E----~k------~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~ 103 (317)
.+..++...+++|.=.-.++.+... .+ +.+|+..|++..+..+..+.|++..++..+.+ +.+++.+...
T Consensus 210 ~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsL-s~~~l~~a~~ 288 (443)
T PRK13629 210 TVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTL-SPQNMAEAKA 288 (443)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 4778888888888777777666655 42 23578999999999999999999999999999 6777654322
Q ss_pred cccCCchHHHHHHHHhccccCC-----hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 021145 104 ETAGAFVPAQILYDAFHGRYHN-----STGAIILLIVIWGSFFFGGLSVTTSAARVVYALS 159 (317)
Q Consensus 104 ~~~~~p~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 159 (317)
++ .+ ....+.+.+++..+. ++...+..+...++...+-.+...+.-=.+..+.
T Consensus 289 qn--~s-~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~ 346 (443)
T PRK13629 289 QN--IP-VLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLI 346 (443)
T ss_pred hC--Cc-HHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 12 344444444332223 5566666666666666666666666655555554
No 54
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=96.56 E-value=0.0017 Score=60.94 Aligned_cols=62 Identities=11% Similarity=0.003 Sum_probs=54.9
Q ss_pred chHHHHHHhHhhhhhhccccccchhhhhccCccc--chhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 021145 31 KPYAVILSFLVSQYSLYGYDSAAHLTEETKGADK--TGPIAILSSIGIISIFGWALILALCFSI 92 (317)
Q Consensus 31 ~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r--~ip~ai~~~~~~~~i~yil~~~~~~~~~ 92 (317)
+..++..++....++|.+......+.+|+|+|+| ++.|+...+..++.++|++.........
T Consensus 190 ~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~f 253 (409)
T PF01490_consen 190 SFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAF 253 (409)
T ss_pred hhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhccccee
Confidence 3457999999999999999999999999999875 4669999999999999999888877766
No 55
>PRK11375 allantoin permease; Provisional
Probab=96.28 E-value=0.39 Score=46.40 Aligned_cols=136 Identities=10% Similarity=0.014 Sum_probs=66.9
Q ss_pred hHHHHHHhHhhhhhhc-cccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCch
Q 021145 32 PYAVILSFLVSQYSLY-GYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFV 110 (317)
Q Consensus 32 ~~~~~~a~~~~~~af~-G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~ 110 (317)
.+.+..++...+-++. +.-..+.+++..|++ |+.-++..++..+...+..+..+...... ......... +
T Consensus 226 ~~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~-~~~~~~~~~g~~i~~~~~~~~g~~~~~~a--~~~~g~~~~----d-- 296 (484)
T PRK11375 226 GFLFLVVINAVVAVWAAPAVSASDFTQNAHSF-RAQALGQTLGLVVAYILFAVASVCIIAGA--SIHYGADTW----N-- 296 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHccccchhcccCCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCcC----C--
Confidence 4555555544444454 444677888888886 44556777666665554432222221111 001111111 1
Q ss_pred HHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHH-HHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHH
Q 021145 111 PAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGL-SVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAA 189 (317)
Q Consensus 111 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~ 189 (317)
..+.+.+. ++.....+..+..+++..++.. ...++.+--+ ...+| |+. |.| ++.++.++
T Consensus 297 p~~i~~~~-----~~~~~~~~a~l~~v~a~~~tN~~~N~ys~~~~l-----~~l~p--k~i---~~~-----~~~~i~~i 356 (484)
T PRK11375 297 VLDIVQRW-----DSLFASFFAVLVILMTTISTNATGNIIPAGYQI-----AALAP--TKL---TYK-----NGVLIASI 356 (484)
T ss_pred HHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHhhcccHHHHH-----HHhCc--Ccc---chh-----hHHHHHHH
Confidence 33444443 2233444555566666666654 4555554333 45677 543 312 35666666
Q ss_pred HHHHHHh
Q 021145 190 ICIILGL 196 (317)
Q Consensus 190 i~~~~~~ 196 (317)
++.++..
T Consensus 357 ig~~~~p 363 (484)
T PRK11375 357 ISLLICP 363 (484)
T ss_pred HHHHhcc
Confidence 6655543
No 56
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=96.19 E-value=0.12 Score=48.69 Aligned_cols=61 Identities=8% Similarity=-0.023 Sum_probs=54.6
Q ss_pred HHHHHHhHhhhhhhccccccchhhhhccCcc-cchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021145 33 YAVILSFLVSQYSLYGYDSAAHLTEETKGAD-KTGPIAILSSIGIISIFGWALILALCFSIQ 93 (317)
Q Consensus 33 ~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~-r~ip~ai~~~~~~~~i~yil~~~~~~~~~~ 93 (317)
.+++.++....++|...+..-..-+|.|||+ |++.+....+...+.++|......-....+
T Consensus 194 ~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg 255 (411)
T KOG1305|consen 194 SSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIILATLIYLLTGLFGYLTFG 255 (411)
T ss_pred hhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHHHHHHHHHHHHHhhhheec
Confidence 3599999999999999999999999999996 789999999999999999988877777663
No 57
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=96.19 E-value=0.47 Score=44.84 Aligned_cols=41 Identities=22% Similarity=0.338 Sum_probs=33.5
Q ss_pred HHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 021145 111 PAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVY 156 (317)
Q Consensus 111 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 156 (317)
+....++.+ |+.+..++.+.+.++|+.+..+...+++..+.
T Consensus 263 L~~i~~~~~-----G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~ 303 (427)
T PF05525_consen 263 LSQIANHLF-----GSAGQILLGIIVFLACLTTAIGLISACAEYFS 303 (427)
T ss_pred HHHHHHHHc-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666665 45588999999999999999999999998763
No 58
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=96.00 E-value=1.6 Score=42.14 Aligned_cols=84 Identities=12% Similarity=0.025 Sum_probs=49.7
Q ss_pred ccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHHHHHHhccccCChhHHHHHHHHHHH
Q 021145 59 TKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWG 138 (317)
Q Consensus 59 ~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 138 (317)
.||+ |+..|+..++......+++...........-..+..+.+. . +.....+. .+++...++..+++.
T Consensus 263 aks~-~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~~~~~~~-----~-~p~l~~~~-----lp~~l~gl~~a~~~a 330 (483)
T PRK09442 263 YKDS-KALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPDLTVPDK-----V-IPTLMLKV-----LPPFAAGIFLAAPMA 330 (483)
T ss_pred cCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccc-----h-HHHHHHHH-----cCHHHHHHHHHHHHH
Confidence 6675 6788888888776666665444332111100011112221 2 33455554 367888888888888
Q ss_pred HHHHHHHHHHHhhhhh
Q 021145 139 SFFFGGLSVTTSAARV 154 (317)
Q Consensus 139 ~~~~~~~~~~~~~sR~ 154 (317)
+.+++..+.+.+.+-.
T Consensus 331 A~mST~~s~l~~~ss~ 346 (483)
T PRK09442 331 AIMSTVDSQLLQSSST 346 (483)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9998888888766553
No 59
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=95.58 E-value=2.4 Score=40.83 Aligned_cols=96 Identities=14% Similarity=0.028 Sum_probs=56.2
Q ss_pred cccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHHHHHHhccccCChh
Q 021145 48 GYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNST 127 (317)
Q Consensus 48 G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~ 127 (317)
+.....+-.-..||+ |+..|+..++.+....++............-..++.+++. . +.....+.+ +++
T Consensus 251 ~~p~~~~R~~aak~~-~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d~-----~-~p~~~~~~l-----p~~ 318 (471)
T TIGR02119 251 GLPQTAVRCMSYKDS-KAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPDK-----V-IPLLAIKVL-----PPI 318 (471)
T ss_pred CchHHHHHHHhcCCH-HHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCccc-----h-HHHHHHHHc-----hHH
Confidence 333333344556774 7788999888776666655443332121100112222222 2 434554543 677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021145 128 GAIILLIVIWGSFFFGGLSVTTSAARVV 155 (317)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l 155 (317)
...++..+++.+.+++..+.+.+.+-.+
T Consensus 319 ~~gl~~a~llaA~mST~~s~l~~~ss~~ 346 (471)
T TIGR02119 319 LAGIFLAAPMAAIMSTVNSLLLQSSSTI 346 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888899999888888776553
No 60
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=95.51 E-value=1.5 Score=39.73 Aligned_cols=89 Identities=12% Similarity=0.100 Sum_probs=66.5
Q ss_pred ccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHHHHHHhccccCCh
Q 021145 47 YGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNS 126 (317)
Q Consensus 47 ~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~ 126 (317)
........+++|+|++ |+..++-..+-++.+++..+.+..+.... | ++.+.+- | ...++++. ++
T Consensus 193 ~~~avLv~lg~~~~~~-~~~~~g~l~gglIlgvl~~l~nlsLi~~~-~--~v~~~dI-----P-~l~i~~~~------~~ 256 (349)
T COG3949 193 VAVAVLVPLGGRMESR-KVSGIGGLIGGLILGVLLFLINLSLIALY-D--KVVNYDI-----P-LLTIAKNF------SP 256 (349)
T ss_pred hHhHhhhhhccccccc-chhhhhhhhhhHHHHHHHHHHHHHHHhhc-c--hhhccCC-----c-HHHHHHhc------cH
Confidence 4455567788999995 77888888888888888888888887776 3 4444443 7 77777765 46
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh
Q 021145 127 TGAIILLIVIWGSFFFGGLSVTTSA 151 (317)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (317)
....++.+.+.....++..+.+++.
T Consensus 257 ~i~lvm~vIi~~~IytT~vg~iy~l 281 (349)
T COG3949 257 LIGLVMSVIIWLEIYTTTVGLIYGL 281 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888888888773
No 61
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=95.31 E-value=0.32 Score=44.23 Aligned_cols=116 Identities=12% Similarity=-0.022 Sum_probs=83.1
Q ss_pred CchHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCc
Q 021145 30 SKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAF 109 (317)
Q Consensus 30 ~~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p 109 (317)
.+...++.+.....+.|.|+|....+...+|||+ +..|....+...+++.|.+..+...++. +++...+... |
T Consensus 172 ~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~-~~~k~~~~~~~~~~~~~~~~~~~~i~vf-G~~~~~~~~~-----P 244 (320)
T PF03845_consen 172 SGIKPILKGSLVISFPFGGIEILLFLFPFVKDKK-KLKKSLLIAILISGLFLLFIIFITIGVF-GPELAKKLTY-----P 244 (320)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHhceec-----H
Confidence 3444588889999999999999999999999975 4789999999999999999999999999 6766655443 6
Q ss_pred hHHHHHHHHh-ccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021145 110 VPAQILYDAF-HGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVV 155 (317)
Q Consensus 110 ~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 155 (317)
.....+..- +.. -+-.-.++...-..+.+......+++.++.+
T Consensus 245 -~~~~~~~i~i~~f--ieRld~~~i~~w~~~~~~~~~~~~~~~~~~~ 288 (320)
T PF03845_consen 245 -VLELARSIEIGDF--IERLDSIFILIWIIGIFIKISLYLYAASEGL 288 (320)
T ss_pred -HHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655555431 000 0113334444555555666667777777765
No 62
>PTZ00206 amino acid transporter; Provisional
Probab=94.81 E-value=2.3 Score=40.99 Aligned_cols=60 Identities=8% Similarity=-0.089 Sum_probs=53.2
Q ss_pred HHHHHhHhhhhhhccccccchhhhhccCcc-cchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021145 34 AVILSFLVSQYSLYGYDSAAHLTEETKGAD-KTGPIAILSSIGIISIFGWALILALCFSIQ 93 (317)
Q Consensus 34 ~~~~a~~~~~~af~G~e~~~~~~~E~k~P~-r~ip~ai~~~~~~~~i~yil~~~~~~~~~~ 93 (317)
..+.++....|+|.+.......-+|+|||. |+..+.+..+..++.++|.+..+......+
T Consensus 257 ~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG 317 (467)
T PTZ00206 257 RAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFG 317 (467)
T ss_pred HHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 478899999999999999999999999964 778899999999999999998888777773
No 63
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=94.50 E-value=1.5 Score=42.52 Aligned_cols=32 Identities=19% Similarity=0.010 Sum_probs=26.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021145 124 HNSTGAIILLIVIWGSFFFGGLSVTTSAARVV 155 (317)
Q Consensus 124 g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 155 (317)
.+++...++..+++.+..++..+.+.+.+-.+
T Consensus 315 ~p~~l~gl~~a~ilaA~mST~~s~l~s~ss~~ 346 (487)
T TIGR02121 315 FHPWIAGILLAAILAAIMSTISSQLLVSSSAL 346 (487)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888899999999999998887654
No 64
>PRK10484 putative transporter; Provisional
Probab=94.39 E-value=4.4 Score=39.57 Aligned_cols=83 Identities=14% Similarity=0.038 Sum_probs=47.9
Q ss_pred ccCcccchhhHHHHHHHHHHHHHHHHHH---HHHhhccCchhhhcCCCcccCCchHHHHHHHHhccccCChhHHHHHHHH
Q 021145 59 TKGADKTGPIAILSSIGIISIFGWALIL---ALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIV 135 (317)
Q Consensus 59 ~k~P~r~ip~ai~~~~~~~~i~yil~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~ 135 (317)
.|| +|+..|+..++.....+.++...+ ......|+ ++.+++. . +.....+.+ +++...++..+
T Consensus 270 ak~-~k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~--~~~~~d~-----~-~p~~~~~~l-----p~~l~Gl~~a~ 335 (523)
T PRK10484 270 AKN-LAEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGD--GLPNADM-----A-YPTLVNDVL-----PVPLVGFFAAV 335 (523)
T ss_pred CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCChhh-----H-HHHHHHHHc-----chhHHHHHHHH
Confidence 355 366778887776555444433221 11222211 1222222 2 334455543 66678888888
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 021145 136 IWGSFFFGGLSVTTSAARVV 155 (317)
Q Consensus 136 ~~~~~~~~~~~~~~~~sR~l 155 (317)
++.+..++..+.+.+.+-.+
T Consensus 336 ilAA~mST~~s~l~s~st~~ 355 (523)
T PRK10484 336 LFGAILSTFNGFLNSASTLF 355 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888989888888887654
No 65
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=94.28 E-value=0.13 Score=33.16 Aligned_cols=50 Identities=10% Similarity=0.102 Sum_probs=39.7
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCccchHHHHHHHHHHHhhheeeeccce
Q 021145 240 FYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKW 302 (317)
Q Consensus 240 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 302 (317)
||.| .-|.++.++....++++.-.- ..+++..+++.++|.+.|+.|.+|+
T Consensus 1 F~vP-~vP~~P~~si~~ni~Lm~~L~------------~~twirf~iWl~iGl~iYf~YG~~h 50 (51)
T PF13906_consen 1 FKVP-LVPFLPALSILINIYLMAQLS------------ALTWIRFGIWLAIGLVIYFGYGIRH 50 (51)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHhh------------HhHHHHHHHHHHHHHHHHHheeeec
Confidence 5677 778889999998888865441 1356899999999999999888775
No 66
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=93.99 E-value=1 Score=41.64 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=30.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 021145 124 HNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYAL 158 (317)
Q Consensus 124 g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ 158 (317)
|+++...++.++.+.+.+++......+.+|.+.+.
T Consensus 250 G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~ 284 (358)
T PF01566_consen 250 GSPWARYLFAIGLFAAGFSSSITATLAGAYVLADF 284 (358)
T ss_pred CchHHHHhHHHHHHHHHHhhHHHhccccceehHhh
Confidence 55789999999999999999999988888887544
No 67
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=93.54 E-value=4.3 Score=39.46 Aligned_cols=159 Identities=11% Similarity=-0.064 Sum_probs=74.2
Q ss_pred HHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHHH
Q 021145 36 ILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQIL 115 (317)
Q Consensus 36 ~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 115 (317)
+..+...+.+.+|-|+.-.-.+-. .||++.++-..-+.-+.++.-+..-+.... ++++.. +| +....
T Consensus 204 ~~~LG~V~L~~TGaEALyADmGHf--g~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~--~p~~~~--------np-Ff~~~ 270 (534)
T PF02705_consen 204 FFVLGAVFLCVTGAEALYADMGHF--GRKPIRIAWFFLVFPALLLNYFGQGALLLS--HPEAVS--------NP-FFLLI 270 (534)
T ss_pred hhhcchHHHHHhhHHHHHhhhccc--cchhhhhhHHHHHHHHHHHHHccHHHHHHc--Ccchhh--------hH-HHHHh
Confidence 445667788899999876543332 346666665553333322222222222222 122221 13 33222
Q ss_pred HHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCC--ChHHHHHHHHHHHHH
Q 021145 116 YDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHK--VPSNAVWLCAAICII 193 (317)
Q Consensus 116 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~--~P~~a~~~~~~i~~~ 193 (317)
++|+.+-+.+...++..-+-.+.+.++--+..+.-+-|.+|+- +..+.+++.. ...-.+-....++++
T Consensus 271 ---------P~~~~~p~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~-~I~hTS~~~~GQIYIP~vNw~L~i~~i 340 (534)
T PF02705_consen 271 ---------PEWLLWPMVILATLATIIASQAVISGAFSLTRQAIQLGYFPRL-KIVHTSEKEEGQIYIPEVNWLLMIGVI 340 (534)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCce-EEEECCcccCCcEechHHHHHHHHHHH
Confidence 3344444444444444444444455555666677788999932 2344454432 222222222233333
Q ss_pred HHhhhcccHHHHHHHHHHHHHHHH
Q 021145 194 LGLPILKVNVVFTAITSICTIGWV 217 (317)
Q Consensus 194 ~~~~~~~~~~~~~~l~~~~~~~~~ 217 (317)
.+++.+.+.+....-..++..+.+
T Consensus 341 ~vvl~F~~S~~la~AYGiAVt~tM 364 (534)
T PF02705_consen 341 AVVLGFRSSSNLAAAYGIAVTGTM 364 (534)
T ss_pred hhheEECChHHHHHHHHHHHHHHH
Confidence 333345555555555554444333
No 68
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=93.43 E-value=7.3 Score=37.05 Aligned_cols=104 Identities=11% Similarity=0.029 Sum_probs=48.0
Q ss_pred hHHHHHHhHhhhhhhcccccc-chhhhhccCcc-cchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCc
Q 021145 32 PYAVILSFLVSQYSLYGYDSA-AHLTEETKGAD-KTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAF 109 (317)
Q Consensus 32 ~~~~~~a~~~~~~af~G~e~~-~~~~~E~k~P~-r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p 109 (317)
+..+..+++.++-.+..|-.. +..+.=.|+|+ ++.-.+...+......+-+..-.+...+.++++ +
T Consensus 192 ~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~------------~ 259 (442)
T COG1457 192 PLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNAD------------S 259 (442)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc------------h
Confidence 344777777776666666443 45555555554 122233333333332222222222222221221 1
Q ss_pred hHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021145 110 VPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVV 155 (317)
Q Consensus 110 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 155 (317)
..+... .+ |+ +.....+.+.++..++..-..++.+=-.
T Consensus 260 -~~~~~~-~~----G~--~g~~~~lil~l~~~ttN~~nlYsa~ls~ 297 (442)
T COG1457 260 -IADVML-GL----GG--FGLPAILILVLGTVTTNANNLYSAGLSF 297 (442)
T ss_pred -HHHHHH-hc----cc--HHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 223332 22 33 5556666677777777666666655443
No 69
>PRK00701 manganese transport protein MntH; Reviewed
Probab=92.89 E-value=3.4 Score=39.45 Aligned_cols=36 Identities=14% Similarity=0.067 Sum_probs=21.3
Q ss_pred HHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021145 111 PAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSA 151 (317)
Q Consensus 111 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (317)
..+..++.+ | ++...++.++.+.+.+.+......+.
T Consensus 296 ~a~~L~p~~----G-~~a~~lFaiGL~aag~sS~i~~~~a~ 331 (439)
T PRK00701 296 AYLLLSPLL----G-AAAATLFGIALLASGLSSTVVGTLAG 331 (439)
T ss_pred HHHHHHHHH----h-HHHHHHHHHHHHHhHhHHHhHHHHHH
Confidence 334455554 3 56778888887777666655544333
No 70
>PRK12488 acetate permease; Provisional
Probab=92.69 E-value=11 Score=37.11 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=20.8
Q ss_pred hhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHH
Q 021145 44 YSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGW 82 (317)
Q Consensus 44 ~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yi 82 (317)
+.+.|.....+=-=-.||+ |+..|+..++.....++|.
T Consensus 272 lg~~~~p~~~qR~~aaks~-k~ar~s~~~~~~~~~~~~~ 309 (549)
T PRK12488 272 FGTAGLPHILMRFFTVSDA-REARKSVLYATGFIGYFYL 309 (549)
T ss_pred HHhccCcHHHHHhhcCCCH-HHHHHHHHHHHHHHHHHHH
Confidence 3444543333222234664 7788888888655555444
No 71
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=92.50 E-value=9.4 Score=35.82 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=30.4
Q ss_pred HHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021145 111 PAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVV 155 (317)
Q Consensus 111 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 155 (317)
+.+..++.+ |+.+..++.+.+.++|+.+..+.+.+++-..
T Consensus 265 L~~~s~~~f-----G~~G~~lL~~iv~lACLTTaiGLi~a~aefF 304 (431)
T COG1114 265 LSAYSQHLF-----GSYGSILLGLIVFLACLTTAVGLIVACAEFF 304 (431)
T ss_pred HHHHHHHHh-----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555 3447889999999999999999999988553
No 72
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=91.97 E-value=2 Score=40.42 Aligned_cols=87 Identities=16% Similarity=0.035 Sum_probs=51.0
Q ss_pred ccCcccchhhHHHHHHHHHHHHHHHHHHHHHhh---ccC-chhhhc---CCCcccCCchHHHHHHHHhccccCChhHHHH
Q 021145 59 TKGADKTGPIAILSSIGIISIFGWALILALCFS---IQD-FSYLYD---KSNETAGAFVPAQILYDAFHGRYHNSTGAII 131 (317)
Q Consensus 59 ~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~---~~~-~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~ 131 (317)
.|| +|+.+|+...+.+...+.+++..+..... .++ ..+... .+. ... +.....+.+ +++...+
T Consensus 229 ~ks-~~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~---~~~-~p~~~~~~l-----p~~l~gl 298 (407)
T TIGR00813 229 AKS-AKHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNS---DQA-YPLLVQELM-----PPGLAGL 298 (407)
T ss_pred cCC-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCCh---hhH-HHHHHHHHc-----CcchHHH
Confidence 355 47788999888777666655443322222 211 011110 011 112 334454443 6778888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Q 021145 132 LLIVIWGSFFFGGLSVTTSAARVV 155 (317)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~sR~l 155 (317)
+..+++.+.+++..+...+.+-.+
T Consensus 299 ~~agilaA~mST~~s~l~a~ss~~ 322 (407)
T TIGR00813 299 FLAAILAAVMSTLSSQLNSASTVF 322 (407)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHH
Confidence 888899999999888888876664
No 73
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=91.68 E-value=1 Score=42.33 Aligned_cols=32 Identities=13% Similarity=0.009 Sum_probs=25.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021145 124 HNSTGAIILLIVIWGSFFFGGLSVTTSAARVV 155 (317)
Q Consensus 124 g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 155 (317)
.+++...++..+++.+..++..+.+.+.+-.+
T Consensus 289 ~p~~~~gl~~~~~~aA~~ST~~s~l~a~ss~~ 320 (406)
T PF00474_consen 289 LPPGLAGLFLAGILAAIMSTADSLLLAISSIF 320 (406)
T ss_dssp S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHhhhHHHHHHHhhhhhhh
Confidence 46778888888889999999999998887765
No 74
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=89.32 E-value=22 Score=34.50 Aligned_cols=42 Identities=17% Similarity=0.063 Sum_probs=30.8
Q ss_pred HHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 021145 111 PAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYA 157 (317)
Q Consensus 111 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 157 (317)
+.......+ ++|...++..+.+.+..++..+.....+-.+-+
T Consensus 314 ~~~l~~~~~-----p~~~~g~~~~ailaAvmSt~ss~ll~~ss~~t~ 355 (493)
T COG0591 314 FPYLILALF-----PPWIAGLLLAAILAAVMSTASSQLLVASSAITR 355 (493)
T ss_pred HHHHHHHHC-----hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 445555554 678888888888888888888888887766543
No 75
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=88.95 E-value=25 Score=34.63 Aligned_cols=90 Identities=12% Similarity=0.040 Sum_probs=42.6
Q ss_pred ccCcccchhhHHHHHHHHHHHHHHHHHHHHHh---hccCchhhhcCCCcccCCch-HHHHHHHHhccccCChhHHHHHHH
Q 021145 59 TKGADKTGPIAILSSIGIISIFGWALILALCF---SIQDFSYLYDKSNETAGAFV-PAQILYDAFHGRYHNSTGAIILLI 134 (317)
Q Consensus 59 ~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~---~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~g~~~~~~~~~~ 134 (317)
.|| +|+..|+..++......+|+...+.... ..++..+..+......+.++ ....+...+ ++.++..++..
T Consensus 287 aks-~k~ar~s~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~l~glv~A 361 (549)
T TIGR02711 287 VSD-AKEARKSVFYATGFMGYFYILTFIIGFGAILLVSANPEFKDATGALIGGNNMAAVHLANAV----GGNLFLGFISA 361 (549)
T ss_pred cCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccCCCcchHHHHHHHHH----ccHHHHHHHHH
Confidence 355 4778899988877777776554322211 22111011110000000010 111121222 45666666666
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 021145 135 VIWGSFFFGGLSVTTSAAR 153 (317)
Q Consensus 135 ~~~~~~~~~~~~~~~~~sR 153 (317)
+.+.+.+++..+.+.+.+-
T Consensus 362 ~~~AA~mST~~s~l~a~st 380 (549)
T TIGR02711 362 VAFATILAVVAGLTLAGAS 380 (549)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666677777666666653
No 76
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=87.57 E-value=10 Score=35.81 Aligned_cols=103 Identities=18% Similarity=0.102 Sum_probs=59.1
Q ss_pred ccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHHHHHHhccccCCh
Q 021145 47 YGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNS 126 (317)
Q Consensus 47 ~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~ 126 (317)
.|....++-+.|++||.|+=-.+++-..+=..+...+..++....- .++...+.+ + .......+.+.+| +
T Consensus 236 ~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG-~~~~~~~~~----g----~~l~~~Af~~~~g-~ 305 (416)
T PF01235_consen 236 LGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTG-VWSWGSGLE----G----AALTQAAFSTVLG-S 305 (416)
T ss_pred CChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccC-CCCCCCcch----H----HHHHHHHHHHhhh-h
Confidence 4666667777899999886655555444433333322222222211 121111111 1 1222333333223 6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 021145 127 TGAIILLIVIWGSFFFGGLSVTTSAARVVYALS 159 (317)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 159 (317)
+...++.+++++-.++++.++.+..-|-+..+-
T Consensus 306 ~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 306 WGPYFVAIALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 788999999999999999999999988775543
No 77
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=87.27 E-value=5.1 Score=33.95 Aligned_cols=12 Identities=8% Similarity=0.481 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 021145 184 VWLCAAICIILG 195 (317)
Q Consensus 184 ~~~~~~i~~~~~ 195 (317)
+.+.++.+.+..
T Consensus 87 L~~~~if~~~~g 98 (206)
T PF06570_consen 87 LLFFGIFSLLFG 98 (206)
T ss_pred HHHHHHHHHHHH
Confidence 333333343333
No 78
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=86.37 E-value=17 Score=33.66 Aligned_cols=97 Identities=14% Similarity=0.088 Sum_probs=61.4
Q ss_pred hhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHh---hccCchhhhcCCCcccCCchHHHHHHHHhc
Q 021145 44 YSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCF---SIQDFSYLYDKSNETAGAFVPAQILYDAFH 120 (317)
Q Consensus 44 ~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 120 (317)
+...|.-....-+-..|| +|.+.++|.++..+++++-+.+-.+-.. +.|+.++ .+. - +...+.+.+
T Consensus 246 ~gvlglP~t~vr~ia~kD-skaih~gmiigt~vi~il~~gmhl~G~~graViPdlt~---~D~-----V-ip~lalkvl- 314 (473)
T COG4145 246 FGVLGLPHTAVRCIAFKD-SKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLTV---VDL-----V-IPTLALKVL- 314 (473)
T ss_pred HHHhcCcHHHHHHHhccc-hhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCCc---cch-----h-HHHHHHHhc-
Confidence 344454444455555688 5889999999999998877665444332 2333222 222 1 445666665
Q ss_pred cccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021145 121 GRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVV 155 (317)
Q Consensus 121 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 155 (317)
+|....++..+.+.+..++.++...-.|-.+
T Consensus 315 ----pp~~agifl~apmaAiMSTIds~L~~~sstl 345 (473)
T COG4145 315 ----PPFAAGIFLAAPMAAIMSTINSQLLQSSSTL 345 (473)
T ss_pred ----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777888888888877666544
No 79
>PRK09395 actP acetate permease; Provisional
Probab=85.54 E-value=39 Score=33.27 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=14.3
Q ss_pred ccCcccchhhHHHHHHHHHHHHHH
Q 021145 59 TKGADKTGPIAILSSIGIISIFGW 82 (317)
Q Consensus 59 ~k~P~r~ip~ai~~~~~~~~i~yi 82 (317)
.|| +|+..|+..++......+++
T Consensus 289 aks-~k~ar~~~~~~~~~~~~~~~ 311 (551)
T PRK09395 289 VSD-AKEARKSVFYATGFIGYFYI 311 (551)
T ss_pred cCC-hHHHHHhHHHHHHHHHHHHH
Confidence 355 36788888877655544443
No 80
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=85.42 E-value=12 Score=37.58 Aligned_cols=155 Identities=10% Similarity=-0.101 Sum_probs=72.2
Q ss_pred HHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHHHH
Q 021145 37 LSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILY 116 (317)
Q Consensus 37 ~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 116 (317)
..+..++.+.+|-|+.-.-.+-. .+|+|.++-..-+.-+.++.-+..-++... ++++.. .| +....
T Consensus 242 ~~LG~V~L~iTGaEALyADmGHF--g~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~--~p~~~~--------Np-Ff~~~- 307 (688)
T TIGR00794 242 VSLGGVVLSITGVEAMFADLGHF--GKLPIQLAWFTFVYPSLILCYIGQAAYLSK--HPEAIK--------NP-FFLSI- 307 (688)
T ss_pred eeccchhheeccHhhhhcccCCC--CcccceeehHHHHHHHHHHHHcchHHHHhc--Ccchhc--------Cc-HHHhC-
Confidence 34556777888999875444443 356676665533333333222223332222 222221 24 33221
Q ss_pred HHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHH--HHHHHHHHHHHH
Q 021145 117 DAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSN--AVWLCAAICIIL 194 (317)
Q Consensus 117 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~--a~~~~~~i~~~~ 194 (317)
++|..+-+.+...++.+-+-.+.+.+.=.+..+.-+-|.+|.- +..+.+++.+-=++ .+-....++++.
T Consensus 308 --------P~~~~~p~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~-~I~hTS~~~~GQIYiP~vNw~Lmv~~i~ 378 (688)
T TIGR00794 308 --------PDWALWPLFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRV-KIIHTSEKYHGQIYIPFVNWLLMLGVIA 378 (688)
T ss_pred --------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-eEEecCCccCCceeeHHHHHHHHHHHHh
Confidence 3444444444444444444444455555566667788999932 23445544332222 222222223333
Q ss_pred HhhhcccHHHHHHHHHHHHH
Q 021145 195 GLPILKVNVVFTAITSICTI 214 (317)
Q Consensus 195 ~~~~~~~~~~~~~l~~~~~~ 214 (317)
+++.+.+.+.+..-..++..
T Consensus 379 vvl~F~~S~~la~AYGiaVt 398 (688)
T TIGR00794 379 VTAGFRDTNNLGAAYGIAVT 398 (688)
T ss_pred eeEEecChHHHHHHhhhhhh
Confidence 33335555555544444433
No 81
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=85.09 E-value=8.6 Score=31.76 Aligned_cols=21 Identities=19% Similarity=0.388 Sum_probs=12.4
Q ss_pred CCCChHH-----HHHHHHHHHHHHHh
Q 021145 176 KHKVPSN-----AVWLCAAICIILGL 196 (317)
Q Consensus 176 r~~~P~~-----a~~~~~~i~~~~~~ 196 (317)
|+.-|+. ++++.++++++-.+
T Consensus 89 kNtdp~lm~lDssLl~lg~~aLlsgi 114 (226)
T COG4858 89 KNTDPWLMWLDSSLLFLGAMALLSGI 114 (226)
T ss_pred cCCCceEEEecccHHHHHHHHHHHHH
Confidence 4445553 66777766665554
No 82
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=81.85 E-value=48 Score=31.44 Aligned_cols=29 Identities=10% Similarity=0.101 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021145 126 STGAIILLIVIWGSFFFGGLSVTTSAARV 154 (317)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 154 (317)
+....++.++.+.+..++.....++....
T Consensus 284 ~~~~~lF~v~llasg~~s~~~~~~a~~~~ 312 (416)
T COG1914 284 SAAFVLFGVALLAAGLSSTVVATYAGQIV 312 (416)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHhhhhHHH
Confidence 55666666666666666665555555443
No 83
>PLN00149 potassium transporter; Provisional
Probab=80.80 E-value=32 Score=35.13 Aligned_cols=155 Identities=9% Similarity=-0.103 Sum_probs=68.6
Q ss_pred HhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHHHHH
Q 021145 38 SFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYD 117 (317)
Q Consensus 38 a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 117 (317)
.+..++.+.+|-|+.-.-.+- -.+|.|.+|-...+.=+.++.-+...++...- ++...+. ..| + +..
T Consensus 273 ~LGgV~L~iTG~EALyADlGH--F~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~--p~~~~~~-----~~p-F---y~~ 339 (779)
T PLN00149 273 SLGGILLCITGSEAMFADLGH--FSQLSIKIAFTSLVYPSLILAYMGQAAYLSKH--HVIESDY-----RIG-F---YVS 339 (779)
T ss_pred eecchhhcccchhhhhhcccC--CCccceeeeehhhHHHHHHHHhhhHHHHHhcC--cchhccc-----cCc-H---HHh
Confidence 455667788899987444443 34566766655433333332222233333222 2222121 124 3 222
Q ss_pred HhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHHHH--HH
Q 021145 118 AFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICII--LG 195 (317)
Q Consensus 118 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~~--~~ 195 (317)
. +++..+-+.+...++.+-+-.+.+.+.-.+..+.-+-|.+|.- +.-|++++..-=++.=.+..++.+. .+
T Consensus 340 i------P~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrv-kIvhTS~~~~GQIYIP~vNw~Lmv~~i~v 412 (779)
T PLN00149 340 V------PEKLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKV-KIVHTSSKIHGQIYIPEINWTLMLLCLAV 412 (779)
T ss_pred C------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-eEEecCcccCCceeeHHHHHHHHHHHHhh
Confidence 2 3334443333333333333344444444555666677999932 2345554444333333333333222 22
Q ss_pred hhhcccHHHHHHHHHHH
Q 021145 196 LPILKVNVVFTAITSIC 212 (317)
Q Consensus 196 ~~~~~~~~~~~~l~~~~ 212 (317)
.+.+.+......-..++
T Consensus 413 v~~F~~s~~l~~AYGiA 429 (779)
T PLN00149 413 TVGFRDTKRLGNASGLA 429 (779)
T ss_pred eeEecChHHHHHHhhhh
Confidence 22344444444444433
No 84
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=80.51 E-value=59 Score=31.60 Aligned_cols=32 Identities=19% Similarity=0.004 Sum_probs=26.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021145 124 HNSTGAIILLIVIWGSFFFGGLSVTTSAARVV 155 (317)
Q Consensus 124 g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 155 (317)
.+++...++..+++.+.+++..+.+.+.+-.+
T Consensus 322 lp~~l~gl~~a~ilAA~mST~~s~l~a~ss~~ 353 (502)
T PRK15419 322 FNPWIAGILLSAILAAVMSTLSCQLLVCSSAI 353 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888999999999999999998887553
No 85
>PLN00150 potassium ion transporter family protein; Provisional
Probab=78.84 E-value=33 Score=35.05 Aligned_cols=152 Identities=8% Similarity=-0.109 Sum_probs=68.0
Q ss_pred HhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHHHHH
Q 021145 38 SFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYD 117 (317)
Q Consensus 38 a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 117 (317)
.+..++.+.+|-|+.-.-.+- -.+|.|.+|-...+.=+.++.-+...++... ++++.. .| +.. .
T Consensus 289 ~LG~V~L~iTGaEALyADlGH--Fg~~~Iriaw~~~V~P~LlL~Y~GQaA~ll~--~p~~~~--------np-Ff~---~ 352 (779)
T PLN00150 289 SLGGIVLCMTGTEAMFADLGH--FTVKSMQIAFTSLVYPCLLLTYLGQAAYLVK--HMEDVN--------DP-FYR---S 352 (779)
T ss_pred EecceeeeecchhhhhccccC--CCccceeeeehhhHHHHHHHHHcchHHHHhc--Cccccc--------Cc-HHH---h
Confidence 355567778888877443333 3346666665533333322222222222222 222221 24 322 2
Q ss_pred HhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHHH--HHH
Q 021145 118 AFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICI--ILG 195 (317)
Q Consensus 118 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~--~~~ 195 (317)
. +++..+-+.+...++.+-+-.+.+.+.-.+..+.-+-|.+|.- +..|.++|.+-=++.=.+..++.+ +.+
T Consensus 353 i------P~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrv-kI~hTS~~~~GQIYIP~vNw~Lmv~~i~v 425 (779)
T PLN00150 353 L------PKPIYWPIFVLATCSAMIASQAMISATFSIVKQAMALGCFPRV-KIVHTSNKVHGQVYIPEINWILMVLCLVI 425 (779)
T ss_pred C------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-eEEecCcccCCceeeHHHHHHHHHHHHhh
Confidence 2 3334443333333333333344444444555666678999932 334555545433443333333322 222
Q ss_pred hhhcccHHHHHHHHHHH
Q 021145 196 LPILKVNVVFTAITSIC 212 (317)
Q Consensus 196 ~~~~~~~~~~~~l~~~~ 212 (317)
.+.+.+......-..++
T Consensus 426 v~~F~~s~~l~~AYGiA 442 (779)
T PLN00150 426 TAGFRDTDEIGNAYGIA 442 (779)
T ss_pred eEEecChHHHHHHhhhh
Confidence 33355555555444444
No 86
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=78.81 E-value=62 Score=30.90 Aligned_cols=31 Identities=16% Similarity=0.329 Sum_probs=28.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021145 125 NSTGAIILLIVIWGSFFFGGLSVTTSAARVV 155 (317)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 155 (317)
++++..++.+.+.++++++..+...++++.+
T Consensus 276 G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f 306 (439)
T PRK15433 276 GGGGSFLLAALIFIACLVTAVGLTCACAEFF 306 (439)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999999999876
No 87
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=78.34 E-value=59 Score=30.94 Aligned_cols=102 Identities=16% Similarity=0.094 Sum_probs=55.7
Q ss_pred ccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHHHHHHhccccCCh
Q 021145 47 YGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNS 126 (317)
Q Consensus 47 ~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~ 126 (317)
.|....++-+.|++||.|+=-.++.-..+=..+...+..++... -+.+++- +..+ +. ......++... ++
T Consensus 263 ~Gsa~~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~-tg~~~~~-~~~~---g~----~lt~~af~~~~-g~ 332 (425)
T TIGR00835 263 MGSAPIAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILL-SGVWNNG-EGLS---GA----QLTQQALSYGL-GS 332 (425)
T ss_pred cCcHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCccCCC-CCCc---HH----HHHHHHHHHHh-hh
Confidence 45556667788889998865444444333222222222222111 1112210 0101 11 22223333332 35
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 021145 127 TGAIILLIVIWGSFFFGGLSVTTSAARVVYAL 158 (317)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ 158 (317)
++..++.+.+++-.++++.++.+..-+-+..+
T Consensus 333 ~g~~~v~i~~~lFaftTii~~~yyge~~~~yl 364 (425)
T TIGR00835 333 FGAVFVAVALFLFAFSTIIGWYYYGEKNAEFL 364 (425)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68899999999999999999999887776544
No 88
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=76.70 E-value=27 Score=34.70 Aligned_cols=152 Identities=9% Similarity=-0.066 Sum_probs=69.3
Q ss_pred HhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHHHHH
Q 021145 38 SFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYD 117 (317)
Q Consensus 38 a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 117 (317)
.+...+.+.+|-|+.-.-.+- -.||+|.++-...+.=+.++.-+..-++... ++++.. .| +....
T Consensus 217 ~LG~V~L~vTGaEALYADmGH--FG~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~--~p~~~~--------Np-Ff~~~-- 281 (622)
T PRK10745 217 ALGAVVLAITGVEALYADMGH--FGKFPIRLAWFTVVLPSLVLNYFGQGALLLK--NPEAIK--------NP-FFLLA-- 281 (622)
T ss_pred EecceeeeccchHHHhhccCC--CCccceeeeehhhHHHHHHHHhcchHHHHhc--Cchhhc--------Cc-HHHhC--
Confidence 455567788888877544443 3457776666544432323222222222222 222221 24 32221
Q ss_pred HhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHH--HHHHHHHHHHHHH
Q 021145 118 AFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSN--AVWLCAAICIILG 195 (317)
Q Consensus 118 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~--a~~~~~~i~~~~~ 195 (317)
++|+.+-+.+...++..-+-.+.+.++=.+..+.-+-|.+|+- +..+.+++..-=++ .+-....++++..
T Consensus 282 -------P~~~~~p~viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl-~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~ 353 (622)
T PRK10745 282 -------PDWALIPLLILATLATVIASQAVISGVFSLTRQAVRLGYLPPM-RIIHTSEMESGQIYIPFVNWLLYVAVVIV 353 (622)
T ss_pred -------ChhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCc-eEEeCCCccCCceeeHHHHHHHHHHHHee
Confidence 3344444443333333333344444555566666778999932 23444444332222 2222223333333
Q ss_pred hhhcccHHHHHHHHHHH
Q 021145 196 LPILKVNVVFTAITSIC 212 (317)
Q Consensus 196 ~~~~~~~~~~~~l~~~~ 212 (317)
++.+.+.+....-..++
T Consensus 354 vl~F~sS~~La~AYGiA 370 (622)
T PRK10745 354 IVSFEHSSNLAAAYGIA 370 (622)
T ss_pred EEEecCchHHHHHhhhh
Confidence 33455545555444444
No 89
>PLN00151 potassium transporter; Provisional
Probab=74.82 E-value=95 Score=32.08 Aligned_cols=152 Identities=6% Similarity=-0.131 Sum_probs=65.6
Q ss_pred HhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHHHHH
Q 021145 38 SFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYD 117 (317)
Q Consensus 38 a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 117 (317)
.+..++.+.+|-|+.-.-.+- -.+|.|.+|-...+.=+.++.-+...++...- +++. ..| + +..
T Consensus 349 ~LGgVvLciTGaEALfADLGH--Fg~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~--p~~~--------~np-F---y~s 412 (852)
T PLN00151 349 ALGGCVLCATGSEAMFADLGY--FSVRSIQLAFTCLVLPCLLLAYMGQAAYLMKN--PDSA--------EQI-F---FSS 412 (852)
T ss_pred EecceeeeeccchhhhcccCC--CCccceeeeehhhHHHHHHHHHcchHHHHhcC--cccc--------cCc-H---HHh
Confidence 355566778888877443333 33466666655433333232222223333221 2222 124 3 222
Q ss_pred HhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHHHH--HH
Q 021145 118 AFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICII--LG 195 (317)
Q Consensus 118 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~~--~~ 195 (317)
. +++..+-+.+...++.+-+-.+.+.+.-.+..+.-+-|.+|.- +.-|++++..-=++.=.+..++.+. .+
T Consensus 413 v------P~~~~wP~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRv-kIvHTS~~~~GQIYIP~vNw~Lmv~~i~v 485 (852)
T PLN00151 413 V------PSSLFWPVFLIANLAALIASRAMTTATFSCIKQSMALGCFPRL-KIIHTSRKFMGQIYIPVINWFLLVMCLVV 485 (852)
T ss_pred C------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-eEEeCCCccCCceeeHHHHHHHHHHHHhh
Confidence 2 2333333333333333333334444444555566677999932 3345554544333333333332222 22
Q ss_pred hhhcccHHHHHHHHHHH
Q 021145 196 LPILKVNVVFTAITSIC 212 (317)
Q Consensus 196 ~~~~~~~~~~~~l~~~~ 212 (317)
.+.+.+...+..-..++
T Consensus 486 ~l~F~~s~~l~~AYGiA 502 (852)
T PLN00151 486 VCSFRSITDIGNAYGIA 502 (852)
T ss_pred eeeecCHHHHHHHhhhh
Confidence 22344444444444443
No 90
>PLN00148 potassium transporter; Provisional
Probab=72.66 E-value=40 Score=34.52 Aligned_cols=118 Identities=9% Similarity=-0.091 Sum_probs=54.5
Q ss_pred HhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHHHHH
Q 021145 38 SFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYD 117 (317)
Q Consensus 38 a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 117 (317)
.+..++.+.+|-|+.-.-.+- -.+|.|.+|-...+.=+.++.-+...++... ++++.. .| +.. .
T Consensus 272 ~LGgV~L~iTGaEALyADlGH--Fg~~~Iriaw~~~V~P~L~L~Y~GQaA~ll~--~p~~~~--------np-Ff~---~ 335 (785)
T PLN00148 272 SLGGILLSITGTEAMFADLGH--FTAASIRLAFATVIYPCLVVQYMGQAAFLSK--NIPSIP--------NS-FYD---S 335 (785)
T ss_pred eecchheeccchhhhhhhccC--CCccceEEeeeehHHHHHHHHHcchHHHHhc--Cccccc--------Cc-HHH---h
Confidence 355567788898887444443 3446666665543333322222223333322 222221 24 322 2
Q ss_pred HhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCC
Q 021145 118 AFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHK 178 (317)
Q Consensus 118 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~ 178 (317)
. +++..+-+.+...++.+-+-.+.+.+.-.+..+.-+-|.+|.- +.-|++++..
T Consensus 336 i------P~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrv-kIvhTS~~~~ 389 (785)
T PLN00148 336 I------PDPVFWPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRV-KVVHTSKHIY 389 (785)
T ss_pred C------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-eEEecCCccC
Confidence 2 2333333333333333333334444444555566677999932 2345554543
No 91
>PRK11017 codB cytosine permease; Provisional
Probab=70.40 E-value=97 Score=29.16 Aligned_cols=33 Identities=12% Similarity=0.036 Sum_probs=20.9
Q ss_pred ccccccchhhhhccCcccchhhHHHHHHHHHHHH
Q 021145 47 YGYDSAAHLTEETKGADKTGPIAILSSIGIISIF 80 (317)
Q Consensus 47 ~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~ 80 (317)
.+.-..+.+++..|++|+.+ .+...+..+...+
T Consensus 198 ~~~~~~~DysRy~k~~~~~~-~~~~lg~~i~~~~ 230 (404)
T PRK11017 198 SGGTLTADFVRFGRSAKIAV-LATMVAFFLGNSL 230 (404)
T ss_pred HhHhcCCChHhhccCcccee-ehhHHHHHHHHHH
Confidence 44556778899988875433 6666665554443
No 92
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=68.11 E-value=1.2e+02 Score=29.41 Aligned_cols=106 Identities=13% Similarity=0.025 Sum_probs=57.0
Q ss_pred HHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHHH
Q 021145 113 QILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICI 192 (317)
Q Consensus 113 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~ 192 (317)
......+++.. +..++....++..+....+...+.+..+-.++.+| +.+|+ .+.+..+...+-.+
T Consensus 379 ~a~~~~l~~lP----~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~---------~~ep~--~~~ri~W~~~~~~~ 443 (485)
T PF02028_consen 379 AALFAFLEQLP----LSKILSILFLILIFIFFVTSADSATYVLAMLSSKG---------DEEPP--RWLRIFWGLIIGAL 443 (485)
T ss_dssp HHHHHHHHTST----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT---------TSSS---HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhh----HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCC---------CCCCc--hHHHHHHHHHHHHH
Confidence 34444454442 33445555555555555555666666665665554 11211 23333333333333
Q ss_pred HHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021145 193 ILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQ 233 (317)
Q Consensus 193 ~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~ 233 (317)
...++..+..+..+.+..+..+-......+.+.+.++..||
T Consensus 444 a~~ll~~ggl~~lq~~~ii~~lP~~~v~~~~~~~~~k~l~~ 484 (485)
T PF02028_consen 444 AIVLLLIGGLDALQSASIIGGLPFSFVMLLMCISFIKALKE 484 (485)
T ss_dssp HHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333355567778888888887777777777777765554
No 93
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=65.47 E-value=1.3e+02 Score=28.76 Aligned_cols=115 Identities=17% Similarity=0.069 Sum_probs=61.2
Q ss_pred HHHHHhHhhhhhh---ccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCch
Q 021145 34 AVILSFLVSQYSL---YGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFV 110 (317)
Q Consensus 34 ~~~~a~~~~~~af---~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~ 110 (317)
++..++.=.+|+= .|....++.+.+++||-|+=-..+....+=..+..-..++... .-+.++.-.. .+ |.
T Consensus 264 aI~~Gv~RGlfSNEAGmGsap~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL-~sg~~~~~~~-~~---G~-- 336 (452)
T COG1115 264 AIRNGVKRGLFSNEAGMGSAPIAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIIL-LSGAWNSGGG-LS---GA-- 336 (452)
T ss_pred HHHHHHHHHhhcccccCCcchhHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHH-HcCCcccCCC-Cc---hH--
Confidence 3445555555544 4555556677788999775544433333212222222222211 1112211110 11 11
Q ss_pred HHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 021145 111 PAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYAL 158 (317)
Q Consensus 111 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ 158 (317)
..-++.+.+. -++++..++.+.+++-.++++.++++..=|-+.-+
T Consensus 337 --~ltq~A~~~~-~g~~G~~fv~i~l~lFafTTIlg~yyyge~~~~fl 381 (452)
T COG1115 337 --ALTQAAFSSH-LGSWGSYFVAIALFLFAFTTILGWYYYGEKNIEFL 381 (452)
T ss_pred --HHHHHHHHHh-cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333333 24579999999999999999999999987776443
No 94
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=63.92 E-value=2.3 Score=37.47 Aligned_cols=26 Identities=12% Similarity=0.203 Sum_probs=0.0
Q ss_pred eccCCCCChHHHHHHHHHHHHHHHhh
Q 021145 172 QLHPKHKVPSNAVWLCAAICIILGLP 197 (317)
Q Consensus 172 ~~~~r~~~P~~a~~~~~~i~~~~~~~ 197 (317)
+.+||--.|..++.+..++-.+.+++
T Consensus 13 ~r~pr~p~~~a~l~~~~llll~ail~ 38 (381)
T PF05297_consen 13 RRPPRCPQPHASLLFGLLLLLVAILV 38 (381)
T ss_dssp --------------------------
T ss_pred CCCCCCCCcchhHHHHHHHHHHHHHH
Confidence 45667666777777666555544443
No 95
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=62.43 E-value=1.5e+02 Score=28.60 Aligned_cols=150 Identities=15% Similarity=0.073 Sum_probs=70.7
Q ss_pred HHHhHhhhhhhccccccchhhhhc-cCc-ccchhhHHHHHHHHHHHHHHHHHHHHHh----hccCch----------hhh
Q 021145 36 ILSFLVSQYSLYGYDSAAHLTEET-KGA-DKTGPIAILSSIGIISIFGWALILALCF----SIQDFS----------YLY 99 (317)
Q Consensus 36 ~~a~~~~~~af~G~e~~~~~~~E~-k~P-~r~ip~ai~~~~~~~~i~yil~~~~~~~----~~~~~~----------~~~ 99 (317)
...++.++--..|.-..+|.--.. --| -|+-.|+..++...++++|+..-+.... +.+++. +..
T Consensus 237 i~~isl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A~~~v~t~~~~~p~w~~~w~~~~ 316 (529)
T COG4147 237 IDFISLGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILTPIIGAGARLLVGTNPVGKPAWAAKWIKTG 316 (529)
T ss_pred HHHHHHHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcchhhcccccc
Confidence 334444444445666666543222 111 1445577788888888999764433222 221110 000
Q ss_pred cCCCccc-CC-chHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHHHHHHHHhh----hhhhhhhccCCCCCcccccee
Q 021145 100 DKSNETA-GA-FVPAQILYDAFHGRYH-NSTGAIILLIVIWGSFFFGGLSVTTSA----ARVVYALSRDKGIPFSSIWRQ 172 (317)
Q Consensus 100 ~~~~~~~-~~-p~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~----sR~l~~~a~d~~lP~~~~~~~ 172 (317)
|...+.. +. +.........+ + ++|...+++.+.+...+++.-+..... ++=+|.+--|+- .+|
T Consensus 317 D~~~~gi~~~~n~a~vlaa~~i----~~g~~v~g~vsAga~AtaLstaaGL~l~iasavsHDiY~~vik~~------ase 386 (529)
T COG4147 317 DANGDGIGGWTNMAAVLAAPAI----GGGPWVLGFVSAGAFATALSTAAGLLLVIASAVSHDLYAMVIKKG------ATE 386 (529)
T ss_pred cccccccccccchHHHhhhHHh----cCCceehhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhCCC------CCc
Confidence 1111000 00 10222333334 4 677777888777777777665555544 444444332222 223
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHh
Q 021145 173 LHPKHKVPSNAVWLCAAICIILGL 196 (317)
Q Consensus 173 ~~~r~~~P~~a~~~~~~i~~~~~~ 196 (317)
.. +-..-+.+..+..+++..+..
T Consensus 387 ~~-~v~vaRi~~v~~~vva~~lgi 409 (529)
T COG4147 387 KK-EVRVARIAVVILGVVAILLGI 409 (529)
T ss_pred cc-eehhHHHHHHHHHHHHHHhee
Confidence 22 334445555555566555554
No 96
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=62.41 E-value=31 Score=29.72 Aligned_cols=13 Identities=8% Similarity=0.105 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 021145 202 NVVFTAITSICTI 214 (317)
Q Consensus 202 ~~~~~~l~~~~~~ 214 (317)
.+.++.+......
T Consensus 57 ~~~~~~i~~yg~~ 69 (224)
T PF09930_consen 57 MEIYEFILRYGMV 69 (224)
T ss_pred HHHHHHHHHHhHH
Confidence 4445555444433
No 97
>PTZ00206 amino acid transporter; Provisional
Probab=61.13 E-value=1.6e+02 Score=28.33 Aligned_cols=50 Identities=10% Similarity=-0.003 Sum_probs=39.8
Q ss_pred HHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCC
Q 021145 111 PAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIP 165 (317)
Q Consensus 111 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP 165 (317)
..+..++.+ ++++..++.+..++..++...+++...+..+...-++...|
T Consensus 123 Y~~la~~~~-----G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~ 172 (467)
T PTZ00206 123 YEGVARVLL-----GPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAP 172 (467)
T ss_pred HHHHHHHHh-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 678888876 46689999999999999999999999988876654443344
No 98
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=60.93 E-value=65 Score=28.88 Aligned_cols=36 Identities=14% Similarity=0.025 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhhhccCcCCCcccCCchhHHHHHHH
Q 021145 219 GYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAF 254 (317)
Q Consensus 219 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 254 (317)
...+..++.-+-+|.++++.||-..+..++.+.+..
T Consensus 52 ~~~l~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~ 87 (299)
T PRK09509 52 ASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQS 87 (299)
T ss_pred HHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHHH
Confidence 333444443344444555666655544444444333
No 99
>PRK09950 putative transporter; Provisional
Probab=60.55 E-value=1.7e+02 Score=28.55 Aligned_cols=97 Identities=9% Similarity=-0.012 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccC-CCCChHHHHHHHHHHHHHHHhhhccc-HHHH
Q 021145 128 GAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHP-KHKVPSNAVWLCAAICIILGLPILKV-NVVF 205 (317)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~-r~~~P~~a~~~~~~i~~~~~~~~~~~-~~~~ 205 (317)
+..++....++..+....++..+.+-.+-.++.+|.-+ + .|| |...=.|++.+..+-. .++..+. .+..
T Consensus 400 ~~~i~~~l~~vl~~if~vTs~DS~s~vla~~ts~g~~~--~----~~P~~~~ri~W~i~~g~ia~---~Ll~~gG~l~~l 470 (506)
T PRK09950 400 AGKLFLAAYLGIMIIFLASHMDAVAYTMAATSTRNLRE--G----DDPDRGLRLFWCVVITLIPL---SILFTGASLDTM 470 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCC--C----CCCCcchhHHHHHHHHHHHH---HHHHhCCcHHHH
Confidence 44455555555555566666666666665655554433 1 121 2222333433333222 2223443 6667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021145 206 TAITSICTIGWVGGYAVPIFARMVMAEQ 233 (317)
Q Consensus 206 ~~l~~~~~~~~~~~y~~~~~~~~~~~~~ 233 (317)
+....++.+-..+...+.+.+.++..|+
T Consensus 471 Q~~~ii~alP~~~i~~l~~~s~~k~l~~ 498 (506)
T PRK09950 471 KTTVVLTALPFLVILLIKVYGFIRWLKQ 498 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777767766666666666666544443
No 100
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=59.71 E-value=1.6e+02 Score=27.96 Aligned_cols=53 Identities=9% Similarity=-0.051 Sum_probs=29.3
Q ss_pred HHHHHHhHhhhhhh-ccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHH
Q 021145 33 YAVILSFLVSQYSL-YGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALIL 86 (317)
Q Consensus 33 ~~~~~a~~~~~~af-~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~ 86 (317)
..++.++...+-.+ .+....+.+++..|+++. -.++...+.....+...+..+
T Consensus 207 ~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~~-~~~~~~~~~~~~~~~~~~~g~ 260 (442)
T TIGR00800 207 WAFLYALSLVIGSFATWATNAPDFTRFGKSKKT-AIWGQFLALPGGFTLTCFFGI 260 (442)
T ss_pred HHHHHHHHHHHHHHHHHHcCchhhhhhcCCccc-hHHHHHHHHHHHHHHHHHHHH
Confidence 34555444433333 444567888888888644 445555555555554444333
No 101
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=58.77 E-value=1.9e+02 Score=28.54 Aligned_cols=63 Identities=11% Similarity=0.063 Sum_probs=32.2
Q ss_pred hhhhhhccCCCCCccccceeccCC-CC---ChHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Q 021145 153 RVVYALSRDKGIPFSSIWRQLHPK-HK---VPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVG 218 (317)
Q Consensus 153 R~l~~~a~d~~lP~~~~~~~~~~r-~~---~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 218 (317)
-+..+.-+-|.+|.-+ ..+.+++ .| .|..-.+ ..++..+.++.+.+.+.+..-..++..+.++
T Consensus 315 SLtrQAi~Lg~lPrm~-I~~TSe~~~GQIYiP~VN~~--L~~~V~~~vl~F~~S~~LAaAYGiAVTgtM~ 381 (627)
T COG3158 315 SLTRQAIRLGYLPRMR-IRHTSETESGQIYIPAVNWL--LLVAVVFVVLGFGSSSNLAAAYGIAVTGTMV 381 (627)
T ss_pred HHHHHHHHhCCCCceE-EEecCCcccceEEehHHHHH--HHHHHhheeeEecChHHHHHhhChheeehhH
Confidence 3444555779999322 2333433 22 3443333 3333344444567667777666666555443
No 102
>PRK09928 choline transport protein BetT; Provisional
Probab=58.48 E-value=2.1e+02 Score=28.99 Aligned_cols=95 Identities=8% Similarity=-0.184 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHHHHHHhhhcccHHHHHHH
Q 021145 129 AIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAI 208 (317)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l 208 (317)
..++....++..+....++..+.+-.+-.++..|.-| +. ..||...=.|++++..+-. . ++..+..+..+..
T Consensus 408 ~~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~--~~---~pp~~~RifW~v~ig~la~-~--LL~~GGL~aLQt~ 479 (679)
T PRK09928 408 FTFSASVATITGLLFYVTSADSGALVLGNFTSKLKDI--NS---DAPNWLRVFWSVAIGLLTL-G--MLMTNGISALQNT 479 (679)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCC--CC---CCCcceeeHHHHHHHHHHH-H--HHHhcCHHHHHHH
Confidence 3344444444444444555555555555555544322 11 0112222334443333222 2 2234556667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 021145 209 TSICTIGWVGGYAVPIFARMVMA 231 (317)
Q Consensus 209 ~~~~~~~~~~~y~~~~~~~~~~~ 231 (317)
..++.+-..+..++.+.+.++..
T Consensus 480 sii~alPf~~I~ll~~~sl~k~l 502 (679)
T PRK09928 480 TVIMGLPFSFVIFFVMAGLYKSL 502 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766666666666666433
No 103
>PRK03557 zinc transporter ZitB; Provisional
Probab=57.14 E-value=1.5e+02 Score=26.78 Aligned_cols=37 Identities=5% Similarity=-0.026 Sum_probs=17.1
Q ss_pred HHHHHHHHHhhhccCcCCCcccCCchhHHHHHHHHHH
Q 021145 221 AVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWI 257 (317)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 257 (317)
.+..++.-+-+|.++++.||=..+...+.+.+..+.+
T Consensus 62 ~~~l~a~~~s~kp~d~~hpyG~~r~E~l~al~~~~~l 98 (312)
T PRK03557 62 LFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIAL 98 (312)
T ss_pred HHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 3334443344444455566655554444444443333
No 104
>PLN02351 cytochromes b561 family protein
Probab=54.32 E-value=76 Score=27.61 Aligned_cols=26 Identities=12% Similarity=0.013 Sum_probs=12.9
Q ss_pred CCCccchHHHHHHHHHHHhhheeeec
Q 021145 274 WDTFNYAPVALGVGLGLIMLWWLLDA 299 (317)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~v~~~~~~ 299 (317)
++..-.....+.+++..+.+.|...+
T Consensus 196 ~Ea~lvN~~Glliv~fG~~Vv~~~~~ 221 (242)
T PLN02351 196 SESMVVNGLGLGLALLSGIVILAAVL 221 (242)
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhcC
Confidence 33333344455555555566665544
No 105
>PF14256 YwiC: YwiC-like protein
Probab=53.63 E-value=74 Score=24.74 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 021145 213 TIGWVGGYAVPIFARM 228 (317)
Q Consensus 213 ~~~~~~~y~~~~~~~~ 228 (317)
.++.+..|........
T Consensus 31 ~~aw~~~yl~~~p~~~ 46 (129)
T PF14256_consen 31 LLAWLFGYLAFYPFLL 46 (129)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555444333
No 106
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=53.23 E-value=2.2e+02 Score=27.61 Aligned_cols=59 Identities=8% Similarity=-0.108 Sum_probs=33.7
Q ss_pred hHHHHHHhHhhhhhh-ccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021145 32 PYAVILSFLVSQYSL-YGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFS 91 (317)
Q Consensus 32 ~~~~~~a~~~~~~af-~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~ 91 (317)
.+.++.++...+-.| +..-..+..+++.|+| |+.-++..+++.+...+.-+..+.....
T Consensus 239 ~w~~~~~~~~~v~~~Atl~lN~~DFsRfa~s~-~~~~~gq~~gLPv~~~l~~ligvv~tsa 298 (497)
T COG1953 239 SWAFLAGIAAWVGFWATLALNIPDFTRFAKSQ-KAQIWGQLVGLPVNFALFSLIGVVVTSA 298 (497)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhhcccCCh-hhhhhccchhhhHHHHHHHHHHhhHHHH
Confidence 344444443332222 4445567788888886 4455667777777766655555444443
No 107
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=52.31 E-value=2e+02 Score=26.82 Aligned_cols=40 Identities=18% Similarity=0.063 Sum_probs=25.6
Q ss_pred cchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 021145 52 AAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSI 92 (317)
Q Consensus 52 ~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~ 92 (317)
.+.+++..|+||| .-++..++..+...+..+.........
T Consensus 192 ~~DysRy~k~~~~-~~~~~~~G~~i~~~~~~~~G~~~~~a~ 231 (386)
T TIGR02358 192 IADYTRFARNPRH-VFLGTVLGYFIGSCWMYFLGLAVTLAT 231 (386)
T ss_pred ccchhhhcCCCcc-eehHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6788888888654 557777777666665555444444443
No 108
>COG4025 Predicted membrane protein [Function unknown]
Probab=52.26 E-value=1.1e+02 Score=26.56 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=13.8
Q ss_pred HhhhhhhhhhccCCCCCcc
Q 021145 149 TSAARVVYALSRDKGIPFS 167 (317)
Q Consensus 149 ~~~sR~l~~~a~d~~lP~~ 167 (317)
..--|-...+.||+.+|..
T Consensus 54 ~~~ve~v~e~~re~~i~~P 72 (284)
T COG4025 54 ASKVEKVMEKVREFQIPLP 72 (284)
T ss_pred HHHHHHHHHHHhcCCCcCC
Confidence 3456778888999888743
No 109
>COG1294 AppB Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
Probab=50.43 E-value=2.1e+02 Score=26.44 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=17.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 021145 245 ASRPICLIAFLWICYTCSVFLLPTFYPIS 273 (317)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 273 (317)
+.-+...+.............+|...|.+
T Consensus 266 ~af~~~~l~~~~~~~~~g~s~fP~v~p~~ 294 (346)
T COG1294 266 LAFVLTSLLFLLAILGLGISLFPYVLPSS 294 (346)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCcccCCc
Confidence 44455555566666666677777654443
No 110
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=49.41 E-value=33 Score=23.97 Aligned_cols=39 Identities=15% Similarity=0.113 Sum_probs=30.2
Q ss_pred chhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021145 53 AHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFS 91 (317)
Q Consensus 53 ~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~ 91 (317)
..+-.|++.|-|.+.+.++.+....+.+..+....-...
T Consensus 7 ~rLraE~~aPfR~lR~f~y~a~~aSa~iG~~i~~~rl~a 45 (75)
T PF11998_consen 7 ARLRAEAQAPFRGLRRFFYGAFGASAGIGLFIFLFRLIA 45 (75)
T ss_pred HHHHHHHHCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456789999999999999999988887766655544433
No 111
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=48.51 E-value=1.2e+02 Score=24.28 Aligned_cols=12 Identities=33% Similarity=0.601 Sum_probs=8.0
Q ss_pred eeccceecCCcc
Q 021145 297 LDARKWFTGPVR 308 (317)
Q Consensus 297 ~~~~~~~~~~~~ 308 (317)
.+.|+.++||-.
T Consensus 142 ~W~~~f~~GPlE 153 (163)
T PF04235_consen 142 LWLRRFRRGPLE 153 (163)
T ss_pred HHHHhcCcCcHH
Confidence 456777778744
No 112
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=47.46 E-value=13 Score=28.58 Aligned_cols=15 Identities=0% Similarity=0.118 Sum_probs=5.7
Q ss_pred HhhheeeeccceecC
Q 021145 291 IMLWWLLDARKWFTG 305 (317)
Q Consensus 291 ~~v~~~~~~~~~~~~ 305 (317)
.+++|+++|+|++..
T Consensus 82 lli~y~irR~~Kk~~ 96 (122)
T PF01102_consen 82 LLISYCIRRLRKKSS 96 (122)
T ss_dssp HHHHHHHHHHS----
T ss_pred HHHHHHHHHHhccCC
Confidence 345555555554443
No 113
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=47.31 E-value=2.9e+02 Score=27.19 Aligned_cols=31 Identities=0% Similarity=-0.235 Sum_probs=23.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021145 125 NSTGAIILLIVIWGSFFFGGLSVTTSAARVV 155 (317)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 155 (317)
+++...++..+.+.+.+++..+.+.+.+-.+
T Consensus 364 p~~l~gl~~ag~~aA~mSt~~s~l~a~st~~ 394 (552)
T TIGR03648 364 PYWVIGLVAAGGLAAALSTAAGLLLVISSAI 394 (552)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777788888888888888888776654
No 114
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=45.48 E-value=99 Score=26.42 Aligned_cols=27 Identities=4% Similarity=-0.080 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHhhheeeeccceecCC
Q 021145 280 APVALGVGLGLIMLWWLLDARKWFTGP 306 (317)
Q Consensus 280 ~~~~~~~~~~~~~v~~~~~~~~~~~~~ 306 (317)
....+.+++..+.+.|...+.+.|+.+
T Consensus 177 N~~gl~~~~fg~~V~~~~~~~~~kr~~ 203 (214)
T cd08764 177 NFIGIVLVIFGGLVVYLVTEPDYKRIE 203 (214)
T ss_pred HHHHHHHHHHHHHHHHhccCcccCCCC
Confidence 445555555566666666554444433
No 115
>COG4146 Predicted symporter [General function prediction only]
Probab=42.84 E-value=2.9e+02 Score=25.97 Aligned_cols=109 Identities=9% Similarity=-0.044 Sum_probs=53.4
Q ss_pred hHHHHHHhHhhhhhhccccc----cchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccC
Q 021145 32 PYAVILSFLVSQYSLYGYDS----AAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAG 107 (317)
Q Consensus 32 ~~~~~~a~~~~~~af~G~e~----~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~ 107 (317)
+.+.+.++...-+.|.--+. =+-.+.+.+..+|-+-.+-..-+....++ .+.-+...... +++.+.+. .
T Consensus 244 w~a~fTGll~vN~FYWcTNQ~IvQRtLaak~LaeGQKG~Llaa~fk~~~pl~L-vLPGliafhly---gdL~~aDm---a 316 (571)
T COG4146 244 WGAAFTGLLLVNTFYWCTNQGIVQRTLAAKSLAEGQKGALLAAVFKMLDPLVL-VLPGLIAFHLY---GDLPKADM---A 316 (571)
T ss_pred HHHHHHhHhhhheeeeeccHHHHHHHHhhhhhhccccccHHHHHHHHhchHHh-hhhHHHHHHHh---ccCCcccc---c
Confidence 34578888877766643332 24445555555554433333222222221 11222222222 33434343 3
Q ss_pred CchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021145 108 AFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVV 155 (317)
Q Consensus 108 ~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 155 (317)
+| ....+.+ +....-++....+-+.+++.|+...+++.+.
T Consensus 317 YP---~LVn~Vl-----Pv~l~GFf~AvLFGAilStFN~fLNSa~Tlf 356 (571)
T COG4146 317 YP---TLVNNVL-----PVPLVGFFGAVLFGAILSTFNGFLNSASTLF 356 (571)
T ss_pred cH---HHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 45 4454554 2334555666666677777777777766543
No 116
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=42.76 E-value=3.3e+02 Score=26.59 Aligned_cols=98 Identities=6% Similarity=-0.163 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHHHHHHhhhcccHHHHHH
Q 021145 128 GAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTA 207 (317)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~ 207 (317)
+..++....++..+....+...+.+-.+-.++.+|.-+ +. ..+|...=.|++.+..+-. .++..+..+..+.
T Consensus 403 l~~i~~~l~~il~~if~vTsaDS~t~vla~~ts~g~~~--~~---~p~~~~ri~W~v~ig~ia~---~Ll~~GGl~~lQt 474 (504)
T PRK03356 403 LSTATMWGFFILCFIATVTLINACSYTLAMSTCREVRD--GE---EPPLLVRIGWSILVGIIGI---VLLALGGLKPIQT 474 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHcCCCCC--CC---CCCcchhhHHHHHHHHHHH---HHHHhcCHHHHHH
Confidence 34445555555555555666666666666666655333 11 1112222334443333222 2223444666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021145 208 ITSICTIGWVGGYAVPIFARMVMAEQ 233 (317)
Q Consensus 208 l~~~~~~~~~~~y~~~~~~~~~~~~~ 233 (317)
...+..+-..+...+.+.+.++..|+
T Consensus 475 ~sii~alPf~~i~~l~~~sl~k~l~~ 500 (504)
T PRK03356 475 AIIAGGCPLFFVNIMVTLSFIKDAKQ 500 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666666666666644444
No 117
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=42.27 E-value=3.4e+02 Score=26.50 Aligned_cols=118 Identities=14% Similarity=0.084 Sum_probs=63.1
Q ss_pred hHHHHHHhHhhhhhh-ccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcc--------CchhhhcCC
Q 021145 32 PYAVILSFLVSQYSL-YGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQ--------DFSYLYDKS 102 (317)
Q Consensus 32 ~~~~~~a~~~~~~af-~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~--------~~~~~~~~~ 102 (317)
..-...|+..++|+. .|+-...+++.=.|+ +.|++|........-....++..++...++. +.+++.+..
T Consensus 248 ~~vW~~A~~Q~ffsl~ig~G~~it~~Sy~~~-~~n~~~~a~~v~~~~~~~sllag~~if~~~g~~a~~~~~~i~~v~~~g 326 (523)
T PF00209_consen 248 PKVWIAALGQVFFSLSIGFGIMITYGSYNKF-KNNIFRDALIVAFINTLVSLLAGLVIFSVLGFLANELGVPISDVPESG 326 (523)
T ss_dssp HHHHHHHHHHHHHHTTTTSSHHHHHHTTS-T-TS-SHHHHHHHHHHHHHHHHTTGTHHHHHHHHHHHHHHHHHHH--H-C
T ss_pred HHHHHHHHHHHhhccCCCcceEEEEcCcCCC-CccccccceEEEcCchhhhHhHHHHHHhHHhhcccCCCCChhHhhCcC
Confidence 344577888888888 688888888888776 6788887666666665555544433333321 111221111
Q ss_pred CcccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021145 103 NETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVV 155 (317)
Q Consensus 103 ~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 155 (317)
. + - ....+...+++..+++....+.-...++..+++..+.+-.....+
T Consensus 327 ~---~-L-~Fi~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~~E~iv~~l 374 (523)
T PF00209_consen 327 P---G-L-AFIVLPEAFSQMPGGRFWAILFFLMLFLAGLTSQISMLEVIVSAL 374 (523)
T ss_dssp H---H-H-HHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C---C-c-hHHHHHHHHHcCCCCcChHHHHHHHHHHHHhhhcCCceeceeEee
Confidence 1 1 0 122344455554455555555555666666666655554444433
No 118
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=41.45 E-value=35 Score=28.89 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=25.0
Q ss_pred cchhhhhccCcc-cchhhHHHHHHHHHHHHHHHHH
Q 021145 52 AAHLTEETKGAD-KTGPIAILSSIGIISIFGWALI 85 (317)
Q Consensus 52 ~~~~~~E~k~P~-r~ip~ai~~~~~~~~i~yil~~ 85 (317)
+.-..|-..||| |.+||+++.+.+...+.-+...
T Consensus 200 IgGTIEGfHDPKFKr~p~~vias~vaS~~~gii~v 234 (240)
T PRK00968 200 IGGTIEGFHDPKFKRWPRAVIASFVASLVCGIVAV 234 (240)
T ss_pred cCceeecCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence 344457778998 8999999998887766555443
No 119
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=38.37 E-value=1.1e+02 Score=22.16 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhheeeeccce
Q 021145 282 VALGVGLGLIMLWWLLDARKW 302 (317)
Q Consensus 282 ~~~~~~~~~~~v~~~~~~~~~ 302 (317)
.+++.++.+|.++|-.|.|+=
T Consensus 52 FI~giil~lG~~i~s~ygr~C 72 (92)
T PF05767_consen 52 FILGIILTLGIVIFSMYGRYC 72 (92)
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 445566667777776665443
No 120
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=38.22 E-value=1.1e+02 Score=19.94 Aligned_cols=26 Identities=8% Similarity=0.160 Sum_probs=20.7
Q ss_pred HHhHhhhhhhccccccchhhhhccCc
Q 021145 37 LSFLVSQYSLYGYDSAAHLTEETKGA 62 (317)
Q Consensus 37 ~a~~~~~~af~G~e~~~~~~~E~k~P 62 (317)
..+-..+|+|.|...-.+.-++.++.
T Consensus 3 ~~~~sVl~af~GVqs~~~~e~Df~~~ 28 (56)
T PF11174_consen 3 QVVKSVLWAFFGVQSSKNRERDFAQG 28 (56)
T ss_pred HHHHHHHHHHhCcCcchhHHHHHHcC
Confidence 34567789999999998888887664
No 121
>PRK09917 hypothetical protein; Provisional
Probab=38.17 E-value=83 Score=25.41 Aligned_cols=75 Identities=15% Similarity=0.005 Sum_probs=37.1
Q ss_pred CCChHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCCCcccCCchhHHHHHHH
Q 021145 177 HKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAF 254 (317)
Q Consensus 177 ~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 254 (317)
++.|.+++..+++.+.+.-.++... .+.-.+...-.......+.+.+...-||++.+..-|..|..-+.++....
T Consensus 28 fn~P~r~l~~~~i~G~vgw~vy~~~---~~~~~~~~~asfiaa~~igl~s~~~Ar~~k~P~tvf~ip~iiPLVPG~~~ 102 (157)
T PRK09917 28 FNVPVRALRWCALLGAIGHGSRMLM---MTSGLNIEWSTFMASMLVGTIGIQWSRWYLAHPKVFTVAAVIPMFPGISA 102 (157)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHH---HHcCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCEEeeHhhHHhcCCCHHH
Confidence 3578888888877776554322110 01001122222334444555566655665555555666654444444333
No 122
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=37.21 E-value=1.2e+02 Score=21.83 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=7.8
Q ss_pred HHHHHHHHhhheeeec
Q 021145 284 LGVGLGLIMLWWLLDA 299 (317)
Q Consensus 284 ~~~~~~~~~v~~~~~~ 299 (317)
++.++.+|++.|-.|+
T Consensus 55 lG~vl~lGilifs~y~ 70 (91)
T PHA02680 55 VGAVLLLGLFVFSMYR 70 (91)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3344445555554444
No 123
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=36.11 E-value=4.4e+02 Score=26.02 Aligned_cols=160 Identities=13% Similarity=-0.004 Sum_probs=88.0
Q ss_pred ccchhhhhccCccc-chhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHHHHHHhccccCChhHH
Q 021145 51 SAAHLTEETKGADK-TGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGA 129 (317)
Q Consensus 51 ~~~~~~~E~k~P~r-~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~ 129 (317)
....++.-+--+-. .-|-+++++.++++.+-+..++.+.=.. +.+..+.. +-.......+..+ ++...
T Consensus 65 ~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~---Sa~PtsGg-------Ly~waa~lap~k~-~~~~s 133 (550)
T KOG1289|consen 65 LLPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELC---SAMPTSGG-------LYFWAAVLAPPKY-GPFAS 133 (550)
T ss_pred chhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHH---hhCCCCCc-------HHHHHHHhcCcch-hhHHH
Confidence 33444444433333 4577889998888877666666554222 12222221 3334444443332 35566
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhccC---CCCCccccceeccCCCCChHHHHHHHHHHHHHHHhhhcccHHHHH
Q 021145 130 IILLIVIWGSFFFGGLSVTTSAARVVYALSRD---KGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFT 206 (317)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d---~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~ 206 (317)
++......++......+..++.+.+++++..- +.-| + +++.-...-.++ .+..++...+...+.
T Consensus 134 w~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~--~-------~~~~~~v~~ai~----~v~~lln~~p~r~l~ 200 (550)
T KOG1289|consen 134 WVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEP--T-------NYHQFGVFEAIL----FVHGLLNSLPTRVLA 200 (550)
T ss_pred HHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCcc--c-------ceEeehHHHHHH----HHHHHHhcCCcHHHH
Confidence 77777777777777777777778777766432 2333 1 122222222222 222222233356777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 021145 207 AITSICTIGWVGGYAVPIFARMVMAEQK 234 (317)
Q Consensus 207 ~l~~~~~~~~~~~y~~~~~~~~~~~~~~ 234 (317)
.+..++....++.+.+..+..+....++
T Consensus 201 ~I~~~~~~~~ll~~~i~~I~lla~~~~k 228 (550)
T KOG1289|consen 201 RINSVSVYLNLLFLVILMITLLAASSKK 228 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCC
Confidence 7888888888888887777776555554
No 124
>PHA02898 virion envelope protein; Provisional
Probab=35.00 E-value=81 Score=22.65 Aligned_cols=20 Identities=15% Similarity=-0.009 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhheeeeccc
Q 021145 282 VALGVGLGLIMLWWLLDARK 301 (317)
Q Consensus 282 ~~~~~~~~~~~v~~~~~~~~ 301 (317)
.+++.++++|.+.|-.|+|+
T Consensus 52 FIlgivl~lG~~ifs~y~r~ 71 (92)
T PHA02898 52 FILAIILILGIIFFKGYNMF 71 (92)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 45666667777777666654
No 125
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=33.45 E-value=32 Score=31.02 Aligned_cols=22 Identities=18% Similarity=0.313 Sum_probs=13.9
Q ss_pred HHHHHHHHhhheeeeccceecC
Q 021145 284 LGVGLGLIMLWWLLDARKWFTG 305 (317)
Q Consensus 284 ~~~~~~~~~v~~~~~~~~~~~~ 305 (317)
++++++++++.|++.|||.+.|
T Consensus 281 La~lvlivLiaYli~Rrr~~~g 302 (306)
T PF01299_consen 281 LAGLVLIVLIAYLIGRRRSRAG 302 (306)
T ss_pred HHHHHHHHHHhheeEecccccc
Confidence 3445555666777777776664
No 126
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=33.16 E-value=1.6e+02 Score=25.67 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhccCcCCCcccCCchhHHHHHHHH
Q 021145 222 VPIFARMVMAEQKFNAGPFYLGKASRPICLIAFL 255 (317)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 255 (317)
+...+..+-+|+++++.||-..+..++.+.+..+
T Consensus 34 ~~l~~~~~~~~~~d~~~pyG~~r~E~l~~l~~~~ 67 (268)
T TIGR01297 34 IALLALRISRRPADERHPFGHGRAEILAALLNGL 67 (268)
T ss_pred HHHHHHHHhCCCCCCCCCCchHHHHHHHHHHHHH
Confidence 3333333444445556666555444444443333
No 127
>PRK10489 enterobactin exporter EntS; Provisional
Probab=32.96 E-value=3.3e+02 Score=25.09 Aligned_cols=11 Identities=18% Similarity=0.395 Sum_probs=4.4
Q ss_pred ceecCCccccc
Q 021145 301 KWFTGPVRNID 311 (317)
Q Consensus 301 ~~~~~~~~~~~ 311 (317)
|+++.++.+++
T Consensus 403 ~~~~~~~~~~~ 413 (417)
T PRK10489 403 RRFRQTPPEVD 413 (417)
T ss_pred cccccccccCC
Confidence 33334444433
No 128
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=31.08 E-value=49 Score=20.05 Aligned_cols=17 Identities=18% Similarity=0.087 Sum_probs=7.3
Q ss_pred HHHHHHHhhheeeeccc
Q 021145 285 GVGLGLIMLWWLLDARK 301 (317)
Q Consensus 285 ~~~~~~~~v~~~~~~~~ 301 (317)
.+.++++.++++.|||+
T Consensus 23 vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 23 VIIIVLGAFLFFWYRRK 39 (40)
T ss_pred HHHHHHHHHhheEEecc
Confidence 33344444444444443
No 129
>PRK09546 zntB zinc transporter; Reviewed
Probab=30.61 E-value=81 Score=28.62 Aligned_cols=9 Identities=33% Similarity=0.689 Sum_probs=3.8
Q ss_pred hheeeeccc
Q 021145 293 LWWLLDARK 301 (317)
Q Consensus 293 v~~~~~~~~ 301 (317)
.+++++||+
T Consensus 314 ~~~~fkrk~ 322 (324)
T PRK09546 314 VAWWLKRSK 322 (324)
T ss_pred HHHHHHhcc
Confidence 344444443
No 130
>PHA03049 IMV membrane protein; Provisional
Probab=30.33 E-value=43 Score=22.60 Aligned_cols=20 Identities=10% Similarity=-0.115 Sum_probs=11.2
Q ss_pred HHHHHHHhhheeeeccceec
Q 021145 285 GVGLGLIMLWWLLDARKWFT 304 (317)
Q Consensus 285 ~~~~~~~~v~~~~~~~~~~~ 304 (317)
+-+.+++++.|-+|+|+...
T Consensus 10 ICVaIi~lIvYgiYnkk~~~ 29 (68)
T PHA03049 10 ICVVIIGLIVYGIYNKKTTT 29 (68)
T ss_pred HHHHHHHHHHHHHHhccccc
Confidence 33445566666666665543
No 131
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=29.76 E-value=72 Score=26.12 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=23.8
Q ss_pred chhhhhccCcc-cchhhHHHHHHHHHHHHHHHHH
Q 021145 53 AHLTEETKGAD-KTGPIAILSSIGIISIFGWALI 85 (317)
Q Consensus 53 ~~~~~E~k~P~-r~ip~ai~~~~~~~~i~yil~~ 85 (317)
.-..|-..||| |.+||+++.+.+...+.-++..
T Consensus 191 GGTIEGfHDPKfkk~pk~vias~vasil~~iia~ 224 (230)
T COG4060 191 GGTIEGFHDPKFKKLPKAVIASLVASILAGIIAV 224 (230)
T ss_pred CceeecccChhhhccchHHHHHHHHHHHHHHHHH
Confidence 33456778998 8999999988877666554433
No 132
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=29.13 E-value=6.6e+02 Score=25.99 Aligned_cols=59 Identities=5% Similarity=-0.126 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHHHHHHh
Q 021145 136 IWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGL 196 (317)
Q Consensus 136 ~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~~~~~ 196 (317)
+++..--+....+...-|+-..+.+ |.=+ .+-..+-.++...|.....++.+++.+..+
T Consensus 324 lil~iGi~Vd~~Ivi~eri~e~l~~-g~~~-~~Ai~~a~~~~~~~il~t~lTTii~~lpL~ 382 (755)
T PRK13024 324 LVLGIGMAVDANVLIFERIKEELRK-GKSL-KKAFKKGFKNAFSTILDSNITTLIAAAILF 382 (755)
T ss_pred HHHHHHHHHhCcEEehHHHHHHHHc-CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333445555666677666533 2212 122222222444566555555555554443
No 133
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=28.85 E-value=5.3e+02 Score=24.73 Aligned_cols=53 Identities=11% Similarity=0.060 Sum_probs=35.5
Q ss_pred HHHHHhHhhhhhh-ccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHH
Q 021145 34 AVILSFLVSQYSL-YGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILA 87 (317)
Q Consensus 34 ~~~~a~~~~~~af-~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~ 87 (317)
-+..|+..++|+. .|+-..-++++=.++ +.|+++.-......-...-++.-++
T Consensus 215 v~~~AlGQ~FFsLSlG~g~mitYsSYL~k-~~~l~~sa~~v~~~n~~~s~lAGl~ 268 (439)
T COG0733 215 VWLAALGQAFFSLSLGFGIMITYSSYLSK-KSDLVSSALSIVLLNTLISLLAGLV 268 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCc-ccchhhhHHHHHHHHHHHHHHHHHH
Confidence 3667777777777 577777777777665 6888887776666655554444433
No 134
>COG1079 Uncharacterized ABC-type transport system, permease component [General function prediction only]
Probab=28.82 E-value=1.7e+02 Score=26.52 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=17.9
Q ss_pred CCChHHHHHHHHHHHHHHHhhh
Q 021145 177 HKVPSNAVWLCAAICIILGLPI 198 (317)
Q Consensus 177 ~~~P~~a~~~~~~i~~~~~~~~ 198 (317)
.++|+.+++...+.+.++.++.
T Consensus 59 t~spw~gl~~a~l~g~l~~ll~ 80 (304)
T COG1079 59 TGSPWLGLLAAALVGALFGLLH 80 (304)
T ss_pred cccHHHHHHHHHHHHHHHHHHH
Confidence 4789999999988888887754
No 135
>PF14494 DUF4436: Domain of unknown function (DUF4436)
Probab=28.63 E-value=2.9e+02 Score=24.34 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCC
Q 021145 248 PICLIAFLWICYTCSVFLLPTFYPI 272 (317)
Q Consensus 248 ~i~~~~~~~~~~~~~~~~~~~~~~~ 272 (317)
.+++.+..+.++.-+=...|...|.
T Consensus 202 ~l~w~aA~LFAlp~lRN~lPGaPP~ 226 (256)
T PF14494_consen 202 MLTWMAAMLFALPPLRNILPGAPPI 226 (256)
T ss_pred hHHHHHHHHHhhhhHhccCCCCCCC
Confidence 5666776666666666677765544
No 136
>PRK15028 cytochrome bd-II oxidase subunit 2; Provisional
Probab=28.20 E-value=3.2e+02 Score=25.64 Aligned_cols=22 Identities=14% Similarity=0.239 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHhhCCC
Q 021145 247 RPICLIAFLWICYTCSVFLLPT 268 (317)
Q Consensus 247 ~~i~~~~~~~~~~~~~~~~~~~ 268 (317)
...+...+...+.......+|.
T Consensus 291 F~~s~~~~~~~~~~~~~~lfP~ 312 (378)
T PRK15028 291 FLMASLMQFGVIFTAGITLFPF 312 (378)
T ss_pred HHHHHHHHHHHHHHHHHHhCCc
Confidence 3444444555555555566664
No 137
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=27.78 E-value=5.3e+02 Score=24.39 Aligned_cols=55 Identities=5% Similarity=0.073 Sum_probs=41.6
Q ss_pred HHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCC
Q 021145 111 PAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIP 165 (317)
Q Consensus 111 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP 165 (317)
+.+......|+.-|+..-..++....+-+.-|+..+...+.+++..-.=++.-.|
T Consensus 77 l~~~~~~~~g~~~Ggla~~~v~as~~fgaisGS~~A~~a~~G~i~iP~M~k~GY~ 131 (416)
T PF06808_consen 77 LIDFANALVGRVRGGLAQVAVVASALFGAISGSSVANAAAIGSITIPEMKKAGYP 131 (416)
T ss_pred HHHHHHHHhCCCCccchhHHHHHHHHHHHhccchHhHHHHHHHHHHHHHHHcCCC
Confidence 6678888888887888777888877888888888888888888876544444444
No 138
>COG3610 Uncharacterized conserved protein [Function unknown]
Probab=27.74 E-value=2.2e+02 Score=23.01 Aligned_cols=70 Identities=16% Similarity=0.200 Sum_probs=37.6
Q ss_pred CChHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCCCcccCCchhHH
Q 021145 178 KVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPI 249 (317)
Q Consensus 178 ~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 249 (317)
+.|.+.+..+..++...-+.+....+.++. +...-..+.+..+.+++.++-|+.+.++.-+.+|..-+.+
T Consensus 25 nvp~~~l~~~~~~g~~g~~v~~l~~~~~g~--~~~~atfiaa~~vg~lg~~~sr~~k~p~~v~~vpaIiPlV 94 (156)
T COG3610 25 NVPPRALPICGFLGALGWVVYYLLGKHFGF--SIVVATFIAAFVVGCLGNLLSRRYKTPAKVFTVPAIIPLV 94 (156)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHHHHhcCChhhhecchhhhcC
Confidence 567777777777766554433221121221 1222233455566777777777776666667766544444
No 139
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=27.36 E-value=89 Score=28.11 Aligned_cols=12 Identities=8% Similarity=0.301 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 021145 248 PICLIAFLWICY 259 (317)
Q Consensus 248 ~i~~~~~~~~~~ 259 (317)
.+.+++.++...
T Consensus 260 ~LTvvt~IflP~ 271 (318)
T TIGR00383 260 ILTVVSTIFIPL 271 (318)
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 140
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
Probab=27.27 E-value=3.3e+02 Score=23.52 Aligned_cols=42 Identities=7% Similarity=-0.137 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhhhccCcCCCcccCCchhHHHHHHHHHHHH
Q 021145 217 VGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICY 259 (317)
Q Consensus 217 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 259 (317)
.+.+.+...+.+..-..+++.|+++.. ....+++.+++..--
T Consensus 122 ~iiW~lal~Gi~~kl~~~~~~r~ls~~-~yl~mGw~~v~~~~~ 163 (226)
T COG1272 122 GLIWGLALAGILFKLFFKKRFRKLSLV-LYLAMGWLGLIVIKP 163 (226)
T ss_pred HHHHHHHHHHHhhhhhccCcCceeeeh-hhHHHHHHHHHHHHH
Confidence 344455555544333333445555555 555666666554433
No 141
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=26.71 E-value=2.9e+02 Score=21.02 Aligned_cols=22 Identities=32% Similarity=0.267 Sum_probs=14.8
Q ss_pred CCCChHHHHHHHHHHHHHHHhh
Q 021145 176 KHKVPSNAVWLCAAICIILGLP 197 (317)
Q Consensus 176 r~~~P~~a~~~~~~i~~~~~~~ 197 (317)
|.+.+....++..++..+...+
T Consensus 27 k~~~~~~~~~~~~~v~i~~~~~ 48 (146)
T PF14667_consen 27 KTKWPFIITLIGAIVNIILNYI 48 (146)
T ss_pred CchHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777666553
No 142
>PRK06433 NADH dehydrogenase subunit J; Provisional
Probab=25.88 E-value=2.6e+02 Score=20.15 Aligned_cols=19 Identities=0% Similarity=-0.146 Sum_probs=11.2
Q ss_pred ChHHHHHHHHHHHHHHHhh
Q 021145 179 VPSNAVWLCAAICIILGLP 197 (317)
Q Consensus 179 ~P~~a~~~~~~i~~~~~~~ 197 (317)
.|.++.+...........+
T Consensus 27 n~v~svl~l~~~~~~~a~l 45 (88)
T PRK06433 27 DVWHSALYLGVALFSVAVL 45 (88)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 5777766666555544443
No 143
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=25.45 E-value=3.5e+02 Score=26.14 Aligned_cols=13 Identities=8% Similarity=0.230 Sum_probs=7.2
Q ss_pred ccHHHHHHHHHHH
Q 021145 200 KVNVVFTAITSIC 212 (317)
Q Consensus 200 ~~~~~~~~l~~~~ 212 (317)
.+.+.|+.+.++.
T Consensus 194 HPTqLYEsi~~ll 206 (460)
T PRK13108 194 QPTFLYELIWNVL 206 (460)
T ss_pred CchHHHHHHHHHH
Confidence 4466677655443
No 144
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=25.43 E-value=96 Score=28.17 Aligned_cols=56 Identities=9% Similarity=0.062 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhCC---CCCCCCCCCccchHHHHHHHHHHHhhheeeeccc
Q 021145 246 SRPICLIAFLWICYTCSVFLLP---TFYPISWDTFNYAPVALGVGLGLIMLWWLLDARK 301 (317)
Q Consensus 246 ~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 301 (317)
-+.+++++.++..-.++...+- ...|.......|..+.+..+++.++.+++++|++
T Consensus 262 mk~LTi~s~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~~~~~~~~~~frrk~ 320 (322)
T COG0598 262 MKILTIVSTIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILMLLLALLLYLYFRRKG 320 (322)
T ss_pred HHHHHHHHHHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455555555554444433322 2223222223333333334444444444444443
No 145
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=23.73 E-value=4.4e+02 Score=26.30 Aligned_cols=117 Identities=10% Similarity=0.015 Sum_probs=62.8
Q ss_pred hHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcc---Cch-----hhhcCCC
Q 021145 32 PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQ---DFS-----YLYDKSN 103 (317)
Q Consensus 32 ~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~---~~~-----~~~~~~~ 103 (317)
.|.++.+-.....++.|.+...---==.-...|...+++........+...+..+.-....- +-| .....+.
T Consensus 238 ~W~~~~Gg~~~~l~~~~vnQ~~VQR~lsl~slk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~Cdpl~~g~v~~~D~ 317 (585)
T KOG2349|consen 238 PWSLLFGGTIMWLSYYGVNQLIVQRYLSLPSLKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTDCDPLCGGLVGCPDQ 317 (585)
T ss_pred chhHhcCCcHHHHHHHhhhHHHHhHHhccccHHHhhhhhhhhhhHHHHHHHhhcccceeEeeecccCCcccccccCCccc
Confidence 34466666666666777666532111111123445566666655555544443332222110 111 1112221
Q ss_pred cccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 021145 104 ETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYA 157 (317)
Q Consensus 104 ~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 157 (317)
..| ....+.+++..| ..-++..+++-+.++++.+.+++.|-+.+.
T Consensus 318 ---~~P---~fV~d~~~~~pG---l~GLfia~vfsA~LSsLSS~~NS~s~v~~e 362 (585)
T KOG2349|consen 318 ---LLP---LFVMDLMGHLPG---LRGLFIAVVFSAALSSLSSIFNSLSTVFLE 362 (585)
T ss_pred ---ccc---HHHHHhcCCCCC---ccchhHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 124 577788876655 455677788888888888888888877654
No 146
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=23.40 E-value=3.4e+02 Score=23.86 Aligned_cols=23 Identities=4% Similarity=0.018 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 021145 132 LLIVIWGSFFFGGLSVTTSAARV 154 (317)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~sR~ 154 (317)
+-+..+++.+.+.--..+-.-|.
T Consensus 72 lk~sl~~g~~la~P~ilyqiw~F 94 (258)
T PRK10921 72 IKLTFMVSLILSAPVILYQVWAF 94 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333
No 147
>PHA03048 IMV membrane protein; Provisional
Probab=22.78 E-value=2.8e+02 Score=20.00 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhheeeeccce
Q 021145 282 VALGVGLGLIMLWWLLDARKW 302 (317)
Q Consensus 282 ~~~~~~~~~~~v~~~~~~~~~ 302 (317)
.+++.++.+|++.|..|+|+=
T Consensus 51 FIlgivl~lG~~ifsmy~r~C 71 (93)
T PHA03048 51 FVLGIVMTIGMLIYSMWGRYC 71 (93)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 455666677777776666543
No 148
>PHA03164 hypothetical protein; Provisional
Probab=22.65 E-value=93 Score=21.64 Aligned_cols=33 Identities=18% Similarity=0.120 Sum_probs=25.4
Q ss_pred hhhhhccCcccchhhHHHHHHHHHHHHHHHHHH
Q 021145 54 HLTEETKGADKTGPIAILSSIGIISIFGWALIL 86 (317)
Q Consensus 54 ~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~ 86 (317)
...+|.+|-||+..--+..+.+++.++++...+
T Consensus 46 tawnlwnnrRktftFlvLtgLaIamILfiifvl 78 (88)
T PHA03164 46 TAWNLWNNRRKTFTFLVLTGLAIAMILFIIFVL 78 (88)
T ss_pred hhHHHHHhhhheeehHHHHHHHHHHHHHHHHHH
Confidence 455788998999988888888888887766443
No 149
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=22.49 E-value=97 Score=22.92 Aligned_cols=19 Identities=11% Similarity=0.134 Sum_probs=9.9
Q ss_pred HHHHHhhheeeeccceecC
Q 021145 287 GLGLIMLWWLLDARKWFTG 305 (317)
Q Consensus 287 ~~~~~~v~~~~~~~~~~~~ 305 (317)
++++..++|++..|++++.
T Consensus 75 lVily~IyYFVILRer~~~ 93 (101)
T PF06024_consen 75 LVILYAIYYFVILRERQKS 93 (101)
T ss_pred HHHHhhheEEEEEeccccc
Confidence 3344446676655555443
No 150
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=22.40 E-value=9.3e+02 Score=25.40 Aligned_cols=15 Identities=13% Similarity=-0.270 Sum_probs=8.3
Q ss_pred HHHHHHhhhhhhhhh
Q 021145 144 GLSVTTSAARVVYAL 158 (317)
Q Consensus 144 ~~~~~~~~sR~l~~~ 158 (317)
.-..+...=|+-..+
T Consensus 438 VD~~IVI~ErIreel 452 (855)
T PRK14726 438 VDSNVLIYERIREEE 452 (855)
T ss_pred hCceEEeHHHHHHHH
Confidence 344555556666555
No 151
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=22.27 E-value=77 Score=23.27 Aligned_cols=10 Identities=20% Similarity=0.989 Sum_probs=4.5
Q ss_pred Hhhheeeecc
Q 021145 291 IMLWWLLDAR 300 (317)
Q Consensus 291 ~~v~~~~~~~ 300 (317)
.+.||+++||
T Consensus 85 ~l~w~f~~r~ 94 (96)
T PTZ00382 85 FLCWWFVCRG 94 (96)
T ss_pred HHhheeEEee
Confidence 3445544443
No 152
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=21.80 E-value=6.7e+02 Score=23.48 Aligned_cols=21 Identities=10% Similarity=0.070 Sum_probs=12.7
Q ss_pred CCCChHHHHHHHHHHHHHHHh
Q 021145 176 KHKVPSNAVWLCAAICIILGL 196 (317)
Q Consensus 176 r~~~P~~a~~~~~~i~~~~~~ 196 (317)
|++.+.+.+.+..+++.+..+
T Consensus 63 r~~~~~~~l~~~~l~~~~~~~ 83 (400)
T PF03825_consen 63 RFGSAKRILALLSLLSALALL 83 (400)
T ss_pred HhhhHHHHHHHHHHHHHHHHH
Confidence 556666777666666555443
No 153
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=21.68 E-value=4.8e+02 Score=21.82 Aligned_cols=13 Identities=8% Similarity=0.174 Sum_probs=7.8
Q ss_pred CChHHHHHHHHHH
Q 021145 178 KVPSNAVWLCAAI 190 (317)
Q Consensus 178 ~~P~~a~~~~~~i 190 (317)
+.|+++.+.....
T Consensus 26 ~n~v~s~l~Li~~ 38 (198)
T PRK06638 26 RNPVHSALFLILT 38 (198)
T ss_pred ccHHHHHHHHHHH
Confidence 3588876655443
No 154
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=21.42 E-value=56 Score=25.24 Aligned_cols=25 Identities=28% Similarity=0.201 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHh-hheeeeccceec
Q 021145 280 APVALGVGLGLIM-LWWLLDARKWFT 304 (317)
Q Consensus 280 ~~~~~~~~~~~~~-v~~~~~~~~~~~ 304 (317)
.....+.++++.. ++|..+.||+++
T Consensus 86 vlLs~GLmlL~~~alcW~~~~rkK~~ 111 (129)
T PF15099_consen 86 VLLSLGLMLLACSALCWKPIIRKKKK 111 (129)
T ss_pred HHHHHHHHHHHhhhheehhhhHhHHH
Confidence 4444555554444 666555444443
No 155
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=21.27 E-value=32 Score=30.58 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhheeeeccc
Q 021145 282 VALGVGLGLIMLWWLLDARK 301 (317)
Q Consensus 282 ~~~~~~~~~~~v~~~~~~~~ 301 (317)
..+++++++.+++.++.|||
T Consensus 56 ~sfAvvliiIIiIImlF~Rr 75 (381)
T PF05297_consen 56 YSFAVVLIIIIIIIMLFKRR 75 (381)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555455554
No 156
>PRK13476 cytochrome b6-f complex subunit IV; Provisional
Probab=20.86 E-value=4.6e+02 Score=21.27 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=18.8
Q ss_pred CCCcccCCchhHHHHHHHHHHHHHHHHhhCCCC
Q 021145 237 AGPFYLGKASRPICLIAFLWICYTCSVFLLPTF 269 (317)
Q Consensus 237 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 269 (317)
+++++.| ....+-+++.+.++++.+....|.+
T Consensus 121 ~~~~~rP-v~~~~fl~~~~~~~~Lg~~~~~P~~ 152 (160)
T PRK13476 121 QNPFRRP-VATAVFLFGTVVTLYLGIGATLPID 152 (160)
T ss_pred cCcccCc-HHHHHHHHHHHHHHHHHhcccCCcc
Confidence 4455545 5556666666666666666655543
No 157
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=20.72 E-value=6.3e+02 Score=22.79 Aligned_cols=29 Identities=7% Similarity=-0.041 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhhhccCcCCCcccCCch
Q 021145 218 GGYAVPIFARMVMAEQKFNAGPFYLGKAS 246 (317)
Q Consensus 218 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (317)
+..++..++..+-+|++.++++|-..|..
T Consensus 62 ~al~lal~A~~~a~r~~~~~~TfGy~R~e 90 (296)
T COG1230 62 LALLLALIAIKLARRPATKRFTFGYKRLE 90 (296)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCccHhHHH
Confidence 34455566666666666555555444433
No 158
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=20.64 E-value=6.1e+02 Score=22.62 Aligned_cols=63 Identities=6% Similarity=-0.028 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHHHHHHh
Q 021145 134 IVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGL 196 (317)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~~~~~ 196 (317)
.+.+...--+.+..+.-..|+-..+.+++..+..+...+-..+.-.|..-..+..+++.+..+
T Consensus 184 aall~liG~sVnd~Ivv~drire~~~~~~~~~~~~av~~a~~~~~~~~l~TslTTl~~~l~L~ 246 (289)
T PRK13022 184 AALLTIIGYSLNDTVVVFDRIRENFRKIRRKTFAEIINLSINQTLSRTIITSLTTLLVVLALY 246 (289)
T ss_pred HHHHHHHHHheeceEEEeeHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444566677777777666543212221122222111234455555555555544443
No 159
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=20.49 E-value=4.1e+02 Score=25.03 Aligned_cols=33 Identities=9% Similarity=-0.220 Sum_probs=17.3
Q ss_pred ccccchhhhhccCcccchhhHHHHHHHHHHHHHH
Q 021145 49 YDSAAHLTEETKGADKTGPIAILSSIGIISIFGW 82 (317)
Q Consensus 49 ~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yi 82 (317)
.-..+.++...|++++ -.+...++.....+...
T Consensus 218 ~~~~~DysRy~~~~~~-~~~~~~~~~~~~~~~~~ 250 (440)
T PF02133_consen 218 APNASDYSRYAKSDTS-AWWGFWLGFPGGFIPFV 250 (440)
T ss_dssp HCCCHHHHTTC--HHH-HHHHHHHHHHHHHHHHH
T ss_pred hhccccHHhhCCCCCC-cEEEEeehhhhHHHHHH
Confidence 3445678888887644 44555555544444433
No 160
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=20.45 E-value=93 Score=23.73 Aligned_cols=34 Identities=9% Similarity=-0.122 Sum_probs=24.3
Q ss_pred ccccccchhhhhccCcccchhhHHHHHHHHHHHH
Q 021145 47 YGYDSAAHLTEETKGADKTGPIAILSSIGIISIF 80 (317)
Q Consensus 47 ~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~ 80 (317)
.+.+.-..-.+|+|+|.|.+-++..+....+.++
T Consensus 32 d~~~~~~~~~s~tr~P~k~i~lavvL~~fg~Lli 65 (124)
T KOG4753|consen 32 DIQIDYSYKVSNTRHPVKEIALAVVLLVFGLLLI 65 (124)
T ss_pred cceeecccccCCCCCchHHHHHHHHHHHHHHHHH
Confidence 4455556667888999998888887776555443
No 161
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=20.40 E-value=7.7e+02 Score=23.67 Aligned_cols=48 Identities=19% Similarity=0.326 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHHHHHHh
Q 021145 138 GSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGL 196 (317)
Q Consensus 138 ~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~~~~~ 196 (317)
++.+++.....++.|+.+..+=-||.-| |.|- -.++++++++.+++..
T Consensus 66 lG~i~s~f~i~YG~sKf~~G~~sDr~np--r~fm---------~~gLilsai~nil~Gf 113 (448)
T COG2271 66 LGILGSAFSITYGVSKFVMGVLSDRSNP--RYFM---------AFGLILSAIVNILFGF 113 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCC--ceee---------hHHHHHHHHHHHHHhh
Confidence 4556677788899999988887787777 5442 2356666666666554
No 162
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=20.35 E-value=4e+02 Score=20.33 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=9.1
Q ss_pred HHHHHHHHhhheeeeccce
Q 021145 284 LGVGLGLIMLWWLLDARKW 302 (317)
Q Consensus 284 ~~~~~~~~~v~~~~~~~~~ 302 (317)
+.+++.++++.|..+|-+.
T Consensus 95 fp~il~l~L~~Wi~~kl~~ 113 (117)
T PF07226_consen 95 FPSILCLILVFWIGYKLGF 113 (117)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4444455555554444333
Done!