BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021147
(317 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FNP1|PEX1_ARATH Peroxisome biogenesis protein 1 OS=Arabidopsis thaliana GN=PEX1
PE=2 SV=2
Length = 1130
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 91 GGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK 131
GM S + +P +L+ GP GSGK+ L +K FE K
Sbjct: 581 AGMWFSKFKIPSPGHILIYGPPGSGKTILARAAAKYFEEQK 621
>sp|Q28W08|HSLU_JANSC ATP-dependent protease ATPase subunit HslU OS=Jannaschia sp.
(strain CCS1) GN=hslU PE=3 SV=1
Length = 438
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 13/136 (9%)
Query: 55 REVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGS 114
RE++ D+ I +DAK + W G L D PK ++L+IGP G
Sbjct: 7 REIVSELDRF---IIGQSDAKRAVAVALRNRWRRKQLGDDLRDEVYPK--NILMIGPTGV 61
Query: 115 GKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSS 174
GK+ + R++K+ + E + T VG E I V +++IR
Sbjct: 62 GKTEISRRLAKLAKAPFIKVEATKFTEVGYVGRDV----EQIIRDLVDAAQVMIR----E 113
Query: 175 SLRNRMRCKAHKIGCE 190
++R ++ KAH E
Sbjct: 114 NMREEVKAKAHDAAEE 129
>sp|A5ULP3|THIM_METS3 Hydroxyethylthiazole kinase OS=Methanobrevibacter smithii (strain
PS / ATCC 35061 / DSM 861) GN=thiM PE=3 SV=1
Length = 287
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 15/111 (13%)
Query: 56 EVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSG 115
EV+ D L IG L+ E V M +S K + +++ P G G
Sbjct: 59 EVVSIADALVINIGKLSH--------------EQVEAMKISSAQANKINTPVILDPVGVG 104
Query: 116 KSSLVNRIS-KVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGE 165
S L N+++ ++ EN K A+ R +T ++ T + E +GV E
Sbjct: 105 ISQLRNKVTLEIIENYKLAAIRGNITEIKTIAKLTGIISESNTAKGVDVSE 155
>sp|Q58476|Y1076_METJA Uncharacterized ATP-binding protein MJ1076 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1076 PE=3 SV=1
Length = 337
Score = 36.2 bits (82), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 106 LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGE 165
L + GPK SGKS+++ R+ K E NS++ Y L++Y P
Sbjct: 25 LFVYGPKSSGKSTVMMRVIKELE-------------NSNIVFFYYNLRKYATPTKDEFLS 71
Query: 166 LVIRRSDSSSLRNRMR--CKAHKIGCEPS 192
+ +SD L N++ K K G E +
Sbjct: 72 IFFEKSDKKYLLNKLEINLKIFKFGIEEN 100
>sp|A8FD80|CLPY_BACP2 ATP-dependent protease ATPase subunit ClpY OS=Bacillus pumilus
(strain SAFR-032) GN=clpY PE=3 SV=1
Length = 466
Score = 35.8 bits (81), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 55 REVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGS 114
RE+++ DQ IG L DAK + + ++ L D VPK ++L+IGP G
Sbjct: 9 REIVEKLDQYI--IGQL-DAKKAVAVALRNRYRRSLLHDKLKDEVVPK--NILMIGPTGV 63
Query: 115 GKSSLVNRISKV 126
GK+ + RI+K+
Sbjct: 64 GKTEIARRIAKI 75
>sp|Q8BV66|IFI44_MOUSE Interferon-induced protein 44 OS=Mus musculus GN=Ifi44 PE=2 SV=1
Length = 422
Score = 35.8 bits (81), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 94 TLSDY----DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128
L DY D+ + T +LL+GP G+GKSS VN + VF+
Sbjct: 168 ALRDYKPYGDLVQQTRVLLLGPIGAGKSSFVNSVKSVFK 206
>sp|B8E247|DXS_DICTD 1-deoxy-D-xylulose-5-phosphate synthase OS=Dictyoglomus turgidum
(strain Z-1310 / DSM 6724) GN=dxs PE=3 SV=1
Length = 618
Score = 35.4 bits (80), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 11/141 (7%)
Query: 10 FFTPEGEEIISPVDDFDIPLLSGDDEGSRD--SWDSLVDQRRRDAVFREVLQSYDQLRTR 67
F G + P D DIPLL +G +D S L+ + + + ++
Sbjct: 237 MFEYLGFKYFGPFDGHDIPLLISVFKGIKDNLSCPVLIHVTTKKGIGHKDAEATPSKFHS 296
Query: 68 IGSLTDAKNKILSYTP--GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125
IGS ++ + K+ +YT G + +GGM P+ ++ P+G+G S R +
Sbjct: 297 IGSKSEKEKKVPTYTEVFGKALVELGGM------YPEVVAITAAMPEGTGLSYFAQRFPE 350
Query: 126 VFENDKFASERAQVTYNSSVG 146
F + A + A VT+ + +
Sbjct: 351 RFFDVGIAEQHA-VTFAAGLA 370
>sp|Q5A4Q1|KAD12_CANAL Adenylate kinase 1-2 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=ADK1-2 PE=3 SV=1
Length = 249
Score = 35.4 bits (80), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSVG 146
DVPK+ ++LIGP GSGK + + + F A+ RAQV +++G
Sbjct: 29 DVPKSVRMVLIGPPGSGKGTQAPNLKEKFCACHLATGDMLRAQVAAKTALG 79
>sp|Q5WET8|PSTB1_BACSK Phosphate import ATP-binding protein PstB 1 OS=Bacillus clausii
(strain KSM-K16) GN=pstB1 PE=3 SV=1
Length = 260
Score = 34.7 bits (78), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 237 SFRDDKPVVVVTHGDLLSLTDRARIRT-----YLGELLGIPPAKQIFDIPESSDPEN 288
S RD +V+VTH ++ ARI Y+GEL+ I P ++IF PE E+
Sbjct: 201 SLRDSYTIVIVTH----NMQQAARISDETAFFYMGELVEIGPTQRIFSNPEHKRTED 253
>sp|Q2HFD4|MSH3_CHAGB DNA mismatch repair protein MSH3 OS=Chaetomium globosum (strain
ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL
1970) GN=MSH3 PE=3 SV=1
Length = 1156
Score = 34.7 bits (78), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 58/143 (40%), Gaps = 21/143 (14%)
Query: 1 MGGEKTTSRFFTPEGEEIISPVDDFDIPLLSGDDEGSRDSWDSLVD--QRRRDAVFR--- 55
+ G K SRF TPE +++ D L + D D S+ Q RDAV
Sbjct: 777 ISGTKKLSRFHTPEVMRLMNERDQHKEALAAACDNAFTDLLKSIASEYQPLRDAVASLAT 836
Query: 56 -EVLQSYDQLRTRIGS-----LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSL--- 106
+ L S Q+ + G L A +S T G + TL D +P TTSL
Sbjct: 837 LDCLLSLAQVASLPGYSKPTFLPTATPPTISITSGR--HPIAEHTLPDGYIPFTTSLASP 894
Query: 107 -----LLIGPKGSGKSSLVNRIS 124
L+ GP GKSS V ++
Sbjct: 895 SPLAQLITGPNMGGKSSYVRAVA 917
>sp|A3LV51|KAD1_PICST Adenylate kinase 1 OS=Scheffersomyces stipitis (strain ATCC 58785 /
CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=ADK1 PE=3 SV=1
Length = 249
Score = 34.7 bits (78), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSVG 146
DVPK+ ++LIGP G+GK + + + F A+ RAQV +++G
Sbjct: 29 DVPKSVRMVLIGPPGAGKGTQAPNLKEKFCACHLATGDMLRAQVAAKTALG 79
>sp|Q8TCB0|IFI44_HUMAN Interferon-induced protein 44 OS=Homo sapiens GN=IFI44 PE=2 SV=2
Length = 444
Score = 34.7 bits (78), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 106 LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGE 165
+LL+GP G+GKSS N + VF+ VT+ + VG T + E +R G+
Sbjct: 189 ILLLGPIGAGKSSFFNSVRSVFQ--------GHVTHQALVGTNTTGISEKYRTYSIRDGK 240
>sp|Q16BC5|PHNC1_ROSDO Phosphonates import ATP-binding protein PhnC 1 OS=Roseobacter
denitrificans (strain ATCC 33942 / OCh 114) GN=phnC1
PE=3 SV=1
Length = 263
Score = 34.7 bits (78), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128
D ++P+ L LIGP G+GKS+L+ ++++ E
Sbjct: 22 DLEIPQGQVLALIGPSGAGKSTLIRCVNRLVE 53
>sp|P27473|IFI44_PANTR Interferon-induced protein 44 OS=Pan troglodytes GN=IFI44 PE=1 SV=1
Length = 444
Score = 34.7 bits (78), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 106 LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGE 165
+LL+GP G+GKSS N + VF+ VT+ + VG T + E +R G+
Sbjct: 189 ILLLGPIGAGKSSFFNSVRSVFQ--------GHVTHQALVGTNTTGISEKYRTYSIRDGK 240
>sp|O67356|CLPX_AQUAE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Aquifex
aeolicus (strain VF5) GN=clpX PE=3 SV=1
Length = 412
Score = 34.7 bits (78), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 91 GGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFA-SERAQVTYNSSVGD 147
G++L D ++ K+ ++LLIGP GSGK+ L ++K+ N FA ++ +T VG+
Sbjct: 99 AGLSLDDVELEKS-NILLIGPTGSGKTLLARTLAKIL-NVPFAIADATSLTEAGYVGE 154
>sp|Q59W41|KAD11_CANAL Adenylate kinase 1-1 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=ADK1-1 PE=3 SV=1
Length = 249
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSVG 146
DVPK+ ++LIGP G+GK + + + F A+ RAQV +++G
Sbjct: 29 DVPKSVRMVLIGPPGAGKGTQAPNLKEKFCACHLATGDMLRAQVAAKTALG 79
>sp|Q0D9V6|STAR1_ORYSJ Protein STAR1 OS=Oryza sativa subsp. japonica GN=STAR1 PE=1 SV=1
Length = 346
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128
D DVP+ + +IGP GSGKS+L+ +++++E
Sbjct: 133 DLDVPRGVVVGVIGPSGSGKSTLLRALNRLWE 164
>sp|P35825|SLAP_GEOSE S-layer protein OS=Geobacillus stearothermophilus GN=sbsA PE=4 SV=1
Length = 1228
Score = 34.3 bits (77), Expect = 1.2, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 17/137 (12%)
Query: 11 FTPEGEEIISPVDDFDIPLLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTRIGS 70
FT EG+++ +P + GD D+ +L + DA + +Q ++L+T GS
Sbjct: 744 FTTEGQDVTAPTV---TKVFKGDSLKDADAVTTLTNV---DAGQKFTIQFSEELKTSSGS 797
Query: 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGK-SSLVNRISKVFEN 129
L K + T W++ G T+S PKT + +GK ++ V ++ + N
Sbjct: 798 LVGGKVTVEKLTNNGWVDAGTGTTVS--VAPKTDA--------NGKVTAAVVTLTGLDNN 847
Query: 130 DKFASERAQVTYNSSVG 146
DK A R V +S+ G
Sbjct: 848 DKDAKLRLVVDKSSTDG 864
>sp|Q7NNG3|PSTB2_GLOVI Phosphate import ATP-binding protein PstB 2 OS=Gloeobacter
violaceus (strain PCC 7421) GN=pstB2 PE=3 SV=1
Length = 268
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 56 EVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSG 115
E LQ+ DQ+ T+ G +N Y ++N+ D+P + +IGP G G
Sbjct: 4 EQLQA-DQVPTKAGIAYKVRNMAFFYGTKKALDNI------SVDLPAKSVTAIIGPSGCG 56
Query: 116 KSSLVNRISKVFEND 130
KS+ + ++++ E +
Sbjct: 57 KSTFIKALNRIAEAE 71
>sp|Q46Y89|MSBA_CUPPJ Lipid A export ATP-binding/permease protein MsbA OS=Cupriavidus
pinatubonensis (strain JMP134 / LMG 1197) GN=msbA PE=3
SV=1
Length = 590
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128
D VP + L+GP GSGK++LVN + + F+
Sbjct: 368 DIRVPAGEVVALVGPSGSGKTTLVNLVPRFFD 399
>sp|Q82B58|Y5847_STRAW Putative ABC transporter ATP-binding protein SAV_5847
OS=Streptomyces avermitilis (strain ATCC 31267 / DSM
46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680)
GN=SAV_5847 PE=3 SV=1
Length = 561
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 140
D+ VP+ +LL+GP G GKS+++ +S + + + R +VT
Sbjct: 23 DFTVPEGELVLLVGPSGVGKSTVLGAVSGLVPHFTGGTLRGRVT 66
>sp|Q55774|Y182_SYNY3 Uncharacterized ABC transporter ATP-binding protein sll0182
OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=sll0182 PE=3 SV=1
Length = 661
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 61 YDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 120
++ + TRIG+ +N LS P + V ++L+ V LL++GP GSGKSSL+
Sbjct: 442 HNVITTRIGATVALENVTLS-PPNSSRILVRDLSLA---VAPGNHLLIMGPSGSGKSSLL 497
Query: 121 NRISKVFENDKFASERAQVT 140
I+ ++++ + ER ++
Sbjct: 498 RAIAGLWDSGQGTIERPELA 517
>sp|O34784|YOBI_BACSU Uncharacterized membrane protein YobI OS=Bacillus subtilis (strain
168) GN=yobI PE=4 SV=1
Length = 1201
Score = 33.9 bits (76), Expect = 1.7, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGV 161
K ++ L GP GSGKSS++N K + + + T+N+ D L++ +
Sbjct: 57 KVKNIALTGPYGSGKSSILNTFQKQYSREYSFLNISLATFNTDTDDMENKLEKSILQ--- 113
Query: 162 RHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK 211
+++ R D + +R + H I + +I + F F++ G+ + K
Sbjct: 114 ---QMIYRVHDRTIPFSRFKRIKH-IRTKSIIINLIFFFAFIIVGIYLFK 159
>sp|Q6MH12|CLPX_BDEBA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Bdellovibrio
bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529
/ HD100) GN=clpX PE=3 SV=1
Length = 431
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 91 GGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFA 133
GG +D ++ K+ ++LLIGP GSGK+ L I+KV N FA
Sbjct: 101 GGKKSADVEMQKS-NILLIGPTGSGKTLLAQTIAKVL-NVPFA 141
>sp|O34703|YJOB_BACSU Uncharacterized ATPase YjoB OS=Bacillus subtilis (strain 168)
GN=yjoB PE=1 SV=1
Length = 423
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 98 YDVPKTTSLLLIGPKGSGKSSLVNRIS 124
YD+P +LL GP G+GK++LV I+
Sbjct: 215 YDIPYKRGILLYGPPGNGKTTLVKSIA 241
>sp|P54719|YFIC_BACSU Uncharacterized ABC transporter ATP-binding protein YfiC
OS=Bacillus subtilis (strain 168) GN=yfiC PE=3 SV=1
Length = 604
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE----------NDKFASERAQVTYNSSVG 146
+ VP S+ +GP G+GK+++ N +++ +E D RA + N
Sbjct: 386 QFTVPAGQSIAFVGPTGAGKTTVTNLLARFYEPNDGKILIDGTDIKTLTRASLRKNMGFV 445
Query: 147 DGTYFLQEYTIPRGVRHGEL 166
FL + TI +R+G L
Sbjct: 446 LQDSFLFQGTIRENIRYGRL 465
>sp|P10346|GLNQ_ECOLI Glutamine transport ATP-binding protein GlnQ OS=Escherichia coli
(strain K12) GN=glnQ PE=1 SV=1
Length = 240
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 19/132 (14%)
Query: 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE-- 128
+ + KN + P + N+ D ++ + +++IGP GSGKS+L+ I+K+ E
Sbjct: 1 MIEFKNVSKHFGPTQVLHNI------DLNIAQGEVVVIIGPSGSGKSTLLRCINKLEEIT 54
Query: 129 -----------NDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLR 177
ND ER V Y T V G L +R ++
Sbjct: 55 SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGANKEEAE 114
Query: 178 NRMRCKAHKIGC 189
R K+G
Sbjct: 115 KLARELLAKVGL 126
>sp|Q2RNA1|HSLU_RHORT ATP-dependent protease ATPase subunit HslU OS=Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255) GN=hslU PE=3 SV=1
Length = 435
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 55 REVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGS 114
RE++ D+ I DAK + W L D +PK ++L+IGP G
Sbjct: 7 REIVSELDR---HIVGQKDAKRAVAIALRNRWRRQQLSEALRDEVLPK--NILMIGPTGV 61
Query: 115 GKSSLVNRISKVFENDKFASERAQVTYNSSVG 146
GK+ + R++K+ + E + T VG
Sbjct: 62 GKTEIARRLAKLAQAPFLKVEATKFTEVGYVG 93
>sp|Q83P97|PHNC_SHIFL Phosphonates import ATP-binding protein PhnC OS=Shigella flexneri
GN=phnC PE=3 SV=2
Length = 262
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFA 133
D ++ + + L+GP GSGKS+L+ +S + DK A
Sbjct: 24 DLNIHHSEMVALLGPSGSGKSTLLRHLSGLITGDKSA 60
>sp|Q0SXV5|PHNC_SHIF8 Phosphonates import ATP-binding protein PhnC OS=Shigella flexneri
serotype 5b (strain 8401) GN=phnC PE=3 SV=1
Length = 262
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFA 133
D ++ + + L+GP GSGKS+L+ +S + DK A
Sbjct: 24 DLNIHHSEMVALLGPSGSGKSTLLRHLSGLITGDKSA 60
>sp|Q31TP8|PHNC_SHIBS Phosphonates import ATP-binding protein PhnC OS=Shigella boydii
serotype 4 (strain Sb227) GN=phnC PE=3 SV=1
Length = 262
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFA 133
D ++ + + L+GP GSGKS+L+ +S + DK A
Sbjct: 24 DLNIHHSEMVALLGPSGSGKSTLLRHLSGLITGDKSA 60
>sp|B4U6S1|CLPX_HYDS0 ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=clpX PE=3
SV=1
Length = 399
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 15/124 (12%)
Query: 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFA-SERAQVTYNSSVGDGTYFLQE 154
SD D+ K+ ++LLIGP GSGK+ L ++K+ N FA ++ +T VG+ E
Sbjct: 96 SDTDIEKS-NILLIGPTGSGKTLLAKTLAKIL-NVPFAIADATTLTEAGYVGEDV----E 149
Query: 155 YTIPRGVRHGELVIRRSDSSSLR-NRMRCKAHKIGCEPSVIRKVNFVIFVVDGL--AVLK 211
+ R +++ + I ++ + + + A K G PS+ R V+ +G+ A+LK
Sbjct: 150 NVLVRLLQNCDYNIEKAKKGIIYIDEIDKIAKKSGHNPSITRDVSG-----EGVQQALLK 204
Query: 212 SMEG 215
+EG
Sbjct: 205 IIEG 208
>sp|Q7XL03|CLPD2_ORYSJ Chaperone protein ClpD2, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPD2 PE=2 SV=2
Length = 937
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 61/138 (44%), Gaps = 21/138 (15%)
Query: 15 GEEIISPVDDF----DIPLLSGDDEGSRDS--WDSL-VDQRRRDAVFREVLQSYD-QLRT 66
GE+ SP D P L G +E +R + W + V Q D R++L D +LR
Sbjct: 564 GEDKTSPASMLSTSTDKPSLVGSEEIARVTSLWSGIPVQQLTADE--RKLLVGLDDELRK 621
Query: 67 RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 126
R+ DA +L+ + VG L+D D P T L+ GP G GK+ L +K
Sbjct: 622 RVIGQDDA---VLAISKAVKRSRVG---LNDPDRPIAT-LIFCGPTGVGKTEL----TKA 670
Query: 127 FENDKFASERAQVTYNSS 144
F SE A V + S
Sbjct: 671 LAASYFGSESATVRLDMS 688
>sp|A9KDS7|CLPX_COXBN ATP-dependent Clp protease ATP-binding subunit ClpX OS=Coxiella
burnetii (strain Dugway 5J108-111) GN=clpX PE=3 SV=1
Length = 422
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 76 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE 135
K+LS + +G T D +++LLIGP GSGK+ L ++K+ + ++
Sbjct: 81 KKVLSVAVYNHYKRLGNQTKKDSVEISKSNILLIGPTGSGKTLLAQTLAKILDVPFAIAD 140
Query: 136 RAQVTYNSSVGD 147
+T VG+
Sbjct: 141 ATTLTEAGYVGE 152
>sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp.
japonica GN=PDR4 PE=2 SV=1
Length = 1450
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 10/76 (13%)
Query: 107 LLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY-FLQEYTIPRGVRH-- 163
LL+GP GSGK++L+ ++ + D S +VTYN G G + F+ E T +H
Sbjct: 188 LLLGPPGSGKTTLLLALAGKLDKDLKVS--GKVTYN---GHGMHEFVPERTAAYISQHDL 242
Query: 164 --GELVIRRSDSSSLR 177
GE+ +R + + S R
Sbjct: 243 HIGEMTVRETLAFSAR 258
>sp|Q83DJ1|CLPX_COXBU ATP-dependent Clp protease ATP-binding subunit ClpX OS=Coxiella
burnetii (strain RSA 493 / Nine Mile phase I) GN=clpX
PE=3 SV=1
Length = 422
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 76 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE 135
K+LS + +G T D +++LLIGP GSGK+ L ++K+ + ++
Sbjct: 81 KKVLSVAVYNHYKRLGNQTKKDSVEISKSNILLIGPTGSGKTLLAQTLAKILDVPFAIAD 140
Query: 136 RAQVTYNSSVGD 147
+T VG+
Sbjct: 141 ATTLTEAGYVGE 152
>sp|B6J0V9|CLPX_COXB2 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Coxiella
burnetii (strain CbuG_Q212) GN=clpX PE=3 SV=1
Length = 422
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 76 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE 135
K+LS + +G T D +++LLIGP GSGK+ L ++K+ + ++
Sbjct: 81 KKVLSVAVYNHYKRLGNQTKKDSVEISKSNILLIGPTGSGKTLLAQTLAKILDVPFAIAD 140
Query: 136 RAQVTYNSSVGD 147
+T VG+
Sbjct: 141 ATTLTEAGYVGE 152
>sp|B6J8W3|CLPX_COXB1 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Coxiella
burnetii (strain CbuK_Q154) GN=clpX PE=3 SV=1
Length = 422
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 76 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE 135
K+LS + +G T D +++LLIGP GSGK+ L ++K+ + ++
Sbjct: 81 KKVLSVAVYNHYKRLGNQTKKDSVEISKSNILLIGPTGSGKTLLAQTLAKILDVPFAIAD 140
Query: 136 RAQVTYNSSVGD 147
+T VG+
Sbjct: 141 ATTLTEAGYVGE 152
>sp|Q46UT0|RBKTP_CUPPJ Bifunctional ribose 1,5-bisphosphokinase-thymidine phosphorylase
OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197)
GN=phnN PE=3 SV=2
Length = 602
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS-SVGDGTYFLQEYTIPRGVR 162
T L++GP G+GK SL++ ND++ R +T S S G+ + E R
Sbjct: 6 TFFLVVGPSGAGKDSLIDGARATLGNDEYVFARRIITRPSGSPGEDHESVAEAEFAERER 65
Query: 163 HGELVI 168
+GE ++
Sbjct: 66 NGEFLV 71
>sp|A9NDF9|CLPX_COXBR ATP-dependent Clp protease ATP-binding subunit ClpX OS=Coxiella
burnetii (strain RSA 331 / Henzerling II) GN=clpX PE=3
SV=1
Length = 422
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 76 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE 135
K+LS + +G T D +++LLIGP GSGK+ L ++K+ + ++
Sbjct: 81 KKVLSVAVYNHYKRLGNQTKKDSVEISKSNILLIGPTGSGKTLLAQTLAKILDVPFAIAD 140
Query: 136 RAQVTYNSSVGD 147
+T VG+
Sbjct: 141 ATTLTEAGYVGE 152
>sp|Q606K1|HSLU_METCA ATP-dependent protease ATPase subunit HslU OS=Methylococcus
capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath)
GN=hslU PE=3 SV=1
Length = 440
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 11/133 (8%)
Query: 55 REVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGS 114
RE++ D+ I +AK + W G L D PK ++L+IGP G
Sbjct: 7 REIVHELDK---HIVGQAEAKRAVAIALRNRWRRAQVGAPLRDEITPK--NILMIGPTGV 61
Query: 115 GKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGEL-VIRRSDS 173
GK+ + R++++ E + T VG +I R + + +IR++++
Sbjct: 62 GKTEIARRLARLANAPFIKVEATKFTEVGYVGRDV-----ESIIRDLTDAAIKMIRQTET 116
Query: 174 SSLRNRMRCKAHK 186
+ +++R A +
Sbjct: 117 AKVQSRAEAAAEE 129
>sp|Q5LLP0|HSLU_RUEPO ATP-dependent protease ATPase subunit HslU OS=Ruegeria pomeroyi
(strain ATCC 700808 / DSM 15171 / DSS-3) GN=hslU PE=3
SV=1
Length = 435
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 57/143 (39%), Gaps = 14/143 (9%)
Query: 55 REVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGS 114
RE++ D+ I DAK + W L D PK ++L+IGP G
Sbjct: 7 REIVSELDRF---IIGQKDAKRAVAVALRNRWRRKQLADDLRDEVYPK--NILMIGPTGV 61
Query: 115 GKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSS 174
GK+ + R++K+ E + T VG I R + +V R
Sbjct: 62 GKTEISRRLAKLARAPFIKVEATKFTEVGYVGRDV-----EQIIRDLADAAIVQTR---D 113
Query: 175 SLRNRMRCKAHKIGCEPSVIRKV 197
+R+ +R +AHK E VI +
Sbjct: 114 YMRDEVRARAHK-AAEDRVITAI 135
>sp|Q50863|RFBB_MYXXA O-antigen export system ATP-binding protein RfbB OS=Myxococcus
xanthus GN=rfbB PE=3 SV=1
Length = 437
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 47/82 (57%), Gaps = 11/82 (13%)
Query: 53 VFREVLQSYDQLRTRIGSLTDAKNKILSYTPG-------AWIENVGGMTLSDYDVPKTTS 105
+ ++V++S+ + RT G T K+++L + G + I + G+ L+ +PK +
Sbjct: 9 ILKDVVKSFRK-RTIRGEYTTFKSELLRWLRGKRQSRDASLITALRGINLT---IPKGKT 64
Query: 106 LLLIGPKGSGKSSLVNRISKVF 127
+ +IG GSGKS+L+ I+ ++
Sbjct: 65 VGIIGRNGSGKSTLLKLITGIY 86
>sp|Q6LPK6|MSBA_PHOPR Lipid A export ATP-binding/permease protein MsbA OS=Photobacterium
profundum GN=msbA PE=3 SV=1
Length = 585
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFEND 130
+D+P +L L+G GSGKS++ N +++ ++ D
Sbjct: 367 FDLPAGKTLALVGRSGSGKSTIANLLTRFYDID 399
>sp|Q86AD6|ORC4_DICDI Origin recognition complex subunit 4 OS=Dictyostelium discoideum
GN=orcD PE=3 SV=1
Length = 440
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 87/207 (42%), Gaps = 38/207 (18%)
Query: 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER--AQVTYNSSVGDGTYFLQEYT--- 156
K+T L+ GPKGSGKSS K + + R + +N + Y L+E
Sbjct: 56 KSTVGLITGPKGSGKSSFFKHCLKKYNESDYLLVRLSGMIHFNDN-----YALKEIAKAL 110
Query: 157 ---IPRGVR--HGELVIR-RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVL 210
IP G+ H IR + +L +++ KI + V+ +++ L ++
Sbjct: 111 GIKIPSGLNIFHTFEFIRVKLGKETLESQINTSTKKIQFQSLP------VVILIEELELM 164
Query: 211 KSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRT-YLGELL 269
+ S YN + + + LSF + + D++++ ++ RI++ + E +
Sbjct: 165 LTSLSTSKQSLFYNLLDLSHYKNVSLSF-----IATTSQHDIVNMFEK-RIKSRFTQESI 218
Query: 270 GIPPA---------KQIFDIPESSDPE 287
IPP K + +PES D E
Sbjct: 219 KIPPLSFDSIQIIFKNLISLPESFDDE 245
>sp|P55469|Y4GM_RHISN Uncharacterized ABC transporter ATP-binding protein y4gM
OS=Rhizobium sp. (strain NGR234) GN=NGR_a03510 PE=3 SV=1
Length = 586
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Query: 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFEND 130
+ KTT+L +GP G+GKSS++N I ++++ D
Sbjct: 369 FPAGKTTAL--VGPSGAGKSSIINLIMRLYDPD 399
>sp|Q59KF3|SPB1_CANAL AdoMet-dependent rRNA methyltransferase SPB1 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=SPB1 PE=3 SV=1
Length = 845
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 11/67 (16%)
Query: 98 YDVPKTTSLLLIGPK------GSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151
+ PK L+ PK G G S N +K+F +KF+S+R + Y GD T F
Sbjct: 202 FKAPKKLDPRLLDPKEVFEELGGGNESKQNNEAKIFNPEKFSSQRQRQGYQE--GDYTLF 259
Query: 152 LQEYTIP 158
+T+P
Sbjct: 260 ---HTMP 263
>sp|B0JL96|CLPX_MICAN ATP-dependent Clp protease ATP-binding subunit ClpX OS=Microcystis
aeruginosa (strain NIES-843) GN=clpX PE=3 SV=1
Length = 444
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 88 ENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147
+ GG + D + +++LLIGP GSGK+ L ++K+ + ++ +T VG+
Sbjct: 117 QKAGGGSPEDSIELQKSNILLIGPTGSGKTLLAQTLAKILDVPFAVADATTLTEAGYVGE 176
>sp|Q0VCP1|KAD4_BOVIN Adenylate kinase isoenzyme 4, mitochondrial OS=Bos taurus GN=AK4
PE=2 SV=1
Length = 223
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSVGDGTYFLQEYTIP 158
K +++GP GSGK ++ RI++ F +S R + N+ VGD + + I
Sbjct: 4 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKANTEVGD----MAKQYIE 59
Query: 159 RGVRHGELVIRRSDSSSLRNR 179
+G+ + VI R L NR
Sbjct: 60 KGLLVPDHVITRLMLLELENR 80
>sp|Q8DAV2|MSBA_VIBVU Lipid A export ATP-binding/permease protein MsbA OS=Vibrio
vulnificus (strain CMCP6) GN=msbA PE=3 SV=1
Length = 583
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 23/33 (69%)
Query: 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFEND 130
+D+P+ ++ L+G GSGKS++ N ++ ++ D
Sbjct: 364 FDIPRGKTVALVGRSGSGKSTIANLFTRFYDVD 396
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,292,815
Number of Sequences: 539616
Number of extensions: 4988466
Number of successful extensions: 25165
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 130
Number of HSP's that attempted gapping in prelim test: 25100
Number of HSP's gapped (non-prelim): 197
length of query: 317
length of database: 191,569,459
effective HSP length: 117
effective length of query: 200
effective length of database: 128,434,387
effective search space: 25686877400
effective search space used: 25686877400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)