Query 021145
Match_columns 317
No_of_seqs 116 out of 1537
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 13:24:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021145.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021145hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 100.0 9.5E-34 3.2E-38 272.1 25.2 249 36-297 204-463 (511)
2 3l1l_A Arginine/agmatine antip 100.0 6.5E-32 2.2E-36 254.9 21.0 248 32-310 190-439 (445)
3 3gia_A Uncharacterized protein 100.0 2.3E-28 7.9E-33 230.6 17.3 182 33-234 188-369 (444)
4 3dh4_A Sodium/glucose cotransp 95.4 0.16 5.6E-06 48.2 12.6 32 124-155 317-348 (530)
5 2jln_A MHP1; hydantoin, transp 95.4 1.8 6.2E-05 40.6 21.7 30 129-158 298-329 (501)
6 2xq2_A Sodium/glucose cotransp 92.9 0.59 2E-05 45.0 10.5 99 44-155 261-377 (593)
7 2a65_A Leutaa, Na(+):neurotran 85.0 8.2 0.00028 36.3 11.5 118 32-155 241-367 (519)
8 2ks1_B Epidermal growth factor 69.2 3.6 0.00012 24.6 2.5 15 289-303 26-40 (44)
9 2l2t_A Receptor tyrosine-prote 52.6 5.7 0.00019 23.8 1.3 13 291-303 27-39 (44)
10 3j1z_P YIIP, cation efflux fam 52.4 32 0.0011 29.8 6.7 45 202-252 43-87 (306)
11 3rko_J NADH-quinone oxidoreduc 52.0 88 0.003 24.9 8.7 14 178-191 23-36 (184)
12 3h90_A Ferrous-iron efflux pum 37.4 97 0.0033 26.1 7.4 34 222-255 48-81 (283)
13 4ev6_A Magnesium transport pro 24.6 48 0.0016 29.0 3.2 13 248-260 281-293 (339)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=9.5e-34 Score=272.09 Aligned_cols=249 Identities=15% Similarity=0.115 Sum_probs=206.7
Q ss_pred HHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHHH
Q 021145 36 ILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQIL 115 (317)
Q Consensus 36 ~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 115 (317)
+.++...+|+|.|+|.+++++||+|||+|++||++..++.++.++|++.+++....+ +.++....+ + ..+.+
T Consensus 204 ~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~------~-~~~~~ 275 (511)
T 4djk_A 204 LVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVI-PGNEINLSA------G-VMQTF 275 (511)
T ss_dssp TTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTS-CTTSCCSSS------T-HHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHeec-CHhhccccc------h-HHHHH
Confidence 345677899999999999999999999999999999999999999999999999999 555553322 3 44556
Q ss_pred HHHhccccC--ChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHHHH
Q 021145 116 YDAFHGRYH--NSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICII 193 (317)
Q Consensus 116 ~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~~ 193 (317)
....+.. | .++...++.+..+++.+++.++++++.+|+++++||||.+| ++|+|+| |+++|+++++++.++..+
T Consensus 276 ~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP--~~~~~~~-~~~~P~~ai~~~~~~~~l 351 (511)
T 4djk_A 276 TVLMSHV-APEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLP--AAFAKMN-KNGVPVTLVISQLVITSI 351 (511)
T ss_dssp HHHHSSS-CSSCTTHHHHHHHHHHHHHHHHHHHHTTHHHHHTCHHHHGGGCS--SSCCCCC-SSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHh-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc--HHHHhcC-CCCCcHHHHHHHHHHHHH
Confidence 5655444 5 57788999999999999999999999999999999999999 9999999 679999999998544333
Q ss_pred HHhhhccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcCCCcccC--Cch-hHHHHHHHHHHHHHHHHh
Q 021145 194 LGLPILKV-----NVVFTAITSICTIGWVGGYAVPIFARMVMAEQK-FNAGPFYLG--KAS-RPICLIAFLWICYTCSVF 264 (317)
Q Consensus 194 ~~~~~~~~-----~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~--~~~-~~i~~~~~~~~~~~~~~~ 264 (317)
.. +..++ .+.++.+.++.++..++.|.+++.+.+++||++ +.+||||.| +++ +.+++++++++++.++..
T Consensus 352 ~~-~~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (511)
T 4djk_A 352 AL-IILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVS 430 (511)
T ss_dssp HH-HHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCSCCCSSTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HH-HHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCchHHHHHHHHHHHHHHHHHHee
Confidence 22 23444 677999999999999999999999888776654 567899998 344 568899999999999999
Q ss_pred hCCCCCCCCCCCccchHHHHHHHHHHHhhheee
Q 021145 265 LLPTFYPISWDTFNYAPVALGVGLGLIMLWWLL 297 (317)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 297 (317)
++|...+.+.+.+++.....++++++..++|+.
T Consensus 431 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 463 (511)
T 4djk_A 431 FLPPDNIQGDSTDMYVELLVVSFLVVLALPFIL 463 (511)
T ss_dssp TCCCSCSTTCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eeCCccccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999888877888888887777777777777665
No 2
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=6.5e-32 Score=254.92 Aligned_cols=248 Identities=17% Similarity=0.112 Sum_probs=199.7
Q ss_pred hHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchH
Q 021145 32 PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVP 111 (317)
Q Consensus 32 ~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 111 (317)
..+++.++...+|+|.|+|.+++++||+|||+||+||++..+..++.++|++.+++..... |++++.+.+. | +
T Consensus 190 ~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~~-----p-~ 262 (445)
T 3l1l_A 190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMI-PNAALRVSAS-----P-F 262 (445)
T ss_dssp ---HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CTTTSCSTTC-----T-H
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHhccCc-----H-H
Confidence 4468999999999999999999999999999999999999999999999999999999998 6676654443 7 8
Q ss_pred HHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHH
Q 021145 112 AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAIC 191 (317)
Q Consensus 112 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~ 191 (317)
.+.+++.. +++...++.++.+++.+++.++.+++.+|++++++|||.+| ++|+|+| |+++|+++++++.+++
T Consensus 263 ~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP--~~~~~~~-~~~~P~~a~~~~~~~~ 334 (445)
T 3l1l_A 263 GDAARMAL-----GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFP--PIFARVN-KAGTPVAGLIIVGILM 334 (445)
T ss_dssp HHHHHHHH-----CTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSC--GGGGCCC-TTCCCHHHHHHHHHHH
T ss_pred HHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--HHHHhcC-CCCCCHHHHHHHHHHH
Confidence 88888775 56688899999999999999999999999999999999999 9999999 6799999999999988
Q ss_pred HHHHhhhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCCCcccCCchhHHHHHHHHHHHHHHHHhhCCCC
Q 021145 192 IILGLPILKV--NVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTF 269 (317)
Q Consensus 192 ~~~~~~~~~~--~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 269 (317)
.++.++...+ .+.++.+.++.++..++.|.+++++.+++|||++++ |.| ..+.++.++.+.+++.....
T Consensus 335 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~---r~~-~~~~~~~~~~~~~~~~~~~~----- 405 (445)
T 3l1l_A 335 TIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGK---ARP-AYLAVTTIAFLYCIWAVVGS----- 405 (445)
T ss_dssp HHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSGG---GCT-TTHHHHHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc---ccc-hhHHHHHHHHHHHHHHHHHc-----
Confidence 8777644333 356889999999999999999999999887765422 444 66778888888777765432
Q ss_pred CCCCCCCccchHHHHHHHHHHHhhheeeeccceecCCcccc
Q 021145 270 YPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNI 310 (317)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 310 (317)
++ .......++.+++..+|..++||+++++..+.
T Consensus 406 ------~~-~~~~~~~~~~~~g~~~y~~~~~~~~~~~~~~~ 439 (445)
T 3l1l_A 406 ------GA-KEVMWSFVTLMVITAMYALNYNRLHKNPYPLD 439 (445)
T ss_dssp ------CH-HHHHHHHHHHHHHHHHHHHHHSTTCCCSSCCC
T ss_pred ------CH-HHHHHHHHHHHHHHHHHHHHhhhcccCccccc
Confidence 11 12344556666777777666666555444443
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.96 E-value=2.3e-28 Score=230.60 Aligned_cols=182 Identities=16% Similarity=0.202 Sum_probs=159.7
Q ss_pred HHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHH
Q 021145 33 YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPA 112 (317)
Q Consensus 33 ~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 112 (317)
.+++.++...+|+|.|+|.+++++||+|||+||+||++..+..++.++|++.+++..... |++++.+.+. .| +.
T Consensus 188 ~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~-~~~~l~~~~~----~~-~~ 261 (444)
T 3gia_A 188 SGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNL-PIDELIKASE----NA-LA 261 (444)
T ss_dssp HHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CHHHHHHTGG----GH-HH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHhcccc----hh-HH
Confidence 468899999999999999999999999999999999999999999999999999999988 7777755432 25 66
Q ss_pred HHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHHH
Q 021145 113 QILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICI 192 (317)
Q Consensus 113 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~ 192 (317)
+.+++.. +++...++.++.+++.+++.++.+++.+|++++++|||.+| ++|+|+| | ++|+++++++.+++.
T Consensus 262 ~~~~~~~-----g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP--~~f~~~~-~-~~P~~a~~~~~~~~~ 332 (444)
T 3gia_A 262 VAAKPFL-----GNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELP--EFFERKV-W-FKSTEGLYITSALGV 332 (444)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCC--SSCCTTS-C-CSCTHHHHHHHHHHH
T ss_pred HHHHHHh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--HHHhCCC-C-CCCcHHHHHHHHHHH
Confidence 7776665 46678899999999999999999999999999999999999 9999988 4 469999999999988
Q ss_pred HHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 021145 193 ILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK 234 (317)
Q Consensus 193 ~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~ 234 (317)
++.++. .++.+.++.+.+.++.|.+.+++.+++||++
T Consensus 333 ~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~ 369 (444)
T 3gia_A 333 LFALLF-----NMEGVASITSAVFMVIYLFVILSHYILIDEV 369 (444)
T ss_dssp HHHHHS-----CHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHc-----CHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 877632 3678899999999999999999988777765
No 4
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=95.43 E-value=0.16 Score=48.25 Aligned_cols=32 Identities=9% Similarity=-0.016 Sum_probs=26.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021145 124 HNSTGAIILLIVIWGSFFFGGLSVTTSAARVV 155 (317)
Q Consensus 124 g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 155 (317)
.+++...++..+++.+.+++..+.+.+.+-.+
T Consensus 317 lp~~l~Gl~~a~llAA~mST~ss~l~s~st~~ 348 (530)
T 3dh4_A 317 LPVGVKGVVFAALAAAIVSSLASMLNSTATIF 348 (530)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 46778888888999999999999998887765
No 5
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=95.39 E-value=1.8 Score=40.64 Aligned_cols=30 Identities=13% Similarity=0.079 Sum_probs=20.8
Q ss_pred HHHHH-HHHHHHHHHHHHH-HHHhhhhhhhhh
Q 021145 129 AIILL-IVIWGSFFFGGLS-VTTSAARVVYAL 158 (317)
Q Consensus 129 ~~~~~-~~~~~~~~~~~~~-~~~~~sR~l~~~ 158 (317)
..+.. +.++++.+++... ..++.+--+...
T Consensus 298 ~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~ 329 (501)
T 2jln_A 298 MAILFQVFVLLATWSTNPAANLLSPAYTLCST 329 (501)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 56666 7777888777764 677777666554
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=92.87 E-value=0.59 Score=45.00 Aligned_cols=99 Identities=11% Similarity=0.058 Sum_probs=56.5
Q ss_pred hhhccccc-cchhhhhccCcccchhhHHHHHHHHHHHHHHHHHH---HHHhhccCc--------------hhhhcCCCcc
Q 021145 44 YSLYGYDS-AAHLTEETKGADKTGPIAILSSIGIISIFGWALIL---ALCFSIQDF--------------SYLYDKSNET 105 (317)
Q Consensus 44 ~af~G~e~-~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~---~~~~~~~~~--------------~~~~~~~~~~ 105 (317)
..+.|.+. ..+-.=+.||+ |+..|+..++.....+..++... .......+. .++.+++.
T Consensus 261 ~~~~~~~q~~~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~-- 337 (593)
T 2xq2_A 261 LYYWGFNQYIIQRTLAAKSV-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADK-- 337 (593)
T ss_dssp HHHHTTTCSHHHHHHTTSCH-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGG--
T ss_pred HHhhcCChHHHHHhheeCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhh--
Confidence 34556553 35555677885 67888888887665544442221 111110010 01111111
Q ss_pred cCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021145 106 AGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVV 155 (317)
Q Consensus 106 ~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 155 (317)
. +.... +. .+++...++..+.+.+..++..+.+.+.+-.+
T Consensus 338 ---~-~p~l~-~~-----lp~~l~gl~~a~llaA~mST~~s~l~a~st~~ 377 (593)
T 2xq2_A 338 ---A-YPWLT-QF-----LPVGVKGVVFAALAAAIVSSLASMLNSTATIF 377 (593)
T ss_dssp ---H-HHHHH-HT-----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---H-HHHHH-HH-----cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 22333 33 46888888888999999999999888887664
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=84.99 E-value=8.2 Score=36.34 Aligned_cols=118 Identities=9% Similarity=0.042 Sum_probs=64.1
Q ss_pred hHHHHHHhHhhhhhh-ccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHh-----hcc-C-chhhhcCCC
Q 021145 32 PYAVILSFLVSQYSL-YGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCF-----SIQ-D-FSYLYDKSN 103 (317)
Q Consensus 32 ~~~~~~a~~~~~~af-~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~-----~~~-~-~~~~~~~~~ 103 (317)
......|...++|++ .|+-....++.=.|+ +.|++|.-......-...-++..++... ..+ + .+++.+..
T Consensus 241 ~~vw~~A~gQ~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a~g~~~~~~v~~~G- 318 (519)
T 2a65_A 241 PGVWIAAVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAG- 318 (519)
T ss_dssp HHHHHHHHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHhcCC-
Confidence 345678888889988 588888888887665 6788887666665554444433222211 110 1 12222222
Q ss_pred cccCCchH-HHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021145 104 ETAGAFVP-AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVV 155 (317)
Q Consensus 104 ~~~~~p~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 155 (317)
.|++ ...+..++.+..+++....++-+.+++..+++..+.+-.....+
T Consensus 319 ----~pgL~Fi~~P~af~~mp~g~~~~~lFF~~l~~agltS~i~~~E~~vt~l 367 (519)
T 2a65_A 319 ----AFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFL 367 (519)
T ss_dssp ----SSHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCceeHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhHhHHHH
Confidence 0112 22333444444345555556666666666666666555554444
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=69.22 E-value=3.6 Score=24.62 Aligned_cols=15 Identities=13% Similarity=0.009 Sum_probs=6.3
Q ss_pred HHHhhheeeecccee
Q 021145 289 GLIMLWWLLDARKWF 303 (317)
Q Consensus 289 ~~~~v~~~~~~~~~~ 303 (317)
++++.++++.|||+.
T Consensus 26 ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 26 VVALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhhhhHh
Confidence 334444444444433
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=52.59 E-value=5.7 Score=23.75 Aligned_cols=13 Identities=15% Similarity=0.025 Sum_probs=5.1
Q ss_pred Hhhheeeecccee
Q 021145 291 IMLWWLLDARKWF 303 (317)
Q Consensus 291 ~~v~~~~~~~~~~ 303 (317)
++.++++.|||+.
T Consensus 27 ~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 27 GLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHTTCS
T ss_pred HHHHHHHhhhhhh
Confidence 3333334444433
No 10
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=52.44 E-value=32 Score=29.75 Aligned_cols=45 Identities=11% Similarity=0.004 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCCCcccCCchhHHHHH
Q 021145 202 NVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLI 252 (317)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 252 (317)
.+.+..+.+..+. ++..++..+-+|+++++.||-..|...+.+.+
T Consensus 43 aDa~hsl~D~~s~------~i~l~~~~~s~k~~d~~~pyG~~R~E~l~al~ 87 (306)
T 3j1z_P 43 ASLTDSFADTLAS------IINFIAIRYAIVPADHDHRYGHGKAEPLAALA 87 (306)
T ss_dssp THHHHTTHHHHHH------HHHHHHHHHHTSCCCCTTSSCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHhCCCCcccCCCchhhHHHHHHHH
Confidence 3555555554433 23333444445555666677655544444333
No 11
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=51.95 E-value=88 Score=24.85 Aligned_cols=14 Identities=14% Similarity=0.069 Sum_probs=8.3
Q ss_pred CChHHHHHHHHHHH
Q 021145 178 KVPSNAVWLCAAIC 191 (317)
Q Consensus 178 ~~P~~a~~~~~~i~ 191 (317)
+.|+++.+.....-
T Consensus 23 ~n~v~s~l~Li~~f 36 (184)
T 3rko_J 23 TNPVHALLYLIISL 36 (184)
T ss_dssp CSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHH
Confidence 35888766555443
No 12
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=37.43 E-value=97 Score=26.12 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=17.1
Q ss_pred HHHHHHHHhhhccCcCCCcccCCchhHHHHHHHH
Q 021145 222 VPIFARMVMAEQKFNAGPFYLGKASRPICLIAFL 255 (317)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 255 (317)
+...+..+-+|+++++.||-..+...+.+.+..+
T Consensus 48 ~~l~~~~~s~~~~d~~~pyG~~r~E~l~~l~~~~ 81 (283)
T 3h90_A 48 TNLLVVRYSLQPADDNHSFGHGKAESLAALAQSM 81 (283)
T ss_dssp HHHHHHHHHTCCCCSSCSSCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHH
Confidence 3333444445555666777666554444443333
No 13
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=24.61 E-value=48 Score=29.00 Aligned_cols=13 Identities=0% Similarity=0.153 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 021145 248 PICLIAFLWICYT 260 (317)
Q Consensus 248 ~i~~~~~~~~~~~ 260 (317)
.+++++.++....
T Consensus 281 ~LTiit~IflP~T 293 (339)
T 4ev6_A 281 ILTMVTTIFAVPM 293 (339)
T ss_dssp HHHHHHHHSSHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444544443333
Done!