Query 021147
Match_columns 317
No_of_seqs 315 out of 2747
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:57:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021147.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021147hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058 Peptide exporter, ABC 100.0 6.6E-49 1.4E-53 394.1 14.8 227 29-301 416-652 (716)
2 COG2274 SunT ABC-type bacterio 100.0 7.9E-47 1.7E-51 388.8 18.0 225 29-300 421-656 (709)
3 COG1126 GlnQ ABC-type polar am 100.0 6.7E-46 1.4E-50 327.2 15.2 197 70-317 1-206 (240)
4 COG4618 ArpD ABC-type protease 100.0 1.1E-45 2.5E-50 357.7 17.1 227 29-302 287-521 (580)
5 TIGR02868 CydC thiol reductant 100.0 3.3E-45 7.2E-50 368.7 16.9 221 30-299 283-516 (529)
6 COG1132 MdlB ABC-type multidru 100.0 5.4E-45 1.2E-49 370.2 18.2 239 30-317 281-533 (567)
7 KOG0055 Multidrug/pheromone ex 100.0 2.2E-44 4.8E-49 378.8 16.8 221 35-301 942-1174(1228)
8 PRK11174 cysteine/glutathione 100.0 2.8E-44 6E-49 366.2 16.6 237 30-316 300-552 (588)
9 KOG0055 Multidrug/pheromone ex 100.0 1.3E-44 2.9E-49 380.4 13.7 241 29-316 299-556 (1228)
10 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 5.9E-44 1.3E-48 370.0 16.6 239 29-317 403-654 (686)
11 COG1135 AbcC ABC-type metal io 100.0 1.2E-43 2.7E-48 327.0 15.5 203 71-317 1-212 (339)
12 COG1125 OpuBA ABC-type proline 100.0 1.8E-43 4E-48 318.0 13.8 192 71-312 1-194 (309)
13 TIGR01193 bacteriocin_ABC ABC- 100.0 2.6E-43 5.7E-48 366.3 16.8 240 29-317 423-678 (708)
14 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.4E-43 5.2E-48 366.7 16.2 240 29-317 421-681 (710)
15 PRK10790 putative multidrug tr 100.0 4.3E-43 9.3E-48 357.9 17.0 238 29-316 293-543 (592)
16 TIGR03375 type_I_sec_LssB type 100.0 5.4E-43 1.2E-47 363.3 17.0 240 29-317 413-669 (694)
17 PRK11176 lipid transporter ATP 100.0 1.3E-42 2.8E-47 353.5 18.0 240 30-317 294-548 (582)
18 KOG0056 Heavy metal exporter H 100.0 3.6E-43 7.8E-48 338.4 11.5 233 21-301 474-722 (790)
19 PRK11160 cysteine/glutathione 100.0 2.5E-42 5.5E-47 351.3 17.9 235 33-317 293-543 (574)
20 TIGR02857 CydD thiol reductant 100.0 1.9E-42 4E-47 348.8 16.7 239 30-317 273-526 (529)
21 COG1116 TauB ABC-type nitrate/ 100.0 2.4E-42 5.3E-47 311.5 14.9 191 70-317 2-201 (248)
22 PTZ00265 multidrug resistance 100.0 3.3E-42 7.1E-47 379.3 18.7 225 33-300 1115-1405(1466)
23 TIGR00958 3a01208 Conjugate Tr 100.0 2.3E-42 4.9E-47 359.5 15.9 218 29-294 429-658 (711)
24 KOG0057 Mitochondrial Fe/S clu 100.0 3.3E-42 7.2E-47 336.3 15.3 182 69-299 349-533 (591)
25 COG1120 FepC ABC-type cobalami 100.0 4E-42 8.7E-47 314.4 14.3 195 71-317 2-209 (258)
26 TIGR02203 MsbA_lipidA lipid A 100.0 1.3E-41 2.8E-46 345.1 17.1 240 29-316 282-536 (571)
27 PRK13657 cyclic beta-1,2-gluca 100.0 9E-42 1.9E-46 348.0 16.0 241 28-317 283-539 (588)
28 COG3638 ABC-type phosphate/pho 100.0 2.1E-41 4.5E-46 302.1 14.8 200 70-317 2-218 (258)
29 COG1136 SalX ABC-type antimicr 100.0 8.2E-41 1.8E-45 300.4 17.3 186 71-302 1-191 (226)
30 COG2884 FtsE Predicted ATPase 100.0 2E-41 4.3E-46 293.2 12.7 196 71-314 1-204 (223)
31 TIGR01846 type_I_sec_HlyB type 100.0 4.4E-41 9.5E-46 349.1 17.7 240 29-317 406-661 (694)
32 COG1124 DppF ABC-type dipeptid 100.0 3.9E-41 8.4E-46 301.8 14.7 201 70-317 2-212 (252)
33 COG1117 PstB ABC-type phosphat 100.0 3.9E-41 8.4E-46 296.2 13.2 203 69-316 5-217 (253)
34 COG4988 CydD ABC-type transpor 100.0 1.2E-40 2.5E-45 328.9 18.0 220 35-302 275-505 (559)
35 COG3839 MalK ABC-type sugar tr 100.0 5.8E-41 1.3E-45 317.4 14.8 180 69-302 1-182 (338)
36 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 6.7E-41 1.4E-45 305.2 14.7 195 69-317 2-209 (254)
37 TIGR02204 MsbA_rel ABC transpo 100.0 9.3E-41 2E-45 339.3 17.2 224 29-300 286-523 (576)
38 PRK10789 putative multidrug tr 100.0 2.1E-40 4.6E-45 336.9 17.9 224 29-300 265-498 (569)
39 TIGR01842 type_I_sec_PrtD type 100.0 2.4E-40 5.2E-45 334.8 16.9 240 29-317 269-523 (544)
40 TIGR01192 chvA glucan exporter 100.0 3.2E-40 7E-45 336.6 16.8 240 29-317 284-539 (585)
41 PLN03232 ABC transporter C fam 100.0 2.2E-40 4.8E-45 366.6 16.8 235 33-317 1185-1439(1495)
42 COG4987 CydC ABC-type transpor 100.0 1.9E-40 4E-45 323.7 14.2 216 39-301 298-522 (573)
43 COG3842 PotA ABC-type spermidi 100.0 2E-40 4.4E-45 315.2 13.8 181 69-303 3-186 (352)
44 PLN03130 ABC transporter C fam 100.0 3.7E-40 7.9E-45 365.9 16.8 235 33-317 1188-1442(1622)
45 COG1122 CbiO ABC-type cobalt t 100.0 1.2E-39 2.6E-44 296.4 14.2 198 70-317 2-209 (235)
46 COG1127 Ttg2A ABC-type transpo 100.0 1.4E-39 3.1E-44 291.0 14.1 201 69-317 6-216 (263)
47 TIGR02314 ABC_MetN D-methionin 100.0 3.9E-39 8.5E-44 308.5 16.7 199 71-317 1-211 (343)
48 TIGR00957 MRP_assoc_pro multi 100.0 2.4E-39 5.2E-44 358.9 17.3 222 30-300 1232-1468(1522)
49 TIGR00960 3a0501s02 Type II (G 100.0 6.2E-39 1.3E-43 287.6 16.5 196 71-317 1-208 (216)
50 PTZ00243 ABC transporter; Prov 100.0 3.4E-39 7.4E-44 357.6 16.9 223 30-300 1229-1493(1560)
51 COG1131 CcmA ABC-type multidru 100.0 1.6E-38 3.4E-43 298.6 16.2 196 70-317 3-207 (293)
52 PRK11650 ugpC glycerol-3-phosp 100.0 1.7E-38 3.7E-43 305.8 15.7 196 69-317 1-205 (356)
53 cd03261 ABC_Org_Solvent_Resist 100.0 2.1E-38 4.5E-43 287.9 15.4 194 72-317 1-207 (235)
54 TIGR02673 FtsE cell division A 100.0 3.5E-38 7.7E-43 282.2 15.9 196 71-317 1-207 (214)
55 PTZ00265 multidrug resistance 100.0 4.7E-38 1E-42 346.4 20.2 238 36-317 340-649 (1466)
56 PRK13537 nodulation ABC transp 100.0 3.6E-38 7.9E-43 297.9 15.9 195 70-317 6-208 (306)
57 cd03225 ABC_cobalt_CbiO_domain 100.0 4E-38 8.6E-43 281.3 14.6 195 73-317 1-204 (211)
58 PRK11432 fbpC ferric transport 100.0 4.9E-38 1.1E-42 302.0 15.9 195 69-317 4-207 (351)
59 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 5.7E-38 1.2E-42 281.6 15.0 198 72-317 1-210 (218)
60 PRK13647 cbiO cobalt transport 100.0 8.5E-38 1.8E-42 290.9 16.3 197 71-317 4-208 (274)
61 COG5265 ATM1 ABC-type transpor 100.0 2.2E-38 4.7E-43 301.5 12.4 224 29-300 211-446 (497)
62 COG1118 CysA ABC-type sulfate/ 100.0 2.2E-38 4.8E-43 291.7 12.1 196 71-317 2-208 (345)
63 PRK09536 btuD corrinoid ABC tr 100.0 6.5E-38 1.4E-42 305.5 16.0 196 70-317 2-209 (402)
64 cd03260 ABC_PstB_phosphate_tra 100.0 8.7E-38 1.9E-42 282.2 15.6 195 72-317 1-210 (227)
65 PRK10908 cell division protein 100.0 1.5E-37 3.2E-42 280.0 16.3 196 71-317 1-207 (222)
66 cd03259 ABC_Carb_Solutes_like 100.0 7.2E-38 1.6E-42 280.2 14.0 192 72-317 1-201 (213)
67 TIGR03265 PhnT2 putative 2-ami 100.0 9.9E-38 2.1E-42 300.2 15.9 195 69-317 2-205 (353)
68 TIGR02315 ABC_phnC phosphonate 100.0 1.6E-37 3.5E-42 283.1 16.4 196 71-317 1-216 (243)
69 cd03266 ABC_NatA_sodium_export 100.0 1.3E-37 2.9E-42 279.2 15.5 195 71-317 1-206 (218)
70 cd03292 ABC_FtsE_transporter F 100.0 1.7E-37 3.7E-42 277.5 16.2 195 72-317 1-206 (214)
71 cd03256 ABC_PhnC_transporter A 100.0 1.9E-37 4.2E-42 282.0 16.5 195 72-317 1-215 (241)
72 PRK13637 cbiO cobalt transport 100.0 1.9E-37 4.2E-42 290.4 16.9 199 71-317 2-215 (287)
73 PRK13652 cbiO cobalt transport 100.0 2.2E-37 4.8E-42 288.4 16.9 199 69-317 1-208 (277)
74 cd03226 ABC_cobalt_CbiO_domain 100.0 1E-37 2.2E-42 277.8 13.7 189 73-317 1-196 (205)
75 PRK11153 metN DL-methionine tr 100.0 1.5E-37 3.3E-42 298.0 15.9 199 71-317 1-211 (343)
76 PRK13536 nodulation factor exp 100.0 1.7E-37 3.8E-42 297.1 15.7 196 69-317 39-242 (340)
77 cd03263 ABC_subfamily_A The AB 100.0 2E-37 4.3E-42 278.4 15.1 194 72-317 1-202 (220)
78 cd03258 ABC_MetN_methionine_tr 100.0 3.5E-37 7.6E-42 279.3 16.4 199 71-317 1-211 (233)
79 cd03219 ABC_Mj1267_LivG_branch 100.0 1.6E-37 3.4E-42 281.9 14.0 195 72-317 1-213 (236)
80 PRK13634 cbiO cobalt transport 100.0 3.8E-37 8.1E-42 288.8 16.7 194 72-317 3-216 (290)
81 cd03262 ABC_HisP_GlnQ_permease 100.0 2.5E-37 5.3E-42 276.3 14.7 194 72-317 1-205 (213)
82 cd03268 ABC_BcrA_bacitracin_re 100.0 2.5E-37 5.3E-42 275.8 14.6 189 72-317 1-196 (208)
83 TIGR01288 nodI ATP-binding ABC 100.0 2.7E-37 5.8E-42 291.4 15.6 195 70-317 3-205 (303)
84 cd03265 ABC_DrrA DrrA is the A 100.0 2.9E-37 6.2E-42 277.8 15.0 193 72-317 1-202 (220)
85 PRK13636 cbiO cobalt transport 100.0 5.1E-37 1.1E-41 286.9 16.9 200 70-317 4-212 (283)
86 PRK11000 maltose/maltodextrin 100.0 2.6E-37 5.7E-42 298.9 15.4 194 70-317 2-204 (369)
87 PRK13643 cbiO cobalt transport 100.0 4.7E-37 1E-41 287.8 16.5 199 71-317 1-214 (288)
88 TIGR01271 CFTR_protein cystic 100.0 2.5E-37 5.5E-42 342.1 17.1 237 30-317 1151-1421(1490)
89 cd03224 ABC_TM1139_LivF_branch 100.0 2.9E-37 6.3E-42 277.5 14.4 193 72-317 1-202 (222)
90 TIGR02211 LolD_lipo_ex lipopro 100.0 6.7E-37 1.4E-41 275.2 16.7 199 71-317 1-211 (221)
91 PRK13650 cbiO cobalt transport 100.0 5.3E-37 1.1E-41 286.2 16.6 197 70-317 3-210 (279)
92 TIGR00972 3a0107s01c2 phosphat 100.0 4.6E-37 9.9E-42 281.2 15.6 196 71-317 1-213 (247)
93 PRK11264 putative amino-acid A 100.0 4.8E-37 1E-41 281.3 15.7 196 70-317 2-214 (250)
94 cd03235 ABC_Metallic_Cations A 100.0 2.1E-37 4.5E-42 277.2 13.0 189 73-317 1-202 (213)
95 cd03257 ABC_NikE_OppD_transpor 100.0 5.9E-37 1.3E-41 276.4 15.9 197 71-317 1-216 (228)
96 PRK10851 sulfate/thiosulfate t 100.0 3.6E-37 7.8E-42 296.3 15.4 193 71-317 2-207 (353)
97 cd03264 ABC_drug_resistance_li 100.0 3.7E-37 8E-42 275.2 14.4 192 72-317 1-199 (211)
98 cd03296 ABC_CysA_sulfate_impor 100.0 3.1E-37 6.8E-42 281.0 14.0 193 71-317 2-207 (239)
99 PRK11629 lolD lipoprotein tran 100.0 7.7E-37 1.7E-41 277.4 16.5 185 70-301 4-193 (233)
100 cd03295 ABC_OpuCA_Osmoprotecti 100.0 7E-37 1.5E-41 279.2 16.2 197 72-317 1-206 (242)
101 PRK09452 potA putrescine/sperm 100.0 4.6E-37 1E-41 297.5 15.8 196 68-317 11-215 (375)
102 PRK10522 multidrug transporter 100.0 9.2E-37 2E-41 308.9 18.7 214 30-300 275-496 (547)
103 PRK13638 cbiO cobalt transport 100.0 6.7E-37 1.4E-41 284.2 16.2 198 71-317 1-206 (271)
104 PRK13644 cbiO cobalt transport 100.0 6.2E-37 1.3E-41 285.1 15.9 196 71-317 1-205 (274)
105 PRK13631 cbiO cobalt transport 100.0 8.5E-37 1.8E-41 290.2 16.9 217 69-317 19-246 (320)
106 cd03218 ABC_YhbG The ABC trans 100.0 5.6E-37 1.2E-41 277.6 14.8 195 72-317 1-203 (232)
107 PRK11831 putative ABC transpor 100.0 5.9E-37 1.3E-41 284.3 15.2 200 69-317 5-214 (269)
108 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.2E-36 2.7E-41 308.5 18.9 213 29-297 279-514 (555)
109 PRK14250 phosphate ABC transpo 100.0 7.8E-37 1.7E-41 279.0 15.6 192 70-317 2-202 (241)
110 PRK15079 oligopeptide ABC tran 100.0 7.6E-37 1.6E-41 291.8 16.1 209 68-317 5-232 (331)
111 PRK13646 cbiO cobalt transport 100.0 1.1E-36 2.3E-41 285.2 16.7 194 72-317 3-216 (286)
112 cd03269 ABC_putative_ATPase Th 100.0 6.5E-37 1.4E-41 273.4 14.3 190 72-317 1-198 (210)
113 PRK10584 putative ABC transpor 100.0 1.3E-36 2.9E-41 274.7 16.3 200 70-317 5-216 (228)
114 PRK13635 cbiO cobalt transport 100.0 1.2E-36 2.7E-41 283.9 16.5 197 70-317 4-210 (279)
115 PRK13651 cobalt transporter AT 100.0 9.4E-37 2E-41 288.1 15.9 219 71-317 2-235 (305)
116 COG4555 NatA ABC-type Na+ tran 100.0 1.3E-37 2.9E-42 271.7 9.0 195 71-317 1-203 (245)
117 cd03301 ABC_MalK_N The N-termi 100.0 7E-37 1.5E-41 273.6 13.9 192 72-317 1-201 (213)
118 PRK11022 dppD dipeptide transp 100.0 8.8E-37 1.9E-41 290.8 15.4 212 69-317 1-224 (326)
119 PRK11607 potG putrescine trans 100.0 8.8E-37 1.9E-41 295.8 15.6 195 69-317 17-220 (377)
120 PRK14247 phosphate ABC transpo 100.0 1.2E-36 2.6E-41 278.8 15.6 204 69-317 1-215 (250)
121 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.1E-36 2.3E-41 274.0 15.0 190 72-317 1-202 (220)
122 PRK13641 cbiO cobalt transport 100.0 1.3E-36 2.8E-41 284.7 16.1 197 71-317 2-215 (287)
123 PRK10247 putative ABC transpor 100.0 2E-36 4.4E-41 273.6 16.8 194 69-317 5-207 (225)
124 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.5E-36 3.3E-41 276.0 16.1 193 71-317 1-202 (236)
125 PRK09493 glnQ glutamine ABC tr 100.0 1.2E-36 2.7E-41 277.1 15.4 195 71-317 1-206 (240)
126 PRK13639 cbiO cobalt transport 100.0 1.7E-36 3.8E-41 282.1 16.5 197 71-317 1-207 (275)
127 TIGR03522 GldA_ABC_ATP gliding 100.0 1.1E-36 2.4E-41 287.0 15.2 194 71-317 2-202 (301)
128 PRK13632 cbiO cobalt transport 100.0 1.5E-36 3.3E-41 281.9 15.8 198 69-317 5-212 (271)
129 TIGR03258 PhnT 2-aminoethylpho 100.0 1.2E-36 2.5E-41 293.5 15.4 194 70-317 4-209 (362)
130 PRK11231 fecE iron-dicitrate t 100.0 1.6E-36 3.5E-41 279.0 15.4 195 71-317 2-208 (255)
131 COG0410 LivF ABC-type branched 100.0 9.4E-37 2E-41 271.8 13.3 197 70-316 2-206 (237)
132 PRK13548 hmuV hemin importer A 100.0 2.4E-36 5.2E-41 278.6 16.3 195 71-317 2-211 (258)
133 TIGR03411 urea_trans_UrtD urea 100.0 2.3E-36 5E-41 275.5 15.9 197 70-317 1-212 (242)
134 PRK10895 lipopolysaccharide AB 100.0 1.6E-36 3.5E-41 276.5 14.7 196 70-317 2-207 (241)
135 PRK11248 tauB taurine transpor 100.0 2E-36 4.4E-41 278.9 15.3 190 71-317 1-199 (255)
136 PRK11614 livF leucine/isoleuci 100.0 1.7E-36 3.7E-41 275.7 14.5 196 69-317 3-207 (237)
137 TIGR02769 nickel_nikE nickel i 100.0 2.2E-36 4.8E-41 279.8 15.6 197 71-317 2-221 (265)
138 PRK10575 iron-hydroxamate tran 100.0 2.6E-36 5.5E-41 279.4 15.8 197 69-317 9-218 (265)
139 PRK11124 artP arginine transpo 100.0 3.1E-36 6.7E-41 274.8 15.9 201 71-317 2-211 (242)
140 PRK11308 dppF dipeptide transp 100.0 3.4E-36 7.3E-41 286.9 16.6 208 69-317 3-225 (327)
141 PRK14273 phosphate ABC transpo 100.0 2.6E-36 5.6E-41 277.3 15.1 203 69-317 5-219 (254)
142 PRK14257 phosphate ABC transpo 100.0 3.6E-36 7.7E-41 286.9 16.1 207 68-317 77-294 (329)
143 PRK14267 phosphate ABC transpo 100.0 3.8E-36 8.3E-41 275.9 15.4 204 69-317 2-218 (253)
144 PRK15112 antimicrobial peptide 100.0 4E-36 8.6E-41 278.5 15.6 199 69-317 2-220 (267)
145 COG3840 ThiQ ABC-type thiamine 100.0 1.5E-36 3.2E-41 261.5 11.7 176 71-302 1-178 (231)
146 PRK13648 cbiO cobalt transport 100.0 7.5E-36 1.6E-40 276.8 17.3 197 70-317 6-212 (269)
147 PRK13649 cbiO cobalt transport 100.0 5.6E-36 1.2E-40 279.1 16.5 195 72-317 3-215 (280)
148 COG1137 YhbG ABC-type (unclass 100.0 2.4E-37 5.2E-42 269.8 6.7 198 69-317 2-209 (243)
149 PRK15093 antimicrobial peptide 100.0 4.2E-36 9.1E-41 286.6 15.8 209 69-317 1-229 (330)
150 PRK13633 cobalt transporter AT 100.0 5.5E-36 1.2E-40 279.5 16.2 197 70-317 3-214 (280)
151 PRK13640 cbiO cobalt transport 100.0 6.4E-36 1.4E-40 279.3 16.5 197 70-317 4-213 (282)
152 PRK11247 ssuB aliphatic sulfon 100.0 5.5E-36 1.2E-40 276.5 15.9 187 69-317 10-204 (257)
153 PRK10619 histidine/lysine/argi 100.0 6E-36 1.3E-40 275.5 16.1 210 69-317 3-222 (257)
154 cd03231 ABC_CcmA_heme_exporter 100.0 6.4E-36 1.4E-40 265.9 15.7 187 72-316 1-194 (201)
155 cd03245 ABCC_bacteriocin_expor 100.0 3.8E-36 8.3E-41 270.1 14.4 198 71-317 2-208 (220)
156 PRK11300 livG leucine/isoleuci 100.0 4.8E-36 1E-40 275.4 15.3 197 70-317 4-224 (255)
157 PRK10253 iron-enterobactin tra 100.0 5.7E-36 1.2E-40 277.1 15.6 197 69-317 5-214 (265)
158 TIGR03608 L_ocin_972_ABC putat 100.0 4.2E-36 9.2E-41 267.0 13.9 195 74-317 1-203 (206)
159 PRK14242 phosphate transporter 100.0 6.6E-36 1.4E-40 274.3 15.6 202 70-317 5-218 (253)
160 TIGR03873 F420-0_ABC_ATP propo 100.0 6.8E-36 1.5E-40 275.0 15.7 194 72-317 2-207 (256)
161 PRK13645 cbiO cobalt transport 100.0 7.4E-36 1.6E-40 279.7 16.1 203 70-317 5-221 (289)
162 PRK14269 phosphate ABC transpo 100.0 7E-36 1.5E-40 273.4 15.5 199 71-317 2-211 (246)
163 PRK14259 phosphate ABC transpo 100.0 7.9E-36 1.7E-40 276.9 16.0 203 69-317 11-223 (269)
164 TIGR03410 urea_trans_UrtE urea 100.0 5.5E-36 1.2E-40 271.0 14.5 192 72-317 1-202 (230)
165 PRK14235 phosphate transporter 100.0 7.7E-36 1.7E-40 276.6 15.8 204 68-317 16-232 (267)
166 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.7E-36 5.8E-41 280.0 12.7 197 73-317 26-231 (269)
167 cd03289 ABCC_CFTR2 The CFTR su 100.0 7.4E-36 1.6E-40 278.2 15.5 196 71-317 2-206 (275)
168 TIGR01186 proV glycine betaine 100.0 3.2E-36 6.9E-41 290.3 13.5 183 93-317 9-200 (363)
169 cd03244 ABCC_MRP_domain2 Domai 100.0 6.9E-36 1.5E-40 268.6 14.8 181 71-300 2-186 (221)
170 PRK14268 phosphate ABC transpo 100.0 8.4E-36 1.8E-40 274.8 15.7 203 69-317 10-223 (258)
171 cd03298 ABC_ThiQ_thiamine_tran 100.0 7.9E-36 1.7E-40 266.6 14.9 190 72-317 1-199 (211)
172 TIGR03005 ectoine_ehuA ectoine 100.0 9.2E-36 2E-40 273.4 15.4 194 72-317 1-217 (252)
173 cd03252 ABCC_Hemolysin The ABC 100.0 4.1E-36 8.8E-41 273.0 12.9 196 72-316 1-205 (237)
174 PRK10070 glycine betaine trans 100.0 8.3E-36 1.8E-40 290.6 15.7 206 70-317 3-235 (400)
175 COG0411 LivG ABC-type branched 100.0 2.3E-36 4.9E-41 271.2 10.8 197 70-317 3-220 (250)
176 COG0444 DppD ABC-type dipeptid 100.0 6.2E-36 1.3E-40 278.4 14.1 211 71-317 1-224 (316)
177 PRK09984 phosphonate/organopho 100.0 1.2E-35 2.6E-40 274.2 16.0 199 70-317 3-223 (262)
178 TIGR01188 drrA daunorubicin re 100.0 6.8E-36 1.5E-40 281.7 14.5 178 93-317 9-194 (302)
179 cd03254 ABCC_Glucan_exporter_l 100.0 4.6E-36 1E-40 271.2 12.8 182 71-300 2-186 (229)
180 PRK09473 oppD oligopeptide tra 100.0 8.3E-36 1.8E-40 284.5 15.2 209 68-317 9-232 (330)
181 PRK13538 cytochrome c biogenes 100.0 1.2E-35 2.6E-40 264.6 15.1 176 71-301 1-177 (204)
182 TIGR02324 CP_lyasePhnL phospho 100.0 1.5E-35 3.2E-40 267.2 15.8 205 71-317 1-219 (224)
183 PRK13642 cbiO cobalt transport 100.0 1.2E-35 2.7E-40 276.7 15.8 196 71-317 4-210 (277)
184 COG1123 ATPase components of v 100.0 8.5E-36 1.8E-40 295.1 15.3 258 16-317 215-500 (539)
185 PRK13540 cytochrome c biogenes 100.0 2.1E-35 4.6E-40 262.2 16.3 174 71-301 1-175 (200)
186 PRK10744 pstB phosphate transp 100.0 1.2E-35 2.6E-40 274.1 15.0 204 68-317 10-225 (260)
187 cd03251 ABCC_MsbA MsbA is an e 100.0 1E-35 2.3E-40 269.7 14.3 197 72-317 1-206 (234)
188 TIGR01978 sufC FeS assembly AT 100.0 9.5E-36 2.1E-40 271.2 14.1 196 72-317 1-215 (243)
189 PRK13543 cytochrome c biogenes 100.0 2.3E-35 4.9E-40 264.8 16.2 192 69-317 9-207 (214)
190 PRK14240 phosphate transporter 100.0 1.6E-35 3.4E-40 271.4 15.2 203 69-317 1-215 (250)
191 PRK14274 phosphate ABC transpo 100.0 1.8E-35 4E-40 272.6 15.7 203 69-317 10-224 (259)
192 PRK14241 phosphate transporter 100.0 1.6E-35 3.4E-40 272.8 15.1 202 71-317 4-217 (258)
193 cd03253 ABCC_ATM1_transporter 100.0 1.1E-35 2.4E-40 269.9 13.8 196 72-316 1-204 (236)
194 PRK13547 hmuV hemin importer A 100.0 2.4E-35 5.3E-40 274.3 16.3 195 71-317 1-225 (272)
195 TIGR01277 thiQ thiamine ABC tr 100.0 2.4E-35 5.2E-40 264.2 15.1 190 72-317 1-199 (213)
196 PRK14245 phosphate ABC transpo 100.0 3.1E-35 6.7E-40 269.6 15.8 199 70-317 2-215 (250)
197 PRK10419 nikE nickel transport 100.0 2.8E-35 6.1E-40 273.0 15.7 199 69-317 1-222 (268)
198 PRK10771 thiQ thiamine transpo 100.0 2.8E-35 6E-40 267.1 15.2 191 71-317 1-200 (232)
199 TIGR01189 ccmA heme ABC export 100.0 2.9E-35 6.4E-40 260.8 15.0 174 72-301 1-175 (198)
200 PRK14271 phosphate ABC transpo 100.0 4.3E-35 9.2E-40 273.1 16.8 204 69-317 19-232 (276)
201 TIGR02982 heterocyst_DevA ABC 100.0 4.1E-35 8.8E-40 263.9 15.9 194 72-317 2-211 (220)
202 PRK13549 xylose transporter AT 100.0 1.9E-35 4.2E-40 296.6 15.3 200 69-317 3-213 (506)
203 cd03248 ABCC_TAP TAP, the Tran 100.0 2.5E-35 5.4E-40 266.0 14.5 198 68-317 8-218 (226)
204 PRK14253 phosphate ABC transpo 100.0 2.6E-35 5.7E-40 269.7 14.7 202 70-317 2-214 (249)
205 PRK14260 phosphate ABC transpo 100.0 3.8E-35 8.3E-40 270.6 15.6 203 69-317 5-219 (259)
206 PRK14254 phosphate ABC transpo 100.0 4.3E-35 9.2E-40 274.3 16.1 203 68-316 36-248 (285)
207 PRK14243 phosphate transporter 100.0 3.2E-35 6.8E-40 272.1 14.8 202 70-317 9-220 (264)
208 PRK14270 phosphate ABC transpo 100.0 4.5E-35 9.8E-40 268.7 15.6 203 69-317 2-216 (251)
209 PRK14237 phosphate transporter 100.0 5.5E-35 1.2E-39 270.9 16.3 203 69-317 18-232 (267)
210 TIGR01166 cbiO cobalt transpor 100.0 4.6E-35 1E-39 257.8 14.9 174 93-312 8-185 (190)
211 PLN03130 ABC transporter C fam 100.0 2.7E-35 5.8E-40 327.3 16.6 209 29-299 566-787 (1622)
212 PLN03232 ABC transporter C fam 100.0 3.2E-35 7E-40 325.6 17.1 210 29-299 566-787 (1495)
213 PRK10762 D-ribose transporter 100.0 2.5E-35 5.4E-40 295.5 14.6 197 70-317 3-211 (501)
214 PRK14248 phosphate ABC transpo 100.0 5.1E-35 1.1E-39 271.0 15.5 203 69-317 19-233 (268)
215 PRK14262 phosphate ABC transpo 100.0 4E-35 8.7E-40 268.7 14.5 202 70-317 2-215 (250)
216 PRK14239 phosphate transporter 100.0 5.1E-35 1.1E-39 268.2 15.2 199 70-317 4-217 (252)
217 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 3.6E-35 7.9E-40 266.9 13.9 197 72-317 1-207 (238)
218 PRK14261 phosphate ABC transpo 100.0 4.6E-35 9.9E-40 268.9 14.5 203 70-317 5-218 (253)
219 PRK13539 cytochrome c biogenes 100.0 5.9E-35 1.3E-39 260.8 14.9 173 71-301 2-175 (207)
220 COG1123 ATPase components of v 100.0 5.6E-35 1.2E-39 289.3 16.2 211 70-317 4-225 (539)
221 PRK14251 phosphate ABC transpo 100.0 5.1E-35 1.1E-39 268.1 14.7 202 70-317 3-216 (251)
222 PRK14265 phosphate ABC transpo 100.0 8E-35 1.7E-39 270.9 16.0 205 67-317 16-230 (274)
223 PRK11701 phnK phosphonate C-P 100.0 9E-35 2E-39 267.8 15.8 206 70-317 5-222 (258)
224 PRK09700 D-allose transporter 100.0 5.4E-35 1.2E-39 293.6 15.5 197 70-317 4-215 (510)
225 PRK15439 autoinducer 2 ABC tra 100.0 6.9E-35 1.5E-39 293.0 16.2 195 69-317 9-210 (510)
226 cd03288 ABCC_SUR2 The SUR doma 100.0 8.2E-35 1.8E-39 268.2 15.2 198 69-316 17-223 (257)
227 PRK14272 phosphate ABC transpo 100.0 6.4E-35 1.4E-39 267.5 14.3 202 71-317 4-217 (252)
228 PRK14256 phosphate ABC transpo 100.0 8.3E-35 1.8E-39 267.0 14.9 203 70-317 3-217 (252)
229 PRK14238 phosphate transporter 100.0 1E-34 2.3E-39 269.6 15.7 203 69-317 22-236 (271)
230 PRK11144 modC molybdate transp 100.0 7.3E-35 1.6E-39 280.3 15.0 187 71-317 1-199 (352)
231 PRK14236 phosphate transporter 100.0 1.2E-34 2.6E-39 269.3 15.8 203 69-317 23-237 (272)
232 PRK14255 phosphate ABC transpo 100.0 1E-34 2.2E-39 266.3 15.1 203 69-317 3-217 (252)
233 cd03297 ABC_ModC_molybdenum_tr 100.0 8.9E-35 1.9E-39 260.5 14.1 190 71-317 1-202 (214)
234 PRK15056 manganese/iron transp 100.0 7.4E-35 1.6E-39 270.7 14.1 194 71-317 6-212 (272)
235 PRK14258 phosphate ABC transpo 100.0 1.6E-34 3.6E-39 266.7 16.1 202 70-317 6-221 (261)
236 PRK14249 phosphate ABC transpo 100.0 1.2E-34 2.7E-39 265.7 14.9 202 70-317 3-216 (251)
237 COG4619 ABC-type uncharacteriz 100.0 1.7E-35 3.8E-40 252.0 8.4 177 72-301 4-181 (223)
238 TIGR02323 CP_lyasePhnK phospho 100.0 1.8E-34 3.9E-39 264.8 15.9 206 70-317 2-219 (253)
239 TIGR03740 galliderm_ABC gallid 100.0 9.9E-35 2.1E-39 261.8 13.8 187 72-317 1-194 (223)
240 cd03300 ABC_PotA_N PotA is an 100.0 1.7E-34 3.7E-39 262.0 15.1 192 72-317 1-201 (232)
241 cd03215 ABC_Carb_Monos_II This 100.0 8.6E-35 1.9E-39 254.8 12.6 162 70-317 3-174 (182)
242 cd03246 ABCC_Protease_Secretio 100.0 1.3E-34 2.9E-39 251.7 13.6 157 72-317 1-165 (173)
243 PRK11288 araG L-arabinose tran 100.0 1.4E-34 3E-39 290.1 15.6 196 70-317 3-210 (501)
244 cd03250 ABCC_MRP_domain1 Domai 100.0 1.4E-34 3.1E-39 257.3 13.9 182 72-316 1-196 (204)
245 TIGR03415 ABC_choXWV_ATP choli 100.0 1.5E-34 3.2E-39 280.1 15.2 187 93-317 40-235 (382)
246 cd03230 ABC_DR_subfamily_A Thi 100.0 1E-34 2.2E-39 252.4 12.5 158 72-317 1-165 (173)
247 TIGR02142 modC_ABC molybdenum 100.0 1.2E-34 2.6E-39 279.1 14.3 189 73-317 2-202 (354)
248 PRK10418 nikD nickel transport 100.0 1.6E-34 3.4E-39 265.8 14.4 194 71-317 4-211 (254)
249 PRK10938 putative molybdenum t 100.0 1.5E-34 3.3E-39 289.0 15.5 190 70-317 2-205 (490)
250 cd03229 ABC_Class3 This class 100.0 8.5E-35 1.8E-39 254.0 12.0 161 72-317 1-171 (178)
251 TIGR00968 3a0106s01 sulfate AB 100.0 1.9E-34 4.1E-39 262.6 14.6 192 72-317 1-201 (237)
252 COG4525 TauB ABC-type taurine 100.0 2E-34 4.2E-39 250.9 13.9 188 69-311 1-190 (259)
253 PRK10261 glutathione transport 100.0 2.1E-34 4.6E-39 295.7 16.6 207 69-317 311-534 (623)
254 cd03369 ABCC_NFT1 Domain 2 of 100.0 2.1E-34 4.5E-39 256.9 14.4 181 70-316 5-192 (207)
255 PRK14275 phosphate ABC transpo 100.0 2.3E-34 5E-39 269.4 15.2 204 68-317 36-251 (286)
256 PRK14244 phosphate ABC transpo 100.0 2.8E-34 6.1E-39 263.4 15.0 200 72-317 6-218 (251)
257 cd03299 ABC_ModC_like Archeal 100.0 3.3E-34 7E-39 260.8 15.1 191 72-317 1-200 (235)
258 COG4559 ABC-type hemin transpo 100.0 3.1E-34 6.8E-39 252.4 14.2 195 71-317 1-211 (259)
259 PRK14263 phosphate ABC transpo 100.0 3.8E-34 8.3E-39 264.6 14.9 203 70-317 7-218 (261)
260 cd03247 ABCC_cytochrome_bd The 100.0 1.9E-34 4.2E-39 251.6 12.2 143 72-300 1-145 (178)
261 PRK14246 phosphate ABC transpo 100.0 5E-34 1.1E-38 263.2 15.5 205 68-316 7-221 (257)
262 PRK15134 microcin C ABC transp 100.0 3E-34 6.6E-39 289.4 15.3 210 69-317 3-227 (529)
263 COG1129 MglA ABC-type sugar tr 100.0 3.1E-34 6.8E-39 282.2 14.9 198 69-317 6-215 (500)
264 cd03267 ABC_NatA_like Similar 100.0 2.5E-34 5.3E-39 261.9 13.1 179 92-317 36-224 (236)
265 CHL00131 ycf16 sulfate ABC tra 100.0 5.7E-34 1.2E-38 261.2 15.4 198 69-316 5-221 (252)
266 TIGR02633 xylG D-xylose ABC tr 100.0 3.8E-34 8.2E-39 286.8 15.4 199 71-317 1-211 (500)
267 cd03228 ABCC_MRP_Like The MRP 100.0 4.1E-34 8.8E-39 248.1 12.9 156 72-316 1-163 (171)
268 COG4604 CeuD ABC-type enteroch 100.0 2.5E-34 5.4E-39 250.5 11.4 195 71-317 1-206 (252)
269 PRK10261 glutathione transport 100.0 5.5E-34 1.2E-38 292.7 15.8 215 69-317 10-239 (623)
270 PRK14252 phosphate ABC transpo 100.0 1E-33 2.2E-38 261.9 15.8 206 69-317 14-230 (265)
271 COG4181 Predicted ABC-type tra 100.0 4.7E-34 1E-38 243.9 12.4 188 71-302 6-195 (228)
272 cd03234 ABCG_White The White s 100.0 6E-34 1.3E-38 257.3 13.9 196 71-317 3-214 (226)
273 PRK09544 znuC high-affinity zi 100.0 7.8E-34 1.7E-38 261.2 14.8 180 70-317 3-191 (251)
274 PRK14264 phosphate ABC transpo 100.0 1.1E-33 2.4E-38 267.1 15.8 202 69-316 43-268 (305)
275 cd03214 ABC_Iron-Siderophores_ 100.0 5.4E-34 1.2E-38 249.3 12.4 160 73-317 1-168 (180)
276 PRK03695 vitamin B12-transport 100.0 7.2E-34 1.6E-38 260.7 13.6 189 72-317 1-203 (248)
277 COG4152 ABC-type uncharacteriz 100.0 4.9E-34 1.1E-38 255.7 11.9 191 71-317 2-200 (300)
278 PRK14266 phosphate ABC transpo 100.0 1.5E-33 3.2E-38 258.3 15.5 201 70-316 2-214 (250)
279 PRK13541 cytochrome c biogenes 100.0 1.7E-33 3.7E-38 249.1 15.0 169 71-300 1-170 (195)
280 cd03290 ABCC_SUR1_N The SUR do 100.0 1.1E-33 2.5E-38 254.0 14.1 178 73-299 2-188 (218)
281 TIGR00957 MRP_assoc_pro multi 100.0 1.3E-33 2.8E-38 313.3 17.7 226 29-317 585-831 (1522)
282 PRK10982 galactose/methyl gala 100.0 7.1E-34 1.5E-38 284.3 13.7 192 74-317 1-204 (491)
283 PRK09700 D-allose transporter 100.0 9.1E-34 2E-38 284.7 14.4 195 70-317 264-479 (510)
284 COG3845 ABC-type uncharacteriz 100.0 1.2E-33 2.6E-38 274.1 14.6 196 70-317 3-210 (501)
285 PRK13549 xylose transporter AT 100.0 9.3E-34 2E-38 284.5 14.4 199 69-317 257-475 (506)
286 cd03233 ABC_PDR_domain1 The pl 100.0 1.1E-33 2.3E-38 252.1 12.9 161 71-302 3-167 (202)
287 PRK09580 sufC cysteine desulfu 100.0 2.9E-33 6.2E-38 255.8 15.8 197 71-316 1-215 (248)
288 TIGR03269 met_CoM_red_A2 methy 100.0 2.1E-33 4.5E-38 282.8 16.2 203 69-317 277-498 (520)
289 TIGR00954 3a01203 Peroxysomal 100.0 1.8E-33 3.9E-38 290.5 16.1 232 29-316 378-647 (659)
290 TIGR03269 met_CoM_red_A2 methy 100.0 1.4E-33 3.1E-38 284.0 14.7 219 72-317 1-239 (520)
291 cd03213 ABCG_EPDR ABCG transpo 100.0 1.9E-33 4.1E-38 248.9 13.4 165 71-317 3-182 (194)
292 PRK15134 microcin C ABC transp 100.0 1.6E-33 3.6E-38 284.1 14.6 201 69-317 273-496 (529)
293 COG4175 ProV ABC-type proline/ 100.0 2.3E-33 5E-38 259.3 14.2 200 70-311 3-222 (386)
294 COG4598 HisP ABC-type histidin 100.0 1E-33 2.2E-38 243.6 11.1 195 69-302 4-201 (256)
295 TIGR02770 nickel_nikD nickel i 100.0 2E-33 4.4E-38 254.6 12.8 180 93-317 2-196 (230)
296 TIGR01184 ntrCD nitrate transp 100.0 2.5E-33 5.5E-38 254.2 13.3 174 93-317 1-185 (230)
297 TIGR02633 xylG D-xylose ABC tr 100.0 2.3E-33 4.9E-38 281.2 13.6 199 70-317 256-473 (500)
298 cd03232 ABC_PDR_domain2 The pl 100.0 3.8E-33 8.2E-38 246.5 13.2 167 70-317 2-179 (192)
299 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 5E-33 1.1E-37 251.5 14.2 182 72-317 23-212 (224)
300 cd03223 ABCD_peroxisomal_ALDP 100.0 3.1E-33 6.6E-38 241.9 11.7 153 72-317 1-157 (166)
301 cd03217 ABC_FeS_Assembly ABC-t 100.0 4.5E-33 9.8E-38 247.5 11.9 165 72-317 1-175 (200)
302 COG4161 ArtP ABC-type arginine 100.0 9.3E-33 2E-37 234.2 13.2 184 71-300 2-188 (242)
303 cd03216 ABC_Carb_Monos_I This 100.0 5.7E-33 1.2E-37 239.5 11.4 144 72-317 1-152 (163)
304 PRK10938 putative molybdenum t 100.0 1.5E-32 3.2E-37 274.7 15.8 199 69-317 258-473 (490)
305 COG4608 AppF ABC-type oligopep 100.0 7.6E-33 1.6E-37 252.8 12.5 168 69-317 2-180 (268)
306 COG4172 ABC-type uncharacteriz 100.0 1E-32 2.2E-37 261.7 13.5 253 21-317 223-497 (534)
307 KOG0054 Multidrug resistance-a 100.0 1.2E-32 2.5E-37 295.8 15.0 214 40-301 1096-1323(1381)
308 cd03291 ABCC_CFTR1 The CFTR su 100.0 9.8E-32 2.1E-36 251.3 17.0 182 53-299 16-206 (282)
309 PRK10762 D-ribose transporter 100.0 2.5E-32 5.4E-37 273.9 13.8 192 70-317 256-465 (501)
310 PRK11819 putative ABC transpor 100.0 4.1E-32 9E-37 275.5 13.5 219 69-317 4-230 (556)
311 PRK15439 autoinducer 2 ABC tra 100.0 8.7E-32 1.9E-36 270.5 14.5 194 69-317 266-473 (510)
312 PRK11288 araG L-arabinose tran 100.0 8.6E-32 1.9E-36 269.9 14.3 193 70-317 256-466 (501)
313 cd03237 ABC_RNaseL_inhibitor_d 100.0 6.4E-32 1.4E-36 247.9 12.2 173 79-317 1-186 (246)
314 PRK10535 macrolide transporter 100.0 1.6E-31 3.4E-36 275.6 16.2 200 70-317 3-213 (648)
315 TIGR01271 CFTR_protein cystic 100.0 1.6E-31 3.6E-36 295.9 17.4 224 36-317 354-617 (1490)
316 TIGR01257 rim_protein retinal- 100.0 1.3E-31 2.9E-36 298.2 16.2 197 69-317 1935-2140(2272)
317 TIGR01257 rim_protein retinal- 100.0 1.6E-31 3.4E-36 297.7 15.8 196 70-317 927-1130(2272)
318 PRK15064 ABC transporter ATP-b 100.0 9.9E-32 2.1E-36 271.2 13.0 182 70-317 318-505 (530)
319 PRK10982 galactose/methyl gala 100.0 2.2E-31 4.9E-36 266.3 15.0 196 70-317 249-461 (491)
320 PRK15064 ABC transporter ATP-b 100.0 1.2E-31 2.5E-36 270.7 12.9 218 71-317 1-222 (530)
321 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.6E-31 3.5E-36 270.9 13.0 187 69-317 320-510 (552)
322 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.3E-31 5E-36 269.8 14.0 218 70-317 3-228 (552)
323 PRK11819 putative ABC transpor 100.0 2.1E-31 4.6E-36 270.3 13.2 187 69-317 322-512 (556)
324 TIGR03771 anch_rpt_ABC anchore 100.0 2.5E-31 5.4E-36 240.1 12.2 170 98-317 1-183 (223)
325 PRK13546 teichoic acids export 100.0 6.2E-31 1.3E-35 243.8 14.7 188 71-317 4-213 (264)
326 PRK13545 tagH teichoic acids e 100.0 6.8E-31 1.5E-35 261.1 15.3 185 69-317 19-213 (549)
327 PRK13409 putative ATPase RIL; 100.0 4.3E-31 9.3E-36 269.3 13.6 179 69-317 338-524 (590)
328 PLN03211 ABC transporter G-25; 100.0 3.3E-31 7.2E-36 273.2 12.4 177 74-301 71-254 (659)
329 cd03236 ABC_RNaseL_inhibitor_d 100.0 3.9E-31 8.6E-36 243.9 11.5 188 75-317 4-209 (255)
330 PRK11147 ABC transporter ATPas 100.0 6.8E-31 1.5E-35 270.4 13.2 186 70-317 318-507 (635)
331 COG1119 ModF ABC-type molybden 100.0 1.1E-30 2.5E-35 234.6 12.3 182 69-301 29-219 (257)
332 COG4167 SapF ABC-type antimicr 100.0 1.9E-30 4.1E-35 224.1 11.5 189 69-302 2-198 (267)
333 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.6E-30 3.5E-35 220.0 10.0 133 72-317 1-137 (144)
334 COG4172 ABC-type uncharacteriz 100.0 7.7E-30 1.7E-34 242.2 14.4 214 68-317 3-228 (534)
335 PRK10636 putative ABC transpor 100.0 5.5E-30 1.2E-34 263.7 14.2 182 69-317 310-497 (638)
336 COG4148 ModC ABC-type molybdat 100.0 1.1E-30 2.4E-35 238.0 6.8 164 94-304 15-179 (352)
337 PF00005 ABC_tran: ABC transpo 100.0 3.2E-30 6.9E-35 214.4 8.5 136 93-283 1-137 (137)
338 PRK10636 putative ABC transpor 100.0 9.9E-30 2.1E-34 261.8 13.7 199 71-317 1-216 (638)
339 cd03222 ABC_RNaseL_inhibitor T 100.0 5.5E-30 1.2E-34 224.1 9.4 131 75-317 4-142 (177)
340 COG4674 Uncharacterized ABC-ty 100.0 1.5E-29 3.2E-34 220.4 11.7 197 70-317 4-216 (249)
341 COG4133 CcmA ABC-type transpor 100.0 2.7E-29 5.7E-34 217.6 13.2 174 71-300 2-177 (209)
342 KOG0054 Multidrug resistance-a 100.0 1.6E-29 3.5E-34 271.7 14.2 208 30-297 469-687 (1381)
343 PRK11147 ABC transporter ATPas 100.0 2.2E-29 4.7E-34 259.3 14.0 213 69-317 1-223 (635)
344 TIGR00956 3a01205 Pleiotropic 100.0 2.6E-29 5.7E-34 276.7 15.5 183 71-301 759-950 (1394)
345 TIGR00955 3a01204 The Eye Pigm 100.0 2.3E-29 4.9E-34 258.4 13.6 169 93-301 41-214 (617)
346 COG4778 PhnL ABC-type phosphon 100.0 1.8E-29 3.9E-34 215.7 10.3 192 71-301 4-200 (235)
347 COG4136 ABC-type uncharacteriz 100.0 2.4E-29 5.3E-34 211.1 10.9 180 70-300 1-181 (213)
348 PRK15177 Vi polysaccharide exp 100.0 2.7E-29 5.8E-34 225.6 11.8 164 93-317 3-173 (213)
349 cd00267 ABC_ATPase ABC (ATP-bi 100.0 3.5E-29 7.6E-34 213.9 11.7 142 73-316 1-149 (157)
350 PTZ00243 ABC transporter; Prov 100.0 2.8E-29 6E-34 278.8 13.6 147 92-295 675-824 (1560)
351 PLN03073 ABC transporter F fam 100.0 4.2E-29 9.1E-34 259.4 14.1 181 70-317 507-694 (718)
352 COG4586 ABC-type uncharacteriz 100.0 5.6E-29 1.2E-33 226.3 11.4 201 70-317 2-227 (325)
353 TIGR01187 potA spermidine/putr 100.0 4E-29 8.7E-34 238.1 10.9 162 108-317 1-171 (325)
354 COG1101 PhnK ABC-type uncharac 100.0 8.1E-29 1.8E-33 218.6 11.6 187 71-302 1-197 (263)
355 PRK13409 putative ATPase RIL; 100.0 3.3E-29 7.2E-34 255.5 8.9 183 76-317 78-281 (590)
356 COG0396 sufC Cysteine desulfur 100.0 5.1E-28 1.1E-32 215.5 14.8 188 69-302 1-193 (251)
357 PLN03140 ABC transporter G fam 100.0 4.4E-28 9.5E-33 267.1 16.1 190 71-302 867-1068(1470)
358 KOG0061 Transporter, ABC super 99.9 1.7E-27 3.7E-32 243.7 15.2 195 70-307 24-223 (613)
359 PLN03073 ABC transporter F fam 99.9 5.8E-28 1.3E-32 250.9 11.6 213 70-317 176-411 (718)
360 COG0488 Uup ATPase components 99.9 1.8E-27 4E-32 238.5 13.5 212 69-316 1-219 (530)
361 COG1134 TagH ABC-type polysacc 99.9 3.7E-27 7.9E-32 212.1 12.9 170 90-317 40-217 (249)
362 COG0488 Uup ATPase components 99.9 7E-27 1.5E-31 234.4 11.9 184 69-317 319-506 (530)
363 COG4107 PhnK ABC-type phosphon 99.9 2.2E-26 4.8E-31 197.5 11.9 190 68-301 3-199 (258)
364 cd03238 ABC_UvrA The excision 99.9 1.3E-26 2.9E-31 202.5 9.3 139 92-316 10-157 (176)
365 TIGR00956 3a01205 Pleiotropic 99.9 1.2E-26 2.5E-31 255.9 10.0 173 92-302 76-258 (1394)
366 PLN03140 ABC transporter G fam 99.9 5.5E-26 1.2E-30 250.5 12.0 168 91-302 179-385 (1470)
367 COG4178 ABC-type uncharacteriz 99.9 4.4E-25 9.6E-30 221.5 15.4 201 37-299 342-561 (604)
368 COG4615 PvdE ABC-type sideroph 99.9 1.7E-24 3.7E-29 205.3 14.7 214 29-301 274-496 (546)
369 KOG0059 Lipid exporter ABCA1 a 99.9 8E-25 1.7E-29 232.4 13.1 196 70-316 563-767 (885)
370 cd03270 ABC_UvrA_I The excisio 99.9 2E-23 4.3E-28 189.2 11.2 83 224-317 117-208 (226)
371 cd03278 ABC_SMC_barmotin Barmo 99.9 7.1E-24 1.5E-28 188.4 4.2 159 93-317 12-185 (197)
372 COG4138 BtuD ABC-type cobalami 99.9 9.3E-23 2E-27 175.3 10.2 171 71-302 3-181 (248)
373 KOG0060 Long-chain acyl-CoA tr 99.9 1E-22 2.2E-27 200.7 11.6 180 69-299 431-616 (659)
374 cd03271 ABC_UvrA_II The excisi 99.9 6.6E-22 1.4E-26 182.9 12.1 203 93-316 11-240 (261)
375 KOG0927 Predicted transporter 99.9 1.6E-22 3.4E-27 198.1 7.9 186 68-316 386-575 (614)
376 cd03272 ABC_SMC3_euk Eukaryoti 99.9 1.8E-22 3.9E-27 184.0 6.5 188 72-301 4-210 (243)
377 COG4170 SapD ABC-type antimicr 99.9 1.4E-21 2.9E-26 172.6 9.0 212 69-317 1-229 (330)
378 KOG0065 Pleiotropic drug resis 99.8 3.3E-21 7.1E-26 204.5 12.4 166 93-301 807-978 (1391)
379 cd03273 ABC_SMC2_euk Eukaryoti 99.8 2.4E-22 5.2E-27 184.6 2.1 162 103-300 25-217 (251)
380 cd03279 ABC_sbcCD SbcCD and ot 99.8 1.7E-21 3.7E-26 174.8 5.3 177 71-316 5-202 (213)
381 COG1129 MglA ABC-type sugar tr 99.8 2.1E-20 4.5E-25 184.6 12.7 195 69-317 261-471 (500)
382 cd03274 ABC_SMC4_euk Eukaryoti 99.8 3.3E-21 7.1E-26 173.3 1.1 48 253-300 126-178 (212)
383 KOG0066 eIF2-interacting prote 99.8 6.3E-20 1.4E-24 176.2 8.3 165 70-299 585-750 (807)
384 COG1245 Predicted ATPase, RNas 99.8 1.5E-19 3.3E-24 174.3 9.3 177 71-317 342-526 (591)
385 KOG0064 Peroxisomal long-chain 99.8 7.9E-20 1.7E-24 178.7 6.5 175 72-299 482-658 (728)
386 KOG0927 Predicted transporter 99.8 4.5E-19 9.8E-24 174.0 11.2 191 70-299 74-267 (614)
387 COG3845 ABC-type uncharacteriz 99.8 3.1E-18 6.8E-23 166.9 15.8 202 68-317 254-473 (501)
388 cd03240 ABC_Rad50 The catalyti 99.8 1E-19 2.3E-24 162.5 4.9 139 96-301 16-170 (204)
389 KOG0062 ATPase component of AB 99.8 9.7E-19 2.1E-23 170.8 9.4 163 70-299 79-244 (582)
390 PRK00349 uvrA excinuclease ABC 99.8 4.8E-18 1E-22 180.3 13.1 100 201-316 792-901 (943)
391 KOG2355 Predicted ABC-type tra 99.8 3.6E-18 7.8E-23 150.5 10.0 198 69-315 11-209 (291)
392 PRK00635 excinuclease ABC subu 99.7 8.3E-18 1.8E-22 186.0 14.3 106 200-317 762-881 (1809)
393 KOG0062 ATPase component of AB 99.7 6.3E-18 1.4E-22 165.1 9.7 183 69-316 360-548 (582)
394 cd03275 ABC_SMC1_euk Eukaryoti 99.7 3.1E-18 6.8E-23 157.1 5.5 49 253-301 154-207 (247)
395 TIGR00630 uvra excinuclease AB 99.7 4.9E-17 1.1E-21 172.4 15.3 101 200-316 789-899 (924)
396 cd03276 ABC_SMC6_euk Eukaryoti 99.7 8.5E-18 1.8E-22 149.5 7.7 49 253-301 108-161 (198)
397 COG2401 ABC-type ATPase fused 99.7 2.1E-16 4.7E-21 151.3 8.6 159 91-306 397-560 (593)
398 COG1245 Predicted ATPase, RNas 99.6 5.3E-16 1.2E-20 150.0 7.0 187 76-314 79-280 (591)
399 cd03280 ABC_MutS2 MutS2 homolo 99.6 3.2E-15 7E-20 132.8 8.4 47 253-300 90-138 (200)
400 KOG0065 Pleiotropic drug resis 99.6 4.3E-15 9.4E-20 158.5 10.1 169 93-302 131-309 (1391)
401 cd00820 PEPCK_HprK Phosphoenol 99.5 9.1E-15 2E-19 117.4 3.4 75 92-210 4-78 (107)
402 cd03277 ABC_SMC5_euk Eukaryoti 99.5 3.7E-14 8.1E-19 127.6 7.0 49 253-301 125-178 (213)
403 cd03239 ABC_SMC_head The struc 99.5 4.6E-14 1E-18 123.6 7.0 49 253-301 93-146 (178)
404 KOG0066 eIF2-interacting prote 99.5 7.2E-14 1.6E-18 134.8 6.4 207 71-314 264-476 (807)
405 cd03283 ABC_MutS-like MutS-lik 99.4 2.9E-13 6.3E-18 120.6 8.2 34 93-128 17-50 (199)
406 cd03242 ABC_RecF RecF is a rec 99.4 4.1E-13 8.9E-18 124.8 9.3 49 251-299 180-238 (270)
407 PRK00635 excinuclease ABC subu 99.4 5.8E-13 1.2E-17 148.1 11.4 83 222-315 1677-1769(1809)
408 KOG0063 RNAse L inhibitor, ABC 99.4 4.5E-13 9.8E-18 129.0 7.8 65 253-317 455-527 (592)
409 cd03241 ABC_RecN RecN ATPase i 99.4 7.5E-13 1.6E-17 123.5 9.0 49 253-301 169-222 (276)
410 cd03227 ABC_Class2 ABC-type Cl 99.4 6.3E-13 1.4E-17 114.4 6.8 48 254-301 77-129 (162)
411 COG0178 UvrA Excinuclease ATPa 99.4 4.8E-12 1E-16 129.8 13.5 96 201-311 784-889 (935)
412 cd03243 ABC_MutS_homologs The 99.4 5.9E-13 1.3E-17 118.4 5.1 47 253-300 90-138 (202)
413 cd03285 ABC_MSH2_euk MutS2 hom 99.3 2.6E-12 5.6E-17 116.4 6.8 106 93-291 20-132 (222)
414 PTZ00132 GTP-binding nuclear p 99.3 8.7E-12 1.9E-16 111.5 7.2 44 258-301 156-205 (215)
415 cd03282 ABC_MSH4_euk MutS4 hom 99.3 8E-12 1.7E-16 111.8 6.8 36 93-128 19-54 (204)
416 TIGR03238 dnd_assoc_3 dnd syst 99.2 1E-11 2.3E-16 122.4 4.9 47 92-145 21-68 (504)
417 COG1126 GlnQ ABC-type polar am 99.1 6.9E-11 1.5E-15 105.4 5.1 129 146-294 77-238 (240)
418 PRK00064 recF recombination pr 99.1 4.4E-10 9.5E-15 108.9 10.8 48 251-298 270-327 (361)
419 TIGR01069 mutS2 MutS2 family p 99.1 4.5E-10 9.7E-15 118.2 10.2 47 253-300 384-432 (771)
420 cd01128 rho_factor Transcripti 99.1 1.3E-10 2.9E-15 106.9 4.7 50 238-291 115-173 (249)
421 TIGR02858 spore_III_AA stage I 99.1 5.9E-10 1.3E-14 103.8 8.9 37 104-145 112-148 (270)
422 cd03284 ABC_MutS1 MutS1 homolo 99.0 4.8E-10 1E-14 101.1 6.4 35 93-128 21-55 (216)
423 cd03281 ABC_MSH5_euk MutS5 hom 99.0 1.4E-09 3E-14 98.0 8.4 43 259-301 95-139 (213)
424 TIGR00611 recf recF protein. A 98.9 6.6E-09 1.4E-13 100.8 11.0 48 252-299 273-330 (365)
425 PRK06793 fliI flagellum-specif 98.9 6.2E-09 1.3E-13 102.6 10.2 64 71-145 130-193 (432)
426 PRK14079 recF recombination pr 98.9 1.4E-08 2.9E-13 98.1 11.2 47 252-298 261-317 (349)
427 TIGR00767 rho transcription te 98.9 4.4E-09 9.6E-14 102.3 7.7 77 47-128 103-193 (415)
428 smart00534 MUTSac ATPase domai 98.9 6E-10 1.3E-14 97.9 1.5 45 253-300 60-108 (185)
429 PF02463 SMC_N: RecF/RecN/SMC 98.9 1.5E-08 3.2E-13 90.9 10.1 47 254-300 136-187 (220)
430 PRK00349 uvrA excinuclease ABC 98.9 3.5E-09 7.6E-14 113.3 7.0 64 253-317 488-560 (943)
431 TIGR00630 uvra excinuclease AB 98.8 4.5E-09 9.7E-14 112.3 7.1 64 253-317 486-558 (924)
432 PRK06002 fliI flagellum-specif 98.8 8.2E-09 1.8E-13 101.9 8.0 65 69-144 137-201 (450)
433 KOG0063 RNAse L inhibitor, ABC 98.8 1.8E-09 3.9E-14 104.5 3.0 49 253-301 212-261 (592)
434 cd03287 ABC_MSH3_euk MutS3 hom 98.8 2.1E-08 4.6E-13 90.9 8.4 44 93-141 21-65 (222)
435 PRK08533 flagellar accessory p 98.7 4.2E-08 9E-13 89.4 9.4 39 99-142 20-59 (230)
436 PRK07721 fliI flagellum-specif 98.7 4.2E-08 9.2E-13 97.1 7.9 47 93-145 149-195 (438)
437 PRK07196 fliI flagellum-specif 98.6 2.3E-08 5.1E-13 98.6 4.3 35 93-128 146-180 (434)
438 cd01130 VirB11-like_ATPase Typ 98.6 2E-08 4.4E-13 88.2 3.4 47 93-144 15-61 (186)
439 PRK06995 flhF flagellar biosyn 98.6 8.8E-08 1.9E-12 95.7 8.1 36 93-128 246-281 (484)
440 COG3910 Predicted ATPase [Gene 98.6 2.9E-07 6.2E-12 80.8 8.5 49 253-302 128-177 (233)
441 PRK00409 recombination and DNA 98.5 1.6E-07 3.5E-12 99.3 7.7 47 253-300 389-437 (782)
442 PRK09825 idnK D-gluconate kina 98.5 2.9E-07 6.3E-12 80.4 7.4 35 102-145 2-36 (176)
443 COG0444 DppD ABC-type dipeptid 98.5 9.7E-08 2.1E-12 89.9 4.5 133 147-296 89-258 (316)
444 TIGR00606 rad50 rad50. This fa 98.5 1.1E-07 2.4E-12 105.8 5.6 89 200-300 1155-1252(1311)
445 cd02023 UMPK Uridine monophosp 98.5 2.4E-07 5.2E-12 81.8 6.3 24 105-128 1-24 (198)
446 COG1135 AbcC ABC-type metal io 98.5 1.7E-07 3.7E-12 87.8 5.3 132 145-296 82-246 (339)
447 COG1117 PstB ABC-type phosphat 98.5 3.9E-07 8.4E-12 81.5 6.7 130 145-292 87-248 (253)
448 COG1118 CysA ABC-type sulfate/ 98.4 1.4E-07 3E-12 88.3 4.0 130 136-283 62-231 (345)
449 PRK10078 ribose 1,5-bisphospho 98.4 2.1E-07 4.6E-12 81.6 4.9 26 103-128 2-27 (186)
450 COG3842 PotA ABC-type spermidi 98.4 2.2E-07 4.7E-12 89.3 5.2 121 145-283 76-230 (352)
451 PRK00300 gmk guanylate kinase; 98.4 3E-07 6.5E-12 81.4 5.2 28 101-128 3-30 (205)
452 PRK06315 type III secretion sy 98.4 4.3E-07 9.3E-12 89.9 6.1 47 93-144 155-201 (442)
453 PRK13695 putative NTPase; Prov 98.4 4.6E-07 1E-11 78.5 5.4 47 253-300 77-123 (174)
454 TIGR00235 udk uridine kinase. 98.4 3E-07 6.6E-12 82.0 4.0 28 101-128 4-31 (207)
455 cd03286 ABC_MSH6_euk MutS6 hom 98.4 6.1E-07 1.3E-11 81.2 5.7 36 93-128 20-55 (218)
456 PRK07594 type III secretion sy 98.3 4.7E-07 1E-11 89.4 4.6 63 71-144 129-191 (433)
457 PF13555 AAA_29: P-loop contai 98.3 7.2E-07 1.6E-11 64.7 4.3 36 93-128 12-48 (62)
458 PRK08149 ATP synthase SpaL; Va 98.3 6.4E-07 1.4E-11 88.3 5.2 47 93-145 142-191 (428)
459 cd01136 ATPase_flagellum-secre 98.3 9.5E-07 2.1E-11 84.4 6.1 46 93-144 60-105 (326)
460 PLN02796 D-glycerate 3-kinase 98.3 3.2E-07 6.9E-12 87.9 2.6 51 93-145 82-140 (347)
461 PRK09862 putative ATP-dependen 98.3 6.2E-07 1.3E-11 90.3 4.6 61 74-145 187-247 (506)
462 PRK01889 GTPase RsgA; Reviewed 98.2 7.4E-07 1.6E-11 86.3 3.5 47 93-144 185-231 (356)
463 PRK09099 type III secretion sy 98.2 1.6E-06 3.6E-11 85.8 5.2 46 93-144 154-199 (441)
464 PRK07960 fliI flagellum-specif 98.2 1.8E-06 3.8E-11 85.6 5.2 47 93-145 166-215 (455)
465 smart00382 AAA ATPases associa 98.2 9.8E-06 2.1E-10 64.9 8.8 27 102-128 1-27 (148)
466 cd01124 KaiC KaiC is a circadi 98.2 4.9E-06 1.1E-10 72.2 7.3 49 253-301 70-128 (187)
467 cd01120 RecA-like_NTPases RecA 98.2 5.7E-06 1.2E-10 69.1 7.5 34 105-143 1-34 (165)
468 TIGR03497 FliI_clade2 flagella 98.2 2.2E-06 4.8E-11 84.4 5.5 47 93-145 128-174 (413)
469 COG3839 MalK ABC-type sugar tr 98.2 1.5E-06 3.3E-11 83.1 4.2 121 145-283 74-227 (338)
470 TIGR02788 VirB11 P-type DNA tr 98.2 1.3E-06 2.8E-11 82.9 3.5 43 96-143 137-179 (308)
471 PRK09270 nucleoside triphospha 98.2 1.5E-06 3.3E-11 78.8 3.7 32 103-139 33-64 (229)
472 PRK06067 flagellar accessory p 98.1 6.5E-06 1.4E-10 74.7 7.8 26 99-124 21-46 (234)
473 PRK15494 era GTPase Era; Provi 98.1 1.8E-06 3.9E-11 83.0 4.0 55 68-127 15-76 (339)
474 TIGR03498 FliI_clade3 flagella 98.1 2.1E-06 4.5E-11 84.7 4.4 46 95-145 132-177 (418)
475 TIGR02322 phosphon_PhnN phosph 98.1 4.5E-06 9.7E-11 72.4 5.9 26 103-128 1-26 (179)
476 TIGR02546 III_secr_ATP type II 98.1 2.4E-06 5.1E-11 84.5 4.7 46 93-144 136-181 (422)
477 TIGR01026 fliI_yscN ATPase Fli 98.1 2.2E-06 4.7E-11 85.1 4.3 46 93-144 154-199 (440)
478 COG1125 OpuBA ABC-type proline 98.1 2.6E-06 5.7E-11 78.1 4.4 118 145-283 74-222 (309)
479 TIGR03496 FliI_clade1 flagella 98.1 3.2E-06 6.9E-11 83.3 5.0 62 72-144 112-173 (411)
480 TIGR02903 spore_lon_C ATP-depe 98.1 2.2E-05 4.7E-10 81.3 10.7 27 102-128 174-200 (615)
481 PRK05922 type III secretion sy 98.1 4.9E-06 1.1E-10 82.2 5.5 47 93-145 148-194 (434)
482 PRK08472 fliI flagellum-specif 98.1 3.9E-06 8.5E-11 83.0 4.7 47 93-145 148-194 (434)
483 cd01125 repA Hexameric Replica 98.0 2.2E-05 4.8E-10 71.5 9.0 32 270-302 109-147 (239)
484 PRK14723 flhF flagellar biosyn 98.0 2.7E-05 5.8E-10 81.7 10.4 44 93-141 175-220 (767)
485 cd02025 PanK Pantothenate kina 98.0 3.7E-06 8.1E-11 76.1 3.4 24 105-128 1-24 (220)
486 COG1124 DppF ABC-type dipeptid 98.0 1E-05 2.2E-10 73.6 6.2 130 146-294 82-244 (252)
487 PRK05688 fliI flagellum-specif 98.0 4.4E-06 9.6E-11 82.8 4.2 35 93-128 159-193 (451)
488 cd02026 PRK Phosphoribulokinas 98.0 9.7E-06 2.1E-10 75.8 6.2 32 105-141 1-32 (273)
489 PF13476 AAA_23: AAA domain; P 98.0 4.5E-06 9.8E-11 72.5 3.7 35 93-128 10-44 (202)
490 cd01876 YihA_EngB The YihA (En 98.0 7E-06 1.5E-10 68.5 4.7 23 106-128 2-26 (170)
491 PHA02562 46 endonuclease subun 98.0 2.6E-06 5.6E-11 86.7 2.2 48 252-299 466-525 (562)
492 TIGR00554 panK_bact pantothena 98.0 4.9E-06 1.1E-10 78.4 3.8 39 104-145 63-101 (290)
493 TIGR03263 guanyl_kin guanylate 98.0 4.8E-06 1E-10 72.1 3.4 26 103-128 1-26 (180)
494 TIGR00634 recN DNA repair prot 98.0 4.3E-06 9.3E-11 85.7 3.2 48 253-300 439-491 (563)
495 PRK10869 recombination and rep 98.0 4.5E-06 9.8E-11 85.3 3.0 48 253-300 429-481 (553)
496 cd00879 Sar1 Sar1 subfamily. 97.9 5.7E-06 1.2E-10 71.9 3.2 51 93-144 10-63 (190)
497 PRK08972 fliI flagellum-specif 97.9 7.2E-06 1.6E-10 81.0 4.2 35 93-128 153-187 (444)
498 PRK10416 signal recognition pa 97.9 8E-06 1.7E-10 77.9 4.0 40 101-145 112-151 (318)
499 PRK13830 conjugal transfer pro 97.9 7.8E-05 1.7E-09 79.7 11.9 35 268-302 648-684 (818)
500 PRK03846 adenylylsulfate kinas 97.9 1.2E-05 2.6E-10 71.3 4.6 41 101-145 22-62 (198)
No 1
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.6e-49 Score=394.14 Aligned_cols=227 Identities=16% Similarity=0.214 Sum_probs=204.7
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHccccccccC-------CCCceEEEeEEEEcCCCCccccccCceeeeeEec
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVP 101 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~ 101 (317)
.+..........|..+.+..-+..|++|+++.+|.++.. ..+.|+|+||+|.|+.+... .+|+|+||+|+
T Consensus 416 ~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~VsFaYP~Rp~~---~Vlk~lsfti~ 492 (716)
T KOG0058|consen 416 QLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDVSFAYPTRPDV---PVLKNLSFTIR 492 (716)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCccccccccceEEEEEeeeecCCCCCc---hhhcCceeeeC
Confidence 456677788889999999999999999999998887553 34679999999999876431 12999999999
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHH
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMR 181 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~ 181 (317)
|||++|||||||+||||++++|.++|+ |++|+|.+||.+ +++++...+|++
T Consensus 493 pGe~vALVGPSGsGKSTiasLL~rfY~-----PtsG~IllDG~~----------------------i~~~~~~~lr~~-- 543 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLLLRFYD-----PTSGRILLDGVP----------------------ISDINHKYLRRK-- 543 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC-----CCCCeEEECCee----------------------hhhcCHHHHHHH--
Confidence 999999999999999999999999999 999999999998 889999999988
Q ss_pred HhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHH
Q 021147 182 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRA 259 (317)
Q Consensus 182 ~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~ 259 (317)
||+|.|+|.+|.. ||+|||.++... ..++.+..+|+.+++| +..+|+||+|.+|||| .+|||||
T Consensus 544 -----Ig~V~QEPvLFs~--sI~eNI~YG~~~-----~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG--~qLSGGQ 609 (716)
T KOG0058|consen 544 -----IGLVGQEPVLFSG--SIRENIAYGLDN-----ATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKG--SQLSGGQ 609 (716)
T ss_pred -----eeeeeccceeecc--cHHHHHhcCCCC-----CCHHHHHHHHHHhChHHHHHhCccccccccCCcc--ccccchH
Confidence 9999999999976 999999998763 3445589999999996 7779999999999999 9999999
Q ss_pred HHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 260 RIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 260 ~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
||||||||||+++|.+|||||+|| ||.++|..+++++.++.+
T Consensus 610 KQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~ 652 (716)
T KOG0058|consen 610 KQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ 652 (716)
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc
Confidence 999999999999999999999999 999999999999988754
No 2
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=7.9e-47 Score=388.77 Aligned_cols=225 Identities=17% Similarity=0.194 Sum_probs=203.9
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHccccccccC--------CCCceEEEeEEEEcCCCCccccccCceeeeeEe
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDV 100 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I 100 (317)
.+.+|+.+..+.|..+++.+.+..|+.++++.+++.... ..+.|+++||+|+|+...+.+ |+|+||+|
T Consensus 421 ~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~~~~v----L~~isL~I 496 (709)
T COG2274 421 YFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPV----LEDLSLEI 496 (709)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCCCcch----hhceeEEe
Confidence 577899999999999999999999999999988774331 235699999999997664432 99999999
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHH
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRM 180 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~ 180 (317)
++||++||||+||||||||+|+|.|+|. |++|+|++||.+ +.+.+...+|++
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~-----p~~G~I~~dg~d----------------------l~~i~~~~lR~~- 548 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYK-----PQQGRILLDGVD----------------------LNDIDLASLRRQ- 548 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEe----------------------HHhcCHHHHHhh-
Confidence 9999999999999999999999999999 999999999988 788999999998
Q ss_pred HHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHH
Q 021147 181 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDR 258 (317)
Q Consensus 181 ~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG 258 (317)
||||+|++.+|.+ |++||++++++.... +++.++|+.++++ +..+|.||.+.++|+| ..||||
T Consensus 549 ------ig~V~Q~~~Lf~g--SI~eNi~l~~p~~~~-----e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G--~~LSGG 613 (709)
T COG2274 549 ------VGYVLQDPFLFSG--SIRENIALGNPEATD-----EEIIEAAQLAGAHEFIENLPMGYDTPVGEGG--ANLSGG 613 (709)
T ss_pred ------eeEEcccchhhcC--cHHHHHhcCCCCCCH-----HHHHHHHHHhCcHHHHHhcccccccccccCC--CCCCHH
Confidence 9999999998876 999999988765443 3499999999996 6678999999999999 899999
Q ss_pred HHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 259 ARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 259 ~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
||||++||||+.++|+++||||||| ||+.+|+.+.+.+.++.
T Consensus 614 QrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~ 656 (709)
T COG2274 614 QRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL 656 (709)
T ss_pred HHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh
Confidence 9999999999999999999999999 99999999999999986
No 3
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.7e-46 Score=327.19 Aligned_cols=197 Identities=19% Similarity=0.253 Sum_probs=167.1
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||+++|++.+ + |++|||+|++||+++|+||||||||||+|||++|.. |++|+|+++|.+.
T Consensus 1 ~mi~i~~l~K~fg~~~-V-----Lkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~-----~~~G~I~i~g~~~--- 66 (240)
T COG1126 1 MMIEIKNLSKSFGDKE-V-----LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE-----PDSGSITVDGEDV--- 66 (240)
T ss_pred CeEEEEeeeEEeCCeE-E-----ecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC-----CCCceEEECCEec---
Confidence 4799999999998664 3 999999999999999999999999999999999999 9999999999751
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC--CCChHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME--GDSDVEKQYNQIV 227 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~--~~~~~~~~~~~~~ 227 (317)
....+...+|++ +|+|||...||+ .+||.+|+.++.... ....+..++..++
T Consensus 67 ------------------~~~~~~~~~R~~-------vGmVFQ~fnLFP-HlTvleNv~lap~~v~~~~k~eA~~~A~~l 120 (240)
T COG1126 67 ------------------GDKKDILKLRRK-------VGMVFQQFNLFP-HLTVLENVTLAPVKVKKLSKAEAREKALEL 120 (240)
T ss_pred ------------------cchhhHHHHHHh-------cCeecccccccc-cchHHHHHHhhhHHHcCCCHHHHHHHHHHH
Confidence 111245556666 999999999886 799999998765332 2334566778888
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+|+.. ..+.|| .+|||||+||+||||||+.+|++++|||||| |||+....+.+.++++.+.
T Consensus 121 L~~VGL~~--ka~~yP---------~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTM 189 (240)
T COG1126 121 LEKVGLAD--KADAYP---------AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTM 189 (240)
T ss_pred HHHcCchh--hhhhCc---------cccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeE
Confidence 99999842 334788 5999999999999999999999999999999 9999999999999998754
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|...++.+++|||
T Consensus 190 ivVTHEM~FAr~Vadrv 206 (240)
T COG1126 190 IIVTHEMGFAREVADRV 206 (240)
T ss_pred EEEechhHHHHHhhheE
Confidence 567788899999986
No 4
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.1e-45 Score=357.73 Aligned_cols=227 Identities=17% Similarity=0.187 Sum_probs=203.8
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc-----CCCCceEEEeEEEEcCCCCccccccCceeeeeEecCC
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT-----RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKT 103 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~G 103 (317)
..-+|++.+...|.++..++.+|+|+.++|+..|.... .+.+.+.++++++.-++.+.++ |++|||++.+|
T Consensus 287 RaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~LP~P~g~L~Ve~l~~~PPg~~~pi----l~~isF~l~~G 362 (580)
T COG4618 287 RALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAERMPLPAPQGALSVERLTAAPPGQKKPI----LKGISFALQAG 362 (580)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCCCCCCceeeEeeeeecCCCCCCcc----eecceeEecCC
Confidence 45579999999999999999999999999987665433 3566899999999877665443 99999999999
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHh
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCK 183 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~ 183 (317)
|.+|||||||||||||.|+|.|.++ |++|.|++||.+ +++|+++++-++
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG~w~-----p~~G~VRLDga~----------------------l~qWd~e~lG~h---- 411 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVGIWP-----PTSGSVRLDGAD----------------------LRQWDREQLGRH---- 411 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHcccc-----cCCCcEEecchh----------------------hhcCCHHHhccc----
Confidence 9999999999999999999999999 999999999988 889999999998
Q ss_pred hhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHH
Q 021147 184 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARI 261 (317)
Q Consensus 184 ~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~q 261 (317)
|||+||+..+|++ ||+|||+-... +.+.+++.++++.++.| +..+|+||+|.|++.| ..|||||||
T Consensus 412 ---iGYLPQdVeLF~G--TIaeNIaRf~~-----~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G--~~LSgGQRQ 479 (580)
T COG4618 412 ---IGYLPQDVELFDG--TIAENIARFGE-----EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGG--ATLSGGQRQ 479 (580)
T ss_pred ---cCcCcccceecCC--cHHHHHHhccc-----cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCC--CCCCchHHH
Confidence 9999999999987 99999985432 23445699999999997 6679999999999999 899999999
Q ss_pred hhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 262 RTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 262 Rl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
||++|||++.+|.+++||||.+ ||...|+.+.++|..+++.
T Consensus 480 RIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~r 521 (580)
T COG4618 480 RIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKAR 521 (580)
T ss_pred HHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHc
Confidence 9999999999999999999999 9999999999999987643
No 5
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=3.3e-45 Score=368.69 Aligned_cols=221 Identities=17% Similarity=0.161 Sum_probs=191.8
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc----------CCCCceEEEeEEEEcCCCCccccccCceeeeeE
Q 021147 30 LSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT----------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYD 99 (317)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~ 99 (317)
+..+.......|..+.+++.+.+|+.++++.+++... ...+.|+++||+|+|++.+.+ |+|+||+
T Consensus 283 ~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~v-----L~~isl~ 357 (529)
T TIGR02868 283 AFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGSPPV-----LDGVSLD 357 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCCCce-----eecceEE
Confidence 4456667777888999999999999999976543211 112359999999999765444 9999999
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHH
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNR 179 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~ 179 (317)
|++||.+|||||||||||||+|+|+|+++ |++|+|++||.+ ++++ .+++|++
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~i~g~~----------------------i~~~-~~~lr~~ 409 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLLD-----PLQGEVTLDGVS----------------------VSSL-QDELRRR 409 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEE----------------------hhhH-HHHHHhh
Confidence 99999999999999999999999999999 999999999987 6777 8888887
Q ss_pred HHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcH
Q 021147 180 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTD 257 (317)
Q Consensus 180 ~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSg 257 (317)
|+||||++.+|+. ||+|||.++.+.. .++++.++++.++++ +..+|+|+++.++++| ..|||
T Consensus 410 -------i~~V~Q~~~lF~~--TI~eNI~~g~~~~-----~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G--~~LSG 473 (529)
T TIGR02868 410 -------ISVFAQDAHLFDT--TVRDNLRLGRPDA-----TDEELWAALERVGLADWLRSLPDGLDTVLGEGG--ARLSG 473 (529)
T ss_pred -------eEEEccCcccccc--cHHHHHhccCCCC-----CHHHHHHHHHHcCCHHHHHhCcccccchhcccc--CcCCH
Confidence 9999999999976 9999999875432 234588999999994 5568999999999999 89999
Q ss_pred HHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 258 RARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 258 G~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
|||||++||||++++|+++||||||| ||+++++.+.+.++++
T Consensus 474 GQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~ 516 (529)
T TIGR02868 474 GERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAA 516 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999 9999999999999875
No 6
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=5.4e-45 Score=370.23 Aligned_cols=239 Identities=19% Similarity=0.215 Sum_probs=206.6
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHHHHHHHccccccccC------CCCceEEEeEEEEcCCCCccccccCceeeeeEecCC
Q 021147 30 LSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKT 103 (317)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~G 103 (317)
+..+.......+..+..+..+.+|++++++.++..... ..+.|+++||+|.|++++.+ |+|+||+|++|
T Consensus 281 ~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~I~f~~vsf~y~~~~~v-----l~~is~~i~~G 355 (567)
T COG1132 281 LLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFSYPGKKPV-----LKDISFSIEPG 355 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCeEEEEEEEEEcCCCCcc-----ccCceEEEcCC
Confidence 34466777788899999999999999999986654332 22459999999999864445 99999999999
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHh
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCK 183 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~ 183 (317)
|.+|||||||||||||+++|+|+|+ |++|+|++||.+ +++++...+|++
T Consensus 356 e~vaiVG~sGsGKSTl~~LL~r~~~-----~~~G~I~idg~d----------------------I~~i~~~~lr~~---- 404 (567)
T COG1132 356 EKVAIVGPSGSGKSTLIKLLLRLYD-----PTSGEILIDGID----------------------IRDISLDSLRKR---- 404 (567)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC-----CCCCeEEECCEe----------------------hhhcCHHHHHHh----
Confidence 9999999999999999999999999 999999999987 888999999998
Q ss_pred hhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHH
Q 021147 184 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARI 261 (317)
Q Consensus 184 ~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~q 261 (317)
|++|||++.+|+. ||++|+.++++...+ +++.++++.++++ +..+|+|+++.++++| ..|||||||
T Consensus 405 ---I~~V~Qd~~LF~~--TI~~NI~~g~~~at~-----eei~~a~k~a~~~d~I~~lp~g~dt~vge~G--~~LSgGQrQ 472 (567)
T COG1132 405 ---IGIVSQDPLLFSG--TIRENIALGRPDATD-----EEIEEALKLANAHEFIANLPDGYDTIVGERG--VNLSGGQRQ 472 (567)
T ss_pred ---ccEEcccceeecc--cHHHHHhcCCCCCCH-----HHHHHHHHHhChHHHHHhCcccccceecCCC--ccCCHHHHH
Confidence 9999999999985 999999998765433 4589999999885 5567999999999999 899999999
Q ss_pred hhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 262 RTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 262 Rl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
|++||||++++|+++||||||| ||+.++..+++.+.++.+. -.|+++-+.+ +|||
T Consensus 473 rlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~I 533 (567)
T COG1132 473 RLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRI 533 (567)
T ss_pred HHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEE
Confidence 9999999999999999999999 9999999999999976533 3466666655 6653
No 7
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.2e-44 Score=378.79 Aligned_cols=221 Identities=16% Similarity=0.207 Sum_probs=195.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHccccccccC---------CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCE
Q 021147 35 EGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTS 105 (317)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~ 105 (317)
..+......+.+++.+..+++++++.+|.+... ..+.|+++||+|.||....+ .+|+|+||+|++|++
T Consensus 942 ~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~---~Il~~l~l~i~~GqT 1018 (1228)
T KOG0055|consen 942 GQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDV---PVLNNLSLSIRAGQT 1018 (1228)
T ss_pred HHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCc---hhhcCCcEEecCCCE
Confidence 345556667788999999999999988754331 24569999999999865322 239999999999999
Q ss_pred EEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhh
Q 021147 106 LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAH 185 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 185 (317)
+||||||||||||.+.+|-++|+ |++|.|.+||++ +++++.+.+|++
T Consensus 1019 vALVG~SGsGKSTvI~LLeRfYd-----p~~G~V~IDg~d----------------------ik~lnl~~LR~~------ 1065 (1228)
T KOG0055|consen 1019 VALVGPSGSGKSTVISLLERFYD-----PDAGKVKIDGVD----------------------IKDLNLKWLRKQ------ 1065 (1228)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC-----CCCCeEEECCcc----------------------cccCCHHHHHHh------
Confidence 99999999999999999999999 999999999998 889999999998
Q ss_pred hccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhh
Q 021147 186 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRT 263 (317)
Q Consensus 186 ~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl 263 (317)
+|+|.|+|.||+. |++|||+++.. . ..++++.++|+.+++| +..+|+||+|.+|+.| .+|||||||||
T Consensus 1066 -i~lVsQEP~LF~~--TIrENI~YG~~----~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG--~QLSGGQKQRI 1135 (1228)
T KOG0055|consen 1066 -IGLVSQEPVLFNG--TIRENIAYGSE----E-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERG--VQLSGGQKQRI 1135 (1228)
T ss_pred -cceeccCchhhcc--cHHHHHhccCC----C-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCccc--CcCCchHHHHH
Confidence 9999999999986 99999999822 1 3455699999999997 7789999999999999 99999999999
Q ss_pred cccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 264 YLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 264 ~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
|||||+++||++|||||+|| ||.++++.++++|.++..
T Consensus 1136 AIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~ 1174 (1228)
T KOG0055|consen 1136 AIARAILRNPKILLLDEATSALDSESERVVQEALDRAME 1174 (1228)
T ss_pred HHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhc
Confidence 99999999999999999999 999999999999999753
No 8
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.8e-44 Score=366.23 Aligned_cols=237 Identities=13% Similarity=0.106 Sum_probs=199.1
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc------C--CCCceEEEeEEEEcCCCCccccccCceeeeeEec
Q 021147 30 LSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT------R--IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVP 101 (317)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~ 101 (317)
+..|.......|..+.+++.+.+|+.++++.+++... . ..+.|+++||+|.|.+++.+ |+|+||+|+
T Consensus 300 ~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~~~v-----L~~i~l~i~ 374 (588)
T PRK11174 300 FYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDGKTL-----AGPLNFTLP 374 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccCCCee-----eeeeEEEEc
Confidence 4567888888899999999999999999976543211 1 12359999999877544444 999999999
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHH
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMR 181 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~ 181 (317)
+|+++|||||||||||||+++|+|+++ ++|+|++||.+ +++++.+.+|++
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~p------~~G~I~i~g~~----------------------i~~~~~~~lr~~-- 424 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFLP------YQGSLKINGIE----------------------LRELDPESWRKH-- 424 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC------CCcEEEECCEe----------------------cccCCHHHHHhh--
Confidence 999999999999999999999999993 48999999987 778899999988
Q ss_pred HhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHH
Q 021147 182 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRA 259 (317)
Q Consensus 182 ~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~ 259 (317)
|+||||++.+|+. ||+|||.++++.. .++++.++++.++++ +..+|+|+++.++++| ..|||||
T Consensus 425 -----i~~v~Q~~~LF~~--TI~eNI~~g~~~~-----~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G--~~LSGGQ 490 (588)
T PRK11174 425 -----LSWVGQNPQLPHG--TLRDNVLLGNPDA-----SDEQLQQALENAWVSEFLPLLPQGLDTPIGDQA--AGLSVGQ 490 (588)
T ss_pred -----eEEecCCCcCCCc--CHHHHhhcCCCCC-----CHHHHHHHHHHhCHHHHHHhcccccccccccCC--CCCCHHH
Confidence 9999999999976 9999999875322 234588999999985 5568999999999999 8999999
Q ss_pred HHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCC
Q 021147 260 RIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNK 316 (317)
Q Consensus 260 ~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~ 316 (317)
|||++||||++++|+++||||||| ||+.+++.+.+.|+++.+. ..|+++.+.+ +|+
T Consensus 491 rQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~-aD~ 552 (588)
T PRK11174 491 AQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ-WDQ 552 (588)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHh-CCE
Confidence 999999999999999999999999 9999999999999887432 3455655543 555
No 9
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-44 Score=380.39 Aligned_cols=241 Identities=18% Similarity=0.213 Sum_probs=208.1
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHccccccccC---------CCCceEEEeEEEEcCCCCccccccCceeeeeE
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYD 99 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~ 99 (317)
+-+-.+..+.+....+..++.++.+++++++..|..... ..+.|+++||+|+||.++.+ ..|+++||+
T Consensus 299 ~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv---~Il~g~sl~ 375 (1228)
T KOG0055|consen 299 IGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDV---KILKGVSLK 375 (1228)
T ss_pred hhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcc---hhhCCeEEE
Confidence 444456778889999999999999999999877665431 34679999999999876421 239999999
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHH
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNR 179 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~ 179 (317)
|++|+++||||||||||||++++|.|+|+ |++|+|++||.+ ++.++.+++|++
T Consensus 376 i~~G~~valVG~SGsGKST~i~LL~Rfyd-----P~~G~V~idG~d----------------------i~~~~~~~lr~~ 428 (1228)
T KOG0055|consen 376 IPSGQTVALVGPSGSGKSTLIQLLARFYD-----PTSGEVLIDGED----------------------IRNLNLKWLRSQ 428 (1228)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHhcC-----CCCceEEEcCcc----------------------chhcchHHHHhh
Confidence 99999999999999999999999999999 999999999998 778898899988
Q ss_pred HHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcH
Q 021147 180 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTD 257 (317)
Q Consensus 180 ~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSg 257 (317)
||+|+|+|.+|.. ||+|||.++++.+. ++++.++++.++++ +..+|+||.+.++++| .+|||
T Consensus 429 -------iglV~QePvlF~~--tI~eNI~~G~~dat-----~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g--~qLSG 492 (1228)
T KOG0055|consen 429 -------IGLVSQEPVLFAT--TIRENIRYGKPDAT-----REEIEEAAKAANAHDFILKLPDGYDTLVGERG--VQLSG 492 (1228)
T ss_pred -------cCeeeechhhhcc--cHHHHHhcCCCccc-----HHHHHHHHHHccHHHHHHhhHHhhcccccCCC--CCCCh
Confidence 9999999988865 99999999876544 34589999999985 6678999999999999 89999
Q ss_pred HHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCC
Q 021147 258 RARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNK 316 (317)
Q Consensus 258 G~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~ 316 (317)
||||||||||||+++|++|+|||||| ||+++++.++++|.++.+. -.|+|+-+.+ +|+
T Consensus 493 GQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~ 556 (1228)
T KOG0055|consen 493 GQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADK 556 (1228)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCE
Confidence 99999999999999999999999999 9999999999999987642 4456666665 554
No 10
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=5.9e-44 Score=370.03 Aligned_cols=239 Identities=16% Similarity=0.174 Sum_probs=202.6
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHccccccccC------CCCceEEEeEEEEcCCC-CccccccCceeeeeEec
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVP 101 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~ 101 (317)
.+.+|.......|..++.++.+.+|+.++++.+++.... ..+.|+++||+|+|++. +.+ |+|+||+|+
T Consensus 403 ~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~v-----L~~isl~i~ 477 (686)
T TIGR03797 403 SFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAKTDPGKLSGAIEVDRVTFRYRPDGPLI-----LDDVSLQIE 477 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCCCCCCCceEEEEEEEEEcCCCCccc-----eeeeEEEEC
Confidence 456778888899999999999999999999765443211 12469999999999643 334 999999999
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHH
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMR 181 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~ 181 (317)
+||.+||+|+||||||||+|+|+|+|+ |++|+|++||++ +++++...+|++
T Consensus 478 ~Ge~vaIvG~sGsGKSTLlklL~gl~~-----p~~G~I~idg~~----------------------i~~~~~~~lr~~-- 528 (686)
T TIGR03797 478 PGEFVAIVGPSGSGKSTLLRLLLGFET-----PESGSVFYDGQD----------------------LAGLDVQAVRRQ-- 528 (686)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEE----------------------cCcCCHHHHHhc--
Confidence 999999999999999999999999999 999999999987 778899999988
Q ss_pred HhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHH
Q 021147 182 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRA 259 (317)
Q Consensus 182 ~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~ 259 (317)
||||||++.+|++ |++||+.++++ .. .+++.++++.++++ +..+|+|+++.++++| ..|||||
T Consensus 529 -----i~~v~Q~~~lf~g--TI~eNi~~~~~-~~-----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G--~~LSGGQ 593 (686)
T TIGR03797 529 -----LGVVLQNGRLMSG--SIFENIAGGAP-LT-----LDEAWEAARMAGLAEDIRAMPMGMHTVISEGG--GTLSGGQ 593 (686)
T ss_pred -----cEEEccCCccCcc--cHHHHHhcCCC-CC-----HHHHHHHHHHcCcHHHHHhccccccccccCCC--CCCCHHH
Confidence 9999999999876 99999998754 22 34588999999995 4568999999999999 8999999
Q ss_pred HHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH---hcCCCcchhhcccCCC
Q 021147 260 RIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE---HADRNLSCKSCARNKV 317 (317)
Q Consensus 260 ~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~---~~~~~~~~~~~~~~~~ 317 (317)
|||+++|||++++|+++||||||| ||+.+++.+.+.++++.+ ...|+++.+.. +|||
T Consensus 594 rQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~-~D~I 654 (686)
T TIGR03797 594 RQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN-ADRI 654 (686)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc-CCEE
Confidence 999999999999999999999999 999999999999988621 13455555543 5553
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-43 Score=326.99 Aligned_cols=203 Identities=18% Similarity=0.201 Sum_probs=169.5
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||++++|+|.|..... ..+.||+||||+|++||++||||.||||||||+|+|++|.. |++|+|.++|++
T Consensus 1 mI~l~~vsK~~~~~~~-~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~-----PtsG~v~v~G~d----- 69 (339)
T COG1135 1 MIELENVSKTFGQTGT-GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER-----PTSGSVFVDGQD----- 69 (339)
T ss_pred CeEEEeeeeeeccCCC-CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCceEEEcCEe-----
Confidence 6999999999975210 01234999999999999999999999999999999999999 999999999987
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC-ChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD-SDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~a~ 229 (317)
+..++...+|+. .++||++||.+.++. ..||++|++|....... ..+.++++.++++
T Consensus 70 -----------------i~~l~~~~Lr~~----R~~IGMIFQhFnLLs-srTV~~NvA~PLeiag~~k~ei~~RV~elLe 127 (339)
T COG1135 70 -----------------LTALSEAELRQL----RQKIGMIFQHFNLLS-SRTVFENVAFPLELAGVPKAEIKQRVAELLE 127 (339)
T ss_pred -----------------cccCChHHHHHH----HhhccEEeccccccc-cchHHhhhhhhHhhcCCCHHHHHHHHHHHHH
Confidence 444554444432 233999999998876 58999999997654443 4566788889999
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
.+|++. ..+.|+ .+||||||||++|||||+.+|++|+.||||| |||+|.+.|.++|+++.+.
T Consensus 128 lVgL~d--k~~~yP---------~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIv 196 (339)
T COG1135 128 LVGLSD--KADRYP---------AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIV 196 (339)
T ss_pred HcCChh--hhccCc---------hhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEE
Confidence 999853 334688 6999999999999999999999999999999 9999999999999998654
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
-.|..+++...||||
T Consensus 197 lITHEm~Vvk~ic~rV 212 (339)
T COG1135 197 LITHEMEVVKRICDRV 212 (339)
T ss_pred EEechHHHHHHHhhhh
Confidence 456788888999886
No 12
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-43 Score=318.00 Aligned_cols=192 Identities=18% Similarity=0.248 Sum_probs=169.4
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||||+|++.. + ++|+||+|++||+++++|||||||||++|+|++|++ |++|+|+++|++
T Consensus 1 MI~~~nvsk~y~~~~-a-----v~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie-----pt~G~I~i~g~~----- 64 (309)
T COG1125 1 MIEFENVSKRYGNKK-A-----VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE-----PTSGEILIDGED----- 64 (309)
T ss_pred CceeeeeehhcCCce-e-----eeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC-----CCCceEEECCee-----
Confidence 699999999998553 3 999999999999999999999999999999999999 999999999998
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhh-ccCCCChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK-SMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~-~~~~~~~~~~~~~~~~a~ 229 (317)
+..++..++|++ ||||-|...+|+ ++||.+||++.. ...+......+++.+++.
T Consensus 65 -----------------i~~~d~~~LRr~-------IGYviQqigLFP-h~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~ 119 (309)
T COG1125 65 -----------------ISDLDPVELRRK-------IGYVIQQIGLFP-HLTVAENIATVPKLLGWDKERIKKRADELLD 119 (309)
T ss_pred -----------------cccCCHHHHHHh-------hhhhhhhcccCC-CccHHHHHHhhhhhcCCCHHHHHHHHHHHHH
Confidence 778999999998 999999988776 799999998754 345666677888999999
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHhcCCCcc
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEHADRNLS 308 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~~~~~~~ 308 (317)
.++++...+.+.|+ .+|||||+||+.+||||+.+|+++++|||++ |||.++..+++.+.++.+....-+-
T Consensus 120 lvgL~p~~~~~RyP---------~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTiv 190 (309)
T COG1125 120 LVGLDPSEYADRYP---------HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIV 190 (309)
T ss_pred HhCCCHHHHhhcCc---------hhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEE
Confidence 99996544556788 6999999999999999999999999999999 9999999999999998776555444
Q ss_pred hhhc
Q 021147 309 CKSC 312 (317)
Q Consensus 309 ~~~~ 312 (317)
++++
T Consensus 191 fVTH 194 (309)
T COG1125 191 FVTH 194 (309)
T ss_pred EEec
Confidence 4443
No 13
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2.6e-43 Score=366.33 Aligned_cols=240 Identities=17% Similarity=0.138 Sum_probs=202.1
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc--------CCCCceEEEeEEEEcCCCCccccccCceeeeeEe
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT--------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDV 100 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I 100 (317)
.+.+|.......|..+..++.+.+|+.++++.+++... ...+.|+++||+|+|++...+ |+|+||+|
T Consensus 423 ~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~i-----L~~isl~i 497 (708)
T TIGR01193 423 YFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNI-----LSDISLTI 497 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCCCCcc-----eeceeEEE
Confidence 45578888889999999999999999999876544321 113469999999999754444 99999999
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHH
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRM 180 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~ 180 (317)
++|+.+||+|+||||||||+|+|+|+|+ |++|+|++||.+ +++++..++|++
T Consensus 498 ~~G~~vaIvG~SGsGKSTLlklL~gl~~-----p~~G~I~idg~~----------------------i~~~~~~~lr~~- 549 (708)
T TIGR01193 498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQ-----ARSGEILLNGFS----------------------LKDIDRHTLRQF- 549 (708)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCcEEEECCEE----------------------HHHcCHHHHHHh-
Confidence 9999999999999999999999999999 999999999987 778899999988
Q ss_pred HHhhhhccccccccccccchhhHHHHHHhhh-ccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcH
Q 021147 181 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK-SMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTD 257 (317)
Q Consensus 181 ~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~-~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSg 257 (317)
||||||++.+|+. ||+||+.++. +.. ..+++.++++.++++ +..+|.|+++.+++.| ..|||
T Consensus 550 ------i~~v~Q~~~lf~g--TI~eNi~l~~~~~~-----~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G--~~LSg 614 (708)
T TIGR01193 550 ------INYLPQEPYIFSG--SILENLLLGAKENV-----SQDEIWAACEIAEIKDDIENMPLGYQTELSEEG--SSISG 614 (708)
T ss_pred ------eEEEecCceehhH--HHHHHHhccCCCCC-----CHHHHHHHHHHhCCHHHHHhcccccCcEecCCC--CCCCH
Confidence 9999999998875 9999999863 221 234588999999984 5568899999999999 89999
Q ss_pred HHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH----hcCCCcchhhcccCCC
Q 021147 258 RARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE----HADRNLSCKSCARNKV 317 (317)
Q Consensus 258 G~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~----~~~~~~~~~~~~~~~~ 317 (317)
|||||++||||++++|+++||||||+ ||+.+++.+.+.|+++.. ...|+++.+. .+|||
T Consensus 615 GQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~-~~D~i 678 (708)
T TIGR01193 615 GQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAK-QSDKI 678 (708)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHH-cCCEE
Confidence 99999999999999999999999999 999999999999987511 1345555543 35653
No 14
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2.4e-43 Score=366.67 Aligned_cols=240 Identities=17% Similarity=0.132 Sum_probs=201.3
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc--------------CCCCceEEEeEEEEcCCC-CccccccCc
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT--------------RIGSLTDAKNKILSYTPG-AWIENVGGM 93 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~I~~~nls~~y~~~-~~~~~~~~L 93 (317)
.+.+|.......|..+.+++.+.+|+.++++.+++... ...+.|+++||+|+|++. +.+ |
T Consensus 421 ~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~v-----L 495 (710)
T TIGR03796 421 SFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPL-----I 495 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCc-----c
Confidence 45567788889999999999999999999976543211 012369999999999753 334 9
Q ss_pred eeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCCh
Q 021147 94 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDS 173 (317)
Q Consensus 94 ~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~ 173 (317)
+|+||+|++||.+||||+||||||||+|+|+|+|+ |++|+|++||.+ +++++.
T Consensus 496 ~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~-----p~~G~I~idg~~----------------------i~~~~~ 548 (710)
T TIGR03796 496 ENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ-----PWSGEILFDGIP----------------------REEIPR 548 (710)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEe----------------------HHHCCH
Confidence 99999999999999999999999999999999999 999999999987 778898
Q ss_pred HHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccc
Q 021147 174 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGD 251 (317)
Q Consensus 174 ~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~ 251 (317)
..+|++ ||||||++.+|+. |++||+.++++.. ..+++.++++.++++ +..+|+|+.+.+++.|
T Consensus 549 ~~lr~~-------i~~v~Q~~~lf~g--Ti~eNi~l~~~~~-----~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G- 613 (710)
T TIGR03796 549 EVLANS-------VAMVDQDIFLFEG--TVRDNLTLWDPTI-----PDADLVRACKDAAIHDVITSRPGGYDAELAEGG- 613 (710)
T ss_pred HHHHhh-------eeEEecCChhhhc--cHHHHhhCCCCCC-----CHHHHHHHHHHhCCHHHHHhCcCcccceeccCC-
Confidence 889888 9999999998875 9999998764322 234588899999985 4568899999999999
Q ss_pred hhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH---hcCCCcchhhcccCCC
Q 021147 252 LLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE---HADRNLSCKSCARNKV 317 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~---~~~~~~~~~~~~~~~~ 317 (317)
..||||||||+++|||++++|+++||||||| ||+.+++.+.+.+++.-+ ...|+++.+.. +|||
T Consensus 614 -~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~-~D~I 681 (710)
T TIGR03796 614 -ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRD-CDEI 681 (710)
T ss_pred -CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEE
Confidence 8999999999999999999999999999999 999999999999986310 13455555544 5653
No 15
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.3e-43 Score=357.87 Aligned_cols=238 Identities=16% Similarity=0.109 Sum_probs=201.1
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHccccccccC-----CCCceEEEeEEEEcCCCCccccccCceeeeeEecCC
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKT 103 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~G 103 (317)
.+..|+......|..+.+.+.+++|+.++++.+++.... ..+.|+++||+|+|++...+ |+|+||+|++|
T Consensus 293 ~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~i-----l~~i~l~i~~G 367 (592)
T PRK10790 293 RLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGNDDRPLQSGRIDIDNVSFAYRDDNLV-----LQNINLSVPSR 367 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCccCCCCCeEEEEEEEEEeCCCCce-----eeceeEEEcCC
Confidence 455677788888999999999999999998754332111 12459999999999754444 99999999999
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHh
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCK 183 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~ 183 (317)
|.+||+|+||||||||+|+|+|+++ |++|+|++||.+ +.+++.+.++++
T Consensus 368 e~iaIvG~SGsGKSTLl~lL~gl~~-----p~~G~I~idg~~----------------------i~~~~~~~l~~~---- 416 (592)
T PRK10790 368 GFVALVGHTGSGKSTLASLLMGYYP-----LTEGEIRLDGRP----------------------LSSLSHSVLRQG---- 416 (592)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccC-----CCCceEEECCEE----------------------hhhCCHHHHHhh----
Confidence 9999999999999999999999999 999999999987 778899999988
Q ss_pred hhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHH
Q 021147 184 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARI 261 (317)
Q Consensus 184 ~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~q 261 (317)
|+|+||++.+|+. |+++|+.+++ .. .++++.++++.++++ +..+|+|+++.+++.| ..|||||||
T Consensus 417 ---i~~v~Q~~~lF~~--Ti~~NI~~~~-~~-----~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g--~~LSGGqrQ 483 (592)
T PRK10790 417 ---VAMVQQDPVVLAD--TFLANVTLGR-DI-----SEEQVWQALETVQLAELARSLPDGLYTPLGEQG--NNLSVGQKQ 483 (592)
T ss_pred ---eEEEccCCccccc--hHHHHHHhCC-CC-----CHHHHHHHHHHcCcHHHHHhccccccccccCCC--CCCCHHHHH
Confidence 9999999999986 9999999875 11 234588999999985 4568899999999998 899999999
Q ss_pred hhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCC
Q 021147 262 RTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNK 316 (317)
Q Consensus 262 Rl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~ 316 (317)
|+++|||++++|+++||||||+ ||+.+++.+.+.++++.+. ..|+++.+.+ +|+
T Consensus 484 RialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~-~D~ 543 (592)
T PRK10790 484 LLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVE-ADT 543 (592)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh-CCE
Confidence 9999999999999999999999 9999999999999887432 3445555443 454
No 16
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=5.4e-43 Score=363.29 Aligned_cols=240 Identities=18% Similarity=0.162 Sum_probs=204.2
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc--------CCCCceEEEeEEEEcCCC-CccccccCceeeeeE
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT--------RIGSLTDAKNKILSYTPG-AWIENVGGMTLSDYD 99 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~ 99 (317)
.+.+|.......|..+...+.+.+|+.++++.+++... ...+.|+++||+|+|++. ..+ |+|+||+
T Consensus 413 ~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~v-----L~~i~l~ 487 (694)
T TIGR03375 413 RALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPA-----LDNVSLT 487 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCCCCccc-----eeeeeEE
Confidence 55678888899999999999999999999987654221 112469999999999753 334 9999999
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHH
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNR 179 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~ 179 (317)
|++||.+||+|+||||||||+|+|+|+|+ |++|+|.+||.+ +++++...+|+.
T Consensus 488 i~~G~~iaIvG~sGsGKSTLlklL~gl~~-----p~~G~I~idg~~----------------------l~~~~~~~lr~~ 540 (694)
T TIGR03375 488 IRPGEKVAIIGRIGSGKSTLLKLLLGLYQ-----PTEGSVLLDGVD----------------------IRQIDPADLRRN 540 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEE----------------------hhhCCHHHHHhc
Confidence 99999999999999999999999999999 999999999987 778888889888
Q ss_pred HHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcH
Q 021147 180 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTD 257 (317)
Q Consensus 180 ~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSg 257 (317)
|+||||++.+|+. |++||+.++++.. ..+++.++++.++++ +..+|+|+++.++++| ..|||
T Consensus 541 -------i~~v~Q~~~lf~~--TI~eNi~~~~~~~-----~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G--~~LSg 604 (694)
T TIGR03375 541 -------IGYVPQDPRLFYG--TLRDNIALGAPYA-----DDEEILRAAELAGVTEFVRRHPDGLDMQIGERG--RSLSG 604 (694)
T ss_pred -------cEEECCChhhhhh--hHHHHHhCCCCCC-----CHHHHHHHHHHcChHHHHHhCcccccceecCCC--CCCCH
Confidence 9999999998875 9999999875422 234588999999984 5568999999999999 89999
Q ss_pred HHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 258 RARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 258 G~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
|||||+++|||++++|+++||||||| ||+.+++.+.+.+.++.+. ..|+++.+. .+|||
T Consensus 605 GQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~-~~D~i 669 (694)
T TIGR03375 605 GQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLD-LVDRI 669 (694)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEE
Confidence 99999999999999999999999999 9999999999999987432 346666553 45653
No 17
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.3e-42 Score=353.50 Aligned_cols=240 Identities=16% Similarity=0.189 Sum_probs=200.5
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc------CCCCceEEEeEEEEcCCC-CccccccCceeeeeEecC
Q 021147 30 LSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT------RIGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPK 102 (317)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~ 102 (317)
+..|.......|..+...+.+..|+.++++.+++... ...+.|+++||+|+|++. ..+ |+|+||+|++
T Consensus 294 ~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~~i-----l~~i~l~i~~ 368 (582)
T PRK11176 294 LMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRVIERAKGDIEFRNVTFTYPGKEVPA-----LRNINFKIPA 368 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCCCCCeEEEEEEEEecCCCCCcc-----ccCceEEeCC
Confidence 4456777788899999999999999999875543211 112369999999999754 334 9999999999
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHH
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRC 182 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~ 182 (317)
||.+||+|+||||||||+++|+|+++ |++|+|++||++ +.+++...++++
T Consensus 369 G~~~aIvG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~----------------------i~~~~~~~~~~~--- 418 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIANLLTRFYD-----IDEGEILLDGHD----------------------LRDYTLASLRNQ--- 418 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC-----CCCceEEECCEE----------------------hhhcCHHHHHhh---
Confidence 99999999999999999999999999 999999999987 777888888887
Q ss_pred hhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHH
Q 021147 183 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRAR 260 (317)
Q Consensus 183 ~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~ 260 (317)
|+|+||++.+|+. |+++|+.++... ..+.+++.++++.++++ ...+|+|+++.++++| .+||||||
T Consensus 419 ----i~~v~Q~~~lf~~--Ti~~Ni~~~~~~----~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g--~~LSGGqr 486 (582)
T PRK11176 419 ----VALVSQNVHLFND--TIANNIAYARTE----QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENG--VLLSGGQR 486 (582)
T ss_pred ----ceEEccCceeecc--hHHHHHhcCCCC----CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCC--CcCCHHHH
Confidence 9999999998875 999999986431 12334588899999984 4568899999999999 89999999
Q ss_pred HhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 261 IRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 261 qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
||++||||++++|+++||||||+ ||+.++..+.+.+.++.+. ..|+++.+.+ +|||
T Consensus 487 QRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~-~D~I 548 (582)
T PRK11176 487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEK-ADEI 548 (582)
T ss_pred HHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh-CCEE
Confidence 99999999999999999999999 9999999999999887432 3455655543 6653
No 18
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-43 Score=338.36 Aligned_cols=233 Identities=20% Similarity=0.237 Sum_probs=207.6
Q ss_pred cccccccc-----cccCCchhhhhhHHHHHHHHHHHHHHHHHHccccccccC--------CCCceEEEeEEEEcCCCCcc
Q 021147 21 PVDDFDIP-----LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWI 87 (317)
Q Consensus 21 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~I~~~nls~~y~~~~~~ 87 (317)
.|-||.+- .+--|+.=....++++++...-.++++++++.+++..+. ..+-|+++||+|.|..++++
T Consensus 474 tVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~v 553 (790)
T KOG0056|consen 474 TVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPGKPV 553 (790)
T ss_pred cccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCCCce
Confidence 45566532 234577777788899999999999999999887776442 34679999999999877776
Q ss_pred ccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCccccccee
Q 021147 88 ENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELV 167 (317)
Q Consensus 88 ~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~ 167 (317)
|+||||+++||+++|||||||+||||++|+|.++++ .++|.|.+||++
T Consensus 554 -----l~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd-----v~sGsI~iDgqd---------------------- 601 (790)
T KOG0056|consen 554 -----LSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD-----VNSGSITIDGQD---------------------- 601 (790)
T ss_pred -----eecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh-----ccCceEEEcCch----------------------
Confidence 999999999999999999999999999999999999 999999999998
Q ss_pred eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEE
Q 021147 168 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVV 245 (317)
Q Consensus 168 ~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~ 245 (317)
++.....++|++ ||+||||..+|+. |+..||.++++.+++++ +.++|+++++| +..+|+||.+.
T Consensus 602 Irnvt~~SLRs~-------IGVVPQDtvLFNd--TI~yNIryak~~Asnee-----vyaAAkAA~IHdrIl~fPegY~t~ 667 (790)
T KOG0056|consen 602 IRNVTQSSLRSS-------IGVVPQDTVLFND--TILYNIRYAKPSASNEE-----VYAAAKAAQIHDRILQFPEGYNTR 667 (790)
T ss_pred HHHHHHHHHHHh-------cCcccCcceeecc--eeeeheeecCCCCChHH-----HHHHHHHhhHHHHHhcCchhhhhh
Confidence 777888889988 9999999999987 89999999887766655 89999999997 67789999999
Q ss_pred EEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 246 VVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 246 i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
+||+| ..||||||||+|+||++++.|.+++|||+|| ||..+|+.++..+.+++.
T Consensus 668 VGERG--LkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca 722 (790)
T KOG0056|consen 668 VGERG--LKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA 722 (790)
T ss_pred hhhcc--cccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc
Confidence 99999 8999999999999999999999999999999 999999999999999874
No 19
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.5e-42 Score=351.32 Aligned_cols=235 Identities=13% Similarity=0.140 Sum_probs=197.8
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHcccccccc-------CCCCceEEEeEEEEcCCC-CccccccCceeeeeEecCCC
Q 021147 33 DDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT-------RIGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTT 104 (317)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge 104 (317)
+.......+..+.+++.+.+|+.++++.+++... ...+.|+++||+|+|+++ ..+ |+|+||+|++|+
T Consensus 293 ~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~i-----l~~i~~~i~~G~ 367 (574)
T PRK11160 293 ALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTTSTAAADQVSLTLNNVSFTYPDQPQPV-----LKGLSLQIKAGE 367 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccCCCCCCCeEEEEEEEEECCCCCCcc-----eecceEEECCCC
Confidence 4455667788888999999999999986654211 112469999999999754 334 999999999999
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhh
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKA 184 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~ 184 (317)
++||+||||||||||+++|+|+++ |++|+|++||.+ +++++...+|+.
T Consensus 368 ~~aivG~sGsGKSTL~~ll~g~~~-----p~~G~I~i~g~~----------------------i~~~~~~~~r~~----- 415 (574)
T PRK11160 368 KVALLGRTGCGKSTLLQLLTRAWD-----PQQGEILLNGQP----------------------IADYSEAALRQA----- 415 (574)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEE----------------------hhhCCHHHHHhh-----
Confidence 999999999999999999999999 999999999987 778888888887
Q ss_pred hhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHh
Q 021147 185 HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIR 262 (317)
Q Consensus 185 ~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qR 262 (317)
|+|+||++.+|+. |++||+.++.+. ...+++.++++.++++ +.. |+|+++.++++| ..||||||||
T Consensus 416 --i~~v~Q~~~lf~~--ti~~Ni~~~~~~-----~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g--~~LSgGqrqR 483 (574)
T PRK11160 416 --ISVVSQRVHLFSA--TLRDNLLLAAPN-----ASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGG--RQLSGGEQRR 483 (574)
T ss_pred --eeEEcccchhhcc--cHHHHhhcCCCc-----cCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCC--CCCCHHHHHH
Confidence 9999999998875 999999987532 2334588999999994 556 899999999999 8999999999
Q ss_pred hcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 263 TYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 263 l~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
+++|||++++|+++||||||+ ||+.+++.+.+.+.++.+. ..|+++.+.. +|||
T Consensus 484 ialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~-~d~i 543 (574)
T PRK11160 484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ-FDRI 543 (574)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHh-CCEE
Confidence 999999999999999999999 9999999999999987431 3455555543 5653
No 20
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.9e-42 Score=348.77 Aligned_cols=239 Identities=14% Similarity=0.174 Sum_probs=199.3
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc----C--CCCceEEEeEEEEcCCCC-ccccccCceeeeeEecC
Q 021147 30 LSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT----R--IGSLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPK 102 (317)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~I~~~nls~~y~~~~-~~~~~~~L~~isl~I~~ 102 (317)
+..+.......|..+.+++.+.+|+.++++.+++... . ..+.|+++||+|+|++.. .+ |+|+||+|++
T Consensus 273 ~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~i-----l~~i~l~i~~ 347 (529)
T TIGR02857 273 FYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAPVTAAPAPSLEFSGLSVAYPGRRAPA-----LRPVSFTVPP 347 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcCCCCCCCCeEEEEEEEEECCCCCccc-----ccceeEEECC
Confidence 3455666777899999999999999999874432111 1 123699999999997643 34 9999999999
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHH
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRC 182 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~ 182 (317)
|+.++|+||||||||||+|+|+|+++ |++|+|++||.+ +++++.+.++++
T Consensus 348 G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~I~~~g~~----------------------i~~~~~~~lr~~--- 397 (529)
T TIGR02857 348 GERVALVGPSGAGKSTLLNLLLGFVD-----PTEGSIAVNGVP----------------------LADADADSWRDQ--- 397 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEe----------------------hhhCCHHHHHhh---
Confidence 99999999999999999999999999 999999999987 777888888887
Q ss_pred hhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHH
Q 021147 183 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRAR 260 (317)
Q Consensus 183 ~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~ 260 (317)
|+|++|++.+|+. |++||+.++.+.. .++++.++++.++++ ...+|+|+++.+++.| .+||||||
T Consensus 398 ----i~~v~Q~~~lf~~--ti~~Ni~~~~~~~-----~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g--~~LSgGq~ 464 (529)
T TIGR02857 398 ----IAWVPQHPFLFAG--TIAENIRLARPDA-----SDAEIRRALERAGLDEFVAALPQGLDTLIGEGG--AGLSGGQA 464 (529)
T ss_pred ----eEEEcCCCcccCc--CHHHHHhccCCCC-----CHHHHHHHHHHcCcHHHHHhCcccccchhcccc--ccCCHHHH
Confidence 9999999998875 9999999865322 234588899999984 5568899999999999 89999999
Q ss_pred HhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 261 IRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 261 qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
||+++|||++++|+++||||||+ ||+.+++.+.+.++++.+. ..|+++.+. .+|||
T Consensus 465 qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i 526 (529)
T TIGR02857 465 QRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE-RADRI 526 (529)
T ss_pred HHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH-hCCEE
Confidence 99999999999999999999999 9999999999999987421 355666654 36664
No 21
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-42 Score=311.47 Aligned_cols=191 Identities=18% Similarity=0.222 Sum_probs=157.0
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.++++++|++.|++. .+ |+||||+|.+||+++||||||||||||+|+|+|+.+ |++|+|.++|++
T Consensus 2 ~~l~i~~v~~~f~~~-~v-----l~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~-----p~~G~V~~~g~~---- 66 (248)
T COG1116 2 ALLEIEGVSKSFGGV-EV-----LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK-----PTSGEVLLDGRP---- 66 (248)
T ss_pred ceEEEEeeEEEeCce-EE-----eccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCcc----
Confidence 468999999999863 33 999999999999999999999999999999999999 999999999986
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVA 228 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a 228 (317)
+.+..+ .+|||||+..+|+ .+||.+|+.++..... ...+..+++.+++
T Consensus 67 ------------------v~~p~~------------~~~~vFQ~~~LlP-W~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L 115 (248)
T COG1116 67 ------------------VTGPGP------------DIGYVFQEDALLP-WLTVLDNVALGLELRGKSKAEARERAKELL 115 (248)
T ss_pred ------------------cCCCCC------------CEEEEeccCcccc-hhhHHhhheehhhccccchHhHHHHHHHHH
Confidence 212111 1888888887665 6899999998765433 3344556788889
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+|+. .+.+.|+ .+||||||||++||||++.+|++++||||++ ||+.|+..+++.+.++.+.
T Consensus 116 ~~VgL~--~~~~~~P---------~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~Tv 184 (248)
T COG1116 116 ELVGLA--GFEDKYP---------HQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTV 184 (248)
T ss_pred HHcCCc--chhhcCc---------cccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEE
Confidence 999973 2445788 6999999999999999999999999999999 9999999999999998766
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|++.-+..+.|||
T Consensus 185 llVTHdi~EAv~LsdRi 201 (248)
T COG1116 185 LLVTHDVDEAVYLADRV 201 (248)
T ss_pred EEEeCCHHHHHhhhCEE
Confidence 345555555555554
No 22
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3.3e-42 Score=379.27 Aligned_cols=225 Identities=12% Similarity=0.098 Sum_probs=192.5
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHcccccccc------------CCCCceEEEeEEEEcCCC--CccccccCceeeee
Q 021147 33 DDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT------------RIGSLTDAKNKILSYTPG--AWIENVGGMTLSDY 98 (317)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~I~~~nls~~y~~~--~~~~~~~~L~~isl 98 (317)
........|..+.+++.+..|++++++.+++... ...+.|+|+||+|+|++. ..+ |+|+||
T Consensus 1115 ~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~v-----L~~lsl 1189 (1466)
T PTZ00265 1115 YAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPI-----YKDLTF 1189 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCcc-----ccCeeE
Confidence 3556778889999999999999999976542210 112459999999999743 234 999999
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhcccCCC-----------------------------------------------
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK----------------------------------------------- 131 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~----------------------------------------------- 131 (317)
+|++|+++|||||||||||||+++|.|+|+|.+
T Consensus 1190 ~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1269 (1466)
T PTZ00265 1190 SCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGED 1269 (1466)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999410
Q ss_pred --CCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHh
Q 021147 132 --FASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAV 209 (317)
Q Consensus 132 --~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~ 209 (317)
.-|++|+|++||.+ +++++...+|++ ||||+|++.+|+. ||+|||.+
T Consensus 1270 ~~~~~~~G~I~idG~d----------------------i~~~~~~~lR~~-------i~~V~Qep~LF~g--TIreNI~~ 1318 (1466)
T PTZ00265 1270 STVFKNSGKILLDGVD----------------------ICDYNLKDLRNL-------FSIVSQEPMLFNM--SIYENIKF 1318 (1466)
T ss_pred cccCCCCCeEEECCEE----------------------HHhCCHHHHHhh-------ccEeCCCCccccc--cHHHHHhc
Confidence 01269999999987 788999999988 9999999999865 99999999
Q ss_pred hhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCH
Q 021147 210 LKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDP 286 (317)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~ 286 (317)
+.+.. .++++.++++.++++ +..+|+||+|.++++| ..|||||||||+|||||+++|++|||||||| ||+
T Consensus 1319 g~~~a-----t~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G--~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~ 1391 (1466)
T PTZ00265 1319 GKEDA-----TREDVKRACKFAAIDEFIESLPNKYDTNVGPYG--KSLSGGQKQRIAIARALLREPKILLLDEATSSLDS 1391 (1466)
T ss_pred CCCCC-----CHHHHHHHHHHcCCHHHHHhCccccCCccCCCC--CcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 85432 234589999999995 6679999999999999 8999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHH
Q 021147 287 ENELIIVDMLRYCL 300 (317)
Q Consensus 287 ~t~~~l~~~l~~l~ 300 (317)
++++.+++.|.++.
T Consensus 1392 ~sE~~I~~~L~~~~ 1405 (1466)
T PTZ00265 1392 NSEKLIEKTIVDIK 1405 (1466)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999874
No 23
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.3e-42 Score=359.52 Aligned_cols=218 Identities=16% Similarity=0.169 Sum_probs=190.1
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc-------CCCCceEEEeEEEEcCCC--CccccccCceeeeeE
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT-------RIGSLTDAKNKILSYTPG--AWIENVGGMTLSDYD 99 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~I~~~nls~~y~~~--~~~~~~~~L~~isl~ 99 (317)
.+..+.......+..+.+++.+.+|+.++++.+++... ...+.|+++||+|+|++. ..+ |+|+||+
T Consensus 429 ~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~v-----L~~isl~ 503 (711)
T TIGR00958 429 QLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPV-----LKGLTFT 503 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCCCCcc-----ccCceEE
Confidence 45667778888999999999999999999976554321 123469999999999753 234 9999999
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHH
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNR 179 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~ 179 (317)
|++||++|||||||||||||+++|.|+++ |++|+|++||++ +++++...++++
T Consensus 504 i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~-----p~~G~I~idg~~----------------------i~~~~~~~lr~~ 556 (711)
T TIGR00958 504 LHPGEVVALVGPSGSGKSTVAALLQNLYQ-----PTGGQVLLDGVP----------------------LVQYDHHYLHRQ 556 (711)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCEEEECCEE----------------------HHhcCHHHHHhh
Confidence 99999999999999999999999999999 999999999987 778888888888
Q ss_pred HHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcH
Q 021147 180 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTD 257 (317)
Q Consensus 180 ~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSg 257 (317)
|+|++|++.+|+. |++||+.++.+... ++++.++++.++++ +..+|+|+++.++++| ..|||
T Consensus 557 -------i~~v~Q~~~lF~g--TIreNI~~g~~~~~-----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G--~~LSG 620 (711)
T TIGR00958 557 -------VALVGQEPVLFSG--SVRENIAYGLTDTP-----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKG--SQLSG 620 (711)
T ss_pred -------ceEEecCcccccc--CHHHHHhcCCCCCC-----HHHHHHHHHHcCCHHHHHhCCCccCCcccCCC--CcCCH
Confidence 9999999998875 99999998754222 34588999999985 4567889999999999 89999
Q ss_pred HHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHH
Q 021147 258 RARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVD 294 (317)
Q Consensus 258 G~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~ 294 (317)
|||||++||||++++|+++||||||| ||+++++.+.+
T Consensus 621 GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~ 658 (711)
T TIGR00958 621 GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE 658 (711)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH
Confidence 99999999999999999999999999 99999999988
No 24
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-42 Score=336.30 Aligned_cols=182 Identities=20% Similarity=0.274 Sum_probs=169.3
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.+.|+|+||+|.|++++++ |+++||+|++||.+||||+|||||||++|+|.++++ ++|+|++||++
T Consensus 349 ~~~I~F~dV~f~y~~k~~i-----L~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d------~sG~I~IdG~d--- 414 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGPKRKV-----LKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD------YSGSILIDGQD--- 414 (591)
T ss_pred CCcEEEEeeEEEeCCCCce-----ecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc------cCCcEEECCee---
Confidence 4569999999999887766 999999999999999999999999999999999997 58999999998
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
+...+.+.+|+. ||||||+..+|+. ||..||.++++...+.+ +.++|
T Consensus 415 -------------------ik~~~~~SlR~~-------Ig~VPQd~~LFnd--TIl~NI~YGn~sas~ee-----V~e~~ 461 (591)
T KOG0057|consen 415 -------------------IKEVSLESLRQS-------IGVVPQDSVLFND--TILYNIKYGNPSASDEE-----VVEAC 461 (591)
T ss_pred -------------------HhhhChHHhhhh-------eeEeCCcccccch--hHHHHhhcCCCCcCHHH-----HHHHH
Confidence 778999999998 9999999999986 99999999987666544 99999
Q ss_pred HHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 229 TTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 229 ~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
+.+++| +..+|+||.|.+|++| ..||||||||+++|||++++|++++|||||| ||.+||..+.+++...
T Consensus 462 k~a~~hd~i~~l~~GY~T~VGerG--~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~ 533 (591)
T KOG0057|consen 462 KRAGLHDVISRLPDGYQTLVGERG--LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV 533 (591)
T ss_pred HHcCcHHHHHhccccchhhHhhcc--cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh
Confidence 999997 5678999999999999 9999999999999999999999999999999 9999999999999884
No 25
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4e-42 Score=314.41 Aligned_cols=195 Identities=18% Similarity=0.273 Sum_probs=167.0
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+++++||++.|++. .+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |.+|+|+++|++
T Consensus 2 ~L~~~~ls~~y~~~-~i-----l~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~-----p~~G~V~l~g~~----- 65 (258)
T COG1120 2 MLEVENLSFGYGGK-PI-----LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK-----PKSGEVLLDGKD----- 65 (258)
T ss_pred eeEEEEEEEEECCe-eE-----EecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCCEEEECCCc-----
Confidence 68999999999855 34 999999999999999999999999999999999999 999999999998
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-c----CCCChHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-M----EGDSDVEKQYNQ 225 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~----~~~~~~~~~~~~ 225 (317)
+..++.+++.++ ++|+||.+. .++.+||+|-+.++.. + ....+.+.+.+.
T Consensus 66 -----------------i~~~~~kelAk~-------ia~vpQ~~~-~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~ 120 (258)
T COG1120 66 -----------------IASLSPKELAKK-------LAYVPQSPS-APFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVE 120 (258)
T ss_pred -----------------hhhcCHHHHhhh-------EEEeccCCC-CCCCcEEeehHhhcCCcccccccCCCHhHHHHHH
Confidence 777888888777 999999874 5557899999988752 1 112345566788
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++++.+++.... ...+ .+||||||||+.|||||+.+|++++|||||+ ||..++..++++++++.+.
T Consensus 121 ~aL~~~~~~~la---~r~~--------~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~ 189 (258)
T COG1120 121 EALELLGLEHLA---DRPV--------DELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKG 189 (258)
T ss_pred HHHHHhCcHHHh---cCcc--------cccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcC
Confidence 899999985333 3445 7999999999999999999999999999999 9999999999999999744
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
.-|++.++..++|++
T Consensus 190 ~tvv~vlHDlN~A~ryad~~ 209 (258)
T COG1120 190 LTVVMVLHDLNLAARYADHL 209 (258)
T ss_pred CEEEEEecCHHHHHHhCCEE
Confidence 457788888888874
No 26
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.3e-41 Score=345.10 Aligned_cols=240 Identities=16% Similarity=0.147 Sum_probs=200.4
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc------CCCCceEEEeEEEEcCCC-CccccccCceeeeeEec
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT------RIGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVP 101 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~ 101 (317)
.+..|.......|..+.+++.+.+|+.++++.+++... .....|+++||+|+|++. ..+ |+|+||+|+
T Consensus 282 ~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~i-----l~~inl~i~ 356 (571)
T TIGR02203 282 ALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPGRDRPA-----LDSISLVIE 356 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEEEEEEEEcCCCCCcc-----ccCeeEEec
Confidence 45567778888999999999999999999876544221 112459999999999653 334 999999999
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHH
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMR 181 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~ 181 (317)
+||.++|+|+||||||||+++|+|+++ |++|+|+++|.+ +..++...++++
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~gl~~-----~~~G~I~i~g~~----------------------i~~~~~~~~~~~-- 407 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPRFYE-----PDSGQILLDGHD----------------------LADYTLASLRRQ-- 407 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCeEEECCEe----------------------HHhcCHHHHHhh--
Confidence 999999999999999999999999999 999999999987 677888888887
Q ss_pred HhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHH
Q 021147 182 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRA 259 (317)
Q Consensus 182 ~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~ 259 (317)
|+|+||++.+|++ |++||+.+++.. +..++++.++++.++++ ...+|+|+++.++++| ..|||||
T Consensus 408 -----i~~v~Q~~~lf~~--Ti~~Ni~~~~~~----~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g--~~LSgGq 474 (571)
T TIGR02203 408 -----VALVSQDVVLFND--TIANNIAYGRTE----QADRAEIERALAAAYAQDFVDKLPLGLDTPIGENG--VLLSGGQ 474 (571)
T ss_pred -----ceEEccCcccccc--cHHHHHhcCCCC----CCCHHHHHHHHHHcChHHHHHhCcCcccceecCCC--CcCCHHH
Confidence 9999999998876 999999876421 12245688999999984 4567889999999999 8999999
Q ss_pred HHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCC
Q 021147 260 RIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNK 316 (317)
Q Consensus 260 ~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~ 316 (317)
|||++||||++++|+++||||||+ ||+.+++.+.+.|+++.+. ..|+.+.+ +.+|+
T Consensus 475 rQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~-~~~D~ 536 (571)
T TIGR02203 475 RQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTI-EKADR 536 (571)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHH-HhCCE
Confidence 999999999999999999999999 9999999999999887431 34555443 33554
No 27
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=9e-42 Score=348.01 Aligned_cols=241 Identities=20% Similarity=0.225 Sum_probs=199.0
Q ss_pred ccccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc--------CCCCceEEEeEEEEcCCCCccccccCceeeeeE
Q 021147 28 PLLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT--------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYD 99 (317)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~ 99 (317)
..+.++.......|..+..++.+..++.++++.+++... ...+.|+++||+|+|++...+ |+|+||+
T Consensus 283 ~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~i-----L~~inl~ 357 (588)
T PRK13657 283 TLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSRQG-----VEDVSFE 357 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEEEeCCCCce-----ecceeEE
Confidence 456677778888899999999999999998876433211 012359999999999754444 9999999
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHH
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNR 179 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~ 179 (317)
+++|++++|+|+||||||||+|+|+|+++ |++|+|++||.+ +++++...++++
T Consensus 358 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~-----p~~G~I~i~g~~----------------------i~~~~~~~~r~~ 410 (588)
T PRK13657 358 AKPGQTVAIVGPTGAGKSTLINLLQRVFD-----PQSGRILIDGTD----------------------IRTVTRASLRRN 410 (588)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCEE----------------------hhhCCHHHHHhh
Confidence 99999999999999999999999999999 999999999987 778888888888
Q ss_pred HHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcH
Q 021147 180 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTD 257 (317)
Q Consensus 180 ~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSg 257 (317)
|+|+||++.+|++ |++||+.++++... ++++.++++.+++. ...+|+|+++.+++.| ..|||
T Consensus 411 -------i~~v~Q~~~lf~~--Ti~~Ni~~~~~~~~-----d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g--~~LSg 474 (588)
T PRK13657 411 -------IAVVFQDAGLFNR--SIEDNIRVGRPDAT-----DEEMRAAAERAQAHDFIERKPDGYDTVVGERG--RQLSG 474 (588)
T ss_pred -------eEEEecCcccccc--cHHHHHhcCCCCCC-----HHHHHHHHHHhCHHHHHHhCcccccchhcCCC--CCCCH
Confidence 9999999999976 99999998643222 33477888888884 4457889999999998 89999
Q ss_pred HHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 258 RARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 258 G~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
||+||++||||++++|+++||||||+ ||+.+++.+.+.++++.+. ..|+.+.+. .+|||
T Consensus 475 Gq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~-~~D~i 539 (588)
T PRK13657 475 GERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVR-NADRI 539 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHH-hCCEE
Confidence 99999999999999999999999999 9999999999999886431 334444443 35553
No 28
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-41 Score=302.06 Aligned_cols=200 Identities=17% Similarity=0.235 Sum_probs=163.1
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++||++.|++++.+ |+||||+|++||++||||+||||||||+|+|+|+.+ |++|+|.++|.+
T Consensus 2 ~~i~~~nl~k~yp~~~~a-----L~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d-----~t~G~i~~~g~~---- 67 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQA-----LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD-----PTSGEILFNGVQ---- 67 (258)
T ss_pred ceEEEeeeeeecCCCcee-----eeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC-----CCcceEEecccc----
Confidence 479999999999766665 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc---------cCCCChHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS---------MEGDSDVE 220 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~---------~~~~~~~~ 220 (317)
+.....+++++. ..+|||+||.+.+.+ .++|.+|+..+.. +......+
T Consensus 68 ------------------i~~~~~k~lr~~----r~~iGmIfQ~~nLv~-r~sv~~NVl~grl~~~s~~~slfglfsk~d 124 (258)
T COG3638 68 ------------------ITKLKGKELRKL----RRDIGMIFQQFNLVP-RLSVLENVLLGRLGYTSTWRSLFGLFSKED 124 (258)
T ss_pred ------------------hhccchHHHHHH----HHhceeEeccCCccc-ccHHHHHHHhhhcccchHHHHHhCCCCHHH
Confidence 333443333322 233999999998776 5899999976532 12234567
Q ss_pred HHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 221 KQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 221 ~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
..+..++++.+|+-...+ ..+ .+|||||+||++|||||+.+|++++.|||++ |||.+.+.+++.|+++
T Consensus 125 k~~Al~aLervgi~~~A~---qra--------~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~i 193 (258)
T COG3638 125 KAQALDALERVGILDKAY---QRA--------STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDI 193 (258)
T ss_pred HHHHHHHHHHcCcHHHHH---HHh--------ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHH
Confidence 778889999999832221 122 6899999999999999999999999999999 9999999999999998
Q ss_pred HHh-------cCCCcchhhcccCCC
Q 021147 300 LEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 300 ~~~-------~~~~~~~~~~~~~~~ 317 (317)
.+. .-|.+..+.++||||
T Consensus 194 n~~~g~Tvi~nLH~vdlA~~Y~~Ri 218 (258)
T COG3638 194 NQEDGITVIVNLHQVDLAKKYADRI 218 (258)
T ss_pred HHHcCCEEEEEechHHHHHHHHhhh
Confidence 765 346677788888875
No 29
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.2e-41 Score=300.37 Aligned_cols=186 Identities=19% Similarity=0.253 Sum_probs=151.6
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+++++||++.|..+... +.+|++|||+|++||+++|+||||||||||+++|.|+.. |++|.|.++|++
T Consensus 1 ~i~~~~v~k~y~~~~~~--~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~-----pt~G~v~i~g~d----- 68 (226)
T COG1136 1 MIELKNVSKIYGLGGEK--VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK-----PTSGEVLINGKD----- 68 (226)
T ss_pred CcEEeeeEEEeccCCcc--eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCceEEECCEE-----
Confidence 47899999999654221 233999999999999999999999999999999999999 999999999986
Q ss_pred EecccCCCCcccccceeeccCCh---HHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCCh-HHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDS---SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD-VEKQYNQI 226 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~---~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~-~~~~~~~~ 226 (317)
+..++. ..+|+ +.||||||+..+++ .+|+.||+.+...+..... ...++...
T Consensus 69 -----------------~~~l~~~~~~~~R~------~~iGfvFQ~~nLl~-~ltv~ENv~lpl~~~~~~~~~~~~~~~~ 124 (226)
T COG1136 69 -----------------LTKLSEKELAKLRR------KKIGFVFQNFNLLP-DLTVLENVELPLLIAGKSAGRRKRAAEE 124 (226)
T ss_pred -----------------cCcCCHHHHHHHHH------HhEEEECccCCCCC-CCCHHHHHHhHHHHcCCChhHHHHHHHH
Confidence 444443 23333 35999999998776 5999999997654444333 34566778
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
+++.+++... +.+.++ .+|||||+||+||||||+.+|++++.||||. ||.++.+.++++++++.+.
T Consensus 125 l~~~lgl~~~-~~~~~p---------~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~ 191 (226)
T COG1136 125 LLEVLGLEDR-LLKKKP---------SELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE 191 (226)
T ss_pred HHHhcCChhh-hccCCc---------hhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHh
Confidence 8999897421 112344 6999999999999999999999999999999 9999999999999998765
No 30
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2e-41 Score=293.23 Aligned_cols=196 Identities=19% Similarity=0.207 Sum_probs=163.2
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+|+||+++|+++..+ |+||||+|++||++-|+||||||||||+|+|++... |++|+|+++|.+..
T Consensus 1 mI~f~~V~k~Y~~g~~a-----L~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~-----pt~G~i~~~~~dl~--- 67 (223)
T COG2884 1 MIRFENVSKAYPGGREA-----LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER-----PTRGKILVNGHDLS--- 67 (223)
T ss_pred CeeehhhhhhcCCCchh-----hhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc-----CCCceEEECCeecc---
Confidence 69999999999888544 999999999999999999999999999999999999 99999999998721
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~ 229 (317)
.++..+...+|++ ||+||||..++. ..||+||++|...-.. ......+++.++++
T Consensus 68 ----------------~l~~~~iP~LRR~-------IGvVFQD~rLL~-~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~ 123 (223)
T COG2884 68 ----------------RLKGREIPFLRRQ-------IGVVFQDFRLLP-DRTVYENVALPLRVIGKPPREIRRRVSEVLD 123 (223)
T ss_pred ----------------cccccccchhhhe-------eeeEeeeccccc-cchHhhhhhhhhhccCCCHHHHHHHHHHHHH
Confidence 1334444567776 999999998776 6899999998764433 33566788889999
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
.+|+-. ..+..+ .+|||||+||++||||++.+|++||.||||. |||.+...+++++.++...
T Consensus 124 ~VgL~~--k~~~lP---------~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ 192 (223)
T COG2884 124 LVGLKH--KARALP---------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLM 192 (223)
T ss_pred Hhccch--hhhcCc---------cccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEE
Confidence 999821 122455 5999999999999999999999999999999 9999999999999998543
Q ss_pred cCCCcchhhccc
Q 021147 303 ADRNLSCKSCAR 314 (317)
Q Consensus 303 ~~~~~~~~~~~~ 314 (317)
|.|+.+.+..+.
T Consensus 193 ATHd~~lv~~~~ 204 (223)
T COG2884 193 ATHDLELVNRMR 204 (223)
T ss_pred EeccHHHHHhcc
Confidence 666666655544
No 31
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.4e-41 Score=349.05 Aligned_cols=240 Identities=18% Similarity=0.206 Sum_probs=201.8
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc-------CCCCceEEEeEEEEcCCC-CccccccCceeeeeEe
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT-------RIGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDV 100 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I 100 (317)
.+..|.......|..+.+++.+.+|+.++++.+++... ...+.|+++||+|+|++. +.+ |+|+||+|
T Consensus 406 ~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~~i-----l~~i~l~i 480 (694)
T TIGR01846 406 RVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFRYAPDSPEV-----LSNLNLDI 480 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCeEEEEEEEEEcCCCCccc-----cccceEEE
Confidence 45567788888999999999999999999976544321 112469999999999644 334 99999999
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHH
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRM 180 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~ 180 (317)
++|+.+||+|+||||||||+|+|+|+++ |++|+|++||.+ +++++...+|+.
T Consensus 481 ~~G~~vaivG~sGsGKSTL~~ll~g~~~-----p~~G~I~idg~~----------------------i~~~~~~~~r~~- 532 (694)
T TIGR01846 481 KPGEFIGIVGPSGSGKSTLTKLLQRLYT-----PQHGQVLVDGVD----------------------LAIADPAWLRRQ- 532 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEe----------------------hhhCCHHHHHHh-
Confidence 9999999999999999999999999999 999999999987 778888888887
Q ss_pred HHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHH
Q 021147 181 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDR 258 (317)
Q Consensus 181 ~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG 258 (317)
|+||+|++.+|+. |++||+.++.+.. ..+++.++++.++++ +..+|+|+++.++++| ..||||
T Consensus 533 ------i~~v~q~~~lf~~--ti~eNi~~~~~~~-----~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g--~~LSgG 597 (694)
T TIGR01846 533 ------MGVVLQENVLFSR--SIRDNIALCNPGA-----PFEHVIHAAKLAGAHDFISELPQGYNTEVGEKG--ANLSGG 597 (694)
T ss_pred ------CeEEccCCeehhh--hHHHHHhcCCCCC-----CHHHHHHHHHHcChHHHHHhCcCccCcEecCCC--CCCCHH
Confidence 9999999998875 9999998765322 234588889999984 4568899999999998 899999
Q ss_pred HHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 259 ARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 259 ~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
||||+++|||++++|+++||||||+ ||+.+++.+.+.++++.+. ..|+++.+.. +|||
T Consensus 598 q~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i 661 (694)
T TIGR01846 598 QRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA-CDRI 661 (694)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh-CCEE
Confidence 9999999999999999999999999 9999999999999987421 3455555543 5653
No 32
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-41 Score=301.81 Aligned_cols=201 Identities=16% Similarity=0.166 Sum_probs=163.1
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+++++|+++.|+.+..+ ..+|++|||+|.+||++||||+||||||||+|+|+|+.+ |++|+|.++|++
T Consensus 2 ~~l~v~nl~~~y~~~~~~--~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~-----p~~G~I~~~G~~---- 70 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFA--FHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK-----PSSGSILLDGKP---- 70 (252)
T ss_pred ceEEEeceEEEecCCcch--hhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC-----CCCceEEECCcc----
Confidence 579999999999876521 123999999999999999999999999999999999999 999999999975
Q ss_pred eEecccCCCCcccccceeeccCC-hHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhccCCCChHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSD-SSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 227 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~ 227 (317)
..... .+... +.|.+|||+|. -+++..||.+-+.-... ....+..++++.++
T Consensus 71 ------------------~~~~~~~~~~~-------~~VQmVFQDp~~SLnP~~tv~~~l~Epl~-~~~~~~~~~~i~~~ 124 (252)
T COG1124 71 ------------------LAPKKRAKAFY-------RPVQMVFQDPYSSLNPRRTVGRILSEPLR-PHGLSKSQQRIAEL 124 (252)
T ss_pred ------------------cCccccchhhc-------cceeEEecCCccccCcchhHHHHHhhhhc-cCCccHHHHHHHHH
Confidence 21111 11222 23899999886 57777788777653221 12334556668999
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.++++..- .+.++ .+|||||+||+||||||..+|+++|+||||| ||...+..+.+++.++.+.
T Consensus 125 L~~VgL~~~~-l~R~P---------~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt 194 (252)
T COG1124 125 LDQVGLPPSF-LDRRP---------HELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLT 194 (252)
T ss_pred HHHcCCCHHH-HhcCc---------hhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCce
Confidence 9999996332 23566 5899999999999999999999999999999 9999999999999999876
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
-+|++..+..+||||
T Consensus 195 ~l~IsHdl~~v~~~cdRi 212 (252)
T COG1124 195 YLFISHDLALVEHMCDRI 212 (252)
T ss_pred EEEEeCcHHHHHHHhhhe
Confidence 478899999999986
No 33
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-41 Score=296.25 Aligned_cols=203 Identities=18% Similarity=0.194 Sum_probs=164.4
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.+.++++||++.|++.+. |+|||++|++++++||+||||||||||+|+++++.+.-++.-.+|+|.++|++..
T Consensus 5 ~~~~~~~~l~~yYg~~~a------L~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~- 77 (253)
T COG1117 5 IPAIEVRDLNLYYGDKHA------LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIY- 77 (253)
T ss_pred cceeEecceeEEECchhh------hccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeecc-
Confidence 356999999999986643 9999999999999999999999999999999999985444455799999998721
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC-hHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS-DVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~ 227 (317)
-...+...+|++ ||+|||.|.-|+ +||+||++++....... ..-.+.++..
T Consensus 78 -------------------~~~~d~~~lRr~-------vGMVFQkPnPFp--~SIydNVayG~r~~g~~~~~ldeiVe~s 129 (253)
T COG1117 78 -------------------DPKVDVVELRRR-------VGMVFQKPNPFP--MSIYDNVAYGLRLHGIKDKELDEIVESS 129 (253)
T ss_pred -------------------CCCCCHHHHHHH-------heeeccCCCCCC--chHHHHHHHhHHhhccchHHHHHHHHHH
Confidence 124577788888 999999998776 79999999986543322 3445667778
Q ss_pred HHHcCCCcc---cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 228 ATTFNCPYL---SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 228 a~~~~l~~~---~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
++.++++.. .+. ... ..|||||+||++|||||+.+|+++++||||| |||.+...|-++|.++.+.
T Consensus 130 Lk~AaLWdEVKDrL~-~sa---------~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~y 199 (253)
T COG1117 130 LKKAALWDEVKDRLH-KSA---------LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKY 199 (253)
T ss_pred HHHhHhHHHhHHHhh-CCc---------cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhcc
Confidence 888888421 121 122 6899999999999999999999999999999 9999999999999998754
Q ss_pred ----cCCCcchhhcccCC
Q 021147 303 ----ADRNLSCKSCARNK 316 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~ 316 (317)
..||..+++.+.|+
T Consensus 200 TIviVTHnmqQAaRvSD~ 217 (253)
T COG1117 200 TIVIVTHNMQQAARVSDY 217 (253)
T ss_pred EEEEEeCCHHHHHHHhHh
Confidence 46677776666654
No 34
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-40 Score=328.92 Aligned_cols=220 Identities=15% Similarity=0.155 Sum_probs=188.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHccccccccC-------CCCc--eEEEeEEEEcCCCCccccccCceeeeeEecCCCE
Q 021147 35 EGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR-------IGSL--TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTS 105 (317)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~--I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~ 105 (317)
-.....|..-.....+.+.+..+++.+...... ..+. ++++|+++.|++++.+ ++|+||++++|+.
T Consensus 275 R~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~~~-----l~~l~~t~~~g~~ 349 (559)
T COG4988 275 RDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPA-----LSDLNLTIKAGQL 349 (559)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCCcc-----cCCceeEecCCcE
Confidence 344557777777888888999898877553321 1223 4455999999887654 9999999999999
Q ss_pred EEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhh
Q 021147 106 LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAH 185 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 185 (317)
+||||+||||||||+++|+|+.+ |++|+|.+||.+ .++.+...|+++
T Consensus 350 talvG~SGaGKSTLl~lL~G~~~-----~~~G~I~vng~~----------------------l~~l~~~~~~k~------ 396 (559)
T COG4988 350 TALVGASGAGKSTLLNLLLGFLA-----PTQGEIRVNGID----------------------LRDLSPEAWRKQ------ 396 (559)
T ss_pred EEEECCCCCCHHHHHHHHhCcCC-----CCCceEEECCcc----------------------ccccCHHHHHhH------
Confidence 99999999999999999999999 999999999998 778899999998
Q ss_pred hccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhc
Q 021147 186 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTY 264 (317)
Q Consensus 186 ~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~ 264 (317)
+++|+|+|++|.. |++||+.++++...+ +++.++++.+++. ....|+|.+++++++| ..|||||+||++
T Consensus 397 -i~~v~Q~p~lf~g--TireNi~l~~~~~s~-----e~i~~al~~a~l~~~v~~p~GLdt~ige~G--~~LSgGQ~QRla 466 (559)
T COG4988 397 -ISWVSQNPYLFAG--TIRENILLARPDASD-----EEIIAALDQAGLLEFVPKPDGLDTVIGEGG--AGLSGGQAQRLA 466 (559)
T ss_pred -eeeeCCCCccccc--cHHHHhhccCCcCCH-----HHHHHHHHHhcHHHhhcCCCcccchhccCC--CCCCHHHHHHHH
Confidence 9999999999976 999999988754333 3488899999883 2223789999999999 899999999999
Q ss_pred ccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 265 LGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 265 iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
+|||+.++++++||||||+ ||.+||+.+.+.|.++.+.
T Consensus 467 LARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ 505 (559)
T COG4988 467 LARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ 505 (559)
T ss_pred HHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC
Confidence 9999999999999999999 9999999999999998754
No 35
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.8e-41 Score=317.40 Aligned_cols=180 Identities=19% Similarity=0.214 Sum_probs=155.6
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|.+|+++||++.|++.. + |++|||+|++||+++|+||||||||||||+|+||.+ |++|+|+++|++
T Consensus 1 M~~i~l~~v~K~yg~~~-~-----l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~-----~~~G~I~i~g~~--- 66 (338)
T COG3839 1 MAELELKNVRKSFGSFE-V-----LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE-----PTSGEILIDGRD--- 66 (338)
T ss_pred CcEEEEeeeEEEcCCce-e-----eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEE---
Confidence 46799999999997654 4 999999999999999999999999999999999999 999999999987
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~ 227 (317)
++++++++ +. |++|||+..+++ +|||++|++|+..... ..++..+++.++
T Consensus 67 -------------------vt~l~P~~--R~-------iamVFQ~yALyP-hmtV~~Niaf~Lk~~~~~k~ei~~rV~ev 117 (338)
T COG3839 67 -------------------VTDLPPEK--RG-------IAMVFQNYALYP-HMTVYENIAFGLKLRGVPKAEIDKRVKEV 117 (338)
T ss_pred -------------------CCCCChhH--CC-------EEEEeCCccccC-CCcHHHHhhhhhhhCCCchHHHHHHHHHH
Confidence 56666653 22 999999987665 7999999999876544 345667889999
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
++.+++... -+.++ .+|||||+||+|+||||+++|++++||||.| ||+..+..+...|+++.+.
T Consensus 118 a~~L~l~~l--L~r~P---------~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~ 182 (338)
T COG3839 118 AKLLGLEHL--LNRKP---------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHER 182 (338)
T ss_pred HHHcCChhH--HhcCc---------ccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHh
Confidence 999998422 22455 6999999999999999999999999999999 9999999999999997654
No 36
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.7e-41 Score=305.16 Aligned_cols=195 Identities=21% Similarity=0.260 Sum_probs=161.6
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+.+|+++||++.|++. .+ |+||||+|++|++++||||||||||||+|+|+|+++ |.+|+|.+.|++
T Consensus 2 ~~~i~v~nl~v~y~~~-~v-----l~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~-----p~~G~i~~~g~~--- 67 (254)
T COG1121 2 MPMIEVENLTVSYGNR-PV-----LEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK-----PSSGEIKIFGKP--- 67 (254)
T ss_pred CcEEEEeeeEEEECCE-ee-----eeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCcceEEEcccc---
Confidence 4579999999999865 45 999999999999999999999999999999999999 999999999975
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhccC-----CCChHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSME-----GDSDVEKQ 222 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~~-----~~~~~~~~ 222 (317)
..+... +.+ ||||||... -..+++||+|-+.++.... ...+.+.+
T Consensus 68 -------------------~~~~~~---~~~-------IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~ 118 (254)
T COG1121 68 -------------------VRKRRK---RLR-------IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKE 118 (254)
T ss_pred -------------------cccccc---CCe-------EEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHH
Confidence 211111 122 999999542 3556789999998764221 22345577
Q ss_pred HHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 223 ~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.+.++++.+++.... +..+ .+|||||+||+.|||||+.+|++++||||++ +|+.++..+.++|.++.+
T Consensus 119 ~v~~aL~~Vgm~~~~---~r~i--------~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~ 187 (254)
T COG1121 119 KVDEALERVGMEDLR---DRQI--------GELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ 187 (254)
T ss_pred HHHHHHHHcCchhhh---CCcc--------cccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 889999999985433 4566 7999999999999999999999999999999 999999999999999976
Q ss_pred h------cCCCcchhhcccCCC
Q 021147 302 H------ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~------~~~~~~~~~~~~~~~ 317 (317)
. ..|+++.+...+|+|
T Consensus 188 eg~tIl~vtHDL~~v~~~~D~v 209 (254)
T COG1121 188 EGKTVLMVTHDLGLVMAYFDRV 209 (254)
T ss_pred CCCEEEEEeCCcHHhHhhCCEE
Confidence 4 567888888888875
No 37
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=9.3e-41 Score=339.34 Aligned_cols=224 Identities=15% Similarity=0.238 Sum_probs=192.3
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc---------CCCCceEEEeEEEEcCCC--CccccccCceeee
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT---------RIGSLTDAKNKILSYTPG--AWIENVGGMTLSD 97 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~I~~~nls~~y~~~--~~~~~~~~L~~is 97 (317)
.+..|.......|..+.+++.+.+|+.++++.+++... ...+.|+++||+|+|++. +.+ |+|+|
T Consensus 286 ~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~i-----L~~in 360 (576)
T TIGR02204 286 MVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPA-----LDGLN 360 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCcc-----cccee
Confidence 45667888888999999999999999999876543111 112359999999999753 234 99999
Q ss_pred eEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHH
Q 021147 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLR 177 (317)
Q Consensus 98 l~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r 177 (317)
|+|++||.++|+|+||||||||+|+|+|+++ |++|+|++||.+ ++.++...++
T Consensus 361 l~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~-----p~~G~I~i~g~~----------------------i~~~~~~~~~ 413 (576)
T TIGR02204 361 LTVRPGETVALVGPSGAGKSTLFQLLLRFYD-----PQSGRILLDGVD----------------------LRQLDPAELR 413 (576)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCEEEECCEE----------------------HHhcCHHHHH
Confidence 9999999999999999999999999999999 999999999987 6778888888
Q ss_pred HHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcC
Q 021147 178 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSL 255 (317)
Q Consensus 178 ~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~L 255 (317)
+. ++|+||++.+|+. |++||+.++.+.. ..+++.++++.+++. ...+|+|.++.+++.| ..|
T Consensus 414 ~~-------i~~~~Q~~~lf~~--Ti~~Ni~~~~~~~-----~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g--~~L 477 (576)
T TIGR02204 414 AR-------MALVPQDPVLFAA--SVMENIRYGRPDA-----TDEEVEAAARAAHAHEFISALPEGYDTYLGERG--VTL 477 (576)
T ss_pred Hh-------ceEEccCCccccc--cHHHHHhcCCCCC-----CHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCC--CcC
Confidence 87 9999999998876 9999998865322 134588899999884 4457889999999988 899
Q ss_pred cHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 256 TDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 256 SgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
|||||||+++|||++++|+++||||||+ ||+.+++.+.+.++++.
T Consensus 478 SgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~ 523 (576)
T TIGR02204 478 SGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM 523 (576)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999 99999999999998874
No 38
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.1e-40 Score=336.88 Aligned_cols=224 Identities=17% Similarity=0.156 Sum_probs=190.2
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc------CCCCceEEEeEEEEcCCC-CccccccCceeeeeEec
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT------RIGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVP 101 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~ 101 (317)
.+..|.......|..+..++.+.+|+.++++.+++... ...+.|+++|++|+|+.. ..+ |+|+||+|+
T Consensus 265 ~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~~~~-----l~~i~~~i~ 339 (569)
T PRK10789 265 LMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIRQFTYPQTDHPA-----LENVNFTLK 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCcEEEEEEEEECCCCCCcc-----ccCeeEEEC
Confidence 34456667778889999999999999999876543211 112359999999999753 334 999999999
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHH
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMR 181 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~ 181 (317)
+|++++|+||||||||||+++|+|+++ |++|+|+++|++ +.+++...+++.
T Consensus 340 ~G~~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~i~~~g~~----------------------~~~~~~~~~~~~-- 390 (569)
T PRK10789 340 PGQMLGICGPTGSGKSTLLSLIQRHFD-----VSEGDIRFHDIP----------------------LTKLQLDSWRSR-- 390 (569)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCEEEECCEE----------------------HhhCCHHHHHhh--
Confidence 999999999999999999999999999 999999999987 667787788877
Q ss_pred HhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHH
Q 021147 182 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRA 259 (317)
Q Consensus 182 ~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~ 259 (317)
++|++|++.+|+. |++||+.++.+.. ..+++.++++.++++ ...+|+|+.+.++++| ..|||||
T Consensus 391 -----i~~v~q~~~lf~~--ti~~Ni~~~~~~~-----~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g--~~LSgGq 456 (569)
T PRK10789 391 -----LAVVSQTPFLFSD--TVANNIALGRPDA-----TQQEIEHVARLASVHDDILRLPQGYDTEVGERG--VMLSGGQ 456 (569)
T ss_pred -----eEEEccCCeeccc--cHHHHHhcCCCCC-----CHHHHHHHHHHcCCHHHHHhCcCcccceecCCC--CcCCHHH
Confidence 9999999998875 9999998764321 234577788888884 4457889999999998 8999999
Q ss_pred HHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 260 RIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 260 ~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
|||+++|||++++|+++||||||+ ||+.+++.+.+.|+++.
T Consensus 457 ~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~ 498 (569)
T PRK10789 457 KQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG 498 (569)
T ss_pred HHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999 99999999999998864
No 39
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.4e-40 Score=334.76 Aligned_cols=240 Identities=19% Similarity=0.236 Sum_probs=196.6
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc-----CCCCceEEEeEEEEcCCC-CccccccCceeeeeEecC
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT-----RIGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPK 102 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~ 102 (317)
.+..|.......|..+.+++.+.+|+.++++.+++... ...+.|+++||+|+|+++ ..+ |+|+||+|++
T Consensus 269 ~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~-----l~~~~~~i~~ 343 (544)
T TIGR01842 269 RALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAMPLPEPEGHLSVENVTIVPPGGKKPT-----LRGISFRLQA 343 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCCCeEEEEEEEEEcCCCCccc-----cccceEEEcC
Confidence 45567888888999999999999999999976543221 122469999999999754 334 9999999999
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHH
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRC 182 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~ 182 (317)
|+.++|+||||||||||+++|+|+++ |++|+|.++|.+ +..++...+++.
T Consensus 344 G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~----------------------i~~~~~~~~~~~--- 393 (544)
T TIGR01842 344 GEALAIIGPSGSGKSTLARLIVGIWP-----PTSGSVRLDGAD----------------------LKQWDRETFGKH--- 393 (544)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEe----------------------hhhCCHHHHhhh---
Confidence 99999999999999999999999999 999999999987 666777777777
Q ss_pred hhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHH
Q 021147 183 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRAR 260 (317)
Q Consensus 183 ~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~ 260 (317)
++|+||++.+|+. |++||+.+.... ...+++.++++.++++ ...+|+|+.+.++++| ..||||||
T Consensus 394 ----i~~v~q~~~lf~~--ti~~Ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g--~~LSgGq~ 460 (544)
T TIGR01842 394 ----IGYLPQDVELFPG--TVAENIARFGEN-----ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGG--ATLSGGQR 460 (544)
T ss_pred ----eEEecCCcccccc--cHHHHHhccCCC-----CCHHHHHHHHHHhChHHHHHhCccccccccCCCc--CCCCHHHH
Confidence 9999999998875 999999864421 1233477778888773 4457889999999998 89999999
Q ss_pred HhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 261 IRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 261 qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
||+++|||++++|+++||||||+ ||+.+++.+.+.++++... ..|+++.. +.+|+|
T Consensus 461 qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~-~~~d~i 523 (544)
T TIGR01842 461 QRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLL-GCVDKI 523 (544)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHH-HhCCEE
Confidence 99999999999999999999999 9999999999999887421 34555543 235653
No 40
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=3.2e-40 Score=336.60 Aligned_cols=240 Identities=15% Similarity=0.165 Sum_probs=196.8
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc--------CCCCceEEEeEEEEcCCCCccccccCceeeeeEe
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT--------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDV 100 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I 100 (317)
.+.++.......|..+..++.+.+|+.++++.+++... ...+.|+++||+|+|++...+ |+|+||+|
T Consensus 284 ~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~-----l~~i~~~i 358 (585)
T TIGR01192 284 LLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQG-----VFDVSFEA 358 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEECCCCCcc-----ccceeEEE
Confidence 45567777888899999999999999998875433211 112369999999999764444 99999999
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHH
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRM 180 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~ 180 (317)
++|++++|+||||||||||+++|+|+++ |++|+|+++|.+ +.+++...+++.
T Consensus 359 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~----------------------~~~~~~~~~~~~- 410 (585)
T TIGR01192 359 KAGQTVAIVGPTGAGKTTLINLLQRVYD-----PTVGQILIDGID----------------------INTVTRESLRKS- 410 (585)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHccCCC-----CCCCEEEECCEE----------------------hhhCCHHHHHhh-
Confidence 9999999999999999999999999999 999999999987 667777778777
Q ss_pred HHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHH
Q 021147 181 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDR 258 (317)
Q Consensus 181 ~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG 258 (317)
++|++|++.+|+. |++||+.++.+.. ..+++.++++.++++ ...+++|+.+.++++| ..||||
T Consensus 411 ------i~~v~q~~~lf~~--ti~~Ni~~~~~~~-----~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~--~~LSgG 475 (585)
T TIGR01192 411 ------IATVFQDAGLFNR--SIRENIRLGREGA-----TDEEVYEAAKAAAAHDFILKRSNGYDTLVGERG--NRLSGG 475 (585)
T ss_pred ------eEEEccCCccCcc--cHHHHHhcCCCCC-----CHHHHHHHHHHhCcHHHHHhccccccchhcCCC--CCCCHH
Confidence 9999999988864 9999998764322 233467778888774 3457889999999998 899999
Q ss_pred HHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 259 ARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 259 ~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
||||+++|||++++|+++||||||+ ||+.+++.+.+.++++.+. ..|+++.+.+ +|+|
T Consensus 476 q~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~-~d~i 539 (585)
T TIGR01192 476 ERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRN-ADLV 539 (585)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHc-CCEE
Confidence 9999999999999999999999999 9999999999999887432 3455555543 5653
No 41
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.2e-40 Score=366.62 Aligned_cols=235 Identities=13% Similarity=0.071 Sum_probs=196.0
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHcccccccc-----------CCCCceEEEeEEEEcCCC-CccccccCceeeeeEe
Q 021147 33 DDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT-----------RIGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDV 100 (317)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I 100 (317)
+.......|..+.....+.+|+.++++.+++... +..+.|+++||+|+|+++ ..+ |+|+||+|
T Consensus 1185 ~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~v-----L~~isl~I 1259 (1495)
T PLN03232 1185 LLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPV-----LHGLSFFV 1259 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcc-----cccceEEE
Confidence 4445566677788889999999999876544221 113469999999999644 344 99999999
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHH
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRM 180 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~ 180 (317)
++||.+||||+||||||||+++|.|+++ |++|+|++||.+ +++++...+|++
T Consensus 1260 ~~GekvaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~IdG~d----------------------i~~i~~~~lR~~- 1311 (1495)
T PLN03232 1260 SPSEKVGVVGRTGAGKSSMLNALFRIVE-----LEKGRIMIDDCD----------------------VAKFGLTDLRRV- 1311 (1495)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCceEEECCEE----------------------hhhCCHHHHHhh-
Confidence 9999999999999999999999999999 999999999987 778898999988
Q ss_pred HHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHH
Q 021147 181 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDR 258 (317)
Q Consensus 181 ~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG 258 (317)
|++|||+|.+|++ ||++|+.++.. ...+++.++++.++++ +..+|+|+++.++++| .+||||
T Consensus 1312 ------i~iVpQdp~LF~g--TIr~NL~~~~~------~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G--~~LSgG 1375 (1495)
T PLN03232 1312 ------LSIIPQSPVLFSG--TVRFNIDPFSE------HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGG--ENFSVG 1375 (1495)
T ss_pred ------cEEECCCCeeeCc--cHHHHcCCCCC------CCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCC--CCCCHH
Confidence 9999999999976 99999976431 2234588999999984 5567889999999999 899999
Q ss_pred HHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 259 ARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 259 ~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
||||++||||++++|+++||||||| ||++|++.+++.|++..+. -.|+++.+.+ +|||
T Consensus 1376 QrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrI 1439 (1495)
T PLN03232 1376 QRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKI 1439 (1495)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEE
Confidence 9999999999999999999999999 9999999999999987432 3455555544 4553
No 42
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-40 Score=323.74 Aligned_cols=216 Identities=17% Similarity=0.193 Sum_probs=188.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHccccccccC------CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCC
Q 021147 39 DSWDSLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPK 112 (317)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~S 112 (317)
.......+...+..|+.++++++++...+ ....++++||||+|++.+..+ |+|+||++++||.+||+|+|
T Consensus 298 ~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~~~~~~~~~l~~~~vsF~y~~~~~~~----L~~~~l~l~~GEkvAIlG~S 373 (573)
T COG4987 298 GAFQHLGQVIASARRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTKA----LKNFNLTLAQGEKVAILGRS 373 (573)
T ss_pred hhHHHhhHHHHHHHHHhhhccCCcccCCCccccCCccceeeeccceeecCCCccch----hhccceeecCCCeEEEECCC
Confidence 34466667788888999998887665443 111699999999998776322 99999999999999999999
Q ss_pred CChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhcccccc
Q 021147 113 GSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 192 (317)
Q Consensus 113 GsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q 192 (317)
|||||||+.+|.|.|+ |++|+|.++|.+ +..++.+.+++. +++++|
T Consensus 374 GsGKSTllqLl~~~~~-----~~~G~i~~~g~~----------------------~~~l~~~~~~e~-------i~vl~Q 419 (573)
T COG4987 374 GSGKSTLLQLLAGAWD-----PQQGSITLNGVE----------------------IASLDEQALRET-------ISVLTQ 419 (573)
T ss_pred CCCHHHHHHHHHhccC-----CCCCeeeECCcC----------------------hhhCChhhHHHH-------Hhhhcc
Confidence 9999999999999999 999999999987 677888888887 999999
Q ss_pred ccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceec
Q 021147 193 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLG 270 (317)
Q Consensus 193 ~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~ 270 (317)
.+++|.. |+++|+.+.++..+++ ++.++++.++++ ....|+|+.+.+++.| ..|||||+||++|||++.
T Consensus 420 r~hlF~~--Tlr~NL~lA~~~AsDE-----el~~aL~qvgL~~l~~~~p~gl~t~lge~G--~~LSGGE~rRLAlAR~LL 490 (573)
T COG4987 420 RVHLFSG--TLRDNLRLANPDASDE-----ELWAALQQVGLEKLLESAPDGLNTWLGEGG--RRLSGGERRRLALARALL 490 (573)
T ss_pred chHHHHH--HHHHHHhhcCCCCCHH-----HHHHHHHHcCHHHHHHhChhhhhchhccCC--CcCCchHHHHHHHHHHHH
Confidence 9999976 9999999887765544 389999999995 4456789999999999 899999999999999999
Q ss_pred cccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 271 IPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 271 ~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
++.+++||||||. ||+.|++.+++.+.+..+
T Consensus 491 ~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~ 522 (573)
T COG4987 491 HDAPLWLLDEPTEGLDPITERQVLALLFEHAE 522 (573)
T ss_pred cCCCeEEecCCcccCChhhHHHHHHHHHHHhc
Confidence 9999999999999 999999999999988654
No 43
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-40 Score=315.23 Aligned_cols=181 Identities=18% Similarity=0.146 Sum_probs=154.9
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
++.|+++||+++|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+.. |++|+|.++|++
T Consensus 3 ~~~l~i~~v~k~yg~~-~a-----v~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~-----p~~G~I~l~G~~--- 68 (352)
T COG3842 3 KPALEIRNVSKSFGDF-TA-----VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ-----PSSGEILLDGED--- 68 (352)
T ss_pred CceEEEEeeeeecCCe-eE-----EecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEE---
Confidence 4579999999999843 33 999999999999999999999999999999999999 999999999997
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CC-hHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DS-DVEKQYNQI 226 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~-~~~~~~~~~ 226 (317)
+..+++. ++. ||+|||+..||+ ++||++|++|+..... .. ....+++.+
T Consensus 69 -------------------i~~lpp~--kR~-------ig~VFQ~YALFP-HltV~~NVafGLk~~~~~~~~~i~~rv~e 119 (352)
T COG3842 69 -------------------ITDVPPE--KRP-------IGMVFQSYALFP-HMTVEENVAFGLKVRKKLKKAEIKARVEE 119 (352)
T ss_pred -------------------CCCCChh--hcc-------cceeecCcccCC-CCcHHHHhhhhhhhcCCCCHHHHHHHHHH
Confidence 5566654 233 999999998776 7999999999876333 22 345678889
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHhc
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEHA 303 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~~ 303 (317)
+++.+++.. +.+.++ .+|||||+||+|+||||+.+|++++||||.| ||.+-+..++..++++.+..
T Consensus 120 ~L~lV~L~~--~~~R~p---------~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~ 186 (352)
T COG3842 120 ALELVGLEG--FADRKP---------HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL 186 (352)
T ss_pred HHHHcCchh--hhhhCh---------hhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhc
Confidence 999999843 233455 6999999999999999999999999999999 99999999999999987654
No 44
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.7e-40 Score=365.95 Aligned_cols=235 Identities=13% Similarity=0.077 Sum_probs=195.8
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHcccccccc-----------CCCCceEEEeEEEEcCCC-CccccccCceeeeeEe
Q 021147 33 DDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT-----------RIGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDV 100 (317)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I 100 (317)
........|..+.....+.+|+.++++.+++... +..+.|+|+||+|+|++. ..+ |+||||+|
T Consensus 1188 ~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~V-----L~~is~~I 1262 (1622)
T PLN03130 1188 LLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPV-----LHGLSFEI 1262 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCce-----ecceeEEE
Confidence 3444445566667788899999998876544211 123469999999999654 234 99999999
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHH
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRM 180 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~ 180 (317)
++||.+||||+||||||||+++|.|+++ |++|+|++||.+ +++++...+|++
T Consensus 1263 ~~GekVaIVGrSGSGKSTLl~lL~rl~~-----p~~G~I~IDG~d----------------------I~~i~l~~LR~~- 1314 (1622)
T PLN03130 1263 SPSEKVGIVGRTGAGKSSMLNALFRIVE-----LERGRILIDGCD----------------------ISKFGLMDLRKV- 1314 (1622)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCcCC-----CCCceEEECCEe----------------------cccCCHHHHHhc-
Confidence 9999999999999999999999999999 999999999998 778999999988
Q ss_pred HHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHH
Q 021147 181 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDR 258 (317)
Q Consensus 181 ~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG 258 (317)
|++|||+|.+|++ ||++|+.++.. ..++++.++++.++++ +..+|+|+++.++++| .+||||
T Consensus 1315 ------IsiVpQdp~LF~G--TIreNLd~~~~------~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G--~nLSgG 1378 (1622)
T PLN03130 1315 ------LGIIPQAPVLFSG--TVRFNLDPFNE------HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAG--ENFSVG 1378 (1622)
T ss_pred ------cEEECCCCccccc--cHHHHhCcCCC------CCHHHHHHHHHHcCcHHHHHhCccccCccccCCC--CCCCHH
Confidence 9999999999976 99999976532 1345689999999994 5568899999999999 899999
Q ss_pred HHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 259 ARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 259 ~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
||||++|||||+++|+++||||||| ||++|++.+++.|++..+. -.|+++.+.+ +|||
T Consensus 1379 QrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrI 1442 (1622)
T PLN03130 1379 QRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRI 1442 (1622)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEE
Confidence 9999999999999999999999999 9999999999999987432 3455655554 4553
No 45
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-39 Score=296.40 Aligned_cols=198 Identities=19% Similarity=0.242 Sum_probs=167.8
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+++++|++|+|+++..+ |+++||+|++|++++|+|+||||||||+++|+|+++ |++|.|.++|.+
T Consensus 2 ~~i~~~~l~~~y~~~~~~-----l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~-----p~~G~v~~~g~~---- 67 (235)
T COG1122 2 RMIEAENLSFRYPGRKAA-----LKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK-----PTSGEVLVDGLD---- 67 (235)
T ss_pred ceEEEEEEEEEcCCCcee-----eeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc-----CCCCEEEECCee----
Confidence 579999999999776343 999999999999999999999999999999999999 999999999986
Q ss_pred eEecccCCCCcccccceeec-cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-CCChHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIR-RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQYNQIV 227 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~ 227 (317)
+. ..+...++++ +|||+|+|..+...-||.+.++|+.... ...++..+++.++
T Consensus 68 ------------------~~~~~~~~~~~~~-------vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~ 122 (235)
T COG1122 68 ------------------TSSEKSLLELRQK-------VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEA 122 (235)
T ss_pred ------------------ccchhhHHHhhcc-------eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHH
Confidence 22 2445556665 9999999976666679999999986443 3334567788899
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++.... ..+. ..||||||||++||.+|+.+|+++||||||+ ||+.++..+.+.++++.+.
T Consensus 123 l~~vgl~~~~---~r~p--------~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~t 191 (235)
T COG1122 123 LELVGLEELL---DRPP--------FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKT 191 (235)
T ss_pred HHHcCchhhc---cCCc--------cccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCe
Confidence 9999984332 3344 7999999999999999999999999999999 9999999999999998755
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|++..+.+++|||
T Consensus 192 ii~~tHd~~~~~~~ad~v 209 (235)
T COG1122 192 IIIVTHDLELVLEYADRV 209 (235)
T ss_pred EEEEeCcHHHHHhhCCEE
Confidence 578888888888875
No 46
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.4e-39 Score=290.97 Aligned_cols=201 Identities=18% Similarity=0.238 Sum_probs=160.8
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.+.|++++|+++|+++. + ++||||+|++||+++|+||||||||||+|+|.|+++ |++|+|+++|.+
T Consensus 6 ~~~I~vr~v~~~fG~~~-I-----ld~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~-----P~~GeI~i~G~~--- 71 (263)
T COG1127 6 EPLIEVRGVTKSFGDRV-I-----LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR-----PDKGEILIDGED--- 71 (263)
T ss_pred cceEEEeeeeeecCCEE-E-----ecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC-----CCCCeEEEcCcc---
Confidence 56899999999997664 4 999999999999999999999999999999999999 999999999987
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC--hHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS--DVEKQYNQI 226 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~--~~~~~~~~~ 226 (317)
+.+.+..++. ++.+++|++||...||. .+||+||++|........ +..++.+..
T Consensus 72 -------------------i~~ls~~~~~----~ir~r~GvlFQ~gALFs-sltV~eNVafplre~~~lp~~~i~~lv~~ 127 (263)
T COG1127 72 -------------------IPQLSEEELY----EIRKRMGVLFQQGALFS-SLTVFENVAFPLREHTKLPESLIRELVLM 127 (263)
T ss_pred -------------------hhccCHHHHH----HHHhheeEEeecccccc-ccchhHhhheehHhhccCCHHHHHHHHHH
Confidence 4444433221 12234999999998887 699999999864333323 233444445
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
-++++|++... .+.|+ .+|||||++|+++|||++.+|+++++||||+ |||.+...+.++|+++.+.
T Consensus 128 KL~~VGL~~~~-~~~~P---------sELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~ 197 (263)
T COG1127 128 KLELVGLRGAA-ADLYP---------SELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGL 197 (263)
T ss_pred HHHhcCCChhh-hhhCc---------hhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 57888885221 23577 6999999999999999999999999999999 9999999999999998765
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
-.|++.-+...+|||
T Consensus 198 T~i~VTHDl~s~~~i~Drv 216 (263)
T COG1127 198 TVIMVTHDLDSLLTIADRV 216 (263)
T ss_pred EEEEEECChHHHHhhhceE
Confidence 456666666666664
No 47
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=3.9e-39 Score=308.54 Aligned_cols=199 Identities=17% Similarity=0.190 Sum_probs=160.7
Q ss_pred ceEEEeEEEEcCCC---CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 71 LTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 71 ~I~~~nls~~y~~~---~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
||+++||+++|+++ ..+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 1 mI~~~~lsk~y~~~~~~~~~-----L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~-----p~~G~I~i~G~~-- 68 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQA-----LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTSGSVIVDGQD-- 68 (343)
T ss_pred CEEEEEEEEEECCCCcceEE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEE--
Confidence 58999999999632 223 999999999999999999999999999999999999 999999999986
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQI 226 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~ 226 (317)
+..++...++.. .+.|||+||++.++. .+||++|+++...... ......+++.+
T Consensus 69 --------------------i~~~~~~~l~~~----r~~Ig~v~Q~~~l~~-~~tv~eni~~~~~~~~~~~~~~~~~v~e 123 (343)
T TIGR02314 69 --------------------LTTLSNSELTKA----RRQIGMIFQHFNLLS-SRTVFGNVALPLELDNTPKDEIKRKVTE 123 (343)
T ss_pred --------------------CCcCCHHHHHHH----hcCEEEEECCccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 444444333221 234999999987664 5799999987643222 22334566788
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++... .+.++ .+||||||||++|||||+.+|+++|+||||+ ||+.++..+.+.|+++.+.
T Consensus 124 ~l~~vgL~~~--~~~~~---------~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~ 192 (343)
T TIGR02314 124 LLALVGLGDK--HDSYP---------SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGL 192 (343)
T ss_pred HHHHcCCchh--hhCCh---------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 8999998422 22344 6999999999999999999999999999999 9999999999999998653
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|+...+..+||||
T Consensus 193 tiiliTH~~~~v~~~~d~v 211 (343)
T TIGR02314 193 TILLITHEMDVVKRICDCV 211 (343)
T ss_pred EEEEEeCCHHHHHHhCCEE
Confidence 467788888888875
No 48
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.4e-39 Score=358.85 Aligned_cols=222 Identities=14% Similarity=0.065 Sum_probs=191.9
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHHHHHHHccccccc----c-------CCCCceEEEeEEEEcCCC-CccccccCceeee
Q 021147 30 LSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLR----T-------RIGSLTDAKNKILSYTPG-AWIENVGGMTLSD 97 (317)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-------~~~~~I~~~nls~~y~~~-~~~~~~~~L~~is 97 (317)
+..+.......|..+.....+.+|+.++++.+++.. . +..+.|+|+||+|+|+++ ..+ |+|||
T Consensus 1232 ~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~v-----L~~is 1306 (1522)
T TIGR00957 1232 VTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLV-----LRHIN 1306 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCccc-----cccee
Confidence 345566777888999999999999999986554322 0 123569999999999754 334 99999
Q ss_pred eEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHH
Q 021147 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLR 177 (317)
Q Consensus 98 l~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r 177 (317)
|+|++||.+||||+||||||||+++|.|+++ |++|+|++||.+ +++++...+|
T Consensus 1307 ~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~-----~~~G~I~IdG~d----------------------I~~i~~~~LR 1359 (1522)
T TIGR00957 1307 VTIHGGEKVGIVGRTGAGKSSLTLGLFRINE-----SAEGEIIIDGLN----------------------IAKIGLHDLR 1359 (1522)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcc-----CCCCeEEECCEE----------------------ccccCHHHHH
Confidence 9999999999999999999999999999999 999999999998 7889999999
Q ss_pred HHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcC
Q 021147 178 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSL 255 (317)
Q Consensus 178 ~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~L 255 (317)
++ |+++||+|.+|++ ||++|+.... ....+++.++++.++++ +..+|+|+++.++++| ..|
T Consensus 1360 ~~-------i~iVpQdp~LF~g--TIr~NLdp~~------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G--~~L 1422 (1522)
T TIGR00957 1360 FK-------ITIIPQDPVLFSG--SLRMNLDPFS------QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGG--ENL 1422 (1522)
T ss_pred hc-------CeEECCCCcccCc--cHHHHcCccc------CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCC--CcC
Confidence 88 9999999999976 9999996321 12234588999999984 5567889999999999 899
Q ss_pred cHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 256 TDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 256 SgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
|||||||++||||++++|+++||||||| ||++|++.+++.|++..
T Consensus 1423 SgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~ 1468 (1522)
T TIGR00957 1423 SVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF 1468 (1522)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999 99999999999998864
No 49
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=6.2e-39 Score=287.64 Aligned_cols=196 Identities=17% Similarity=0.204 Sum_probs=155.1
Q ss_pred ceEEEeEEEEcCCC-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 71 LTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 71 ~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
||+++||+++|+++ ..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 ~l~~~~l~~~~~~~~~~i-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~---- 66 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPA-----LDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK-----PTRGKIRFNGQD---- 66 (216)
T ss_pred CeEEEEEEEEecCCCeeE-----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEe----
Confidence 58999999999653 234 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCChH---HHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC-hHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSS---SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS-DVEKQYNQ 225 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~---~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~-~~~~~~~~ 225 (317)
+...+.. .+++. ++|++|++.++. .+|+.+|+.+........ ....+++.
T Consensus 67 ------------------~~~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~ 120 (216)
T TIGR00960 67 ------------------LTRLRGREIPFLRRH-------IGMVFQDHRLLS-DRTVYDNVAFPLRIIGVPPRDANERVS 120 (216)
T ss_pred ------------------hhhcChhHHHHHHHh-------ceEEecCccccc-cccHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 3333222 23333 999999987554 579999998754322111 23345677
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++++.+++.... .... .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 121 ~~l~~~~l~~~~---~~~~--------~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 189 (216)
T TIGR00960 121 AALEKVGLEGKA---HALP--------MQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGT 189 (216)
T ss_pred HHHHHcCChhhh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCC
Confidence 888888874221 2233 6899999999999999999999999999999 9999999999999988542
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+|+|
T Consensus 190 tii~vsH~~~~~~~~~d~i 208 (216)
T TIGR00960 190 TVLVATHDINLVETYRHRT 208 (216)
T ss_pred EEEEEeCCHHHHHHhCCEE
Confidence 456777777777764
No 50
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=3.4e-39 Score=357.57 Aligned_cols=223 Identities=11% Similarity=0.035 Sum_probs=188.8
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHHHHHHHccccccc--------------------------------------cCCCCc
Q 021147 30 LSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLR--------------------------------------TRIGSL 71 (317)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~ 71 (317)
+.+++......|..+.....+.+|+.++++..++.. ....+.
T Consensus 1229 l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 1308 (1560)
T PTZ00243 1229 TTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGS 1308 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCe
Confidence 345556667778888899999999999885322110 001246
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+|+||+|+|+++...+ |+||||+|++||.+||||+||||||||+++|.|+++ |++|+|++||.+
T Consensus 1309 I~f~nVsf~Y~~~~~~v----L~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~-----p~~G~I~IDG~d------ 1373 (1560)
T PTZ00243 1309 LVFEGVQMRYREGLPLV----LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE-----VCGGEIRVNGRE------ 1373 (1560)
T ss_pred EEEEEEEEEeCCCCCce----eecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEE------
Confidence 99999999997653322 999999999999999999999999999999999999 999999999998
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHc
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF 231 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~ 231 (317)
+..++.+.+|++ |+++||++.+|++ ||++||.... ....+++.++++.+
T Consensus 1374 ----------------i~~i~l~~LR~~-------I~iVpQdp~LF~g--TIreNIdp~~------~~sdeeI~~Al~~a 1422 (1560)
T PTZ00243 1374 ----------------IGAYGLRELRRQ-------FSMIPQDPVLFDG--TVRQNVDPFL------EASSAEVWAALELV 1422 (1560)
T ss_pred ----------------cccCCHHHHHhc-------ceEECCCCccccc--cHHHHhCccc------CCCHHHHHHHHHHC
Confidence 778888899888 9999999999976 9999996432 12235699999999
Q ss_pred CCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccc-cceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 232 NCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIP-PAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 232 ~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~-p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+++ +..+++|+++.++++| .+||||||||++|||||+++ |+++||||||| ||+.+++.+++.|++..
T Consensus 1423 ~l~~~I~~lp~Gldt~vge~G--~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~ 1493 (1560)
T PTZ00243 1423 GLRERVASESEGIDSRVLEGG--SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF 1493 (1560)
T ss_pred CChHHHhhCcccccccccCCc--CcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC
Confidence 995 5567899999999999 89999999999999999995 89999999999 99999999999998864
No 51
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.6e-38 Score=298.62 Aligned_cols=196 Identities=19% Similarity=0.268 Sum_probs=164.0
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
..++++||+++|+....+ |+||||+|++|+++||+||||||||||+|+|+|++. |++|+|.++|.+
T Consensus 3 ~~i~~~~l~k~~~~~~~~-----l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~-----p~~G~i~i~G~~---- 68 (293)
T COG1131 3 EVIEVRNLTKKYGGDKTA-----LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK-----PTSGEILVLGYD---- 68 (293)
T ss_pred ceeeecceEEEeCCCCEE-----EeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEEcCEe----
Confidence 468899999999843334 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVA 228 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a 228 (317)
... +...++++ |||+||++. +...+|++||+.|...... .....++++.+++
T Consensus 69 ------------------~~~-~~~~~~~~-------igy~~~~~~-~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l 121 (293)
T COG1131 69 ------------------VVK-EPAKVRRR-------IGYVPQEPS-LYPELTVRENLEFFARLYGLSKEEAEERIEELL 121 (293)
T ss_pred ------------------Ccc-CHHHHHhh-------eEEEccCCC-CCccccHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 211 14455665 999999997 6668999999998654332 2244566788999
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.++++... +..+ ..||+|||||+.||+||+.+|+++||||||+ |||.++..+.+.|+++.+.
T Consensus 122 ~~~~L~~~~---~~~~--------~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tv 190 (293)
T COG1131 122 ELFGLEDKA---NKKV--------RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTI 190 (293)
T ss_pred HHcCCchhh---Ccch--------hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEE
Confidence 999985322 4445 7999999999999999999999999999999 9999999999999999764
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
+.|.+..+..+||||
T Consensus 191 lissH~l~e~~~~~d~v 207 (293)
T COG1131 191 LLSTHILEEAEELCDRV 207 (293)
T ss_pred EEeCCcHHHHHHhCCEE
Confidence 567788888888875
No 52
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-38 Score=305.79 Aligned_cols=196 Identities=18% Similarity=0.178 Sum_probs=157.2
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|.+|+++||+++|++...+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 m~~l~i~~l~~~~~~~~~~-----l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~-----p~~G~I~~~g~~--- 67 (356)
T PRK11650 1 MAGLKLQAVRKSYDGKTQV-----IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER-----ITSGEIWIGGRV--- 67 (356)
T ss_pred CCEEEEEeEEEEeCCCCEE-----EeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-----CCceEEEECCEE---
Confidence 3479999999999433334 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~ 227 (317)
+...++. ++ .|||+||++.+|+ .+||++|+.++..... ......+++.++
T Consensus 68 -------------------i~~~~~~--~r-------~ig~v~Q~~~lfp-~~tv~eNi~~~~~~~~~~~~~~~~~~~~~ 118 (356)
T PRK11650 68 -------------------VNELEPA--DR-------DIAMVFQNYALYP-HMSVRENMAYGLKIRGMPKAEIEERVAEA 118 (356)
T ss_pred -------------------CCCCCHH--HC-------CEEEEeCCccccC-CCCHHHHHHhHHhhcCCCHHHHHHHHHHH
Confidence 3333332 22 3999999997664 6899999998753222 222334567788
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++... .+.++ .+|||||+||++|||||+.+|+++|||||++ ||+.++..+.+.|+++.+.
T Consensus 119 l~~~gL~~~--~~~~~---------~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t 187 (356)
T PRK11650 119 ARILELEPL--LDRKP---------RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTT 187 (356)
T ss_pred HHHcCChhH--hhCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 999998422 22333 6999999999999999999999999999999 9999999999999988654
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|+...+..++|||
T Consensus 188 ii~vTHd~~ea~~l~D~i 205 (356)
T PRK11650 188 SLYVTHDQVEAMTLADRV 205 (356)
T ss_pred EEEEeCCHHHHHHhCCEE
Confidence 346666666667764
No 53
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-38 Score=287.93 Aligned_cols=194 Identities=19% Similarity=0.240 Sum_probs=153.5
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||++.|++. .+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~------ 63 (235)
T cd03261 1 IELRGLTKSFGGR-TV-----LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR-----PDSGEVLIDGED------ 63 (235)
T ss_pred CeEEEEEEEECCE-EE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE------
Confidence 5789999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCCh---HHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-cCC-CChHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDS---SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-MEG-DSDVEKQYNQI 226 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~---~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~~~-~~~~~~~~~~~ 226 (317)
+...+. ..+++. |+|++|++.+++ .+|+.+|+.+... +.. ......+++.+
T Consensus 64 ----------------~~~~~~~~~~~~~~~-------i~~v~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 119 (235)
T cd03261 64 ----------------ISGLSEAELYRLRRR-------MGMLFQSGALFD-SLTVFENVAFPLREHTRLSEEEIREIVLE 119 (235)
T ss_pred ----------------ccccChhhHHHHhcc-------eEEEccCcccCC-CCcHHHHHHHHHhhccCCCHHHHHHHHHH
Confidence 333332 233333 999999987655 5799999987532 111 11223445677
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... +... .+|||||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 120 ~l~~~~l~~~~---~~~~--------~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 188 (235)
T cd03261 120 KLEAVGLRGAE---DLYP--------AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGL 188 (235)
T ss_pred HHHHcCCchhh---cCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCc
Confidence 88888874221 2333 6899999999999999999999999999999 9999999999999998642
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 189 tvi~vsH~~~~~~~~~d~v 207 (235)
T cd03261 189 TSIMVTHDLDTAFAIADRI 207 (235)
T ss_pred EEEEEecCHHHHHHhcCEE
Confidence 446677777777764
No 54
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.5e-38 Score=282.17 Aligned_cols=196 Identities=20% Similarity=0.240 Sum_probs=155.0
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++|+++.|+++..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 ~l~~~~l~~~~~~~~~i-----l~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~----- 65 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAA-----LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT-----PSRGQVRIAGED----- 65 (214)
T ss_pred CEEEEeeeEEeCCCcee-----ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEE-----
Confidence 58999999999533334 999999999999999999999999999999999999 999999999986
Q ss_pred EecccCCCCcccccceeeccCChH---HHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC-ChHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSS---SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD-SDVEKQYNQI 226 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~---~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~-~~~~~~~~~~ 226 (317)
+..++.. .+++. ++|++|++.++. ..|+.+|+.+....... .....+++.+
T Consensus 66 -----------------~~~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~ 120 (214)
T TIGR02673 66 -----------------VNRLRGRQLPLLRRR-------IGVVFQDFRLLP-DRTVYENVALPLEVRGKKEREIQRRVGA 120 (214)
T ss_pred -----------------cccCCHHHHHHHHhh-------eEEEecChhhcc-CCcHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3333322 23333 999999987554 57999999875332211 1223456778
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... .... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 121 ~l~~~~l~~~~---~~~~--------~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~t 189 (214)
T TIGR02673 121 ALRQVGLEHKA---DAFP--------EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTT 189 (214)
T ss_pred HHHHcCChhhh---hCCh--------hhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCE
Confidence 88888874221 2223 6899999999999999999999999999999 9999999999999997542
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|++..+.+.+|++
T Consensus 190 ii~~tH~~~~~~~~~d~i 207 (214)
T TIGR02673 190 VIVATHDLSLVDRVAHRV 207 (214)
T ss_pred EEEEeCCHHHHHHhcCEE
Confidence 457777777777764
No 55
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.7e-38 Score=346.40 Aligned_cols=238 Identities=13% Similarity=0.125 Sum_probs=193.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHcccccccc-------CCCCceEEEeEEEEcCCCC--ccccccCceeeeeEecCCCEE
Q 021147 36 GSRDSWDSLVDQRRRDAVFREVLQSYDQLRT-------RIGSLTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSL 106 (317)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~I~~~nls~~y~~~~--~~~~~~~L~~isl~I~~Ge~v 106 (317)
...+.|..+..++.+..|+.++++.++.... .....|+++||+|+|++.. .+ |+|+||+|++||++
T Consensus 340 ~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~v-----L~~isl~i~~Ge~v 414 (1466)
T PTZ00265 340 IILPNITEYMKSLEATNSLYEIINRKPLVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEI-----YKDLNFTLTEGKTY 414 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccCCCCCcEEEEEEEEEcCCCCCCce-----eccceEEEcCCCEE
Confidence 3456788889999999999999987654321 1113599999999997532 33 99999999999999
Q ss_pred EEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEEC-cccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhh
Q 021147 107 LLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN-SSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAH 185 (317)
Q Consensus 107 aIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~-g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 185 (317)
|||||||||||||+++|+|+|+ |++|+|+++ |.+ +..++...+|++
T Consensus 415 aIvG~SGsGKSTLl~lL~gl~~-----p~~G~I~i~~g~~----------------------i~~~~~~~lr~~------ 461 (1466)
T PTZ00265 415 AFVGESGCGKSTILKLIERLYD-----PTEGDIIINDSHN----------------------LKDINLKWWRSK------ 461 (1466)
T ss_pred EEECCCCCCHHHHHHHHHHhcc-----CCCCeEEEeCCcc----------------------hhhCCHHHHHHh------
Confidence 9999999999999999999999 999999994 565 566777777777
Q ss_pred hccccccccccccchhhHHHHHHhhhccCC--------------------------------------------------
Q 021147 186 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-------------------------------------------------- 215 (317)
Q Consensus 186 ~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-------------------------------------------------- 215 (317)
||||+|++.+|+. ||++|+.++.....
T Consensus 462 -Ig~V~Q~~~LF~~--TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 538 (1466)
T PTZ00265 462 -IGVVSQDPLLFSN--SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMR 538 (1466)
T ss_pred -ccEecccccchhc--cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcc
Confidence 9999999998864 99999998631000
Q ss_pred --CChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHH
Q 021147 216 --DSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENEL 290 (317)
Q Consensus 216 --~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~ 290 (317)
......+++.++++.++++ +..+++|+.+.++++| ..||||||||++||||++++|+++||||||+ ||+.++.
T Consensus 539 ~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g--~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~ 616 (1466)
T PTZ00265 539 KNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNA--SKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEY 616 (1466)
T ss_pred cccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCC--CcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHH
Confidence 0012345688899999985 4468999999999998 8999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHh-------cCCCcchhhcccCCC
Q 021147 291 IIVDMLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 291 ~l~~~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
.+++.|+++.+. ..|+++.+ ..+|+|
T Consensus 617 ~i~~~L~~~~~~~g~TvIiIsHrls~i-~~aD~I 649 (1466)
T PTZ00265 617 LVQKTINNLKGNENRITIIIAHRLSTI-RYANTI 649 (1466)
T ss_pred HHHHHHHHHhhcCCCEEEEEeCCHHHH-HhCCEE
Confidence 999999998531 44566655 356653
No 56
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=3.6e-38 Score=297.86 Aligned_cols=195 Identities=16% Similarity=0.213 Sum_probs=158.3
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++||+++|++. .+ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|+++|.+
T Consensus 6 ~~i~i~~l~k~~~~~-~~-----l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~-----p~~G~v~i~G~~---- 70 (306)
T PRK13537 6 APIDFRNVEKRYGDK-LV-----VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH-----PDAGSISLCGEP---- 70 (306)
T ss_pred ceEEEEeEEEEECCe-EE-----EecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEe----
Confidence 579999999999754 33 999999999999999999999999999999999999 999999999986
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVA 228 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a 228 (317)
+.... ...+++ |||+||++.++ ..+|+++|+.+...... ......+++.+++
T Consensus 71 ------------------~~~~~-~~~~~~-------ig~v~q~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l 123 (306)
T PRK13537 71 ------------------VPSRA-RHARQR-------VGVVPQFDNLD-PDFTVRENLLVFGRYFGLSAAAARALVPPLL 123 (306)
T ss_pred ------------------cccch-HHHHhc-------EEEEeccCcCC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 32222 234444 99999998755 46899999986543222 2223345566788
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++.... +..+ ..||+||+||++|||||+.+|+++||||||+ ||+.++..+.++|+++.+.
T Consensus 124 ~~~~l~~~~---~~~~--------~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til 192 (306)
T PRK13537 124 EFAKLENKA---DAKV--------GELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTIL 192 (306)
T ss_pred HHcCCchHh---cCch--------hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 888874222 3444 7899999999999999999999999999999 9999999999999998643
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
+.|.+..+..+||||
T Consensus 193 l~sH~l~e~~~~~d~i 208 (306)
T PRK13537 193 LTTHFMEEAERLCDRL 208 (306)
T ss_pred EECCCHHHHHHhCCEE
Confidence 567888888888875
No 57
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4e-38 Score=281.26 Aligned_cols=195 Identities=18% Similarity=0.253 Sum_probs=152.9
Q ss_pred EEEeEEEEcCCC-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 73 DAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 73 ~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
+++||+++|++. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 ~~~~l~~~~~~~~~~i-----l~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~------ 64 (211)
T cd03225 1 ELKNLSFSYPDGARPA-----LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG-----PTSGEVLVDGKD------ 64 (211)
T ss_pred CceeEEEecCCCCeee-----ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEE------
Confidence 478999999752 234 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~ 230 (317)
+...+...+++. ++|++|++.......|+.+|+.+...... ......+++.++++.
T Consensus 65 ----------------~~~~~~~~~~~~-------i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 121 (211)
T cd03225 65 ----------------LTKLSLKELRRK-------VGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALEL 121 (211)
T ss_pred ----------------cccCCHHHHHhh-------ceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 333444444544 99999997532335799999986532211 112234456778888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------c
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------A 303 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~ 303 (317)
+++.... .... .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+. .
T Consensus 122 ~~l~~~~---~~~~--------~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~ 190 (211)
T cd03225 122 VGLEGLR---DRSP--------FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIV 190 (211)
T ss_pred cCcHhhh---cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 8874211 2223 6899999999999999999999999999999 9999999999999998653 5
Q ss_pred CCCcchhhcccCCC
Q 021147 304 DRNLSCKSCARNKV 317 (317)
Q Consensus 304 ~~~~~~~~~~~~~~ 317 (317)
.|++..+..++|++
T Consensus 191 sH~~~~~~~~~d~i 204 (211)
T cd03225 191 THDLDLLLELADRV 204 (211)
T ss_pred eCCHHHHHHhCCEE
Confidence 56777777777764
No 58
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-38 Score=302.04 Aligned_cols=195 Identities=14% Similarity=0.135 Sum_probs=158.1
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+++|+++||++.|++. .+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 4 ~~~l~~~~l~~~~~~~-~~-----l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~~~g~~--- 69 (351)
T PRK11432 4 KNFVVLKNITKRFGSN-TV-----IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK-----PTEGQIFIDGED--- 69 (351)
T ss_pred CcEEEEEeEEEEECCe-EE-----EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-----CCceEEEECCEE---
Confidence 5689999999999753 33 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-CCChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~ 227 (317)
+...+. .++ .|||+||++.+|+ .+||++|+.|+.... .......+++.++
T Consensus 70 -------------------i~~~~~--~~r-------~ig~vfQ~~~lfp-~~tv~eNi~~~l~~~~~~~~~~~~~v~~~ 120 (351)
T PRK11432 70 -------------------VTHRSI--QQR-------DICMVFQSYALFP-HMSLGENVGYGLKMLGVPKEERKQRVKEA 120 (351)
T ss_pred -------------------CCCCCH--HHC-------CEEEEeCCcccCC-CCCHHHHHHHHHhHcCCCHHHHHHHHHHH
Confidence 333332 122 3999999997665 589999999875322 2223445677888
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++... .+.++ .+|||||+||++|||||+.+|+++|||||++ ||+.++..+.+.|+++.+.
T Consensus 121 l~~~gl~~~--~~r~~---------~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t 189 (351)
T PRK11432 121 LELVDLAGF--EDRYV---------DQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNIT 189 (351)
T ss_pred HHHcCCchh--hcCCh---------hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 999987422 22344 6999999999999999999999999999999 9999999999999998654
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|+...+..++|||
T Consensus 190 ii~vTHd~~e~~~laD~i 207 (351)
T PRK11432 190 SLYVTHDQSEAFAVSDTV 207 (351)
T ss_pred EEEEcCCHHHHHHhCCEE
Confidence 345666666666764
No 59
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=5.7e-38 Score=281.60 Aligned_cols=198 Identities=15% Similarity=0.201 Sum_probs=152.1
Q ss_pred eEEEeEEEEcCCC---CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 72 TDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 72 I~~~nls~~y~~~---~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|+++||+++|++. ..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~~~~~~i-----l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~--- 67 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQA-----LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR-----PTSGEVRVDGTD--- 67 (218)
T ss_pred CeEeeeEEEecCCCcceeE-----EeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC-----CCceeEEECCEe---
Confidence 5789999999752 234 999999999999999999999999999999999999 999999999976
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC-hHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS-DVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~ 227 (317)
+...+...... ...+.++|++|++.++. .+|+.+|+.+........ ....+++.++
T Consensus 68 -------------------~~~~~~~~~~~---~~~~~i~~~~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 124 (218)
T cd03255 68 -------------------ISKLSEKELAA---FRRRHIGFVFQSFNLLP-DLTALENVELPLLLAGVPKKERRERAEEL 124 (218)
T ss_pred -------------------hhhcchhHHHH---HHhhcEEEEeeccccCC-CCcHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence 33333221110 01123999999987554 579999998754322211 2234567788
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++.... +... .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 125 l~~~~l~~~~---~~~~--------~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~t 193 (218)
T cd03255 125 LERVGLGDRL---NHYP--------SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTT 193 (218)
T ss_pred HHHcCCchhh---hcCh--------hhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCe
Confidence 8888874221 2233 6899999999999999999999999999999 9999999999999998652
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|++..+. .+|+|
T Consensus 194 ii~~sH~~~~~~-~~d~v 210 (218)
T cd03255 194 IVVVTHDPELAE-YADRI 210 (218)
T ss_pred EEEEECCHHHHh-hhcEE
Confidence 456666665 66664
No 60
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-38 Score=290.89 Aligned_cols=197 Identities=19% Similarity=0.294 Sum_probs=156.6
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||++.|++...+ |+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|+++|++
T Consensus 4 ~l~~~~l~~~~~~~~~~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~----- 68 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKA-----LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL-----PQRGRVKVMGRE----- 68 (274)
T ss_pred eEEEEEEEEEeCCCCee-----eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCceEEEECCEE-----
Confidence 79999999999643334 999999999999999999999999999999999999 999999999986
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~ 229 (317)
+...+...+++. |||++|++.......|+.+|+.++..... ......+++.++++
T Consensus 69 -----------------~~~~~~~~~~~~-------i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~ 124 (274)
T PRK13647 69 -----------------VNAENEKWVRSK-------VGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALK 124 (274)
T ss_pred -----------------CCCCCHHHHHhh-------EEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHH
Confidence 434444444444 99999997422234699999987543211 11223455677888
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
.+++... . .... .+|||||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 125 ~~~L~~~--~-~~~~--------~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili 193 (274)
T PRK13647 125 AVRMWDF--R-DKPP--------YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIV 193 (274)
T ss_pred HCCCHHH--h-cCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 8887421 1 2233 6999999999999999999999999999999 9999999999999998642
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+||+
T Consensus 194 ~tH~~~~~~~~~d~i 208 (274)
T PRK13647 194 ATHDVDLAAEWADQV 208 (274)
T ss_pred EeCCHHHHHHhCCEE
Confidence 457777777778774
No 61
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-38 Score=301.48 Aligned_cols=224 Identities=18% Similarity=0.174 Sum_probs=197.3
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHccccccccCC---------CCceEEEeEEEEcCCCCccccccCceeeeeE
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTRI---------GSLTDAKNKILSYTPGAWIENVGGMTLSDYD 99 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~I~~~nls~~y~~~~~~~~~~~L~~isl~ 99 (317)
-++-|..-....++.+.+++...++.++++..+.+....+ .+.+.|+||+|.|....++ |+++||+
T Consensus 211 qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~r~i-----L~~isf~ 285 (497)
T COG5265 211 QLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPI-----LNGISFT 285 (497)
T ss_pred hhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccccccccceEEEEEEEeeccccchh-----hcCcccc
Confidence 4566777778888888888888888888887655443321 2358999999999777665 9999999
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHH
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNR 179 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~ 179 (317)
+++|+.+|+|||||+||||++++|.++|+ +++|.|.+||++ ++......+|+.
T Consensus 286 i~~g~tvAiVg~SG~gKsTI~rllfRFyD-----~~sG~I~id~qd----------------------ir~vtq~slR~a 338 (497)
T COG5265 286 IPLGKTVAIVGESGAGKSTILRLLFRFYD-----VNSGSITIDGQD----------------------IRDVTQQSLRRA 338 (497)
T ss_pred ccCccEEEEEeCCCCcHHHHHHHHHHHhC-----CcCceEEEcchh----------------------HHHhHHHHHHHH
Confidence 99999999999999999999999999999 999999999998 777888888888
Q ss_pred HHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcH
Q 021147 180 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTD 257 (317)
Q Consensus 180 ~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSg 257 (317)
||+|||+..||+. |++.|+.++.+....++ +.++++.+.++ +..+|+||.+.||++| ..|||
T Consensus 339 -------Ig~VPQDtvLFND--ti~yni~ygr~~at~ee-----v~aaa~~aqi~~fi~~lP~gy~t~Vgerg--lklSg 402 (497)
T COG5265 339 -------IGIVPQDTVLFND--TIAYNIKYGRPDATAEE-----VGAAAEAAQIHDFIQSLPEGYDTGVGERG--LKLSG 402 (497)
T ss_pred -------hCcCcccceehhh--hHHHHHhccCccccHHH-----HHHHHHHhhhhHHHHhCchhhhcccchhe--eeccC
Confidence 9999999999976 89999999877665544 78888888885 6678999999999999 89999
Q ss_pred HHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 258 RARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 258 G~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
|||||++|||+++++|++++|||+|| ||..||+.++..|++..
T Consensus 403 gekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~ 446 (497)
T COG5265 403 GEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS 446 (497)
T ss_pred chHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999 99999999999999875
No 62
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-38 Score=291.71 Aligned_cols=196 Identities=17% Similarity=0.185 Sum_probs=158.4
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++|+++.|+.... ++||||+|+.||.+||.||||||||||+|+|+||.. |++|.|.++|+.
T Consensus 2 ~i~i~~~~~~~~~~~a------~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~-----p~~G~I~~~~~~----- 65 (345)
T COG1118 2 SIRINNVKKRFGAFGA------LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET-----PDAGRIRLNGRV----- 65 (345)
T ss_pred ceeehhhhhhcccccc------cccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC-----CCCceEEECCEe-----
Confidence 5899999999976533 999999999999999999999999999999999999 999999999983
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC---CCChHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME---GDSDVEKQYNQIV 227 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~ 227 (317)
+.+......+ -++||+|+|+..+|. .|||++||+|+.... ........++.++
T Consensus 66 -----------------l~D~~~~~~~------~R~VGfvFQ~YALF~-HmtVa~NIAFGl~~~~~~p~~~~~r~rv~el 121 (345)
T COG1118 66 -----------------LFDVSNLAVR------DRKVGFVFQHYALFP-HMTVADNIAFGLKVRKERPSEAEIRARVEEL 121 (345)
T ss_pred -----------------ccchhccchh------hcceeEEEechhhcc-cchHHhhhhhcccccccCCChhhHHHHHHHH
Confidence 1111111111 123999999998665 899999999986432 2223456677788
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+.+. .+.+.|+ .+|||||+||+|+|||++..|++|+||||.. ||..-+..+...|+++...
T Consensus 122 L~lvqL~--~la~ryP---------~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~t 190 (345)
T COG1118 122 LRLVQLE--GLADRYP---------AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVT 190 (345)
T ss_pred HHHhccc--chhhcCc---------hhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCce
Confidence 8888763 2445788 6999999999999999999999999999999 9999999999999998755
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
-.|+...+.+.+|||
T Consensus 191 tvfVTHD~eea~~ladrv 208 (345)
T COG1118 191 TVFVTHDQEEALELADRV 208 (345)
T ss_pred EEEEeCCHHHHHhhcceE
Confidence 456666667777765
No 63
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=6.5e-38 Score=305.55 Aligned_cols=196 Identities=16% Similarity=0.254 Sum_probs=161.3
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++||+++|++. .+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 2 ~~L~~~nls~~y~~~-~v-----L~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~-----p~sG~I~l~G~~---- 66 (402)
T PRK09536 2 PMIDVSDLSVEFGDT-TV-----LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT-----PTAGTVLVAGDD---- 66 (402)
T ss_pred ceEEEeeEEEEECCE-EE-----EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-----CCCcEEEECCEE----
Confidence 579999999999754 34 999999999999999999999999999999999999 999999999986
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-c----CCCChHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-M----EGDSDVEKQYN 224 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~----~~~~~~~~~~~ 224 (317)
+...+...++++ +||++|++.++ +.+|+.+|+.++.. + ........+++
T Consensus 67 ------------------i~~~~~~~~~~~-------ig~v~q~~~l~-~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v 120 (402)
T PRK09536 67 ------------------VEALSARAASRR-------VASVPQDTSLS-FEFDVRQVVEMGRTPHRSRFDTWTETDRAAV 120 (402)
T ss_pred ------------------cCcCCHHHHhcc-------eEEEccCCCCC-CCCCHHHHHHhccchhcccccCCCHHHHHHH
Confidence 444555555555 99999998653 35899999987642 1 11123455677
Q ss_pred HHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 225 QIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 225 ~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
.++++.+++.... +..+ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.++|+++.+.
T Consensus 121 ~~~le~vgl~~~~---~~~~--------~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g 189 (402)
T PRK09536 121 ERAMERTGVAQFA---DRPV--------TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDG 189 (402)
T ss_pred HHHHHHcCCchhh---cCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcC
Confidence 8889999974222 3344 7999999999999999999999999999999 9999999999999998753
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+||+
T Consensus 190 ~TIIivsHdl~~~~~~adri 209 (402)
T PRK09536 190 KTAVAAIHDLDLAARYCDEL 209 (402)
T ss_pred CEEEEEECCHHHHHHhCCEE
Confidence 467778887888874
No 64
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=8.7e-38 Score=282.23 Aligned_cols=195 Identities=19% Similarity=0.213 Sum_probs=153.0
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcc-----cCCCCCCcCcEEEECcccC
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF-----ENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~-----~p~~~~p~~G~I~i~g~~~ 146 (317)
|+++||+++|++. .+ |+|+||+|++||+++|+|+||||||||+++|+|++ + |++|+|.++|++
T Consensus 1 i~~~~l~~~~~~~-~~-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~-----~~~G~i~~~g~~- 68 (227)
T cd03260 1 IELRDLNVYYGDK-HA-----LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA-----PDEGEVLLDGKD- 68 (227)
T ss_pred CEEEEEEEEcCCc-ee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC-----CCCeEEEECCEE-
Confidence 5789999999754 34 99999999999999999999999999999999999 7 999999999976
Q ss_pred ceeeEecccCCCCcccccceeeccCC--hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC-C-hHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSD--SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD-S-DVEKQ 222 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~--~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~-~-~~~~~ 222 (317)
+...+ ...+++. ++|++|++.++ .+|+.+|+.+....... . ....+
T Consensus 69 ---------------------~~~~~~~~~~~~~~-------i~~~~q~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~ 118 (227)
T cd03260 69 ---------------------IYDLDVDVLELRRR-------VGMVFQKPNPF--PGSIYDNVAYGLRLHGIKLKEELDE 118 (227)
T ss_pred ---------------------hhhcchHHHHHHhh-------EEEEecCchhc--cccHHHHHHhHHHhcCCCcHHHHHH
Confidence 33333 2333344 99999998766 57999999875432111 1 12345
Q ss_pred HHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 223 ~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
++.++++.+++.... ...+.. .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 119 ~~~~~l~~~~l~~~~-~~~~~~--------~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 189 (227)
T cd03260 119 RVEEALRKAALWDEV-KDRLHA--------LGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK 189 (227)
T ss_pred HHHHHHHHcCCChHH-hccCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh
Confidence 677888888874221 111102 6899999999999999999999999999999 999999999999999865
Q ss_pred h-----cCCCcchhhcccCCC
Q 021147 302 H-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~-----~~~~~~~~~~~~~~~ 317 (317)
. ..|++..+...+|||
T Consensus 190 ~~tii~~sH~~~~~~~~~d~i 210 (227)
T cd03260 190 EYTIVIVTHNMQQAARVADRT 210 (227)
T ss_pred CcEEEEEeccHHHHHHhCCEE
Confidence 2 456676666677764
No 65
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.5e-37 Score=280.02 Aligned_cols=196 Identities=16% Similarity=0.152 Sum_probs=153.5
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||++.|++...+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 ~l~~~~l~~~~~~~~~~-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~----- 65 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQA-----LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER-----PSAGKIWFSGHD----- 65 (222)
T ss_pred CEEEEeeEEEecCCCeE-----EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE-----
Confidence 58999999999433334 999999999999999999999999999999999999 999999999976
Q ss_pred EecccCCCCcccccceeeccCChHH---HHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSS---LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQI 226 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~ 226 (317)
+...+... +++. ++|++|++.++ ..+|+.+|+.+...... ......+++.+
T Consensus 66 -----------------i~~~~~~~~~~~~~~-------i~~~~q~~~~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~ 120 (222)
T PRK10908 66 -----------------ITRLKNREVPFLRRQ-------IGMIFQDHHLL-MDRTVYDNVAIPLIIAGASGDDIRRRVSA 120 (222)
T ss_pred -----------------cccCChhHHHHHHhh-------eEEEecCcccc-ccccHHHHHHhHHHhcCCCHHHHHHHHHH
Confidence 33333222 3333 99999998644 35799999987532221 11223345667
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... .... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++.+.
T Consensus 121 ~l~~~~l~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 189 (222)
T PRK10908 121 ALDKVGLLDKA---KNFP--------IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVT 189 (222)
T ss_pred HHHHcCChhhh---hCCc--------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCE
Confidence 78888874221 2223 6899999999999999999999999999999 9999999999999988542
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|+...+.+.+|||
T Consensus 190 iii~sH~~~~~~~~~d~i 207 (222)
T PRK10908 190 VLMATHDIGLISRRSYRM 207 (222)
T ss_pred EEEEeCCHHHHHHhCCEE
Confidence 457777777777764
No 66
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.2e-38 Score=280.19 Aligned_cols=192 Identities=15% Similarity=0.148 Sum_probs=151.2
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||++.|++. .+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~-~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~------ 63 (213)
T cd03259 1 LELKGLSKTYGSV-RA-----LDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER-----PDSGEILIDGRD------ 63 (213)
T ss_pred CeeeeeEEEeCCe-ee-----ecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEE------
Confidence 5789999999753 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~ 230 (317)
+...+. .++. ++|+||++.++. .+|+++|+.+...... ......+++.++++.
T Consensus 64 ----------------~~~~~~--~~~~-------i~~v~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 117 (213)
T cd03259 64 ----------------VTGVPP--ERRN-------IGMVFQDYALFP-HLTVAENIAFGLKLRGVPKAEIRARVRELLEL 117 (213)
T ss_pred ----------------cCcCch--hhcc-------EEEEcCchhhcc-CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHH
Confidence 322221 2223 999999987554 5799999987532221 112234456778888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------- 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------- 302 (317)
+++.... +... .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 118 ~~l~~~~---~~~~--------~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~ 186 (213)
T cd03259 118 VGLEGLL---NRYP--------HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIY 186 (213)
T ss_pred cCChhhh---hcCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 8874221 2233 6899999999999999999999999999999 9999999999999998642
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+|+|
T Consensus 187 ~sH~~~~~~~~~d~v 201 (213)
T cd03259 187 VTHDQEEALALADRI 201 (213)
T ss_pred EecCHHHHHHhcCEE
Confidence 446666666777764
No 67
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=9.9e-38 Score=300.17 Aligned_cols=195 Identities=15% Similarity=0.131 Sum_probs=158.2
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+.+|+++||+++|++. .+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 2 ~~~l~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~--- 67 (353)
T TIGR03265 2 SPYLSIDNIRKRFGAF-TA-----LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER-----QTAGTIYQGGRD--- 67 (353)
T ss_pred CcEEEEEEEEEEeCCe-EE-----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-----CCceEEEECCEE---
Confidence 4579999999999754 33 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~ 227 (317)
+...++. ++ .+||+||++.+|+ .+||++|++|+..... ......+++.++
T Consensus 68 -------------------~~~~~~~--~r-------~ig~v~Q~~~lfp-~~tv~eNi~~~~~~~~~~~~~~~~~~~~~ 118 (353)
T TIGR03265 68 -------------------ITRLPPQ--KR-------DYGIVFQSYALFP-NLTVADNIAYGLKNRGMGRAEVAERVAEL 118 (353)
T ss_pred -------------------CCCCCHH--HC-------CEEEEeCCcccCC-CCcHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3333332 22 3999999997775 6899999998753222 223445678889
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++... .+.++ .+|||||+||++|||||+.+|++++||||++ ||+.++..+.+.|+++.+.
T Consensus 119 l~~l~L~~~--~~~~~---------~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~t 187 (353)
T TIGR03265 119 LDLVGLPGS--ERKYP---------GQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVT 187 (353)
T ss_pred HHHcCCCch--hhCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 999998432 22333 6999999999999999999999999999999 9999999999999988653
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|+...+..++|||
T Consensus 188 vi~vTHd~~ea~~l~d~i 205 (353)
T TIGR03265 188 TIMVTHDQEEALSMADRI 205 (353)
T ss_pred EEEEcCCHHHHHHhCCEE
Confidence 446666666666664
No 68
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.6e-37 Score=283.08 Aligned_cols=196 Identities=16% Similarity=0.210 Sum_probs=153.1
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||++.|+.+..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 ~l~~~~l~~~~~~~~~i-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~----- 65 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQA-----LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE-----PSSGSILLEGTD----- 65 (243)
T ss_pred CeEEEeeeeecCCCcce-----eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCccEEEECCEE-----
Confidence 58999999999722334 999999999999999999999999999999999999 999999999976
Q ss_pred EecccCCCCcccccceeeccCChH---HHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC---------CCCh
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSS---SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME---------GDSD 218 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~---~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~---------~~~~ 218 (317)
+...+.. .+++. ++|+||++.+++ .+|+.+|+.+..... ....
T Consensus 66 -----------------~~~~~~~~~~~~~~~-------i~~v~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~ 120 (243)
T TIGR02315 66 -----------------ITKLRGKKLRKLRRR-------IGMIFQHYNLIE-RLTVLENVLHGRLGYKPTWRSLLGRFSE 120 (243)
T ss_pred -----------------hhhCCHHHHHHHHhh-------eEEEcCCCcccc-cccHHHHHhhcccccccchhhhhccccH
Confidence 3333321 23333 999999987554 579999997643110 1112
Q ss_pred HHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHH
Q 021147 219 VEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLR 297 (317)
Q Consensus 219 ~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~ 297 (317)
...+++.++++.+++.... +... ..|||||+||++||||++.+|+++||||||+ ||+.++..+.+.|+
T Consensus 121 ~~~~~~~~~l~~~~l~~~~---~~~~--------~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 189 (243)
T TIGR02315 121 EDKERALSALERVGLADKA---YQRA--------DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLK 189 (243)
T ss_pred HHHHHHHHHHHHcCcHhhh---cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 3345667788888874211 2233 6899999999999999999999999999999 99999999999999
Q ss_pred HHHHh-------cCCCcchhhcccCCC
Q 021147 298 YCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 298 ~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
++.+. ..|++..+...+|+|
T Consensus 190 ~~~~~~~~tiii~tH~~~~~~~~~d~v 216 (243)
T TIGR02315 190 RINKEDGITVIINLHQVDLAKKYADRI 216 (243)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHhcCeE
Confidence 88542 456677776677764
No 69
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.3e-37 Score=279.19 Aligned_cols=195 Identities=14% Similarity=0.185 Sum_probs=153.6
Q ss_pred ceEEEeEEEEcCCCC---ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 71 LTDAKNKILSYTPGA---WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 71 ~I~~~nls~~y~~~~---~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
||+++||+++|++.. .+ |+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 ~l~~~~v~~~~~~~~~~~~i-----l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~-- 68 (218)
T cd03266 1 MITADALTKRFRDVKKTVQA-----VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE-----PDAGFATVDGFD-- 68 (218)
T ss_pred CeEEEEEEEecCCCCcccee-----ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEEECCEE--
Confidence 589999999997541 33 999999999999999999999999999999999999 999999999976
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQI 226 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~ 226 (317)
+.. ....+++. ++|++|++.++. .+|+.+|+.+...... ......+++.+
T Consensus 69 --------------------~~~-~~~~~~~~-------i~~~~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 119 (218)
T cd03266 69 --------------------VVK-EPAEARRR-------LGFVSDSTGLYD-RLTARENLEYFAGLYGLKGDELTARLEE 119 (218)
T ss_pred --------------------ccc-CHHHHHhh-------EEEecCCcccCc-CCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 322 22334444 999999986554 5799999986543221 12233456677
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 120 ~l~~~~l~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~t 188 (218)
T cd03266 120 LADRLGMEELL---DRRV--------GGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKC 188 (218)
T ss_pred HHHHcCCHHHH---hhhh--------hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCE
Confidence 88888874221 2233 7899999999999999999999999999999 9999999999999998542
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+||+
T Consensus 189 ii~~tH~~~~~~~~~d~i 206 (218)
T cd03266 189 ILFSTHIMQEVERLCDRV 206 (218)
T ss_pred EEEEeCCHHHHHHhcCEE
Confidence 455666666666653
No 70
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.7e-37 Score=277.54 Aligned_cols=195 Identities=17% Similarity=0.182 Sum_probs=152.8
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||++.|+++..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 l~~~~l~~~~~~~~~~-----l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~------ 64 (214)
T cd03292 1 IEFINVTKTYPNGTAA-----LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL-----PTSGTIRVNGQD------ 64 (214)
T ss_pred CEEEEEEEEeCCCcee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEE------
Confidence 5789999999654334 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChH---HHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-CCChHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSS---SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQYNQIV 227 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~---~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~ 227 (317)
+...+.. .+++. ++|++|++.+++ .+|+.+|+.+..... .......+++.++
T Consensus 65 ----------------i~~~~~~~~~~~~~~-------i~~v~q~~~~~~-~~t~~~~l~~~~~~~~~~~~~~~~~~~~~ 120 (214)
T cd03292 65 ----------------VSDLRGRAIPYLRRK-------IGVVFQDFRLLP-DRNVYENVAFALEVTGVPPREIRKRVPAA 120 (214)
T ss_pred ----------------cccCCHHHHHHHHHh-------eEEEecCchhcc-CCcHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3333322 23333 999999987554 579999998754221 1122334566778
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++.... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 121 l~~~~l~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~ti 189 (214)
T cd03292 121 LELVGLSHKH---RALP--------AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTV 189 (214)
T ss_pred HHHcCCHHHh---hCCh--------hhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEE
Confidence 8888874221 2223 6899999999999999999999999999999 9999999999999997542
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|+...+.+.+|++
T Consensus 190 iivtH~~~~~~~~~d~i 206 (214)
T cd03292 190 VVATHAKELVDTTRHRV 206 (214)
T ss_pred EEEeCCHHHHHHhCCEE
Confidence 456666666667763
No 71
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-37 Score=282.02 Aligned_cols=195 Identities=17% Similarity=0.186 Sum_probs=152.8
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||++.|+++..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~~~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~------ 64 (241)
T cd03256 1 IEVENLSKTYPNGKKA-----LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE-----PTSGSVLIDGTD------ 64 (241)
T ss_pred CEEeeEEEecCCccEE-----EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEEECCEe------
Confidence 5789999999752334 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCC---hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC---------CCChH
Q 021147 152 LQEYTIPRGVRHGELVIRRSD---SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME---------GDSDV 219 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~---------~~~~~ 219 (317)
+...+ ...+++. ++|+||++.++. .+|+.+|+.+..... .....
T Consensus 65 ----------------~~~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 120 (241)
T cd03256 65 ----------------INKLKGKALRQLRRQ-------IGMIFQQFNLIE-RLSVLENVLSGRLGRRSTWRSLFGLFPKE 120 (241)
T ss_pred ----------------ccccCHhHHHHHHhc-------cEEEcccCcccc-cCcHHHHHHhhhcccchhhhhhcccCcHH
Confidence 33333 2233333 999999987554 579999997643210 11123
Q ss_pred HHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 220 EKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 220 ~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
..+++.++++.+++.... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|++
T Consensus 121 ~~~~~~~~l~~~~l~~~~---~~~~--------~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 189 (241)
T cd03256 121 EKQRALAALERVGLLDKA---YQRA--------DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKR 189 (241)
T ss_pred HHHHHHHHHHHcCChhhh---CCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 345567788888874221 2233 6899999999999999999999999999999 999999999999999
Q ss_pred HHHh-------cCCCcchhhcccCCC
Q 021147 299 CLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 299 l~~~-------~~~~~~~~~~~~~~~ 317 (317)
+.+. ..|++..+...+|+|
T Consensus 190 ~~~~~~~tii~~tH~~~~~~~~~d~v 215 (241)
T cd03256 190 INREEGITVIVSLHQVDLAREYADRI 215 (241)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 8643 456677777777764
No 72
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-37 Score=290.36 Aligned_cols=199 Identities=16% Similarity=0.233 Sum_probs=155.3
Q ss_pred ceEEEeEEEEcCCC----CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccC
Q 021147 71 LTDAKNKILSYTPG----AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 71 ~I~~~nls~~y~~~----~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~ 146 (317)
.|+++||+++|+.. ..+ |+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~-----l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~- 70 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKA-----LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK-----PTSGKIIIDGVD- 70 (287)
T ss_pred EEEEEEEEEECCCCCccccce-----eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEECCEE-
Confidence 38999999999643 123 999999999999999999999999999999999999 999999999986
Q ss_pred ceeeEecccCCCCcccccceeeccCC--hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSD--SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQY 223 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~--~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~ 223 (317)
+...+ ...++++ |||+||++.......||++|+.+...... ......++
T Consensus 71 ---------------------~~~~~~~~~~~~~~-------ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 122 (287)
T PRK13637 71 ---------------------ITDKKVKLSDIRKK-------VGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR 122 (287)
T ss_pred ---------------------CCCcCccHHHHhhc-------eEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHH
Confidence 33222 2234444 99999987432234699999987543222 22233456
Q ss_pred HHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 224 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 224 ~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
+.++++.++++...+. +... .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 123 ~~~~l~~~gL~~~~~~-~~~~--------~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~ 193 (287)
T PRK13637 123 VKRAMNIVGLDYEDYK-DKSP--------FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE 193 (287)
T ss_pred HHHHHHHcCCCchhhc-cCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh
Confidence 7788888887411111 2333 6999999999999999999999999999999 9999999999999998653
Q ss_pred -------cCCCcchhhcccCCC
Q 021147 303 -------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -------~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 194 ~g~tvi~vtHd~~~~~~~~drv 215 (287)
T PRK13637 194 YNMTIILVSHSMEDVAKLADRI 215 (287)
T ss_pred cCCEEEEEeCCHHHHHHhCCEE
Confidence 356677777777774
No 73
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-37 Score=288.42 Aligned_cols=199 Identities=17% Similarity=0.254 Sum_probs=157.1
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|.+|+++||+++|++...+ |+|+||+|++||+++|+|+||||||||+|+|+|+++ |++|+|+++|++
T Consensus 1 ~~~l~~~~l~~~~~~~~~~-----l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~--- 67 (277)
T PRK13652 1 MHLIETRDLCYSYSGSKEA-----LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK-----PTSGSVLIRGEP--- 67 (277)
T ss_pred CceEEEEEEEEEeCCCCce-----eeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEE---
Confidence 3579999999999644334 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~ 227 (317)
+...+...+++. +||++|++..+....|+.+|+.+...... ......+++.++
T Consensus 68 -------------------~~~~~~~~~~~~-------i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 121 (277)
T PRK13652 68 -------------------ITKENIREVRKF-------VGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA 121 (277)
T ss_pred -------------------CCcCCHHHHHhh-------eEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHH
Confidence 333333444444 99999997422224699999986543222 222334556788
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++.... +... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++.+.
T Consensus 122 l~~~~l~~~~---~~~~--------~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~t 190 (277)
T PRK13652 122 LHMLGLEELR---DRVP--------HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMT 190 (277)
T ss_pred HHHCCChhHh---cCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 8888874221 2233 6899999999999999999999999999999 9999999999999988653
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|++..+.+.+|||
T Consensus 191 vli~tH~~~~~~~~~drv 208 (277)
T PRK13652 191 VIFSTHQLDLVPEMADYI 208 (277)
T ss_pred EEEEecCHHHHHHhCCEE
Confidence 456777777777774
No 74
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1e-37 Score=277.84 Aligned_cols=189 Identities=19% Similarity=0.203 Sum_probs=148.2
Q ss_pred EEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEe
Q 021147 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 152 (317)
Q Consensus 73 ~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~ 152 (317)
+++||+++|++...+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 ~~~~l~~~~~~~~~~-----l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~------- 63 (205)
T cd03226 1 RIENISFSYKKGTEI-----LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK-----ESSGSILLNGKP------- 63 (205)
T ss_pred CcccEEEEeCCcCce-----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEE-------
Confidence 468999999752334 999999999999999999999999999999999999 999999999975
Q ss_pred cccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcC
Q 021147 153 QEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFN 232 (317)
Q Consensus 153 Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~ 232 (317)
+.. ...++ .++|++|++.......|+.+|+.+....... ..+++.++++.++
T Consensus 64 ---------------~~~---~~~~~-------~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~l~~~~ 115 (205)
T cd03226 64 ---------------IKA---KERRK-------SIGYVMQDVDYQLFTDSVREELLLGLKELDA---GNEQAETVLKDLD 115 (205)
T ss_pred ---------------hhh---HHhhc-------ceEEEecChhhhhhhccHHHHHhhhhhhcCc---cHHHHHHHHHHcC
Confidence 221 22233 3999999974322346999999875332211 1245778889988
Q ss_pred CCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCC
Q 021147 233 CPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ADR 305 (317)
Q Consensus 233 l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~ 305 (317)
+.... .... .+||+||+||+++|||++.+|+++||||||+ ||+.+++.+.+.|+++.+. ..|
T Consensus 116 l~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH 184 (205)
T cd03226 116 LYALK---ERHP--------LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITH 184 (205)
T ss_pred Cchhc---CCCc--------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 74221 2233 6899999999999999999999999999999 9999999999999988543 456
Q ss_pred CcchhhcccCCC
Q 021147 306 NLSCKSCARNKV 317 (317)
Q Consensus 306 ~~~~~~~~~~~~ 317 (317)
++..+...+|++
T Consensus 185 ~~~~~~~~~d~i 196 (205)
T cd03226 185 DYEFLAKVCDRV 196 (205)
T ss_pred CHHHHHHhCCEE
Confidence 666666667764
No 75
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-37 Score=297.96 Aligned_cols=199 Identities=17% Similarity=0.196 Sum_probs=157.2
Q ss_pred ceEEEeEEEEcCC---CCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 71 LTDAKNKILSYTP---GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 71 ~I~~~nls~~y~~---~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
||+++||+++|+. ...+ |+|+||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 mi~i~~l~~~y~~~~~~~~i-----l~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~-----p~~G~I~~~g~~-- 68 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHA-----LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER-----PTSGRVLVDGQD-- 68 (343)
T ss_pred CEEEEeEEEEeCCCCCceEE-----EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEE--
Confidence 5899999999972 2233 999999999999999999999999999999999999 999999999986
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQI 226 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~ 226 (317)
+..++...++. +.+.|||+||++.+++ .+|+.+|+.+...... ......+++.+
T Consensus 69 --------------------i~~~~~~~~~~----~~~~ig~v~q~~~l~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~ 123 (343)
T PRK11153 69 --------------------LTALSEKELRK----ARRQIGMIFQHFNLLS-SRTVFDNVALPLELAGTPKAEIKARVTE 123 (343)
T ss_pred --------------------CCcCCHHHHHH----HhcCEEEEeCCCccCC-CCcHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 43444332211 1234999999987554 5799999987643222 12233456778
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... +... .+|||||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 124 ~l~~~gL~~~~---~~~~--------~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~ 192 (343)
T PRK11153 124 LLELVGLSDKA---DRYP--------AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGL 192 (343)
T ss_pred HHHHcCCchhh---hCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 88888874221 2233 6899999999999999999999999999999 9999999999999998643
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 193 tiilvtH~~~~i~~~~d~v 211 (343)
T PRK11153 193 TIVLITHEMDVVKRICDRV 211 (343)
T ss_pred EEEEEeCCHHHHHHhCCEE
Confidence 457777777778774
No 76
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.7e-37 Score=297.09 Aligned_cols=196 Identities=19% Similarity=0.201 Sum_probs=157.5
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+.+|+++||+++|++.. + |+||||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+
T Consensus 39 ~~~i~i~nl~k~y~~~~-~-----l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~-----p~~G~i~i~G~~--- 104 (340)
T PRK13536 39 TVAIDLAGVSKSYGDKA-V-----VNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS-----PDAGKITVLGVP--- 104 (340)
T ss_pred ceeEEEEEEEEEECCEE-E-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCceEEEECCEE---
Confidence 34799999999997543 3 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-cCCCChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-MEGDSDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~~~~~~~~~~~~~~~ 227 (317)
+.... ...++. |||+||++.++ ..+|+.+|+.+... +........+++.++
T Consensus 105 -------------------~~~~~-~~~~~~-------ig~v~q~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l 156 (340)
T PRK13536 105 -------------------VPARA-RLARAR-------IGVVPQFDNLD-LEFTVRENLLVFGRYFGMSTREIEAVIPSL 156 (340)
T ss_pred -------------------CCcch-HHHhcc-------EEEEeCCccCC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 32221 233333 99999998654 46899999986443 222222233455677
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.++++... +..+ ..||+||+||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 157 l~~~~L~~~~---~~~~--------~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~ti 225 (340)
T PRK13536 157 LEFARLESKA---DARV--------SDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTI 225 (340)
T ss_pred HHHcCCchhh---CCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 8888874322 3444 7999999999999999999999999999999 9999999999999998643
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
+.|++..+..+||||
T Consensus 226 lisSH~l~e~~~~~d~i 242 (340)
T PRK13536 226 LLTTHFMEEAERLCDRL 242 (340)
T ss_pred EEECCCHHHHHHhCCEE
Confidence 567888888888875
No 77
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=2e-37 Score=278.42 Aligned_cols=194 Identities=16% Similarity=0.210 Sum_probs=153.1
Q ss_pred eEEEeEEEEcCCC-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 72 TDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 72 I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
|+++||++.|++. ..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|+++|.+
T Consensus 1 l~~~~l~~~~~~~~~~i-----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~----- 65 (220)
T cd03263 1 LQIRNLTKTYKKGTKPA-----VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR-----PTSGTAYINGYS----- 65 (220)
T ss_pred CEEEeeEEEeCCCCcee-----ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEe-----
Confidence 5799999999752 334 999999999999999999999999999999999999 999999999976
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~ 229 (317)
+... ...++++ ++|++|++.++. ..|+.+|+.+...... ......+++.++++
T Consensus 66 -----------------~~~~-~~~~~~~-------i~~v~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~ 119 (220)
T cd03263 66 -----------------IRTD-RKAARQS-------LGYCPQFDALFD-ELTVREHLRFYARLKGLPKSEIKEEVELLLR 119 (220)
T ss_pred -----------------cccc-hHHHhhh-------EEEecCcCCccc-cCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2221 1233333 999999986553 5799999987543222 12223456778888
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH-----hc
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE-----HA 303 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~-----~~ 303 (317)
.+++.... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+ ..
T Consensus 120 ~~~l~~~~---~~~~--------~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~ 188 (220)
T cd03263 120 VLGLTDKA---NKRA--------RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILT 188 (220)
T ss_pred HcCCHHHH---hChh--------hhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 88874221 2233 6899999999999999999999999999999 999999999999998764 25
Q ss_pred CCCcchhhcccCCC
Q 021147 304 DRNLSCKSCARNKV 317 (317)
Q Consensus 304 ~~~~~~~~~~~~~~ 317 (317)
.|++..+.+.+|++
T Consensus 189 sH~~~~~~~~~d~i 202 (220)
T cd03263 189 THSMDEAEALCDRI 202 (220)
T ss_pred cCCHHHHHHhcCEE
Confidence 66777777777764
No 78
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-37 Score=279.35 Aligned_cols=199 Identities=18% Similarity=0.184 Sum_probs=154.9
Q ss_pred ceEEEeEEEEcCCCC---ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 71 LTDAKNKILSYTPGA---WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 71 ~I~~~nls~~y~~~~---~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
||+++|++++|++.. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 ~i~~~~l~~~~~~~~~~~~i-----l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~-- 68 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTA-----LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER-----PTSGSVLVDGTD-- 68 (233)
T ss_pred CeEEecceEEccCCCCceee-----eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEE--
Confidence 589999999997541 34 999999999999999999999999999999999999 999999999986
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQI 226 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~ 226 (317)
+...+...... ..+.++|+||++.++. .+|+.+|+.+...... ......+++.+
T Consensus 69 --------------------~~~~~~~~~~~----~~~~i~~~~q~~~~~~-~~t~~e~l~~~~~~~~~~~~~~~~~~~~ 123 (233)
T cd03258 69 --------------------LTLLSGKELRK----ARRRIGMIFQHFNLLS-SRTVFENVALPLEIAGVPKAEIEERVLE 123 (233)
T ss_pred --------------------cccCCHHHHHH----HHhheEEEccCcccCC-CCcHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33333222211 1123999999987654 5799999987532211 12223456778
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.++++... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 124 ~l~~~~l~~~~---~~~~--------~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~ 192 (233)
T cd03258 124 LLELVGLEDKA---DAYP--------AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGL 192 (233)
T ss_pred HHHHCCChhhh---hcCh--------hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCC
Confidence 88888874221 2233 6899999999999999999999999999999 9999999999999988653
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|++
T Consensus 193 tvii~sH~~~~~~~~~d~i 211 (233)
T cd03258 193 TIVLITHEMEVVKRICDRV 211 (233)
T ss_pred EEEEEeCCHHHHHHhCCEE
Confidence 456677777777764
No 79
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.6e-37 Score=281.95 Aligned_cols=195 Identities=17% Similarity=0.244 Sum_probs=152.6
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 l~~~~l~~~~~~~-~~-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~------ 63 (236)
T cd03219 1 LEVRGLTKRFGGL-VA-----LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR-----PTSGSVLFDGED------ 63 (236)
T ss_pred CeeeeeEEEECCE-EE-----ecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCceEEECCEE------
Confidence 5789999999753 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC-----------ChHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD-----------SDVE 220 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~-----------~~~~ 220 (317)
+...+...+.+ ..++|+||++.+++ .+|+.+|+.+....... ....
T Consensus 64 ----------------~~~~~~~~~~~------~~i~~v~q~~~l~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 120 (236)
T cd03219 64 ----------------ITGLPPHEIAR------LGIGRTFQIPRLFP-ELTVLENVMVAAQARTGSGLLLARARREEREA 120 (236)
T ss_pred ----------------CCCCCHHHHHh------cCEEEEeccccccc-CCCHHHHHHHHHhhccccccccccccccHHHH
Confidence 33333322211 23999999987554 57999999875422111 1223
Q ss_pred HHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 221 KQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 221 ~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
.+++.++++.+++.... +... .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++
T Consensus 121 ~~~~~~~l~~~~l~~~~---~~~~--------~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 189 (236)
T cd03219 121 RERAEELLERVGLADLA---DRPA--------GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIREL 189 (236)
T ss_pred HHHHHHHHHHcCccchh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 44567778888874221 2333 7999999999999999999999999999999 9999999999999988
Q ss_pred HHh------cCCCcchhhcccCCC
Q 021147 300 LEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 300 ~~~------~~~~~~~~~~~~~~~ 317 (317)
.+. ..|++..+...+|+|
T Consensus 190 ~~~~~tii~vsH~~~~~~~~~d~i 213 (236)
T cd03219 190 RERGITVLLVEHDMDVVMSLADRV 213 (236)
T ss_pred HHCCCEEEEEecCHHHHHHhCCEE
Confidence 642 456677777777764
No 80
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-37 Score=288.79 Aligned_cols=194 Identities=16% Similarity=0.225 Sum_probs=153.8
Q ss_pred eEEEeEEEEcCCC----CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 72 TDAKNKILSYTPG----AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 72 I~~~nls~~y~~~----~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
|+++||+++|++. ..+ |+||||+|++||+++|+|+||||||||+|+|+|+++ |++|+|.++|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~-----L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~-- 70 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRA-----LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ-----PTSGTVTIGERV-- 70 (290)
T ss_pred EEEEEEEEEECCCCcccccc-----eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEE--
Confidence 8999999999642 223 999999999999999999999999999999999999 999999999986
Q ss_pred eeeEecccCCCCcccccceeecc----CChHHHHHHHHHhhhhccccccccc--cccchhhHHHHHHhhhccCC-CChHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRR----SDSSSLRNRMRCKAHKIGCEPSVIR--KVNFVIFVVDGLAVLKSMEG-DSDVE 220 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~----~~~~~~r~~~~~~~~~ig~v~Q~~~--~~~~~~tv~eni~~~~~~~~-~~~~~ 220 (317)
+.. .....+++. |||+||++. ++ ..||.+|+.++..... .....
T Consensus 71 --------------------i~~~~~~~~~~~~~~~-------ig~v~q~~~~~l~--~~tv~eni~~~~~~~~~~~~~~ 121 (290)
T PRK13634 71 --------------------ITAGKKNKKLKPLRKK-------VGIVFQFPEHQLF--EETVEKDICFGPMNFGVSEEDA 121 (290)
T ss_pred --------------------CccccccchHHHHHhh-------EEEEeeCchhhhh--hhhHHHHHHHHHHHcCCCHHHH
Confidence 321 223334444 999999873 44 4699999987643222 22233
Q ss_pred HHHHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 221 KQYNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 221 ~~~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
.+++.++++.++++ ... +... ..||+||+||++|||||+.+|+++||||||+ ||+.++..+.+.|++
T Consensus 122 ~~~~~~~l~~~gL~~~~~---~~~~--------~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~ 190 (290)
T PRK13634 122 KQKAREMIELVGLPEELL---ARSP--------FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYK 190 (290)
T ss_pred HHHHHHHHHHCCCChhhh---hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 45677888999874 221 2333 6899999999999999999999999999999 999999999999998
Q ss_pred HHHh-------cCCCcchhhcccCCC
Q 021147 299 CLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 299 l~~~-------~~~~~~~~~~~~~~~ 317 (317)
+.+. ..|++..+...+|||
T Consensus 191 l~~~~g~tviiitHd~~~~~~~~drv 216 (290)
T PRK13634 191 LHKEKGLTTVLVTHSMEDAARYADQI 216 (290)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 8643 456667777777774
No 81
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.5e-37 Score=276.34 Aligned_cols=194 Identities=19% Similarity=0.279 Sum_probs=152.2
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||+++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~-~~-----l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~------ 63 (213)
T cd03262 1 IEIKNLHKSFGDF-HV-----LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE-----PDSGTIIIDGLK------ 63 (213)
T ss_pred CEEEEEEEEECCe-Ee-----ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEE------
Confidence 5789999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeec--cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-cCC-CChHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-MEG-DSDVEKQYNQIV 227 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~~~-~~~~~~~~~~~~ 227 (317)
+. ..+...+++. ++|++|++.+++ .+|+.+|+.+... ... ......+++.++
T Consensus 64 ----------------~~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~ 119 (213)
T cd03262 64 ----------------LTDDKKNINELRQK-------VGMVFQQFNLFP-HLTVLENITLAPIKVKGMSKAEAEERALEL 119 (213)
T ss_pred ----------------CCccchhHHHHHhc-------ceEEecccccCC-CCcHHHHHHhHHHHhcCCCHHHHHHHHHHH
Confidence 21 1222233444 999999987554 4799999987532 111 112334556778
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.++++... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 120 l~~~~l~~~~---~~~~--------~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tv 188 (213)
T cd03262 120 LEKVGLADKA---DAYP--------AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTM 188 (213)
T ss_pred HHHcCCHhHh---hhCc--------cccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEE
Confidence 8888874221 2233 6899999999999999999999999999999 9999999999999998652
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+|+|
T Consensus 189 i~~sh~~~~~~~~~d~i 205 (213)
T cd03262 189 VVVTHEMGFAREVADRV 205 (213)
T ss_pred EEEeCCHHHHHHhCCEE
Confidence 456666666667654
No 82
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2.5e-37 Score=275.76 Aligned_cols=189 Identities=16% Similarity=0.181 Sum_probs=150.7
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||+++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~-~~-----l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~------ 63 (208)
T cd03268 1 LKTNDLTKTYGKK-RV-----LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK-----PDSGEITFDGKS------ 63 (208)
T ss_pred CEEEEEEEEECCe-Ee-----EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCCc------
Confidence 5799999999653 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHc
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF 231 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~ 231 (317)
+... ..+++. ++|++|++.++ ..+|+.+|+.+....... ..+++.++++.+
T Consensus 64 ----------------~~~~--~~~~~~-------i~~~~q~~~~~-~~~tv~e~l~~~~~~~~~---~~~~~~~~l~~~ 114 (208)
T cd03268 64 ----------------YQKN--IEALRR-------IGALIEAPGFY-PNLTARENLRLLARLLGI---RKKRIDEVLDVV 114 (208)
T ss_pred ----------------ccch--HHHHhh-------EEEecCCCccC-ccCcHHHHHHHHHHhcCC---cHHHHHHHHHHc
Confidence 3221 223333 99999998654 357999999875432211 234567788888
Q ss_pred CCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cC
Q 021147 232 NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------AD 304 (317)
Q Consensus 232 ~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~ 304 (317)
++.... +... .+||+||+||+++|||++.+|+++||||||+ ||+.+++.+.+.++++.+. ..
T Consensus 115 ~l~~~~---~~~~--------~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~t 183 (208)
T cd03268 115 GLKDSA---KKKV--------KGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISS 183 (208)
T ss_pred CCHHHH---hhhH--------hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 874221 2222 6899999999999999999999999999999 9999999999999987642 55
Q ss_pred CCcchhhcccCCC
Q 021147 305 RNLSCKSCARNKV 317 (317)
Q Consensus 305 ~~~~~~~~~~~~~ 317 (317)
|+...+...+|++
T Consensus 184 H~~~~~~~~~d~v 196 (208)
T cd03268 184 HLLSEIQKVADRI 196 (208)
T ss_pred CCHHHHHHhcCEE
Confidence 6777776677764
No 83
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2.7e-37 Score=291.42 Aligned_cols=195 Identities=18% Similarity=0.188 Sum_probs=154.4
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++||+++|++. .+ |+++||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+
T Consensus 3 ~~i~~~~l~~~~~~~-~~-----l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~---- 67 (303)
T TIGR01288 3 VAIDLVGVSKSYGDK-VV-----VNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS-----PDRGKITVLGEP---- 67 (303)
T ss_pred cEEEEEeEEEEeCCe-EE-----EcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE----
Confidence 369999999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-cCCCChHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-MEGDSDVEKQYNQIVA 228 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~~~~~~~~~~~~~~~a 228 (317)
+... ....++. +||+||++.++ ..+|+.+|+.+... +........+++.+++
T Consensus 68 ------------------~~~~-~~~~~~~-------i~~v~q~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll 120 (303)
T TIGR01288 68 ------------------VPSR-ARLARVA-------IGVVPQFDNLD-PEFTVRENLLVFGRYFGMSTREIEAVIPSLL 120 (303)
T ss_pred ------------------Cccc-HHHHhhc-------EEEEeccccCC-cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2221 2233333 99999998655 35799999975432 2222222334556778
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.++++... +..+ ..|||||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 121 ~~~~l~~~~---~~~~--------~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til 189 (303)
T TIGR01288 121 EFARLESKA---DVRV--------ALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTIL 189 (303)
T ss_pred HHCCChhHh---cCch--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 888864221 2333 6899999999999999999999999999999 9999999999999998542
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 190 ~~sH~~~~~~~~~d~i 205 (303)
T TIGR01288 190 LTTHFMEEAERLCDRL 205 (303)
T ss_pred EECCCHHHHHHhCCEE
Confidence 557777777778874
No 84
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-37 Score=277.78 Aligned_cols=193 Identities=15% Similarity=0.196 Sum_probs=152.4
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++|++++|++. .+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 i~~~~~~~~~~~~-~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~------ 63 (220)
T cd03265 1 IEVENLVKKYGDF-EA-----VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK-----PTSGRATVAGHD------ 63 (220)
T ss_pred CEEEEEEEEECCE-Ee-----eeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEe------
Confidence 5799999999754 34 999999999999999999999999999999999999 999999999975
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~ 230 (317)
+.. ....++++ ++|++|++.++. .+|+++|+.+...... ......+++.++++.
T Consensus 64 ----------------~~~-~~~~~~~~-------i~~~~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 118 (220)
T cd03265 64 ----------------VVR-EPREVRRR-------IGIVFQDLSVDD-ELTGWENLYIHARLYGVPGAERRERIDELLDF 118 (220)
T ss_pred ----------------cCc-ChHHHhhc-------EEEecCCccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 222 12233333 999999987554 5799999987532211 122334567788899
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------- 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------- 302 (317)
+++.... ...+ .+|||||+||+++|||++.+|+++||||||+ ||+.+++.+.+.|+++.+.
T Consensus 119 ~~l~~~~---~~~~--------~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~ 187 (220)
T cd03265 119 VGLLEAA---DRLV--------KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILL 187 (220)
T ss_pred cCCHHHh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 8874221 2333 6999999999999999999999999999999 9999999999999988653
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+||+
T Consensus 188 ~tH~~~~~~~~~d~i 202 (220)
T cd03265 188 TTHYMEEAEQLCDRV 202 (220)
T ss_pred EeCCHHHHHHhCCEE
Confidence 346666666666664
No 85
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-37 Score=286.89 Aligned_cols=200 Identities=17% Similarity=0.213 Sum_probs=156.7
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||+++|+++..+ |+++||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 4 ~~l~~~~l~~~~~~~~~~-----l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~-----p~~G~i~i~g~~~~-- 71 (283)
T PRK13636 4 YILKVEELNYNYSDGTHA-----LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK-----PSSGRILFDGKPID-- 71 (283)
T ss_pred ceEEEEeEEEEeCCCCee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCEECC--
Confidence 479999999999643334 999999999999999999999999999999999999 99999999998611
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVA 228 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a 228 (317)
....+...+++. +||+||++.......|+.+|+.+...... ......+++.+++
T Consensus 72 ------------------~~~~~~~~~~~~-------ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l 126 (283)
T PRK13636 72 ------------------YSRKGLMKLRES-------VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNAL 126 (283)
T ss_pred ------------------CCcchHHHHHhh-------EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHH
Confidence 111223344444 99999987422234699999987543222 1222345677888
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++.... +... .+||+||+||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 127 ~~~gL~~~~---~~~~--------~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~ti 195 (283)
T PRK13636 127 KRTGIEHLK---DKPT--------HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTI 195 (283)
T ss_pred HHCCChhhh---hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 888874221 2333 7999999999999999999999999999999 9999999999999998653
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|++..+.+.+|||
T Consensus 196 llvsH~~~~~~~~~dri 212 (283)
T PRK13636 196 IIATHDIDIVPLYCDNV 212 (283)
T ss_pred EEEecCHHHHHHhCCEE
Confidence 457777777777764
No 86
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-37 Score=298.94 Aligned_cols=194 Identities=16% Similarity=0.175 Sum_probs=155.8
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++||+++|++. .+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 2 ~~l~i~~l~~~~~~~-~v-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~-----p~~G~I~~~g~~---- 66 (369)
T PRK11000 2 ASVTLRNVTKAYGDV-VI-----SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED-----ITSGDLFIGEKR---- 66 (369)
T ss_pred CEEEEEEEEEEeCCe-EE-----EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEE----
Confidence 469999999999754 34 999999999999999999999999999999999999 999999999986
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVA 228 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a 228 (317)
+...+. .++ .|||++|++.+|+ .+||++|+.++..... ......+++.+++
T Consensus 67 ------------------i~~~~~--~~~-------~i~~v~Q~~~l~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l 118 (369)
T PRK11000 67 ------------------MNDVPP--AER-------GVGMVFQSYALYP-HLSVAENMSFGLKLAGAKKEEINQRVNQVA 118 (369)
T ss_pred ------------------CCCCCH--hHC-------CEEEEeCCcccCC-CCCHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence 333332 122 3999999987664 5899999988643222 2223345677889
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++.... +... .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 119 ~~lgL~~~~---~~~~--------~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tv 187 (369)
T PRK11000 119 EVLQLAHLL---DRKP--------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 187 (369)
T ss_pred HHcCChhhh---cCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEE
Confidence 998874221 2223 6999999999999999999999999999999 9999999999999988653
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+|||
T Consensus 188 I~vTHd~~~~~~~~d~i 204 (369)
T PRK11000 188 IYVTHDQVEAMTLADKI 204 (369)
T ss_pred EEEeCCHHHHHHhCCEE
Confidence 456666677777764
No 87
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-37 Score=287.85 Aligned_cols=199 Identities=16% Similarity=0.228 Sum_probs=153.9
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||+|.|+..... ...+|+||||+|++||+++|+|+||||||||+|+|+|+++ |++|+|+++|.+
T Consensus 1 mi~~~~v~~~y~~~~~~-~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~----- 69 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPF-ASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ-----PTEGKVTVGDIV----- 69 (288)
T ss_pred CEEEEEEEEEeCCCCcc-cccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCcEEEECCEE-----
Confidence 58999999999643210 0012999999999999999999999999999999999999 999999999986
Q ss_pred EecccCCCCcccccceeecc----CChHHHHHHHHHhhhhcccccccc--ccccchhhHHHHHHhhhccCCC-ChHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRR----SDSSSLRNRMRCKAHKIGCEPSVI--RKVNFVIFVVDGLAVLKSMEGD-SDVEKQY 223 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~----~~~~~~r~~~~~~~~~ig~v~Q~~--~~~~~~~tv~eni~~~~~~~~~-~~~~~~~ 223 (317)
+.. .....+++. +||++|++ .++. .||.+|+.++...... .....++
T Consensus 70 -----------------i~~~~~~~~~~~~~~~-------ig~v~q~~~~~l~~--~tv~~~l~~~~~~~~~~~~~~~~~ 123 (288)
T PRK13643 70 -----------------VSSTSKQKEIKPVRKK-------VGVVFQFPESQLFE--ETVLKDVAFGPQNFGIPKEKAEKI 123 (288)
T ss_pred -----------------CccccccccHHHHHhh-------EEEEecCcchhccc--chHHHHHHhHHHHcCCCHHHHHHH
Confidence 321 222334444 99999987 4454 5999999886432221 2233455
Q ss_pred HHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 224 NQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 224 ~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
+.++++.+++. ... +... ..|||||+||++|||+|+.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 124 ~~~~l~~~~L~~~~~---~~~~--------~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~ 192 (288)
T PRK13643 124 AAEKLEMVGLADEFW---EKSP--------FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ 192 (288)
T ss_pred HHHHHHHcCCChhhc---cCCc--------ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH
Confidence 67788888873 221 2333 6899999999999999999999999999999 999999999999998764
Q ss_pred h------cCCCcchhhcccCCC
Q 021147 302 H------ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~------~~~~~~~~~~~~~~~ 317 (317)
. ..|++..+...+|||
T Consensus 193 ~g~til~vtHd~~~~~~~~dri 214 (288)
T PRK13643 193 SGQTVVLVTHLMDDVADYADYV 214 (288)
T ss_pred CCCEEEEEecCHHHHHHhCCEE
Confidence 2 456677777777764
No 88
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.5e-37 Score=342.06 Aligned_cols=237 Identities=15% Similarity=0.150 Sum_probs=195.3
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc-------------------------CCCCceEEEeEEEEcCCC
Q 021147 30 LSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT-------------------------RIGSLTDAKNKILSYTPG 84 (317)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~I~~~nls~~y~~~ 84 (317)
+.+++......|..+.....+.+|+.++++.+++... +..+.|+|+||+|+|+..
T Consensus 1151 l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~ 1230 (1490)
T TIGR01271 1151 ILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA 1230 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC
Confidence 3445566667788888889999999999865433210 123469999999999753
Q ss_pred -CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccc
Q 021147 85 -AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRH 163 (317)
Q Consensus 85 -~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~ 163 (317)
..+ |+||||+|++||.+||||+||||||||+++|.|+++ + +|+|++||.+
T Consensus 1231 ~~~v-----L~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-----~-~G~I~IdG~d------------------ 1281 (1490)
T TIGR01271 1231 GRAV-----LQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-----T-EGEIQIDGVS------------------ 1281 (1490)
T ss_pred Ccce-----eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-----C-CcEEEECCEE------------------
Confidence 334 999999999999999999999999999999999986 4 7999999987
Q ss_pred cceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCC
Q 021147 164 GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDD 241 (317)
Q Consensus 164 ~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~ 241 (317)
+..++...+|++ |+|+||+|.+|++ ||++|+.... ....+++.++++.+++. +..+++|
T Consensus 1282 ----i~~i~~~~lR~~-------is~IpQdp~LF~G--TIR~NLdp~~------~~tdeei~~aL~~~~L~~~i~~lp~G 1342 (1490)
T TIGR01271 1282 ----WNSVTLQTWRKA-------FGVIPQKVFIFSG--TFRKNLDPYE------QWSDEEIWKVAEEVGLKSVIEQFPDK 1342 (1490)
T ss_pred ----cccCCHHHHHhc-------eEEEeCCCccCcc--CHHHHhCccc------CCCHHHHHHHHHHCCCHHHHHhCccc
Confidence 778888899988 9999999999976 9999995422 12345689999999984 4557889
Q ss_pred CCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccC
Q 021147 242 KPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARN 315 (317)
Q Consensus 242 ~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~ 315 (317)
+++.++++| ..||||||||++|||||+++|+++||||||+ ||+.++..+++.|++..+. -.|+++.+.+ +|
T Consensus 1343 Ldt~v~e~G--~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-~D 1419 (1490)
T TIGR01271 1343 LDFVLVDGG--YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-CQ 1419 (1490)
T ss_pred cccccccCC--CcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CC
Confidence 999999999 8999999999999999999999999999999 9999999999999986432 3455555544 56
Q ss_pred CC
Q 021147 316 KV 317 (317)
Q Consensus 316 ~~ 317 (317)
||
T Consensus 1420 rI 1421 (1490)
T TIGR01271 1420 QF 1421 (1490)
T ss_pred EE
Confidence 53
No 89
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=2.9e-37 Score=277.54 Aligned_cols=193 Identities=17% Similarity=0.178 Sum_probs=148.7
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||+++|++. .+ |+++||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~------ 63 (222)
T cd03224 1 LEVENLNAGYGKS-QI-----LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP-----PRSGSIRFDGRD------ 63 (222)
T ss_pred CEEeeEEeecCCe-eE-----eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEE------
Confidence 5799999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHH-HHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSL-RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+...+.... ++ .++|+||++.+++ .+|+.+|+.+...... ......++.++++.
T Consensus 64 ----------------~~~~~~~~~~~~-------~i~~~~q~~~~~~-~~t~~~~l~~~~~~~~-~~~~~~~~~~~l~~ 118 (222)
T cd03224 64 ----------------ITGLPPHERARA-------GIGYVPEGRRIFP-ELTVEENLLLGAYARR-RAKRKARLERVYEL 118 (222)
T ss_pred ----------------cCCCCHHHHHhc-------CeEEeccccccCC-CCcHHHHHHHHhhhcC-chhHHHHHHHHHHH
Confidence 333333322 22 3999999987554 5799999987543221 11223334455666
Q ss_pred c-CCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 231 F-NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 231 ~-~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
+ ++.... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 119 ~~~l~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii 187 (222)
T cd03224 119 FPRLKERR---KQLA--------GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILL 187 (222)
T ss_pred HHhhhhhh---hCch--------hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 5 332111 2233 6899999999999999999999999999999 9999999999999988642
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|++..+.+.+|+|
T Consensus 188 ~sH~~~~~~~~~d~i 202 (222)
T cd03224 188 VEQNARFALEIADRA 202 (222)
T ss_pred EeCCHHHHHHhccEE
Confidence 446666666777764
No 90
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=6.7e-37 Score=275.22 Aligned_cols=199 Identities=17% Similarity=0.196 Sum_probs=151.2
Q ss_pred ceEEEeEEEEcCCC---CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 71 LTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 71 ~I~~~nls~~y~~~---~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
+|+++||++.|++. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~-----l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~-- 68 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRV-----LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN-----PTSGEVLFNGQS-- 68 (221)
T ss_pred CEEEEeeeEEccCCCcceEe-----EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEE--
Confidence 47899999999642 233 999999999999999999999999999999999999 999999999976
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC-ChHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD-SDVEKQYNQI 226 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~-~~~~~~~~~~ 226 (317)
+..++....+.. ..+.++|++|++.+++ ..|+++|+.+....... .....+++.+
T Consensus 69 --------------------~~~~~~~~~~~~---~~~~i~~v~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~ 124 (221)
T TIGR02211 69 --------------------LSKLSSNERAKL---RNKKLGFIYQFHHLLP-DFTALENVAMPLLIGKKSVKEAKERAYE 124 (221)
T ss_pred --------------------hhhcCHhHHHHH---HHhcEEEEecccccCC-CCcHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 333333222110 0123999999986554 57999999875322111 1223445677
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.++++... +... ..|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 125 ~l~~~~l~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 193 (221)
T TIGR02211 125 MLEKVGLEHRI---NHRP--------SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNT 193 (221)
T ss_pred HHHHcCChhhh---hCCh--------hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCC
Confidence 88888874221 2233 6899999999999999999999999999999 9999999999999988642
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+.. +|+|
T Consensus 194 tii~~tH~~~~~~~-~d~v 211 (221)
T TIGR02211 194 SFLVVTHDLELAKK-LDRV 211 (221)
T ss_pred EEEEEeCCHHHHhh-cCEE
Confidence 4466665544 4653
No 91
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-37 Score=286.24 Aligned_cols=197 Identities=19% Similarity=0.265 Sum_probs=155.0
Q ss_pred CceEEEeEEEEcCCC--CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 70 SLTDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 70 ~~I~~~nls~~y~~~--~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
.+|+++||+++|++. ..+ |+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|+++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~-- 70 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYT-----LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE-----AESGQIIIDGDL-- 70 (279)
T ss_pred ceEEEEeEEEEcCCCCcCee-----eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEE--
Confidence 379999999999642 223 999999999999999999999999999999999999 999999999986
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQI 226 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~ 226 (317)
+...+...+++. +||++|++..+....||.+|+.+...... ......+++.+
T Consensus 71 --------------------i~~~~~~~~~~~-------i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~ 123 (279)
T PRK13650 71 --------------------LTEENVWDIRHK-------IGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNE 123 (279)
T ss_pred --------------------CCcCcHHHHHhh-------ceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHH
Confidence 433444445544 99999997433335699999987643221 22233456778
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 124 ~l~~~gL~~~~---~~~~--------~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 192 (279)
T PRK13650 124 ALELVGMQDFK---EREP--------ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQM 192 (279)
T ss_pred HHHHCCCHhHh---hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 88998874221 2233 6999999999999999999999999999999 9999999999999998653
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+. .+|||
T Consensus 193 tilivtH~~~~~~-~~dri 210 (279)
T PRK13650 193 TVISITHDLDEVA-LSDRV 210 (279)
T ss_pred EEEEEecCHHHHH-hCCEE
Confidence 346666653 56663
No 92
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=4.6e-37 Score=281.24 Aligned_cols=196 Identities=19% Similarity=0.258 Sum_probs=152.9
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCc-----CcEEEECccc
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-----RAQVTYNSSV 145 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~-----~G~I~i~g~~ 145 (317)
+|+++||+++|++.. + ++|+||+|++||+++|+|+||||||||+++|+|+++ |+ +|+|+++|++
T Consensus 1 ~l~~~~l~~~~~~~~-~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~~~~~~G~i~~~g~~ 69 (247)
T TIGR00972 1 AIEIENLNLFYGEKE-A-----LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND-----LVPGVRIEGKVLFDGQD 69 (247)
T ss_pred CEEEEEEEEEECCee-e-----ecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC-----CCcCCCCceEEEECCEE
Confidence 589999999997543 3 999999999999999999999999999999999999 77 9999999986
Q ss_pred CceeeEecccCCCCcccccceeeccC--ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC--CChHHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVIRRS--DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG--DSDVEK 221 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~--~~~~~~ 221 (317)
+... +...+++. ++|+||++.+++ .|+.+|+.+...... ......
T Consensus 70 ----------------------~~~~~~~~~~~~~~-------i~~v~q~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~ 118 (247)
T TIGR00972 70 ----------------------IYDKKIDVVELRRR-------VGMVFQKPNPFP--MSIYDNIAYGPRLHGIKDKKELD 118 (247)
T ss_pred ----------------------ccccccchHHHHhh-------eEEEecCcccCC--CCHHHHHHhHHHhcCCCCHHHHH
Confidence 3221 22233444 999999987665 799999987542221 112334
Q ss_pred HHHHHHHHHcCCCcc--cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 222 QYNQIVATTFNCPYL--SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 222 ~~~~~~a~~~~l~~~--~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
+++.++++.+++... ... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|++
T Consensus 119 ~~~~~~l~~~~l~~~~~~~~-~~~~--------~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 189 (247)
T TIGR00972 119 EIVEESLKKAALWDEVKDRL-HDSA--------LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQE 189 (247)
T ss_pred HHHHHHHHHcCCCcchhhHh-hCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 556778888887410 111 2223 6899999999999999999999999999999 999999999999998
Q ss_pred HHHh-----cCCCcchhhcccCCC
Q 021147 299 CLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 299 l~~~-----~~~~~~~~~~~~~~~ 317 (317)
+.+. ..|++..+...+|||
T Consensus 190 ~~~~~tiiivsH~~~~~~~~~d~i 213 (247)
T TIGR00972 190 LKKKYTIVIVTHNMQQAARISDRT 213 (247)
T ss_pred HHhcCeEEEEecCHHHHHHhCCEE
Confidence 7642 456666666666664
No 93
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=4.8e-37 Score=281.26 Aligned_cols=196 Identities=17% Similarity=0.225 Sum_probs=153.1
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||+++|++. .+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 2 ~~l~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~---- 66 (250)
T PRK11264 2 SAIEVKNLVKKFHGQ-TV-----LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ-----PEAGTIRVGDIT---- 66 (250)
T ss_pred CcEEEeceEEEECCe-ee-----eccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEE----
Confidence 479999999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCC--------hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-cCC-CChH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSD--------SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-MEG-DSDV 219 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~--------~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~~~-~~~~ 219 (317)
+...+ ...+++. ++|++|++.+++ ..|+.+|+.++.. ... ....
T Consensus 67 ------------------~~~~~~~~~~~~~~~~~~~~-------i~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~ 120 (250)
T PRK11264 67 ------------------IDTARSLSQQKGLIRQLRQH-------VGFVFQNFNLFP-HRTVLENIIEGPVIVKGEPKEE 120 (250)
T ss_pred ------------------ccccccccchhhHHHHhhhh-------EEEEecCcccCC-CCCHHHHHHHHHHHhcCCCHHH
Confidence 22211 1223333 999999987553 4799999986432 111 1122
Q ss_pred HHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 220 EKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 220 ~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
..+++.++++.+++.... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|++
T Consensus 121 ~~~~~~~~l~~~gl~~~~---~~~~--------~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 189 (250)
T PRK11264 121 ATARARELLAKVGLAGKE---TSYP--------RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQ 189 (250)
T ss_pred HHHHHHHHHHHcCCcchh---hCCh--------hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 345566778888874221 2223 6999999999999999999999999999999 999999999999998
Q ss_pred HHHh------cCCCcchhhcccCCC
Q 021147 299 CLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 299 l~~~------~~~~~~~~~~~~~~~ 317 (317)
+.+. ..|++..+...+||+
T Consensus 190 ~~~~~~tvi~~tH~~~~~~~~~d~i 214 (250)
T PRK11264 190 LAQEKRTMVIVTHEMSFARDVADRA 214 (250)
T ss_pred HHhcCCEEEEEeCCHHHHHHhcCEE
Confidence 8642 456666666667764
No 94
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2.1e-37 Score=277.18 Aligned_cols=189 Identities=21% Similarity=0.243 Sum_probs=149.4
Q ss_pred EEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEe
Q 021147 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 152 (317)
Q Consensus 73 ~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~ 152 (317)
+++||+++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 ~~~~l~~~~~~~-~~-----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~------- 62 (213)
T cd03235 1 EVEDLTVSYGGH-PV-----LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK-----PTSGSIRVFGKP------- 62 (213)
T ss_pred CcccceeEECCE-Ee-----eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCcc-------
Confidence 468999999753 34 999999999999999999999999999999999999 999999999975
Q ss_pred cccCCCCcccccceeeccCChHHHHHHHHHhhhhcccccccccccc-chhhHHHHHHhhhccC-----CCChHHHHHHHH
Q 021147 153 QEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN-FVIFVVDGLAVLKSME-----GDSDVEKQYNQI 226 (317)
Q Consensus 153 Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~-~~~tv~eni~~~~~~~-----~~~~~~~~~~~~ 226 (317)
+. .+++. ++|++|++.+.. ...|+.+|+.+..... .......+++.+
T Consensus 63 ---------------~~-----~~~~~-------i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 115 (213)
T cd03235 63 ---------------LE-----KERKR-------IGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDE 115 (213)
T ss_pred ---------------HH-----HHHhh-------eEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHH
Confidence 21 23333 999999986522 2469999998753211 111233456777
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... .... .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 116 ~l~~~~l~~~~---~~~~--------~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 184 (213)
T cd03235 116 ALERVGLSELA---DRQI--------GELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMT 184 (213)
T ss_pred HHHHcCCHHHH---hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCE
Confidence 88888874211 2233 6899999999999999999999999999999 9999999999999998642
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|++
T Consensus 185 vi~~sH~~~~~~~~~d~i 202 (213)
T cd03235 185 ILVVTHDLGLVLEYFDRV 202 (213)
T ss_pred EEEEeCCHHHHHHhcCEE
Confidence 566777777777764
No 95
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=5.9e-37 Score=276.40 Aligned_cols=197 Identities=20% Similarity=0.253 Sum_probs=150.2
Q ss_pred ceEEEeEEEEcCCCC---ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 71 LTDAKNKILSYTPGA---WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 71 ~I~~~nls~~y~~~~---~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
+|+++||+++|++.. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~-- 68 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKA-----LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK-----PTSGSIIFDGKD-- 68 (228)
T ss_pred CeEEEeeeEeccCCCcceee-----ecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEE--
Confidence 589999999996541 34 999999999999999999999999999999999999 999999999976
Q ss_pred eeeEecccCCCCcccccceeeccCCh---HHHHHHHHHhhhhcccccccccc-ccchhhHHHHHHhhhccCC-CCh-HHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDS---SSLRNRMRCKAHKIGCEPSVIRK-VNFVIFVVDGLAVLKSMEG-DSD-VEK 221 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~---~~~r~~~~~~~~~ig~v~Q~~~~-~~~~~tv~eni~~~~~~~~-~~~-~~~ 221 (317)
+...+. ..+++. ++|++|++.. +...+|+.+|+.+...... ... ...
T Consensus 69 --------------------~~~~~~~~~~~~~~~-------i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~ 121 (228)
T cd03257 69 --------------------LLKLSRRLRKIRRKE-------IQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEAR 121 (228)
T ss_pred --------------------ccccchhhHHHhhcc-------EEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHH
Confidence 333332 233333 9999999842 4456899999976432211 111 111
Q ss_pred HHH-HHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 222 QYN-QIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 222 ~~~-~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
+++ .++++.+++. ... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|++
T Consensus 122 ~~~~~~~l~~~~l~~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 190 (228)
T cd03257 122 KEAVLLLLVGVGLPEEVL---NRYP--------HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK 190 (228)
T ss_pred HHHHHHHHHHCCCChhHh---hCCc--------hhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 222 3667777763 111 2233 6899999999999999999999999999999 999999999999998
Q ss_pred HHHh-------cCCCcchhhcccCCC
Q 021147 299 CLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 299 l~~~-------~~~~~~~~~~~~~~~ 317 (317)
+.+. ..|+...+...+|+|
T Consensus 191 ~~~~~~~tii~~sH~~~~~~~~~d~i 216 (228)
T cd03257 191 LQEELGLTLLFITHDLGVVAKIADRV 216 (228)
T ss_pred HHHHcCCEEEEEeCCHHHHHHhcCeE
Confidence 8652 456666666666764
No 96
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=3.6e-37 Score=296.27 Aligned_cols=193 Identities=18% Similarity=0.224 Sum_probs=156.3
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||+++|++. .+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 2 ~L~i~~l~~~~~~~-~~-----l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~i~g~~----- 65 (353)
T PRK10851 2 SIEIANIKKSFGRT-QV-----LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH-----QTSGHIRFHGTD----- 65 (353)
T ss_pred EEEEEEEEEEeCCe-EE-----EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEE-----
Confidence 48999999999754 33 999999999999999999999999999999999999 999999999986
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC----C-CChHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME----G-DSDVEKQYNQ 225 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~----~-~~~~~~~~~~ 225 (317)
+...+. .++ .+||+||++.+|+ .+||.+|+.++.... . ......+++.
T Consensus 66 -----------------i~~~~~--~~r-------~i~~v~Q~~~l~p-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~ 118 (353)
T PRK10851 66 -----------------VSRLHA--RDR-------KVGFVFQHYALFR-HMTVFDNIAFGLTVLPRRERPNAAAIKAKVT 118 (353)
T ss_pred -----------------CCCCCH--HHC-------CEEEEecCcccCC-CCcHHHHHHhhhhhcccccCCCHHHHHHHHH
Confidence 333322 122 3999999987664 589999999864321 1 1123455677
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++++.++++.. .+.++ .+|||||+||++|||||+.+|+++|||||++ ||+.++..+.+.|+++.+.
T Consensus 119 ~~l~~~~L~~~--~~~~~---------~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g 187 (353)
T PRK10851 119 QLLEMVQLAHL--ADRYP---------AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELK 187 (353)
T ss_pred HHHHHcCCchh--hhCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 88999987422 22333 6999999999999999999999999999999 9999999999999998653
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|||
T Consensus 188 ~tii~vTHd~~ea~~~~Dri 207 (353)
T PRK10851 188 FTSVFVTHDQEEAMEVADRV 207 (353)
T ss_pred CEEEEEeCCHHHHHHhCCEE
Confidence 557777777777764
No 97
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-37 Score=275.21 Aligned_cols=192 Identities=20% Similarity=0.212 Sum_probs=150.7
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||++.|++. .+ |+|+||+|++| +++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 i~~~~~~~~~~~~-~~-----l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~------ 62 (211)
T cd03264 1 LQLENLTKRYGKK-RA-----LDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP-----PSSGTIRIDGQD------ 62 (211)
T ss_pred CEEEEEEEEECCE-EE-----EcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCCc------
Confidence 5799999999654 34 99999999999 999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~ 230 (317)
+...+ ..+++. ++|++|++.++. .+|+.+|+.+...... ......+++.++++.
T Consensus 63 ----------------~~~~~-~~~~~~-------i~~~~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 117 (211)
T cd03264 63 ----------------VLKQP-QKLRRR-------IGYLPQEFGVYP-NFTVREFLDYIAWLKGIPSKEVKARVDEVLEL 117 (211)
T ss_pred ----------------cccch-HHHHhh-------eEEecCCCcccc-cCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 33333 334444 999999987654 4799999986432211 112234556778888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cC
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----AD 304 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~ 304 (317)
+++.... +..+ .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+. ..
T Consensus 118 ~~l~~~~---~~~~--------~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vs 186 (211)
T cd03264 118 VNLGDRA---KKKI--------GSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILST 186 (211)
T ss_pred CCCHHHH---hCch--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 8874221 2233 6899999999999999999999999999999 9999999999999988532 45
Q ss_pred CCcchhhcccCCC
Q 021147 305 RNLSCKSCARNKV 317 (317)
Q Consensus 305 ~~~~~~~~~~~~~ 317 (317)
|++..+...+||+
T Consensus 187 H~~~~~~~~~d~i 199 (211)
T cd03264 187 HIVEDVESLCNQV 199 (211)
T ss_pred CCHHHHHHhCCEE
Confidence 5666666666653
No 98
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-37 Score=281.00 Aligned_cols=193 Identities=16% Similarity=0.181 Sum_probs=150.8
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||++.|++. .+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 2 ~l~~~~l~~~~~~~-~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~----- 65 (239)
T cd03296 2 SIEVRNVSKRFGDF-VA-----LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER-----PDSGTILFGGED----- 65 (239)
T ss_pred EEEEEeEEEEECCE-Ee-----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE-----
Confidence 48999999999753 34 999999999999999999999999999999999999 999999999976
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-----CChHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-----DSDVEKQYNQ 225 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-----~~~~~~~~~~ 225 (317)
+...+. .++ .++|++|++.++. ..|+.+|+.+...... ......+++.
T Consensus 66 -----------------~~~~~~--~~~-------~i~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 118 (239)
T cd03296 66 -----------------ATDVPV--QER-------NVGFVFQHYALFR-HMTVFDNVAFGLRVKPRSERPPEAEIRAKVH 118 (239)
T ss_pred -----------------CCcCCc--ccc-------ceEEEecCCcccC-CCCHHHHHhhhhhhccccccCCHHHHHHHHH
Confidence 222221 122 3999999987553 5799999987532211 1122234566
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++++.+++.... +..+ .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 119 ~~l~~~~l~~~~---~~~~--------~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~ 187 (239)
T cd03296 119 ELLKLVQLDWLA---DRYP--------AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELH 187 (239)
T ss_pred HHHHHcCChhhh---hcCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 778888874211 2233 6899999999999999999999999999999 9999999999999988642
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|+|
T Consensus 188 ~tvii~sH~~~~~~~~~d~i 207 (239)
T cd03296 188 VTTVFVTHDQEEALEVADRV 207 (239)
T ss_pred CEEEEEeCCHHHHHHhCCEE
Confidence 445666666666664
No 99
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-37 Score=277.41 Aligned_cols=185 Identities=15% Similarity=0.177 Sum_probs=145.8
Q ss_pred CceEEEeEEEEcCCC---CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccC
Q 021147 70 SLTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 70 ~~I~~~nls~~y~~~---~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~ 146 (317)
++|+++||++.|+++ ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|++
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~i-----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~- 72 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDV-----LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT-----PTSGDVIFNGQP- 72 (233)
T ss_pred ceEEEEeEEEEcCCCCcceee-----EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEE-
Confidence 579999999999643 233 999999999999999999999999999999999999 999999999986
Q ss_pred ceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQ 225 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~ 225 (317)
+...+....... ..+.++|++|++.+++ .+|+.+|+.+...... ......+++.
T Consensus 73 ---------------------i~~~~~~~~~~~---~~~~i~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~ 127 (233)
T PRK11629 73 ---------------------MSKLSSAAKAEL---RNQKLGFIYQFHHLLP-DFTALENVAMPLLIGKKKPAEINSRAL 127 (233)
T ss_pred ---------------------cCcCCHHHHHHH---HhccEEEEecCcccCC-CCCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 434443322110 0123999999986554 5799999987532211 1223345677
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
++++.+++.... +... .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 128 ~~l~~~gl~~~~---~~~~--------~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 193 (233)
T PRK11629 128 EMLAAVGLEHRA---NHRP--------SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNR 193 (233)
T ss_pred HHHHHcCCchhh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 888988874221 2223 6899999999999999999999999999999 999999999999998854
No 100
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7e-37 Score=279.20 Aligned_cols=197 Identities=18% Similarity=0.257 Sum_probs=153.8
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||+++|++...+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~~~~-----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~------ 64 (242)
T cd03295 1 IEFENVTKRYGGGKKA-----VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE-----PTSGEIFIDGED------ 64 (242)
T ss_pred CEEEEEEEEeCCcceE-----eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCeE------
Confidence 5789999999752234 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~ 230 (317)
+...+...+++. ++|+||++.+++ .+|+.+|+.+...... ......+++.++++.
T Consensus 65 ----------------~~~~~~~~~~~~-------i~~~~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 120 (242)
T cd03295 65 ----------------IREQDPVELRRK-------IGYVIQQIGLFP-HMTVEENIALVPKLLKWPKEKIRERADELLAL 120 (242)
T ss_pred ----------------cCcCChHHhhcc-------eEEEccCccccC-CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 333444344444 999999987554 4799999987543222 112334567788888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------- 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------- 302 (317)
+++...... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 121 l~l~~~~~~-~~~~--------~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii 191 (242)
T cd03295 121 VGLDPAEFA-DRYP--------HELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVF 191 (242)
T ss_pred cCCCcHHHH-hcCh--------hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 887420011 2222 6899999999999999999999999999999 9999999999999998653
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|+|
T Consensus 192 ~sH~~~~~~~~~d~i 206 (242)
T cd03295 192 VTHDIDEAFRLADRI 206 (242)
T ss_pred EecCHHHHHHhCCEE
Confidence 345666666666664
No 101
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=4.6e-37 Score=297.49 Aligned_cols=196 Identities=13% Similarity=0.149 Sum_probs=156.6
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
.+++|+++||++.|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 11 ~~~~L~l~~l~~~~~~~~-~-----l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~-----p~~G~I~~~g~~-- 77 (375)
T PRK09452 11 LSPLVELRGISKSFDGKE-V-----ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET-----PDSGRIMLDGQD-- 77 (375)
T ss_pred CCceEEEEEEEEEECCeE-E-----EeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEE--
Confidence 345799999999997543 3 999999999999999999999999999999999999 999999999986
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC-hHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS-DVEKQYNQI 226 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~-~~~~~~~~~ 226 (317)
+...++. ++ .+||+||++.+|+ .+||++|++|+....... ....+++.+
T Consensus 78 --------------------i~~~~~~--~r-------~ig~vfQ~~~lfp-~ltv~eNi~~~l~~~~~~~~~~~~~~~~ 127 (375)
T PRK09452 78 --------------------ITHVPAE--NR-------HVNTVFQSYALFP-HMTVFENVAFGLRMQKTPAAEITPRVME 127 (375)
T ss_pred --------------------CCCCCHH--HC-------CEEEEecCcccCC-CCCHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 3333332 22 3999999987665 689999999875322222 233456778
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.. +.+.++ .+|||||+||++|||||+.+|+++|||||++ ||+.++..+.+.|+++.+.
T Consensus 128 ~l~~~~l~~--~~~~~p---------~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~ 196 (375)
T PRK09452 128 ALRMVQLEE--FAQRKP---------HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGI 196 (375)
T ss_pred HHHHcCCch--hhhCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCC
Confidence 889888742 222344 6999999999999999999999999999999 9999999999999998654
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|+...+..++|||
T Consensus 197 tiI~vTHd~~ea~~laDri 215 (375)
T PRK09452 197 TFVFVTHDQEEALTMSDRI 215 (375)
T ss_pred EEEEEeCCHHHHHHhCCEE
Confidence 345555555556653
No 102
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=9.2e-37 Score=308.88 Aligned_cols=214 Identities=12% Similarity=0.115 Sum_probs=172.0
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHHHHHHHccccccc--c----CCCCceEEEeEEEEcCCCCccccccCceeeeeEecCC
Q 021147 30 LSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLR--T----RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKT 103 (317)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~G 103 (317)
+.+|.......|..+..++.+.+|+.+++..+++.. . ...+.|+++||+|+|++...+ |+|+||+|++|
T Consensus 275 ~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~-----l~~i~~~i~~G 349 (547)
T PRK10522 275 LRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFPRPQAFPDWQTLELRNVTFAYQDNGFS-----VGPINLTIKRG 349 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCcCceEEEEEEEEEeCCCCeE-----EecceEEEcCC
Confidence 446888888999999999999999999875432211 1 112369999999999754444 99999999999
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHh
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCK 183 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~ 183 (317)
+.+||+||||||||||+++|+|+++ |++|+|++||++ +.+.+...++++
T Consensus 350 ~~~aivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~----------------------~~~~~~~~~~~~---- 398 (547)
T PRK10522 350 ELLFLIGGNGSGKSTLAMLLTGLYQ-----PQSGEILLDGKP----------------------VTAEQPEDYRKL---- 398 (547)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEE----------------------CCCCCHHHHhhh----
Confidence 9999999999999999999999999 999999999987 667787788877
Q ss_pred hhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcc-cCCCCCCEEEEeccchhcCcHHHHHh
Q 021147 184 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYL-SFRDDKPVVVVTHGDLLSLTDRARIR 262 (317)
Q Consensus 184 ~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~l~~~~~~~i~~hg~~~~LSgG~~qR 262 (317)
|+|++|++.+|+. |+++| . .....+++.++++.+++... ..+++. .+| ..||||||||
T Consensus 399 ---i~~v~q~~~lf~~--ti~~n---~------~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~G--~~LSgGq~qR 457 (547)
T PRK10522 399 ---FSAVFTDFHLFDQ--LLGPE---G------KPANPALVEKWLERLKMAHKLELEDGR-----ISN--LKLSKGQKKR 457 (547)
T ss_pred ---eEEEecChhHHHH--hhccc---c------CchHHHHHHHHHHHcCCchhhhccccC-----CCC--CCCCHHHHHH
Confidence 9999999988865 77777 1 11233456778888776311 111111 024 6899999999
Q ss_pred hcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 263 TYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 263 l~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+++|||++++|+++||||||+ ||+.+++.+.+.+.+..
T Consensus 458 l~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~ 496 (547)
T PRK10522 458 LALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLL 496 (547)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999 99999999999887654
No 103
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-37 Score=284.17 Aligned_cols=198 Identities=14% Similarity=0.198 Sum_probs=152.8
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||+++|++. .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|++..
T Consensus 1 ml~~~~l~~~~~~~-~i-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~--- 66 (271)
T PRK13638 1 MLATSDLWFRYQDE-PV-----LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR-----PQKGAVLWQGKPLD--- 66 (271)
T ss_pred CeEEEEEEEEcCCc-cc-----ccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCccEEEECCEEcc---
Confidence 58999999999754 34 999999999999999999999999999999999999 99999999998610
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~ 229 (317)
....+...+++. ++|++|++..+....++.+|+.+...... ......+++.++++
T Consensus 67 -----------------~~~~~~~~~~~~-------i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 122 (271)
T PRK13638 67 -----------------YSKRGLLALRQQ-------VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALT 122 (271)
T ss_pred -----------------cccCCHHHHHhh-------eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 112222334444 99999997643334578899976432211 12222345667788
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
.+++.... +... .+|||||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 123 ~~~l~~~~---~~~~--------~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~ 191 (271)
T PRK13638 123 LVDAQHFR---HQPI--------QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVII 191 (271)
T ss_pred HcCCHhHh---cCCc--------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 88873221 2333 6999999999999999999999999999999 9999999999999998642
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|++
T Consensus 192 vtH~~~~~~~~~d~i 206 (271)
T PRK13638 192 SSHDIDLIYEISDAV 206 (271)
T ss_pred EeCCHHHHHHhCCEE
Confidence 456677776777764
No 104
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-37 Score=285.07 Aligned_cols=196 Identities=16% Similarity=0.160 Sum_probs=151.9
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||+++|++...+ |+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|.+
T Consensus 1 ml~~~~l~~~~~~~~~~-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~----- 65 (274)
T PRK13644 1 MIRLENVSYSYPDGTPA-----LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR-----PQKGKVLVSGID----- 65 (274)
T ss_pred CEEEEEEEEEcCCCCce-----eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEE-----
Confidence 58999999999643334 999999999999999999999999999999999999 999999999976
Q ss_pred EecccCCCCcccccceeeccCC-hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSD-SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVA 228 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a 228 (317)
+...+ ...+++. +||++|++.......|+.+|+.+...... ......+++.+++
T Consensus 66 -----------------~~~~~~~~~~~~~-------i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l 121 (274)
T PRK13644 66 -----------------TGDFSKLQGIRKL-------VGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRAL 121 (274)
T ss_pred -----------------CCccccHHHHHhh-------eEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHH
Confidence 33332 2334444 99999997532334699999987543221 1122345567778
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++.... +... ..||+||+||++||||++.+|+++||||||+ ||+.++..+.+.++++.+.
T Consensus 122 ~~~gl~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til 190 (274)
T PRK13644 122 AEIGLEKYR---HRSP--------KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIV 190 (274)
T ss_pred HHCCCHHHh---cCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 888874221 2233 6899999999999999999999999999999 9999999999999987642
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+. .+|||
T Consensus 191 ~~tH~~~~~~-~~d~v 205 (274)
T PRK13644 191 YITHNLEELH-DADRI 205 (274)
T ss_pred EEecCHHHHh-hCCEE
Confidence 445666654 36654
No 105
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-37 Score=290.18 Aligned_cols=217 Identities=15% Similarity=0.185 Sum_probs=153.5
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++||+|+|++.... ...+|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|+++|.+..-
T Consensus 19 ~~~l~~~nl~~~y~~~~~~-~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~-----p~~G~I~i~g~~~~~ 92 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQEN-ELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK-----SKYGTIQVGDIYIGD 92 (320)
T ss_pred CceEEEEeEEEEeCCCCcc-cccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCEEccc
Confidence 4589999999999643100 0012999999999999999999999999999999999999 999999999976210
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc--cccchhhHHHHHHhhhccCC-CChHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR--KVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQ 225 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~--~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~ 225 (317)
.+.-++ ++... ..........+++. |||++|++. +|. .|+.+|+.++..... ......+++.
T Consensus 93 ~~~~~~--~~~~~----~~~~~~~~~~~~~~-------ig~v~Q~~~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~ 157 (320)
T PRK13631 93 KKNNHE--LITNP----YSKKIKNFKELRRR-------VSMVFQFPEYQLFK--DTIEKDIMFGPVALGVKKSEAKKLAK 157 (320)
T ss_pred cccccc--ccccc----cccccchHHHHHhc-------EEEEEECchhcccc--chHHHHHHhhHHhcCCCHHHHHHHHH
Confidence 000000 00000 00000112233443 999999873 454 499999987643222 1223345667
Q ss_pred HHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 226 IVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 226 ~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
++++.++++ ... +... .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.+.|.++.+.
T Consensus 158 ~~l~~~gL~~~~~---~~~~--------~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g 226 (320)
T PRK13631 158 FYLNKMGLDDSYL---ERSP--------FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANN 226 (320)
T ss_pred HHHHHcCCChhHh---cCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCC
Confidence 788888874 111 2222 6899999999999999999999999999999 9999999999999987542
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 227 ~TiiivtHd~~~~~~~adri 246 (320)
T PRK13631 227 KTVFVITHTMEHVLEVADEV 246 (320)
T ss_pred CEEEEEecCHHHHHHhCCEE
Confidence 456666666667764
No 106
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=5.6e-37 Score=277.64 Aligned_cols=195 Identities=17% Similarity=0.216 Sum_probs=151.1
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||++.|++. .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~------ 63 (232)
T cd03218 1 LRAENLSKRYGKR-KV-----VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK-----PDSGKILLDGQD------ 63 (232)
T ss_pred CeEEEEEEEeCCE-Ee-----eccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEe------
Confidence 5789999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC-hHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS-DVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~a~~ 230 (317)
+...+.....+ ..++|++|++.+++ .+|+.+|+.+........ ....+++.++++.
T Consensus 64 ----------------~~~~~~~~~~~------~~i~~~~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 120 (232)
T cd03218 64 ----------------ITKLPMHKRAR------LGIGYLPQEASIFR-KLTVEENILAVLEIRGLSKKEREEKLEELLEE 120 (232)
T ss_pred ----------------cccCCHhHHHh------ccEEEecCCccccc-cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 33333322211 13999999987554 579999998754222111 2233456678888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------c
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------A 303 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~ 303 (317)
+++.... +... ..||+||+||+++|||++.+|+++||||||+ ||+.+++.+.+.|+++.+. .
T Consensus 121 ~~l~~~~---~~~~--------~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~ 189 (232)
T cd03218 121 FHITHLR---KSKA--------SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLIT 189 (232)
T ss_pred cCChhhh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 8874211 2333 6899999999999999999999999999999 9999999999999987642 3
Q ss_pred CCCcchhhcccCCC
Q 021147 304 DRNLSCKSCARNKV 317 (317)
Q Consensus 304 ~~~~~~~~~~~~~~ 317 (317)
.|+...+.+.+|+|
T Consensus 190 sH~~~~~~~~~d~i 203 (232)
T cd03218 190 DHNVRETLSITDRA 203 (232)
T ss_pred eCCHHHHHHhCCEE
Confidence 45555666666653
No 107
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=5.9e-37 Score=284.34 Aligned_cols=200 Identities=14% Similarity=0.152 Sum_probs=153.9
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+.+|+++||++.|++. .+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|+++|++
T Consensus 5 ~~~l~~~~l~~~~~~~-~i-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~--- 70 (269)
T PRK11831 5 ANLVDMRGVSFTRGNR-CI-----FDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA-----PDHGEILFDGEN--- 70 (269)
T ss_pred cceEEEeCeEEEECCE-EE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEE---
Confidence 4589999999999654 34 999999999999999999999999999999999999 999999999976
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC--CCChHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME--GDSDVEKQYNQI 226 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~--~~~~~~~~~~~~ 226 (317)
+...+...... +.+.++|++|++.+++ .+|+.+|+.+..... ........++.+
T Consensus 71 -------------------i~~~~~~~~~~----~~~~i~~v~q~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~ 126 (269)
T PRK11831 71 -------------------IPAMSRSRLYT----VRKRMSMLFQSGALFT-DMNVFDNVAYPLREHTQLPAPLLHSTVMM 126 (269)
T ss_pred -------------------ccccChhhHHH----HhhcEEEEecccccCC-CCCHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 33333222111 1123999999987654 579999998653211 111223345667
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... .... .+|||||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 127 ~l~~~gl~~~~---~~~~--------~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~ 195 (269)
T PRK11831 127 KLEAVGLRGAA---KLMP--------SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGV 195 (269)
T ss_pred HHHHcCChhhh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCc
Confidence 78888874221 2233 6999999999999999999999999999999 9999999999999998643
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|+|
T Consensus 196 tiiivsH~~~~~~~~~d~v 214 (269)
T PRK11831 196 TCVVVSHDVPEVLSIADHA 214 (269)
T ss_pred EEEEEecCHHHHHHhhCEE
Confidence 346666666666664
No 108
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.2e-36 Score=308.48 Aligned_cols=213 Identities=10% Similarity=0.074 Sum_probs=175.6
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcc---cccc---cc----------CCCCceEEEeEEEEcCCC----Cccc
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQS---YDQL---RT----------RIGSLTDAKNKILSYTPG----AWIE 88 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~----------~~~~~I~~~nls~~y~~~----~~~~ 88 (317)
.+.+|.......|..+..++.+.+|+.++++. ++.. .. .....|+++||+|+|++. ..+
T Consensus 279 ~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~- 357 (555)
T TIGR01194 279 YIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFA- 357 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCce-
Confidence 45678888889999999999999999999752 1111 10 012369999999999753 124
Q ss_pred cccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceee
Q 021147 89 NVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVI 168 (317)
Q Consensus 89 ~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~ 168 (317)
|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+ +
T Consensus 358 ----l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----p~~G~i~~~g~~----------------------i 406 (555)
T TIGR01194 358 ----LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI-----PQEGEILLDGAA----------------------V 406 (555)
T ss_pred ----eccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEE----------------------C
Confidence 999999999999999999999999999999999999 999999999987 6
Q ss_pred ccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEE
Q 021147 169 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVV 246 (317)
Q Consensus 169 ~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i 246 (317)
+.++...+++. +++++|++.+|+. |+++|.. .....+++.++++.++++ ...+|+|+++.
T Consensus 407 ~~~~~~~~~~~-------i~~v~q~~~lf~~--ti~~n~~--------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~- 468 (555)
T TIGR01194 407 SADSRDDYRDL-------FSAIFADFHLFDD--LIGPDEG--------EHASLDNAQQYLQRLEIADKVKIEDGGFSTT- 468 (555)
T ss_pred CCCCHHHHHhh-------CcEEccChhhhhh--hhhcccc--------cchhHHHHHHHHHHcCCchhhcccccccCCc-
Confidence 67777778777 9999999988865 7888741 122345578899999985 34567787761
Q ss_pred EeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHH
Q 021147 247 VTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLR 297 (317)
Q Consensus 247 ~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~ 297 (317)
..||||||||++||||++++|+++||||||+ ||+.+++.+.+.+.
T Consensus 469 ------~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~ 514 (555)
T TIGR01194 469 ------TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELL 514 (555)
T ss_pred ------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 5899999999999999999999999999999 99999999988654
No 109
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-37 Score=279.02 Aligned_cols=192 Identities=17% Similarity=0.194 Sum_probs=153.8
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++||+++|++. .+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 2 ~~l~~~~l~~~~~~~-~~-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~---- 66 (241)
T PRK14250 2 NEIEFKEVSYSSFGK-EI-----LKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID-----PTEGSILIDGVD---- 66 (241)
T ss_pred ceEEEEeEEEEeCCe-ee-----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEE----
Confidence 469999999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
+...+...+++. ++|++|++.++. .|+.+|+.+...... ....++.++++
T Consensus 67 ------------------i~~~~~~~~~~~-------i~~~~q~~~~~~--~tv~e~l~~~~~~~~---~~~~~~~~~l~ 116 (241)
T PRK14250 67 ------------------IKTIDVIDLRRK-------IGMVFQQPHLFE--GTVKDNIEYGPMLKG---EKNVDVEYYLS 116 (241)
T ss_pred ------------------hhhcChHHhhhc-------EEEEecCchhch--hhHHHHHhcchhhcC---cHHHHHHHHHH
Confidence 333344444444 999999987765 599999986532211 12345677888
Q ss_pred HcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 230 TFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 230 ~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
.++++ ... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 117 ~~~l~~~~~---~~~~--------~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~ti 185 (241)
T PRK14250 117 IVGLNKEYA---TRDV--------KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTV 185 (241)
T ss_pred HcCCCHHHh---hCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 88874 111 2223 6899999999999999999999999999999 9999999999999987652
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|+|
T Consensus 186 i~~sH~~~~~~~~~d~i 202 (241)
T PRK14250 186 IWITHNMEQAKRIGDYT 202 (241)
T ss_pred EEEeccHHHHHHhCCEE
Confidence 456677777777764
No 110
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=7.6e-37 Score=291.75 Aligned_cols=209 Identities=13% Similarity=0.086 Sum_probs=160.4
Q ss_pred CCCceEEEeEEEEcCCCCc-------cccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEE
Q 021147 68 IGSLTDAKNKILSYTPGAW-------IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 140 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~-------~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~ 140 (317)
.+++|+++||++.|+.... ...+.+|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|+
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~-----p~~G~I~ 79 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK-----ATDGEVA 79 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-----CCCcEEE
Confidence 3468999999999963110 001123999999999999999999999999999999999999 9999999
Q ss_pred ECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhc-cC--CC
Q 021147 141 YNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKS-ME--GD 216 (317)
Q Consensus 141 i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~-~~--~~ 216 (317)
++|++ +...+...++. +.+.|+|++|++. .++..+|+.+|+.+... +. ..
T Consensus 80 ~~G~~----------------------i~~~~~~~~~~----~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~ 133 (331)
T PRK15079 80 WLGKD----------------------LLGMKDDEWRA----VRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLS 133 (331)
T ss_pred ECCEE----------------------CCcCCHHHHHH----HhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCC
Confidence 99986 44444333221 1234999999984 34557899999986432 11 12
Q ss_pred ChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHH
Q 021147 217 SDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDM 295 (317)
Q Consensus 217 ~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~ 295 (317)
.....+++.++++.++++.. ..+.++ .+|||||+||++|||||+.+|+++|+||||+ ||+.++..+.++
T Consensus 134 ~~~~~~~~~~~l~~vgl~~~-~~~~~p---------~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~l 203 (331)
T PRK15079 134 RQEVKDRVKAMMLKVGLLPN-LINRYP---------HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNL 203 (331)
T ss_pred HHHHHHHHHHHHHHcCCChH-HhcCCc---------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 22344566788899888321 122444 6999999999999999999999999999999 999999999999
Q ss_pred HHHHHHh-------cCCCcchhhcccCCC
Q 021147 296 LRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 296 l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
|+++.+. ..|++..+..++|||
T Consensus 204 L~~l~~~~~~til~iTHdl~~~~~~~dri 232 (331)
T PRK15079 204 LQQLQREMGLSLIFIAHDLAVVKHISDRV 232 (331)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 9998653 457788888888875
No 111
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-36 Score=285.15 Aligned_cols=194 Identities=15% Similarity=0.222 Sum_probs=152.9
Q ss_pred eEEEeEEEEcCCCC----ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 72 TDAKNKILSYTPGA----WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 72 I~~~nls~~y~~~~----~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
|+++||+++|+++. .+ |+||||+|++||++||+|+||||||||+|+|+|+++ |++|+|.++|.+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~-----p~~G~i~~~g~~-- 70 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQA-----IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK-----PTTGTVTVDDIT-- 70 (286)
T ss_pred EEEEEEEEEECCCCccccCc-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEE--
Confidence 89999999996432 23 999999999999999999999999999999999999 999999999986
Q ss_pred eeeEecccCCCCcccccceeecc----CChHHHHHHHHHhhhhccccccccc--cccchhhHHHHHHhhhccCC-CChHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRR----SDSSSLRNRMRCKAHKIGCEPSVIR--KVNFVIFVVDGLAVLKSMEG-DSDVE 220 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~----~~~~~~r~~~~~~~~~ig~v~Q~~~--~~~~~~tv~eni~~~~~~~~-~~~~~ 220 (317)
+.. .+...+++. |||+||++. ++. .|+.+|+.++..... .....
T Consensus 71 --------------------i~~~~~~~~~~~~~~~-------ig~v~q~~~~~l~~--~tv~e~i~~~~~~~~~~~~~~ 121 (286)
T PRK13646 71 --------------------ITHKTKDKYIRPVRKR-------IGMVFQFPESQLFE--DTVEREIIFGPKNFKMNLDEV 121 (286)
T ss_pred --------------------CccccccchHHHHHhh-------eEEEecChHhccch--hhHHHHHHhhHHHcCCCHHHH
Confidence 322 122344444 999999873 443 599999987643221 12233
Q ss_pred HHHHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 221 KQYNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 221 ~~~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
.+++.++++.+++. ... +... .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.+.+++
T Consensus 122 ~~~~~~~l~~~gL~~~~~---~~~~--------~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 190 (286)
T PRK13646 122 KNYAHRLLMDLGFSRDVM---SQSP--------FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKS 190 (286)
T ss_pred HHHHHHHHHHcCCChhhh---hCCc--------ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 45567788888873 111 2233 6999999999999999999999999999999 999999999999999
Q ss_pred HHHh-------cCCCcchhhcccCCC
Q 021147 299 CLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 299 l~~~-------~~~~~~~~~~~~~~~ 317 (317)
+.+. ..|++..+..++|||
T Consensus 191 l~~~~g~tvl~vtH~~~~~~~~~dri 216 (286)
T PRK13646 191 LQTDENKTIILVSHDMNEVARYADEV 216 (286)
T ss_pred HHHhCCCEEEEEecCHHHHHHhCCEE
Confidence 8643 446677777777764
No 112
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-37 Score=273.40 Aligned_cols=190 Identities=18% Similarity=0.227 Sum_probs=150.1
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++|+++.|++. .+ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~-~~-----l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~------ 63 (210)
T cd03269 1 LEVENVTKRFGRV-TA-----LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL-----PDSGEVLFDGKP------ 63 (210)
T ss_pred CEEEEEEEEECCE-EE-----EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCCc------
Confidence 5789999999753 34 999999999999999999999999999999999999 999999999975
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-CCChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~a~~ 230 (317)
+.. ..++ .++|++|++.++. ..|+.+|+.+..... .......+++.++++.
T Consensus 64 ----------------~~~----~~~~-------~i~~~~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 115 (210)
T cd03269 64 ----------------LDI----AARN-------RIGYLPEERGLYP-KMKVIDQLVYLAQLKGLKKEEARRRIDEWLER 115 (210)
T ss_pred ----------------hhH----HHHc-------cEEEeccCCcCCc-CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 211 2233 3999999987554 479999998754321 1122334567788888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------c
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------A 303 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~ 303 (317)
+++.... +..+ .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++.+. .
T Consensus 116 ~~l~~~~---~~~~--------~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~ 184 (210)
T cd03269 116 LELSEYA---NKRV--------EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILS 184 (210)
T ss_pred cCChHHH---hCcH--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 8874221 2233 6899999999999999999999999999999 9999999999999987543 4
Q ss_pred CCCcchhhcccCCC
Q 021147 304 DRNLSCKSCARNKV 317 (317)
Q Consensus 304 ~~~~~~~~~~~~~~ 317 (317)
.|+...+.+.+|++
T Consensus 185 sH~~~~~~~~~d~i 198 (210)
T cd03269 185 THQMELVEELCDRV 198 (210)
T ss_pred CCCHHHHHHhhhEE
Confidence 45666666666653
No 113
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.3e-36 Score=274.65 Aligned_cols=200 Identities=16% Similarity=0.191 Sum_probs=153.0
Q ss_pred CceEEEeEEEEcCCCC---ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccC
Q 021147 70 SLTDAKNKILSYTPGA---WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~---~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~ 146 (317)
++|+++||+++|++.. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~-----l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~- 73 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSI-----LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD-----GSSGEVSLVGQP- 73 (228)
T ss_pred ceEEEeeeEEEccCCCcceEE-----EeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCeeEEECCEE-
Confidence 5799999999997531 23 999999999999999999999999999999999999 999999999976
Q ss_pred ceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQ 225 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~ 225 (317)
+...+...... .....++|++|++.++. .+|+.+|+.+...... ......+++.
T Consensus 74 ---------------------~~~~~~~~~~~---~~~~~i~~~~q~~~l~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~ 128 (228)
T PRK10584 74 ---------------------LHQMDEEARAK---LRAKHVGFVFQSFMLIP-TLNALENVELPALLRGESSRQSRNGAK 128 (228)
T ss_pred ---------------------cccCCHHHHHH---HHhheEEEEEcccccCC-CcCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 33343322110 00123999999987554 5799999986532211 1223445677
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++++.+++.... .... ..||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 129 ~~l~~~~l~~~~---~~~~--------~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 197 (228)
T PRK10584 129 ALLEQLGLGKRL---DHLP--------AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHG 197 (228)
T ss_pred HHHHHcCCHhHh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 888888874221 2223 6899999999999999999999999999999 9999999999999988543
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|+...+.. +|++
T Consensus 198 ~tii~~sH~~~~~~~-~d~i 216 (228)
T PRK10584 198 TTLILVTHDLQLAAR-CDRR 216 (228)
T ss_pred CEEEEEecCHHHHHh-CCEE
Confidence 4456655543 5653
No 114
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-36 Score=283.85 Aligned_cols=197 Identities=16% Similarity=0.205 Sum_probs=154.4
Q ss_pred CceEEEeEEEEcCCC-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 70 SLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 70 ~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
++|+++||++.|++. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 4 ~~l~~~~l~~~~~~~~~~~-----l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~-----p~~G~i~~~g~~--- 70 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYA-----LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL-----PEAGTITVGGMV--- 70 (279)
T ss_pred ceEEEEEEEEEeCCCCccc-----eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEE---
Confidence 479999999999642 233 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~ 227 (317)
+...+...+++. |||++|++..+....|+.+|+.++..... ......+++.++
T Consensus 71 -------------------i~~~~~~~~~~~-------i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~ 124 (279)
T PRK13635 71 -------------------LSEETVWDVRRQ-------VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQA 124 (279)
T ss_pred -------------------CCcCcHHHHhhh-------eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHH
Confidence 434444444444 99999998423334699999987532221 222334567778
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++.... .... ..||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 125 l~~~gL~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~t 193 (279)
T PRK13635 125 LRQVGMEDFL---NREP--------HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGIT 193 (279)
T ss_pred HHHcCChhhh---hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCE
Confidence 8888874221 2233 6899999999999999999999999999999 9999999999999998653
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|++..+.. +||+
T Consensus 194 ilivsH~~~~~~~-~d~i 210 (279)
T PRK13635 194 VLSITHDLDEAAQ-ADRV 210 (279)
T ss_pred EEEEecCHHHHHc-CCEE
Confidence 3455666553 6653
No 115
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-37 Score=288.12 Aligned_cols=219 Identities=13% Similarity=0.184 Sum_probs=154.5
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||+++|++.... ...+|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|+++|.+....
T Consensus 2 ~i~~~~l~~~y~~~~~~-~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~-----p~~G~i~~~g~~~~~~- 74 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPT-ELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL-----PDTGTIEWIFKDEKNK- 74 (305)
T ss_pred EEEEEEEEEEECCCCCc-cccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceecccc-
Confidence 48999999999653210 0012999999999999999999999999999999999999 9999999998641000
Q ss_pred EecccCCCCcccccceeecc------CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-CCChHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRR------SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQY 223 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~------~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~ 223 (317)
...- -..+....+.+.. .....+++. |||+||++.......||.+|+.++.... .......++
T Consensus 75 --~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~ 144 (305)
T PRK13651 75 --KKTK-EKEKVLEKLVIQKTRFKKIKKIKEIRRR-------VGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKR 144 (305)
T ss_pred --cccc-cccccccccccccccccccchHHHHHhc-------eEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHH
Confidence 0000 0000000000100 112233333 9999998632222459999998764322 222344566
Q ss_pred HHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 224 NQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 224 ~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
+.++++.+++. ... +... .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 145 ~~~~l~~~gL~~~~~---~~~~--------~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~ 213 (305)
T PRK13651 145 AAKYIELVGLDESYL---QRSP--------FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK 213 (305)
T ss_pred HHHHHHHcCCChhhh---hCCh--------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 78889999974 221 2333 6999999999999999999999999999999 999999999999998864
Q ss_pred h------cCCCcchhhcccCCC
Q 021147 302 H------ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~------~~~~~~~~~~~~~~~ 317 (317)
. ..|++..+...+|||
T Consensus 214 ~g~tiiivtHd~~~~~~~adrv 235 (305)
T PRK13651 214 QGKTIILVTHDLDNVLEWTKRT 235 (305)
T ss_pred CCCEEEEEeeCHHHHHHhCCEE
Confidence 2 456677777777764
No 116
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-37 Score=271.69 Aligned_cols=195 Identities=14% Similarity=0.151 Sum_probs=162.5
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||++.+++++|+.... |++||||++++||++||.|||||||||++|+|++|+. |++|+|++||-+
T Consensus 1 Ml~v~~l~K~y~~~v~-----AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~-----P~~G~v~idg~d----- 65 (245)
T COG4555 1 MLEVTDLTKSYGSKVQ-----AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI-----PDSGKVTIDGVD----- 65 (245)
T ss_pred CeeeeehhhhccCHHh-----hhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc-----CCCceEEEeecc-----
Confidence 6899999999986433 3999999999999999999999999999999999999 999999999976
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhh-ccCCCChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK-SMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~-~~~~~~~~~~~~~~~~a~ 229 (317)
. ..++...|++ ||+++-+. -++..+|++||+.|.. .+.-......+++.++.+
T Consensus 66 -----------------~-~~~p~~vrr~-------IGVl~~e~-glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k 119 (245)
T COG4555 66 -----------------T-VRDPSFVRRK-------IGVLFGER-GLYARLTARENLKYFARLNGLSRKEIKARIAELSK 119 (245)
T ss_pred -----------------c-ccChHHHhhh-------cceecCCc-ChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 2 2455667777 99998444 4666899999998754 333333445667778888
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH------h
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE------H 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~------~ 302 (317)
.+++.... +..+ ..+|-|+|||++|||||+++|+++|||||++ ||..+...+.+.+.++.. .
T Consensus 120 ~l~l~~~~---~rRv--------~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viF 188 (245)
T COG4555 120 RLQLLEYL---DRRV--------GEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIF 188 (245)
T ss_pred HhChHHHH---HHHH--------hhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEE
Confidence 88873222 2333 7999999999999999999999999999999 999999999999999865 3
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
+.|..+-++.+||||
T Consensus 189 SSH~m~EvealCDrv 203 (245)
T COG4555 189 SSHIMQEVEALCDRV 203 (245)
T ss_pred ecccHHHHHHhhheE
Confidence 788888999999986
No 117
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=7e-37 Score=273.61 Aligned_cols=192 Identities=16% Similarity=0.158 Sum_probs=150.4
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++|+++.|++. .+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 i~~~~l~~~~~~~-~~-----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~v~~~g~~------ 63 (213)
T cd03301 1 VELENVTKRFGNV-TA-----LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE-----PTSGRIYIGGRD------ 63 (213)
T ss_pred CEEEeeEEEECCe-ee-----eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE------
Confidence 5789999999764 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~ 230 (317)
+...+.. ++. ++|++|++.++. ..|+.+|+.+...... ......+++.++++.
T Consensus 64 ----------------~~~~~~~--~~~-------i~~~~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 117 (213)
T cd03301 64 ----------------VTDLPPK--DRD-------IAMVFQNYALYP-HMTVYDNIAFGLKLRKVPKDEIDERVREVAEL 117 (213)
T ss_pred ----------------CCcCCcc--cce-------EEEEecChhhcc-CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 2222221 123 999999987553 5799999987532221 122334456677888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------- 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------- 302 (317)
+++.... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 118 ~~l~~~~---~~~~--------~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~ 186 (213)
T cd03301 118 LQIEHLL---DRKP--------KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIY 186 (213)
T ss_pred cCCHHHH---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 8874221 2233 6899999999999999999999999999999 9999999999999998653
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+|+|
T Consensus 187 ~sH~~~~~~~~~d~i 201 (213)
T cd03301 187 VTHDQVEAMTMADRI 201 (213)
T ss_pred EeCCHHHHHHhcCeE
Confidence 346666666666653
No 118
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-37 Score=290.78 Aligned_cols=212 Identities=16% Similarity=0.136 Sum_probs=160.6
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|.+|+++||++.|+.... .+.+|+||||+|++||++||+|+||||||||+++|+|+++|. ..|++|+|.++|++
T Consensus 1 m~~L~v~~l~~~~~~~~~--~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~-~~~~~G~i~~~G~~--- 74 (326)
T PRK11022 1 MALLNVDKLSVHFGDESA--PFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP-GRVMAEKLEFNGQD--- 74 (326)
T ss_pred CceEEEeCeEEEECCCCc--cEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-CCCcceEEEECCEE---
Confidence 357999999999965321 011299999999999999999999999999999999999731 12489999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhc-cC-CCChHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKS-ME-GDSDVEKQYNQ 225 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~-~~-~~~~~~~~~~~ 225 (317)
+..++.+.+++. ..+.|+|+||++. .++..+++.+++..... .. .......+++.
T Consensus 75 -------------------i~~~~~~~~~~~---r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~ 132 (326)
T PRK11022 75 -------------------LQRISEKERRNL---VGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAI 132 (326)
T ss_pred -------------------CCcCCHHHHHHH---hCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 444554444331 1124999999985 36667788877653221 11 12234456778
Q ss_pred HHHHHcCCCc-ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 226 IVATTFNCPY-LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 226 ~~a~~~~l~~-~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
++++.++++. ....+.++ .+|||||+||++|||||+.+|+++|+||||+ ||+.++..+.+.|+++.+.
T Consensus 133 ~~L~~~gL~~~~~~l~~~p---------~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~ 203 (326)
T PRK11022 133 DLLNQVGIPDPASRLDVYP---------HQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKE 203 (326)
T ss_pred HHHHHCCCCChHHHHhCCc---------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 8899999842 11122344 6999999999999999999999999999999 9999999999999998653
Q ss_pred ------cCCCcchhhcccCCC
Q 021147 303 ------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ------~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|||
T Consensus 204 g~til~iTHdl~~~~~~adri 224 (326)
T PRK11022 204 NMALVLITHDLALVAEAAHKI 224 (326)
T ss_pred CCEEEEEeCCHHHHHHhCCEE
Confidence 467788888888875
No 119
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-37 Score=295.82 Aligned_cols=195 Identities=15% Similarity=0.122 Sum_probs=156.4
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+|+|+|+.+ |++|+|+++|++
T Consensus 17 ~~~l~l~~v~~~~~~~-~~-----l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~i~g~~--- 82 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQ-HA-----VDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ-----PTAGQIMLDGVD--- 82 (377)
T ss_pred CceEEEEeEEEEECCE-EE-----EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEE---
Confidence 4579999999999753 33 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~ 227 (317)
+...++ .++. |||+||++.+|+ .+||.+|++++..... ......+++.++
T Consensus 83 -------------------i~~~~~--~~r~-------ig~vfQ~~~lfp-~ltv~eNi~~~l~~~~~~~~~~~~~v~~~ 133 (377)
T PRK11607 83 -------------------LSHVPP--YQRP-------INMMFQSYALFP-HMTVEQNIAFGLKQDKLPKAEIASRVNEM 133 (377)
T ss_pred -------------------CCCCCH--HHCC-------EEEEeCCCccCC-CCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 333332 2333 999999998665 6899999998643222 223344567788
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++.. +.+.++ .+|||||+||++|||||+.+|++++||||++ ||+.++..+.+.++++.+.
T Consensus 134 l~~l~L~~--~~~~~~---------~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t 202 (377)
T PRK11607 134 LGLVHMQE--FAKRKP---------HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVT 202 (377)
T ss_pred HHHcCCch--hhcCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 89888742 222344 6999999999999999999999999999999 9999999999988887653
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|+...+..++|||
T Consensus 203 ii~vTHd~~ea~~laDri 220 (377)
T PRK11607 203 CVMVTHDQEEAMTMAGRI 220 (377)
T ss_pred EEEEcCCHHHHHHhCCEE
Confidence 445666666666664
No 120
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=278.76 Aligned_cols=204 Identities=17% Similarity=0.172 Sum_probs=155.6
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|++|+++||+++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++|....|++|+|.++|.+
T Consensus 1 ~~~l~~~~l~~~~~~~-~~-----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~--- 71 (250)
T PRK14247 1 MNKIEIRDLKVSFGQV-EV-----LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQD--- 71 (250)
T ss_pred CceEEEEeeEEEECCe-ee-----eecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEE---
Confidence 3579999999999754 34 99999999999999999999999999999999999732112479999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC---CChHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG---DSDVEKQYNQ 225 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~---~~~~~~~~~~ 225 (317)
+...+...+++. |||++|++.++ ..+|+.+|+.+...... ......+++.
T Consensus 72 -------------------i~~~~~~~~~~~-------i~~v~q~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~ 124 (250)
T PRK14247 72 -------------------IFKMDVIELRRR-------VQMVFQIPNPI-PNLSIFENVALGLKLNRLVKSKKELQERVR 124 (250)
T ss_pred -------------------CCcCCHHHHhcc-------EEEEeccCccC-CCCcHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 433444444444 99999998644 45799999987532211 1123345677
Q ss_pred HHHHHcCCCcc--cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH-
Q 021147 226 IVATTFNCPYL--SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE- 301 (317)
Q Consensus 226 ~~a~~~~l~~~--~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~- 301 (317)
++++.+++... ... +... .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 125 ~~l~~~~l~~~~~~~~-~~~~--------~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~ 195 (250)
T PRK14247 125 WALEKAQLWDEVKDRL-DAPA--------GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKD 195 (250)
T ss_pred HHHHHcCCCcchhhhh-cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcC
Confidence 88888887321 111 2223 6899999999999999999999999999999 999999999999998743
Q ss_pred ----hcCCCcchhhcccCCC
Q 021147 302 ----HADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ----~~~~~~~~~~~~~~~~ 317 (317)
...|++..+...+|+|
T Consensus 196 ~tiii~sH~~~~~~~~~d~i 215 (250)
T PRK14247 196 MTIVLVTHFPQQAARISDYV 215 (250)
T ss_pred CEEEEEeCCHHHHHHhcCEE
Confidence 1445666666666654
No 121
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-36 Score=274.02 Aligned_cols=190 Identities=16% Similarity=0.179 Sum_probs=149.6
Q ss_pred eEEEeEEEEcCCC---CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 72 TDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 72 I~~~nls~~y~~~---~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|+++|+++.|++. ..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~~~~~~i-----l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~--- 67 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTA-----LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER-----PTSGEVLVDGEP--- 67 (220)
T ss_pred CeEEEEEEEcCCCCcceEE-----EeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE---
Confidence 5789999999752 234 999999999999999999999999999999999999 999999999976
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~ 227 (317)
+.. .++ .++|++|++.++. ..|+.+|+.+...... ......+++.++
T Consensus 68 -------------------~~~-----~~~-------~i~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 115 (220)
T cd03293 68 -------------------VTG-----PGP-------DRGYVFQQDALLP-WLTVLDNVALGLELQGVPKAEARERAEEL 115 (220)
T ss_pred -------------------Ccc-----ccC-------cEEEEeccccccc-CCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 221 122 3999999987554 4799999987532211 112334567788
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++.... .... .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 116 l~~~~l~~~~---~~~~--------~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~t 184 (220)
T cd03293 116 LELVGLSGFE---NAYP--------HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKT 184 (220)
T ss_pred HHHcCChhhh---hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCE
Confidence 8888874211 2233 6899999999999999999999999999999 9999999999999987543
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+|++
T Consensus 185 iii~sH~~~~~~~~~d~i 202 (220)
T cd03293 185 VLLVTHDIDEAVFLADRV 202 (220)
T ss_pred EEEEecCHHHHHHhCCEE
Confidence 345666666666653
No 122
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-36 Score=284.74 Aligned_cols=197 Identities=16% Similarity=0.190 Sum_probs=153.5
Q ss_pred ceEEEeEEEEcCCC----CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccC
Q 021147 71 LTDAKNKILSYTPG----AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 71 ~I~~~nls~~y~~~----~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~ 146 (317)
+|+++||++.|++. ..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~-----l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~- 70 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKG-----LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK-----PSSGTITIAGYH- 70 (287)
T ss_pred EEEEEEEEEEcCCCCCccccc-----eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEE-
Confidence 58999999999742 233 999999999999999999999999999999999999 999999999986
Q ss_pred ceeeEecccCCCCcccccceeeccC----ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-CCChHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRS----DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEK 221 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~----~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~ 221 (317)
+... +....++. +||++|++......+|+.+|+.+..... .......
T Consensus 71 ---------------------~~~~~~~~~~~~~~~~-------ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 122 (287)
T PRK13641 71 ---------------------ITPETGNKNLKKLRKK-------VSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122 (287)
T ss_pred ---------------------CccccccchHHHHHhc-------eEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHH
Confidence 2211 12233333 9999998731122469999998754322 2222334
Q ss_pred HHHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 222 QYNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 222 ~~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
+++.++++.+++. ... +... ..||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++
T Consensus 123 ~~~~~~l~~~gL~~~~~---~~~~--------~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l 191 (287)
T PRK13641 123 EKALKWLKKVGLSEDLI---SKSP--------FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDY 191 (287)
T ss_pred HHHHHHHHHcCCChhHh---hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 5567888888873 222 3333 7999999999999999999999999999999 9999999999999998
Q ss_pred HHh------cCCCcchhhcccCCC
Q 021147 300 LEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 300 ~~~------~~~~~~~~~~~~~~~ 317 (317)
.+. ..|++..+...+|+|
T Consensus 192 ~~~g~tvlivsH~~~~~~~~~d~v 215 (287)
T PRK13641 192 QKAGHTVILVTHNMDDVAEYADDV 215 (287)
T ss_pred HhCCCEEEEEeCCHHHHHHhCCEE
Confidence 542 557777777777764
No 123
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2e-36 Score=273.60 Aligned_cols=194 Identities=15% Similarity=0.168 Sum_probs=152.7
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++||++.|++. .+ ++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 5 ~~~i~~~~l~~~~~~~-~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~--- 70 (225)
T PRK10247 5 SPLLQLQNVGYLAGDA-KI-----LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS-----PTSGTLLFEGED--- 70 (225)
T ss_pred CceEEEeccEEeeCCc-ee-----eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCeEEECCEE---
Confidence 3479999999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
+...+...+++. ++|++|++.++. .|+.+|+.+....... ....+++.+++
T Consensus 71 -------------------~~~~~~~~~~~~-------i~~~~q~~~l~~--~tv~enl~~~~~~~~~-~~~~~~~~~~l 121 (225)
T PRK10247 71 -------------------ISTLKPEIYRQQ-------VSYCAQTPTLFG--DTVYDNLIFPWQIRNQ-QPDPAIFLDDL 121 (225)
T ss_pred -------------------cCcCCHHHHHhc-------cEEEeccccccc--ccHHHHHHhHHhhcCC-ChHHHHHHHHH
Confidence 334444444444 999999987765 4999999864322111 12234566788
Q ss_pred HHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 229 TTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 229 ~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
+.+++. ... +... .+||+||+||++||||++.+|+++||||||+ ||+.+...+.+.|+++.+.
T Consensus 122 ~~~~l~~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~t 190 (225)
T PRK10247 122 ERFALPDTIL---TKNI--------AELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIA 190 (225)
T ss_pred HHcCCChHHh---cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 888873 111 2333 6899999999999999999999999999999 9999999999999998653
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|+...+.+ +|++
T Consensus 191 vii~sh~~~~~~~-~d~i 207 (225)
T PRK10247 191 VLWVTHDKDEINH-ADKV 207 (225)
T ss_pred EEEEECChHHHHh-CCEE
Confidence 3355555543 6653
No 124
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.5e-36 Score=275.99 Aligned_cols=193 Identities=18% Similarity=0.244 Sum_probs=151.0
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 ~l~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~----- 64 (236)
T TIGR03864 1 ALEVAGLSFAYGAR-RA-----LDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV-----AQEGQISVAGHD----- 64 (236)
T ss_pred CEEEEeeEEEECCE-EE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEE-----
Confidence 58999999999754 34 999999999999999999999999999999999999 999999999975
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~ 229 (317)
+...+.. .++. ++|++|++.++ ..+|+.+|+.+...... ......+++.++++
T Consensus 65 -----------------i~~~~~~-~~~~-------i~~~~q~~~~~-~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 118 (236)
T TIGR03864 65 -----------------LRRAPRA-ALAR-------LGVVFQQPTLD-LDLSVRQNLRYHAALHGLSRAEARERIAALLA 118 (236)
T ss_pred -----------------cccCChh-hhhh-------EEEeCCCCCCc-ccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3333322 2223 99999998654 35799999986543221 11223445677888
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
.+++.... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 119 ~~gl~~~~---~~~~--------~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii 187 (236)
T TIGR03864 119 RLGLAERA---DDKV--------RELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVL 187 (236)
T ss_pred HcCChhhh---cCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 88874221 2233 6899999999999999999999999999999 9999999999999998642
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+.+ +|++
T Consensus 188 i~sH~~~~~~~-~d~i 202 (236)
T TIGR03864 188 WATHLVDEIEA-DDRL 202 (236)
T ss_pred EEecChhhHhh-CCEE
Confidence 4466666654 6653
No 125
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.2e-36 Score=277.10 Aligned_cols=195 Identities=16% Similarity=0.247 Sum_probs=152.3
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++|+++.|++. .+ |+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|.+
T Consensus 1 ~l~~~~l~~~~~~~-~i-----l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~----- 64 (240)
T PRK09493 1 MIEFKNVSKHFGPT-QV-----LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE-----ITSGDLIVDGLK----- 64 (240)
T ss_pred CEEEEeEEEEECCe-EE-----eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE-----
Confidence 58999999999753 34 999999999999999999999999999999999999 999999999976
Q ss_pred EecccCCCCcccccceeeccC--ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-c-CCCChHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRS--DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-M-EGDSDVEKQYNQI 226 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~-~~~~~~~~~~~~~ 226 (317)
+... +...+++. ++|++|++.++. .+|+.+|+.+... . ........+++.+
T Consensus 65 -----------------~~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 119 (240)
T PRK09493 65 -----------------VNDPKVDERLIRQE-------AGMVFQQFYLFP-HLTALENVMFGPLRVRGASKEEAEKQARE 119 (240)
T ss_pred -----------------CCcCChhHHHHhhc-------eEEEecccccCC-CCcHHHHHHhHHHHhcCCCHHHHHHHHHH
Confidence 3222 12233333 999999986553 5799999986531 1 1112223455677
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... .... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 120 ~l~~~gl~~~~---~~~~--------~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~t 188 (240)
T PRK09493 120 LLAKVGLAERA---HHYP--------SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMT 188 (240)
T ss_pred HHHHcCChHHH---hcCh--------hhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCE
Confidence 88888874221 2223 6899999999999999999999999999999 9999999999999988643
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+||+
T Consensus 189 iii~sH~~~~~~~~~d~i 206 (240)
T PRK09493 189 MVIVTHEIGFAEKVASRL 206 (240)
T ss_pred EEEEeCCHHHHHHhCCEE
Confidence 456666666666663
No 126
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-36 Score=282.12 Aligned_cols=197 Identities=18% Similarity=0.259 Sum_probs=153.7
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||+++|++...+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 ~l~~~~l~~~~~~~~~~-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~----- 65 (275)
T PRK13639 1 ILETRDLKYSYPDGTEA-----LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK-----PTSGEVLIKGEP----- 65 (275)
T ss_pred CEEEEEEEEEeCCCCee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEE-----
Confidence 58999999999643334 999999999999999999999999999999999999 999999999986
Q ss_pred EecccCCCCcccccceeec--cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIV 227 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~ 227 (317)
+. ..+...+++. |+|++|++.......|+.+|+.+...... ......+++.++
T Consensus 66 -----------------~~~~~~~~~~~~~~-------i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~ 121 (275)
T PRK13639 66 -----------------IKYDKKSLLEVRKT-------VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEA 121 (275)
T ss_pred -----------------CccccchHHHHHhh-------eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 32 1122233444 99999997422224599999987543221 122334556778
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++... . .... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++.+.
T Consensus 122 l~~~~L~~~--~-~~~~--------~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~ti 190 (275)
T PRK13639 122 LKAVGMEGF--E-NKPP--------HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITI 190 (275)
T ss_pred HHHCCCchh--h-cCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 888887422 1 2333 7999999999999999999999999999999 9999999999999998642
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+||+
T Consensus 191 l~vtH~~~~~~~~~d~i 207 (275)
T PRK13639 191 IISTHDVDLVPVYADKV 207 (275)
T ss_pred EEEecCHHHHHHhCCEE
Confidence 456677777777764
No 127
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.1e-36 Score=287.03 Aligned_cols=194 Identities=16% Similarity=0.205 Sum_probs=155.2
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+++++|++++|++. .+ |+|+||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 2 ~l~~~~l~~~~~~~-~~-----l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~-----~~~G~i~i~g~~----- 65 (301)
T TIGR03522 2 SIRVSSLTKLYGTQ-NA-----LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP-----PDSGSVQVCGED----- 65 (301)
T ss_pred EEEEEEEEEEECCE-EE-----EEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE-----
Confidence 48999999999754 33 999999999999999999999999999999999999 999999999976
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~ 229 (317)
+.. ....+++. +||+||++.++ ..+|+.+|+.+...... ......+++.++++
T Consensus 66 -----------------~~~-~~~~~~~~-------ig~~~q~~~l~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~ 119 (301)
T TIGR03522 66 -----------------VLQ-NPKEVQRN-------IGYLPEHNPLY-LDMYVREYLQFIAGIYGMKGQLLKQRVEEMIE 119 (301)
T ss_pred -----------------ccc-ChHHHHhc-------eEEecCCCCCC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 322 22234444 99999998754 45799999987543222 11223455778888
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH-----hc
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE-----HA 303 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~-----~~ 303 (317)
.+++.... +..+ ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++.+ .+
T Consensus 120 ~~gl~~~~---~~~~--------~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~ 188 (301)
T TIGR03522 120 LVGLRPEQ---HKKI--------GQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILS 188 (301)
T ss_pred HCCCchHh---cCch--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 88874222 3333 7899999999999999999999999999999 999999999999999743 25
Q ss_pred CCCcchhhcccCCC
Q 021147 304 DRNLSCKSCARNKV 317 (317)
Q Consensus 304 ~~~~~~~~~~~~~~ 317 (317)
.|.+..+..+||||
T Consensus 189 sH~l~~~~~~~d~i 202 (301)
T TIGR03522 189 THIMQEVEAICDRV 202 (301)
T ss_pred cCCHHHHHHhCCEE
Confidence 66677777777774
No 128
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-36 Score=281.87 Aligned_cols=198 Identities=17% Similarity=0.220 Sum_probs=153.0
Q ss_pred CCceEEEeEEEEcCC-CCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 69 GSLTDAKNKILSYTP-GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 69 ~~~I~~~nls~~y~~-~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
..+|+++|+++.|++ ...+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 5 ~~~l~~~nl~~~~~~~~~~i-----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~-- 72 (271)
T PRK13632 5 SVMIKVENVSFSYPNSENNA-----LKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK-----PQSGEIKIDGIT-- 72 (271)
T ss_pred ceEEEEEeEEEEcCCCCccc-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEe--
Confidence 358999999999963 3334 999999999999999999999999999999999999 999999999986
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQI 226 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~ 226 (317)
+...+...+++. ++|++|++..+....|+++|+.+...... .......++.+
T Consensus 73 --------------------i~~~~~~~~~~~-------i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ 125 (271)
T PRK13632 73 --------------------ISKENLKEIRKK-------IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDD 125 (271)
T ss_pred --------------------cCcCCHHHHhcc-------eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHH
Confidence 433444445544 99999997423334799999987543221 12223345677
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 126 ~l~~~~l~~~~---~~~~--------~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~ 194 (271)
T PRK13632 126 LAKKVGMEDYL---DKEP--------QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKK 194 (271)
T ss_pred HHHHcCCHHHh---hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCc
Confidence 88888873211 2222 6899999999999999999999999999999 9999999999999998643
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|+...+. .+|+|
T Consensus 195 tiii~sH~~~~~~-~~d~v 212 (271)
T PRK13632 195 TLISITHDMDEAI-LADKV 212 (271)
T ss_pred EEEEEEechhHHh-hCCEE
Confidence 345555553 45553
No 129
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.2e-36 Score=293.50 Aligned_cols=194 Identities=12% Similarity=0.096 Sum_probs=155.2
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcC--cEEEECcccCc
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER--AQVTYNSSVGD 147 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~--G~I~i~g~~~~ 147 (317)
+.|+++||+++|++. .+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++ |+|.++|++
T Consensus 4 ~~l~~~~l~~~~~~~-~~-----l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~~~G~i~~~g~~-- 70 (362)
T TIGR03258 4 GGIRIDHLRVAYGAN-TV-----LDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK-----AAGLTGRIAIADRD-- 70 (362)
T ss_pred eEEEEEEEEEEECCe-EE-----EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCEEEEECCEE--
Confidence 358999999999754 33 999999999999999999999999999999999999 999 999999986
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQI 226 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~ 226 (317)
+...+. .++ .|||++|++.+| ..+||++|+.|+..... ......+++.+
T Consensus 71 --------------------~~~~~~--~~r-------~ig~vfQ~~~l~-p~~tv~enl~~~l~~~~~~~~~~~~~v~~ 120 (362)
T TIGR03258 71 --------------------LTHAPP--HKR-------GLALLFQNYALF-PHLKVEDNVAFGLRAQKMPKADIAERVAD 120 (362)
T ss_pred --------------------CCCCCH--HHC-------CEEEEECCcccC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 333332 122 399999999866 46899999998653222 22334556788
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++... .+.++ .+|||||+||++|||||+.+|++++||||++ ||+.++..+.+.|+++.+.
T Consensus 121 ~l~~~gL~~~--~~~~~---------~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g 189 (362)
T TIGR03258 121 ALKLVGLGDA--AAHLP---------AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPE 189 (362)
T ss_pred HHHhcCCCch--hhCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCC
Confidence 8999998422 22333 6999999999999999999999999999999 9999999999999988654
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|+...+..++|||
T Consensus 190 ~til~vTHd~~ea~~l~dri 209 (362)
T TIGR03258 190 LTILCVTHDQDDALTLADKA 209 (362)
T ss_pred CEEEEEeCCHHHHHHhCCEE
Confidence 335555555566654
No 130
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-36 Score=279.03 Aligned_cols=195 Identities=19% Similarity=0.217 Sum_probs=153.9
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++|++++|++. .+ |+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|++
T Consensus 2 ~l~~~~l~~~~~~~-~i-----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~----- 65 (255)
T PRK11231 2 TLRTENLTVGYGTK-RI-----LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT-----PQSGTVFLGDKP----- 65 (255)
T ss_pred EEEEEeEEEEECCE-EE-----EeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCCcEEEECCEE-----
Confidence 68999999999754 34 999999999999999999999999999999999999 999999999975
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-----cCCCChHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-----MEGDSDVEKQYNQ 225 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-----~~~~~~~~~~~~~ 225 (317)
+...+...+++. ++|++|++.++ ...|+.+|+.++.. +........+++.
T Consensus 66 -----------------~~~~~~~~~~~~-------i~~~~q~~~~~-~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~ 120 (255)
T PRK11231 66 -----------------ISMLSSRQLARR-------LALLPQHHLTP-EGITVRELVAYGRSPWLSLWGRLSAEDNARVN 120 (255)
T ss_pred -----------------hHHCCHHHHhhh-------eEEecccCCCC-CCccHHHHHHhccchhhhhccCCCHHHHHHHH
Confidence 333444444444 99999998655 35789999987521 1111223345567
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++++.+++.... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 121 ~~l~~~~l~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~ 189 (255)
T PRK11231 121 QAMEQTRINHLA---DRRL--------TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGK 189 (255)
T ss_pred HHHHHcCCHHHH---cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 788888874221 2223 6899999999999999999999999999999 9999999999999987542
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|+|
T Consensus 190 tiii~tH~~~~~~~~~d~i 208 (255)
T PRK11231 190 TVVTVLHDLNQASRYCDHL 208 (255)
T ss_pred EEEEEECCHHHHHHhcCEE
Confidence 446666666666653
No 131
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.4e-37 Score=271.78 Aligned_cols=197 Identities=15% Similarity=0.189 Sum_probs=155.3
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
+|++++||+..|+..+ + |++|||++++||+++|+|+||+|||||+|+|+|+.+ |.+|+|.++|++
T Consensus 2 ~mL~v~~l~~~YG~~~-~-----L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~-----~~~G~I~~~G~d---- 66 (237)
T COG0410 2 PMLEVENLSAGYGKIQ-A-----LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR-----PRSGRIIFDGED---- 66 (237)
T ss_pred CceeEEeEeeccccee-E-----EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeeEEECCee----
Confidence 5899999999998754 3 999999999999999999999999999999999999 999999999998
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
+..+++...-+. .|+||||...+|+ .+||.||+.++.............+..+.+
T Consensus 67 ------------------it~~p~~~r~r~------Gi~~VPegR~iF~-~LTVeENL~~g~~~~~~~~~~~~~~e~v~~ 121 (237)
T COG0410 67 ------------------ITGLPPHERARL------GIAYVPEGRRIFP-RLTVEENLLLGAYARRDKEAQERDLEEVYE 121 (237)
T ss_pred ------------------cCCCCHHHHHhC------CeEeCcccccchh-hCcHHHHHhhhhhcccccccccccHHHHHH
Confidence 667766544332 4999999998776 699999998764322211111111333433
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
.+ |.+.-..+... ..|||||+|.++|||||+.+|++++||||+. |-|.-.+.|.+.|+++.+.
T Consensus 122 lF--P~Lker~~~~a--------G~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIl 191 (237)
T COG0410 122 LF--PRLKERRNQRA--------GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTIL 191 (237)
T ss_pred HC--hhHHHHhcCcc--------cCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEE
Confidence 32 21111112222 6999999999999999999999999999999 9999999999999999864
Q ss_pred -cCCCcchhhcccCC
Q 021147 303 -ADRNLSCKSCARNK 316 (317)
Q Consensus 303 -~~~~~~~~~~~~~~ 316 (317)
.+.|+..+.+++||
T Consensus 192 LVEQn~~~Al~iaDr 206 (237)
T COG0410 192 LVEQNARFALEIADR 206 (237)
T ss_pred EEeccHHHHHHhhCE
Confidence 45777777777776
No 132
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-36 Score=278.65 Aligned_cols=195 Identities=16% Similarity=0.225 Sum_probs=154.1
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||++.|++. .+ |+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|+++|.+
T Consensus 2 ~l~~~~l~~~~~~~-~i-----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----p~~G~i~~~g~~----- 65 (258)
T PRK13548 2 MLEARNLSVRLGGR-TL-----LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS-----PDSGEVRLNGRP----- 65 (258)
T ss_pred eEEEEeEEEEeCCe-ee-----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEE-----
Confidence 68999999999754 34 999999999999999999999999999999999999 999999999975
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-CCChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~a~ 229 (317)
+..++...+++. ++|++|++.++ ..+|+.+|+.+..... .......+++.++++
T Consensus 66 -----------------~~~~~~~~~~~~-------i~~~~q~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~ 120 (258)
T PRK13548 66 -----------------LADWSPAELARR-------RAVLPQHSSLS-FPFTVEEVVAMGRAPHGLSRAEDDALVAAALA 120 (258)
T ss_pred -----------------cccCCHHHhhhh-------eEEEccCCcCC-CCCCHHHHHHhhhcccCCCcHHHHHHHHHHHH
Confidence 333444444444 99999998653 3579999998753211 111223345677888
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceec------cccceeeccCCCC-CCHHHHHHHHHHHHHHH-H
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLG------IPPAKQIFDIPES-SDPENELIIVDMLRYCL-E 301 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~------~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~-~ 301 (317)
.+++.... +..+ .+|||||+||++||||++ .+|+++||||||+ ||+.++..+.+.|+++. +
T Consensus 121 ~~~l~~~~---~~~~--------~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 189 (258)
T PRK13548 121 QVDLAHLA---GRDY--------PQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE 189 (258)
T ss_pred HcCCHhHh---cCCc--------ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 88874211 2233 699999999999999999 5999999999999 99999999999999986 3
Q ss_pred h------cCCCcchhhcccCCC
Q 021147 302 H------ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~------~~~~~~~~~~~~~~~ 317 (317)
. ..|++..+...+|+|
T Consensus 190 ~~~tiii~sH~~~~~~~~~d~i 211 (258)
T PRK13548 190 RGLAVIVVLHDLNLAARYADRI 211 (258)
T ss_pred cCCEEEEEECCHHHHHHhcCEE
Confidence 2 446677777777764
No 133
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.3e-36 Score=275.48 Aligned_cols=197 Identities=16% Similarity=0.163 Sum_probs=153.5
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++|+++.|++. .+ |+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 ~~i~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~---- 65 (242)
T TIGR03411 1 PILYLEGLSVSFDGF-KA-----LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR-----PDEGSVLFGGTD---- 65 (242)
T ss_pred CeEEEEeeEEEcCCe-EE-----eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCee----
Confidence 368999999999754 34 999999999999999999999999999999999999 999999999975
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC---------CCChHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME---------GDSDVE 220 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~---------~~~~~~ 220 (317)
+...+.....+ ..++|++|++.+++ .+|+.+|+.+..... ......
T Consensus 66 ------------------~~~~~~~~~~~------~~i~~~~q~~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~ 120 (242)
T TIGR03411 66 ------------------LTGLPEHQIAR------AGIGRKFQKPTVFE-NLTVFENLELALPRDKSVFASLFFRLSAEE 120 (242)
T ss_pred ------------------cCCCCHHHHHh------cCeeEeccccccCC-CCCHHHHHHHhhhcccccccccccccHHHH
Confidence 33333322211 13999999987664 579999998753211 001223
Q ss_pred HHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 221 KQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 221 ~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
.+++.++++.+++.... +..+ ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++
T Consensus 121 ~~~~~~~l~~~~l~~~~---~~~~--------~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~ 189 (242)
T TIGR03411 121 KDRIEEVLETIGLADEA---DRLA--------GLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSL 189 (242)
T ss_pred HHHHHHHHHHcCCchhh---cCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHH
Confidence 45567788888874221 2233 6899999999999999999999999999999 9999999999999998
Q ss_pred HHh-----cCCCcchhhcccCCC
Q 021147 300 LEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 300 ~~~-----~~~~~~~~~~~~~~~ 317 (317)
.+. ..|++..+.+.+|+|
T Consensus 190 ~~~~tii~~sH~~~~~~~~~d~i 212 (242)
T TIGR03411 190 AGKHSVVVVEHDMEFVRSIADKV 212 (242)
T ss_pred hcCCEEEEEECCHHHHHHhCCEE
Confidence 542 446666666777764
No 134
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-36 Score=276.46 Aligned_cols=196 Identities=18% Similarity=0.225 Sum_probs=151.7
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++||+++|++. .+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 2 ~~l~~~~l~~~~~~~-~~-----l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~---- 66 (241)
T PRK10895 2 ATLTAKNLAKAYKGR-RV-----VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP-----RDAGNIIIDDED---- 66 (241)
T ss_pred ceEEEeCcEEEeCCE-EE-----EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEE----
Confidence 479999999999753 34 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCChHH-HHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC--CChHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSS-LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG--DSDVEKQYNQI 226 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~--~~~~~~~~~~~ 226 (317)
+...+... .++. ++|++|++.++. .+|+.+|+.+...... .......++.+
T Consensus 67 ------------------~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~ 120 (241)
T PRK10895 67 ------------------ISLLPLHARARRG-------IGYLPQEASIFR-RLSVYDNLMAVLQIRDDLSAEQREDRANE 120 (241)
T ss_pred ------------------CCCCCHHHHHHhC-------eEEeccCCcccc-cCcHHHHHhhhhhcccccCHHHHHHHHHH
Confidence 33333322 2333 999999987554 4799999986532111 11223445677
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... +... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++.+.
T Consensus 121 ~l~~~~l~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~t 189 (241)
T PRK10895 121 LMEEFHIEHLR---DSMG--------QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLG 189 (241)
T ss_pred HHHHcCCHHHh---hcch--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCE
Confidence 78888763211 2233 6899999999999999999999999999999 9999999999999887542
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|+...+.+.+|+|
T Consensus 190 iii~sH~~~~~~~~~d~v 207 (241)
T PRK10895 190 VLITDHNVRETLAVCERA 207 (241)
T ss_pred EEEEEcCHHHHHHhcCEE
Confidence 345555555566653
No 135
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-36 Score=278.88 Aligned_cols=190 Identities=13% Similarity=0.143 Sum_probs=151.1
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||++.|++. .+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|+++|++
T Consensus 1 ml~~~~l~~~~~~~-~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~----- 64 (255)
T PRK11248 1 MLQISHLYADYGGK-PA-----LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP-----YQHGSITLDGKP----- 64 (255)
T ss_pred CEEEEEEEEEeCCe-ee-----EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEE-----
Confidence 58999999999753 34 999999999999999999999999999999999999 999999999976
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~ 229 (317)
+.... .. +||++|++.++. ..|+.+|+.+...... ......+++.++++
T Consensus 65 -----------------~~~~~-----~~-------~~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~ 114 (255)
T PRK11248 65 -----------------VEGPG-----AE-------RGVVFQNEGLLP-WRNVQDNVAFGLQLAGVEKMQRLEIAHQMLK 114 (255)
T ss_pred -----------------CCCCC-----Cc-------EEEEeCCCccCC-CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHH
Confidence 22111 12 899999986553 4799999986532211 11223456778888
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
.+++.... .... .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 115 ~~gl~~~~---~~~~--------~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvi 183 (255)
T PRK11248 115 KVGLEGAE---KRYI--------WQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVL 183 (255)
T ss_pred HcCChhHh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 88874221 2233 6899999999999999999999999999999 9999999999999997542
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+|+|
T Consensus 184 ivsH~~~~~~~~~d~i 199 (255)
T PRK11248 184 LITHDIEEAVFMATEL 199 (255)
T ss_pred EEeCCHHHHHHhCCEE
Confidence 456677777777764
No 136
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-36 Score=275.69 Aligned_cols=196 Identities=15% Similarity=0.143 Sum_probs=150.6
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+++|+++||+++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 3 ~~~l~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~--- 68 (237)
T PRK11614 3 KVMLSFDKVSAHYGKI-QA-----LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR-----ATSGRIVFDGKD--- 68 (237)
T ss_pred ccEEEEEeEEEeeCCc-ee-----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCceEEECCEe---
Confidence 4589999999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred eeEecccCCCCcccccceeeccCChHH-HHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSS-LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~ 227 (317)
+...+... .++. ++|++|++.+++ .+|+.+|+.+...... .....+++.++
T Consensus 69 -------------------~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~tv~~~l~~~~~~~~-~~~~~~~~~~~ 120 (237)
T PRK11614 69 -------------------ITDWQTAKIMREA-------VAIVPEGRRVFS-RMTVEENLAMGGFFAE-RDQFQERIKWV 120 (237)
T ss_pred -------------------cCCCCHHHHHHhC-------EEEeccCcccCC-CCcHHHHHHHhhhccC-hhHHHHHHHHH
Confidence 33333322 2333 999999987664 5799999987542221 11222334455
Q ss_pred HHHc-CCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 228 ATTF-NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 228 a~~~-~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
++.+ ++... .+. .. .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 121 l~~~~~l~~~--~~~-~~--------~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~t 189 (237)
T PRK11614 121 YELFPRLHER--RIQ-RA--------GTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMT 189 (237)
T ss_pred HHHHHHHHHH--HhC-ch--------hhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCE
Confidence 5555 23211 112 22 6899999999999999999999999999999 9999999999999987643
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+||+
T Consensus 190 iii~sH~~~~~~~~~d~i 207 (237)
T PRK11614 190 IFLVEQNANQALKLADRG 207 (237)
T ss_pred EEEEeCcHHHHHhhCCEE
Confidence 456666666667764
No 137
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=2.2e-36 Score=279.80 Aligned_cols=197 Identities=17% Similarity=0.175 Sum_probs=153.5
Q ss_pred ceEEEeEEEEcCC--------CCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEEC
Q 021147 71 LTDAKNKILSYTP--------GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 142 (317)
Q Consensus 71 ~I~~~nls~~y~~--------~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~ 142 (317)
+|+++||++.|+. ...+ |+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~i-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~ 71 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPV-----LTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK-----PAQGTVSFR 71 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEE-----eeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEEC
Confidence 6899999999963 2233 999999999999999999999999999999999999 999999999
Q ss_pred cccCceeeEecccCCCCcccccceeeccCChHH---HHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhc-cCC-C
Q 021147 143 SSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSS---LRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKS-MEG-D 216 (317)
Q Consensus 143 g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~-~~~-~ 216 (317)
|++ +...+... +++ .|+|++|++. .+....|+.+|+.+... ... .
T Consensus 72 g~~----------------------i~~~~~~~~~~~~~-------~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~ 122 (265)
T TIGR02769 72 GQD----------------------LYQLDRKQRRAFRR-------DVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLD 122 (265)
T ss_pred CEE----------------------ccccCHHHHHHHhh-------ceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCC
Confidence 976 33333322 233 3999999974 35556799999975432 111 1
Q ss_pred ChHHHHHHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHH
Q 021147 217 SDVEKQYNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVD 294 (317)
Q Consensus 217 ~~~~~~~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~ 294 (317)
.....+++.++++.+++. ... +... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+
T Consensus 123 ~~~~~~~~~~~l~~~gl~~~~~---~~~~--------~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~ 191 (265)
T TIGR02769 123 ESEQKARIAELLDMVGLRSEDA---DKLP--------RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILE 191 (265)
T ss_pred HHHHHHHHHHHHHHcCCChhhh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 123345577888888873 211 2233 6899999999999999999999999999999 99999999999
Q ss_pred HHHHHHHh-------cCCCcchhhcccCCC
Q 021147 295 MLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 295 ~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
.|+++.+. ..|++..+...+|++
T Consensus 192 ~l~~~~~~~g~tiiivsH~~~~~~~~~d~i 221 (265)
T TIGR02769 192 LLRKLQQAFGTAYLFITHDLRLVQSFCQRV 221 (265)
T ss_pred HHHHHHHhcCcEEEEEeCCHHHHHHHhcEE
Confidence 99998653 456677776666663
No 138
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-36 Score=279.40 Aligned_cols=197 Identities=14% Similarity=0.161 Sum_probs=155.2
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
..+|+++||++.|++. .+ |+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 9 ~~~l~i~~l~~~~~~~-~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~--- 74 (265)
T PRK10575 9 DTTFALRNVSFRVPGR-TL-----LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP-----PSEGEILLDAQP--- 74 (265)
T ss_pred CceEEEeeEEEEECCE-EE-----EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCEe---
Confidence 3579999999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-C----CChHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-G----DSDVEKQY 223 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~----~~~~~~~~ 223 (317)
+...+...+++. ++|++|++.++ ..+|+.+|+.+..... . ......++
T Consensus 75 -------------------~~~~~~~~~~~~-------i~~v~q~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 127 (265)
T PRK10575 75 -------------------LESWSSKAFARK-------VAYLPQQLPAA-EGMTVRELVAIGRYPWHGALGRFGAADREK 127 (265)
T ss_pred -------------------hhhCCHHHHhhh-------eEEeccCCCCC-CCccHHHHHHhCcccccccccCCCHHHHHH
Confidence 333444444444 99999987654 3579999998642111 0 11223455
Q ss_pred HHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 224 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 224 ~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
+.++++.+++... . +... .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|.++.+.
T Consensus 128 ~~~~l~~~~l~~~--~-~~~~--------~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~ 196 (265)
T PRK10575 128 VEEAISLVGLKPL--A-HRLV--------DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE 196 (265)
T ss_pred HHHHHHHcCCHHH--h-cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 6778888887321 1 2223 6899999999999999999999999999999 9999999999999998643
Q ss_pred -------cCCCcchhhcccCCC
Q 021147 303 -------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -------~~~~~~~~~~~~~~~ 317 (317)
..|++..+.+.+|+|
T Consensus 197 ~~~tiii~sH~~~~i~~~~d~i 218 (265)
T PRK10575 197 RGLTVIAVLHDINMAARYCDYL 218 (265)
T ss_pred cCCEEEEEeCCHHHHHHhCCEE
Confidence 456677777777764
No 139
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-36 Score=274.78 Aligned_cols=201 Identities=18% Similarity=0.193 Sum_probs=151.4
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||++.|++. .+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++...
T Consensus 2 ~l~~~~l~~~~~~~-~i-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~-- 68 (242)
T PRK11124 2 SIQLNGINCFYGAH-QA-----LFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM-----PRSGTLNIAGNHFDF-- 68 (242)
T ss_pred EEEEEeeEEEECCe-ee-----EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEeccc--
Confidence 58999999999754 34 999999999999999999999999999999999999 999999999975100
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhh-cc-CCCChHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK-SM-EGDSDVEKQYNQIVA 228 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~-~~-~~~~~~~~~~~~~~a 228 (317)
.. .........+++. ++|++|++.++. .+|+.+|+.+.. .. ........+++.+++
T Consensus 69 -------------~~-~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l 126 (242)
T PRK11124 69 -------------SK-TPSDKAIRELRRN-------VGMVFQQYNLWP-HLTVQQNLIEAPCRVLGLSKDQALARAEKLL 126 (242)
T ss_pred -------------cc-ccchhhHHHHHhh-------eEEEecCccccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 00 0001112233333 999999987554 479999997432 11 111122344567788
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.++++... +... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 127 ~~~gl~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii 195 (242)
T PRK11124 127 ERLRLKPYA---DRFP--------LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQV 195 (242)
T ss_pred HHcCChhhh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEE
Confidence 888874221 2223 6899999999999999999999999999999 9999999999999987542
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|+...+.+.+||+
T Consensus 196 ~~sh~~~~~~~~~d~i 211 (242)
T PRK11124 196 IVTHEVEVARKTASRV 211 (242)
T ss_pred EEeCCHHHHHHhcCEE
Confidence 456666666666653
No 140
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-36 Score=286.86 Aligned_cols=208 Identities=15% Similarity=0.124 Sum_probs=159.9
Q ss_pred CCceEEEeEEEEcCCCCc----cccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 69 GSLTDAKNKILSYTPGAW----IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~----~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
.++|+++||++.|+.... ...+.+|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~-----p~~G~i~~~g~ 77 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET-----PTGGELYYQGQ 77 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCcEEEECCE
Confidence 357999999999963110 000123999999999999999999999999999999999999 99999999998
Q ss_pred cCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhcc-C-CCChHHH
Q 021147 145 VGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSM-E-GDSDVEK 221 (317)
Q Consensus 145 ~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~-~-~~~~~~~ 221 (317)
+ +..++...++. +...|+|+||++. .++..+++.+++...... . .......
T Consensus 78 ~----------------------l~~~~~~~~~~----~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~ 131 (327)
T PRK11308 78 D----------------------LLKADPEAQKL----LRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERR 131 (327)
T ss_pred E----------------------cCcCCHHHHHH----HhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHH
Confidence 6 44444333221 1234999999984 466678999988643221 1 1223345
Q ss_pred HHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 222 QYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 222 ~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+++.++++.++++... .+.++ .+|||||+||++|||||+.+|+++|+||||+ ||+.++..+.++|+++.
T Consensus 132 ~~~~~~l~~~gL~~~~-~~~~p---------~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~ 201 (327)
T PRK11308 132 EKALAMMAKVGLRPEH-YDRYP---------HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQ 201 (327)
T ss_pred HHHHHHHHHCCCChHH-hcCCC---------ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence 6678889999984211 12344 6999999999999999999999999999999 99999999999999986
Q ss_pred Hh-------cCCCcchhhcccCCC
Q 021147 301 EH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 301 ~~-------~~~~~~~~~~~~~~~ 317 (317)
+. ..|++..+..++|||
T Consensus 202 ~~~g~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 202 QELGLSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred HHcCCEEEEEeCCHHHHHHhCCEE
Confidence 54 567788888888875
No 141
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-36 Score=277.32 Aligned_cols=203 Identities=19% Similarity=0.208 Sum_probs=153.9
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++|++++|++. .+ |+|+||+|++||+++|+|+||||||||+|+|+|+++|....|++|+|+++|++
T Consensus 5 ~~~l~~~~l~~~~~~~-~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~--- 75 (254)
T PRK14273 5 EAIIETENLNLFYTDF-KA-----LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKN--- 75 (254)
T ss_pred CceEEEeeeEEEeCCc-ee-----ecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEe---
Confidence 4589999999999754 34 99999999999999999999999999999999999832212369999999975
Q ss_pred eeEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC--CChHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG--DSDVEKQYN 224 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~--~~~~~~~~~ 224 (317)
+.. .+...+++. |+|++|++.++. .|+++|+.+...... ......+++
T Consensus 76 -------------------i~~~~~~~~~~~~~-------i~~v~q~~~~~~--~tv~eni~~~~~~~~~~~~~~~~~~~ 127 (254)
T PRK14273 76 -------------------IYSNNFDILELRRK-------IGMVFQTPNPFL--MSIYDNISYGPKIHGTKDKKKLDEIV 127 (254)
T ss_pred -------------------cccccccHHHHhhc-------eEEEeecccccc--CcHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 221 122334444 999999987763 799999987542211 112234556
Q ss_pred HHHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 225 QIVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 225 ~~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.++++.+++.. .... +... .+|||||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 128 ~~~l~~~~l~~~l~~~~-~~~~--------~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 198 (254)
T PRK14273 128 EQSLKKSALWNEVKDKL-NTNA--------LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE 198 (254)
T ss_pred HHHHHHhCCchhhHHHH-hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc
Confidence 67778877621 0111 2222 6899999999999999999999999999999 999999999999999853
Q ss_pred h-----cCCCcchhhcccCCC
Q 021147 302 H-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~-----~~~~~~~~~~~~~~~ 317 (317)
. ..|++..+...+||+
T Consensus 199 ~~tvii~sH~~~~~~~~~d~i 219 (254)
T PRK14273 199 SYTIIIVTHNMQQAGRISDRT 219 (254)
T ss_pred CCEEEEEeCCHHHHHHhCCEE
Confidence 1 556666666677764
No 142
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-36 Score=286.91 Aligned_cols=207 Identities=15% Similarity=0.205 Sum_probs=158.1
Q ss_pred CCCceEEEeEEEEcCCC-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccC
Q 021147 68 IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~ 146 (317)
..++|+++|++++|.+. ..+ |+|+||+|++||++||+|+||||||||+++|+|++++....|++|+|.++|++
T Consensus 77 ~~~~i~~~nls~~y~~~~~~~-----L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~- 150 (329)
T PRK14257 77 HANVFEIRNFNFWYMNRTKHV-----LHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTN- 150 (329)
T ss_pred cCceEEEEeeEEEecCCCcee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE-
Confidence 34689999999999643 233 99999999999999999999999999999999999732222679999999986
Q ss_pred ceeeEecccCCCCcccccceeec--cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-C-ChHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-D-SDVEKQ 222 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~-~~~~~~ 222 (317)
+. ..+...+++. ++|+||++.+|+ .|+++|+.++..+.. . .....+
T Consensus 151 ---------------------i~~~~~~~~~lr~~-------i~~v~q~~~~~~--~ti~eNi~~~~~~~~~~~~~~~~~ 200 (329)
T PRK14257 151 ---------------------TRSKKISSLELRTR-------IGMVFQKPTPFE--MSIFDNVAYGPRNNGINDRKILEK 200 (329)
T ss_pred ---------------------ccccccchHhhhcc-------EEEEecCCccCC--CcHHHHHHhHHHhcCCChHHHHHH
Confidence 32 2233344444 999999998775 599999997643221 1 111223
Q ss_pred HHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 223 ~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.+.++++.++++. +....+.+++ ..|||||+||++||||++.+|+++||||||+ ||+.+...+.+.|+++.+
T Consensus 201 ~~~~~l~~~~L~~-----~l~~~~~~~~--~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~ 273 (329)
T PRK14257 201 IVEKSLKSAALWD-----EVKDDLDKAG--NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK 273 (329)
T ss_pred HHHHHHHHcCCcc-----hhhhhhhCCc--ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc
Confidence 3566777777531 1122334445 7999999999999999999999999999999 999999999999998764
Q ss_pred h-----cCCCcchhhcccCCC
Q 021147 302 H-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~-----~~~~~~~~~~~~~~~ 317 (317)
. ..|++..+.+.+|||
T Consensus 274 ~~Tii~iTH~l~~i~~~~Dri 294 (329)
T PRK14257 274 KYSIIIVTHSMAQAQRISDET 294 (329)
T ss_pred CCEEEEEeCCHHHHHHhCCEE
Confidence 3 456777777777775
No 143
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-36 Score=275.90 Aligned_cols=204 Identities=17% Similarity=0.197 Sum_probs=153.8
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+.+|+++||++.|++. .+ |+|+||+|++||+++|+||||||||||+++|+|+++|+...|++|+|+++|++
T Consensus 2 ~~~l~~~~l~~~~~~~-~~-----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~--- 72 (253)
T PRK14267 2 KFAIETVNLRVYYGSN-HV-----IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRN--- 72 (253)
T ss_pred cceEEEEeEEEEeCCe-ee-----eecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEE---
Confidence 3579999999999754 34 99999999999999999999999999999999999821111259999999986
Q ss_pred eeEecccCCCCcccccceeec--cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC---CChHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG---DSDVEKQY 223 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~---~~~~~~~~ 223 (317)
+. ..+...+++. ++|++|++.++. .+|+.+|+.+...... ......++
T Consensus 73 -------------------i~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~ 125 (253)
T PRK14267 73 -------------------IYSPDVDPIEVRRE-------VGMVFQYPNPFP-HLTIYDNVAIGVKLNGLVKSKKELDER 125 (253)
T ss_pred -------------------ccccccChHHHhhc-------eeEEecCCccCC-CCcHHHHHHHHHHhcCccCCHHHHHHH
Confidence 32 1223334444 999999987654 4799999987532111 11223345
Q ss_pred HHHHHHHcCCCcc--cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 224 NQIVATTFNCPYL--SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 224 ~~~~a~~~~l~~~--~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+.++++.+++... ... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.
T Consensus 126 ~~~~l~~~~l~~~~~~~~-~~~~--------~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 196 (253)
T PRK14267 126 VEWALKKAALWDEVKDRL-NDYP--------SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELK 196 (253)
T ss_pred HHHHHHHcCCccchhhhh-ccCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 6677888776311 111 2222 7899999999999999999999999999999 99999999999999975
Q ss_pred Hh-----cCCCcchhhcccCCC
Q 021147 301 EH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 301 ~~-----~~~~~~~~~~~~~~~ 317 (317)
+. ..|+...+...+|||
T Consensus 197 ~~~tiii~sH~~~~~~~~~d~i 218 (253)
T PRK14267 197 KEYTIVLVTHSPAQAARVSDYV 218 (253)
T ss_pred hCCEEEEEECCHHHHHhhCCEE
Confidence 32 456666667777764
No 144
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=4e-36 Score=278.51 Aligned_cols=199 Identities=15% Similarity=0.103 Sum_probs=153.4
Q ss_pred CCceEEEeEEEEcCCC--------CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEE
Q 021147 69 GSLTDAKNKILSYTPG--------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 140 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~--------~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~ 140 (317)
.++|+++||+++|+.. ..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~-----l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~ 71 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEA-----VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-----PTSGELL 71 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccce-----eeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCCCEEE
Confidence 3579999999999631 223 999999999999999999999999999999999999 9999999
Q ss_pred ECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhccC--CCC
Q 021147 141 YNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSME--GDS 217 (317)
Q Consensus 141 i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~~--~~~ 217 (317)
++|.+ +........++. ++|+||++. .+....|+.+|+.+..... ...
T Consensus 72 ~~g~~----------------------~~~~~~~~~~~~-------i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~ 122 (267)
T PRK15112 72 IDDHP----------------------LHFGDYSYRSQR-------IRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEP 122 (267)
T ss_pred ECCEE----------------------CCCCchhhHhcc-------EEEEecCchhhcCcchhHHHHHHHHHHhccCCCH
Confidence 99976 322222222233 999999875 2444568899987643211 111
Q ss_pred hHHHHHHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHH
Q 021147 218 DVEKQYNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDM 295 (317)
Q Consensus 218 ~~~~~~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~ 295 (317)
....+++.++++.+++. ... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.
T Consensus 123 ~~~~~~~~~~l~~~~l~~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~ 191 (267)
T PRK15112 123 EQREKQIIETLRQVGLLPDHA---SYYP--------HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINL 191 (267)
T ss_pred HHHHHHHHHHHHHcCCChHHH---hcCc--------hhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 22345567889998873 221 2233 6899999999999999999999999999999 999999999999
Q ss_pred HHHHHHh-------cCCCcchhhcccCCC
Q 021147 296 LRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 296 l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
|+++.+. ..|++..+...+|+|
T Consensus 192 l~~~~~~~g~tviivsH~~~~~~~~~d~i 220 (267)
T PRK15112 192 MLELQEKQGISYIYVTQHLGMMKHISDQV 220 (267)
T ss_pred HHHHHHHcCcEEEEEeCCHHHHHHhcCEE
Confidence 9998643 456777777777764
No 145
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.5e-36 Score=261.49 Aligned_cols=176 Identities=18% Similarity=0.160 Sum_probs=146.6
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||.+++|.|.|+.... ..+++|++||++||+||||||||||+++|+|+.. |.+|+|+++|++
T Consensus 1 ~l~L~~V~~~y~~~~~--------~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~-----P~~G~i~i~g~d----- 62 (231)
T COG3840 1 MLALDDVRFSYGHLPM--------RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET-----PASGEILINGVD----- 62 (231)
T ss_pred CccccceEEeeCcceE--------EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC-----CCCceEEEcCee-----
Confidence 5788999999965432 4899999999999999999999999999999999 999999999987
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc-CCCChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM-EGDSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~-~~~~~~~~~~~~~~a~ 229 (317)
....++.+ +- ++++||+..+|. .+||.+|+.++... -......++++..++.
T Consensus 63 -----------------~t~~~P~~--RP-------VSmlFQEnNLFa-HLtV~qNigLGl~P~LkL~a~~r~~v~~aa~ 115 (231)
T COG3840 63 -----------------HTASPPAE--RP-------VSMLFQENNLFA-HLTVAQNIGLGLSPGLKLNAEQREKVEAAAA 115 (231)
T ss_pred -----------------cCcCCccc--CC-------hhhhhhccccch-hhhhhhhhcccCCcccccCHHHHHHHHHHHH
Confidence 33333322 11 888999988776 79999999987533 3344567888999999
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
.+|+.- +.+..+ .+||||||||+++||+++++-++++||||+| |||.-+.....++.+++..
T Consensus 116 ~vGl~~--~~~RLP---------~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E 178 (231)
T COG3840 116 QVGLAG--FLKRLP---------GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDE 178 (231)
T ss_pred HhChhh--HhhhCc---------cccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHh
Confidence 999831 122344 4899999999999999999999999999999 9999999999999998754
No 146
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-36 Score=276.82 Aligned_cols=197 Identities=19% Similarity=0.223 Sum_probs=152.7
Q ss_pred CceEEEeEEEEcCCCC-ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 70 SLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~-~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
++|+++|+++.|++.. .+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 6 ~~l~i~~l~~~~~~~~~~~-----l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~--- 72 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFT-----LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK-----VKSGEIFYNNQA--- 72 (269)
T ss_pred ceEEEEEEEEEcCCCCCcc-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEE---
Confidence 4799999999997532 23 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC-ChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD-SDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~ 227 (317)
+...+...+++. ++|++|++..+....++.+|+.+....... .....+++.++
T Consensus 73 -------------------~~~~~~~~~~~~-------i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (269)
T PRK13648 73 -------------------ITDDNFEKLRKH-------IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEA 126 (269)
T ss_pred -------------------CCcCCHHHHHhh-------eeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHH
Confidence 434444455555 999999985223346889999775322111 12234456778
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++.... +... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 127 l~~~~l~~~~---~~~~--------~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~t 195 (269)
T PRK13648 127 LKQVDMLERA---DYEP--------NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNIT 195 (269)
T ss_pred HHHcCCchhh---hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 8888873211 1222 6899999999999999999999999999999 9999999999999987643
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|+...+.. +|||
T Consensus 196 iiivtH~~~~~~~-~d~i 212 (269)
T PRK13648 196 IISITHDLSEAME-ADHV 212 (269)
T ss_pred EEEEecCchHHhc-CCEE
Confidence 3355555554 6653
No 147
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-36 Score=279.10 Aligned_cols=195 Identities=14% Similarity=0.194 Sum_probs=151.3
Q ss_pred eEEEeEEEEcCCCC----ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 72 TDAKNKILSYTPGA----WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 72 I~~~nls~~y~~~~----~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
|+++||+++|++.. .+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 3 l~~~~l~~~~~~~~~~~~~~-----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~-- 70 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRA-----LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV-----PTQGSVRVDDTL-- 70 (280)
T ss_pred EEEEEEEEEcCCCCccccce-----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE--
Confidence 89999999997531 23 999999999999999999999999999999999999 999999999976
Q ss_pred eeeEecccCCCCcccccceeecc----CChHHHHHHHHHhhhhcccccccc--ccccchhhHHHHHHhhhcc-CCCChHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRR----SDSSSLRNRMRCKAHKIGCEPSVI--RKVNFVIFVVDGLAVLKSM-EGDSDVE 220 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~----~~~~~~r~~~~~~~~~ig~v~Q~~--~~~~~~~tv~eni~~~~~~-~~~~~~~ 220 (317)
+.. .+...+++. |+|++|++ .++. .|+.+|+.+.... .......
T Consensus 71 --------------------i~~~~~~~~~~~~~~~-------i~~~~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~ 121 (280)
T PRK13649 71 --------------------ITSTSKNKDIKQIRKK-------VGLVFQFPESQLFE--ETVLKDVAFGPQNFGVSQEEA 121 (280)
T ss_pred --------------------ccccccccCHHHHHhh-------eEEEeeChhhhhcc--ccHHHHHHHHHHHcCCCHHHH
Confidence 222 123344444 99999987 3443 5999999875322 1112223
Q ss_pred HHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 221 KQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 221 ~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
.+++.++++.+++.... . .... .+||+||+||+++|||++.+|+++||||||+ ||+.+++.+.+.|+++
T Consensus 122 ~~~~~~~l~~~~l~~~~-~-~~~~--------~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 191 (280)
T PRK13649 122 EALAREKLALVGISESL-F-EKNP--------FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKL 191 (280)
T ss_pred HHHHHHHHHHcCCChhh-h-hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 34566777888873111 1 2333 6899999999999999999999999999999 9999999999999988
Q ss_pred HHh------cCCCcchhhcccCCC
Q 021147 300 LEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 300 ~~~------~~~~~~~~~~~~~~~ 317 (317)
.+. ..|+...+...+|++
T Consensus 192 ~~~~~tiiivsH~~~~~~~~~d~i 215 (280)
T PRK13649 192 HQSGMTIVLVTHLMDDVANYADFV 215 (280)
T ss_pred HHCCCEEEEEeccHHHHHHhCCEE
Confidence 642 456666666667764
No 148
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.4e-37 Score=269.82 Aligned_cols=198 Identities=19% Similarity=0.232 Sum_probs=160.9
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
++.+.++|+.++|+... + +++|||++++||+++|.|||||||||.+.++.|+.+ |++|+|++||.+
T Consensus 2 ~~~L~a~~l~K~y~kr~-V-----v~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~-----~d~G~i~ld~~d--- 67 (243)
T COG1137 2 MSTLVAENLAKSYKKRK-V-----VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR-----PDSGKILLDDED--- 67 (243)
T ss_pred CcEEEehhhhHhhCCee-e-----eeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe-----cCCceEEECCcc---
Confidence 46799999999997664 4 999999999999999999999999999999999999 999999999987
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CCh--HHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSD--VEKQYNQ 225 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~--~~~~~~~ 225 (317)
++.++.....+. .|||+||++..|- .+||.||+........ +.+ ..+.+..
T Consensus 68 -------------------iT~lPm~~RArl------GigYLpQE~SIFr-~LtV~dNi~~vlE~~~~d~~~~~~~~~l~ 121 (243)
T COG1137 68 -------------------ITKLPMHKRARL------GIGYLPQEASIFR-KLTVEDNIMAVLEIREKDLKKAERKEELD 121 (243)
T ss_pred -------------------cccCChHHHhhc------CcccccccchHhh-cCcHHHHHHHHHhhhhcchhHHHHHHHHH
Confidence 556664332222 3999999998776 5999999976543322 223 2333466
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++++.+.+.... +... .+||||||.|+.|||||+.+|+.++||||++ .||.+-..++++++.+...
T Consensus 122 ~LL~ef~i~hlr--~~~a---------~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgi 190 (243)
T COG1137 122 ALLEEFHITHLR--DSKA---------YSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGI 190 (243)
T ss_pred HHHHHhchHHHh--cCcc---------cccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCc
Confidence 888888873222 1222 6899999999999999999999999999999 9999999999999998754
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
.|||..---.+|||+
T Consensus 191 GvLITDHNVREtL~i~dRa 209 (243)
T COG1137 191 GVLITDHNVRETLDICDRA 209 (243)
T ss_pred eEEEccccHHHHHhhhheE
Confidence 678877777777763
No 149
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-36 Score=286.60 Aligned_cols=209 Identities=16% Similarity=0.147 Sum_probs=159.5
Q ss_pred CCceEEEeEEEEcCCC---CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 69 GSLTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~---~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
+++|+++||++.|+.. ..+ |+||||+|.+||+++|+|+||||||||+++|+|+++|. ..|++|+|+++|++
T Consensus 1 ~~~L~v~~l~~~y~~~~~~~~~-----l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~-~~~~~G~i~~~g~~ 74 (330)
T PRK15093 1 MPLLDIRNLTIEFKTSDGWVKA-----VDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDN-WRVTADRMRFDDID 74 (330)
T ss_pred CCeEEEeeeEEEEeCCCCCEEE-----EeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCC-CCCcceEEEECCEE
Confidence 3579999999999531 223 99999999999999999999999999999999998631 12589999999986
Q ss_pred CceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhcccccccccc-ccchhhHHHHHHhhhc---cCC----CC
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK-VNFVIFVVDGLAVLKS---MEG----DS 217 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~-~~~~~tv~eni~~~~~---~~~----~~ 217 (317)
+..++...++.. ..+.|+|+||++.. ++..+||.+++..... ... ..
T Consensus 75 ----------------------i~~~~~~~~~~~---~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~ 129 (330)
T PRK15093 75 ----------------------LLRLSPRERRKL---VGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRF 129 (330)
T ss_pred ----------------------CCcCCHHHHHHH---hCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccH
Confidence 444444433221 11249999999863 5667889999864311 111 11
Q ss_pred hHHHHHHHHHHHHcCCCcc-cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHH
Q 021147 218 DVEKQYNQIVATTFNCPYL-SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDM 295 (317)
Q Consensus 218 ~~~~~~~~~~a~~~~l~~~-~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~ 295 (317)
....+++.++++.++++.. ...+.++ .+|||||+||++|||||+.+|+++|+||||+ ||+.++..+.++
T Consensus 130 ~~~~~~~~~~L~~~gL~~~~~~~~~~p---------~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~l 200 (330)
T PRK15093 130 GWRKRRAIELLHRVGIKDHKDAMRSFP---------YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRL 200 (330)
T ss_pred HHHHHHHHHHHHHCCCCChHHHHhCCc---------hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHH
Confidence 2334567788999998421 1122444 6999999999999999999999999999999 999999999999
Q ss_pred HHHHHHh-------cCCCcchhhcccCCC
Q 021147 296 LRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 296 l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
|+++.+. ..|++..+..++|||
T Consensus 201 L~~l~~~~g~tii~itHdl~~v~~~~dri 229 (330)
T PRK15093 201 LTRLNQNNNTTILLISHDLQMLSQWADKI 229 (330)
T ss_pred HHHHHHhcCCEEEEEECCHHHHHHhCCEE
Confidence 9998653 457888888888875
No 150
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-36 Score=279.45 Aligned_cols=197 Identities=15% Similarity=0.201 Sum_probs=153.0
Q ss_pred CceEEEeEEEEcCCC-----CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 70 SLTDAKNKILSYTPG-----AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 70 ~~I~~~nls~~y~~~-----~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
+||+++||+++|++. ..+ |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~v-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~i~g~ 72 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLA-----LDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI-----PSEGKVYVDGL 72 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcce-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCE
Confidence 579999999999642 223 999999999999999999999999999999999999 99999999997
Q ss_pred cCceeeEecccCCCCcccccceeeccCC-hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHH
Q 021147 145 VGDGTYFLQEYTIPRGVRHGELVIRRSD-SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQ 222 (317)
Q Consensus 145 ~~~~~~~~Q~~~l~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~ 222 (317)
+ +.... ...+++. +||+||++..+....++.+|+.+...... ......+
T Consensus 73 ~----------------------i~~~~~~~~~~~~-------i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~ 123 (280)
T PRK13633 73 D----------------------TSDEENLWDIRNK-------AGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRE 123 (280)
T ss_pred e----------------------ccccccHHHHhhh-------eEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHH
Confidence 6 32221 2233444 99999997532223589999987542211 1223345
Q ss_pred HHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 223 ~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
++.++++.+++.... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 124 ~~~~~l~~~gL~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~ 192 (280)
T PRK13633 124 RVDESLKKVGMYEYR---RHAP--------HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNK 192 (280)
T ss_pred HHHHHHHHCCCHhHh---hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 677888888874221 2233 6999999999999999999999999999999 999999999999999864
Q ss_pred h-------cCCCcchhhcccCCC
Q 021147 302 H-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~-------~~~~~~~~~~~~~~~ 317 (317)
. ..|++..+.. +||+
T Consensus 193 ~~g~tillvtH~~~~~~~-~d~v 214 (280)
T PRK13633 193 KYGITIILITHYMEEAVE-ADRI 214 (280)
T ss_pred hcCCEEEEEecChHHHhc-CCEE
Confidence 3 4466666654 6664
No 151
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-36 Score=279.35 Aligned_cols=197 Identities=16% Similarity=0.204 Sum_probs=154.1
Q ss_pred CceEEEeEEEEcCCC-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcC---cEEEECccc
Q 021147 70 SLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER---AQVTYNSSV 145 (317)
Q Consensus 70 ~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~---G~I~i~g~~ 145 (317)
.+|+++|+++.|++. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++ |+|.++|.+
T Consensus 4 ~~l~i~~l~~~~~~~~~~~-----l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~-----p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPA-----LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL-----PDDNPNSKITVDGIT 73 (282)
T ss_pred ceEEEEEEEEEcCCCCccc-----eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-----CCCCCCcEEEECCEE
Confidence 479999999999643 233 999999999999999999999999999999999999 877 899999986
Q ss_pred CceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC-ChHHHHHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD-SDVEKQYN 224 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~-~~~~~~~~ 224 (317)
+.......++++ +||++|++..+....|+.+|+.+....... .....+++
T Consensus 74 ----------------------~~~~~~~~~~~~-------ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~ 124 (282)
T PRK13640 74 ----------------------LTAKTVWDIREK-------VGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV 124 (282)
T ss_pred ----------------------CCcCCHHHHHhh-------eEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHH
Confidence 333343444444 999999985333357999999875432222 22334567
Q ss_pred HHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 225 QIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 225 ~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
.++++.+++.... +... ..||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 125 ~~~l~~~~L~~~~---~~~~--------~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~ 193 (282)
T PRK13640 125 RDVLADVGMLDYI---DSEP--------ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKN 193 (282)
T ss_pred HHHHHHCCChhHh---cCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc
Confidence 7889998874221 2223 6999999999999999999999999999999 9999999999999988643
Q ss_pred ------cCCCcchhhcccCCC
Q 021147 303 ------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ------~~~~~~~~~~~~~~~ 317 (317)
..|++..+. .+||+
T Consensus 194 g~tvli~tH~~~~~~-~~d~i 213 (282)
T PRK13640 194 NLTVISITHDIDEAN-MADQV 213 (282)
T ss_pred CCEEEEEecCHHHHH-hCCEE
Confidence 345666653 46653
No 152
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-36 Score=276.47 Aligned_cols=187 Identities=14% Similarity=0.149 Sum_probs=151.3
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++||+++|++. .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+
T Consensus 10 ~~~l~i~~l~~~~~~~-~i-----l~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~--- 75 (257)
T PRK11247 10 GTPLLLNAVSKRYGER-TV-----LNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET-----PSAGELLAGTAP--- 75 (257)
T ss_pred CCcEEEEEEEEEECCc-ce-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEE---
Confidence 3579999999999754 34 999999999999999999999999999999999999 999999998864
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
+. .+++. ++|++|++.+++ ..|+.+|+.+... . ...+++.+++
T Consensus 76 -------------------~~-----~~~~~-------i~~v~q~~~l~~-~~tv~enl~~~~~--~---~~~~~~~~~l 118 (257)
T PRK11247 76 -------------------LA-----EARED-------TRLMFQDARLLP-WKKVIDNVGLGLK--G---QWRDAALQAL 118 (257)
T ss_pred -------------------HH-----HhhCc-------eEEEecCccCCC-CCcHHHHHHhccc--c---hHHHHHHHHH
Confidence 21 22333 999999987554 4799999986421 1 1234567788
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++.... +... .+|||||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 119 ~~~gl~~~~---~~~~--------~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tv 187 (257)
T PRK11247 119 AAVGLADRA---NEWP--------AALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTV 187 (257)
T ss_pred HHcCChhHh---cCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 888874221 2233 6999999999999999999999999999999 9999999999999987543
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|+...+..++|+|
T Consensus 188 iivsHd~~~~~~~~d~i 204 (257)
T PRK11247 188 LLVTHDVSEAVAMADRV 204 (257)
T ss_pred EEEeCCHHHHHHhCCEE
Confidence 567777777777764
No 153
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=6e-36 Score=275.48 Aligned_cols=210 Identities=14% Similarity=0.161 Sum_probs=155.1
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+++|+++||++.|++. .+ |+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+...
T Consensus 3 ~~~l~~~~l~~~~~~~-~~-----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~ 71 (257)
T PRK10619 3 ENKLNVIDLHKRYGEH-EV-----LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGSIVVNGQTINL 71 (257)
T ss_pred CccEEEeeeEEEECCE-EE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEccc
Confidence 4579999999999754 34 999999999999999999999999999999999999 999999999975110
Q ss_pred eeEecccCCCCccccccee-eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhh-cc-CCCChHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELV-IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK-SM-EGDSDVEKQYNQ 225 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~-~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~-~~-~~~~~~~~~~~~ 225 (317)
+... .+... ........+++ .++|+||++.++. .+|+++|+.++. .. ........+++.
T Consensus 72 --~~~~--------~~~~~~~~~~~~~~~~~-------~i~~v~q~~~l~~-~~sv~enl~~~~~~~~~~~~~~~~~~~~ 133 (257)
T PRK10619 72 --VRDK--------DGQLKVADKNQLRLLRT-------RLTMVFQHFNLWS-HMTVLENVMEAPIQVLGLSKQEARERAV 133 (257)
T ss_pred --cccc--------ccccccccchHHHHHhh-------ceEEEecCcccCC-CCcHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 0000 00000 00001122333 3999999987665 479999997642 11 111223345677
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++++.+++.... . +... .+||+||+||+++|||++.+|+++||||||+ ||+.+++.+.+.|+++.+.
T Consensus 134 ~~l~~~gl~~~~-~-~~~~--------~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~ 203 (257)
T PRK10619 134 KYLAKVGIDERA-Q-GKYP--------VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGK 203 (257)
T ss_pred HHHHHcCCChhh-h-hCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCC
Confidence 888998874221 1 2223 6899999999999999999999999999999 9999999999999998643
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 204 tiiivsH~~~~~~~~~d~i 222 (257)
T PRK10619 204 TMVVVTHEMGFARHVSSHV 222 (257)
T ss_pred EEEEEeCCHHHHHHhcCEE
Confidence 456677777777764
No 154
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=6.4e-36 Score=265.89 Aligned_cols=187 Identities=16% Similarity=0.137 Sum_probs=146.9
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||++.|++.. + |+++||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 l~i~~l~~~~~~~~-~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~------ 63 (201)
T cd03231 1 LEADELTCERDGRA-L-----FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP-----PLAGRVLLNGGP------ 63 (201)
T ss_pred CEEEEEEEEeCCce-e-----eccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEe------
Confidence 57899999997543 3 999999999999999999999999999999999999 999999999975
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHc
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF 231 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~ 231 (317)
+.... ..+++. ++|++|++.++ ...|+++|+.+..... ..+++.++++.+
T Consensus 64 ----------------~~~~~-~~~~~~-------i~~~~q~~~~~-~~~tv~e~l~~~~~~~-----~~~~~~~~l~~~ 113 (201)
T cd03231 64 ----------------LDFQR-DSIARG-------LLYLGHAPGIK-TTLSVLENLRFWHADH-----SDEQVEEALARV 113 (201)
T ss_pred ----------------ccccc-HHhhhh-------eEEeccccccC-CCcCHHHHHHhhcccc-----cHHHHHHHHHHc
Confidence 22111 233344 99999987644 3579999998753211 234567788888
Q ss_pred CCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cC
Q 021147 232 NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------AD 304 (317)
Q Consensus 232 ~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~ 304 (317)
++.... ...+ .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+. ..
T Consensus 114 ~l~~~~---~~~~--------~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~s 182 (201)
T cd03231 114 GLNGFE---DRPV--------AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTT 182 (201)
T ss_pred CChhhh---cCch--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 874221 2233 6899999999999999999999999999999 9999999999999987543 34
Q ss_pred CCcchhhcccCC
Q 021147 305 RNLSCKSCARNK 316 (317)
Q Consensus 305 ~~~~~~~~~~~~ 316 (317)
|+.....+++++
T Consensus 183 H~~~~~~~~~~~ 194 (201)
T cd03231 183 HQDLGLSEAGAR 194 (201)
T ss_pred cCchhhhhccce
Confidence 444444445544
No 155
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=3.8e-36 Score=270.09 Aligned_cols=198 Identities=19% Similarity=0.218 Sum_probs=152.6
Q ss_pred ceEEEeEEEEcCCC-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 71 LTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 71 ~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.|+++|+++.|++. ..+ ++|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 2 ~l~~~~l~~~~~~~~~~~-----l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~---- 67 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPA-----LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK-----PTSGSVLLDGTD---- 67 (220)
T ss_pred eEEEEEEEEEcCCCCccc-----ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCeEEECCEE----
Confidence 38899999999653 233 999999999999999999999999999999999999 999999999975
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
+...+...+++. ++|++|++.++. .|+.+|+.+..... . .+.+.++++
T Consensus 68 ------------------~~~~~~~~~~~~-------i~~~~q~~~~~~--~tv~e~l~~~~~~~---~--~~~~~~~l~ 115 (220)
T cd03245 68 ------------------IRQLDPADLRRN-------IGYVPQDVTLFY--GTLRDNITLGAPLA---D--DERILRAAE 115 (220)
T ss_pred ------------------hHHCCHHHHHhh-------EEEeCCCCcccc--chHHHHhhcCCCCC---C--HHHHHHHHH
Confidence 333343334444 999999997665 49999997643211 1 233556677
Q ss_pred HcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 230 TFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 230 ~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
.+++. ...++.++.+.+.... .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 116 ~~~l~~~~~~~~~~~~~~~~~~~--~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii 193 (220)
T cd03245 116 LAGVTDFVNKHPNGLDLQIGERG--RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLI 193 (220)
T ss_pred HcCcHHHHHhccccccceecCCC--ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 77763 1223445555443333 6899999999999999999999999999999 9999999999999987542
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+ ..+|+|
T Consensus 194 ~~sH~~~~~-~~~d~v 208 (220)
T cd03245 194 IITHRPSLL-DLVDRI 208 (220)
T ss_pred EEeCCHHHH-HhCCEE
Confidence 34555554 466653
No 156
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-36 Score=275.37 Aligned_cols=197 Identities=11% Similarity=0.169 Sum_probs=151.1
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++||++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~-~~-----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~---- 68 (255)
T PRK11300 4 PLLSVSGLMMRFGGL-LA-----VNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK-----PTGGTILLRGQH---- 68 (255)
T ss_pred ceEEEeeEEEEECCE-EE-----EEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-----CCcceEEECCEE----
Confidence 479999999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC---------------
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME--------------- 214 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~--------------- 214 (317)
+...+....++ ..++|++|++.+++ .+|+.+|+.++....
T Consensus 69 ------------------~~~~~~~~~~~------~~i~~~~q~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~ 123 (255)
T PRK11300 69 ------------------IEGLPGHQIAR------MGVVRTFQHVRLFR-EMTVIENLLVAQHQQLKTGLFSGLLKTPAF 123 (255)
T ss_pred ------------------CCCCCHHHHHh------cCeEEeccCcccCC-CCcHHHHHHHhhhccccchhhhhhcccccc
Confidence 33333322221 13889999987554 579999998753110
Q ss_pred C-CChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHH
Q 021147 215 G-DSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELII 292 (317)
Q Consensus 215 ~-~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l 292 (317)
. ......+++.++++.+++.... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+
T Consensus 124 ~~~~~~~~~~~~~~l~~~gl~~~~---~~~~--------~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l 192 (255)
T PRK11300 124 RRAESEALDRAATWLERVGLLEHA---NRQA--------GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKEL 192 (255)
T ss_pred ccchhHHHHHHHHHHHhCChhhhh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHH
Confidence 0 0012224456677777763221 2333 6999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHh-------cCCCcchhhcccCCC
Q 021147 293 VDMLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 293 ~~~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
.+.|.++.+. ..|++..+...+|+|
T Consensus 193 ~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i 224 (255)
T PRK11300 193 DELIAELRNEHNVTVLLIEHDMKLVMGISDRI 224 (255)
T ss_pred HHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEE
Confidence 9999987543 345566666666653
No 157
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-36 Score=277.09 Aligned_cols=197 Identities=17% Similarity=0.206 Sum_probs=155.7
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
..+|+++||+++|++. .+ |+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 5 ~~~l~i~~l~~~~~~~-~~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~--- 70 (265)
T PRK10253 5 VARLRGEQLTLGYGKY-TV-----AENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT-----PAHGHVWLDGEH--- 70 (265)
T ss_pred ccEEEEEEEEEEECCE-EE-----eeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCcEEEECCEE---
Confidence 4579999999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhh-cc----CCCChHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK-SM----EGDSDVEKQY 223 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~-~~----~~~~~~~~~~ 223 (317)
+...+...++.. ++|+||++.++. .+|+.+|+.+.. .. ........++
T Consensus 71 -------------------~~~~~~~~~~~~-------i~~v~q~~~~~~-~~tv~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (265)
T PRK10253 71 -------------------IQHYASKEVARR-------IGLLAQNATTPG-DITVQELVARGRYPHQPLFTRWRKEDEEA 123 (265)
T ss_pred -------------------hhhCCHHHHhhh-------eEEeeccCcCCC-CCcHHHHHHhCcccccccccCCCHHHHHH
Confidence 434444444444 999999987554 579999998642 11 0111223445
Q ss_pred HHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 224 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 224 ~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
+.++++.+++.... .... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|.++.+.
T Consensus 124 ~~~~l~~~~l~~~~---~~~~--------~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~ 192 (265)
T PRK10253 124 VTKAMQATGITHLA---DQSV--------DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE 192 (265)
T ss_pred HHHHHHHcCCHHHh---cCCc--------ccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh
Confidence 67888888874211 2233 6999999999999999999999999999999 9999999999999998652
Q ss_pred -------cCCCcchhhcccCCC
Q 021147 303 -------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -------~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+||+
T Consensus 193 ~~~tiii~tH~~~~~~~~~d~i 214 (265)
T PRK10253 193 KGYTLAAVLHDLNQACRYASHL 214 (265)
T ss_pred cCCEEEEEeCCHHHHHHhCCEE
Confidence 446666666667764
No 158
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=4.2e-36 Score=267.04 Aligned_cols=195 Identities=17% Similarity=0.183 Sum_probs=147.8
Q ss_pred EEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEec
Q 021147 74 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQ 153 (317)
Q Consensus 74 ~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q 153 (317)
++||++.|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 i~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~-------- 61 (206)
T TIGR03608 1 LKNISKKFGDK-II-----LDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK-----FDSGQVYLNGKE-------- 61 (206)
T ss_pred CcceEEEECCE-EE-----EeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEE--------
Confidence 47999999754 34 999999999999999999999999999999999999 999999999975
Q ss_pred ccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHHcC
Q 021147 154 EYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTFN 232 (317)
Q Consensus 154 ~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~~~ 232 (317)
+..+...... ....+.++|++|++.+++ ..|+.+|+.+...... ......+++.++++.++
T Consensus 62 --------------~~~~~~~~~~---~~~~~~i~~~~q~~~~~~-~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 123 (206)
T TIGR03608 62 --------------TPPLNSKKAS---KFRREKLGYLFQNFALIE-NETVEENLDLGLKYKKLSKKEKREKKKEALEKVG 123 (206)
T ss_pred --------------ccccchhhHH---HHHHhCeeEEecchhhcc-CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 2222211100 011224999999987554 5799999987543221 12233456778888888
Q ss_pred CCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCC
Q 021147 233 CPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ADR 305 (317)
Q Consensus 233 l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~ 305 (317)
+.... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+. ..|
T Consensus 124 l~~~~---~~~~--------~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh 192 (206)
T TIGR03608 124 LNLKL---KQKI--------YELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTH 192 (206)
T ss_pred chhhh---cCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 74221 2233 6899999999999999999999999999999 9999999999999987642 345
Q ss_pred CcchhhcccCCC
Q 021147 306 NLSCKSCARNKV 317 (317)
Q Consensus 306 ~~~~~~~~~~~~ 317 (317)
+.... ..+|++
T Consensus 193 ~~~~~-~~~d~i 203 (206)
T TIGR03608 193 DPEVA-KQADRV 203 (206)
T ss_pred CHHHH-hhcCEE
Confidence 55544 345653
No 159
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-36 Score=274.32 Aligned_cols=202 Identities=16% Similarity=0.159 Sum_probs=153.0
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||+++|++. .+ |+++||+|++||+++|+|+||||||||+|+|+|++++....|++|+|.++|++
T Consensus 5 ~~l~~~~l~~~~~~~-~i-----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~---- 74 (253)
T PRK14242 5 PKMEARGLSFFYGDF-QA-----LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGEN---- 74 (253)
T ss_pred cEEEEeeeEEEECCe-ee-----ecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEE----
Confidence 579999999999754 34 99999999999999999999999999999999997411001579999999976
Q ss_pred eEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC--CChHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG--DSDVEKQYNQ 225 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~--~~~~~~~~~~ 225 (317)
+.. .+...+++. ++|++|++.++. .|+.+|+.+...... ......+++.
T Consensus 75 ------------------i~~~~~~~~~~~~~-------i~~v~q~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~ 127 (253)
T PRK14242 75 ------------------IYDPHVDVVELRRR-------VGMVFQKPNPFP--KSIFENVAYGLRVNGVKDKAYLAERVE 127 (253)
T ss_pred ------------------ccccccCHHHHhhc-------EEEEecCCCCCc--CcHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 322 222334444 999999987775 499999987532211 1123345667
Q ss_pred HHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 226 IVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 226 ~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
++++.+++.. .... +... .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 128 ~~l~~~~l~~~~~~~~-~~~~--------~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 198 (253)
T PRK14242 128 RSLRHAALWDEVKDRL-HESA--------LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKAR 198 (253)
T ss_pred HHHHHcCCchhhhHHh-hCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC
Confidence 7788888631 1111 2222 6899999999999999999999999999999 9999999999999987431
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+.+.+|||
T Consensus 199 ~tvii~tH~~~~~~~~~d~v 218 (253)
T PRK14242 199 YTIIIVTHNMQQAARVSDVT 218 (253)
T ss_pred CeEEEEEecHHHHHHhCCEE
Confidence 556666666777764
No 160
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=6.8e-36 Score=274.98 Aligned_cols=194 Identities=19% Similarity=0.197 Sum_probs=154.0
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++|+++.|++. .+ |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 2 l~~~~l~~~~~~~-~i-----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~------ 64 (256)
T TIGR03873 2 LRLSRVSWSAGGR-LI-----VDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR-----PDAGTVDLAGVD------ 64 (256)
T ss_pred ceEEeEEEEECCE-EE-----EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCEE------
Confidence 6899999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-c----CCCChHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-M----EGDSDVEKQYNQI 226 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~----~~~~~~~~~~~~~ 226 (317)
+...+...+++. ++|++|++..+ ..+|+.+|+.+... . ........+++.+
T Consensus 65 ----------------~~~~~~~~~~~~-------i~~~~q~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 120 (256)
T TIGR03873 65 ----------------LHGLSRRARARR-------VALVEQDSDTA-VPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDR 120 (256)
T ss_pred ----------------cccCCHHHHhhh-------eEEecccCccC-CCCCHHHHHHhcchhhhhhccCCCHHHHHHHHH
Confidence 444454444444 99999998533 35799999987531 1 1111223345677
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... .... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 121 ~l~~~~l~~~~---~~~~--------~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 189 (256)
T TIGR03873 121 ALARTELSHLA---DRDM--------STLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVT 189 (256)
T ss_pred HHHHcCcHhhh---cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCE
Confidence 88888873211 2233 6899999999999999999999999999999 9999999999999998643
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 190 iii~sH~~~~~~~~~d~i 207 (256)
T TIGR03873 190 VVAALHDLNLAASYCDHV 207 (256)
T ss_pred EEEEeCCHHHHHHhCCEE
Confidence 456777777777764
No 161
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-36 Score=279.68 Aligned_cols=203 Identities=15% Similarity=0.172 Sum_probs=151.7
Q ss_pred CceEEEeEEEEcCCCC----ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 70 SLTDAKNKILSYTPGA----WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~----~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
+.|+++||+++|++.. .+ |+|+||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|.+
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~i-----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~ 74 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKA-----LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII-----SETGQTIVGDYA 74 (289)
T ss_pred ceEEEEEEEEEeCCCCccccce-----eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEE
Confidence 4699999999997542 23 999999999999999999999999999999999999 999999999976
Q ss_pred CceeeEecccCCCCcccccceeeccC-ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC-hHHHHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVIRRS-DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS-DVEKQY 223 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~-~~~~~~ 223 (317)
.. . ..... +...+++. |+|++|++.......|+.+|+.+........ ....++
T Consensus 75 i~-----------------~-~~~~~~~~~~~~~~-------i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~ 129 (289)
T PRK13645 75 IP-----------------A-NLKKIKEVKRLRKE-------IGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKK 129 (289)
T ss_pred cc-----------------c-cccccccHHHHhcc-------EEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHH
Confidence 10 0 00011 22333434 9999998742222359999998754322111 222345
Q ss_pred HHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 224 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 224 ~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
+.++++.++++.. .. +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 130 ~~~ll~~~~L~~~-~~-~~~~--------~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~ 199 (289)
T PRK13645 130 VPELLKLVQLPED-YV-KRSP--------FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE 199 (289)
T ss_pred HHHHHHHcCCChh-Hh-cCCh--------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 5677788776311 11 2333 6999999999999999999999999999999 9999999999999988643
Q ss_pred -------cCCCcchhhcccCCC
Q 021147 303 -------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -------~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+||+
T Consensus 200 ~~~tiiiisH~~~~~~~~~d~i 221 (289)
T PRK13645 200 YKKRIIMVTHNMDQVLRIADEV 221 (289)
T ss_pred cCCEEEEEecCHHHHHHhCCEE
Confidence 446666666667764
No 162
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-36 Score=273.39 Aligned_cols=199 Identities=16% Similarity=0.195 Sum_probs=152.8
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||++.|++. .+ |+|+||+|++||+++|+|+||||||||+++|+|+++|.. |++|+|.++|++
T Consensus 2 ~~~~~~l~~~~~~~-~~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~--~~~G~i~~~g~~----- 68 (246)
T PRK14269 2 IAKTTNLNLFYGKK-QA-----LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIA--KIDGLVEIEGKD----- 68 (246)
T ss_pred ceeeeeeEEEECCE-ee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC--CCceEEEECCEe-----
Confidence 58999999999753 34 999999999999999999999999999999999985210 689999999986
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC---CChHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG---DSDVEKQYNQIV 227 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~ 227 (317)
+...+...+++. ++|+||++.+|+ .|+++|+.+...... .......++.++
T Consensus 69 -----------------i~~~~~~~~~~~-------i~~~~q~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~~ 122 (246)
T PRK14269 69 -----------------VKNQDVVALRKN-------VGMVFQQPNVFV--KSIYENISYAPKLHGMIKNKDEEEALVVDC 122 (246)
T ss_pred -----------------cccCCHHHHhhh-------EEEEecCCcccc--ccHHHHhhhHHhhcCcccChHHHHHHHHHH
Confidence 434444444444 999999998775 599999987532211 112234456778
Q ss_pred HHHcCCCcc--cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 228 ATTFNCPYL--SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 228 a~~~~l~~~--~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++.++++.. .+. +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|.++.+.
T Consensus 123 l~~~~l~~~~~~~~-~~~~--------~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~t 193 (246)
T PRK14269 123 LQKVGLFEEVKDKL-KQNA--------LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLS 193 (246)
T ss_pred HHHcCCChhhhHHh-cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCE
Confidence 888887311 111 1222 6899999999999999999999999999999 9999999999999987432
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|+++.+...+|||
T Consensus 194 iii~tH~~~~~~~~~d~i 211 (246)
T PRK14269 194 MIMVTHNMQQGKRVADYT 211 (246)
T ss_pred EEEEecCHHHHHhhCcEE
Confidence 345555555666653
No 163
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-36 Score=276.89 Aligned_cols=203 Identities=18% Similarity=0.203 Sum_probs=154.5
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
..+|+++||+++|++. .+ |+|+||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|++
T Consensus 11 ~~~l~i~nl~~~~~~~-~i-----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~--- 81 (269)
T PRK14259 11 NIIISLQNVTISYGTF-EA-----VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTD--- 81 (269)
T ss_pred CceEEEEeEEEEECCE-EE-----EcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE---
Confidence 4589999999999754 33 99999999999999999999999999999999998732112489999999976
Q ss_pred eeEecccCCCCcccccceeec--cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 226 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~ 226 (317)
+. ..+...+++. ++|+||++.++. .|+.+|+.+............+++.+
T Consensus 82 -------------------i~~~~~~~~~~~~~-------i~~v~q~~~l~~--~tv~enl~~~~~~~~~~~~~~~~~~~ 133 (269)
T PRK14259 82 -------------------LYDPRVDPVEVRRR-------IGMVFQQPNPFP--KSIYENIAFGARINGYTGDMDELVER 133 (269)
T ss_pred -------------------cccccCCHHHHhhc-------eEEEccCCccch--hhHHHHHhhhhhhcCCcHHHHHHHHH
Confidence 22 1233344444 999999987665 39999998754321111222345566
Q ss_pred HHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 227 VATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 227 ~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
+++.+++.. .... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.++|+++.+.
T Consensus 134 ~l~~~~l~~~l~~~~-~~~~--------~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~ 204 (269)
T PRK14259 134 SLRKAAVWDECKDKL-NESG--------YSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNF 204 (269)
T ss_pred HHHHhCCcchhhhhh-CCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCC
Confidence 777777521 1111 2222 6899999999999999999999999999999 9999999999999987532
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+||+
T Consensus 205 tiiivtH~~~~~~~~~d~i 223 (269)
T PRK14259 205 TIVIVTHNMQQAVRVSDMT 223 (269)
T ss_pred EEEEEeCCHHHHHHhcCEE
Confidence 556777777777764
No 164
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=5.5e-36 Score=271.00 Aligned_cols=192 Identities=14% Similarity=0.158 Sum_probs=147.7
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||++.|++. .+ |+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 l~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~------ 63 (230)
T TIGR03410 1 LEVSNLNVYYGQS-HI-----LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP-----VKSGSIRLDGED------ 63 (230)
T ss_pred CEEEeEEEEeCCe-EE-----ecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEE------
Confidence 5799999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHH-HHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSS-LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+...+... .++ .++|++|++.+++ .+|+.+|+.+........ ..+...++++.
T Consensus 64 ----------------~~~~~~~~~~~~-------~i~~~~q~~~~~~-~~tv~~~l~~~~~~~~~~--~~~~~~~~l~~ 117 (230)
T TIGR03410 64 ----------------ITKLPPHERARA-------GIAYVPQGREIFP-RLTVEENLLTGLAALPRR--SRKIPDEIYEL 117 (230)
T ss_pred ----------------CCCCCHHHHHHh-------CeEEeccCCcccC-CCcHHHHHHHHHHhcCcc--hHHHHHHHHHH
Confidence 33333322 222 3999999987654 579999998754321111 12223455555
Q ss_pred cC-CCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 231 FN-CPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 231 ~~-l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
++ +.... +..+ .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|.++.+.
T Consensus 118 ~~~l~~~~---~~~~--------~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 186 (230)
T TIGR03410 118 FPVLKEML---GRRG--------GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAIL 186 (230)
T ss_pred HHhHHHHh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEE
Confidence 54 22111 2233 7899999999999999999999999999999 9999999999999987642
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|+|
T Consensus 187 ~~sH~~~~~~~~~d~v 202 (230)
T TIGR03410 187 LVEQYLDFARELADRY 202 (230)
T ss_pred EEeCCHHHHHHhCCEE
Confidence 446666666667764
No 165
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-36 Score=276.57 Aligned_cols=204 Identities=15% Similarity=0.182 Sum_probs=155.4
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
..++|+++||++.|++. .+ |+|+||+|++|++++|+|+||||||||+++|+|+++|....|++|+|+++|++
T Consensus 16 ~~~~l~~~nl~~~~~~~-~i-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~-- 87 (267)
T PRK14235 16 TEIKMRARDVSVFYGEK-QA-----LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGED-- 87 (267)
T ss_pred CCceEEEEeEEEEECCE-EE-----EEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEE--
Confidence 35689999999999753 34 99999999999999999999999999999999999732112489999999976
Q ss_pred eeeEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC---CChHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG---DSDVEKQ 222 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~---~~~~~~~ 222 (317)
+.. .+...+++. ++|++|++.+++ .|+.+|+.+...... ......+
T Consensus 88 --------------------i~~~~~~~~~~~~~-------i~~v~q~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~ 138 (267)
T PRK14235 88 --------------------IYDPRLDVVELRAR-------VGMVFQKPNPFP--KSIYENVAYGPRIHGLARSKAELDE 138 (267)
T ss_pred --------------------CcccccchHHHhhc-------eEEEecCCCCCC--CcHHHHHHHHHHhcccccchHHHHH
Confidence 321 223334444 999999988775 399999987542211 1122345
Q ss_pred HHHHHHHHcCCCcc--cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCPYL--SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 223 ~~~~~a~~~~l~~~--~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
++.++++.+++... ... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++
T Consensus 139 ~~~~~l~~~~l~~~~~~~~-~~~~--------~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l 209 (267)
T PRK14235 139 IVETSLRKAGLWEEVKDRL-HEPG--------TGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL 209 (267)
T ss_pred HHHHHHHHcCCchhhhHHh-hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 56778888887321 011 2223 6899999999999999999999999999999 9999999999999987
Q ss_pred HHh-----cCCCcchhhcccCCC
Q 021147 300 LEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 300 ~~~-----~~~~~~~~~~~~~~~ 317 (317)
.+. ..|++..+.+.+|++
T Consensus 210 ~~~~tiiivtH~~~~~~~~~d~v 232 (267)
T PRK14235 210 RQNYTIVIVTHSMQQAARVSQRT 232 (267)
T ss_pred hcCCeEEEEEcCHHHHHhhCCEE
Confidence 532 456666666667764
No 166
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-36 Score=280.02 Aligned_cols=197 Identities=17% Similarity=0.144 Sum_probs=150.9
Q ss_pred EEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEe
Q 021147 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 152 (317)
Q Consensus 73 ~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~ 152 (317)
.++|+++.|++.. + |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 26 ~~~~~~~~~~~~~-i-----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~-----p~~G~i~i~g~~------- 87 (269)
T cd03294 26 SKEEILKKTGQTV-G-----VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE-----PTSGKVLIDGQD------- 87 (269)
T ss_pred hhhhhhhhcCCce-E-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEE-------
Confidence 5668888886543 3 999999999999999999999999999999999999 999999999976
Q ss_pred cccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHHc
Q 021147 153 QEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF 231 (317)
Q Consensus 153 Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~~ 231 (317)
+...+...++.. ..+.++|++|++.+++ .+|+.+|+.+...... ......+++.++++.+
T Consensus 88 ---------------~~~~~~~~~~~~---~~~~i~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~ 148 (269)
T cd03294 88 ---------------IAAMSRKELREL---RRKKISMVFQSFALLP-HRTVLENVAFGLEVQGVPRAEREERAAEALELV 148 (269)
T ss_pred ---------------ccccChhhhhhh---hcCcEEEEecCcccCC-CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Confidence 333333222110 0124999999987553 5799999987532211 1223345577788888
Q ss_pred CCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------c
Q 021147 232 NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-------A 303 (317)
Q Consensus 232 ~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-------~ 303 (317)
++.... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+. .
T Consensus 149 ~l~~~~---~~~~--------~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~ 217 (269)
T cd03294 149 GLEGWE---HKYP--------DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFI 217 (269)
T ss_pred CCHhHh---hCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 874221 2233 6899999999999999999999999999999 9999999999999988642 4
Q ss_pred CCCcchhhcccCCC
Q 021147 304 DRNLSCKSCARNKV 317 (317)
Q Consensus 304 ~~~~~~~~~~~~~~ 317 (317)
.|++..+...+|+|
T Consensus 218 tH~~~~~~~~~d~v 231 (269)
T cd03294 218 THDLDEALRLGDRI 231 (269)
T ss_pred eCCHHHHHHhcCEE
Confidence 46666666777764
No 167
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=7.4e-36 Score=278.16 Aligned_cols=196 Identities=15% Similarity=0.193 Sum_probs=159.6
Q ss_pred ceEEEeEEEEcCCC-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 71 LTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 71 ~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.|+++||+++|++. ..+ |+|+||+|++||+++|+|+||||||||+++|+|+++ + +|+|+++|.+
T Consensus 2 ~i~~~nls~~~~~~~~~~-----l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-----~-~G~I~i~g~~---- 66 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAV-----LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-----T-EGDIQIDGVS---- 66 (275)
T ss_pred eEEEEEEEEEeCCCCCcc-----eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-----C-CcEEEECCEE----
Confidence 48999999999642 333 999999999999999999999999999999999986 4 7999999986
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
+...+...+++. ++|+||++.+|+ .|+++|+...... ..+++.++++
T Consensus 67 ------------------i~~~~~~~lr~~-------i~~v~q~~~lf~--~tv~~nl~~~~~~------~~~~~~~~l~ 113 (275)
T cd03289 67 ------------------WNSVPLQKWRKA-------FGVIPQKVFIFS--GTFRKNLDPYGKW------SDEEIWKVAE 113 (275)
T ss_pred ------------------hhhCCHHHHhhh-------EEEECCCcccch--hhHHHHhhhccCC------CHHHHHHHHH
Confidence 545566666666 999999998886 4999999632211 1245778888
Q ss_pred HcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 230 TFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 230 ~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
.+++. ...++.++.+.+++.| ..||+||+||+++|||++.+|+++||||||+ ||+.++..+++.|+++...
T Consensus 114 ~~gL~~~~~~~p~~l~~~~~~~g--~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii 191 (275)
T cd03289 114 EVGLKSVIEQFPGQLDFVLVDGG--CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVI 191 (275)
T ss_pred HcCCHHHHHhCcccccceecCCC--CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88884 3346778888888888 8999999999999999999999999999999 9999999999999986421
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+.. +|||
T Consensus 192 ~isH~~~~i~~-~dri 206 (275)
T cd03289 192 LSEHRIEAMLE-CQRF 206 (275)
T ss_pred EEECCHHHHHh-CCEE
Confidence 2345555544 6653
No 168
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=3.2e-36 Score=290.28 Aligned_cols=183 Identities=17% Similarity=0.203 Sum_probs=147.2
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|++ +...+
T Consensus 9 l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~-----p~~G~I~i~G~~----------------------i~~~~ 61 (363)
T TIGR01186 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE-----PTAGQIFIDGEN----------------------IMKQS 61 (363)
T ss_pred EEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-----CCceEEEECCEE----------------------CCcCC
Confidence 999999999999999999999999999999999999 999999999987 55555
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccc
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGD 251 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~ 251 (317)
...++.. ..+.+||++|++.+|+ .+||.+|+.+...... ......+++.++++.+++... .+.++
T Consensus 62 ~~~~~~~---rr~~i~~v~Q~~~l~~-~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~--~~~~p-------- 127 (363)
T TIGR01186 62 PVELREV---RRKKIGMVFQQFALFP-HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEY--EHRYP-------- 127 (363)
T ss_pred HHHHHHH---HhCcEEEEECCCcCCC-CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchh--hhCCh--------
Confidence 5544210 0124999999998664 5899999998754322 223345667888999887422 22333
Q ss_pred hhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------cCCCcchhhcccCCC
Q 021147 252 LLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
.+|||||+||++|||||+.+|+++|||||++ ||+.++..+++.+.++.+. ..|++..+...+|||
T Consensus 128 -~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI 200 (363)
T TIGR01186 128 -DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRI 200 (363)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 6999999999999999999999999999999 9999999999999988543 456677677777764
No 169
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=6.9e-36 Score=268.63 Aligned_cols=181 Identities=19% Similarity=0.199 Sum_probs=146.1
Q ss_pred ceEEEeEEEEcCCC-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 71 LTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 71 ~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.|+++|++++|++. ..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 2 ~l~~~~l~~~~~~~~~~~-----l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~---- 67 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPV-----LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE-----LSSGSILIDGVD---- 67 (221)
T ss_pred cEEEEEEEEecCCCCccc-----ccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCCEEEECCEE----
Confidence 48999999999753 234 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
+...+...+++. ++|++|++.++. .|+.+|+.+.... ..+++.++++
T Consensus 68 ------------------~~~~~~~~~~~~-------i~~~~q~~~l~~--~tv~enl~~~~~~------~~~~~~~~~~ 114 (221)
T cd03244 68 ------------------ISKIGLHDLRSR-------ISIIPQDPVLFS--GTIRSNLDPFGEY------SDEELWQALE 114 (221)
T ss_pred ------------------hHhCCHHHHhhh-------EEEECCCCcccc--chHHHHhCcCCCC------CHHHHHHHHH
Confidence 444455555555 999999998664 4999999754221 1234566677
Q ss_pred HcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 230 TFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 230 ~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
.+++. ...++.++.+.+.... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.
T Consensus 115 ~~~l~~~~~~l~~~l~~~~~~~~--~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 186 (221)
T cd03244 115 RVGLKEFVESLPGGLDTVVEEGG--ENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAF 186 (221)
T ss_pred HhCcHHHHHhcccccccccccCC--CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 77763 2223445655544444 7999999999999999999999999999999 99999999999999874
No 170
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-36 Score=274.81 Aligned_cols=203 Identities=19% Similarity=0.218 Sum_probs=153.5
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+++|+++|+++.|++. .+ |+|+||+|++||++||+|+||||||||+++|+|+++|....|++|+|.++|++
T Consensus 10 ~~~l~~~~l~~~~~~~-~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~--- 80 (258)
T PRK14268 10 QPQIKVENLNLWYGEK-QA-----LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGED--- 80 (258)
T ss_pred ceeEEEeeeEEEeCCe-ee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEE---
Confidence 5689999999999754 34 99999999999999999999999999999999999721001379999999975
Q ss_pred eeEecccCCCCcccccceeeccC--ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC-hHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRS--DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS-DVEKQYNQ 225 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~-~~~~~~~~ 225 (317)
+... +...+++. ++|++|++.++. .|+.+|+.+........ ....+++.
T Consensus 81 -------------------i~~~~~~~~~~~~~-------i~~v~q~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~ 132 (258)
T PRK14268 81 -------------------IYEPDVDVVELRKN-------VGMVFQKPNPFP--MSIYDNVAYGPRIHGANKKDLDGVVE 132 (258)
T ss_pred -------------------cccccchHHHHhhh-------EEEEecCCccCc--ccHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2221 12233333 999999987665 69999998753221111 22234566
Q ss_pred HHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 226 IVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 226 ~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
++++.+++.. .... +... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 133 ~~l~~~~l~~~~~~~~-~~~~--------~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~ 203 (258)
T PRK14268 133 NALRSAALWDETSDRL-KSPA--------LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKD 203 (258)
T ss_pred HHHHHcCCCcchhhhh-cCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhC
Confidence 7888887621 0111 2233 6999999999999999999999999999999 9999999999999987532
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 204 ~tiiivsH~~~~~~~~~d~i 223 (258)
T PRK14268 204 YTIVIVTHNMQQAARISDYT 223 (258)
T ss_pred CEEEEEECCHHHHHHhCCEE
Confidence 556677777777764
No 171
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.9e-36 Score=266.60 Aligned_cols=190 Identities=16% Similarity=0.122 Sum_probs=149.1
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++|++++|++. ..|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 i~~~~l~~~~~~~--------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~------ 61 (211)
T cd03298 1 VRLDKIRFSYGEQ--------PMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET-----PQSGRVLINGVD------ 61 (211)
T ss_pred CEEEeEEEEeCCE--------ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEE------
Confidence 5799999999642 238999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-CCChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~a~~ 230 (317)
+...+. .++ .++|++|++.++. .+|+.+|+.+..... .......+++.++++.
T Consensus 62 ----------------~~~~~~--~~~-------~i~~~~q~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~ 115 (211)
T cd03298 62 ----------------VTAAPP--ADR-------PVSMLFQENNLFA-HLTVEQNVGLGLSPGLKLTAEDRQAIEVALAR 115 (211)
T ss_pred ----------------cCcCCH--hHc-------cEEEEecccccCC-CCcHHHHHhcccccccCccHHHHHHHHHHHHH
Confidence 333322 122 3999999987554 579999998653211 1112334567788888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------- 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------- 302 (317)
+++.... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 116 ~~l~~~~---~~~~--------~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~ 184 (211)
T cd03298 116 VGLAGLE---KRLP--------GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLM 184 (211)
T ss_pred cCCHHHH---hCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 8874221 2223 6899999999999999999999999999999 9999999999999988642
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+||+
T Consensus 185 ~sH~~~~~~~~~d~i 199 (211)
T cd03298 185 VTHQPEDAKRLAQRV 199 (211)
T ss_pred EecCHHHHHhhhCEE
Confidence 456666676777764
No 172
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=9.2e-36 Score=273.39 Aligned_cols=194 Identities=16% Similarity=0.184 Sum_probs=150.2
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||++.|++. .+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 i~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~------ 63 (252)
T TIGR03005 1 VRFSDVTKRFGIL-TV-----LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP-----IDEGQIQVEGEQ------ 63 (252)
T ss_pred CEEEEEEEEeCCe-eE-----EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE------
Confidence 5799999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCC-------------hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc--CCC
Q 021147 152 LQEYTIPRGVRHGELVIRRSD-------------SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM--EGD 216 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~-------------~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~--~~~ 216 (317)
+..++ ...+++ .++|++|++.+++ ..|+.+|+.+.... ...
T Consensus 64 ----------------i~~~~~~~~~~~~~~~~~~~~~~~-------~i~~v~q~~~~~~-~~tv~~nl~~~~~~~~~~~ 119 (252)
T TIGR03005 64 ----------------LYHMPGRNGPLVPADEKHLRQMRN-------KIGMVFQSFNLFP-HKTVLDNVTEAPVLVLGMA 119 (252)
T ss_pred ----------------ccccccccccccccchhHHHHHhh-------CeEEEecCcccCC-CCcHHHHHHHHHHHhcCCC
Confidence 22221 112233 3999999986553 57999999874321 111
Q ss_pred ChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHH
Q 021147 217 SDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDM 295 (317)
Q Consensus 217 ~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~ 295 (317)
......++.++++.+++.... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.
T Consensus 120 ~~~~~~~~~~~l~~~gl~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ 188 (252)
T TIGR03005 120 RAEAEKRAMELLDMVGLADKA---DHMP--------AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNV 188 (252)
T ss_pred HHHHHHHHHHHHHHcCChhHh---hcCh--------hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 222345567788888874221 1222 6899999999999999999999999999999 999999999999
Q ss_pred HHHHHHh-------cCCCcchhhcccCCC
Q 021147 296 LRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 296 l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
|+++.+. ..|++..+...+||+
T Consensus 189 l~~~~~~~~~tiiivsH~~~~~~~~~d~i 217 (252)
T TIGR03005 189 IRRLASEHDLTMLLVTHEMGFAREFADRV 217 (252)
T ss_pred HHHHHHhcCcEEEEEeCCHHHHHHhcCEE
Confidence 9988653 346666666666653
No 173
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=4.1e-36 Score=273.02 Aligned_cols=196 Identities=20% Similarity=0.207 Sum_probs=144.8
Q ss_pred eEEEeEEEEcCCC-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 72 TDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 72 I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
|+++||+++|+.. ..+ |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|.+
T Consensus 1 i~~~~l~~~~~~~~~~~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~----- 65 (237)
T cd03252 1 ITFEHVRFRYKPDGPVI-----LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV-----PENGRVLVDGHD----- 65 (237)
T ss_pred CEEEEEEEecCCCCccc-----eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCee-----
Confidence 5789999999643 333 999999999999999999999999999999999999 999999999976
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+...+...+++. ++|+||++.+++ .|+.+|+.+.... .. ...+...++.
T Consensus 66 -----------------~~~~~~~~~~~~-------i~~~~q~~~~~~--~tv~~nl~~~~~~--~~---~~~~~~~~~~ 114 (237)
T cd03252 66 -----------------LALADPAWLRRQ-------VGVVLQENVLFN--RSIRDNIALADPG--MS---MERVIEAAKL 114 (237)
T ss_pred -----------------hHhcCHHHHhhc-------EEEEcCCchhcc--chHHHHhhccCCC--CC---HHHHHHHHHH
Confidence 333444444444 999999987664 5999999864321 11 1123333444
Q ss_pred cCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 231 FNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 231 ~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
.++. ...++.+....+..+. .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 115 ~~~~~~l~~l~~~~~~~~~~~~--~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii 192 (237)
T cd03252 115 AGAHDFISELPEGYDTIVGEQG--AGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVII 192 (237)
T ss_pred cCcHHHHHhCcccccchhhcCC--CcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4432 1112223222222222 6999999999999999999999999999999 9999999999999987431
Q ss_pred cCCCcchhhcccCC
Q 021147 303 ADRNLSCKSCARNK 316 (317)
Q Consensus 303 ~~~~~~~~~~~~~~ 316 (317)
..|++..+. .+|+
T Consensus 193 ~sH~~~~~~-~~d~ 205 (237)
T cd03252 193 IAHRLSTVK-NADR 205 (237)
T ss_pred EeCCHHHHH-hCCE
Confidence 345555553 3555
No 174
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-36 Score=290.57 Aligned_cols=206 Identities=18% Similarity=0.191 Sum_probs=156.9
Q ss_pred CceEEEeEEEEcCCCCcc------------------ccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCC
Q 021147 70 SLTDAKNKILSYTPGAWI------------------ENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK 131 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~------------------~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~ 131 (317)
.+|+++||++.|+..... ..+.+|+++||+|++||+++|+||||||||||+|+|+|+++
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--- 79 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--- 79 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---
Confidence 368888888888654210 00114999999999999999999999999999999999999
Q ss_pred CCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhh
Q 021147 132 FASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK 211 (317)
Q Consensus 132 ~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~ 211 (317)
|++|+|+++|++ +...+...+++. ..+.+||++|++.+|+ .+|+.+|+.+..
T Consensus 80 --p~sG~I~i~G~~----------------------i~~~~~~~l~~~---~~~~igyv~Q~~~l~~-~~Tv~enl~~~~ 131 (400)
T PRK10070 80 --PTRGQVLIDGVD----------------------IAKISDAELREV---RRKKIAMVFQSFALMP-HMTVLDNTAFGM 131 (400)
T ss_pred --CCCCEEEECCEE----------------------CCcCCHHHHHHH---HhCCEEEEECCCcCCC-CCCHHHHHHHHH
Confidence 999999999986 444444333211 1124999999987654 579999998764
Q ss_pred ccCC-CChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHH
Q 021147 212 SMEG-DSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENE 289 (317)
Q Consensus 212 ~~~~-~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~ 289 (317)
.... ......+++.++++.+++... .+.++ .+|||||+||++|||||+.+|+++||||||+ ||+.++
T Consensus 132 ~~~~~~~~~~~~~~~e~L~~~gL~~~--~~~~~---------~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r 200 (400)
T PRK10070 132 ELAGINAEERREKALDALRQVGLENY--AHSYP---------DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIR 200 (400)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCChh--hhcCc---------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence 3221 223334567788899887422 12333 6999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHh-------cCCCcchhhcccCCC
Q 021147 290 LIIVDMLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 290 ~~l~~~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
..+.+.|.++.+. ..|++..+...+|||
T Consensus 201 ~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri 235 (400)
T PRK10070 201 TEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRI 235 (400)
T ss_pred HHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEE
Confidence 9999999988543 456666666667764
No 175
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-36 Score=271.23 Aligned_cols=197 Identities=16% Similarity=0.229 Sum_probs=164.9
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
+++++++|+++|++-.. ++||||++++||+++||||||||||||+++|+|+|+ |++|+|.++|++
T Consensus 3 ~lL~v~~l~k~FGGl~A------l~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~-----P~~G~v~~~G~~---- 67 (250)
T COG0411 3 PLLEVRGLSKRFGGLTA------VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK-----PSSGTVIFRGRD---- 67 (250)
T ss_pred ceeeeccceeecCCEEE------EeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc-----CCCceEEECCcc----
Confidence 57899999999986543 999999999999999999999999999999999999 999999999997
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc-------------CCC
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM-------------EGD 216 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~-------------~~~ 216 (317)
+..+++..+.+. .|+-.||.+.+|. .+||.||+..+... ...
T Consensus 68 ------------------it~l~p~~iar~------Gi~RTFQ~~rlF~-~lTVlENv~va~~~~~~~~~~l~~~~~~~~ 122 (250)
T COG0411 68 ------------------ITGLPPHRIARL------GIARTFQITRLFP-GLTVLENVAVGAHARLGLSGLLGRPRARKE 122 (250)
T ss_pred ------------------cCCCCHHHHHhc------cceeecccccccC-CCcHHHHHHHHhhhhhhhhhhhccccchhh
Confidence 777777654432 2555699998776 69999999876321 113
Q ss_pred ChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHH
Q 021147 217 SDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDM 295 (317)
Q Consensus 217 ~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~ 295 (317)
.+..+++..++++.+++.... +... .+||+||++|+.|||||+.+|++++||||.+ |.+.....+.+.
T Consensus 123 e~~~~e~A~~~Le~vgL~~~a---~~~A--------~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~ 191 (250)
T COG0411 123 EREARERARELLEFVGLGELA---DRPA--------GNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAEL 191 (250)
T ss_pred HHHHHHHHHHHHHHcCCchhh---cchh--------hcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHH
Confidence 455677788889999985333 3333 7899999999999999999999999999999 999999999999
Q ss_pred HHHHHHh-------cCCCcchhhcccCCC
Q 021147 296 LRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 296 l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
|+++.+. -+|+...+-.+||||
T Consensus 192 i~~i~~~~g~tillIEHdM~~Vm~l~dri 220 (250)
T COG0411 192 IRELRDRGGVTILLIEHDMKLVMGLADRI 220 (250)
T ss_pred HHHHHhcCCcEEEEEEeccHHHhhhccEE
Confidence 9999764 467888888888885
No 176
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.2e-36 Score=278.36 Aligned_cols=211 Identities=19% Similarity=0.218 Sum_probs=166.4
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
.++++||+..|..... .+.+++||||+|++||++||||+||||||||.++|+|+++++.....+|+|.++|++
T Consensus 1 lL~v~nL~v~f~~~~g--~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~----- 73 (316)
T COG0444 1 LLEVKNLSVSFPTDAG--VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKD----- 73 (316)
T ss_pred CceEeeeEEEEecCCc--cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcc-----
Confidence 4789999999965432 123499999999999999999999999999999999999743233478999999987
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhc-cC-C-CChHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKS-ME-G-DSDVEKQYNQI 226 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~-~~-~-~~~~~~~~~~~ 226 (317)
+..++.+.+++. .-+.|+++||+|. -+++.++|.+.+.-.-. .. . ...+..+++.+
T Consensus 74 -----------------l~~l~~~~~~~i---RG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~ 133 (316)
T COG0444 74 -----------------LLSLSEKELRKI---RGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIE 133 (316)
T ss_pred -----------------cccCCHHHHHhh---cCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHH
Confidence 444554433221 1234999999975 67788888887753222 11 1 23456778899
Q ss_pred HHHHcCCCcc-cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 227 VATTFNCPYL-SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 227 ~a~~~~l~~~-~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
+++.++++.. ..-+.|+ .+|||||+||+.||.|++.+|+++|.||||+ ||..++..+.++|+++.+.
T Consensus 134 ~L~~Vgi~~~~~~~~~YP---------helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~ 204 (316)
T COG0444 134 LLELVGIPDPERRLKSYP---------HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKG 204 (316)
T ss_pred HHHHcCCCCHHHHHhhCC---------cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcC
Confidence 9999999632 2334788 4999999999999999999999999999999 9999999999999999863
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
-.|++..++.++|||
T Consensus 205 ~aiilITHDl~vva~~aDri 224 (316)
T COG0444 205 TALILITHDLGVVAEIADRV 224 (316)
T ss_pred CEEEEEeCCHHHHHHhcceE
Confidence 467899999999986
No 177
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.2e-35 Score=274.21 Aligned_cols=199 Identities=19% Similarity=0.226 Sum_probs=153.7
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||++.|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++|+. +++|+|+++|.+
T Consensus 3 ~~l~~~nl~~~~~~~-~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~--~~~G~i~~~g~~---- 70 (262)
T PRK09984 3 TIIRVEKLAKTFNQH-QA-----LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDK--SAGSHIELLGRT---- 70 (262)
T ss_pred cEEEEeeEEEEeCCe-EE-----EecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCC--CCceEEEECCEe----
Confidence 479999999999754 34 999999999999999999999999999999999998220 135999999975
Q ss_pred eEecccCCCCcccccceeeccC-----ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC---------C
Q 021147 150 YFLQEYTIPRGVRHGELVIRRS-----DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME---------G 215 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~-----~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~---------~ 215 (317)
+... +...+++. ++|+||++.+++ .+|+.+|+.+..... .
T Consensus 71 ------------------~~~~~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~ 124 (262)
T PRK09984 71 ------------------VQREGRLARDIRKSRAN-------TGYIFQQFNLVN-RLSVLENVLIGALGSTPFWRTCFSW 124 (262)
T ss_pred ------------------cccccccchhHHHHHhh-------eEEEcccccccc-CCcHHHHHHhhhcccccchhhhccc
Confidence 2211 12233333 999999987654 579999998653210 0
Q ss_pred CChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHH
Q 021147 216 DSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVD 294 (317)
Q Consensus 216 ~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~ 294 (317)
.......++.++++.+++.... +... ..||+||+||+++|||++.+|+++||||||+ ||+.+...+.+
T Consensus 125 ~~~~~~~~~~~~l~~~~l~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 193 (262)
T PRK09984 125 FTREQKQRALQALTRVGMVHFA---HQRV--------STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMD 193 (262)
T ss_pred ccHHHHHHHHHHHHHcCCHHHH---hCCc--------cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHH
Confidence 1122345677888888874221 2333 6899999999999999999999999999999 99999999999
Q ss_pred HHHHHHHh-------cCCCcchhhcccCCC
Q 021147 295 MLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 295 ~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
.|+++.+. ..|++..+...+||+
T Consensus 194 ~l~~~~~~~g~tvii~tH~~~~~~~~~d~i 223 (262)
T PRK09984 194 TLRDINQNDGITVVVTLHQVDYALRYCERI 223 (262)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 99998653 456777777777764
No 178
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=6.8e-36 Score=281.74 Aligned_cols=178 Identities=17% Similarity=0.257 Sum_probs=144.1
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
|+|+||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|.+ +.. .
T Consensus 9 l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~----------------------~~~-~ 60 (302)
T TIGR01188 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR-----PTSGTARVAGYD----------------------VVR-E 60 (302)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE----------------------ccc-C
Confidence 999999999999999999999999999999999999 999999999976 322 2
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccc
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGD 251 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~ 251 (317)
...+++. +||+||++.++ ..+|+.+|+.+...... ......+++.++++.+++.... +..+
T Consensus 61 ~~~~~~~-------i~~~~q~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~------- 122 (302)
T TIGR01188 61 PRKVRRS-------IGIVPQYASVD-EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA---DRPV------- 122 (302)
T ss_pred HHHHHhh-------cEEecCCCCCC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh---CCch-------
Confidence 2334444 99999998755 46899999987543222 2223345677889998874222 3333
Q ss_pred hhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 252 LLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
.+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+. ..|++..+...||||
T Consensus 123 -~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v 194 (302)
T TIGR01188 123 -GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRI 194 (302)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE
Confidence 7899999999999999999999999999999 9999999999999998642 567777788888875
No 179
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.6e-36 Score=271.16 Aligned_cols=182 Identities=18% Similarity=0.251 Sum_probs=140.4
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
.|+++|++++|++...+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 2 ~l~~~~l~~~~~~~~~~-----l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~----- 66 (229)
T cd03254 2 EIEFENVNFSYDEKKPV-----LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD-----PQKGQILIDGID----- 66 (229)
T ss_pred eEEEEEEEEecCCCCcc-----ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCEe-----
Confidence 48999999999743334 999999999999999999999999999999999999 999999999975
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+...+...+++. ++|++|++.++. .|+.+|+.+..... . ..++.++++.
T Consensus 67 -----------------~~~~~~~~~~~~-------i~~~~q~~~~~~--~tv~~~~~~~~~~~--~---~~~~~~~~~~ 115 (229)
T cd03254 67 -----------------IRDISRKSLRSM-------IGVVLQDTFLFS--GTIMENIRLGRPNA--T---DEEVIEAAKE 115 (229)
T ss_pred -----------------HHHcCHHHHhhh-------EEEecCCchhhh--hHHHHHHhccCCCC--C---HHHHHHHHHH
Confidence 433444445554 999999987665 39999998653211 1 1234444555
Q ss_pred cCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 231 FNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 231 ~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+++. ...++.+....+.... .+||+||+||++||||++.+|+++||||||+ ||+.+++.+.+.++++.
T Consensus 116 ~~l~~~~~~~~~~~~~~~~~~~--~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 186 (229)
T cd03254 116 AGAHDFIMKLPNGYDTVLGENG--GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM 186 (229)
T ss_pred hChHHHHHhCcccccCHhhcCC--CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 4442 1112223332222222 6899999999999999999999999999999 99999999999999874
No 180
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=8.3e-36 Score=284.52 Aligned_cols=209 Identities=17% Similarity=0.150 Sum_probs=159.6
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCc---CcEEEECcc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSS 144 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~---~G~I~i~g~ 144 (317)
.+++|+++||++.|+.... .+.+|+||||+|++||++||+|+||||||||+++|+|+++ |. +|+|.++|+
T Consensus 9 ~~~~L~i~~l~~~~~~~~~--~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~-----p~~~~sG~I~~~G~ 81 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDG--DVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA-----ANGRIGGSATFNGR 81 (330)
T ss_pred CCceEEEeCeEEEEecCCC--CEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-----CCCCCCeEEEECCE
Confidence 3468999999999953210 0112999999999999999999999999999999999998 64 999999998
Q ss_pred cCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhc-cC-CCChHHH
Q 021147 145 VGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKS-ME-GDSDVEK 221 (317)
Q Consensus 145 ~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~-~~-~~~~~~~ 221 (317)
+ +..++...+++. ..+.|+|+||++. .++..+|+.+|+..... .. .......
T Consensus 82 ~----------------------i~~~~~~~~~~~---r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~ 136 (330)
T PRK09473 82 E----------------------ILNLPEKELNKL---RAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAF 136 (330)
T ss_pred E----------------------CCcCCHHHHHHH---hcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHH
Confidence 7 445554444321 1124999999984 45667888888864321 11 1222334
Q ss_pred HHHHHHHHHcCCCcc-cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 222 QYNQIVATTFNCPYL-SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 222 ~~~~~~a~~~~l~~~-~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
+++.++++.++++.. ...+.++ .+|||||+||++|||||+.+|+++|+||||+ ||+.++..+.++|+++
T Consensus 137 ~~~~~~L~~vgL~~~~~~~~~~p---------~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l 207 (330)
T PRK09473 137 EESVRMLDAVKMPEARKRMKMYP---------HEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNEL 207 (330)
T ss_pred HHHHHHHHHcCCCChHHHhcCCc---------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 567778888887421 1112344 6999999999999999999999999999999 9999999999999998
Q ss_pred HHh-------cCCCcchhhcccCCC
Q 021147 300 LEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 300 ~~~-------~~~~~~~~~~~~~~~ 317 (317)
.+. ..|++..+..++|||
T Consensus 208 ~~~~g~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 208 KREFNTAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred HHHcCCEEEEEECCHHHHHHhCCEE
Confidence 764 567788888788875
No 181
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.2e-35 Score=264.57 Aligned_cols=176 Identities=16% Similarity=0.184 Sum_probs=142.5
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++|++++|++. .+ |+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 ~l~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~v~~~g~~----- 64 (204)
T PRK13538 1 MLEARNLACERDER-IL-----FSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR-----PDAGEVLWQGEP----- 64 (204)
T ss_pred CeEEEEEEEEECCE-EE-----EecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEE-----
Confidence 58999999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+.... ..+++. ++|++|++.++ ..+|+.+|+.+....... ...+++.++++.
T Consensus 65 -----------------~~~~~-~~~~~~-------~~~~~~~~~~~-~~~tv~e~l~~~~~~~~~--~~~~~~~~~l~~ 116 (204)
T PRK13538 65 -----------------IRRQR-DEYHQD-------LLYLGHQPGIK-TELTALENLRFYQRLHGP--GDDEALWEALAQ 116 (204)
T ss_pred -----------------cccch-HHhhhh-------eEEeCCccccC-cCCcHHHHHHHHHHhcCc--cHHHHHHHHHHH
Confidence 22221 223333 99999987644 457999999876432211 234557788999
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
+++.... ...+ ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 117 ~gl~~~~---~~~~--------~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 177 (204)
T PRK13538 117 VGLAGFE---DVPV--------RQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE 177 (204)
T ss_pred cCCHHHh---hCCh--------hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 8874221 2333 6899999999999999999999999999999 999999999999998753
No 182
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.5e-35 Score=267.21 Aligned_cols=205 Identities=12% Similarity=0.170 Sum_probs=151.7
Q ss_pred ceEEEeEEEEcCCC------CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 71 LTDAKNKILSYTPG------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 71 ~I~~~nls~~y~~~------~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
||+++||+++|+.. ..+ |+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~i-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~~~ 70 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPV-----LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL-----PDSGRILVRHE 70 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEE-----EecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEEecC
Confidence 58999999999631 233 999999999999999999999999999999999999 99999999842
Q ss_pred cCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-cCCCChHHHHH
Q 021147 145 VGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-MEGDSDVEKQY 223 (317)
Q Consensus 145 ~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~~~~~~~~~~~ 223 (317)
... ..+..++...... .....++|++|++.++ ..+|+.+|+.+... .........++
T Consensus 71 g~~------------------~~~~~~~~~~~~~---~~~~~i~~~~q~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~ 128 (224)
T TIGR02324 71 GAW------------------VDLAQASPREVLE---VRRKTIGYVSQFLRVI-PRVSALEVVAEPLLERGVPREAARAR 128 (224)
T ss_pred CCc------------------cchhhcCHHHHHH---HHhcceEEEecccccC-CCccHHHHHHHHHHHcCCCHHHHHHH
Confidence 100 0022233222111 0112399999998754 46799999976322 11111233455
Q ss_pred HHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 224 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 224 ~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
+.++++.+++.... . .... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 129 ~~~~l~~~~l~~~~-~-~~~~--------~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 198 (224)
T TIGR02324 129 ARELLARLNIPERL-W-HLPP--------ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKAR 198 (224)
T ss_pred HHHHHHHcCCchhh-h-hCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc
Confidence 67788888874211 1 2233 6899999999999999999999999999999 9999999999999997543
Q ss_pred ------cCCCcchhhcccCCC
Q 021147 303 ------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ------~~~~~~~~~~~~~~~ 317 (317)
..|+...+.+++||+
T Consensus 199 g~tii~vsH~~~~~~~~~d~i 219 (224)
T TIGR02324 199 GAALIGIFHDEEVRELVADRV 219 (224)
T ss_pred CCEEEEEeCCHHHHHHhccee
Confidence 456677777777875
No 183
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-35 Score=276.70 Aligned_cols=196 Identities=17% Similarity=0.233 Sum_probs=151.9
Q ss_pred ceEEEeEEEEcCCCC--ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 71 LTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 71 ~I~~~nls~~y~~~~--~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+|+++||+++|++.. .+ |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~-----l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~--- 70 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQ-----LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE-----EFEGKVKIDGEL--- 70 (277)
T ss_pred eEEEEEEEEEcCCCCcCee-----eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCEEEECCEE---
Confidence 799999999997432 23 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~ 227 (317)
+...+...+++. +||++|++..+....|+.+|+.++..... ......+++.++
T Consensus 71 -------------------i~~~~~~~~~~~-------i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~ 124 (277)
T PRK13642 71 -------------------LTAENVWNLRRK-------IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124 (277)
T ss_pred -------------------CCcCCHHHHhcc-------eEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHH
Confidence 333333344444 99999997533334699999986532211 122233556778
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++.... +..+ .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 125 l~~~~l~~~~---~~~~--------~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~t 193 (277)
T PRK13642 125 LLAVNMLDFK---TREP--------ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLT 193 (277)
T ss_pred HHHCCCHhHh---hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 8888874221 2333 6899999999999999999999999999999 9999999999999988653
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|++..+. .+|+|
T Consensus 194 iil~sH~~~~~~-~~d~i 210 (277)
T PRK13642 194 VLSITHDLDEAA-SSDRI 210 (277)
T ss_pred EEEEeCCHHHHH-hCCEE
Confidence 345555554 35553
No 184
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=8.5e-36 Score=295.12 Aligned_cols=258 Identities=19% Similarity=0.227 Sum_probs=192.3
Q ss_pred ccccCcccccccccccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc------------CCCCceEEEeEEEEcCC
Q 021147 16 EEIISPVDDFDIPLLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT------------RIGSLTDAKNKILSYTP 83 (317)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~I~~~nls~~y~~ 83 (317)
-+++..+-|.-+.|-.|..-.....-+-+.+.+.-+.+ .+++..|.... ...++++++||++.|..
T Consensus 215 l~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~hpYT~--~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~ 292 (539)
T COG1123 215 LGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYTR--GLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGS 292 (539)
T ss_pred HHHHHHhcCeEEEEECCEEEEecCHHHHHhccCCcccH--HHHhhCCCcccccccccccccccccCceeEeeeeeeeecc
Confidence 34556667777778787777666665555544433332 23332222111 14578999999999974
Q ss_pred CC-----ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCC
Q 021147 84 GA-----WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIP 158 (317)
Q Consensus 84 ~~-----~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~ 158 (317)
.. ....+.|++||||+|.+||++||||+||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 293 ~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~-----P~~G~i~~~g~~~~----------- 356 (539)
T COG1123 293 RKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP-----PSSGSIIFDGQDLD----------- 356 (539)
T ss_pred ccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEEeCcccc-----------
Confidence 21 1123567999999999999999999999999999999999999 99999999997511
Q ss_pred CcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhccCCC--ChHHHHHHHHHHHHcCCCc
Q 021147 159 RGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSMEGD--SDVEKQYNQIVATTFNCPY 235 (317)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~~~~--~~~~~~~~~~~a~~~~l~~ 235 (317)
+...+...++++ +-++||+|. -+++.+||.+++.-....... .....+++.++++.++++.
T Consensus 357 ---------~~~~~~~~~r~~-------~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~ 420 (539)
T COG1123 357 ---------LTGGELRRLRRR-------IQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPP 420 (539)
T ss_pred ---------cccchhhhhhhh-------eEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCH
Confidence 222223334444 889999987 577889999998754321111 2333456778899999863
Q ss_pred ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------cCCCc
Q 021147 236 LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-------ADRNL 307 (317)
Q Consensus 236 ~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-------~~~~~ 307 (317)
. ..+.|+ .+||||||||++|||||+.+|+++|+|||+| ||+.++..+.++|.++.+. -+|++
T Consensus 421 ~-~l~ryP---------~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl 490 (539)
T COG1123 421 E-FLDRYP---------HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDL 490 (539)
T ss_pred H-HHhcCc---------hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH
Confidence 2 223577 5999999999999999999999999999999 9999999999999998765 57899
Q ss_pred chhhcccCCC
Q 021147 308 SCKSCARNKV 317 (317)
Q Consensus 308 ~~~~~~~~~~ 317 (317)
..+..+||||
T Consensus 491 ~vV~~i~drv 500 (539)
T COG1123 491 AVVRYIADRV 500 (539)
T ss_pred HHHHhhCceE
Confidence 9999999986
No 185
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.1e-35 Score=262.21 Aligned_cols=174 Identities=15% Similarity=0.166 Sum_probs=141.6
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|++
T Consensus 1 ml~~~~l~~~~~~~~-i-----l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~v~~~g~~----- 64 (200)
T PRK13540 1 MLDVIELDFDYHDQP-L-----LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN-----PEKGEILFERQS----- 64 (200)
T ss_pred CEEEEEEEEEeCCee-E-----EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeeEEECCCc-----
Confidence 589999999997543 4 999999999999999999999999999999999999 999999999976
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+.. ....++++ ++|++|++.++ ...|+.+|+.+...... ...++.++++.
T Consensus 65 -----------------~~~-~~~~~~~~-------i~~~~q~~~~~-~~~tv~~~~~~~~~~~~----~~~~~~~~l~~ 114 (200)
T PRK13540 65 -----------------IKK-DLCTYQKQ-------LCFVGHRSGIN-PYLTLRENCLYDIHFSP----GAVGITELCRL 114 (200)
T ss_pred -----------------ccc-CHHHHHhh-------eEEeccccccC-cCCCHHHHHHHHHhcCc----chHHHHHHHHH
Confidence 321 22233333 99999987644 35799999987532111 12356778888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
++++... ++++ ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 115 ~~l~~~~---~~~~--------~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~ 175 (200)
T PRK13540 115 FSLEHLI---DYPC--------GLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRA 175 (200)
T ss_pred cCCchhh---hCCh--------hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH
Confidence 8864221 3444 6899999999999999999999999999999 999999999999998754
No 186
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=274.11 Aligned_cols=204 Identities=17% Similarity=0.165 Sum_probs=154.6
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
+.++|+++|+++.|++. .+ |+|+||+|++||+++|+||||||||||+++|+|+++|....|++|+|.++|++
T Consensus 10 ~~~~l~~~~l~~~~~~~-~i-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~-- 81 (260)
T PRK10744 10 APSKIQVRNLNFYYGKF-HA-----LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGEN-- 81 (260)
T ss_pred CCceEEEEEEEEEeCCe-EE-----eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEE--
Confidence 45689999999999754 34 99999999999999999999999999999999998621111579999999976
Q ss_pred eeeEecccCCCCcccccceeec--cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC--CCChHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME--GDSDVEKQY 223 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~--~~~~~~~~~ 223 (317)
+. ..+...+++. ++|++|++.++. .|+.+|+.+..... .......++
T Consensus 82 --------------------~~~~~~~~~~~~~~-------i~~~~q~~~~~~--~tv~~nl~~~~~~~~~~~~~~~~~~ 132 (260)
T PRK10744 82 --------------------ILTPKQDIALLRAK-------VGMVFQKPTPFP--MSIYDNIAFGVRLFEKLSRAEMDER 132 (260)
T ss_pred --------------------ccccccchHHHhcc-------eEEEecCCccCc--CcHHHHHhhhHhhcCCCCHHHHHHH
Confidence 22 1233344444 999999987664 69999998753221 111223456
Q ss_pred HHHHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 224 NQIVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 224 ~~~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+.++++.+++.. .... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.
T Consensus 133 ~~~~l~~~~l~~~~~~~~-~~~~--------~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~ 203 (260)
T PRK10744 133 VEWALTKAALWNEVKDKL-HQSG--------YSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK 203 (260)
T ss_pred HHHHHHHcCCChhhHHHH-hcCC--------CCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 778888888631 1111 1222 6899999999999999999999999999999 99999999999999885
Q ss_pred Hh-----cCCCcchhhcccCCC
Q 021147 301 EH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 301 ~~-----~~~~~~~~~~~~~~~ 317 (317)
+. ..|++..+...+||+
T Consensus 204 ~~~tiii~sH~~~~~~~~~d~i 225 (260)
T PRK10744 204 QDYTVVIVTHNMQQAARCSDYT 225 (260)
T ss_pred cCCeEEEEeCCHHHHHHhCCEE
Confidence 32 446666666666664
No 187
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-35 Score=269.66 Aligned_cols=197 Identities=22% Similarity=0.324 Sum_probs=146.5
Q ss_pred eEEEeEEEEcCCCC-ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 72 TDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 72 I~~~nls~~y~~~~-~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
|+++|+++.|++.. .+ |+++||++++|++++|+||||||||||+++|+|+++ |++|+|+++|.+
T Consensus 1 i~~~~l~~~~~~~~~~~-----l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~----- 65 (234)
T cd03251 1 VEFKNVTFRYPGDGPPV-----LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD-----VDSGRILIDGHD----- 65 (234)
T ss_pred CEEEEEEEEeCCCCccc-----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc-----CCCCEEEECCEE-----
Confidence 57899999997542 33 999999999999999999999999999999999999 999999999975
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+...+...+++. ++|++|++.++. .|+++|+.+..... . .....+.++.
T Consensus 66 -----------------~~~~~~~~~~~~-------i~~~~q~~~~~~--~tv~enl~~~~~~~--~---~~~~~~~~~~ 114 (234)
T cd03251 66 -----------------VRDYTLASLRRQ-------IGLVSQDVFLFN--DTVAENIAYGRPGA--T---REEVEEAARA 114 (234)
T ss_pred -----------------hhhCCHHHHHhh-------EEEeCCCCeecc--ccHHHHhhccCCCC--C---HHHHHHHHHH
Confidence 333444444554 999999987764 59999998753211 1 1122333333
Q ss_pred cCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 231 FNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 231 ~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
.++. ...++.+....+..+. ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 115 ~~~~~~~~~l~~~l~~~~~~~~--~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~ 192 (234)
T cd03251 115 ANAHEFIMELPEGYDTVIGERG--VKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFV 192 (234)
T ss_pred cCcHHHHHhcccCcceeeccCC--CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3331 1112223333333332 7899999999999999999999999999999 9999999999999987432
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|++..+.. +|+|
T Consensus 193 ~sh~~~~~~~-~d~v 206 (234)
T cd03251 193 IAHRLSTIEN-ADRI 206 (234)
T ss_pred EecCHHHHhh-CCEE
Confidence 3345555543 6653
No 188
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=9.5e-36 Score=271.19 Aligned_cols=196 Identities=14% Similarity=0.076 Sum_probs=147.9
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcc--cCCCCCCcCcEEEECcccCcee
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~--~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
|+++||+++|++. .+ |+|+||+|++||+++|+||||||||||+|+|+|++ + |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~-~~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-----~~~G~i~~~g~~---- 65 (243)
T TIGR01978 1 LKIKDLHVSVEDK-EI-----LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE-----VTSGTILFKGQD---- 65 (243)
T ss_pred CeEeeEEEEECCE-EE-----EeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCcceEEECCEe----
Confidence 5789999999754 34 99999999999999999999999999999999995 6 899999999986
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc-CC-------CChHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM-EG-------DSDVEK 221 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~-~~-------~~~~~~ 221 (317)
+...+.....+ ..++|++|++.++. .+|+.+|+.+.... .. ......
T Consensus 66 ------------------~~~~~~~~~~~------~~i~~v~q~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (243)
T TIGR01978 66 ------------------LLELEPDERAR------AGLFLAFQYPEEIP-GVSNLEFLRSALNARRSARGEEPLDLLDFL 120 (243)
T ss_pred ------------------cCCCCHHHhhc------cceEeeeccccccC-CcCHHHHHHHHHHHhhcccccccccHHHHH
Confidence 33333322211 12899999987654 57899998764211 10 111223
Q ss_pred HHHHHHHHHcCCCcccCCCCCCEEEEeccchh-cCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 222 QYNQIVATTFNCPYLSFRDDKPVVVVTHGDLL-SLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 222 ~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~-~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
+++.++++.++++.... +... . .||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++
T Consensus 121 ~~~~~~l~~~~l~~~~~--~~~~--------~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 190 (243)
T TIGR01978 121 KLLKAKLALLGMDEEFL--NRSV--------NEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRL 190 (243)
T ss_pred HHHHHHHHHcCCchhhc--cccc--------ccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 45677788888741111 2222 3 599999999999999999999999999999 9999999999999998
Q ss_pred HHh------cCCCcchhhcc-cCCC
Q 021147 300 LEH------ADRNLSCKSCA-RNKV 317 (317)
Q Consensus 300 ~~~------~~~~~~~~~~~-~~~~ 317 (317)
.+. ..|++..+... +|++
T Consensus 191 ~~~~~tvi~vsH~~~~~~~~~~d~i 215 (243)
T TIGR01978 191 REPDRSFLIITHYQRLLNYIKPDYV 215 (243)
T ss_pred HHCCcEEEEEEecHHHHHhhcCCeE
Confidence 542 45666666665 5653
No 189
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.3e-35 Score=264.80 Aligned_cols=192 Identities=18% Similarity=0.205 Sum_probs=151.3
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++|++++|++.. + ++++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|++
T Consensus 9 ~~~l~~~~l~~~~~~~~-i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~--- 74 (214)
T PRK13543 9 PPLLAAHALAFSRNEEP-V-----FGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH-----VESGQIQIDGKT--- 74 (214)
T ss_pred cceEEEeeEEEecCCce-e-----eecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCCeeEEECCEE---
Confidence 35899999999997543 4 999999999999999999999999999999999999 999999999976
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
+... ..++. ++|++|++.++. .+|+.+|+.+....... ...+.+.+++
T Consensus 75 -------------------i~~~---~~~~~-------i~~~~q~~~~~~-~~t~~e~l~~~~~~~~~--~~~~~~~~~l 122 (214)
T PRK13543 75 -------------------ATRG---DRSRF-------MAYLGHLPGLKA-DLSTLENLHFLCGLHGR--RAKQMPGSAL 122 (214)
T ss_pred -------------------ccch---hhhhc-------eEEeecCccccc-CCcHHHHHHHHHHhcCC--cHHHHHHHHH
Confidence 2211 12223 999999886544 46999999765432111 1223456777
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++.... +..+ ..||+||+||+++||+++.+|+++||||||+ ||+.+++.+.+.++++.+.
T Consensus 123 ~~~~l~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii 191 (214)
T PRK13543 123 AIVGLAGYE---DTLV--------RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAAL 191 (214)
T ss_pred HHcCChhhc---cCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 888764221 2333 6999999999999999999999999999999 9999999999999987543
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|++
T Consensus 192 i~sH~~~~~~~~~~~i 207 (214)
T PRK13543 192 VTTHGAYAAPPVRTRM 207 (214)
T ss_pred EEecChhhhhhhcceE
Confidence 456666666666663
No 190
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=271.41 Aligned_cols=203 Identities=19% Similarity=0.195 Sum_probs=152.4
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|++|+++||++.|++. .+ |+|+||+|++||+++|+||||||||||+++|+|++++....|++|+|+++|++
T Consensus 1 ~~~l~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~--- 71 (250)
T PRK14240 1 MGKISVKDLDLFYGDF-QA-----LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQD--- 71 (250)
T ss_pred CCeEEEEEEEEEECCc-ee-----eecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE---
Confidence 4579999999999754 34 99999999999999999999999999999999998622111279999999986
Q ss_pred eeEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC--ChHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD--SDVEKQYN 224 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~--~~~~~~~~ 224 (317)
+.. .+...+++. ++|++|++.+++ .|+.+|+.+....... .....+++
T Consensus 72 -------------------~~~~~~~~~~~~~~-------i~~~~q~~~~~~--~t~~~ni~~~~~~~~~~~~~~~~~~~ 123 (250)
T PRK14240 72 -------------------IYKSDIDVNQLRKR-------VGMVFQQPNPFP--MSIYDNVAYGPRTHGIKDKKKLDEIV 123 (250)
T ss_pred -------------------ccccccchHHHhcc-------EEEEecCCccCc--ccHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 221 233334444 999999987664 6999999875422111 12234556
Q ss_pred HHHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 225 QIVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 225 ~~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.++++.+++.. .... +..+ .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 124 ~~~l~~~~l~~~l~~~~-~~~~--------~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 194 (250)
T PRK14240 124 EKSLKGAALWDEVKDRL-KKSA--------LGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK 194 (250)
T ss_pred HHHHHHcCCchhhHHHH-hcCC--------CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc
Confidence 67777777521 0111 2222 6899999999999999999999999999999 999999999999998743
Q ss_pred h-----cCCCcchhhcccCCC
Q 021147 302 H-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~-----~~~~~~~~~~~~~~~ 317 (317)
. ..|++..+...+|||
T Consensus 195 ~~tiii~sH~~~~~~~~~d~v 215 (250)
T PRK14240 195 DYTIVIVTHNMQQASRISDKT 215 (250)
T ss_pred CCeEEEEEeCHHHHHhhCCEE
Confidence 2 345666666666664
No 191
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-35 Score=272.58 Aligned_cols=203 Identities=18% Similarity=0.211 Sum_probs=152.3
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+++|+++||++.|++. .+ |+++||+|++||+++|+|+||||||||+++|+|+++|....|++|+|+++|++
T Consensus 10 ~~~l~i~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~--- 80 (259)
T PRK14274 10 QEVYQINGMNLWYGQH-HA-----LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSN--- 80 (259)
T ss_pred CceEEEeeEEEEECCe-ee-----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEE---
Confidence 4689999999999754 34 99999999999999999999999999999999998721001268999999986
Q ss_pred eeEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC--CChHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG--DSDVEKQYN 224 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~--~~~~~~~~~ 224 (317)
+.. .+...+++. +||+||++.++.. |+++|+.+...... ......+++
T Consensus 81 -------------------~~~~~~~~~~~~~~-------i~~v~q~~~~~~~--tv~enl~~~~~~~~~~~~~~~~~~~ 132 (259)
T PRK14274 81 -------------------ILKGKVDLVELRKN-------IGMVFQKGNPFPQ--SIFDNVAYGPRIHGTKNKKKLQEIV 132 (259)
T ss_pred -------------------ccccccCHHHHhhc-------eEEEecCCccccc--CHHHHHHhHHHhcCCCCHHHHHHHH
Confidence 221 222334444 9999999887753 99999987532211 112223445
Q ss_pred HHHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 225 QIVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 225 ~~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.++++.+++.. .... +... .+||+||+||+++||+++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 133 ~~~l~~~~l~~~~~~~l-~~~~--------~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 203 (259)
T PRK14274 133 EKSLKDVALWDEVKDRL-HTQA--------LSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE 203 (259)
T ss_pred HHHHHHcCCchhhhhhh-hCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc
Confidence 66777777631 1111 1222 6899999999999999999999999999999 999999999999999753
Q ss_pred h-----cCCCcchhhcccCCC
Q 021147 302 H-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~-----~~~~~~~~~~~~~~~ 317 (317)
. ..|++..+...+||+
T Consensus 204 ~~tiiivtH~~~~~~~~~d~i 224 (259)
T PRK14274 204 KYTIVIVTHNMQQAARVSDQT 224 (259)
T ss_pred CCEEEEEEcCHHHHHHhCCEE
Confidence 2 345666666666764
No 192
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=272.85 Aligned_cols=202 Identities=17% Similarity=0.203 Sum_probs=152.2
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||+++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++|....|++|+|.++|++
T Consensus 4 ~l~i~~v~~~~~~~-~~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~----- 72 (258)
T PRK14241 4 RIDVKDLNIYYGSF-HA-----VEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGED----- 72 (258)
T ss_pred cEEEeeEEEEECCE-ee-----eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEe-----
Confidence 69999999999754 34 99999999999999999999999999999999999732111379999999976
Q ss_pred EecccCCCCcccccceeec--cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC--CChHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG--DSDVEKQYNQI 226 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~--~~~~~~~~~~~ 226 (317)
+. ..+...+++. ++|++|++.+++ .+|+.+|+.+...... ......+++.+
T Consensus 73 -----------------~~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~ 127 (258)
T PRK14241 73 -----------------LYGPGVDPVAVRRT-------IGMVFQRPNPFP-TMSIRDNVVAGLKLNGVRNKKDLDELVEK 127 (258)
T ss_pred -----------------ccccccChHHHhcc-------eEEEccccccCC-CCcHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 21 1222333444 999999987654 5799999986542211 11223345667
Q ss_pred HHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 227 VATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 227 ~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
+++.+++.. .... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 128 ~l~~~~l~~~~~~~~-~~~~--------~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 198 (258)
T PRK14241 128 SLRGANLWNEVKDRL-DKPG--------GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDY 198 (258)
T ss_pred HHHHcCCchhhhhHh-hCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCC
Confidence 788887621 1111 2233 6899999999999999999999999999999 9999999999999987432
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 199 tviivsH~~~~~~~~~d~i 217 (258)
T PRK14241 199 TIVIVTHNMQQAARVSDQT 217 (258)
T ss_pred EEEEEecCHHHHHHhCCEE
Confidence 456666666666664
No 193
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-35 Score=269.87 Aligned_cols=196 Identities=20% Similarity=0.279 Sum_probs=147.4
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++|++++|++...+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 l~~~~l~~~~~~~~~~-----l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~v~~~g~~------ 64 (236)
T cd03253 1 IEFENVTFAYDPGRPV-----LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD-----VSSGSILIDGQD------ 64 (236)
T ss_pred CEEEEEEEEeCCCCce-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCEEEECCEE------
Confidence 5789999999643334 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHc
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF 231 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~ 231 (317)
+...+...+++. ++|++|++.+++ .|+.+|+.+..... . ...+...++.+
T Consensus 65 ----------------~~~~~~~~~~~~-------i~~~~q~~~~~~--~tv~~nl~~~~~~~--~---~~~~~~~~~~~ 114 (236)
T cd03253 65 ----------------IREVTLDSLRRA-------IGVVPQDTVLFN--DTIGYNIRYGRPDA--T---DEEVIEAAKAA 114 (236)
T ss_pred ----------------hhhCCHHHHHhh-------EEEECCCChhhc--chHHHHHhhcCCCC--C---HHHHHHHHHHc
Confidence 444454455554 999999998775 59999998753211 1 11233444444
Q ss_pred CCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----c
Q 021147 232 NCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----A 303 (317)
Q Consensus 232 ~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~ 303 (317)
++. ...++.++.+.+..+. ..||+||+||+++|||++.+|+++||||||+ ||+.+...+.+.|.++.+. .
T Consensus 115 ~l~~~~~~l~~~~~~~~~~~~--~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~ 192 (236)
T cd03253 115 QIHDKIMRFPDGYDTIVGERG--LKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVI 192 (236)
T ss_pred CcHHHHHhccccccchhhcCC--CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 442 1123334443332332 6899999999999999999999999999999 9999999999999887531 2
Q ss_pred CCCcchhhcccCC
Q 021147 304 DRNLSCKSCARNK 316 (317)
Q Consensus 304 ~~~~~~~~~~~~~ 316 (317)
.|+...+.. +|+
T Consensus 193 sh~~~~~~~-~d~ 204 (236)
T cd03253 193 AHRLSTIVN-ADK 204 (236)
T ss_pred cCCHHHHHh-CCE
Confidence 344455443 554
No 194
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-35 Score=274.29 Aligned_cols=195 Identities=14% Similarity=0.172 Sum_probs=152.2
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCc--------CcEEEEC
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE--------RAQVTYN 142 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~--------~G~I~i~ 142 (317)
||+++|++++|++. .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |+ +|+|.++
T Consensus 1 ml~~~nl~~~~~~~-~i-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~-----p~~~~~~~~~~G~i~~~ 69 (272)
T PRK13547 1 MLTADHLHVARRHR-AI-----LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT-----GGGAPRGARVTGDVTLN 69 (272)
T ss_pred CeEEEEEEEEECCE-eE-----EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CcccccccCCceEEEEC
Confidence 58999999999754 34 999999999999999999999999999999999999 77 8999999
Q ss_pred cccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-cC---C-CC
Q 021147 143 SSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-ME---G-DS 217 (317)
Q Consensus 143 g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~~---~-~~ 217 (317)
|.+ +...+...+++. ++|+||++..+. .+|+.+|+.+... .. . ..
T Consensus 70 g~~----------------------~~~~~~~~~~~~-------~~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~ 119 (272)
T PRK13547 70 GEP----------------------LAAIDAPRLARL-------RAVLPQAAQPAF-AFSAREIVLLGRYPHARRAGALT 119 (272)
T ss_pred CEE----------------------cccCCHHHHHhh-------cEEecccCCCCC-CCcHHHHHhhcccccccccccCC
Confidence 986 434444444444 899999875433 4799999986431 11 1 11
Q ss_pred hHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceec---------cccceeeccCCCC-CCHH
Q 021147 218 DVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLG---------IPPAKQIFDIPES-SDPE 287 (317)
Q Consensus 218 ~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~---------~~p~ilIlDEPts-LD~~ 287 (317)
....+.+.++++.+++.... +... .+||+||+||+++|||++ .+|+++||||||+ ||+.
T Consensus 120 ~~~~~~~~~~l~~~~l~~~~---~~~~--------~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~ 188 (272)
T PRK13547 120 HRDGEIAWQALALAGATALV---GRDV--------TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLA 188 (272)
T ss_pred HHHHHHHHHHHHHcCcHhhh---cCCc--------ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHH
Confidence 22334566788888874221 2333 699999999999999999 5999999999999 9999
Q ss_pred HHHHHHHHHHHHHHh-------cCCCcchhhcccCCC
Q 021147 288 NELIIVDMLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 288 t~~~l~~~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
++..+.+.|+++.+. ..|++..+...+|++
T Consensus 189 ~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i 225 (272)
T PRK13547 189 HQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRI 225 (272)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE
Confidence 999999999988653 346666666666663
No 195
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=2.4e-35 Score=264.19 Aligned_cols=190 Identities=16% Similarity=0.135 Sum_probs=148.8
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
++++||++.|+. . ++++||+|++|++++|+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 1 ~~~~~l~~~~~~---~-----~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~------ 61 (213)
T TIGR01277 1 LALDKVRYEYEH---L-----PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE-----PASGSIKVNDQS------ 61 (213)
T ss_pred CeEEeeeEEeCC---c-----ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEE------
Confidence 478999999962 2 789999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-cCCCChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-MEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~~~~~~~~~~~~~~~a~~ 230 (317)
+.... .+++. ++|++|++.++. .+|+.+|+.+... .........+++.++++.
T Consensus 62 ----------------~~~~~--~~~~~-------i~~v~q~~~~~~-~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~ 115 (213)
T TIGR01277 62 ----------------HTGLA--PYQRP-------VSMLFQENNLFA-HLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQ 115 (213)
T ss_pred ----------------cccCC--hhccc-------eEEEeccCccCC-CCcHHHHHHhHhhccCCccHHHHHHHHHHHHH
Confidence 32221 12333 999999987553 5799999976421 111112234556778888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------- 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------- 302 (317)
+++.... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 116 ~~l~~~~---~~~~--------~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~ 184 (213)
T TIGR01277 116 VGIADYL---DRLP--------EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLM 184 (213)
T ss_pred cCcHHHh---hCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 8874221 2233 6899999999999999999999999999999 9999999999999998643
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|+...+.+.+|+|
T Consensus 185 vsh~~~~~~~~~d~v 199 (213)
T TIGR01277 185 VTHHLSDARAIASQI 199 (213)
T ss_pred EeCCHHHHHhhcCeE
Confidence 335666666667764
No 196
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-35 Score=269.61 Aligned_cols=199 Identities=14% Similarity=0.200 Sum_probs=151.8
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhc---ccCCCCCCcCcEEEECcccC
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV---FENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl---~~p~~~~p~~G~I~i~g~~~ 146 (317)
++|+++|+++.|++. .+ |+++||+|++||+++|+|+||||||||+++|+|+ ++|. |++|+|.++|++
T Consensus 2 ~~l~~~~~~~~~~~~-~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~---~~~G~i~~~g~~- 71 (250)
T PRK14245 2 VKIDARDVNFWYGDF-HA-----LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT---RLEGEIRIDGRN- 71 (250)
T ss_pred cEEEEEEEEEEECCE-eE-----EeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC---CCceEEEECCEe-
Confidence 579999999999754 33 9999999999999999999999999999999997 3411 258999999986
Q ss_pred ceeeEecccCCCCcccccceeeccC--ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC--CChHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRS--DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG--DSDVEKQ 222 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~--~~~~~~~ 222 (317)
+... +...+++. ++|+||++.++. .|+.+|+.+...... ......+
T Consensus 72 ---------------------~~~~~~~~~~~~~~-------i~~v~q~~~~~~--~tv~~nl~~~~~~~~~~~~~~~~~ 121 (250)
T PRK14245 72 ---------------------IYDKGVQVDELRKN-------VGMVFQRPNPFP--KSIFENVAYGLRVNGVKDNAFIRQ 121 (250)
T ss_pred ---------------------cccccccHHHHhhh-------eEEEecCCccCc--ccHHHHHHHHHHHcCCCcHHHHHH
Confidence 3222 22334444 999999987775 499999986532211 1122345
Q ss_pred HHHHHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 223 ~~~~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
++.++++.+++.. .... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++
T Consensus 122 ~~~~~l~~~~l~~~~~~~~-~~~~--------~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 192 (250)
T PRK14245 122 RVEETLKGAALWDEVKDKL-KESA--------FALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL 192 (250)
T ss_pred HHHHHHHHcCCCcchhhhh-hCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 5677888888732 1111 2223 6899999999999999999999999999999 9999999999999997
Q ss_pred HHh-----cCCCcchhhcccCCC
Q 021147 300 LEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 300 ~~~-----~~~~~~~~~~~~~~~ 317 (317)
.+. ..|++..+.+.+|||
T Consensus 193 ~~~~tiiivtH~~~~~~~~~d~v 215 (250)
T PRK14245 193 KKDYTIVIVTHNMQQAARVSDKT 215 (250)
T ss_pred hcCCeEEEEeCCHHHHHhhCCEE
Confidence 432 446666666777764
No 197
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=2.8e-35 Score=273.03 Aligned_cols=199 Identities=15% Similarity=0.134 Sum_probs=153.4
Q ss_pred CCceEEEeEEEEcCC--------CCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEE
Q 021147 69 GSLTDAKNKILSYTP--------GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 140 (317)
Q Consensus 69 ~~~I~~~nls~~y~~--------~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~ 140 (317)
|++|+++||++.|+. ...+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.
T Consensus 1 ~~~l~~~nl~~~~~~~~~~~~~~~~~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~sG~i~ 70 (268)
T PRK10419 1 MTLLNVSGLSHHYAHGGLSGKHQHQTV-----LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES-----PSQGNVS 70 (268)
T ss_pred CceEEEeceEEEecCCccccccCceee-----EeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEE
Confidence 357999999999973 2334 999999999999999999999999999999999999 9999999
Q ss_pred ECcccCceeeEecccCCCCcccccceeeccCChH---HHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhc-cCC
Q 021147 141 YNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSS---SLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKS-MEG 215 (317)
Q Consensus 141 i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~---~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~-~~~ 215 (317)
++|++ +...+.. .+++. ++|++|++. .+....|+.+|+.+... ...
T Consensus 71 ~~g~~----------------------~~~~~~~~~~~~~~~-------i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~ 121 (268)
T PRK10419 71 WRGEP----------------------LAKLNRAQRKAFRRD-------IQMVFQDSISAVNPRKTVREIIREPLRHLLS 121 (268)
T ss_pred ECCEe----------------------ccccChhHHHHHHhc-------EEEEEcChhhccCCCCCHHHHHHHHHHhhcc
Confidence 99976 3333332 23333 999999974 35456789999865321 111
Q ss_pred -CChHHHHHHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHH
Q 021147 216 -DSDVEKQYNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELII 292 (317)
Q Consensus 216 -~~~~~~~~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l 292 (317)
........+.++++.+++. ... +... ..||+||+||++||||++.+|+++||||||+ ||+.++..+
T Consensus 122 ~~~~~~~~~~~~~l~~~gl~~~~~---~~~~--------~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~ 190 (268)
T PRK10419 122 LDKAERLARASEMLRAVDLDDSVL---DKRP--------PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGV 190 (268)
T ss_pred CCHHHHHHHHHHHHHHcCCChhHh---hCCC--------ccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHH
Confidence 1222334567788888873 221 2233 6899999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHh-------cCCCcchhhcccCCC
Q 021147 293 VDMLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 293 ~~~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
.+.|+++.+. ..|+...+...+|++
T Consensus 191 ~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i 222 (268)
T PRK10419 191 IRLLKKLQQQFGTACLFITHDLRLVERFCQRV 222 (268)
T ss_pred HHHHHHHHHHcCcEEEEEECCHHHHHHhCCEE
Confidence 9999988653 346666666666764
No 198
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-35 Score=267.05 Aligned_cols=191 Identities=15% Similarity=0.151 Sum_probs=149.8
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||+++|++ . ..++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 ~l~~~~l~~~~~~--~------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~----- 62 (232)
T PRK10771 1 MLKLTDITWLYHH--L------PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT-----PASGSLTLNGQD----- 62 (232)
T ss_pred CeEEEEEEEEECC--c------cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCee-----
Confidence 5899999999963 2 448999999999999999999999999999999999 999999999986
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-CCChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~a~ 229 (317)
+...+. .++ .++|++|++.++. .+|+.+|+.+..... .......+++.++++
T Consensus 63 -----------------~~~~~~--~~~-------~i~~~~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~ 115 (232)
T PRK10771 63 -----------------HTTTPP--SRR-------PVSMLFQENNLFS-HLTVAQNIGLGLNPGLKLNAAQREKLHAIAR 115 (232)
T ss_pred -----------------cCcCCh--hhc-------cEEEEeccccccc-CCcHHHHHhcccccccCCCHHHHHHHHHHHH
Confidence 322222 122 2999999987554 479999997642111 112233456788899
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
.+++.... +... ..||+||+||+++|||++.+|+++||||||+ ||+.+++.+.+.|+++.+.
T Consensus 116 ~~~l~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tii 184 (232)
T PRK10771 116 QMGIEDLL---ARLP--------GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLL 184 (232)
T ss_pred HcCcHHHH---hCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 98874221 2333 6899999999999999999999999999999 9999999999999988653
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+|||
T Consensus 185 i~sH~~~~~~~~~d~i 200 (232)
T PRK10771 185 MVSHSLEDAARIAPRS 200 (232)
T ss_pred EEECCHHHHHHhCCEE
Confidence 346666666666664
No 199
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2.9e-35 Score=260.77 Aligned_cols=174 Identities=16% Similarity=0.218 Sum_probs=140.5
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 l~~~~l~~~~~~~-~~-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~------ 63 (198)
T TIGR01189 1 LAARNLACSRGER-ML-----FEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR-----PDSGEVRWNGTA------ 63 (198)
T ss_pred CEEEEEEEEECCE-EE-----EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEE------
Confidence 5789999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHc
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF 231 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~ 231 (317)
+.... ..+++. ++|++|++.+++ .+|+.+|+.+....... . .+++.++++.+
T Consensus 64 ----------------~~~~~-~~~~~~-------i~~~~q~~~~~~-~~tv~~~l~~~~~~~~~-~--~~~~~~~l~~~ 115 (198)
T TIGR01189 64 ----------------LAEQR-DEPHRN-------ILYLGHLPGLKP-ELSALENLHFWAAIHGG-A--QRTIEDALAAV 115 (198)
T ss_pred ----------------cccch-HHhhhh-------eEEeccCccccc-CCcHHHHHHHHHHHcCC-c--HHHHHHHHHHc
Confidence 32222 123333 999999876543 47999999875432221 1 33567788888
Q ss_pred CCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 232 NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 232 ~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
++.... +..+ .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 116 ~l~~~~---~~~~--------~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 175 (198)
T TIGR01189 116 GLTGFE---DLPA--------AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA 175 (198)
T ss_pred CCHHHh---cCCh--------hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence 874221 2333 6899999999999999999999999999999 999999999999998754
No 200
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-35 Score=273.07 Aligned_cols=204 Identities=17% Similarity=0.179 Sum_probs=152.6
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++||+++|++. .+ |+|+||+|++||+++|+|+||||||||+++|+|+++|....|++|+|.++|.+
T Consensus 19 ~~~l~i~nl~~~~~~~-~i-----l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~--- 89 (276)
T PRK14271 19 APAMAAVNLTLGFAGK-TV-----LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRS--- 89 (276)
T ss_pred CcEEEEeeEEEEECCE-EE-----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEE---
Confidence 4589999999999754 34 99999999999999999999999999999999999843222479999999975
Q ss_pred eeEecccCCCCcccccceeeccC-ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CC-hHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRS-DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DS-DVEKQYNQ 225 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~-~~~~~~~~ 225 (317)
+..+ +...+++. ++|++|++.+|+ .|+.+|+.+...... .. ......+.
T Consensus 90 -------------------i~~~~~~~~~~~~-------i~~v~q~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~ 141 (276)
T PRK14271 90 -------------------IFNYRDVLEFRRR-------VGMLFQRPNPFP--MSIMDNVLAGVRAHKLVPRKEFRGVAQ 141 (276)
T ss_pred -------------------ccccchhHHHhhh-------eEEeccCCccCC--ccHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 3222 12233444 999999987765 599999987532211 11 12223445
Q ss_pred HHHHHcCCCcccC-CCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 226 IVATTFNCPYLSF-RDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l-~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
++++.+++..... ..+... .+||+||+||++||||++.+|+++||||||+ ||+.+++.+.+.|+++.+.
T Consensus 142 ~~l~~~~l~~~~~~~l~~~~--------~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~ 213 (276)
T PRK14271 142 ARLTEVGLWDAVKDRLSDSP--------FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRL 213 (276)
T ss_pred HHHHHcCCCchhhhHhhCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCC
Confidence 6677777631100 001222 6899999999999999999999999999999 9999999999999987542
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+||+
T Consensus 214 tiiivsH~~~~~~~~~dri 232 (276)
T PRK14271 214 TVIIVTHNLAQAARISDRA 232 (276)
T ss_pred EEEEEeCCHHHHHHhCCEE
Confidence 445666666666664
No 201
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=4.1e-35 Score=263.92 Aligned_cols=194 Identities=13% Similarity=0.165 Sum_probs=150.5
Q ss_pred eEEEeEEEEcCCC---CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 72 TDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 72 I~~~nls~~y~~~---~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|+++||++.|+++ ..+ |+++||++++|++++|+|+||||||||+++|+|+++ |++|+|+++|++
T Consensus 2 l~~~~l~~~~~~~~~~~~i-----l~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~--- 68 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQV-----LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS-----VQEGSLKVLGQE--- 68 (220)
T ss_pred EEEEEEEEEccCCCcceeE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEE---
Confidence 7899999999642 233 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChH---HHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC--CChHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSS---SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG--DSDVEKQY 223 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~---~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~--~~~~~~~~ 223 (317)
+...+.. ..++. ++|++|++.++. ..|+.+|+.+...... ......+.
T Consensus 69 -------------------~~~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~t~~~n~~~~~~~~~~~~~~~~~~~ 121 (220)
T TIGR02982 69 -------------------LYGASEKELVQLRRN-------IGYIFQAHNLLG-FLTARQNVQMALELQPNLSYQEARER 121 (220)
T ss_pred -------------------hHhcCHhHHHHHHhh-------eEEEcCChhhcC-CCCHHHHHHHHHHhccCCCHHHHHHH
Confidence 3333322 23333 999999987665 5799999987643221 11223445
Q ss_pred HHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 224 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 224 ~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
+.++++.+++.... .... .+||+||+||+++||+++.+|+++|||||++ ||+.++..+.+.|+++.+.
T Consensus 122 ~~~~l~~~~l~~~~---~~~~--------~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~ 190 (220)
T TIGR02982 122 ARAMLEAVGLGDHL---DYYP--------HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190 (220)
T ss_pred HHHHHHHcCChhhh---hcCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 67788888873211 1222 6899999999999999999999999999999 9999999999999998652
Q ss_pred -------cCCCcchhhcccCCC
Q 021147 303 -------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -------~~~~~~~~~~~~~~~ 317 (317)
..|+... .+.+|+|
T Consensus 191 ~~~tii~~sh~~~~-~~~~d~v 211 (220)
T TIGR02982 191 QGCTILIVTHDNRI-LDVADRI 211 (220)
T ss_pred cCCEEEEEeCCHHH-HhhCCEE
Confidence 3455553 3456653
No 202
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-35 Score=296.64 Aligned_cols=200 Identities=16% Similarity=0.199 Sum_probs=156.6
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+++|+++||+++|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+++|+ |++|+|.++|.+
T Consensus 3 ~~~l~~~nl~~~~~~~-~i-----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~--- 70 (506)
T PRK13549 3 EYLLEMKNITKTFGGV-KA-----LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG---TYEGEIIFEGEE--- 70 (506)
T ss_pred CceEEEeeeEEEeCCe-Ee-----ecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CCCeEEEECCEE---
Confidence 3579999999999754 34 99999999999999999999999999999999999822 389999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC--C--CChHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME--G--DSDVEKQYN 224 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~--~--~~~~~~~~~ 224 (317)
+...+....+ .+.+||++|++.++. .+|+.+|+.+..... . ......+++
T Consensus 71 -------------------~~~~~~~~~~------~~~i~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 124 (506)
T PRK13549 71 -------------------LQASNIRDTE------RAGIAIIHQELALVK-ELSVLENIFLGNEITPGGIMDYDAMYLRA 124 (506)
T ss_pred -------------------CCCCCHHHHH------HCCeEEEEeccccCC-CCcHHHHhhhcccccccCCcCHHHHHHHH
Confidence 3333332221 123999999986554 589999998754221 1 112234557
Q ss_pred HHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 225 QIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 225 ~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
.++++.+++.... +..+ .+||||||||++||||++.+|+++||||||+ ||+.++..+.+.|.++.+.
T Consensus 125 ~~~l~~~~l~~~~---~~~~--------~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~ 193 (506)
T PRK13549 125 QKLLAQLKLDINP---ATPV--------GNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHG 193 (506)
T ss_pred HHHHHHcCCCCCc---ccch--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 7888888874221 3344 7999999999999999999999999999999 9999999999999998542
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 194 ~tvi~~tH~~~~~~~~~d~v 213 (506)
T PRK13549 194 IACIYISHKLNEVKAISDTI 213 (506)
T ss_pred CEEEEEeCcHHHHHHhcCEE
Confidence 567777777777764
No 203
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=2.5e-35 Score=266.04 Aligned_cols=198 Identities=17% Similarity=0.205 Sum_probs=146.3
Q ss_pred CCCceEEEeEEEEcCCC--CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 68 IGSLTDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~--~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
..++|+++|++++|++. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~-----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~ 77 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLV-----LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ-----PQGGQVLLDGKP 77 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCcc-----ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCcEEEECCCc
Confidence 45789999999999753 233 999999999999999999999999999999999999 999999999976
Q ss_pred CceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHH---
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ--- 222 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~--- 222 (317)
+...+...+++. ++|++|++.++. .|+.+|+.+...... .....+
T Consensus 78 ----------------------~~~~~~~~~~~~-------i~~~~q~~~l~~--~tv~~nl~~~~~~~~-~~~~~~~~~ 125 (226)
T cd03248 78 ----------------------ISQYEHKYLHSK-------VSLVGQEPVLFA--RSLQDNIAYGLQSCS-FECVKEAAQ 125 (226)
T ss_pred ----------------------hHHcCHHHHHhh-------EEEEecccHHHh--hhHHHHhccccCCCC-HHHHHHHHH
Confidence 333343344444 999999987664 599999986432111 111000
Q ss_pred --HHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 223 --YNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 223 --~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
.+.+.++.+. .+....+..+. .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++
T Consensus 126 ~~~~~~~l~~l~-------~gl~~~~~~~~--~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 196 (226)
T cd03248 126 KAHAHSFISELA-------SGYDTEVGEKG--SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDW 196 (226)
T ss_pred HcCcHHHHHhcc-------ccccchhhcCC--CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 1223344441 11111111111 6899999999999999999999999999999 9999999999999987
Q ss_pred HHh-----cCCCcchhhcccCCC
Q 021147 300 LEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 300 ~~~-----~~~~~~~~~~~~~~~ 317 (317)
.+. ..|+...+.+ +|+|
T Consensus 197 ~~~~tii~~sh~~~~~~~-~d~i 218 (226)
T cd03248 197 PERRTVLVIAHRLSTVER-ADQI 218 (226)
T ss_pred cCCCEEEEEECCHHHHHh-CCEE
Confidence 532 3455555544 6653
No 204
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-35 Score=269.73 Aligned_cols=202 Identities=15% Similarity=0.172 Sum_probs=152.6
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++|+++.|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++|....|++|+|.++|.+
T Consensus 2 ~~l~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~---- 71 (249)
T PRK14253 2 NKFNIENLDLFYGEN-QA-----LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGED---- 71 (249)
T ss_pred CeEEEeccEEEECCe-ee-----eecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEE----
Confidence 479999999999753 34 99999999999999999999999999999999999832222369999999975
Q ss_pred eEecccCCCCcccccceeec-cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-C-ChHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIR-RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-D-SDVEKQYNQI 226 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~-~~~~~~~~~~ 226 (317)
+. ..+...+++. ++|++|++.++. .|+.+|+.+...... . .....+++.+
T Consensus 72 ------------------~~~~~~~~~~~~~-------i~~~~q~~~~~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 124 (249)
T PRK14253 72 ------------------IYGNIDVADLRIK-------VGMVFQKPNPFP--MSIYENVAYGLRAQGIKDKKVLDEVVER 124 (249)
T ss_pred ------------------cccccchHHHHhh-------eeEEecCCCcCc--ccHHHHHHhHHHhcCCCchHHHHHHHHH
Confidence 22 2233344444 999999987664 699999987532211 1 1222345566
Q ss_pred HHHHcCCCcc--cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 227 VATTFNCPYL--SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 227 ~a~~~~l~~~--~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
+++.+++... ... +... .+||+||+||++||||++.+|+++||||||+ ||+.+...+.+.|+++.+.
T Consensus 125 ~~~~~~l~~~~~~~~-~~~~--------~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~ 195 (249)
T PRK14253 125 SLRGAALWDEVKDRL-KSHA--------FGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNY 195 (249)
T ss_pred HHHHcCCchhhhHHh-hcCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCC
Confidence 7777776311 111 1222 6899999999999999999999999999999 9999999999999998542
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+||+
T Consensus 196 tii~~sh~~~~~~~~~d~i 214 (249)
T PRK14253 196 TIVIVTHSMQQARRISDRT 214 (249)
T ss_pred eEEEEecCHHHHHHhCCEE
Confidence 445666666666663
No 205
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-35 Score=270.57 Aligned_cols=203 Identities=15% Similarity=0.172 Sum_probs=153.0
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+++|+++||++.|++. .+ |+|+||+|++||+++|+|+||||||||+|+|+|+++|.....++|+|.++|++
T Consensus 5 ~~~l~~~~l~~~~~~~-~i-----l~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~--- 75 (259)
T PRK14260 5 IPAIKVKDLSFYYNTS-KA-----IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQN--- 75 (259)
T ss_pred cceEEEEEEEEEECCe-Ee-----ecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEe---
Confidence 4579999999999753 34 99999999999999999999999999999999999832100058999999976
Q ss_pred eeEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC--CChHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG--DSDVEKQYN 224 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~--~~~~~~~~~ 224 (317)
+.. .....++.. ++|++|++.+++ .|+.+|+.+...... ......+++
T Consensus 76 -------------------i~~~~~~~~~~~~~-------i~~v~q~~~l~~--~tv~enl~~~~~~~~~~~~~~~~~~~ 127 (259)
T PRK14260 76 -------------------IYDPRININRLRRQ-------IGMVFQRPNPFP--MSIYENVAYGVRISAKLPQADLDEIV 127 (259)
T ss_pred -------------------ccccccchHhhhhh-------eEEEecccccCC--ccHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 221 222334444 999999987775 699999987532211 112223456
Q ss_pred HHHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 225 QIVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 225 ~~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.++++.+++.. .... +... ..||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 128 ~~~l~~~~l~~~l~~~~-~~~~--------~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 198 (259)
T PRK14260 128 ESALKGAALWQEVKDKL-NKSA--------LGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS 198 (259)
T ss_pred HHHHHHcCCcchhhhHh-cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc
Confidence 67788877621 1111 1222 6899999999999999999999999999999 999999999999998753
Q ss_pred h-----cCCCcchhhcccCCC
Q 021147 302 H-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~-----~~~~~~~~~~~~~~~ 317 (317)
. ..|++..+.+.+|++
T Consensus 199 ~~tiii~tH~~~~i~~~~d~i 219 (259)
T PRK14260 199 ELTIAIVTHNMQQATRVSDFT 219 (259)
T ss_pred CCEEEEEeCCHHHHHHhcCeE
Confidence 2 456677777777764
No 206
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-35 Score=274.30 Aligned_cols=203 Identities=19% Similarity=0.206 Sum_probs=154.3
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
..++|+++||+++|++. .+ |+++||+|++||+++|+|+||||||||+++|+|+++|....|++|+|.++|.+
T Consensus 36 ~~~~l~i~~l~~~~~~~-~i-----l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~-- 107 (285)
T PRK14254 36 GETVIEARDLNVFYGDE-QA-----LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKN-- 107 (285)
T ss_pred CCceEEEEEEEEEECCE-ee-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEE--
Confidence 35689999999999754 34 99999999999999999999999999999999998721111589999999976
Q ss_pred eeeEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQ 225 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~ 225 (317)
+.. .+...+++. ++|++|++.++. .|+.+|+.+............+++.
T Consensus 108 --------------------i~~~~~~~~~~~~~-------i~~v~q~~~l~~--~tv~enl~~~~~~~~~~~~~~~~~~ 158 (285)
T PRK14254 108 --------------------VYDADVDPVALRRR-------IGMVFQKPNPFP--KSIYDNVAYGLKIQGYDGDIDERVE 158 (285)
T ss_pred --------------------ccccccchHhhhcc-------EEEEecCCccCc--CCHHHHHHHHHHHcCCcHHHHHHHH
Confidence 221 222333444 999999987665 3999999865322111122345577
Q ss_pred HHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 226 IVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 226 ~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
++++.+++.. .... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.++|+++.+.
T Consensus 159 ~~l~~~~l~~~i~~~~-~~~~--------~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~ 229 (285)
T PRK14254 159 ESLRRAALWDEVKDQL-DSSG--------LDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE 229 (285)
T ss_pred HHHHHcCCCchhHHHH-hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 7888888631 1111 2223 6999999999999999999999999999999 9999999999999998542
Q ss_pred -----cCCCcchhhcccCC
Q 021147 303 -----ADRNLSCKSCARNK 316 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~ 316 (317)
..|++..+...+||
T Consensus 230 ~tiii~tH~~~~i~~~~dr 248 (285)
T PRK14254 230 YTVVIVTHNMQQAARISDK 248 (285)
T ss_pred CEEEEEeCCHHHHHhhcCE
Confidence 45666776667776
No 207
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-35 Score=272.06 Aligned_cols=202 Identities=18% Similarity=0.188 Sum_probs=151.7
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||+++|++. .+ |+|+||+|++||+++|+|+||||||||+|+|+|++.+....|++|+|.++|++
T Consensus 9 ~~l~i~~v~~~~~~~-~i-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~---- 78 (264)
T PRK14243 9 TVLRTENLNVYYGSF-LA-----VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKN---- 78 (264)
T ss_pred eEEEEeeeEEEECCE-EE-----eecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEE----
Confidence 479999999999754 34 99999999999999999999999999999999998622101379999999976
Q ss_pred eEecccCCCCcccccceeec--cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 227 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~ 227 (317)
+. ..+...+++. ++|++|++.+++ .|+.+|+.+............+++.++
T Consensus 79 ------------------i~~~~~~~~~~~~~-------i~~v~q~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~ 131 (264)
T PRK14243 79 ------------------LYAPDVDPVEVRRR-------IGMVFQKPNPFP--KSIYDNIAYGARINGYKGDMDELVERS 131 (264)
T ss_pred ------------------ccccccChHHHhhh-------EEEEccCCcccc--ccHHHHHHhhhhhcCcchHHHHHHHHH
Confidence 21 1223334444 999999987665 399999987543211111223345556
Q ss_pred HHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 228 ATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 228 a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++.+++.. .... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|.++.+.
T Consensus 132 l~~~~l~~~l~~~~-~~~~--------~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~t 202 (264)
T PRK14243 132 LRQAALWDEVKDKL-KQSG--------LSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYT 202 (264)
T ss_pred HHHhCchhhHHHHh-cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCE
Confidence 67766521 1111 2222 6899999999999999999999999999999 9999999999999987532
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
+.|++..+...+|||
T Consensus 203 vi~vtH~~~~~~~~~d~v 220 (264)
T PRK14243 203 IIIVTHNMQQAARVSDMT 220 (264)
T ss_pred EEEEecCHHHHHHhCCEE
Confidence 456777777777764
No 208
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-35 Score=268.65 Aligned_cols=203 Identities=18% Similarity=0.179 Sum_probs=153.1
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++||++.|++. .+ |+|+||+|++||+++|+|+||||||||+++|+|+++|....|++|+|.++|.+
T Consensus 2 ~~~l~~~~l~~~~~~~-~~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~--- 72 (251)
T PRK14270 2 KIKMESKNLNLWYGEK-QA-----LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKN--- 72 (251)
T ss_pred ccEEEEEEeEEEECCe-ee-----eeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEe---
Confidence 3689999999999753 34 99999999999999999999999999999999999732111279999999986
Q ss_pred eeEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC--ChHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD--SDVEKQYN 224 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~--~~~~~~~~ 224 (317)
+.. .+....++. ++|+||++.++. .|+++|+.+....... .....+++
T Consensus 73 -------------------i~~~~~~~~~~~~~-------i~~~~q~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~ 124 (251)
T PRK14270 73 -------------------IYDKDVDVVELRKR-------VGMVFQKPNPFP--MSIYDNVAYGPRIHGIKDKKELDKIV 124 (251)
T ss_pred -------------------cccccccHHHHHhh-------eEEEecCCCcCC--CcHHHHHHhHHHhcCCCcHHHHHHHH
Confidence 322 122233444 999999987664 6999999875422111 12223456
Q ss_pred HHHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 225 QIVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 225 ~~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.++++.+++.. .... +... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 125 ~~~l~~~~l~~~~~~~~-~~~~--------~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~ 195 (251)
T PRK14270 125 EWALKKAALWDEVKDDL-KKSA--------LKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK 195 (251)
T ss_pred HHHHHHcCCchhhhhHh-hCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 67788887621 1111 1222 6899999999999999999999999999999 999999999999998754
Q ss_pred h-----cCCCcchhhcccCCC
Q 021147 302 H-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~-----~~~~~~~~~~~~~~~ 317 (317)
. ..|++..+...+|||
T Consensus 196 ~~tiiivsH~~~~~~~~~d~v 216 (251)
T PRK14270 196 EYTIVIVTHNMQQASRVSDYT 216 (251)
T ss_pred CCeEEEEEcCHHHHHHhcCEE
Confidence 2 446666666666664
No 209
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-35 Score=270.85 Aligned_cols=203 Identities=18% Similarity=0.202 Sum_probs=152.8
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
..+|+++||+++|++. .+ |+|+||+|++||++||+|+||||||||+++|+|+++|....|++|+|.++|++
T Consensus 18 ~~~l~~~nl~~~~~~~-~i-----l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~--- 88 (267)
T PRK14237 18 EIALSTKDLHVYYGKK-EA-----IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGID--- 88 (267)
T ss_pred CeEEEEeeEEEEECCe-ee-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEE---
Confidence 3589999999999653 34 99999999999999999999999999999999999732112589999999976
Q ss_pred eeEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC--CChHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG--DSDVEKQYN 224 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~--~~~~~~~~~ 224 (317)
+.. .+...+++. |+|+||++.++. .|+.+|+.++..... .......++
T Consensus 89 -------------------~~~~~~~~~~~~~~-------i~~v~q~~~~~~--~tv~eni~~~~~~~~~~~~~~~~~~~ 140 (267)
T PRK14237 89 -------------------INRKEINVYEMRKH-------IGMVFQRPNPFA--KSIYENITFALERAGVKDKKVLDEIV 140 (267)
T ss_pred -------------------cccccCChHHHhcc-------eEEEecCCcccc--ccHHHHHHhHHHhcCCCCHHHHHHHH
Confidence 221 223334444 999999987765 499999987532211 112234556
Q ss_pred HHHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 225 QIVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 225 ~~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.++++.+++.. .... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 141 ~~~l~~~~l~~~i~~~~-~~~~--------~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 211 (267)
T PRK14237 141 ETSLKQAALWDQVKDDL-HKSA--------LTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK 211 (267)
T ss_pred HHHHHHcCCCchhhhhh-cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc
Confidence 77788887631 0111 1222 6999999999999999999999999999999 999999999999998743
Q ss_pred h-----cCCCcchhhcccCCC
Q 021147 302 H-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~-----~~~~~~~~~~~~~~~ 317 (317)
. ..|+...+...+|+|
T Consensus 212 ~~tiii~tH~~~~~~~~~d~i 232 (267)
T PRK14237 212 NYTIIIVTHNMQQAARASDYT 232 (267)
T ss_pred CCEEEEEecCHHHHHHhcCEE
Confidence 2 345555555666653
No 210
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=4.6e-35 Score=257.76 Aligned_cols=174 Identities=17% Similarity=0.230 Sum_probs=133.7
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeec--c
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIR--R 170 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~--~ 170 (317)
|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++ +. .
T Consensus 8 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~----------------------~~~~~ 60 (190)
T TIGR01166 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR-----PQSGAVLIDGEP----------------------LDYSR 60 (190)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceeEEECCEE----------------------ccccc
Confidence 999999999999999999999999999999999999 999999999976 21 1
Q ss_pred CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHHcCCCcccCCCCCCEEEEec
Q 021147 171 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH 249 (317)
Q Consensus 171 ~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~h 249 (317)
.....+++. ++|++|++.......|+.+|+.+...... ......+++.++++.+++.... ....
T Consensus 61 ~~~~~~~~~-------i~~~~q~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~----- 125 (190)
T TIGR01166 61 KGLLERRQR-------VGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLR---ERPT----- 125 (190)
T ss_pred cchHHHHhh-------EEEEecChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhh---hCCh-----
Confidence 122233334 99999997422224699999987532211 1122345567888888874221 2233
Q ss_pred cchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHhcCCCcchhhc
Q 021147 250 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEHADRNLSCKSC 312 (317)
Q Consensus 250 g~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~~~~~~~~~~~ 312 (317)
.+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.++ +.-+-++++
T Consensus 126 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tili~sH 185 (190)
T TIGR01166 126 ---HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE-GMTVVISTH 185 (190)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEee
Confidence 6899999999999999999999999999999 9999999999999998543 333444443
No 211
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.7e-35 Score=327.26 Aligned_cols=209 Identities=15% Similarity=0.129 Sum_probs=174.7
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc------CCCCceEEEeEEEEcCCC--CccccccCceeeeeEe
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT------RIGSLTDAKNKILSYTPG--AWIENVGGMTLSDYDV 100 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~I~~~nls~~y~~~--~~~~~~~~L~~isl~I 100 (317)
++..|.......+..+.+++.+.+|+.+++..++.... ...+.|+++|++|+|+.. ..+ |+|+||+|
T Consensus 566 ~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~~v-----L~~inl~i 640 (1622)
T PLN03130 566 VLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNPPLEPGLPAISIKNGYFSWDSKAERPT-----LSNINLDV 640 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcccCCCCceEEEeeEEEccCCCCCce-----eeceeEEe
Confidence 44556666777888999999999999999875432111 112369999999999742 333 99999999
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcC-cEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHH
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER-AQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNR 179 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~-G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~ 179 (317)
++|+.++|+||||||||||+++|.|.++ |++ |+|.+.++
T Consensus 641 ~~Ge~vaIvG~sGSGKSTLl~lLlG~~~-----~~~GG~I~l~~~----------------------------------- 680 (1622)
T PLN03130 641 PVGSLVAIVGSTGEGKTSLISAMLGELP-----PRSDASVVIRGT----------------------------------- 680 (1622)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhhc-----cCCCceEEEcCe-----------------------------------
Confidence 9999999999999999999999999999 999 89985432
Q ss_pred HHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcH
Q 021147 180 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTD 257 (317)
Q Consensus 180 ~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSg 257 (317)
|+||+|+|.+|+. ||+|||.|+.++ +.++..++++.+++. +..+|+|..|.|+++| ..|||
T Consensus 681 -------Iayv~Q~p~Lfng--TIreNI~fg~~~------d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G--~~LSG 743 (1622)
T PLN03130 681 -------VAYVPQVSWIFNA--TVRDNILFGSPF------DPERYERAIDVTALQHDLDLLPGGDLTEIGERG--VNISG 743 (1622)
T ss_pred -------EEEEcCccccCCC--CHHHHHhCCCcc------cHHHHHHHHHHhCcHHHHHhCCCcccccccCCC--CCCCH
Confidence 9999999998875 999999998653 234578888888883 5568999999999999 89999
Q ss_pred HHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHH-HHHHH
Q 021147 258 RARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVD-MLRYC 299 (317)
Q Consensus 258 G~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~-~l~~l 299 (317)
||||||+||||++++|+++|||||+| ||+.+++.+.+ .++.+
T Consensus 744 GQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~ 787 (1622)
T PLN03130 744 GQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDE 787 (1622)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999 99999988764 45544
No 212
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.2e-35 Score=325.64 Aligned_cols=210 Identities=14% Similarity=0.148 Sum_probs=173.5
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc------CCCCceEEEeEEEEcCCC--CccccccCceeeeeEe
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT------RIGSLTDAKNKILSYTPG--AWIENVGGMTLSDYDV 100 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~I~~~nls~~y~~~--~~~~~~~~L~~isl~I 100 (317)
++..|.......+..+.+++.+.+|+.++++.+++... ...+.|+++|++|+|++. ..+ |+|+||+|
T Consensus 566 ~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~~~~~~~~~I~~~~vsF~y~~~~~~~v-----L~~inl~i 640 (1495)
T PLN03232 566 VLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPT-----LSDINLEI 640 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccCCcCCCCCcEEEEeeEEEcCCCCCCce-----eeeeEEEE
Confidence 45566777778889999999999999999976543211 112369999999999742 334 99999999
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHH
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRM 180 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~ 180 (317)
++|+.++|+||||||||||+++|.|+++ |++|.+.. ++..
T Consensus 641 ~~Ge~vaIvG~sGSGKSTLl~lLlG~~~-----~~~G~i~~----------------------------------~~~~- 680 (1495)
T PLN03232 641 PVGSLVAIVGGTGEGKTSLISAMLGELS-----HAETSSVV----------------------------------IRGS- 680 (1495)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCc-----ccCCCEEE----------------------------------ecCc-
Confidence 9999999999999999999999999999 98886541 1122
Q ss_pred HHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHH
Q 021147 181 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDR 258 (317)
Q Consensus 181 ~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG 258 (317)
|+||+|++.+|+. ||+|||.++.++ +.++..++++.+++. ...+|+|+.|.|+++| ..||||
T Consensus 681 ------Iayv~Q~p~Lf~g--TIreNI~fg~~~------~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G--~~LSGG 744 (1495)
T PLN03232 681 ------VAYVPQVSWIFNA--TVRENILFGSDF------ESERYWRAIDVTALQHDLDLLPGRDLTEIGERG--VNISGG 744 (1495)
T ss_pred ------EEEEcCccccccc--cHHHHhhcCCcc------CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCC--cccCHH
Confidence 9999999999976 999999988632 234577888888873 5568999999999999 899999
Q ss_pred HHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHH-HHHH
Q 021147 259 ARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDM-LRYC 299 (317)
Q Consensus 259 ~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~-l~~l 299 (317)
||||++||||++++|+++||||||| ||+.+++.+.+. +...
T Consensus 745 QkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~ 787 (1495)
T PLN03232 745 QKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE 787 (1495)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999 999999988665 4443
No 213
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.5e-35 Score=295.54 Aligned_cols=197 Identities=14% Similarity=0.161 Sum_probs=155.6
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||+++|++. .+ |+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+
T Consensus 3 ~~i~~~~l~~~~~~~-~~-----l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~---- 67 (501)
T PRK10762 3 ALLQLKGIDKAFPGV-KA-----LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT-----RDAGSILYLGKE---- 67 (501)
T ss_pred ceEEEeeeEEEeCCe-EE-----eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEE----
Confidence 479999999999753 34 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC---C-CC-hHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME---G-DS-DVEKQYN 224 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~---~-~~-~~~~~~~ 224 (317)
+...+....+ .+.++|++|++.++. .+|+++|+.++.... . .. ....+++
T Consensus 68 ------------------~~~~~~~~~~------~~~i~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~ 122 (501)
T PRK10762 68 ------------------VTFNGPKSSQ------EAGIGIIHQELNLIP-QLTIAENIFLGREFVNRFGRIDWKKMYAEA 122 (501)
T ss_pred ------------------CCCCCHHHHH------hCCEEEEEcchhccC-CCcHHHHhhhccccccccCccCHHHHHHHH
Confidence 3222222211 123999999986554 689999998753211 1 11 2223456
Q ss_pred HHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 225 QIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 225 ~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
.++++.+++.... +..+ .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 123 ~~~l~~~~l~~~~---~~~~--------~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~ 191 (501)
T PRK10762 123 DKLLARLNLRFSS---DKLV--------GELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQG 191 (501)
T ss_pred HHHHHHcCCCCCc---cCch--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCC
Confidence 7788888874221 3334 7999999999999999999999999999999 9999999999999998543
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|+|
T Consensus 192 ~tvii~sHd~~~~~~~~d~i 211 (501)
T PRK10762 192 RGIVYISHRLKEIFEICDDV 211 (501)
T ss_pred CEEEEEeCCHHHHHHhCCEE
Confidence 467777777788774
No 214
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-35 Score=271.00 Aligned_cols=203 Identities=19% Similarity=0.212 Sum_probs=151.1
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++|++++|++. .+ |+++||+|++||+++|+|+||||||||+++|+|+++.....|++|+|.++|++
T Consensus 19 ~~~l~~~~l~~~~~~~-~i-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~--- 89 (268)
T PRK14248 19 EHILEVKDLSIYYGEK-RA-----VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLN--- 89 (268)
T ss_pred CceEEEEEEEEEeCCc-ee-----eeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEE---
Confidence 4589999999999754 34 99999999999999999999999999999999986310001689999999986
Q ss_pred eeEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC--hHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS--DVEKQYN 224 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~--~~~~~~~ 224 (317)
+.. .+...+++. ++|++|++.+++ .|+.+|+.+........ ....+.+
T Consensus 90 -------------------i~~~~~~~~~~~~~-------i~~v~q~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~ 141 (268)
T PRK14248 90 -------------------ILDSNINVVNLRRE-------IGMVFQKPNPFP--KSIYNNITHALKYAGERRKSVLDEIV 141 (268)
T ss_pred -------------------cccccccHHHHhcc-------EEEEecCCccCc--ccHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 221 122233334 999999987775 39999998653222111 1223445
Q ss_pred HHHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 225 QIVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 225 ~~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.++++.+++.. .... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 142 ~~~l~~~~l~~~~~~~~-~~~~--------~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 212 (268)
T PRK14248 142 EESLTKAALWDEVKDRL-HSSA--------LSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE 212 (268)
T ss_pred HHHHHHcCCCcchHHHH-hcCc--------ccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc
Confidence 66677776521 0111 2222 6899999999999999999999999999999 999999999999999853
Q ss_pred -----hcCCCcchhhcccCCC
Q 021147 302 -----HADRNLSCKSCARNKV 317 (317)
Q Consensus 302 -----~~~~~~~~~~~~~~~~ 317 (317)
...|++..+.+.+|||
T Consensus 213 ~~tiii~tH~~~~~~~~~d~v 233 (268)
T PRK14248 213 EYSIIIVTHNMQQALRVSDRT 233 (268)
T ss_pred CCEEEEEEeCHHHHHHhCCEE
Confidence 2456666666777764
No 215
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-35 Score=268.68 Aligned_cols=202 Identities=17% Similarity=0.184 Sum_probs=150.3
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||++.|++. .+ |+++||+|++||+++|+|+||||||||+++|+|+++|....|++|+|.++|.+
T Consensus 2 ~~l~~~~l~~~~~~~-~~-----l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~---- 71 (250)
T PRK14262 2 PIIEIENFSAYYGEK-KA-----VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQD---- 71 (250)
T ss_pred ceEEEEeeEEEeCCc-ee-----EeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEE----
Confidence 579999999999753 33 99999999999999999999999999999999999721001289999999975
Q ss_pred eEecccCCCCcccccceeeccC--ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-C-ChHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRS--DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-D-SDVEKQYNQ 225 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~-~~~~~~~~~ 225 (317)
+... +...+++. ++|++|++.++. .|+++|+.+...... . .....+++.
T Consensus 72 ------------------~~~~~~~~~~~~~~-------i~~~~q~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~ 124 (250)
T PRK14262 72 ------------------IYDPQLDVTEYRKK-------VGMVFQKPTPFP--MSIYDNVAFGPRIHGVKSKHKLDRIVE 124 (250)
T ss_pred ------------------cccchhhHHHhhhh-------EEEEecCCccCc--ccHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 2221 12223333 999999987664 699999987532211 1 122334566
Q ss_pred HHHHHcCCCcc--cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 226 IVATTFNCPYL--SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 226 ~~a~~~~l~~~--~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
++++.+++... ... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 125 ~~l~~~~l~~~~~~~~-~~~~--------~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~ 195 (250)
T PRK14262 125 ESLKKAALWDEVKSEL-NKPG--------TRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSEN 195 (250)
T ss_pred HHHHHcCCCchhHHHH-hCCh--------hhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcC
Confidence 77777776311 111 2222 7999999999999999999999999999999 9999999999999987532
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 196 ~tili~sH~~~~~~~~~d~i 215 (250)
T PRK14262 196 YTIVIVTHNIGQAIRIADYI 215 (250)
T ss_pred cEEEEEeCCHHHHHHhCCEE
Confidence 345555555556653
No 216
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-35 Score=268.15 Aligned_cols=199 Identities=19% Similarity=0.227 Sum_probs=150.2
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCC---cCcEEEECcccC
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS---ERAQVTYNSSVG 146 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p---~~G~I~i~g~~~ 146 (317)
++|+++||+++|++. .+ |+++||+|++||+++|+||||||||||+++|+|++++. | ++|+|.++|++
T Consensus 4 ~~l~~~~l~~~~~~~-~~-----l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p~~~~~G~i~~~g~~- 73 (252)
T PRK14239 4 PILQVSDLSVYYNKK-KA-----LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLN---PEVTITGSIVYNGHN- 73 (252)
T ss_pred ceEEEEeeEEEECCe-ee-----eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccC---CCCCccceEEECCEE-
Confidence 479999999999754 34 99999999999999999999999999999999995311 5 58999999976
Q ss_pred ceeeEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CC-hHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DS-DVEKQ 222 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~-~~~~~ 222 (317)
+.. .+...+++. ++|+||++.+++ .|+.+|+.+...... .. ....+
T Consensus 74 ---------------------~~~~~~~~~~~~~~-------i~~v~q~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~ 123 (252)
T PRK14239 74 ---------------------IYSPRTDTVDLRKE-------IGMVFQQPNPFP--MSIYENVVYGLRLKGIKDKQVLDE 123 (252)
T ss_pred ---------------------CcCcccchHhhhhc-------EEEEecCCccCc--CcHHHHHHHHHHHcCCCcHHHHHH
Confidence 221 122233444 999999987765 699999987532211 11 12234
Q ss_pred HHHHHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 223 ~~~~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
++.++++.+++.. .... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.++|+++
T Consensus 124 ~~~~~l~~~~l~~~~~~~~-~~~~--------~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 194 (252)
T PRK14239 124 AVEKSLKGASIWDEVKDRL-HDSA--------LGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL 194 (252)
T ss_pred HHHHHHHHcCCchhHHHHH-hcCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHH
Confidence 5566777777521 1111 2222 6899999999999999999999999999999 9999999999999987
Q ss_pred HHh-----cCCCcchhhcccCCC
Q 021147 300 LEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 300 ~~~-----~~~~~~~~~~~~~~~ 317 (317)
.+. ..|++..+...+|||
T Consensus 195 ~~~~tii~~sH~~~~~~~~~d~i 217 (252)
T PRK14239 195 KDDYTMLLVTRSMQQASRISDRT 217 (252)
T ss_pred hhCCeEEEEECCHHHHHHhCCEE
Confidence 532 456666666666764
No 217
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=3.6e-35 Score=266.93 Aligned_cols=197 Identities=19% Similarity=0.248 Sum_probs=145.0
Q ss_pred eEEEeEEEEcCCC--CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 72 TDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 72 I~~~nls~~y~~~--~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
|+++|+++.|++. ..+ |+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 l~i~~l~~~~~~~~~~~~-----l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~---- 66 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPI-----LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD-----PTSGEILLDGVD---- 66 (238)
T ss_pred CeEEEEEEecCCCCCccc-----eeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC-----CCCCEEEECCEe----
Confidence 5789999999643 233 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
+...+...+++. ++|++|++.++. .|+.+|+.+..... . .++..+.++
T Consensus 67 ------------------~~~~~~~~~~~~-------i~~~~q~~~~~~--~tv~e~l~~~~~~~--~---~~~~~~~~~ 114 (238)
T cd03249 67 ------------------IRDLNLRWLRSQ-------IGLVSQEPVLFD--GTIAENIRYGKPDA--T---DEEVEEAAK 114 (238)
T ss_pred ------------------hhhcCHHHHHhh-------EEEECCchhhhh--hhHHHHhhccCCCC--C---HHHHHHHHH
Confidence 333343334444 999999987664 59999998653211 1 112233334
Q ss_pred HcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 230 TFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 230 ~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
..++. ...++.+....+..+. .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~--~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi 192 (238)
T cd03249 115 KANIHDFIMSLPDGYDTLVGERG--SQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTI 192 (238)
T ss_pred HcChHHHHHhhccccceeeccCC--ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 33331 1112223333332222 6899999999999999999999999999999 9999999999999987521
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
+.|++..+. .+|+|
T Consensus 193 ~~sh~~~~~~-~~d~v 207 (238)
T cd03249 193 VIAHRLSTIR-NADLI 207 (238)
T ss_pred EEeCCHHHHh-hCCEE
Confidence 345555554 46653
No 218
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-35 Score=268.91 Aligned_cols=203 Identities=20% Similarity=0.206 Sum_probs=150.9
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||++.|++.. + |+|+||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|++
T Consensus 5 ~~i~~~~l~~~~~~~~-~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~---- 74 (253)
T PRK14261 5 IILSTKNLNLWYGEKH-A-----LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGEN---- 74 (253)
T ss_pred ceEEEeeeEEEECCee-e-----eeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEE----
Confidence 4799999999997543 3 99999999999999999999999999999999997632000258999999976
Q ss_pred eEecccCCCCcccccceeeccC--ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CC-hHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRS--DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DS-DVEKQYNQ 225 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~-~~~~~~~~ 225 (317)
+... +....++. ++|++|++.+++ .|+.+|+.+...... .. ....+++.
T Consensus 75 ------------------~~~~~~~~~~~~~~-------i~~~~q~~~~~~--~tv~eni~~~~~~~~~~~~~~~~~~~~ 127 (253)
T PRK14261 75 ------------------IMDSGADVVALRRK-------IGMVFQRPNPFP--KSIYENVAYGPRIHGEKNKKTLDTIVE 127 (253)
T ss_pred ------------------ccccccchhhhhce-------EEEEecCCccCc--ccHHHHHHhhHHhcCCCCHHHHHHHHH
Confidence 3222 22233333 999999998776 399999987543211 11 22234566
Q ss_pred HHHHHcCCCc-ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 226 IVATTFNCPY-LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 226 ~~a~~~~l~~-~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
++++.+++.. .....+... ..||+||+||+++|||++.+|+++|||||++ ||+.++..+.+.|+++.+.
T Consensus 128 ~~l~~~~l~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~ 199 (253)
T PRK14261 128 KSLKGAALWDEVKDRLHDSA--------LSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEY 199 (253)
T ss_pred HHHHHhcCchhhHHHhhcCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCc
Confidence 6777777521 000012222 7899999999999999999999999999999 9999999999999987542
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|+...+.+.+|+|
T Consensus 200 tvii~sh~~~~~~~~~d~v 218 (253)
T PRK14261 200 TVIIVTHNMQQAARVSDYT 218 (253)
T ss_pred eEEEEEcCHHHHHhhCCEE
Confidence 445666666666653
No 219
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.9e-35 Score=260.82 Aligned_cols=173 Identities=16% Similarity=0.195 Sum_probs=140.0
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||++.|++. .+ |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|.+
T Consensus 2 ~l~~~~l~~~~~~~-~~-----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~----- 65 (207)
T PRK13539 2 MLEGEDLACVRGGR-VL-----FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP-----PAAGTIKLDGGD----- 65 (207)
T ss_pred EEEEEeEEEEECCe-EE-----EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEe-----
Confidence 68999999999754 34 999999999999999999999999999999999999 999999999975
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+.. .. .++. ++|++|+..++ ...|+.+|+.+........ .+++.++++.
T Consensus 66 -----------------~~~--~~-~~~~-------~~~~~~~~~~~-~~~tv~~~l~~~~~~~~~~---~~~~~~~l~~ 114 (207)
T PRK13539 66 -----------------IDD--PD-VAEA-------CHYLGHRNAMK-PALTVAENLEFWAAFLGGE---ELDIAAALEA 114 (207)
T ss_pred -----------------Ccc--hh-hHhh-------cEEecCCCcCC-CCCcHHHHHHHHHHhcCCc---HHHHHHHHHH
Confidence 211 11 3444 99999876543 3579999998654321111 2346788888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
+++.... ..+. ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 115 ~~l~~~~---~~~~--------~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 175 (207)
T PRK13539 115 VGLAPLA---HLPF--------GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLA 175 (207)
T ss_pred cCCHHHH---cCCh--------hhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 8874221 2333 6899999999999999999999999999999 999999999999998754
No 220
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=5.6e-35 Score=289.27 Aligned_cols=211 Identities=18% Similarity=0.213 Sum_probs=168.4
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||++.|...... +.+++||||+|.+||++||||+|||||||++++|+|++++.. ...+|+|.++|++
T Consensus 4 ~lL~V~nL~v~~~~~~~~--~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~-~~~~G~I~~~g~d---- 76 (539)
T COG1123 4 PLLEVENLTVEFATDGGR--VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGG-RITSGEVILDGRD---- 76 (539)
T ss_pred ceEEEeceEEEEecCCcc--eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCC-cccceEEEECCcc----
Confidence 489999999999644211 234999999999999999999999999999999999998431 2358999999986
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhh--ccCCCChHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLK--SMEGDSDVEKQYNQI 226 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~--~~~~~~~~~~~~~~~ 226 (317)
+..++.+.+++. .-+.|+|+||+|. .+++.+||.+.+.-.. .......+..+++.+
T Consensus 77 ------------------l~~l~~~~~r~~---rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~e 135 (539)
T COG1123 77 ------------------LLGLSEREMRKL---RGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVE 135 (539)
T ss_pred ------------------hhcCCHHHHHHh---ccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 445555444322 2245999999975 6788889888875332 221224556788889
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++|.....+.|+ .+||||||||+.||+||+.+|+++|+||||. ||+.++..|.++|+++.+.
T Consensus 136 lL~~Vgl~~~~~~~~yP---------heLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~ 206 (539)
T COG1123 136 LLEQVGLPDPERRDRYP---------HQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGM 206 (539)
T ss_pred HHHHcCCCChhhhccCC---------cccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCc
Confidence 99999996332224588 5999999999999999999999999999999 9999999999999999854
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
-.|++..++.++|||
T Consensus 207 a~l~ITHDl~Vva~~aDrv 225 (539)
T COG1123 207 AVLFITHDLGVVAELADRV 225 (539)
T ss_pred EEEEEcCCHHHHHHhcCeE
Confidence 678899999999986
No 221
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-35 Score=268.14 Aligned_cols=202 Identities=18% Similarity=0.196 Sum_probs=151.7
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||+++|++. .+ |+++||+|++||+++|+|+||||||||+++|+|+++|....|++|+|.++|++
T Consensus 3 ~~l~~~~l~~~~~~~-~~-----l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~---- 72 (251)
T PRK14251 3 NIISAKDVHLSYGNY-EA-----LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQN---- 72 (251)
T ss_pred ceEEEEeeEEEECCe-ee-----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEE----
Confidence 379999999999754 34 99999999999999999999999999999999998621011379999999976
Q ss_pred eEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CC-hHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DS-DVEKQYNQ 225 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~-~~~~~~~~ 225 (317)
+.. .+...+++. ++|++|++.++. .|+.+|+.+...... .. ....+++.
T Consensus 73 ------------------~~~~~~~~~~~~~~-------i~~~~q~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~ 125 (251)
T PRK14251 73 ------------------IYGSKMDLVELRKE-------VGMVFQQPTPFP--FSVYDNVAYGLKIAGVKDKELIDQRVE 125 (251)
T ss_pred ------------------cccccchHHHhhcc-------EEEEecCCccCC--CcHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 221 122233444 999999988774 599999986532211 11 12234566
Q ss_pred HHHHHcCCCcc--cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 226 IVATTFNCPYL--SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 226 ~~a~~~~l~~~--~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
++++.+++... ... +... .+||+||+||+++|||++.+|+++|||||++ ||+.++..+.+.|+++.+.
T Consensus 126 ~~l~~~~l~~~~~~~~-~~~~--------~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~ 196 (251)
T PRK14251 126 ESLKQAAIWKETKDNL-DRNA--------QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQ 196 (251)
T ss_pred HHHHHcCCCcchHHHh-ccCh--------hhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcC
Confidence 77888776310 000 1222 6899999999999999999999999999999 9999999999999987432
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 197 ~tiiiisH~~~~~~~~~d~i 216 (251)
T PRK14251 197 YTFIMVTHNLQQAGRISDQT 216 (251)
T ss_pred CeEEEEECCHHHHHhhcCEE
Confidence 456666666666764
No 222
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-35 Score=270.91 Aligned_cols=205 Identities=15% Similarity=0.131 Sum_probs=152.2
Q ss_pred CCCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccC
Q 021147 67 RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 67 ~~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~ 146 (317)
+..++|+++||+++|++. .+ |+++||+|++||+++|+|+||||||||+++|+|++++....|++|+|.++|++
T Consensus 16 ~~~~~l~~~nl~~~~~~~-~~-----l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~- 88 (274)
T PRK14265 16 PDHSVFEVEGVKVFYGGF-LA-----LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRN- 88 (274)
T ss_pred CCCceEEEeeEEEEeCCe-EE-----EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEe-
Confidence 345689999999999754 34 99999999999999999999999999999999998632111268999999976
Q ss_pred ceeeEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYN 224 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ 224 (317)
+.. .....+++. |+|+||++.+++ .|+.+|+.+............+.+
T Consensus 89 ---------------------l~~~~~~~~~~~~~-------i~~v~q~~~l~~--~tv~~nl~~~~~~~~~~~~~~~~~ 138 (274)
T PRK14265 89 ---------------------IYDSQINSVKLRRQ-------VGMVFQRPNPFP--KSIYENIAFAPRANGYKGNLDELV 138 (274)
T ss_pred ---------------------cccccchhHHHhhc-------EEEEccCCcccc--ccHHHHHHhHHHhcCchHHHHHHH
Confidence 221 122233333 999999987765 399999987532211111123345
Q ss_pred HHHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 225 QIVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 225 ~~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.++++.+++.. .... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 139 ~~~l~~~~l~~~l~~~~-~~~~--------~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~ 209 (274)
T PRK14265 139 EDSLRRAAIWEEVKDKL-KEKG--------TALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE 209 (274)
T ss_pred HHHHHHcccchhhHHHh-cCCc--------ccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc
Confidence 56677776521 1111 2222 6899999999999999999999999999999 999999999999998853
Q ss_pred h-----cCCCcchhhcccCCC
Q 021147 302 H-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~-----~~~~~~~~~~~~~~~ 317 (317)
. ..|+...+...+||+
T Consensus 210 ~~tiii~sH~~~~~~~~~d~i 230 (274)
T PRK14265 210 QYTIIMVTHNMQQASRVADWT 230 (274)
T ss_pred CCEEEEEeCCHHHHHHhCCEE
Confidence 2 456666666667764
No 223
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=9e-35 Score=267.81 Aligned_cols=206 Identities=15% Similarity=0.140 Sum_probs=151.3
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||++.|++. .+ |+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|++...+
T Consensus 5 ~~l~~~~l~~~~~~~-~i-----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~ 73 (258)
T PRK11701 5 PLLSVRGLTKLYGPR-KG-----CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA-----PDAGEVHYRMRDGQLR 73 (258)
T ss_pred ceEEEeeeEEEcCCc-ee-----eeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCcccccc
Confidence 479999999999754 34 999999999999999999999999999999999999 9999999999741000
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhh-ccCC-CChHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLK-SMEG-DSDVEKQYNQI 226 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~-~~~~-~~~~~~~~~~~ 226 (317)
.+...+...+++ .....++|++|++. .+....|+.+|+.+.. .... ......+++.+
T Consensus 74 -----------------~i~~~~~~~~~~---~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 133 (258)
T PRK11701 74 -----------------DLYALSEAERRR---LLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGD 133 (258)
T ss_pred -----------------ccccCCHHHHHH---HhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 011222222111 01123999999974 3444567888886432 1111 11223455677
Q ss_pred HHHHcCCCc-ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 227 VATTFNCPY-LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 227 ~a~~~~l~~-~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
+++.+++.. .. +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 134 ~l~~~~l~~~~~---~~~~--------~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 202 (258)
T PRK11701 134 WLERVEIDAARI---DDLP--------TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELG 202 (258)
T ss_pred HHHHcCCChhHH---hCCC--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 888888631 11 2222 6899999999999999999999999999999 9999999999999987642
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|+|
T Consensus 203 ~tii~isH~~~~~~~~~d~i 222 (258)
T PRK11701 203 LAVVIVTHDLAVARLLAHRL 222 (258)
T ss_pred cEEEEEeCCHHHHHHhcCEE
Confidence 456666666666664
No 224
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-35 Score=293.59 Aligned_cols=197 Identities=15% Similarity=0.129 Sum_probs=155.7
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++|++++|++. .+ |+|+||+|++||++||+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 4 ~~l~~~~l~~~~~~~-~i-----l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~---- 68 (510)
T PRK09700 4 PYISMAGIGKSFGPV-HA-----LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE-----PTKGTITINNIN---- 68 (510)
T ss_pred ceEEEeeeEEEcCCe-EE-----eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC-----CCccEEEECCEE----
Confidence 579999999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-c---CCC---C-hHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-M---EGD---S-DVEK 221 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~---~~~---~-~~~~ 221 (317)
+...+....++ ..++|++|++.++. .+|+.+|+.+... . ... . ....
T Consensus 69 ------------------i~~~~~~~~~~------~~i~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~ 123 (510)
T PRK09700 69 ------------------YNKLDHKLAAQ------LGIGIIYQELSVID-ELTVLENLYIGRHLTKKVCGVNIIDWREMR 123 (510)
T ss_pred ------------------CCCCCHHHHHH------CCeEEEeecccccC-CCcHHHHhhhccccccccccccccCHHHHH
Confidence 33333322211 23999999986554 5799999986431 1 010 1 1234
Q ss_pred HHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 222 QYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 222 ~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+++.++++.+++.... +..+ .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.
T Consensus 124 ~~~~~~l~~~gl~~~~---~~~~--------~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~ 192 (510)
T PRK09700 124 VRAAMMLLRVGLKVDL---DEKV--------ANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLR 192 (510)
T ss_pred HHHHHHHHHcCCCCCc---ccch--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 5677788888874221 3344 7999999999999999999999999999999 99999999999999986
Q ss_pred Hh------cCCCcchhhcccCCC
Q 021147 301 EH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 301 ~~------~~~~~~~~~~~~~~~ 317 (317)
+. ..|++..+...+|||
T Consensus 193 ~~g~tiiivsHd~~~~~~~~d~v 215 (510)
T PRK09700 193 KEGTAIVYISHKLAEIRRICDRY 215 (510)
T ss_pred hCCCEEEEEeCCHHHHHHhCCEE
Confidence 42 567777777777764
No 225
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=6.9e-35 Score=293.00 Aligned_cols=195 Identities=15% Similarity=0.123 Sum_probs=156.3
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++||+++|++. .+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 9 ~~~l~~~~l~~~~~~~-~i-----l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~--- 74 (510)
T PRK15439 9 PPLLCARSISKQYSGV-EV-----LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP-----PDSGTLEIGGNP--- 74 (510)
T ss_pred CceEEEEeEEEEeCCc-ee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE---
Confidence 4589999999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
+...+...+++ ..+||++|++.++. .+|+.+|+.+.... .....+++.+++
T Consensus 75 -------------------~~~~~~~~~~~------~~i~~v~q~~~~~~-~~tv~e~l~~~~~~---~~~~~~~~~~~l 125 (510)
T PRK15439 75 -------------------CARLTPAKAHQ------LGIYLVPQEPLLFP-NLSVKENILFGLPK---RQASMQKMKQLL 125 (510)
T ss_pred -------------------CCCCCHHHHHh------CCEEEEeccCccCC-CCcHHHHhhccccc---chHHHHHHHHHH
Confidence 33333332221 13999999986544 58999999875321 122345677888
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++.... +..+ .+||||||||++|||||+.+|+++||||||+ ||+.+...+.+.|+++.+.
T Consensus 126 ~~~~l~~~~---~~~~--------~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii 194 (510)
T PRK15439 126 AALGCQLDL---DSSA--------GSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIV 194 (510)
T ss_pred HHcCCCccc---cCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 888874221 3333 7999999999999999999999999999999 9999999999999998542
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
+.|++..+..++|||
T Consensus 195 ivtHd~~~~~~~~d~i 210 (510)
T PRK15439 195 FISHKLPEIRQLADRI 210 (510)
T ss_pred EEeCCHHHHHHhCCEE
Confidence 556777777777764
No 226
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=8.2e-35 Score=268.18 Aligned_cols=198 Identities=14% Similarity=0.045 Sum_probs=152.0
Q ss_pred CCceEEEeEEEEcCCC-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 69 GSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
.+.|+++|++++|++. ..+ |+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|+++|++
T Consensus 17 ~~~i~~~~l~~~~~~~~~~i-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~i~g~~-- 84 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPV-----LKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD-----IFDGKIVIDGID-- 84 (257)
T ss_pred CceEEEEEEEEEeCCCCCcc-----eeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC-----CCCCeEEECCEE--
Confidence 5679999999999753 233 999999999999999999999999999999999999 999999999986
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 227 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~ 227 (317)
+...+...+++. ++|++|++.+++ .|+.+|+..... . ....+..+
T Consensus 85 --------------------i~~~~~~~~~~~-------i~~v~q~~~l~~--~tv~~nl~~~~~---~---~~~~~~~~ 129 (257)
T cd03288 85 --------------------ISKLPLHTLRSR-------LSIILQDPILFS--GSIRFNLDPECK---C---TDDRLWEA 129 (257)
T ss_pred --------------------hhhCCHHHHhhh-------EEEECCCCcccc--cHHHHhcCcCCC---C---CHHHHHHH
Confidence 444555555555 999999997765 489998753211 1 11224445
Q ss_pred HHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 228 ATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 228 a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++.+++. ...++.++.+.+..++ ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++.+.
T Consensus 130 l~~~~l~~~~~~~~~~l~~~~~~~~--~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~t 207 (257)
T cd03288 130 LEIAQLKNMVKSLPGGLDAVVTEGG--ENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRT 207 (257)
T ss_pred HHHhCcHHHHhhcccccCcEeccCC--CcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCE
Confidence 5555542 1123445666665555 7999999999999999999999999999999 9999999999999886321
Q ss_pred ---cCCCcchhhcccCC
Q 021147 303 ---ADRNLSCKSCARNK 316 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~ 316 (317)
..|++..+.+ +||
T Consensus 208 iii~sh~~~~~~~-~dr 223 (257)
T cd03288 208 VVTIAHRVSTILD-ADL 223 (257)
T ss_pred EEEEecChHHHHh-CCE
Confidence 3444444443 554
No 227
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-35 Score=267.48 Aligned_cols=202 Identities=19% Similarity=0.234 Sum_probs=149.0
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||++.|++. .+ |+|+||+|++||+++|+|+||||||||+|+|+|+++|.....++|+|+++|.+
T Consensus 4 ~l~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~----- 72 (252)
T PRK14272 4 LLSAQDVNIYYGDK-QA-----VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQD----- 72 (252)
T ss_pred EEEEeeeEEEECCE-Ee-----eccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEE-----
Confidence 68999999999753 34 99999999999999999999999999999999999832000148999999976
Q ss_pred EecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC--CChHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG--DSDVEKQYNQI 226 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~--~~~~~~~~~~~ 226 (317)
+.. .+...+++. ++|++|++.++. .+|+.+|+.+...... ......+.+.+
T Consensus 73 -----------------~~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~t~~enl~~~~~~~~~~~~~~~~~~~~~ 127 (252)
T PRK14272 73 -----------------IYGPRVDPVAMRRR-------VGMVFQKPNPFP-TMSVFDNVVAGLKLAGIRDRDHLMEVAER 127 (252)
T ss_pred -----------------cccCccCHHHhhce-------eEEEeccCccCc-CCCHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 222 222233444 999999987554 4799999986532211 11122233444
Q ss_pred HHHHcCCCc-c-cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 227 VATTFNCPY-L-SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 227 ~a~~~~l~~-~-~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
+++.+++.. . ... +... .+||+||+||+++|||++.+|+++|||||++ ||+.++..+.+.|+++.+.
T Consensus 128 ~l~~~~l~~~l~~~~-~~~~--------~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~ 198 (252)
T PRK14272 128 SLRGAALWDEVKDRL-KTPA--------TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVT 198 (252)
T ss_pred HHHHcCcchhhhhhh-cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCC
Confidence 455555421 0 111 2233 7899999999999999999999999999999 9999999999999987532
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+.+.+|||
T Consensus 199 tiii~sH~~~~~~~~~d~i 217 (252)
T PRK14272 199 TIIIVTHNMHQAARVSDTT 217 (252)
T ss_pred eEEEEeCCHHHHHHhCCEE
Confidence 456777777777764
No 228
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-35 Score=267.04 Aligned_cols=203 Identities=15% Similarity=0.218 Sum_probs=151.4
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
+.|+++|++++|++. .+ |+|+||+|++||+++|+|+||||||||+++|+|++++....|++|+|+++|++
T Consensus 3 ~~l~~~nl~~~~~~~-~~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~---- 72 (252)
T PRK14256 3 NKVKLEQLNVHFGKN-HA-----VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTD---- 72 (252)
T ss_pred cEEEEEEEEEEeCCe-eE-----EecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEE----
Confidence 469999999999753 34 99999999999999999999999999999999998521001368999999976
Q ss_pred eEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC--CChHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG--DSDVEKQYNQ 225 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~--~~~~~~~~~~ 225 (317)
+.. .+...+++. ++|+||++.++. ..|+.+|+.+...... ......+++.
T Consensus 73 ------------------i~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~ 126 (252)
T PRK14256 73 ------------------IYDRGVDPVSIRRR-------VGMVFQKPNPFP-AMSIYDNVIAGYKLNGRVNRSEADEIVE 126 (252)
T ss_pred ------------------cccccCChHHhhcc-------EEEEecCCCCCC-cCcHHHHHHhHHHhcCCCCHHHHHHHHH
Confidence 221 122233444 999999987554 4799999986432211 1122234566
Q ss_pred HHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 226 IVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 226 ~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
++++.+++.. .... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 127 ~~l~~~~l~~~~~~~~-~~~~--------~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~ 197 (252)
T PRK14256 127 SSLKRVALWDEVKDRL-KSNA--------MELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEK 197 (252)
T ss_pred HHHHHcCCchhhhHHh-hCCc--------CcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC
Confidence 7788888631 0111 1222 6899999999999999999999999999999 9999999999999998542
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+||+
T Consensus 198 ~tiiivsH~~~~~~~~~d~i 217 (252)
T PRK14256 198 YTIIIVTHNMQQAARVSDYT 217 (252)
T ss_pred CcEEEEECCHHHHHhhCCEE
Confidence 445566666666663
No 229
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-34 Score=269.63 Aligned_cols=203 Identities=16% Similarity=0.207 Sum_probs=150.8
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++||+++|++.. + |+|+||+|++|++++|+|+||||||||+++|+|++++....|++|+|.++|++
T Consensus 22 ~~~l~~~~l~~~~~~~~-i-----l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~--- 92 (271)
T PRK14238 22 KVVFDTQNLNLWYGEDH-A-----LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQN--- 92 (271)
T ss_pred ceEEEEeeeEEEECCcc-e-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEE---
Confidence 45899999999997543 3 99999999999999999999999999999999998621112589999999976
Q ss_pred eeEecccCCCCcccccceeec--cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CCh-HHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSD-VEKQYN 224 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~-~~~~~~ 224 (317)
+. ..+...+++. ++|++|++.++. .|+.+|+.+...... ... ...+.+
T Consensus 93 -------------------~~~~~~~~~~~~~~-------i~~v~q~~~~~~--~tv~eni~~~~~~~~~~~~~~~~~~~ 144 (271)
T PRK14238 93 -------------------IFDKSYSVEELRTN-------VGMVFQKPNPFP--KSIYDNVTYGPKIHGIKDKKTLDEIV 144 (271)
T ss_pred -------------------cccccccHHHHhhh-------EEEEecCCcccc--ccHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 22 1223334444 999999988775 499999987542211 111 112334
Q ss_pred HHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 225 QIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 225 ~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.++++.+++. ..... +... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 145 ~~~l~~~~~~~~l~~~~-~~~~--------~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 215 (271)
T PRK14238 145 EKSLRGAAIWDELKDRL-HDNA--------YGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK 215 (271)
T ss_pred HHHHHHcCCcchHHHHH-hcCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc
Confidence 5556665431 11111 1222 6899999999999999999999999999999 999999999999998754
Q ss_pred h-----cCCCcchhhcccCCC
Q 021147 302 H-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~-----~~~~~~~~~~~~~~~ 317 (317)
. ..|++..+..++||+
T Consensus 216 ~~tiiivsH~~~~i~~~~d~i 236 (271)
T PRK14238 216 DYSIIIVTHNMQQAARISDKT 236 (271)
T ss_pred CCEEEEEEcCHHHHHHhCCEE
Confidence 2 346666666677764
No 230
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-35 Score=280.31 Aligned_cols=187 Identities=18% Similarity=0.165 Sum_probs=147.6
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||++ ||+++|++ .. + |+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 ~l~~-~l~k~~~~--~~-----~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~~~g~~----- 61 (352)
T PRK11144 1 MLEL-NFKQQLGD--LC-----L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR-----PQKGRIVLNGRV----- 61 (352)
T ss_pred CeEE-EEEEEeCC--EE-----E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE-----
Confidence 5888 99999964 22 4 8999999999999999999999999999999999 999999999976
Q ss_pred EecccCCCCcccccceeeccC----ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRS----DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 226 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~----~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~ 226 (317)
+... .....++. ++|++|++.+|+ .+|+++|+.++.. ....+++.+
T Consensus 62 -----------------~~~~~~~~~~~~~~~~-------i~~v~q~~~l~~-~~tv~enl~~~~~-----~~~~~~~~~ 111 (352)
T PRK11144 62 -----------------LFDAEKGICLPPEKRR-------IGYVFQDARLFP-HYKVRGNLRYGMA-----KSMVAQFDK 111 (352)
T ss_pred -----------------ccccccccccchhhCC-------EEEEcCCcccCC-CCcHHHHHHhhhh-----hhhHHHHHH
Confidence 2111 11122333 999999987664 5899999987532 122345778
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... +... .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 112 ~l~~~gl~~~~---~~~~--------~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~ 180 (352)
T PRK11144 112 IVALLGIEPLL---DRYP--------GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINI 180 (352)
T ss_pred HHHHcCCchhh---hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 89998874221 2233 6999999999999999999999999999999 9999999999999988653
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|+...+..++||+
T Consensus 181 tii~vTHd~~~~~~~~d~i 199 (352)
T PRK11144 181 PILYVSHSLDEILRLADRV 199 (352)
T ss_pred eEEEEecCHHHHHHhCCEE
Confidence 335555566666654
No 231
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=269.27 Aligned_cols=203 Identities=16% Similarity=0.177 Sum_probs=152.9
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++|+++.|++. .+ |+|+||+|++||+++|+|+||||||||+++|+|+++|....|++|+|.++|.+
T Consensus 23 ~~~l~~~nl~~~~~~~-~i-----l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~--- 93 (272)
T PRK14236 23 QTALEVRNLNLFYGDK-QA-----LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQN--- 93 (272)
T ss_pred CcEEEEEEEEEEECCe-eE-----eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEE---
Confidence 4589999999999754 34 99999999999999999999999999999999998721111489999999976
Q ss_pred eeEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC-C-hHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD-S-DVEKQYN 224 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~-~-~~~~~~~ 224 (317)
+.. .+...+++. ++|++|++.++.. |+.+|+.+....... . ....+++
T Consensus 94 -------------------i~~~~~~~~~~~~~-------i~~v~q~~~l~~~--tv~enl~~~~~~~~~~~~~~~~~~~ 145 (272)
T PRK14236 94 -------------------IYDKKVDVAELRRR-------VGMVFQRPNPFPK--SIYENVVYGLRLQGINNRRVLDEAV 145 (272)
T ss_pred -------------------CcccccCHHHHhcc-------EEEEecCCccCcc--cHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 221 222334444 9999999877763 999999865322211 1 2223556
Q ss_pred HHHHHHcCCCcc--cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 225 QIVATTFNCPYL--SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 225 ~~~a~~~~l~~~--~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.++++.+++... ... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 146 ~~~l~~~~l~~~~~~~~-~~~~--------~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~ 216 (272)
T PRK14236 146 ERSLRGAALWDEVKDRL-HENA--------FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS 216 (272)
T ss_pred HHHHHHcCCChhHHHHh-hCCc--------ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 777888776311 111 2222 6899999999999999999999999999999 999999999999999854
Q ss_pred h-----cCCCcchhhcccCCC
Q 021147 302 H-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~-----~~~~~~~~~~~~~~~ 317 (317)
. ..|+...+...+|||
T Consensus 217 ~~tiiivtH~~~~~~~~~d~i 237 (272)
T PRK14236 217 KYTIVIVTHNMQQAARVSDYT 237 (272)
T ss_pred CCeEEEEeCCHHHHHhhCCEE
Confidence 2 345556666666654
No 232
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-34 Score=266.25 Aligned_cols=203 Identities=18% Similarity=0.189 Sum_probs=149.2
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
..+|+++||+++|++. .+ |+++||+|.+||+++|+|+||||||||+++|+|++++....+++|+|.++|++
T Consensus 3 ~~~l~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~--- 73 (252)
T PRK14255 3 KKIITSSDVHLFYGKF-EA-----LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQN--- 73 (252)
T ss_pred cceEEEEeEEEEECCe-eE-----EecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEE---
Confidence 4579999999999753 34 99999999999999999999999999999999997421000258999999976
Q ss_pred eeEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CC-hHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DS-DVEKQYN 224 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~-~~~~~~~ 224 (317)
+.. .+...+++ .++|++|++.+++ .|+.+|+.+...... .. ....+++
T Consensus 74 -------------------~~~~~~~~~~~~~-------~i~~~~q~~~~~~--~tv~~nl~~~~~~~~~~~~~~~~~~~ 125 (252)
T PRK14255 74 -------------------IYAPNEDVVQLRK-------QVGMVFQQPNPFP--FSIYENVIYGLRLAGVKDKAVLDEAV 125 (252)
T ss_pred -------------------cccccccHHHhcC-------eEEEEECCCccCC--CcHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 221 12222333 3999999987775 599999987532211 11 1122345
Q ss_pred HHHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 225 QIVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 225 ~~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.++++.+++.. .... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 126 ~~~l~~~~l~~~i~~~~-~~~~--------~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 196 (252)
T PRK14255 126 ETSLKQAAIWDEVKDHL-HESA--------LSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD 196 (252)
T ss_pred HHHHHHcCCccchhhHH-hcCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh
Confidence 55666666521 0001 1222 6899999999999999999999999999999 999999999999998854
Q ss_pred h-----cCCCcchhhcccCCC
Q 021147 302 H-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~-----~~~~~~~~~~~~~~~ 317 (317)
. ..|+...+...+|||
T Consensus 197 ~~tii~vsH~~~~~~~~~d~i 217 (252)
T PRK14255 197 QYTIILVTHSMHQASRISDKT 217 (252)
T ss_pred CCEEEEEECCHHHHHHhCCEE
Confidence 2 446666666666664
No 233
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.9e-35 Score=260.50 Aligned_cols=190 Identities=17% Similarity=0.177 Sum_probs=146.4
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
|+++ ||+++|++. . + |+||+|++ |+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 ~~~~-~l~~~~~~~--~-----~-~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~----- 60 (214)
T cd03297 1 MLCV-DIEKRLPDF--T-----L-KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK-----PDGGTIVLNGTV----- 60 (214)
T ss_pred Ccee-eeeEecCCe--e-----e-CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEe-----
Confidence 3566 999999763 2 6 99999999 9999999999999999999999999 999999999975
Q ss_pred EecccCCCCcccccceeeccC----ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRS----DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 226 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~----~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~ 226 (317)
+... +....++ .++|++|++.+++ .+|+.+|+.+..... ......+++.+
T Consensus 61 -----------------~~~~~~~~~~~~~~~-------~i~~~~q~~~~~~-~~t~~~~l~~~~~~~-~~~~~~~~~~~ 114 (214)
T cd03297 61 -----------------LFDSRKKINLPPQQR-------KIGLVFQQYALFP-HLNVRENLAFGLKRK-RNREDRISVDE 114 (214)
T ss_pred -----------------cccccchhhhhhHhh-------cEEEEecCCccCC-CCCHHHHHHHHHhhC-CHHHHHHHHHH
Confidence 2111 1112233 3999999987553 579999998653221 11223445677
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... +... .+||+||+||++||||++.+|+++||||||+ ||+.+++.+.+.++++.+.
T Consensus 115 ~l~~~~l~~~~---~~~~--------~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 183 (214)
T cd03297 115 LLDLLGLDHLL---NRYP--------AQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNI 183 (214)
T ss_pred HHHHcCCHhHh---hcCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCc
Confidence 88888874221 2333 6899999999999999999999999999999 9999999999999998653
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+|++
T Consensus 184 tiii~sH~~~~~~~~~d~i 202 (214)
T cd03297 184 PVIFVTHDLSEAEYLADRI 202 (214)
T ss_pred EEEEEecCHHHHHHhcCEE
Confidence 345566665666653
No 234
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-35 Score=270.71 Aligned_cols=194 Identities=15% Similarity=0.214 Sum_probs=146.3
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||+++|+++..+ |+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 6 ~l~~~~l~~~~~~~~~i-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~----- 70 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTA-----LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR-----LASGKISILGQP----- 70 (272)
T ss_pred eEEEEeEEEEecCCcEE-----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE-----
Confidence 69999999999643444 999999999999999999999999999999999999 999999999975
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccc-cchhhHHHHHHhhhcc-----CCCChHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV-NFVIFVVDGLAVLKSM-----EGDSDVEKQYN 224 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~-~~~~tv~eni~~~~~~-----~~~~~~~~~~~ 224 (317)
+.. ..+ ...++|+||++.+. ....++.+|+.+.... ........+++
T Consensus 71 -----------------i~~----~~~------~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 123 (272)
T PRK15056 71 -----------------TRQ----ALQ------KNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIV 123 (272)
T ss_pred -----------------hHH----hhc------cceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHH
Confidence 210 111 11389999987541 2234677777543110 01112234456
Q ss_pred HHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 225 QIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 225 ~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
.++++.+++.... ...+ .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 124 ~~~l~~~gl~~~~---~~~~--------~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g 192 (272)
T PRK15056 124 TAALARVDMVEFR---HRQI--------GELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEG 192 (272)
T ss_pred HHHHHHcCChhHh---cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCC
Confidence 6778888874221 2333 6899999999999999999999999999999 9999999999999988542
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|++
T Consensus 193 ~tviivsH~~~~~~~~~d~v 212 (272)
T PRK15056 193 KTMLVSTHNLGSVTEFCDYT 212 (272)
T ss_pred CEEEEEeCCHHHHHHhCCEE
Confidence 345566666666653
No 235
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-34 Score=266.74 Aligned_cols=202 Identities=16% Similarity=0.162 Sum_probs=152.6
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||+++|++. .+ |+|+||+|++|++++|+|+||||||||+++|+|+++|+...+.+|+|.++|++
T Consensus 6 ~~l~~~nl~~~~~~~-~i-----l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~---- 75 (261)
T PRK14258 6 PAIKVNNLSFYYDTQ-KI-----LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQN---- 75 (261)
T ss_pred ceEEEeeEEEEeCCe-eE-----eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEE----
Confidence 479999999999754 33 99999999999999999999999999999999999943333358999999875
Q ss_pred eEecccCCCCcccccceeec--cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC-C-hHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD-S-DVEKQYNQ 225 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~-~-~~~~~~~~ 225 (317)
+. ..+...+++. ++|++|++.++. .|+.+|+.+....... . ....+.+.
T Consensus 76 ------------------i~~~~~~~~~~~~~-------i~~~~q~~~l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~ 128 (261)
T PRK14258 76 ------------------IYERRVNLNRLRRQ-------VSMVHPKPNLFP--MSVYDNVAYGVKIVGWRPKLEIDDIVE 128 (261)
T ss_pred ------------------hhccccchHHhhcc-------EEEEecCCccCc--ccHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 21 1122233444 999999987665 6999999865322111 1 12234566
Q ss_pred HHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 226 IVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 226 ~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
++++.+++.. .... +... ..||+||+||+++||+++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 129 ~~l~~~~l~~~~~~~~-~~~~--------~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~ 199 (261)
T PRK14258 129 SALKDADLWDEIKHKI-HKSA--------LDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLR 199 (261)
T ss_pred HHHHHcCCcchhhhHh-cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 7788887621 1111 2232 6899999999999999999999999999999 9999999999999987532
Q ss_pred -------cCCCcchhhcccCCC
Q 021147 303 -------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -------~~~~~~~~~~~~~~~ 317 (317)
..|++..+.+.+|+|
T Consensus 200 ~~~tiiivsH~~~~i~~~~d~i 221 (261)
T PRK14258 200 SELTMVIVSHNLHQVSRLSDFT 221 (261)
T ss_pred CCCEEEEEECCHHHHHHhcCEE
Confidence 456677777777764
No 236
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=265.75 Aligned_cols=202 Identities=19% Similarity=0.206 Sum_probs=149.8
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||+++|++. .+ |+++||+|++|++++|+|+||||||||+++|+|+++|....|++|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~~~~-~i-----l~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~---- 72 (251)
T PRK14249 3 PKIKIRGVNFFYHKH-QV-----LKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNEN---- 72 (251)
T ss_pred ceEEEEEEEEEECCe-eE-----ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEE----
Confidence 579999999999754 34 99999999999999999999999999999999999933222347999999976
Q ss_pred eEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC-C-hHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD-S-DVEKQYNQ 225 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~-~-~~~~~~~~ 225 (317)
+.. .+...+++. ++|++|++.+++ .|+.+|+.+....... . ....+++.
T Consensus 73 ------------------~~~~~~~~~~~~~~-------i~~v~q~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~ 125 (251)
T PRK14249 73 ------------------IYSPNLDVVNLRKR-------VGMVFQQPNPFP--KSIFDNVAFGPRMLGTTAQSRLDEVVE 125 (251)
T ss_pred ------------------ccccccChHHhhce-------EEEEecCCccCc--CcHHHHHhhHHHhcCCChhhHHHHHHH
Confidence 221 222334444 999999998775 3999999875432111 1 11234455
Q ss_pred HHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 226 IVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 226 ~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
++++.+++.. ..+. +... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 126 ~~l~~~~l~~~l~~~~-~~~~--------~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 196 (251)
T PRK14249 126 KSLRQAALWDEVKDNL-HKSG--------LALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQN 196 (251)
T ss_pred HHHHHhCCchhhhhHh-hCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcC
Confidence 5667666531 1111 1222 6899999999999999999999999999999 9999999999999987421
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|++
T Consensus 197 ~tilivsh~~~~~~~~~d~i 216 (251)
T PRK14249 197 YTIAIVTHNMQQAARASDWT 216 (251)
T ss_pred CEEEEEeCCHHHHHhhCCEE
Confidence 345556666666653
No 237
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.7e-35 Score=251.98 Aligned_cols=177 Identities=16% Similarity=0.171 Sum_probs=147.9
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
++++++.+.-++. .+ |+++||++.+||+++|+||||||||||+|+++.|+. |++|.++|.|++
T Consensus 4 le~kq~~y~a~~a-~i-----l~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis-----p~~G~l~f~Ge~------ 66 (223)
T COG4619 4 LELKQVGYLAGDA-KI-----LNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS-----PTSGTLLFEGED------ 66 (223)
T ss_pred hHHHHHHhhcCCC-ee-----ecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC-----CCCceEEEcCcc------
Confidence 4455555433333 33 999999999999999999999999999999999999 999999999998
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHc
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF 231 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~ 231 (317)
++.++++.+|++ |+|+-|.|.+|.. ||.||+.|...... ...+.+...+.+..+
T Consensus 67 ----------------vs~~~pea~Rq~-------VsY~~Q~paLfg~--tVeDNlifP~~~r~-rr~dr~aa~~llar~ 120 (223)
T COG4619 67 ----------------VSTLKPEAYRQQ-------VSYCAQTPALFGD--TVEDNLIFPWQIRN-RRPDRAAALDLLARF 120 (223)
T ss_pred ----------------ccccChHHHHHH-------HHHHHcCcccccc--chhhccccchHHhc-cCCChHHHHHHHHHc
Confidence 778999999998 9999999999986 99999987542211 223455677888888
Q ss_pred CCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 232 NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 232 ~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
+++...+ ...+ .+||||++||++++|-|...|++|+|||||| ||+.+++.+.++|.++..
T Consensus 121 ~l~~~~L--~k~i--------t~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~ 181 (223)
T COG4619 121 ALPDSIL--TKNI--------TELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVR 181 (223)
T ss_pred CCchhhh--cchh--------hhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhh
Confidence 8864333 2333 6999999999999999999999999999999 999999999999988863
No 238
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.8e-34 Score=264.83 Aligned_cols=206 Identities=16% Similarity=0.155 Sum_probs=149.2
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||++.|++.. + |+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|++..
T Consensus 2 ~~l~~~~l~~~~~~~~-~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~-- 68 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGK-G-----CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA-----PDHGTATYIMRSGA-- 68 (253)
T ss_pred ceEEEeeeEEEeCCce-E-----eecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEEeccccc--
Confidence 4799999999997543 3 999999999999999999999999999999999999 99999999986410
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhcccccccccc-ccchhhHHHHHHhhh-ccC-CCChHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK-VNFVIFVVDGLAVLK-SME-GDSDVEKQYNQI 226 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~-~~~~~tv~eni~~~~-~~~-~~~~~~~~~~~~ 226 (317)
...+...+.....+ .+.+.++|++|++.. +....++.+|+.+.. ... ........++.+
T Consensus 69 ---------------~~~~~~~~~~~~~~---~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 130 (253)
T TIGR02323 69 ---------------ELELYQLSEAERRR---LMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHD 130 (253)
T ss_pred ---------------ccccccCCHHHHHH---hhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 00011222221110 112249999998742 334457788875421 111 111123455677
Q ss_pred HHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 227 VATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 227 ~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
+++.+++. ... +..+ ..|||||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 131 ~l~~l~l~~~~~---~~~~--------~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~ 199 (253)
T TIGR02323 131 WLEEVEIDPTRI---DDLP--------RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLG 199 (253)
T ss_pred HHHHcCCChhhh---hcCc--------hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 88888873 111 2333 7899999999999999999999999999999 9999999999999987543
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+|++
T Consensus 200 ~tii~vsH~~~~~~~~~d~~ 219 (253)
T TIGR02323 200 LAVIIVTHDLGVARLLAQRL 219 (253)
T ss_pred CEEEEEeCCHHHHHHhcCEE
Confidence 445666666666653
No 239
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=9.9e-35 Score=261.79 Aligned_cols=187 Identities=19% Similarity=0.219 Sum_probs=148.0
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||+++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 l~l~~v~~~~~~~-~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~~~~------ 63 (223)
T TIGR03740 1 LETKNLSKRFGKQ-TA-----VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR-----PTSGEIIFDGHP------ 63 (223)
T ss_pred CEEEeEEEEECCE-EE-----EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEe------
Confidence 5789999999754 34 999999999999999999999999999999999999 999999999975
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHc
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF 231 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~ 231 (317)
+.... .+ .++|+||++.++. .+|+++|+.+........ ..++.++++.+
T Consensus 64 ----------------~~~~~----~~-------~~~~~~q~~~~~~-~~t~~~~~~~~~~~~~~~---~~~~~~~l~~~ 112 (223)
T TIGR03740 64 ----------------WTRKD----LH-------KIGSLIESPPLYE-NLTARENLKVHTTLLGLP---DSRIDEVLNIV 112 (223)
T ss_pred ----------------ccccc----cc-------cEEEEcCCCCccc-cCCHHHHHHHHHHHcCCC---HHHHHHHHHHc
Confidence 21111 11 2999999886553 479999998654221111 23567788888
Q ss_pred CCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cC
Q 021147 232 NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------AD 304 (317)
Q Consensus 232 ~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~ 304 (317)
++.... .... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+. ..
T Consensus 113 ~l~~~~---~~~~--------~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~s 181 (223)
T TIGR03740 113 DLTNTG---KKKA--------KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSS 181 (223)
T ss_pred CCcHHH---hhhH--------hhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 874221 2223 6899999999999999999999999999999 9999999999999988542 45
Q ss_pred CCcchhhcccCCC
Q 021147 305 RNLSCKSCARNKV 317 (317)
Q Consensus 305 ~~~~~~~~~~~~~ 317 (317)
|+..++...+||+
T Consensus 182 H~~~~~~~~~d~i 194 (223)
T TIGR03740 182 HILSEVQQLADHI 194 (223)
T ss_pred CCHHHHHHhcCEE
Confidence 6666666667664
No 240
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-34 Score=261.98 Aligned_cols=192 Identities=12% Similarity=0.081 Sum_probs=151.4
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||+++|++. .+ ++++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~-~i-----l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~------ 63 (232)
T cd03300 1 IELENVSKFYGGF-VA-----LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET-----PTSGEILLDGKD------ 63 (232)
T ss_pred CEEEeEEEEeCCe-ee-----eccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEE------
Confidence 5789999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC-ChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD-SDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~a~~ 230 (317)
+...+. .++ .++|++|++.++. .+|+.+|+.+....... .....+++.++++.
T Consensus 64 ----------------~~~~~~--~~~-------~i~~~~q~~~~~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~ 117 (232)
T cd03300 64 ----------------ITNLPP--HKR-------PVNTVFQNYALFP-HLTVFENIAFGLRLKKLPKAEIKERVAEALDL 117 (232)
T ss_pred ----------------cCcCCh--hhc-------ceEEEecccccCC-CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 322222 122 3999999987654 57999999765322221 22334566778888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------- 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------- 302 (317)
+++.... .... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++.+.
T Consensus 118 ~~l~~~~---~~~~--------~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii 186 (232)
T cd03300 118 VQLEGYA---NRKP--------SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVF 186 (232)
T ss_pred cCCchhh---cCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 8874221 2222 6899999999999999999999999999999 9999999999999988653
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|++..+.+.+|++
T Consensus 187 ~sh~~~~~~~~~d~i 201 (232)
T cd03300 187 VTHDQEEALTMSDRI 201 (232)
T ss_pred EeCCHHHHHHhcCEE
Confidence 346666666667764
No 241
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=8.6e-35 Score=254.81 Aligned_cols=162 Identities=14% Similarity=0.211 Sum_probs=134.5
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++|++++| + |+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~-----~-----l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~---- 63 (182)
T cd03215 3 PVLEVRGLSVKG-----A-----VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP-----PASGEITLDGKP---- 63 (182)
T ss_pred cEEEEeccEEEe-----e-----ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEE----
Confidence 479999999999 3 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCCh-HHHHHHHHHhhhhccccccccc--cccchhhHHHHHHhhhccCCCChHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDS-SSLRNRMRCKAHKIGCEPSVIR--KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 226 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~ig~v~Q~~~--~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~ 226 (317)
+..++. ...++ .++|++|++. .+...+|+++|+.+...
T Consensus 64 ------------------~~~~~~~~~~~~-------~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-------------- 104 (182)
T cd03215 64 ------------------VTRRSPRDAIRA-------GIAYVPEDRKREGLVLDLSVAENIALSSL-------------- 104 (182)
T ss_pred ------------------CCccCHHHHHhC-------CeEEecCCcccCcccCCCcHHHHHHHHhh--------------
Confidence 333332 22233 3999999852 34445688888864311
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
||+||+||+++|||++.+|+++|||||++ ||+.++..+.+.++++.+.
T Consensus 105 ----------------------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~t 156 (182)
T cd03215 105 ----------------------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKA 156 (182)
T ss_pred ----------------------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCE
Confidence 89999999999999999999999999999 9999999999999988542
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
+.|+...+.+.+|+|
T Consensus 157 iii~sh~~~~~~~~~d~v 174 (182)
T cd03215 157 VLLISSELDELLGLCDRI 174 (182)
T ss_pred EEEEeCCHHHHHHhCCEE
Confidence 446666676777764
No 242
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.3e-34 Score=251.65 Aligned_cols=157 Identities=20% Similarity=0.282 Sum_probs=131.2
Q ss_pred eEEEeEEEEcCCC-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 72 TDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 72 I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
|+++|++++|++. ..+ ++++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 i~~~~l~~~~~~~~~~~-----l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~----- 65 (173)
T cd03246 1 LEVENVSFRYPGAEPPV-----LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR-----PTSGRVRLDGAD----- 65 (173)
T ss_pred CEEEEEEEEcCCCCCcc-----eeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCeEEECCEE-----
Confidence 5789999999753 233 999999999999999999999999999999999999 999999999976
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+...+...+++. ++|++|++.+++ .|+.+|+
T Consensus 66 -----------------~~~~~~~~~~~~-------i~~~~q~~~~~~--~tv~~~l----------------------- 96 (173)
T cd03246 66 -----------------ISQWDPNELGDH-------VGYLPQDDELFS--GSIAENI----------------------- 96 (173)
T ss_pred -----------------cccCCHHHHHhh-------eEEECCCCcccc--CcHHHHC-----------------------
Confidence 444454445544 999999986654 3777765
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------c
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------A 303 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~ 303 (317)
||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++.+. .
T Consensus 97 ------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~ 152 (173)
T cd03246 97 ------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVI 152 (173)
T ss_pred ------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 89999999999999999999999999999 9999999999999988542 3
Q ss_pred CCCcchhhcccCCC
Q 021147 304 DRNLSCKSCARNKV 317 (317)
Q Consensus 304 ~~~~~~~~~~~~~~ 317 (317)
.|+...+. .+|+|
T Consensus 153 sh~~~~~~-~~d~v 165 (173)
T cd03246 153 AHRPETLA-SADRI 165 (173)
T ss_pred eCCHHHHH-hCCEE
Confidence 45555553 46653
No 243
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=290.09 Aligned_cols=196 Identities=13% Similarity=0.124 Sum_probs=154.3
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||++.|++. .+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 3 ~~l~~~~l~~~~~~~-~i-----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~---- 67 (501)
T PRK11288 3 PYLSFDGIGKTFPGV-KA-----LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ-----PDAGSILIDGQE---- 67 (501)
T ss_pred ceEEEeeeEEEECCE-EE-----EeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEE----
Confidence 579999999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCCh-HHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc--CC--CChHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDS-SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM--EG--DSDVEKQYN 224 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~--~~--~~~~~~~~~ 224 (317)
+...+. ..+++ .|||++|++.++. .+|+.+|+.+.... .. ......+++
T Consensus 68 ------------------i~~~~~~~~~~~-------~i~~v~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 121 (501)
T PRK11288 68 ------------------MRFASTTAALAA-------GVAIIYQELHLVP-EMTVAENLYLGQLPHKGGIVNRRLLNYEA 121 (501)
T ss_pred ------------------CCCCCHHHHHhC-------CEEEEEechhccC-CCCHHHHHHhcccccccCCCCHHHHHHHH
Confidence 322222 12233 3999999986554 57999999875321 11 112234567
Q ss_pred HHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 225 QIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 225 ~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
.++++.+++.... ...+ .+|||||+||++||||++.+|+++||||||+ ||+.+...+.+.|+++.+.
T Consensus 122 ~~~l~~~~l~~~~---~~~~--------~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g 190 (501)
T PRK11288 122 REQLEHLGVDIDP---DTPL--------KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEG 190 (501)
T ss_pred HHHHHHcCCCCCc---CCch--------hhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 7888888874221 2333 7999999999999999999999999999999 9999999999999987542
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|||
T Consensus 191 ~tiiiitHd~~~~~~~~d~i 210 (501)
T PRK11288 191 RVILYVSHRMEEIFALCDAI 210 (501)
T ss_pred CEEEEEeCCHHHHHHhCCEE
Confidence 456666666777764
No 244
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.4e-34 Score=257.34 Aligned_cols=182 Identities=18% Similarity=0.208 Sum_probs=136.7
Q ss_pred eEEEeEEEEcCCC----CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 72 TDAKNKILSYTPG----AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 72 I~~~nls~~y~~~----~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
|+++||+++|++. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|+++|.
T Consensus 1 l~~~~l~~~~~~~~~~~~~i-----l~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~-----~~~G~i~~~g~--- 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFT-----LKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE-----KLSGSVSVPGS--- 67 (204)
T ss_pred CEEeEEEEecCCCCccccce-----eeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC-----CCCCeEEEcCE---
Confidence 5799999999754 234 999999999999999999999999999999999999 99999998762
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 227 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~ 227 (317)
|+|++|++.+++ .|+++|+.+.... . .++..++
T Consensus 68 ---------------------------------------i~~~~q~~~l~~--~t~~enl~~~~~~---~---~~~~~~~ 100 (204)
T cd03250 68 ---------------------------------------IAYVSQEPWIQN--GTIRENILFGKPF---D---EERYEKV 100 (204)
T ss_pred ---------------------------------------EEEEecCchhcc--CcHHHHhccCCCc---C---HHHHHHH
Confidence 788888877664 5899999864321 1 1123444
Q ss_pred HHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHH-HHHHHHHh-
Q 021147 228 ATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVD-MLRYCLEH- 302 (317)
Q Consensus 228 a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~-~l~~l~~~- 302 (317)
++.+++. ...++.++.+.+.... ..||+||+||+++|||++.+|+++|||||++ ||+.+.+.+.+ +++++.+.
T Consensus 101 ~~~~~l~~~~~~~~~~~~~~~~~~~--~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~ 178 (204)
T cd03250 101 IKACALEPDLEILPDGDLTEIGEKG--INLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNN 178 (204)
T ss_pred HHHcCcHHHHHhccCcccceecCCC--CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCC
Confidence 5555541 1223334444443333 6899999999999999999999999999999 99999998887 45554332
Q ss_pred -----cCCCcchhhcccCC
Q 021147 303 -----ADRNLSCKSCARNK 316 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~ 316 (317)
..|....+.. +|+
T Consensus 179 ~tvi~~sh~~~~~~~-~d~ 196 (204)
T cd03250 179 KTRILVTHQLQLLPH-ADQ 196 (204)
T ss_pred CEEEEEeCCHHHHhh-CCE
Confidence 2344444444 554
No 245
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.5e-34 Score=280.13 Aligned_cols=187 Identities=19% Similarity=0.228 Sum_probs=144.8
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
|+|+||+|++||+++|+|+||||||||+|+|+|+++ |++|+|+++|++.. ..+...+
T Consensus 40 l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~-----p~~G~I~idG~~~~------------------~~i~~~~ 96 (382)
T TIGR03415 40 VANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP-----VSRGSVLVKDGDGS------------------IDVANCD 96 (382)
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEECCEecc------------------cccccCC
Confidence 999999999999999999999999999999999999 99999999996200 0023333
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccc
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGD 251 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~ 251 (317)
...+++. ..+.++|+||++.+++ .+|+.+|+.++..... ......+++.++++.+++... .+.+.
T Consensus 97 ~~~l~~~---r~~~i~~vfQ~~~l~p-~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~--~~~~~-------- 162 (382)
T TIGR03415 97 AATLRRL---RTHRVSMVFQKFALMP-WLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQW--ADKKP-------- 162 (382)
T ss_pred HHHHHHH---hcCCEEEEECCCcCCC-CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh--hcCCh--------
Confidence 3333211 1134999999998665 5799999998753322 223334567788999997422 22333
Q ss_pred hhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------cCCCcchhhcccCCC
Q 021147 252 LLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
.+|||||+||++|||||+.+|+++||||||+ ||+.++..+++.|.++.+. ..|++..+...+|||
T Consensus 163 -~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI 235 (382)
T TIGR03415 163 -GELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRI 235 (382)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 6899999999999999999999999999999 9999999999999988653 456677776777764
No 246
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-34 Score=252.39 Aligned_cols=158 Identities=22% Similarity=0.294 Sum_probs=131.2
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
++++||+++|++. .+ |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~-~~-----l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~------ 63 (173)
T cd03230 1 IEVRNLSKRYGKK-TA-----LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK-----PDSGEIKVLGKD------ 63 (173)
T ss_pred CEEEEEEEEECCe-ee-----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEE------
Confidence 5789999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHc
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF 231 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~ 231 (317)
+.... ..+++. ++|++|++.++. ..|+.+|+.
T Consensus 64 ----------------~~~~~-~~~~~~-------i~~~~q~~~~~~-~~tv~~~~~----------------------- 95 (173)
T cd03230 64 ----------------IKKEP-EEVKRR-------IGYLPEEPSLYE-NLTVRENLK----------------------- 95 (173)
T ss_pred ----------------cccch-Hhhhcc-------EEEEecCCcccc-CCcHHHHhh-----------------------
Confidence 32222 233333 999999986554 357777753
Q ss_pred CCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cC
Q 021147 232 NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------AD 304 (317)
Q Consensus 232 ~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~ 304 (317)
||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+. ..
T Consensus 96 -----------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~t 152 (173)
T cd03230 96 -----------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSS 152 (173)
T ss_pred -----------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 89999999999999999999999999999 9999999999999998643 34
Q ss_pred CCcchhhcccCCC
Q 021147 305 RNLSCKSCARNKV 317 (317)
Q Consensus 305 ~~~~~~~~~~~~~ 317 (317)
|+...+...+|++
T Consensus 153 h~~~~~~~~~d~i 165 (173)
T cd03230 153 HILEEAERLCDRV 165 (173)
T ss_pred CCHHHHHHhCCEE
Confidence 5566666666653
No 247
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.2e-34 Score=279.07 Aligned_cols=189 Identities=17% Similarity=0.143 Sum_probs=147.5
Q ss_pred EEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEe
Q 021147 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 152 (317)
Q Consensus 73 ~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~ 152 (317)
++ ||+++|++. . + ++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 2 ~~-~l~~~~~~~--~-----~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~~~g~~------- 60 (354)
T TIGR02142 2 SA-RFSKRLGDF--S-----L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR-----PDEGEIVLNGRT------- 60 (354)
T ss_pred EE-EEEEEECCE--E-----E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE-------
Confidence 44 899999642 2 7 8999999999999999999999999999999999 999999999986
Q ss_pred cccCCCCcccccceeeccC----ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 153 QEYTIPRGVRHGELVIRRS----DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 153 Q~~~l~~~~~~~~~~~~~~----~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
+... .....++. ++|++|++.+|+ .+|+.+|+.++..... .....+++.+++
T Consensus 61 ---------------i~~~~~~~~~~~~~~~-------i~~v~q~~~l~~-~~tv~enl~~~~~~~~-~~~~~~~~~~~l 116 (354)
T TIGR02142 61 ---------------LFDSRKGIFLPPEKRR-------IGYVFQEARLFP-HLSVRGNLRYGMKRAR-PSERRISFERVI 116 (354)
T ss_pred ---------------CccCccccccchhhCC-------eEEEecCCccCC-CCcHHHHHHHHhhccC-hhHHHHHHHHHH
Confidence 2111 11122333 999999987664 5799999987643211 122344577888
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++.... +... .+|||||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 117 ~~~gL~~~~---~~~~--------~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~ti 185 (354)
T TIGR02142 117 ELLGIGHLL---GRLP--------GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPI 185 (354)
T ss_pred HHcCChhHh---cCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 888874221 2333 6999999999999999999999999999999 9999999999999998653
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|+|
T Consensus 186 iivtH~~~~~~~~~d~i 202 (354)
T TIGR02142 186 LYVSHSLQEVLRLADRV 202 (354)
T ss_pred EEEecCHHHHHHhCCEE
Confidence 446666666666664
No 248
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.6e-34 Score=265.75 Aligned_cols=194 Identities=13% Similarity=0.077 Sum_probs=148.0
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCC----cCcEEEECcccC
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS----ERAQVTYNSSVG 146 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p----~~G~I~i~g~~~ 146 (317)
+|+++||+++| +. .+ |+++||+|++||+++|+|+||||||||+++|+|+++ | ++|+|+++|++
T Consensus 4 ~l~~~~l~~~~-~~-~i-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~~~~~G~i~~~g~~- 70 (254)
T PRK10418 4 QIELRNIALQA-AQ-PL-----VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP-----AGVRQTAGRVLLDGKP- 70 (254)
T ss_pred EEEEeCeEEEe-cc-ce-----ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCcCCEEEECCee-
Confidence 69999999999 33 34 999999999999999999999999999999999999 7 99999999976
Q ss_pred ceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhccCCCChHHHHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQ 225 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~~~~~~~~~~~~~ 225 (317)
+...+ ..++ .++|++|++. .|....|+.+|+.+....... ....+++.
T Consensus 71 ---------------------i~~~~--~~~~-------~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 119 (254)
T PRK10418 71 ---------------------VAPCA--LRGR-------KIATIMQNPRSAFNPLHTMHTHARETCLALGK-PADDATLT 119 (254)
T ss_pred ---------------------ccccc--cccc-------eEEEEecCCccccCccccHHHHHHHHHHHcCC-ChHHHHHH
Confidence 22111 1112 3999999975 355556888887543211111 12235677
Q ss_pred HHHHHcCCCccc-CCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 226 IVATTFNCPYLS-FRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~-l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
++++.+++.... .. +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 120 ~~l~~~~l~~~~~~~-~~~~--------~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~ 190 (254)
T PRK10418 120 AALEAVGLENAARVL-KLYP--------FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKR 190 (254)
T ss_pred HHHHHcCCCChhhhh-hcCC--------cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhc
Confidence 888888874210 00 2222 6899999999999999999999999999999 9999999999999988653
Q ss_pred ------cCCCcchhhcccCCC
Q 021147 303 ------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ------~~~~~~~~~~~~~~~ 317 (317)
..|+...+.+.+|||
T Consensus 191 g~til~~sH~~~~~~~~~d~v 211 (254)
T PRK10418 191 ALGMLLVTHDMGVVARLADDV 211 (254)
T ss_pred CcEEEEEecCHHHHHHhCCEE
Confidence 446666666667764
No 249
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.5e-34 Score=288.97 Aligned_cols=190 Identities=15% Similarity=0.090 Sum_probs=150.2
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.||+++||+++|++.. + |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+
T Consensus 2 ~~l~~~~l~~~~~~~~-i-----l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~-----p~~G~i~~~~~~---- 66 (490)
T PRK10938 2 SSLQISQGTFRLSDTK-T-----LQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP-----LLSGERQSQFSH---- 66 (490)
T ss_pred ceEEEEeEEEEcCCee-e-----cccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCceEEECCcc----
Confidence 3799999999997543 4 999999999999999999999999999999999999 999999998865
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhcccccccccc--cc-----chhhHHHHHHhhhccCCCChHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK--VN-----FVIFVVDGLAVLKSMEGDSDVEKQ 222 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~--~~-----~~~tv~eni~~~~~~~~~~~~~~~ 222 (317)
+...+...+++. +||++|++.. +. ..+|+.+|+.+. ....+
T Consensus 67 ------------------~~~~~~~~~~~~-------i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 114 (490)
T PRK10938 67 ------------------ITRLSFEQLQKL-------VSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-------VKDPA 114 (490)
T ss_pred ------------------cccCCHHHHHHH-------hceeccCcchhhcccchhhccccHHHhcccc-------hhHHH
Confidence 222333333333 9999997642 11 135677766432 12234
Q ss_pred HHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 223 ~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
++.++++.+++.... +..+ .+||||||||++||||++.+|+++||||||+ ||+.+...+.+.|+++.+
T Consensus 115 ~~~~~l~~~~l~~~~---~~~~--------~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 183 (490)
T PRK10938 115 RCEQLAQQFGITALL---DRRF--------KYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ 183 (490)
T ss_pred HHHHHHHHcCCHhhh---hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh
Confidence 577888888874222 3344 7999999999999999999999999999999 999999999999999864
Q ss_pred h------cCCCcchhhcccCCC
Q 021147 302 H------ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~------~~~~~~~~~~~~~~~ 317 (317)
. ..|++..+...+|+|
T Consensus 184 ~g~tvii~tH~~~~~~~~~d~v 205 (490)
T PRK10938 184 SGITLVLVLNRFDEIPDFVQFA 205 (490)
T ss_pred cCCeEEEEeCCHHHHHhhCCEE
Confidence 3 567777777778764
No 250
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.5e-35 Score=253.97 Aligned_cols=161 Identities=21% Similarity=0.301 Sum_probs=132.7
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++|+++.|++. .+ ++++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 i~~~~l~~~~~~~-~~-----l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~------ 63 (178)
T cd03229 1 LELKNVSKRYGQK-TV-----LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE-----PDSGSILIDGED------ 63 (178)
T ss_pred CEEEEEEEEECCe-EE-----EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE------
Confidence 5789999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCC--hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSD--SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~--~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
+..++ ...+++. ++|++|++.++. ..|+.+|+.+.
T Consensus 64 ----------------~~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~t~~~~l~~~------------------- 100 (178)
T cd03229 64 ----------------LTDLEDELPPLRRR-------IGMVFQDFALFP-HLTVLENIALG------------------- 100 (178)
T ss_pred ----------------ccccchhHHHHhhc-------EEEEecCCccCC-CCCHHHheeec-------------------
Confidence 33333 2333333 999999886443 35676665421
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
||+||+||+++|||++.+|+++|||||++ ||+.++..+.+.++++.+.
T Consensus 101 -------------------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii 155 (178)
T cd03229 101 -------------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVV 155 (178)
T ss_pred -------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 89999999999999999999999999999 9999999999999988653
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+|++
T Consensus 156 i~sH~~~~~~~~~d~i 171 (178)
T cd03229 156 LVTHDLDEAARLADRV 171 (178)
T ss_pred EEeCCHHHHHHhcCEE
Confidence 346666666666653
No 251
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.9e-34 Score=262.63 Aligned_cols=192 Identities=18% Similarity=0.192 Sum_probs=150.6
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++|+++.|++. .+ |+++||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 i~i~~l~~~~~~~-~i-----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~i~g~~------ 63 (237)
T TIGR00968 1 IEIANISKRFGSF-QA-----LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ-----PDSGRIRLNGQD------ 63 (237)
T ss_pred CEEEEEEEEECCe-ee-----eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEE------
Confidence 5799999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~ 230 (317)
+...+. .++ .++|+||++.++. ..|+.+|+.+...... ......+++.++++.
T Consensus 64 ----------------~~~~~~--~~~-------~i~~~~q~~~~~~-~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~ 117 (237)
T TIGR00968 64 ----------------ATRVHA--RDR-------KIGFVFQHYALFK-HLTVRDNIAFGLEIRKHPKAKIKARVEELLEL 117 (237)
T ss_pred ----------------cCcCCh--hhc-------CEEEEecChhhcc-CCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHH
Confidence 322221 122 3999999987554 5799999986543211 112234556778888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------- 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------- 302 (317)
+++.... +... ..||+||+||+++|||++.+|+++|||||++ ||+.++..+.+.|+++.+.
T Consensus 118 ~~l~~~~---~~~~--------~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli 186 (237)
T TIGR00968 118 VQLEGLG---DRYP--------NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVF 186 (237)
T ss_pred cCCHhHh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 8873211 2222 6899999999999999999999999999999 9999999999999987653
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+|++
T Consensus 187 ~sH~~~~~~~~~d~i 201 (237)
T TIGR00968 187 VTHDQEEAMEVADRI 201 (237)
T ss_pred EeCCHHHHHhhcCEE
Confidence 346666666667764
No 252
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-34 Score=250.89 Aligned_cols=188 Identities=15% Similarity=0.187 Sum_probs=150.9
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|+++.+++++.+|.+..... |+|+|++|.+||+++++||||||||||+++++|+.+ |..|+|.+||++
T Consensus 1 M~~l~~~~~sl~y~g~~~~~----le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~-----P~~G~i~l~~r~--- 68 (259)
T COG4525 1 MCMLNVSHLSLSYEGKPRSA----LEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT-----PSRGSIQLNGRR--- 68 (259)
T ss_pred CceeehhheEEecCCcchhh----hhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC-----cccceEEECCEe---
Confidence 46788999999997654222 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCCh-HHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD-VEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~-~~~~~~~~~ 227 (317)
+.+-..+ =|+|||+..+++ .+++.||++|+.....-.+ ...+...+.
T Consensus 69 -------------------i~gPgae------------rgvVFQ~~~LlP-Wl~~~dNvafgL~l~Gi~k~~R~~~a~q~ 116 (259)
T COG4525 69 -------------------IEGPGAE------------RGVVFQNEALLP-WLNVIDNVAFGLQLRGIEKAQRREIAHQM 116 (259)
T ss_pred -------------------ccCCCcc------------ceeEeccCccch-hhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3322211 578888887665 6899999999876544333 333444456
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHhcCCC
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEHADRN 306 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~~~~~ 306 (317)
+..+++.. ..++|. .+||||||||+.|||||+.+|+.++||||.. ||.-+++.+++++-++.+.....
T Consensus 117 l~~VgL~~--~~~~~i---------~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~ 185 (259)
T COG4525 117 LALVGLEG--AEHKYI---------WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQ 185 (259)
T ss_pred HHHhCccc--ccccce---------EeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCe
Confidence 66777632 223444 6999999999999999999999999999999 99999999999999988776666
Q ss_pred cchhh
Q 021147 307 LSCKS 311 (317)
Q Consensus 307 ~~~~~ 311 (317)
+-++.
T Consensus 186 ~lliT 190 (259)
T COG4525 186 VLLIT 190 (259)
T ss_pred EEEEe
Confidence 54443
No 253
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-34 Score=295.73 Aligned_cols=207 Identities=15% Similarity=0.150 Sum_probs=157.4
Q ss_pred CCceEEEeEEEEcCCCCc-----cccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECc
Q 021147 69 GSLTDAKNKILSYTPGAW-----IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~-----~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g 143 (317)
.++|+++||++.|+.... .....+|++|||+|++||++||+|+||||||||+|+|+|+++ |++|+|+++|
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~-----p~~G~I~~~g 385 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE-----SQGGEIIFNG 385 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCcEEEECC
Confidence 358999999999962100 000112999999999999999999999999999999999999 9999999999
Q ss_pred ccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhccCC--CChHH
Q 021147 144 SVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSMEG--DSDVE 220 (317)
Q Consensus 144 ~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~~~--~~~~~ 220 (317)
++ +...+....+. +.+.|+|+||++. .++..+||.+|+.+...... .....
T Consensus 386 ~~----------------------i~~~~~~~~~~----~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~ 439 (623)
T PRK10261 386 QR----------------------IDTLSPGKLQA----LRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAA 439 (623)
T ss_pred EE----------------------CCcCCHHHHHH----hcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHH
Confidence 86 33333222211 1234999999973 34456899999986432211 11233
Q ss_pred HHHHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 221 KQYNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 221 ~~~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
.+++.++++.++++ ... +.++ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.++|++
T Consensus 440 ~~~~~~~L~~~gL~~~~~--~~~~---------~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~ 508 (623)
T PRK10261 440 AARVAWLLERVGLLPEHA--WRYP---------HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD 508 (623)
T ss_pred HHHHHHHHHHcCCCHHHh--hCCc---------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 45677889999874 221 2333 6999999999999999999999999999999 999999999999999
Q ss_pred HHHh-------cCCCcchhhcccCCC
Q 021147 299 CLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 299 l~~~-------~~~~~~~~~~~~~~~ 317 (317)
+.+. ..|++..+..++|||
T Consensus 509 l~~~~g~tvi~isHdl~~v~~~~dri 534 (623)
T PRK10261 509 LQRDFGIAYLFISHDMAVVERISHRV 534 (623)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 8653 457788888888875
No 254
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.1e-34 Score=256.87 Aligned_cols=181 Identities=17% Similarity=0.191 Sum_probs=141.0
Q ss_pred CceEEEeEEEEcCCC-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 70 SLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 70 ~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+.|+++|++++|++. ..+ |+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 5 ~~l~~~~l~~~~~~~~~~~-----l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~--- 71 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPV-----LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE-----AEEGKIEIDGID--- 71 (207)
T ss_pred CeEEEEEEEEEeCCCCccc-----ccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCeEEECCEE---
Confidence 569999999999753 233 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
+...+...+++. |+|++|++.+++ .|+++|+.+.... . .+++.+++
T Consensus 72 -------------------~~~~~~~~~~~~-------i~~v~q~~~~~~--~tv~~~l~~~~~~---~---~~~~~~~l 117 (207)
T cd03369 72 -------------------ISTIPLEDLRSS-------LTIIPQDPTLFS--GTIRSNLDPFDEY---S---DEEIYGAL 117 (207)
T ss_pred -------------------hHHCCHHHHHhh-------EEEEecCCcccC--ccHHHHhcccCCC---C---HHHHHHHh
Confidence 434444444444 999999997665 4999999754211 1 12233333
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+ + +... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 118 ~---~-------~~~~--------~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii 179 (207)
T cd03369 118 R---V-------SEGG--------LNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILT 179 (207)
T ss_pred h---c-------cCCC--------CcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2 1 1122 6899999999999999999999999999999 9999999999999987421
Q ss_pred cCCCcchhhcccCC
Q 021147 303 ADRNLSCKSCARNK 316 (317)
Q Consensus 303 ~~~~~~~~~~~~~~ 316 (317)
..|++..+.. +|+
T Consensus 180 ~th~~~~~~~-~d~ 192 (207)
T cd03369 180 IAHRLRTIID-YDK 192 (207)
T ss_pred EeCCHHHHhh-CCE
Confidence 2344444443 455
No 255
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-34 Score=269.42 Aligned_cols=204 Identities=19% Similarity=0.168 Sum_probs=151.7
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
..++|+++||+++|++. .+ |+|+||+|++||+++|+|+||||||||+++|+|+.+.....|++|+|.++|++
T Consensus 36 ~~~~l~~~~l~~~~~~~-~i-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~-- 107 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEF-EA-----VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGED-- 107 (286)
T ss_pred CceEEEEeeeEEEECCE-EE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEE--
Confidence 35679999999999754 34 99999999999999999999999999999999985311001389999999975
Q ss_pred eeeEecccCCCCcccccceeeccC--ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC-C-hHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRS--DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD-S-DVEKQY 223 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~-~-~~~~~~ 223 (317)
+... +...+++. ++|++|++.++. .|+.+|+.+....... . ....++
T Consensus 108 --------------------i~~~~~~~~~~~~~-------i~~v~q~~~l~~--~tv~enl~~~~~~~~~~~~~~~~~~ 158 (286)
T PRK14275 108 --------------------IYGKFTDEVLLRKK-------IGMVFQKPNPFP--KSIFDNIAYGPRLHGINDKKQLEEI 158 (286)
T ss_pred --------------------hhhcccchHHhhhc-------EEEECCCCCCCc--cCHHHHHHhHHHhcCCCcHHHHHHH
Confidence 2211 12233444 999999998775 3999999875432111 1 122345
Q ss_pred HHHHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 224 NQIVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 224 ~~~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+.++++.+++.. .... +... ..|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.
T Consensus 159 ~~~~l~~~~l~~~l~~~~-~~~~--------~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~ 229 (286)
T PRK14275 159 VEKSLRKAALWDEVSDRL-DKNA--------LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR 229 (286)
T ss_pred HHHHHHHhCCccchhhHh-hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 566777777521 1111 1222 6899999999999999999999999999999 99999999999999875
Q ss_pred H-----hcCCCcchhhcccCCC
Q 021147 301 E-----HADRNLSCKSCARNKV 317 (317)
Q Consensus 301 ~-----~~~~~~~~~~~~~~~~ 317 (317)
. ...|++..+...+||+
T Consensus 230 ~~~tvIivsH~~~~~~~~~d~i 251 (286)
T PRK14275 230 GSYTIMIVTHNMQQASRVSDYT 251 (286)
T ss_pred cCCeEEEEeCCHHHHHHhCCEE
Confidence 4 2456666666667764
No 256
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-34 Score=263.36 Aligned_cols=200 Identities=16% Similarity=0.193 Sum_probs=148.4
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
-+++||++.|++. .+ |+++||+|++||+++|+|+||||||||+++|+|++++....|++|+|.++|++
T Consensus 6 ~~~~~l~~~~~~~-~~-----l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~------ 73 (251)
T PRK14244 6 ASVKNLNLWYGSK-QI-----LFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGID------ 73 (251)
T ss_pred EEeeeEEEEECCe-ee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEe------
Confidence 4689999999743 33 99999999999999999999999999999999998622111479999999975
Q ss_pred ecccCCCCcccccceeeccCC--hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC---CChHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSD--SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG---DSDVEKQYNQI 226 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~--~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~---~~~~~~~~~~~ 226 (317)
+...+ ...+++. ++|+||++.+++. |+.+|+.+...... ......+++.+
T Consensus 74 ----------------i~~~~~~~~~~~~~-------i~~v~q~~~~~~~--tv~~ni~~~~~~~~~~~~~~~~~~~~~~ 128 (251)
T PRK14244 74 ----------------VYSVDTNVVLLRAK-------VGMVFQKPNPFPK--SIYDNVAYGPKLHGLAKNKKKLDEIVEK 128 (251)
T ss_pred ----------------hHhcccchHHHhhh-------EEEEecCcccccC--CHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 22221 1233444 9999999877763 89999987532111 11223345667
Q ss_pred HHHHcCCCcc--cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 227 VATTFNCPYL--SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 227 ~a~~~~l~~~--~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
+++.+++... ... +... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 129 ~l~~~~l~~~~~~~~-~~~~--------~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 199 (251)
T PRK14244 129 SLTSVGLWEELGDRL-KDSA--------FELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNF 199 (251)
T ss_pred HHHHcCCCchhhhHh-hcCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCC
Confidence 7888886311 001 1222 6899999999999999999999999999999 9999999999999987431
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 200 tiiiisH~~~~~~~~~d~i 218 (251)
T PRK14244 200 TIIVVTHSMKQAKKVSDRV 218 (251)
T ss_pred eEEEEeCCHHHHHhhcCEE
Confidence 345566666666653
No 257
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-34 Score=260.79 Aligned_cols=191 Identities=16% Similarity=0.185 Sum_probs=150.0
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++|++++|++ . + |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|.+
T Consensus 1 l~~~~l~~~~~~-~-~-----l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~-----p~~G~v~i~g~~------ 62 (235)
T cd03299 1 LKVENLSKDWKE-F-K-----LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK-----PDSGKILLNGKD------ 62 (235)
T ss_pred CeeEeEEEEeCC-c-e-----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEE------
Confidence 578999999974 2 3 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~ 230 (317)
+...+. .++ .++|++|++.++ ..+|+.+|+.+...... ......+++.++++.
T Consensus 63 ----------------~~~~~~--~~~-------~i~~~~q~~~~~-~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 116 (235)
T cd03299 63 ----------------ITNLPP--EKR-------DISYVPQNYALF-PHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEM 116 (235)
T ss_pred ----------------cCcCCh--hHc-------CEEEEeecCccC-CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 322222 122 399999998655 35799999986532221 123344567788888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------- 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------- 302 (317)
+++.... .... .+||+||+||++||||++.+|++++|||||+ ||+.+++.+.+.++++...
T Consensus 117 ~~l~~~~---~~~~--------~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili 185 (235)
T cd03299 117 LGIDHLL---NRKP--------ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLH 185 (235)
T ss_pred cCChhHH---hcCc--------ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 8874221 2233 6899999999999999999999999999999 9999999999999987543
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|++
T Consensus 186 ~tH~~~~~~~~~d~i 200 (235)
T cd03299 186 VTHDFEEAWALADKV 200 (235)
T ss_pred EecCHHHHHHhCCEE
Confidence 345555566666653
No 258
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-34 Score=252.35 Aligned_cols=195 Identities=16% Similarity=0.198 Sum_probs=157.7
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+.+|||++..++.. |+++||++++||++||+||||||||||+|.|+|-+. |++|++.++|.+
T Consensus 1 mi~a~nls~~~~Gr~l------l~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~-----p~~G~v~~~g~~----- 64 (259)
T COG4559 1 MIRAENLSYSLAGRRL------LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS-----PDSGEVTLNGVP----- 64 (259)
T ss_pred CeeeeeeEEEeeccee------ccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC-----CCCCeEeeCCcC-----
Confidence 6899999999976654 999999999999999999999999999999999999 999999999987
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-cC--CCChHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-ME--GDSDVEKQYNQIV 227 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~~--~~~~~~~~~~~~~ 227 (317)
+..|.+.++.++ -+++||+..+ .+..||.|-+.++.. +. .+.+++.+-..++
T Consensus 65 -----------------l~~~~~~~lA~~-------raVlpQ~s~l-aFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~a 119 (259)
T COG4559 65 -----------------LNSWPPEELARH-------RAVLPQNSSL-AFPFTVQEVVQMGRIPHRSGREPEEDERIAAQA 119 (259)
T ss_pred -----------------hhhCCHHHHHHH-------hhhcccCccc-ccceEHHHHHHhcccccccCCCchhhHHHHHHH
Confidence 778888888777 8899998763 334599999998863 22 2222333334556
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceecc------ccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGI------PPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~------~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+.++++.... +..+ ..|||||+||+.+||.|+. ++++|+|||||| ||...+..++.+.+++.
T Consensus 120 la~~d~~~la---~R~y--------~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la 188 (259)
T COG4559 120 LAATDLSGLA---GRDY--------RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLA 188 (259)
T ss_pred HHHcChhhhh---ccch--------hhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHH
Confidence 6666653222 3333 5899999999999999985 445899999999 99999999999999987
Q ss_pred Hh------cCCCcchhhcccCCC
Q 021147 301 EH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 301 ~~------~~~~~~~~~~~~~~~ 317 (317)
.. -=|+++.++.++||+
T Consensus 189 ~~g~~V~~VLHDLNLAA~YaDri 211 (259)
T COG4559 189 REGGAVLAVLHDLNLAAQYADRI 211 (259)
T ss_pred hcCCcEEEEEccchHHHHhhhee
Confidence 54 236688888899885
No 259
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-34 Score=264.58 Aligned_cols=203 Identities=15% Similarity=0.099 Sum_probs=152.9
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
..+.+++++++|++. .+ |+++||+|++||+++|+|+||||||||+++|+|+++|....|++|+|+++|++
T Consensus 7 ~~~~~~~~~~~~~~~-~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~---- 76 (261)
T PRK14263 7 IVMDCKLDKIFYGNF-MA-----VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQD---- 76 (261)
T ss_pred ceEEEEeEEEEeCCE-EE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEe----
Confidence 358999999999754 34 99999999999999999999999999999999999832111379999999986
Q ss_pred eEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 227 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~ 227 (317)
+.. .....+++. ++|++|++.++ .+|+.+|+.+.............++.++
T Consensus 77 ------------------i~~~~~~~~~~~~~-------i~~v~q~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~ 129 (261)
T PRK14263 77 ------------------VYGKGVDPVVVRRY-------IGMVFQQPNPF--SMSIFDNVAFGLRLNRYKGDLGDRVKHA 129 (261)
T ss_pred ------------------ccccccchHhhhhc-------eEEEecCCccc--cccHHHHHHHHHhhcCchHHHHHHHHHH
Confidence 221 122233444 99999998766 3799999987643221112223457778
Q ss_pred HHHcCCCcc-cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 228 ATTFNCPYL-SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 228 a~~~~l~~~-~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
++.+++... ....+... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 130 l~~~~l~~~i~~~~~~~~--------~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~ti 201 (261)
T PRK14263 130 LQGAALWDEVKDKLKVSG--------LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTI 201 (261)
T ss_pred HHHcCCchhhhhhhhCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeE
Confidence 888886311 00001222 6899999999999999999999999999999 9999999999999998532
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 202 i~isH~~~~i~~~~d~v 218 (261)
T PRK14263 202 ALVTHNMQQAIRVADTT 218 (261)
T ss_pred EEEeCCHHHHHHhCCEE
Confidence 445666666667764
No 260
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.9e-34 Score=251.61 Aligned_cols=143 Identities=17% Similarity=0.243 Sum_probs=123.5
Q ss_pred eEEEeEEEEcCCCC-ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 72 TDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 72 I~~~nls~~y~~~~-~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
|+++|++++|++.. .+ ++++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 i~~~~~~~~~~~~~~~~-----l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~----- 65 (178)
T cd03247 1 LSINNVSFSYPEQEQQV-----LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK-----PQQGEITLDGVP----- 65 (178)
T ss_pred CEEEEEEEEeCCCCccc-----eEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCCEEEECCEE-----
Confidence 57899999997542 34 999999999999999999999999999999999999 999999999975
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+... ...+++. ++|++|++.+++ .|+++|+
T Consensus 66 -----------------~~~~-~~~~~~~-------i~~~~q~~~~~~--~tv~~~i----------------------- 95 (178)
T cd03247 66 -----------------VSDL-EKALSSL-------ISVLNQRPYLFD--TTLRNNL----------------------- 95 (178)
T ss_pred -----------------HHHH-HHHHHhh-------EEEEccCCeeec--ccHHHhh-----------------------
Confidence 3222 2233443 999999987664 4788776
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
. ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++.
T Consensus 96 -------------~--------~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~ 145 (178)
T cd03247 96 -------------G--------RRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL 145 (178)
T ss_pred -------------c--------ccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 1 5899999999999999999999999999999 99999999999999873
No 261
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-34 Score=263.25 Aligned_cols=205 Identities=17% Similarity=0.172 Sum_probs=151.3
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
..++|+++|++++|++.. + |+|+||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.++|.-.
T Consensus 7 ~~~~i~~~~~~~~~~~~~-~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~-----~~~G~v~~~G~~~- 74 (257)
T PRK14246 7 AEDVFNISRLYLYINDKA-I-----LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE-----IYDSKIKVDGKVL- 74 (257)
T ss_pred hhhheeeeeEEEecCCce-e-----EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCcCceeEcCEEE-
Confidence 346899999999997543 3 999999999999999999999999999999999999 8898888877420
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC--ChHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD--SDVEKQYNQ 225 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~--~~~~~~~~~ 225 (317)
+. +..+...+...+++. ++|++|++.+++ .+|+.+|+.+....... .....+++.
T Consensus 75 ----~~-----------g~~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~ 131 (257)
T PRK14246 75 ----YF-----------GKDIFQIDAIKLRKE-------VGMVFQQPNPFP-HLSIYDNIAYPLKSHGIKEKREIKKIVE 131 (257)
T ss_pred ----EC-----------CcccccCCHHHHhcc-------eEEEccCCccCC-CCcHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 00 000222233334444 999999987553 46999999876432111 122334567
Q ss_pred HHHHHcCCCcc--cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 226 IVATTFNCPYL--SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 226 ~~a~~~~l~~~--~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
++++.+++... ...+. .. ..||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|.++.+.
T Consensus 132 ~~~~~~~l~~~~~~~~~~-~~--------~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 202 (257)
T PRK14246 132 ECLRKVGLWKEVYDRLNS-PA--------SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNE 202 (257)
T ss_pred HHHHHcCCCccchhhhcC-Cc--------ccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcC
Confidence 78888887311 11112 22 6899999999999999999999999999999 9999999999999987431
Q ss_pred -----cCCCcchhhcccCC
Q 021147 303 -----ADRNLSCKSCARNK 316 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~ 316 (317)
..|+...+...+|+
T Consensus 203 ~tiilvsh~~~~~~~~~d~ 221 (257)
T PRK14246 203 IAIVIVSHNPQQVARVADY 221 (257)
T ss_pred cEEEEEECCHHHHHHhCCE
Confidence 44555555555555
No 262
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3e-34 Score=289.44 Aligned_cols=210 Identities=16% Similarity=0.137 Sum_probs=156.3
Q ss_pred CCceEEEeEEEEcCCC---CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 69 GSLTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~---~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
.++|+++||+++|+++ ..+ |++|||+|.+||++||+||||||||||+|+|+|+++|....|++|+|.++|++
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~-----l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~ 77 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTV-----VNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGES 77 (529)
T ss_pred CceEEEeceEEEecCCCCceee-----eeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEe
Confidence 3589999999999631 233 99999999999999999999999999999999999832122379999999986
Q ss_pred CceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhcccccccccc-ccchhhHHHHHHhhhc-c-CCCChHHHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK-VNFVIFVVDGLAVLKS-M-EGDSDVEKQ 222 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~-~~~~~tv~eni~~~~~-~-~~~~~~~~~ 222 (317)
+..++...+... ..+.+||++|++.. +....++.+|+.+... . ........+
T Consensus 78 ----------------------i~~~~~~~~~~~---~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (529)
T PRK15134 78 ----------------------LLHASEQTLRGV---RGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARG 132 (529)
T ss_pred ----------------------cccCCHHHHHHH---hcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHH
Confidence 333333222110 01239999999752 4445789998875321 1 111223456
Q ss_pred HHHHHHHHcCCCcc-cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCPYL-SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 223 ~~~~~a~~~~l~~~-~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
++.++++.+++... ... ...+ .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.
T Consensus 133 ~~~~~l~~~gl~~~~~~~-~~~~--------~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~ 203 (529)
T PRK15134 133 EILNCLDRVGIRQAAKRL-TDYP--------HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQ 203 (529)
T ss_pred HHHHHHHHCCCCChHHHH-hhCC--------cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHH
Confidence 67788999987421 011 2233 6999999999999999999999999999999 99999999999999975
Q ss_pred Hh-------cCCCcchhhcccCCC
Q 021147 301 EH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 301 ~~-------~~~~~~~~~~~~~~~ 317 (317)
+. ..|++..+..++|||
T Consensus 204 ~~~g~tvi~vtHd~~~~~~~~dri 227 (529)
T PRK15134 204 QELNMGLLFITHNLSIVRKLADRV 227 (529)
T ss_pred HhcCCeEEEEcCcHHHHHHhcCEE
Confidence 43 567777777777775
No 263
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-34 Score=282.18 Aligned_cols=198 Identities=14% Similarity=0.137 Sum_probs=160.9
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.+.++++|++|+|++... |++|||++.+||++||+|+||||||||+|+|+|.|+ |++|+|+++|+.
T Consensus 6 ~~ll~~~~i~K~FggV~A------L~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~-----p~~G~I~~~G~~--- 71 (500)
T COG1129 6 PPLLELRGISKSFGGVKA------LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP-----PDSGEILIDGKP--- 71 (500)
T ss_pred cceeeeecceEEcCCcee------eccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc-----CCCceEEECCEE---
Confidence 457999999999986543 999999999999999999999999999999999999 999999999987
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-----CChHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-----DSDVEKQY 223 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-----~~~~~~~~ 223 (317)
..-.++.+-++. .|++|+|+..+++ ++||++|+.++..... +.....++
T Consensus 72 -------------------~~~~sp~~A~~~------GI~~V~QEl~L~p-~LsVaeNifLgre~~~~~g~id~~~m~~~ 125 (500)
T COG1129 72 -------------------VAFSSPRDALAA------GIATVHQELSLVP-NLSVAENIFLGREPTRRFGLIDRKAMRRR 125 (500)
T ss_pred -------------------ccCCCHHHHHhC------CcEEEeechhccC-CccHHHHhhcccccccCCCccCHHHHHHH
Confidence 333454443332 4899999998665 7999999988753221 22344556
Q ss_pred HHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 224 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 224 ~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
..+++..+++... + ...+ .+||.||||.++||||+..+++++||||||+ |+....+.+++.++++...
T Consensus 126 A~~~l~~lg~~~~--~-~~~v--------~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~ 194 (500)
T COG1129 126 ARELLARLGLDID--P-DTLV--------GDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQ 194 (500)
T ss_pred HHHHHHHcCCCCC--h-hhhh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC
Confidence 6677777776311 1 3444 7999999999999999999999999999999 9999999999999998754
Q ss_pred ------cCCCcchhhcccCCC
Q 021147 303 ------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ------~~~~~~~~~~~~~~~ 317 (317)
-+|+++-+-.+||||
T Consensus 195 Gv~ii~ISHrl~Ei~~i~Dri 215 (500)
T COG1129 195 GVAIIYISHRLDEVFEIADRI 215 (500)
T ss_pred CCEEEEEcCcHHHHHHhcCEE
Confidence 456677777777774
No 264
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=2.5e-34 Score=261.87 Aligned_cols=179 Identities=18% Similarity=0.215 Sum_probs=137.2
Q ss_pred CceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccC
Q 021147 92 GMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRS 171 (317)
Q Consensus 92 ~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~ 171 (317)
+|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|++ ...
T Consensus 36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~----------------------~~~- 87 (236)
T cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ-----PTSGEVRVAGLV----------------------PWK- 87 (236)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEE----------------------ccc-
Confidence 3999999999999999999999999999999999999 999999999875 211
Q ss_pred ChHHHHHHHHHhhhhccccc-cccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHHcCCCcccCCCCCCEEEEec
Q 021147 172 DSSSLRNRMRCKAHKIGCEP-SVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH 249 (317)
Q Consensus 172 ~~~~~r~~~~~~~~~ig~v~-Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~h 249 (317)
....+++. ++|++ |.+.+ ...+|+.+|+.+...... ......+++.++++.++++... ...+
T Consensus 88 ~~~~~~~~-------i~~~~~~~~~~-~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~---~~~~----- 151 (236)
T cd03267 88 RRKKFLRR-------IGVVFGQKTQL-WWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELL---DTPV----- 151 (236)
T ss_pred cchhhccc-------EEEEcCCcccc-CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh---cCCh-----
Confidence 11223333 99997 44443 345799999976543211 2222344566778888874221 2333
Q ss_pred cchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------cCCCcchhhcccCCC
Q 021147 250 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 250 g~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+. ..|+...+...+|++
T Consensus 152 ---~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i 224 (236)
T cd03267 152 ---RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRV 224 (236)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEE
Confidence 6899999999999999999999999999999 9999999999999988542 456666666767654
No 265
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=5.7e-34 Score=261.20 Aligned_cols=198 Identities=14% Similarity=0.076 Sum_probs=146.3
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhc--ccCCCCCCcCcEEEECcccC
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl--~~p~~~~p~~G~I~i~g~~~ 146 (317)
..+|+++||++.|++. .+ |++|||+|++||++||+|+||||||||+++|+|+ ++ |++|+|+++|.+
T Consensus 5 ~~~l~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~-----~~~G~i~~~g~~- 72 (252)
T CHL00131 5 KPILEIKNLHASVNEN-EI-----LKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK-----ILEGDILFKGES- 72 (252)
T ss_pred CceEEEEeEEEEeCCE-Ee-----eecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCc-----CCCceEEECCEE-
Confidence 4579999999999754 34 9999999999999999999999999999999998 56 899999999976
Q ss_pred ceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc-C---C-C--C-h
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM-E---G-D--S-D 218 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~-~---~-~--~-~ 218 (317)
+...+....++ ..++|++|++.++. ..++.+|+.+.... . . . . .
T Consensus 73 ---------------------~~~~~~~~~~~------~~~~~~~q~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~ 124 (252)
T CHL00131 73 ---------------------ILDLEPEERAH------LGIFLAFQYPIEIP-GVSNADFLRLAYNSKRKFQGLPELDPL 124 (252)
T ss_pred ---------------------cccCChhhhhe------eeEEEEeccccccc-cccHHHHHHHhhhhhhcccccccccHH
Confidence 33333322221 12788999886554 45888888754211 0 0 0 1 1
Q ss_pred HHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchh-cCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHH
Q 021147 219 VEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLL-SLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDML 296 (317)
Q Consensus 219 ~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~-~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l 296 (317)
...+++.++++.++++.... +... . .|||||+||++||||++.+|+++||||||+ ||+.++..+.+.|
T Consensus 125 ~~~~~~~~~l~~~~l~~~~~--~~~~--------~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 194 (252)
T CHL00131 125 EFLEIINEKLKLVGMDPSFL--SRNV--------NEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGI 194 (252)
T ss_pred HHHHHHHHHHHHcCCchhhh--cccc--------ccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 12345567788888741111 1222 3 599999999999999999999999999999 9999999999999
Q ss_pred HHHHHh------cCCCcchhhcc-cCC
Q 021147 297 RYCLEH------ADRNLSCKSCA-RNK 316 (317)
Q Consensus 297 ~~l~~~------~~~~~~~~~~~-~~~ 316 (317)
+++.+. ..|+...+... +|+
T Consensus 195 ~~~~~~g~tii~~tH~~~~~~~~~~d~ 221 (252)
T CHL00131 195 NKLMTSENSIILITHYQRLLDYIKPDY 221 (252)
T ss_pred HHHHhCCCEEEEEecCHHHHHhhhCCE
Confidence 987642 34555555443 565
No 266
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.8e-34 Score=286.78 Aligned_cols=199 Identities=15% Similarity=0.159 Sum_probs=153.7
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||+++|++. .+ |++|||+|++|++++|+||||||||||+|+|+|+++|+ |++|+|.++|++
T Consensus 1 ~l~i~~l~~~~~~~-~i-----l~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~---~~~G~i~~~g~~----- 66 (500)
T TIGR02633 1 LLEMKGIVKTFGGV-KA-----LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG---TWDGEIYWSGSP----- 66 (500)
T ss_pred CEEEEeEEEEeCCe-Ee-----ecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCCeEEEECCEE-----
Confidence 48999999999754 34 99999999999999999999999999999999999821 279999999986
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-----CCChHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-----GDSDVEKQYNQ 225 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-----~~~~~~~~~~~ 225 (317)
+...+....+ .+.+||+||++.++. .+|+.+|+.+..... .......+++.
T Consensus 67 -----------------~~~~~~~~~~------~~~i~~v~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~ 122 (500)
T TIGR02633 67 -----------------LKASNIRDTE------RAGIVIIHQELTLVP-ELSVAENIFLGNEITLPGGRMAYNAMYLRAK 122 (500)
T ss_pred -----------------CCCCCHHHHH------hCCEEEEeeccccCC-CCcHHHHHHhhccccccccccCHHHHHHHHH
Confidence 3333322211 123999999986544 589999998754221 11122334567
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++++.+++.... ....+ .+|||||+||++||||++.+|+++||||||+ ||+.+...+.+.|+++.+.
T Consensus 123 ~~l~~~~l~~~~--~~~~~--------~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~ 192 (500)
T TIGR02633 123 NLLRELQLDADN--VTRPV--------GDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGV 192 (500)
T ss_pred HHHHHcCCCCCc--ccCch--------hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 788888873211 12334 6899999999999999999999999999999 9999999999999998543
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 193 tviiitHd~~~~~~~~d~i 211 (500)
T TIGR02633 193 ACVYISHKLNEVKAVCDTI 211 (500)
T ss_pred EEEEEeCcHHHHHHhCCEE
Confidence 467777777777764
No 267
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-34 Score=248.13 Aligned_cols=156 Identities=23% Similarity=0.324 Sum_probs=129.7
Q ss_pred eEEEeEEEEcCCCC-ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 72 TDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 72 I~~~nls~~y~~~~-~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
|+++|++++|++.. .+ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~~~~~-----l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~-----~~~G~i~~~g~~----- 65 (171)
T cd03228 1 IEFKNVSFSYPGRPKPV-----LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD-----PTSGEILIDGVD----- 65 (171)
T ss_pred CEEEEEEEEcCCCCccc-----ccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCCEEEECCEE-----
Confidence 57899999997641 33 999999999999999999999999999999999999 999999999975
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+...+...+++. ++|++|++.++. .|+.||+
T Consensus 66 -----------------~~~~~~~~~~~~-------i~~~~~~~~~~~--~t~~e~l----------------------- 96 (171)
T cd03228 66 -----------------LRDLDLESLRKN-------IAYVPQDPFLFS--GTIRENI----------------------- 96 (171)
T ss_pred -----------------hhhcCHHHHHhh-------EEEEcCCchhcc--chHHHHh-----------------------
Confidence 434444444444 999999986554 3777665
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cC
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----AD 304 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~ 304 (317)
||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++.+. ..
T Consensus 97 ------------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~s 152 (171)
T cd03228 97 ------------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIA 152 (171)
T ss_pred ------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 89999999999999999999999999999 9999999999999987532 34
Q ss_pred CCcchhhcccCC
Q 021147 305 RNLSCKSCARNK 316 (317)
Q Consensus 305 ~~~~~~~~~~~~ 316 (317)
|+...+.. +|+
T Consensus 153 h~~~~~~~-~d~ 163 (171)
T cd03228 153 HRLSTIRD-ADR 163 (171)
T ss_pred cCHHHHHh-CCE
Confidence 45555544 555
No 268
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-34 Score=250.49 Aligned_cols=195 Identities=17% Similarity=0.278 Sum_probs=167.6
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||+++|++.. + |+++|++|++|.+++||||||||||||+.++++|.+ +++|+|+++|.+
T Consensus 1 MI~i~nv~K~y~~~~-v-----l~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~-----~d~G~i~i~g~~----- 64 (252)
T COG4604 1 MITIENVSKSYGTKV-V-----LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK-----KDSGEITIDGLE----- 64 (252)
T ss_pred CeeehhhhHhhCCEE-e-----eccceeeecCCceeEEECCCCccHHHHHHHHHHhcc-----ccCceEEEeeee-----
Confidence 689999999997653 4 999999999999999999999999999999999999 999999999987
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhh-ccC--CCChHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK-SME--GDSDVEKQYNQIV 227 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~-~~~--~~~~~~~~~~~~~ 227 (317)
+..++.+.+.+. +.++-|+.+ ++..+||+|-+.|+. +|. ...+++...+.++
T Consensus 65 -----------------~~~~~s~~LAk~-------lSILkQ~N~-i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~a 119 (252)
T COG4604 65 -----------------LTSTPSKELAKK-------LSILKQENH-INSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEA 119 (252)
T ss_pred -----------------cccCChHHHHHH-------HHHHHhhch-hhheeEHHHHhhcCCCcccCCCCchHHHHHHHHH
Confidence 778888888887 777777765 555789999999986 332 2346778888899
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++-+.+.. +.+.|- .+||||||||..+|..++.+.+.++||||-+ ||.+....+++.++++...
T Consensus 120 ieyl~L~~--l~dryL---------d~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~Kt 188 (252)
T COG4604 120 IEYLHLED--LSDRYL---------DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKT 188 (252)
T ss_pred HHHhcccc--hHHHhH---------HhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCe
Confidence 99988743 223333 6999999999999999999999999999999 9999999999999998765
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
.=|++.+++|+.|.+
T Consensus 189 iviVlHDINfAS~YsD~I 206 (252)
T COG4604 189 IVVVLHDINFASCYSDHI 206 (252)
T ss_pred EEEEEecccHHHhhhhhe
Confidence 346789999999875
No 269
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-34 Score=292.69 Aligned_cols=215 Identities=13% Similarity=0.178 Sum_probs=157.6
Q ss_pred CCceEEEeEEEEcCCC---CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 69 GSLTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~---~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
+++|+++||+++|+.. ..+ |+||||+|++||++||||+||||||||+|+|+|+++ |++|+|.++|..
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~-----l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~-----p~~G~i~~~g~~ 79 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAA-----VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE-----QAGGLVQCDKML 79 (623)
T ss_pred CceEEEeceEEEecCCCCceeE-----EEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCeEEEECCEE
Confidence 4689999999999632 223 999999999999999999999999999999999999 999999998863
Q ss_pred CceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhcc--CCCChHHHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSM--EGDSDVEKQ 222 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~--~~~~~~~~~ 222 (317)
... +. .....+...+...++.. ....|||++|++. .+...+||.+|+.+.... ........+
T Consensus 80 ~~~----~~--------~~~~~~~~~~~~~~~~~---r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~ 144 (623)
T PRK10261 80 LRR----RS--------RQVIELSEQSAAQMRHV---RGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMV 144 (623)
T ss_pred ecc----cc--------ccccccccCCHHHHHHH---hCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHH
Confidence 100 00 00000111222211110 0124999999873 234457999999875322 112223446
Q ss_pred HHHHHHHHcCCCc-ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCPY-LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 223 ~~~~~a~~~~l~~-~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
++.++++.++++. ....+.+. .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.++++++.
T Consensus 145 ~~~~~l~~~gL~~~~~~~~~~~---------~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~ 215 (623)
T PRK10261 145 EAKRMLDQVRIPEAQTILSRYP---------HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQ 215 (623)
T ss_pred HHHHHHHHCCCCChhhHHhCCC---------ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHH
Confidence 6778899999842 11112333 6999999999999999999999999999999 99999999999999986
Q ss_pred Hh-------cCCCcchhhcccCCC
Q 021147 301 EH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 301 ~~-------~~~~~~~~~~~~~~~ 317 (317)
+. ..|++..+..++|||
T Consensus 216 ~~~g~tvi~itHdl~~~~~~adri 239 (623)
T PRK10261 216 KEMSMGVIFITHDMGVVAEIADRV 239 (623)
T ss_pred HhcCCEEEEEcCCHHHHHHhCCEE
Confidence 43 457788888888875
No 270
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-33 Score=261.93 Aligned_cols=206 Identities=14% Similarity=0.120 Sum_probs=151.5
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++||+++|++. .+ |+|+||+|++||+++|+|+||||||||+++|+|+.+|....|++|+|.++|.+...
T Consensus 14 ~~~l~~~~l~~~~~~~-~v-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~ 87 (265)
T PRK14252 14 QQKSEVNKLNFYYGGY-QA-----LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI 87 (265)
T ss_pred CceEEEEEEEEEECCe-ee-----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccc
Confidence 4579999999999754 34 99999999999999999999999999999999999732101279999999875110
Q ss_pred eeEecccCCCCcccccceee-ccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC--hHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVI-RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS--DVEKQYNQ 225 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~--~~~~~~~~ 225 (317)
. ...+...+++. ++|++|++.++. .|+.+|+.+........ ....+++.
T Consensus 88 -------------------~~~~~~~~~~~~~-------i~~~~q~~~~~~--~tv~eni~~~~~~~~~~~~~~~~~~~~ 139 (265)
T PRK14252 88 -------------------LSPEVDPIEVRMR-------ISMVFQKPNPFP--KSIFENVAYGLRIRGVKRRSILEERVE 139 (265)
T ss_pred -------------------cccccCHHHHhcc-------EEEEccCCcCCc--chHHHHHHhHHHHcCCChHHHHHHHHH
Confidence 0 11122233444 999999988775 39999998753221111 12234566
Q ss_pred HHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 226 IVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 226 ~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
++++.+++.. .... +..+ .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 140 ~~l~~~~l~~~l~~~~-~~~~--------~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~ 210 (265)
T PRK14252 140 NALRNAALWDEVKDRL-GDLA--------FNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNK 210 (265)
T ss_pred HHHHHcCCchhhhHHH-hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC
Confidence 6777776521 1111 1222 6899999999999999999999999999999 9999999999999987532
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+.+.+||+
T Consensus 211 ~tiiivth~~~~~~~~~d~i 230 (265)
T PRK14252 211 VTILIVTHNMQQAARVSDYT 230 (265)
T ss_pred CEEEEEecCHHHHHHhCCEE
Confidence 446666666667764
No 271
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.7e-34 Score=243.91 Aligned_cols=188 Identities=15% Similarity=0.188 Sum_probs=151.0
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
.|+++++++..+.... .+.+|++|+|.|++||.+|||||||||||||+-+++||.. |++|+|++.|++
T Consensus 6 ii~~~~l~ktvg~~~~--~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~-----~ssGeV~l~G~~----- 73 (228)
T COG4181 6 IIEVHHLSKTVGQGEG--ELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD-----PSSGEVRLLGQP----- 73 (228)
T ss_pred eeehhhhhhhhcCCCc--ceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC-----CCCceEEEcCcc-----
Confidence 7999999999865432 2233999999999999999999999999999999999999 999999999997
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC-hHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS-DVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~a~ 229 (317)
+.+++.+.... -..++||+|||...+.+ ++|-.||+++......+. ...+....+.++
T Consensus 74 -----------------L~~ldEd~rA~---~R~~~vGfVFQSF~Lip-~ltAlENV~lPleL~ge~~~~~~~~A~~lL~ 132 (228)
T COG4181 74 -----------------LHKLDEDARAA---LRARHVGFVFQSFHLIP-NLTALENVALPLELRGESSADSRAGAKALLE 132 (228)
T ss_pred -----------------hhhcCHHHHHH---hhccceeEEEEeeeccc-cchhhhhccchhhhcCCccccHHHHHHHHHH
Confidence 55555443221 12345999999987665 799999998765444432 233445667788
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
.+|+.. .-.+|+ .+||||++||++||||++..|++++.||||- ||..|-..+.+++-.+.+.
T Consensus 133 ~vGLg~--Rl~HyP---------~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre 195 (228)
T COG4181 133 AVGLGK--RLTHYP---------AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE 195 (228)
T ss_pred HhCccc--ccccCc---------cccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhh
Confidence 888731 223677 6999999999999999999999999999999 9999999999999877543
No 272
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=6e-34 Score=257.31 Aligned_cols=196 Identities=17% Similarity=0.153 Sum_probs=145.5
Q ss_pred ceEEEeEEEEcCCC---CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 71 LTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 71 ~I~~~nls~~y~~~---~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
.+.++||+++|++. ..+ |+|+||+|++||+++|+||||||||||+|+|+|++++. .|++|+|.++|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~--~~~~G~i~~~g~~-- 73 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARI-----LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGG--GTTSGQILFNGQP-- 73 (226)
T ss_pred cceeecceeeeecCcccccc-----ccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCC--CCCceEEEECCEE--
Confidence 47899999999754 233 99999999999999999999999999999999998621 1579999999975
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC--CC-Ch-HHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME--GD-SD-VEKQY 223 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~--~~-~~-~~~~~ 223 (317)
+. ...+++ .++|++|++.+++ .+|+.+|+.+..... .. .. .....
T Consensus 74 --------------------~~---~~~~~~-------~i~~~~q~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~ 122 (226)
T cd03234 74 --------------------RK---PDQFQK-------CVAYVRQDDILLP-GLTVRETLTYTAILRLPRKSSDAIRKKR 122 (226)
T ss_pred --------------------CC---hHHhcc-------cEEEeCCCCccCc-CCcHHHHHHHHHHhhcccccchHHHHHH
Confidence 21 122333 3999999987654 579999998754221 11 11 11122
Q ss_pred HHH-HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 224 NQI-VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 224 ~~~-~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
..+ .++.+++.... .... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++.+
T Consensus 123 ~~~~~l~~~~l~~~~---~~~~--------~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~ 191 (226)
T cd03234 123 VEDVLLRDLALTRIG---GNLV--------KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR 191 (226)
T ss_pred HHHHHHHhhcchhhh---cccc--------cCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH
Confidence 333 56666653211 2223 6899999999999999999999999999999 999999999999998764
Q ss_pred h------cCCCc-chhhcccCCC
Q 021147 302 H------ADRNL-SCKSCARNKV 317 (317)
Q Consensus 302 ~------~~~~~-~~~~~~~~~~ 317 (317)
. ..|+. ..+.+.+|++
T Consensus 192 ~~~tiii~sh~~~~~~~~~~d~i 214 (226)
T cd03234 192 RNRIVILTIHQPRSDLFRLFDRI 214 (226)
T ss_pred CCCEEEEEecCCCHHHHHhCCEE
Confidence 3 33554 2555666653
No 273
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=7.8e-34 Score=261.22 Aligned_cols=180 Identities=20% Similarity=0.270 Sum_probs=138.1
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++.. .
T Consensus 3 ~~l~~~~l~~~~~~~-~v-----l~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~~~~-~-- 68 (251)
T PRK09544 3 SLVSLENVSVSFGQR-RV-----LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA-----PDEGVIKRNGKL-R-- 68 (251)
T ss_pred cEEEEeceEEEECCc-eE-----EEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCcc-C--
Confidence 479999999999754 34 999999999999999999999999999999999999 999999987642 3
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccc-hhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF-VIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
++|++|++.++.. ..++.+++.+.. .. ..+++.+++
T Consensus 69 -------------------------------------i~~v~q~~~~~~~l~~~~~~~~~~~~---~~---~~~~~~~~l 105 (251)
T PRK09544 69 -------------------------------------IGYVPQKLYLDTTLPLTVNRFLRLRP---GT---KKEDILPAL 105 (251)
T ss_pred -------------------------------------EEEeccccccccccChhHHHHHhccc---cc---cHHHHHHHH
Confidence 5555554433221 134555543211 10 123466778
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++.... .... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 106 ~~~gl~~~~---~~~~--------~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~ti 174 (251)
T PRK09544 106 KRVQAGHLI---DAPM--------QKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAV 174 (251)
T ss_pred HHcCChHHH---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 888874221 2223 6899999999999999999999999999999 9999999999999987653
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|+|
T Consensus 175 iivsH~~~~i~~~~d~i 191 (251)
T PRK09544 175 LMVSHDLHLVMAKTDEV 191 (251)
T ss_pred EEEecCHHHHHHhCCEE
Confidence 466777776777764
No 274
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=267.11 Aligned_cols=202 Identities=18% Similarity=0.218 Sum_probs=152.5
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++||++.|++. .+ |+++||+|++||+++|+|+||||||||+++|+|+++|....|++|+|.++|.+
T Consensus 43 ~~~l~i~nl~~~~~~~-~i-----L~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~--- 113 (305)
T PRK14264 43 DAKLSVEDLDVYYGDD-HA-----LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQD--- 113 (305)
T ss_pred CceEEEEEEEEEeCCe-ee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE---
Confidence 3479999999999754 33 99999999999999999999999999999999998621111589999999976
Q ss_pred eeEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC------------
Q 021147 149 TYFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME------------ 214 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~------------ 214 (317)
+.. .+...+++. ++|++|++.+++ .|+++|+.+.....
T Consensus 114 -------------------i~~~~~~~~~~~~~-------i~~v~q~~~l~~--~tv~enl~~~~~~~~~~~~~~~~~~~ 165 (305)
T PRK14264 114 -------------------IYQDGVNLVELRKR-------VGMVFQSPNPFP--KSIRENISYGPRKHGDINTGLLARLL 165 (305)
T ss_pred -------------------cccccccHHHHhhc-------eEEEccCCcccc--ccHHHHHHhHHhhccccccccccccc
Confidence 221 223334444 999999987765 49999998753210
Q ss_pred -CC-ChHHHHHHHHHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHH
Q 021147 215 -GD-SDVEKQYNQIVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENE 289 (317)
Q Consensus 215 -~~-~~~~~~~~~~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~ 289 (317)
.. .....+++.++++.++++. .... +... .+||+||+||++|||||+.+|+++|||||++ ||+.++
T Consensus 166 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~--------~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~ 236 (305)
T PRK14264 166 GRDDKDAEDELVERSLRQAALWDEVNDRL-DDNA--------LGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIAT 236 (305)
T ss_pred ccCchHHHHHHHHHHHHHcCCchhhhHHh-cCcc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 00 1122345677788877631 1111 1222 6899999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHh-----cCCCcchhhcccCC
Q 021147 290 LIIVDMLRYCLEH-----ADRNLSCKSCARNK 316 (317)
Q Consensus 290 ~~l~~~l~~l~~~-----~~~~~~~~~~~~~~ 316 (317)
..+.+.|+++.+. ..|++..+...+||
T Consensus 237 ~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~ 268 (305)
T PRK14264 237 SKIEDLIEELAEEYTVVVVTHNMQQAARISDQ 268 (305)
T ss_pred HHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCE
Confidence 9999999998542 45666666666776
No 275
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=5.4e-34 Score=249.33 Aligned_cols=160 Identities=18% Similarity=0.332 Sum_probs=128.9
Q ss_pred EEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEe
Q 021147 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 152 (317)
Q Consensus 73 ~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~ 152 (317)
+++||+++|++. .+ |+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 ~~~~l~~~~~~~-~~-----l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~-----~~~G~v~~~g~~------- 62 (180)
T cd03214 1 EVENLSVGYGGR-TV-----LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK-----PSSGEILLDGKD------- 62 (180)
T ss_pred CeeEEEEEECCe-ee-----EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEE-------
Confidence 478999999753 34 999999999999999999999999999999999999 999999999976
Q ss_pred cccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcC
Q 021147 153 QEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFN 232 (317)
Q Consensus 153 Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~ 232 (317)
+..++...+++. ++|++| +++.++
T Consensus 63 ---------------~~~~~~~~~~~~-------i~~~~q----------------------------------~l~~~g 86 (180)
T cd03214 63 ---------------LASLSPKELARK-------IAYVPQ----------------------------------ALELLG 86 (180)
T ss_pred ---------------CCcCCHHHHHHH-------HhHHHH----------------------------------HHHHcC
Confidence 444454444444 888776 444455
Q ss_pred CCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------cC
Q 021147 233 CPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-------AD 304 (317)
Q Consensus 233 l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-------~~ 304 (317)
+.... .... ..||+||+||+++|||++.+|+++||||||+ ||+.+...+.+.++++.+. ..
T Consensus 87 l~~~~---~~~~--------~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~s 155 (180)
T cd03214 87 LAHLA---DRPF--------NELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVL 155 (180)
T ss_pred CHhHh---cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 42111 1222 6899999999999999999999999999999 9999999999999988653 34
Q ss_pred CCcchhhcccCCC
Q 021147 305 RNLSCKSCARNKV 317 (317)
Q Consensus 305 ~~~~~~~~~~~~~ 317 (317)
|+...+.+.+|++
T Consensus 156 h~~~~~~~~~d~~ 168 (180)
T cd03214 156 HDLNLAARYADRV 168 (180)
T ss_pred CCHHHHHHhCCEE
Confidence 6666666666663
No 276
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=7.2e-34 Score=260.70 Aligned_cols=189 Identities=14% Similarity=0.162 Sum_probs=147.1
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
++++||++. . + |+++||+|++|++++|+|+||||||||+++|+|+++ + +|+|.++|++
T Consensus 1 ~~~~~l~~~----~-~-----l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-----~-~G~i~~~g~~------ 58 (248)
T PRK03695 1 MQLNDVAVS----T-R-----LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-----G-SGSIQFAGQP------ 58 (248)
T ss_pred Ccccccchh----c-e-----ecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----C-CeEEEECCEe------
Confidence 357888875 1 3 999999999999999999999999999999999986 6 8999999986
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHc
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF 231 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~ 231 (317)
+...+...+++. ++|+||++.++. .+|+.+|+.+............+++.++++.+
T Consensus 59 ----------------i~~~~~~~~~~~-------i~~v~q~~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~ 114 (248)
T PRK03695 59 ----------------LEAWSAAELARH-------RAYLSQQQTPPF-AMPVFQYLTLHQPDKTRTEAVASALNEVAEAL 114 (248)
T ss_pred ----------------cCcCCHHHHhhh-------eEEecccCccCC-CccHHHHHHhcCccCCCcHHHHHHHHHHHHHc
Confidence 444454445444 999999875443 57999999876422222223345677888888
Q ss_pred CCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceecc-------ccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 232 NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGI-------PPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 232 ~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~-------~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
++.... .... ..||+||+||+++|||++. +|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 115 ~l~~~~---~~~~--------~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~ 183 (248)
T PRK03695 115 GLDDKL---GRSV--------NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQG 183 (248)
T ss_pred CCHhHh---cCCc--------ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCC
Confidence 874211 2233 6899999999999999997 679999999999 9999999999999988642
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|+|
T Consensus 184 ~tvi~~sH~~~~~~~~~d~i 203 (248)
T PRK03695 184 IAVVMSSHDLNHTLRHADRV 203 (248)
T ss_pred CEEEEEecCHHHHHHhCCEE
Confidence 456666677777764
No 277
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.9e-34 Score=255.73 Aligned_cols=191 Identities=18% Similarity=0.209 Sum_probs=164.6
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
++++++|+++|+.... ++||||++++|++++++|+|||||||++|+|.|+++ |++|+|.|+|.+
T Consensus 2 ~L~ie~vtK~Fg~k~a------v~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle-----~~~G~I~~~g~~----- 65 (300)
T COG4152 2 ALEIEGVTKSFGDKKA------VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE-----PTEGEITWNGGP----- 65 (300)
T ss_pred ceEEecchhccCceee------ecceeeeecCCeEEEeecCCCCCccchHHHHhccCC-----ccCceEEEcCcc-----
Confidence 5899999999987653 999999999999999999999999999999999999 999999999986
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc-CCCChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM-EGDSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~-~~~~~~~~~~~~~~a~ 229 (317)
++ ...+.+ |||+|.+..++. .+||.|.+.|+... .....+.++++.+.++
T Consensus 66 -----------------~~----~~~~~r-------IGyLPEERGLy~-k~tv~dql~yla~LkGm~~~e~~~~~~~wLe 116 (300)
T COG4152 66 -----------------LS----QEIKNR-------IGYLPEERGLYP-KMTVEDQLKYLAELKGMPKAEIQKKLQAWLE 116 (300)
T ss_pred -----------------hh----hhhhhh-------cccChhhhccCc-cCcHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 21 123334 999999987655 69999999886544 3445677888889999
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
++.+.... ...+ .+||-|.+|++.+--+++++|.++|||||+| |||.+.+.+.+.+.++...
T Consensus 117 r~~i~~~~---~~kI--------k~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIif 185 (300)
T COG4152 117 RLEIVGKK---TKKI--------KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIF 185 (300)
T ss_pred hccccccc---cchH--------HHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEE
Confidence 99874222 3455 7999999999999999999999999999999 9999999999999998754
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
++|....++++||++
T Consensus 186 SsH~Me~vEeLCD~l 200 (300)
T COG4152 186 SSHRMEHVEELCDRL 200 (300)
T ss_pred ecchHHHHHHHhhhh
Confidence 889999999999985
No 278
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-33 Score=258.30 Aligned_cols=201 Identities=18% Similarity=0.216 Sum_probs=149.8
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
-+|+++||++.|++. .+ |+|+||+|++||+++|+|+||||||||+++|+|+..+....|++|+|+++|++
T Consensus 2 ~~l~~~~v~~~~~~~-~~-----l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~---- 71 (250)
T PRK14266 2 YRIEVENLNTYFDDA-HI-----LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVD---- 71 (250)
T ss_pred cEEEEEeEEEEeCCe-EE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEE----
Confidence 358999999999753 34 99999999999999999999999999999999997411001389999999976
Q ss_pred eEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-C-CChHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-G-DSDVEKQYNQ 225 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~-~~~~~~~~~~ 225 (317)
+.. .+...+++. ++|+||++.++. .|+.+|+.+..... . ......+++.
T Consensus 72 ------------------i~~~~~~~~~~~~~-------i~~~~q~~~~~~--~t~~~nl~~~~~~~~~~~~~~~~~~~~ 124 (250)
T PRK14266 72 ------------------IYDPAVDVVELRKK-------VGMVFQKPNPFP--KSIFDNVAYGLRIHGEDDEDFIEERVE 124 (250)
T ss_pred ------------------cccccccHHHHhhh-------eEEEecCCccCc--chHHHHHHhHHhhcCCCCHHHHHHHHH
Confidence 322 122334444 999999988775 39999998653211 1 1122345566
Q ss_pred HHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 226 IVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 226 ~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
++++.+++.. .... +... ..||+||+||+++|||++.+|+++|||||++ ||+.++..+.+.|+++.+.
T Consensus 125 ~~l~~~~l~~~l~~~~-~~~~--------~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~ 195 (250)
T PRK14266 125 ESLKAAALWDEVKDKL-DKSA--------LGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKED 195 (250)
T ss_pred HHHHHcCCchhHHHHH-hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcC
Confidence 7788877631 1111 2222 6899999999999999999999999999999 9999999999999987531
Q ss_pred -----cCCCcchhhcccCC
Q 021147 303 -----ADRNLSCKSCARNK 316 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~ 316 (317)
..|+...+.+.+|+
T Consensus 196 ~tiii~sh~~~~~~~~~~~ 214 (250)
T PRK14266 196 YTIVIVTHNMQQATRVSKY 214 (250)
T ss_pred CeEEEEECCHHHHHhhcCE
Confidence 34555556665554
No 279
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.7e-33 Score=249.05 Aligned_cols=169 Identities=13% Similarity=0.144 Sum_probs=134.9
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++|++++|++. . +.++||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|.+
T Consensus 1 ~l~~~~l~~~~~~~-~------l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~----- 63 (195)
T PRK13541 1 MLSLHQLQFNIEQK-N------LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ-----PSSGNIYYKNCN----- 63 (195)
T ss_pred CeEEEEeeEEECCc-E------EEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCcc-----
Confidence 58999999999653 3 445999999999999999999999999999999999 999999999975
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+.... ++. ++|++|++. +....|+.+|+.+...... ..+++.++++.
T Consensus 64 -----------------i~~~~----~~~-------~~~~~~~~~-~~~~~tv~~~l~~~~~~~~----~~~~~~~~l~~ 110 (195)
T PRK13541 64 -----------------INNIA----KPY-------CTYIGHNLG-LKLEMTVFENLKFWSEIYN----SAETLYAAIHY 110 (195)
T ss_pred -----------------cChhh----hhh-------EEeccCCcC-CCccCCHHHHHHHHHHhcc----cHHHHHHHHHH
Confidence 22111 122 899998874 3346799999987543211 12346677788
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+++.... +... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.+++..
T Consensus 111 ~~l~~~~---~~~~--------~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~ 170 (195)
T PRK13541 111 FKLHDLL---DEKC--------YSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKA 170 (195)
T ss_pred cCCHhhh---ccCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 8864221 2222 7899999999999999999999999999999 99999999999997653
No 280
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.1e-33 Score=254.03 Aligned_cols=178 Identities=17% Similarity=0.187 Sum_probs=134.0
Q ss_pred EEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEe
Q 021147 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 152 (317)
Q Consensus 73 ~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~ 152 (317)
.+.|+.|.|++...+ ++++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 2 ~~~~~~~~~~~~~~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~------- 64 (218)
T cd03290 2 QVTNGYFSWGSGLAT-----LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ-----TLEGKVHWSNKN------- 64 (218)
T ss_pred eeeeeEEecCCCCcc-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCCeEEECCcc-------
Confidence 578999999755444 999999999999999999999999999999999999 999999999975
Q ss_pred cccCCCCcccccceeeccCCh----HHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 153 QEYTIPRGVRHGELVIRRSDS----SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 153 Q~~~l~~~~~~~~~~~~~~~~----~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
+...+. ...++ .++|++|++.++. .|+.+|+.+.... . .++..+++
T Consensus 65 ---------------~~~~~~~~~~~~~~~-------~i~~~~q~~~~~~--~t~~~nl~~~~~~---~---~~~~~~~~ 114 (218)
T cd03290 65 ---------------ESEPSFEATRSRNRY-------SVAYAAQKPWLLN--ATVEENITFGSPF---N---KQRYKAVT 114 (218)
T ss_pred ---------------cccccccccchhhcc-------eEEEEcCCCcccc--ccHHHHHhhcCcC---C---HHHHHHHH
Confidence 222111 11222 3999999987663 5999999865321 1 12234556
Q ss_pred HHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHH--HHHHH
Q 021147 229 TTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVD--MLRYC 299 (317)
Q Consensus 229 ~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~--~l~~l 299 (317)
+.+++. ...++.++.+.+.... ..||+||+||++||||++.+|+++||||||+ ||+.++..+.+ +++.+
T Consensus 115 ~~~~l~~~~~~~~~~~~~~~~~~~--~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~ 188 (218)
T cd03290 115 DACSLQPDIDLLPFGDQTEIGERG--INLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFL 188 (218)
T ss_pred HHhCcHHHHHhCcCccccCcccCC--CcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHH
Confidence 666652 1112223333222222 6899999999999999999999999999999 99999999988 55554
No 281
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.3e-33 Score=313.30 Aligned_cols=226 Identities=15% Similarity=0.142 Sum_probs=180.9
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc-----C----CCCceEEEeEEEEcCCC-CccccccCceeeee
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT-----R----IGSLTDAKNKILSYTPG-AWIENVGGMTLSDY 98 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl 98 (317)
++..|+......+..+.+++.+.+|+.+++..++.... . ....|+++|++|.|++. ..+ |+|+||
T Consensus 585 ~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----l~~isl 659 (1522)
T TIGR00957 585 ILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARDLPPT-----LNGITF 659 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCCCCce-----eeeeEE
Confidence 45677888888999999999999999999975433211 0 11379999999999753 334 999999
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHH
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRN 178 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~ 178 (317)
+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 660 ~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g~---------------------------------- 700 (1522)
T TIGR00957 660 SIPEGALVAVVGQVGCGKSSLLSALLAEMD-----KVEGHVHMKGS---------------------------------- 700 (1522)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCc-----cCCcEEEECCE----------------------------------
Confidence 999999999999999999999999999999 99999997763
Q ss_pred HHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCc
Q 021147 179 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLT 256 (317)
Q Consensus 179 ~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LS 256 (317)
|+|++|++.+++ .||+||+.++..+. .++..++++.+++. ...+++|..+.++++| .+||
T Consensus 701 --------i~yv~Q~~~l~~--~Ti~eNI~~g~~~~------~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g--~~LS 762 (1522)
T TIGR00957 701 --------VAYVPQQAWIQN--DSLRENILFGKALN------EKYYQQVLEACALLPDLEILPSGDRTEIGEKG--VNLS 762 (1522)
T ss_pred --------EEEEcCCccccC--CcHHHHhhcCCccC------HHHHHHHHHHhCCHHHHHhcCCCCCceecCCC--CCCC
Confidence 899999998775 49999999875421 12344555555552 3346789999999999 8999
Q ss_pred HHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH---HH-----hcCCCcchhhcccCCC
Q 021147 257 DRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC---LE-----HADRNLSCKSCARNKV 317 (317)
Q Consensus 257 gG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l---~~-----~~~~~~~~~~~~~~~~ 317 (317)
||||||++||||++.+|+++|||||++ ||+.+++.+.+.+.+. .+ ...|+++.+.. +|+|
T Consensus 763 GGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~i 831 (1522)
T TIGR00957 763 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVI 831 (1522)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEE
Confidence 999999999999999999999999999 9999999999988643 11 13455655554 5653
No 282
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-34 Score=284.29 Aligned_cols=192 Identities=15% Similarity=0.165 Sum_probs=149.7
Q ss_pred EEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEec
Q 021147 74 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQ 153 (317)
Q Consensus 74 ~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q 153 (317)
++||+++|++. .+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 ~~nl~~~~~~~-~i-----l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~-------- 61 (491)
T PRK10982 1 MSNISKSFPGV-KA-----LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ-----KDSGSILFQGKE-------- 61 (491)
T ss_pred CCceEEEeCCE-Ee-----eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCceEEEECCEE--------
Confidence 47899999754 34 999999999999999999999999999999999999 999999999986
Q ss_pred ccCCCCcccccceeeccCChH-HHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-cCC---CChHHHHHHHHHH
Q 021147 154 EYTIPRGVRHGELVIRRSDSS-SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-MEG---DSDVEKQYNQIVA 228 (317)
Q Consensus 154 ~~~l~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~~~---~~~~~~~~~~~~a 228 (317)
+...+.. .+++ .++|++|++.++ ..+||++|+.+... ... ......+++.+++
T Consensus 62 --------------~~~~~~~~~~~~-------~i~~v~q~~~~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 119 (491)
T PRK10982 62 --------------IDFKSSKEALEN-------GISMVHQELNLV-LQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIF 119 (491)
T ss_pred --------------CCCCCHHHHHhC-------CEEEEecccccc-cCCCHHHHhhcccccccccccCHHHHHHHHHHHH
Confidence 3222222 2222 399999998644 35799999986532 111 1122234567778
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++.... .... .+||||||||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 120 ~~~~l~~~~---~~~~--------~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi 188 (491)
T PRK10982 120 DELDIDIDP---RAKV--------ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIV 188 (491)
T ss_pred HHcCCCCCc---cCch--------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 888864211 2233 7999999999999999999999999999999 9999999999999998542
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 189 i~tH~~~~~~~~~d~i 204 (491)
T PRK10982 189 YISHKMEEIFQLCDEI 204 (491)
T ss_pred EEecCHHHHHHhCCEE
Confidence 467777777777764
No 283
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-34 Score=284.75 Aligned_cols=195 Identities=14% Similarity=0.166 Sum_probs=150.4
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++|+++.|+ . + |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 264 ~~l~~~~l~~~~~--~-~-----l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~g~~---- 326 (510)
T PRK09700 264 TVFEVRNVTSRDR--K-K-----VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK-----RAGGEIRLNGKD---- 326 (510)
T ss_pred cEEEEeCccccCC--C-c-----ccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCCCeEEECCEE----
Confidence 4799999999773 2 3 999999999999999999999999999999999999 999999999975
Q ss_pred eEecccCCCCcccccceeeccCCh-HHHHHHHHHhhhhcccccccc--ccccchhhHHHHHHhhhcc-----C---C--C
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDS-SSLRNRMRCKAHKIGCEPSVI--RKVNFVIFVVDGLAVLKSM-----E---G--D 216 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~ig~v~Q~~--~~~~~~~tv~eni~~~~~~-----~---~--~ 216 (317)
+...+. ..++ +.+||+||++ ..+...+|+.+|+.+.... . . .
T Consensus 327 ------------------~~~~~~~~~~~-------~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 381 (510)
T PRK09700 327 ------------------ISPRSPLDAVK-------KGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFH 381 (510)
T ss_pred ------------------CCCCCHHHHHH-------CCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccC
Confidence 322222 1222 2399999984 2234468999999864321 0 0 1
Q ss_pred ChHHHHHHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHH
Q 021147 217 SDVEKQYNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVD 294 (317)
Q Consensus 217 ~~~~~~~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~ 294 (317)
.....+++.++++.+++. ... +..+ .+||||||||++||||++.+|+++||||||+ ||+.++..+.+
T Consensus 382 ~~~~~~~~~~~l~~~~l~~~~~---~~~~--------~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~ 450 (510)
T PRK09700 382 EVDEQRTAENQRELLALKCHSV---NQNI--------TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYK 450 (510)
T ss_pred hHHHHHHHHHHHHhcCCCCCCc---cCcc--------ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHH
Confidence 112234466788888873 221 3444 7999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHh------cCCCcchhhcccCCC
Q 021147 295 MLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 295 ~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
+|+++.+. ..|++..+...+|||
T Consensus 451 ~l~~l~~~g~tvi~vsHd~~~~~~~~d~i 479 (510)
T PRK09700 451 VMRQLADDGKVILMVSSELPEIITVCDRI 479 (510)
T ss_pred HHHHHHHCCCEEEEEcCCHHHHHhhCCEE
Confidence 99988643 556667777777764
No 284
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.2e-33 Score=274.06 Aligned_cols=196 Identities=15% Similarity=0.175 Sum_probs=161.1
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
..+++++++|.|++- .+ +++|||+|++||++||+|+||||||||+++|+|+|+ |++|+|+++|++
T Consensus 3 ~~l~~~~itK~f~~~-~A-----nd~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~-----P~~GeI~v~G~~---- 67 (501)
T COG3845 3 PALEMRGITKRFPGV-VA-----NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ-----PDSGEIRVDGKE---- 67 (501)
T ss_pred ceEEEeccEEEcCCE-Ee-----cCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc-----CCcceEEECCEE----
Confidence 468999999999843 22 999999999999999999999999999999999999 999999999997
Q ss_pred eEecccCCCCcccccceeeccCChH-HHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC----CCChHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSS-SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME----GDSDVEKQYN 224 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~----~~~~~~~~~~ 224 (317)
++-.++. ..+. .||+|+|.+.+++ ++||.||+.++.... .......+++
T Consensus 68 ------------------v~~~sP~dA~~~-------GIGMVhQHF~Lv~-~lTV~ENiiLg~e~~~~~~~~~~~~~~~i 121 (501)
T COG3845 68 ------------------VRIKSPRDAIRL-------GIGMVHQHFMLVP-TLTVAENIILGLEPSKGGLIDRRQARARI 121 (501)
T ss_pred ------------------eccCCHHHHHHc-------CCcEEeecccccc-ccchhhhhhhcCccccccccCHHHHHHHH
Confidence 3223333 3333 3999999997665 799999999876432 1334567788
Q ss_pred HHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 225 QIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 225 ~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
.++.+..|++... ...+ ..||=|++||+.|-++|+++|++|||||||+ |-|...+.+++.++++.+.
T Consensus 122 ~~l~~~yGl~vdp---~~~V--------~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G 190 (501)
T COG3845 122 KELSERYGLPVDP---DAKV--------ADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEG 190 (501)
T ss_pred HHHHHHhCCCCCc---ccee--------ecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 8889999986432 4455 7999999999999999999999999999999 9999999999999998654
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
-.|.|.-+..++|||
T Consensus 191 ~tIi~ITHKL~Ev~~iaDrv 210 (501)
T COG3845 191 KTIIFITHKLKEVMAIADRV 210 (501)
T ss_pred CEEEEEeccHHHHHHhhCee
Confidence 345566666677764
No 285
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-34 Score=284.48 Aligned_cols=199 Identities=13% Similarity=0.151 Sum_probs=153.5
Q ss_pred CCceEEEeEEEEcCC--CCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCC-cCcEEEECccc
Q 021147 69 GSLTDAKNKILSYTP--GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYNSSV 145 (317)
Q Consensus 69 ~~~I~~~nls~~y~~--~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p-~~G~I~i~g~~ 145 (317)
.++|+++||++.|+. +..+ |+|+||+|++||++||+|+||||||||+|+|+|+++ | ++|+|.++|++
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~v-----l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----~~~~G~i~~~g~~ 326 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIKR-----VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP-----GRWEGEIFIDGKP 326 (506)
T ss_pred CceEEEecCcccccccccccc-----ccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC-----CCCCcEEEECCEE
Confidence 357999999999952 2233 999999999999999999999999999999999997 5 89999999976
Q ss_pred CceeeEecccCCCCcccccceeeccCCh-HHHHHHHHHhhhhccccccccc--cccchhhHHHHHHhhhc--cCC----C
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVIRRSDS-SSLRNRMRCKAHKIGCEPSVIR--KVNFVIFVVDGLAVLKS--MEG----D 216 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~ig~v~Q~~~--~~~~~~tv~eni~~~~~--~~~----~ 216 (317)
+..... ..++ ..++|++|++. .+...+|+.+|+.+... +.. .
T Consensus 327 ----------------------~~~~~~~~~~~-------~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 377 (506)
T PRK13549 327 ----------------------VKIRNPQQAIA-------QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRID 377 (506)
T ss_pred ----------------------CCCCCHHHHHH-------CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccC
Confidence 322221 1122 23999999863 23446799999986421 111 1
Q ss_pred ChHHHHHHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHH
Q 021147 217 SDVEKQYNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVD 294 (317)
Q Consensus 217 ~~~~~~~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~ 294 (317)
.....+++.++++.+++. ... +... .+||||||||++||||++.+|+++||||||+ ||+.+++.+.+
T Consensus 378 ~~~~~~~~~~~l~~~~l~~~~~---~~~~--------~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~ 446 (506)
T PRK13549 378 DAAELKTILESIQRLKVKTASP---ELAI--------ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYK 446 (506)
T ss_pred hHHHHHHHHHHHHhcCccCCCc---cccc--------ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHH
Confidence 122345577788888873 121 3344 7999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHh------cCCCcchhhcccCCC
Q 021147 295 MLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 295 ~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
.|+++.+. ..|++..+..+||||
T Consensus 447 ~l~~l~~~g~tvi~~sHd~~~~~~~~d~v 475 (506)
T PRK13549 447 LINQLVQQGVAIIVISSELPEVLGLSDRV 475 (506)
T ss_pred HHHHHHHCCCEEEEECCCHHHHHHhCCEE
Confidence 99998653 567777777778774
No 286
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-33 Score=252.05 Aligned_cols=161 Identities=17% Similarity=0.147 Sum_probs=129.1
Q ss_pred ceEEEeEEEEcCCC---CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 71 LTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 71 ~I~~~nls~~y~~~---~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
.+.++||+|.|+.+ ..+ |+++||+|++||+++|+||||||||||+++|+|+++|.. |++|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~i-----l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~--~~~G~i~i~g~~-- 73 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPI-----LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNV--SVEGDIHYNGIP-- 73 (202)
T ss_pred eEEEEccEEEeccCCCCcee-----eeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCC--CcceEEEECCEE--
Confidence 57899999999643 223 999999999999999999999999999999999997321 579999999976
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 227 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~ 227 (317)
+.... ...++ .++|++|++.+++ .+||++|+.+.....
T Consensus 74 --------------------~~~~~-~~~~~-------~i~~~~q~~~~~~-~~tv~~~l~~~~~~~------------- 111 (202)
T cd03233 74 --------------------YKEFA-EKYPG-------EIIYVSEEDVHFP-TLTVRETLDFALRCK------------- 111 (202)
T ss_pred --------------------Cccch-hhhcc-------eEEEEecccccCC-CCcHHHHHhhhhhhc-------------
Confidence 22221 12223 3999999876443 479999987542100
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
. +... ..||+||+||+++|||++.+|+++||||||+ ||+.+++.+.+.++++.+.
T Consensus 112 -----~-------~~~~--------~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~ 167 (202)
T cd03233 112 -----G-------NEFV--------RGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADV 167 (202)
T ss_pred -----c-------ccch--------hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh
Confidence 1 1222 6899999999999999999999999999999 9999999999999998653
No 287
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.9e-33 Score=255.78 Aligned_cols=197 Identities=14% Similarity=0.089 Sum_probs=140.7
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcc--cCCCCCCcCcEEEECcccCce
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~--~p~~~~p~~G~I~i~g~~~~~ 148 (317)
||+++||++.|++. .+ |+++||+|++|++++|+|+||||||||+++|+|++ + |++|+|.++|.+
T Consensus 1 ~i~~~nl~~~~~~~-~~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-----~~~G~i~~~g~~--- 66 (248)
T PRK09580 1 MLSIKDLHVSVEDK-AI-----LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE-----VTGGTVEFKGKD--- 66 (248)
T ss_pred CeEEEEEEEEeCCe-ee-----eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCC-----CCceEEEECCCc---
Confidence 58999999999754 34 99999999999999999999999999999999994 6 899999999976
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhh----ccCCC---C-hHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK----SMEGD---S-DVE 220 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~----~~~~~---~-~~~ 220 (317)
+...+....++ ..++|++|++.++. .++...++.+.. ..... . ...
T Consensus 67 -------------------~~~~~~~~~~~------~~i~~~~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (248)
T PRK09580 67 -------------------LLELSPEDRAG------EGIFMAFQYPVEIP-GVSNQFFLQTALNAVRSYRGQEPLDRFDF 120 (248)
T ss_pred -------------------cccCCHHHHhh------cceEEEecCchhcc-chhHHHHHHHhhhhhhcccccccchHHHH
Confidence 33344332221 13899999876443 234444432211 00010 1 112
Q ss_pred HHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 221 KQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 221 ~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
.+.+.++++.++++.. .. .... . ..||+||+||++||||++.+|+++||||||+ ||+.++..+.+.++++
T Consensus 121 ~~~~~~~l~~~~l~~~-~~-~~~~-----~--~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l 191 (248)
T PRK09580 121 QDLMEEKIALLKMPED-LL-TRSV-----N--VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSL 191 (248)
T ss_pred HHHHHHHHHHcCCChh-hc-ccCC-----C--CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 3445667777776411 11 1111 0 2799999999999999999999999999999 9999999999999887
Q ss_pred HHh------cCCCcchhhcc-cCC
Q 021147 300 LEH------ADRNLSCKSCA-RNK 316 (317)
Q Consensus 300 ~~~------~~~~~~~~~~~-~~~ 316 (317)
.+. ..|+...+... +|+
T Consensus 192 ~~~~~tiii~sH~~~~~~~~~~d~ 215 (248)
T PRK09580 192 RDGKRSFIIVTHYQRILDYIKPDY 215 (248)
T ss_pred HhCCCEEEEEeCCHHHHHhhhCCE
Confidence 542 34555555554 554
No 288
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.1e-33 Score=282.77 Aligned_cols=203 Identities=17% Similarity=0.183 Sum_probs=153.1
Q ss_pred CCceEEEeEEEEcCC---C-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEEC-c
Q 021147 69 GSLTDAKNKILSYTP---G-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN-S 143 (317)
Q Consensus 69 ~~~I~~~nls~~y~~---~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~-g 143 (317)
.++|+++||+++|++ + ..+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++ |
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~i-----l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~g 346 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKA-----VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE-----PTSGEVNVRVG 346 (520)
T ss_pred CceEEEeccEEEeccCCCCCceE-----EeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEEecC
Confidence 458999999999953 1 234 999999999999999999999999999999999999 999999996 5
Q ss_pred ccCceeeEecccCCCCcccccceeeccCCh---HHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHH
Q 021147 144 SVGDGTYFLQEYTIPRGVRHGELVIRRSDS---SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 220 (317)
Q Consensus 144 ~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~---~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~ 220 (317)
.+.. .+...+. ..++++ +||+||++.+++ .+|+.+|+.+...........
T Consensus 347 ~~~~-------------------~~~~~~~~~~~~~~~~-------i~~v~q~~~l~~-~~tv~e~l~~~~~~~~~~~~~ 399 (520)
T TIGR03269 347 DEWV-------------------DMTKPGPDGRGRAKRY-------IGILHQEYDLYP-HRTVLDNLTEAIGLELPDELA 399 (520)
T ss_pred Cccc-------------------cccccchhhHHHHhhh-------EEEEccCcccCC-CCcHHHHHHHHHHcCCCHHHH
Confidence 3200 0111111 122333 999999986554 589999998642211111223
Q ss_pred HHHHHHHHHHcCCCcc---cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHH
Q 021147 221 KQYNQIVATTFNCPYL---SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDML 296 (317)
Q Consensus 221 ~~~~~~~a~~~~l~~~---~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l 296 (317)
.+++.++++.+++... .+. +..+ .+|||||+||++||||++.+|+++||||||+ ||+.++..+.+.|
T Consensus 400 ~~~~~~~l~~~~l~~~~~~~~~-~~~~--------~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l 470 (520)
T TIGR03269 400 RMKAVITLKMVGFDEEKAEEIL-DKYP--------DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSI 470 (520)
T ss_pred HHHHHHHHHhCCCCCccchhhh-hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 3456778888887421 011 2333 7999999999999999999999999999999 9999999999999
Q ss_pred HHHHHh-------cCCCcchhhcccCCC
Q 021147 297 RYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 297 ~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
+++.+. ..|++..+...+|||
T Consensus 471 ~~l~~~~g~tvi~vsHd~~~~~~~~d~i 498 (520)
T TIGR03269 471 LKAREEMEQTFIIVSHDMDFVLDVCDRA 498 (520)
T ss_pred HHHHHHcCcEEEEEeCCHHHHHHhCCEE
Confidence 987643 567777777777764
No 289
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.8e-33 Score=290.45 Aligned_cols=232 Identities=16% Similarity=0.075 Sum_probs=176.7
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHccccccc----------------------------c---CCCCceEEEeE
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLR----------------------------T---RIGSLTDAKNK 77 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~---~~~~~I~~~nl 77 (317)
.+..+.......+..+.+...+..|+.++++..++.. . ...++|+++||
T Consensus 378 ~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv 457 (659)
T TIGR00954 378 KAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENI 457 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEee
Confidence 3467777888889999999999999999986422110 0 12347999999
Q ss_pred EEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCC
Q 021147 78 ILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTI 157 (317)
Q Consensus 78 s~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l 157 (317)
+|.|+++..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+++.
T Consensus 458 ~~~~~~~~~i-----l~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~-----~~~G~i~~~~~------------- 514 (659)
T TIGR00954 458 PLVTPNGDVL-----IESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP-----VYGGRLTKPAK------------- 514 (659)
T ss_pred EEECCCCCee-----eecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEeecCC-------------
Confidence 9999754444 999999999999999999999999999999999999 99999985432
Q ss_pred CCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC--CChHHHHHHHHHHHHcCCCc
Q 021147 158 PRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG--DSDVEKQYNQIVATTFNCPY 235 (317)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~--~~~~~~~~~~~~a~~~~l~~ 235 (317)
+. ++|+||++.+++. |++||+.++..... ......+++.++++.++++.
T Consensus 515 --------------------~~-------i~~v~Q~~~l~~~--tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~ 565 (659)
T TIGR00954 515 --------------------GK-------LFYVPQRPYMTLG--TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTH 565 (659)
T ss_pred --------------------Cc-------EEEECCCCCCCCc--CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHH
Confidence 12 9999999987765 99999987532110 01112345778899999842
Q ss_pred -ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH---hcCCCcchh
Q 021147 236 -LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE---HADRNLSCK 310 (317)
Q Consensus 236 -~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~---~~~~~~~~~ 310 (317)
...+.|+++... .+ ..||||||||+++|||++++|+++||||||+ ||+.+++.+.+.+++.-. ...|+++.+
T Consensus 566 ~~~~~~g~~~~~~-~~--~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~ 642 (659)
T TIGR00954 566 ILEREGGWSAVQD-WM--DVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLW 642 (659)
T ss_pred HHhhcCCcccccc-cc--cCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHH
Confidence 223556777543 34 6899999999999999999999999999999 999999999998877410 134555544
Q ss_pred hcccCC
Q 021147 311 SCARNK 316 (317)
Q Consensus 311 ~~~~~~ 316 (317)
+.+|+
T Consensus 643 -~~~d~ 647 (659)
T TIGR00954 643 -KYHEY 647 (659)
T ss_pred -HhCCE
Confidence 34555
No 290
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.4e-33 Score=283.99 Aligned_cols=219 Identities=12% Similarity=0.088 Sum_probs=156.5
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcc--cCCCCCCcCcEEEECccc-Cce
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYNSSV-GDG 148 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~--~p~~~~p~~G~I~i~g~~-~~~ 148 (317)
|+++||+++|++. .+ |+++||+|.+|++++|+||||||||||+|+|+|++ + |++|+|.++|.. -.+
T Consensus 1 l~~~~l~~~~~~~-~~-----l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~-----p~~G~i~~~~~~~~~~ 69 (520)
T TIGR03269 1 IEVKNLTKKFDGK-EV-----LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE-----PTSGRIIYHVALCEKC 69 (520)
T ss_pred CEEEEEEEEECCe-Ee-----eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCC-----CCceEEEEeccccccc
Confidence 5789999999653 34 99999999999999999999999999999999996 7 899999998642 234
Q ss_pred eeEecccCCCCcccccce-------eeccCChHHHHHHHHHhhhhccccccc-cccccchhhHHHHHHhhhcc-CCCChH
Q 021147 149 TYFLQEYTIPRGVRHGEL-------VIRRSDSSSLRNRMRCKAHKIGCEPSV-IRKVNFVIFVVDGLAVLKSM-EGDSDV 219 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~-------~~~~~~~~~~r~~~~~~~~~ig~v~Q~-~~~~~~~~tv~eni~~~~~~-~~~~~~ 219 (317)
+|.+|+...-..+.+.+. .....+.... ..+.+.++|++|+ +.++. .+|+++|+.+.... ......
T Consensus 70 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~~~~~~~ 144 (520)
T TIGR03269 70 GYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLR----RRIRKRIAIMLQRTFALYG-DDTVLDNVLEALEEIGYEGKE 144 (520)
T ss_pred cccccccccccccccccccccccchhhhccCHHHH----HHhhhcEEEEeccccccCC-CCCHHHHHHHHHHHcCCCHHH
Confidence 566663211111100010 0111111110 1112349999997 44443 57999999875322 111223
Q ss_pred HHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 220 EKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 220 ~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
..+++.++++.+++.... +..+ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|++
T Consensus 145 ~~~~~~~~l~~~gl~~~~---~~~~--------~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 213 (520)
T TIGR03269 145 AVGRAVDLIEMVQLSHRI---THIA--------RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEE 213 (520)
T ss_pred HHHHHHHHHHHcCChhhh---hcCc--------ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHH
Confidence 345677889998874221 2233 6999999999999999999999999999999 999999999999999
Q ss_pred HHHh-------cCCCcchhhcccCCC
Q 021147 299 CLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 299 l~~~-------~~~~~~~~~~~~~~~ 317 (317)
+.+. ..|++..+..++|||
T Consensus 214 l~~~~g~tviivtHd~~~~~~~~d~i 239 (520)
T TIGR03269 214 AVKASGISMVLTSHWPEVIEDLSDKA 239 (520)
T ss_pred HHHhcCcEEEEEeCCHHHHHHhcCEE
Confidence 8543 567777777777774
No 291
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.9e-33 Score=248.94 Aligned_cols=165 Identities=19% Similarity=0.198 Sum_probs=133.7
Q ss_pred ceEEEeEEEEcCCC-----CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcc--cCCCCCCcCcEEEECc
Q 021147 71 LTDAKNKILSYTPG-----AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYNS 143 (317)
Q Consensus 71 ~I~~~nls~~y~~~-----~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~--~p~~~~p~~G~I~i~g 143 (317)
.|+++||+++|++. ..+ |+++||+|++|++++|+||||||||||+++|+|++ + |++|+|.++|
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~-----l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~-----~~~G~i~~~g 72 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQL-----LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL-----GVSGEVLING 72 (194)
T ss_pred EEEEEeeEEEEecCCCcccccc-----eecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-----CCceEEEECC
Confidence 48999999999752 334 99999999999999999999999999999999999 8 9999999999
Q ss_pred ccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHH
Q 021147 144 SVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQY 223 (317)
Q Consensus 144 ~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~ 223 (317)
++ +.. ..+++. ++|++|++.++. .+|+.+|+.+....
T Consensus 73 ~~----------------------~~~---~~~~~~-------i~~~~q~~~~~~-~~t~~~~i~~~~~~---------- 109 (194)
T cd03213 73 RP----------------------LDK---RSFRKI-------IGYVPQDDILHP-TLTVRETLMFAAKL---------- 109 (194)
T ss_pred Ee----------------------Cch---Hhhhhe-------EEEccCcccCCC-CCcHHHHHHHHHHh----------
Confidence 86 221 123333 999999986554 46899888643100
Q ss_pred HHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 224 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 224 ~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
..||+||+||+++|||++.+|+++|||||++ ||+.+++.+.+.|+++.+.
T Consensus 110 -----------------------------~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~ 160 (194)
T cd03213 110 -----------------------------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT 160 (194)
T ss_pred -----------------------------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 1599999999999999999999999999999 9999999999999987642
Q ss_pred ------cCCCcc-hhhcccCCC
Q 021147 303 ------ADRNLS-CKSCARNKV 317 (317)
Q Consensus 303 ------~~~~~~-~~~~~~~~~ 317 (317)
..|++. .+...+|++
T Consensus 161 ~~tiii~sh~~~~~~~~~~d~v 182 (194)
T cd03213 161 GRTIICSIHQPSSEIFELFDKL 182 (194)
T ss_pred CCEEEEEecCchHHHHHhcCEE
Confidence 345554 344555653
No 292
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.6e-33 Score=284.11 Aligned_cols=201 Identities=15% Similarity=0.160 Sum_probs=153.2
Q ss_pred CCceEEEeEEEEcCC----------CCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcE
Q 021147 69 GSLTDAKNKILSYTP----------GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ 138 (317)
Q Consensus 69 ~~~I~~~nls~~y~~----------~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~ 138 (317)
.++|+++||++.|+. ...+ |++|||+|++|+++||+||||||||||+|+|+|++ |++|+
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~i-----l~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~------~~~G~ 341 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVV-----VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI------NSQGE 341 (529)
T ss_pred CCcccccCcEEEeecCcccccccccccee-----eecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC------CCCcE
Confidence 458999999999952 1233 99999999999999999999999999999999997 45899
Q ss_pred EEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhc-cC--
Q 021147 139 VTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKS-ME-- 214 (317)
Q Consensus 139 I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~-~~-- 214 (317)
|+++|++ +...+...... +.+.+||+||++. .+...+|+.+|+.+... +.
T Consensus 342 i~~~g~~----------------------i~~~~~~~~~~----~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~ 395 (529)
T PRK15134 342 IWFDGQP----------------------LHNLNRRQLLP----VRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPT 395 (529)
T ss_pred EEECCEE----------------------ccccchhhHHH----hhhceEEEEeCchhhcCCcccHHHHHHHHHHhcccc
Confidence 9999976 33333222110 1123999999873 24445799999987532 11
Q ss_pred CCChHHHHHHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHH
Q 021147 215 GDSDVEKQYNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELII 292 (317)
Q Consensus 215 ~~~~~~~~~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l 292 (317)
.......+++.++++.+++. ... +... .+||||||||++||||++.+|+++||||||+ ||+.++..+
T Consensus 396 ~~~~~~~~~~~~~l~~~~l~~~~~---~~~~--------~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l 464 (529)
T PRK15134 396 LSAAQREQQVIAVMEEVGLDPETR---HRYP--------AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQI 464 (529)
T ss_pred CChHHHHHHHHHHHHHcCCCHHHH---hcCC--------ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHH
Confidence 11122345567788888874 121 2333 6999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHh-------cCCCcchhhcccCCC
Q 021147 293 VDMLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 293 ~~~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
.+.|+++.+. ..|++..+..++|||
T Consensus 465 ~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i 496 (529)
T PRK15134 465 LALLKSLQQKHQLAYLFISHDLHVVRALCHQV 496 (529)
T ss_pred HHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeE
Confidence 9999988643 567777777777774
No 293
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-33 Score=259.26 Aligned_cols=200 Identities=19% Similarity=0.182 Sum_probs=161.2
Q ss_pred CceEEEeEEEEcCCCCc------------------cccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCC
Q 021147 70 SLTDAKNKILSYTPGAW------------------IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK 131 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~------------------~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~ 131 (317)
..|+++||++-|+.+.. .-.+-+++|+||+|+.||++.|.|-||||||||+|+|++|++
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--- 79 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--- 79 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC---
Confidence 35889999998864311 012345899999999999999999999999999999999999
Q ss_pred CCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhh
Q 021147 132 FASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK 211 (317)
Q Consensus 132 ~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~ 211 (317)
|++|+|+++|.+ +...+...++.. ..+++++|||...|++ ++||.+|..|+.
T Consensus 80 --pt~G~ilv~g~d----------------------i~~~~~~~Lr~~---Rr~~~sMVFQ~FaLlP-hrtVl~Nv~fGL 131 (386)
T COG4175 80 --PTRGEILVDGKD----------------------IAKLSAAELREL---RRKKISMVFQSFALLP-HRTVLENVAFGL 131 (386)
T ss_pred --CCCceEEECCcc----------------------hhcCCHHHHHHH---Hhhhhhhhhhhhcccc-chhHhhhhhcce
Confidence 999999999997 555666555432 1235999999988776 799999999987
Q ss_pred ccCCC-ChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHH
Q 021147 212 SMEGD-SDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENE 289 (317)
Q Consensus 212 ~~~~~-~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~ 289 (317)
....- ..+..++..+.++.+|+..+ .+.|+ .+|||||+||+.+||||+.+|+++++|||+| |||--+
T Consensus 132 ev~Gv~~~er~~~a~~~l~~VgL~~~--~~~yp---------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR 200 (386)
T COG4175 132 EVQGVPKAEREERALEALELVGLEGY--ADKYP---------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIR 200 (386)
T ss_pred eecCCCHHHHHHHHHHHHHHcCchhh--hhcCc---------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHH
Confidence 65443 34566777888999998432 34677 5999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHhcCCCcchhh
Q 021147 290 LIIVDMLRYCLEHADRNLSCKS 311 (317)
Q Consensus 290 ~~l~~~l~~l~~~~~~~~~~~~ 311 (317)
..+++-|.++-+...+-+-+++
T Consensus 201 ~~mQdeLl~Lq~~l~KTIvFit 222 (386)
T COG4175 201 TEMQDELLELQAKLKKTIVFIT 222 (386)
T ss_pred HHHHHHHHHHHHHhCCeEEEEe
Confidence 9999999888665444444443
No 294
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-33 Score=243.65 Aligned_cols=195 Identities=14% Similarity=0.175 Sum_probs=151.8
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
++.|+++|+.++|+.... |++|||+..+|+++.|||.|||||||++|||+-|.. |++|+|.++|...+.
T Consensus 4 ~~~l~v~dlHK~~G~~eV------LKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~-----P~~G~I~v~geei~~ 72 (256)
T COG4598 4 ENALEVEDLHKRYGEHEV------LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-----PSAGSIRVNGEEIRL 72 (256)
T ss_pred ccceehhHHHhhcccchh------hcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC-----CCCceEEECCeEEEe
Confidence 346999999999987654 999999999999999999999999999999999999 999999999985220
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc--cCCCChHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS--MEGDSDVEKQYNQI 226 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~--~~~~~~~~~~~~~~ 226 (317)
... +.+. +...+.++ +..+..++|+|||...++. .+||.+|+.-..- ......+..++...
T Consensus 73 --k~~--------~~G~--l~~ad~~q----~~r~Rs~L~mVFQ~FNLWs-HmtvLeNViEaPvhVLg~~k~ea~e~Ae~ 135 (256)
T COG4598 73 --KRD--------KDGQ--LKPADKRQ----LQRLRTRLGMVFQHFNLWS-HMTVLENVIEAPVHVLGVSKAEAIERAEK 135 (256)
T ss_pred --eeC--------CCCC--eeeCCHHH----HHHHHHHhhHhhhhcchhH-HHHHHHHHHhcchHhhcCCHHHHHHHHHH
Confidence 000 0011 11233332 3333455999999988665 7999999853321 12233455667778
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
.+..+|+. ...+.|+ ..|||||+||++|||||+.+|.+++|||||| |||+---.+...++++.+.
T Consensus 136 ~L~kVGi~--ek~~~YP---------~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE 201 (256)
T COG4598 136 YLAKVGIA--EKADAYP---------AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE 201 (256)
T ss_pred HHHHhCch--hhhhcCc---------cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh
Confidence 88888873 2334788 5999999999999999999999999999999 9999999999999998654
No 295
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=2e-33 Score=254.63 Aligned_cols=180 Identities=16% Similarity=0.102 Sum_probs=139.2
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCC----cCcEEEECcccCceeeEecccCCCCcccccceee
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS----ERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVI 168 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p----~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~ 168 (317)
|+|+||+|++|++++|+||||||||||+|+|+|+++ | ++|+|+++|++ +
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~~~~~G~i~~~g~~----------------------~ 54 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP-----PGLTQTSGEILLDGRP----------------------L 54 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CccCccccEEEECCEe----------------------c
Confidence 899999999999999999999999999999999999 7 89999999976 3
Q ss_pred ccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhccC-CCChHHHHHHHHHHHHcCCCcc-cCCCCCCEE
Q 021147 169 RRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSME-GDSDVEKQYNQIVATTFNCPYL-SFRDDKPVV 245 (317)
Q Consensus 169 ~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~a~~~~l~~~-~l~~~~~~~ 245 (317)
... ...++ .++|++|++. .+...+|+.+|+.+..... .......+++.++++.++++.. ... +...
T Consensus 55 ~~~--~~~~~-------~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~- 123 (230)
T TIGR02770 55 LPL--SIRGR-------HIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVL-KKYP- 123 (230)
T ss_pred hhh--hhhhh-------eeEEEecCchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHH-hCCh-
Confidence 221 11112 3999999985 4555678999886543211 1112334567788998887411 011 2233
Q ss_pred EEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------cCCCcchhhcccCCC
Q 021147 246 VVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 246 i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
.+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+. ..|++..+...+|+|
T Consensus 124 -------~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i 196 (230)
T TIGR02770 124 -------FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEV 196 (230)
T ss_pred -------hhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 6899999999999999999999999999999 9999999999999988652 456777777777764
No 296
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=2.5e-33 Score=254.25 Aligned_cols=174 Identities=17% Similarity=0.145 Sum_probs=136.3
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
|+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|++ +...+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~----------------------~~~~~ 53 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ-----PTSGGVILEGKQ----------------------ITEPG 53 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEE----------------------CCCCC
Confidence 578999999999999999999999999999999999 999999999976 32222
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc--cCCCC-hHHHHHHHHHHHHcCCCcccCCCCCCEEEEec
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS--MEGDS-DVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH 249 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~--~~~~~-~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~h 249 (317)
. . .+|++|++.++. .+|+.+|+.+... ..... ....+++.++++.+++.... +...
T Consensus 54 ~-----~-------~~~v~q~~~l~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~----- 112 (230)
T TIGR01184 54 P-----D-------RMVVFQNYSLLP-WLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAA---DKRP----- 112 (230)
T ss_pred h-----h-------heEEecCcccCC-CCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHH---cCCh-----
Confidence 1 1 479999886554 5799999987521 11111 22334567788888874211 2233
Q ss_pred cchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------cCCCcchhhcccCCC
Q 021147 250 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 250 g~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
.+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+. ..|++..+...+|+|
T Consensus 113 ---~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v 185 (230)
T TIGR01184 113 ---GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRV 185 (230)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE
Confidence 6899999999999999999999999999999 9999999999999987643 456666666777764
No 297
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.3e-33 Score=281.18 Aligned_cols=199 Identities=15% Similarity=0.137 Sum_probs=153.1
Q ss_pred CceEEEeEEEEcCC--CCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCC-cCcEEEECcccC
Q 021147 70 SLTDAKNKILSYTP--GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYNSSVG 146 (317)
Q Consensus 70 ~~I~~~nls~~y~~--~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p-~~G~I~i~g~~~ 146 (317)
.+|+++|+++.|++ +..+ |+++||+|++||+++|+||||||||||+|+|+|+++ | ++|+|.++|++
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~-----l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~~G~i~~~g~~- 324 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKR-----VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP-----GKFEGNVFINGKP- 324 (500)
T ss_pred ceEEEeCCcccccccccccc-----cccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC-----CCCCeEEEECCEE-
Confidence 47999999999942 2234 999999999999999999999999999999999998 6 79999999976
Q ss_pred ceeeEecccCCCCcccccceeeccCCh-HHHHHHHHHhhhhccccccccc--cccchhhHHHHHHhhhc--cC---C-CC
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSDS-SSLRNRMRCKAHKIGCEPSVIR--KVNFVIFVVDGLAVLKS--ME---G-DS 217 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~ig~v~Q~~~--~~~~~~tv~eni~~~~~--~~---~-~~ 217 (317)
+..... ..+++ .+||++|++. .+...+|+++|+.+... .. . ..
T Consensus 325 ---------------------~~~~~~~~~~~~-------~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~ 376 (500)
T TIGR02633 325 ---------------------VDIRNPAQAIRA-------GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDA 376 (500)
T ss_pred ---------------------CCCCCHHHHHhC-------CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCH
Confidence 322221 22233 3999999963 23446799999976421 11 1 11
Q ss_pred hHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHH
Q 021147 218 DVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDML 296 (317)
Q Consensus 218 ~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l 296 (317)
....+++.++++.+++... .. ...+ ..||||||||++||||++.+|+++||||||+ ||+.++..+.+.+
T Consensus 377 ~~~~~~~~~~l~~~~l~~~-~~-~~~~--------~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 446 (500)
T TIGR02633 377 AAELQIIGSAIQRLKVKTA-SP-FLPI--------GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLI 446 (500)
T ss_pred HHHHHHHHHHHHhcCccCC-Cc-cCcc--------ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHH
Confidence 2234556778888886311 11 3344 6999999999999999999999999999999 9999999999999
Q ss_pred HHHHHh------cCCCcchhhcccCCC
Q 021147 297 RYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 297 ~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
+++.+. +.|++..+..++|||
T Consensus 447 ~~l~~~g~tviivsHd~~~~~~~~d~v 473 (500)
T TIGR02633 447 NQLAQEGVAIIVVSSELAEVLGLSDRV 473 (500)
T ss_pred HHHHhCCCEEEEECCCHHHHHHhCCEE
Confidence 998653 677778888888774
No 298
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-33 Score=246.49 Aligned_cols=167 Identities=17% Similarity=0.144 Sum_probs=133.5
Q ss_pred CceEEEeEEEEcCCC---CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccC
Q 021147 70 SLTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 70 ~~I~~~nls~~y~~~---~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~ 146 (317)
..|+++|+++.|++. ..+ |+++||+|++|++++|+||||||||||+++|+|++.+. |++|+|.++|++
T Consensus 2 ~~l~~~~l~~~~~~~~~~~~~-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~~~G~i~~~g~~- 72 (192)
T cd03232 2 SVLTWKNLNYTVPVKGGKRQL-----LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAG---VITGEILINGRP- 72 (192)
T ss_pred cEEEEeeeEEEecCCCCceEe-----EEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CcceEEEECCEe-
Confidence 468999999999641 233 99999999999999999999999999999999986321 789999999975
Q ss_pred ceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 226 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~ 226 (317)
+. ..+++. ++|++|++.++. ..|+++|+.+...
T Consensus 73 ---------------------~~----~~~~~~-------i~~~~q~~~~~~-~~tv~~~l~~~~~-------------- 105 (192)
T cd03232 73 ---------------------LD----KNFQRS-------TGYVEQQDVHSP-NLTVREALRFSAL-------------- 105 (192)
T ss_pred ---------------------hH----HHhhhc-------eEEecccCcccc-CCcHHHHHHHHHH--------------
Confidence 32 223333 999999886543 4789999875320
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+ ..||+||+||+++|||++.+|+++|+|||++ ||+.++..+.+.++++.+.
T Consensus 106 -~------------------------~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~t 160 (192)
T cd03232 106 -L------------------------RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQA 160 (192)
T ss_pred -H------------------------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCE
Confidence 0 0599999999999999999999999999999 9999999999999987642
Q ss_pred ---cCCCcch-hhcccCCC
Q 021147 303 ---ADRNLSC-KSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~-~~~~~~~~ 317 (317)
..|++.. +...+|||
T Consensus 161 iiivtH~~~~~~~~~~d~i 179 (192)
T cd03232 161 ILCTIHQPSASIFEKFDRL 179 (192)
T ss_pred EEEEEcCChHHHHhhCCEE
Confidence 3355542 44556653
No 299
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=5e-33 Score=251.50 Aligned_cols=182 Identities=15% Similarity=0.129 Sum_probs=137.5
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
+.++|++++|++.. + |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|+++|++
T Consensus 23 l~~~~~~~~~~~~~-i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~------ 85 (224)
T cd03220 23 LGILGRKGEVGEFW-A-----LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP-----PDSGTVTVRGRV------ 85 (224)
T ss_pred hhhhhhhhhcCCeE-E-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE------
Confidence 77888888887643 3 999999999999999999999999999999999999 999999999975
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~ 230 (317)
... .... .++ ...+|+.+|+.+...... ......+++.++++.
T Consensus 86 ----------------~~~-----~~~~-------~~~--------~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~ 129 (224)
T cd03220 86 ----------------SSL-----LGLG-------GGF--------NPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEF 129 (224)
T ss_pred ----------------chh-----hccc-------ccC--------CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 110 0000 222 124689999986543211 112233456677777
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------c
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------A 303 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~ 303 (317)
+++.... +..+ .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++.+. .
T Consensus 130 ~~l~~~~---~~~~--------~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~ 198 (224)
T cd03220 130 SELGDFI---DLPV--------KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILV 198 (224)
T ss_pred cCChhhh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 7764221 2333 6899999999999999999999999999999 9999999999999987543 3
Q ss_pred CCCcchhhcccCCC
Q 021147 304 DRNLSCKSCARNKV 317 (317)
Q Consensus 304 ~~~~~~~~~~~~~~ 317 (317)
.|+...+...+|++
T Consensus 199 sH~~~~~~~~~d~i 212 (224)
T cd03220 199 SHDPSSIKRLCDRA 212 (224)
T ss_pred eCCHHHHHHhCCEE
Confidence 35555555556653
No 300
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=3.1e-33 Score=241.85 Aligned_cols=153 Identities=18% Similarity=0.158 Sum_probs=126.7
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++|++++|+++..+ |+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 i~~~~~~~~~~~~~~~-----l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~~~~------ 64 (166)
T cd03223 1 IELENLSLATPDGRVL-----LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP-----WGSGRIGMPEGE------ 64 (166)
T ss_pred CEEEEEEEEcCCCCee-----eecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCCc------
Confidence 5789999999644344 999999999999999999999999999999999999 999999976631
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHc
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF 231 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~ 231 (317)
.++|++|++.++ ..|+.+|+.+.
T Consensus 65 ----------------------------------~i~~~~q~~~~~--~~tv~~nl~~~--------------------- 87 (166)
T cd03223 65 ----------------------------------DLLFLPQRPYLP--LGTLREQLIYP--------------------- 87 (166)
T ss_pred ----------------------------------eEEEECCCCccc--cccHHHHhhcc---------------------
Confidence 288898887644 45899998642
Q ss_pred CCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH---hcCCCc
Q 021147 232 NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE---HADRNL 307 (317)
Q Consensus 232 ~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~---~~~~~~ 307 (317)
.. .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++.. ...|+.
T Consensus 88 -----------~~--------~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~ 148 (166)
T cd03223 88 -----------WD--------DVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRP 148 (166)
T ss_pred -----------CC--------CCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCCh
Confidence 01 5899999999999999999999999999999 999999999999988621 244555
Q ss_pred chhhcccCCC
Q 021147 308 SCKSCARNKV 317 (317)
Q Consensus 308 ~~~~~~~~~~ 317 (317)
... +.+|++
T Consensus 149 ~~~-~~~d~i 157 (166)
T cd03223 149 SLW-KFHDRV 157 (166)
T ss_pred hHH-hhCCEE
Confidence 543 356653
No 301
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=4.5e-33 Score=247.53 Aligned_cols=165 Identities=18% Similarity=0.181 Sum_probs=130.0
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhc--ccCCCCCCcCcEEEECcccCcee
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl--~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
|+++||++.|++. .+ |+|+||+|++||+++|+|+||||||||+++|+|+ ++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~-~~-----l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-----p~~G~i~~~g~~---- 65 (200)
T cd03217 1 LEIKDLHVSVGGK-EI-----LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYE-----VTEGEILFKGED---- 65 (200)
T ss_pred CeEEEEEEEeCCE-Ee-----eeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCC-----CCccEEEECCEE----
Confidence 5789999999753 34 9999999999999999999999999999999999 46 899999999986
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
+...+.....+ ..++|+||++.+++ ..++.+++ +
T Consensus 66 ------------------~~~~~~~~~~~------~~i~~v~q~~~~~~-~~~~~~~l---------------------~ 99 (200)
T cd03217 66 ------------------ITDLPPEERAR------LGIFLAFQYPPEIP-GVKNADFL---------------------R 99 (200)
T ss_pred ------------------CCcCCHHHHhh------CcEEEeecChhhcc-CccHHHHH---------------------h
Confidence 43444322211 23999999876543 23444433 0
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 100 -----------~~~---------~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii 159 (200)
T cd03217 100 -----------YVN---------EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLI 159 (200)
T ss_pred -----------hcc---------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 111 3799999999999999999999999999999 9999999999999998643
Q ss_pred cCCCcchhhc-ccCCC
Q 021147 303 ADRNLSCKSC-ARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~-~~~~~ 317 (317)
..|++..+.. .+|++
T Consensus 160 ~sh~~~~~~~~~~d~i 175 (200)
T cd03217 160 ITHYQRLLDYIKPDRV 175 (200)
T ss_pred EecCHHHHHHhhCCEE
Confidence 3456666655 46653
No 302
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.3e-33 Score=234.22 Aligned_cols=184 Identities=19% Similarity=0.221 Sum_probs=148.3
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
.|+++|+++.|+..+. |-||+|+-+.||.+.++||||+|||||+|.|.-+.- |.+|+..+.|+.-.
T Consensus 2 sirv~~in~~yg~~q~------lfdi~l~~~~getlvllgpsgagkssllr~lnlle~-----p~sg~l~ia~~~fd--- 67 (242)
T COG4161 2 SIQLNGINCFYGAHQA------LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM-----PRSGTLNIAGNHFD--- 67 (242)
T ss_pred ceEEcccccccccchh------eeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC-----CCCCeEEecccccc---
Confidence 3889999999987754 999999999999999999999999999999999988 99999999887411
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc--CCCChHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM--EGDSDVEKQYNQIVA 228 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~--~~~~~~~~~~~~~~a 228 (317)
+..... .+.+.++.+.+|+|+|..++++ .+||.+|+--.... .-..+....+..+++
T Consensus 68 -----------------~s~~~~---~k~i~~lr~~vgmvfqqy~lwp-hltv~enlieap~kv~gl~~~qa~~~a~ell 126 (242)
T COG4161 68 -----------------FSKTPS---DKAIRDLRRNVGMVFQQYNLWP-HLTVQENLIEAPCRVLGLSKDQALARAEKLL 126 (242)
T ss_pred -----------------cccCcc---HHHHHHHHHhhhhhhhhhccCc-hhHHHHHHHhhhHHHhCCCHHHHHHHHHHHH
Confidence 222221 1334445556999999988665 79999998543211 222345566778888
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+.+.+.. +.+.++ ..|||||+||++|||||+..|.+++|||||+ |||+-...+.++|+++.
T Consensus 127 krlrl~~--~adr~p---------lhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~ 188 (242)
T COG4161 127 KRLRLKP--YADRYP---------LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELA 188 (242)
T ss_pred HHhcccc--ccccCc---------eecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHH
Confidence 8888732 344677 4999999999999999999999999999999 99999999999999984
No 303
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=5.7e-33 Score=239.46 Aligned_cols=144 Identities=15% Similarity=0.178 Sum_probs=118.4
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||++.|++. .+ ++++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~-~v-----l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~v~~~g~~------ 63 (163)
T cd03216 1 LELRGITKRFGGV-KA-----LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK-----PDSGEILVDGKE------ 63 (163)
T ss_pred CEEEEEEEEECCe-EE-----EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEE------
Confidence 5799999999754 34 999999999999999999999999999999999999 999999999975
Q ss_pred ecccCCCCcccccceeeccCChHH-HHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSS-LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+...+... .++ .++|++|
T Consensus 64 ----------------~~~~~~~~~~~~-------~i~~~~q-------------------------------------- 82 (163)
T cd03216 64 ----------------VSFASPRDARRA-------GIAMVYQ-------------------------------------- 82 (163)
T ss_pred ----------------CCcCCHHHHHhc-------CeEEEEe--------------------------------------
Confidence 22222211 111 2555444
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------c
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------A 303 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~ 303 (317)
||+||+||+++|||++.+|+++||||||+ ||+.+++.+.+.++++.+. .
T Consensus 83 ------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~ 138 (163)
T cd03216 83 ------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFI 138 (163)
T ss_pred ------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 89999999999999999999999999999 9999999999999988542 3
Q ss_pred CCCcchhhcccCCC
Q 021147 304 DRNLSCKSCARNKV 317 (317)
Q Consensus 304 ~~~~~~~~~~~~~~ 317 (317)
.|+...+...+||+
T Consensus 139 sh~~~~~~~~~d~~ 152 (163)
T cd03216 139 SHRLDEVFEIADRV 152 (163)
T ss_pred eCCHHHHHHhCCEE
Confidence 45566566666653
No 304
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.5e-32 Score=274.67 Aligned_cols=199 Identities=17% Similarity=0.156 Sum_probs=147.6
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCC-cCcEEEECcccCc
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYNSSVGD 147 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p-~~G~I~i~g~~~~ 147 (317)
.++|+++|+++.|++.. + |+|+||+|++||+++|+||||||||||+|+|+|+.+ | ++|+|+++|++.
T Consensus 258 ~~~l~~~~l~~~~~~~~-i-----l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~-----~~~~G~i~~~g~~~- 325 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRP-I-----LHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP-----QGYSNDLTLFGRRR- 325 (490)
T ss_pred CceEEEeceEEEECCee-E-----EeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----cccCCeEEEecccC-
Confidence 45899999999997543 4 999999999999999999999999999999999876 5 699999999751
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccc-hhhHHHHHHhhhc-----cCCCChHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF-VIFVVDGLAVLKS-----MEGDSDVEK 221 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~-~~tv~eni~~~~~-----~~~~~~~~~ 221 (317)
.........++. |||++|++.++.. ..++.+++.+... +........
T Consensus 326 --------------------~~~~~~~~~~~~-------i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (490)
T PRK10938 326 --------------------GSGETIWDIKKH-------IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQ 378 (490)
T ss_pred --------------------CCCCCHHHHHhh-------ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHH
Confidence 011122223333 9999998765432 2456666543211 111112234
Q ss_pred HHHHHHHHHcCCCc-ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 222 QYNQIVATTFNCPY-LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 222 ~~~~~~a~~~~l~~-~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
+++.++++.+++.. .. ..++ .+||||||||+++|||++.+|+++||||||+ ||+.+...+.+.|+++
T Consensus 379 ~~~~~~l~~~~l~~~~~---~~~~--------~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l 447 (490)
T PRK10938 379 KLAQQWLDILGIDKRTA---DAPF--------HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVL 447 (490)
T ss_pred HHHHHHHHHcCCchhhc---cCch--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 56778888888742 22 3344 7999999999999999999999999999999 9999999999999998
Q ss_pred HHh-------cCCCcchhhc-ccCCC
Q 021147 300 LEH-------ADRNLSCKSC-ARNKV 317 (317)
Q Consensus 300 ~~~-------~~~~~~~~~~-~~~~~ 317 (317)
.+. ..|+...+.. ++|+|
T Consensus 448 ~~~~~~tviivsHd~~~~~~~~~d~v 473 (490)
T PRK10938 448 ISEGETQLLFVSHHAEDAPACITHRL 473 (490)
T ss_pred HhcCCcEEEEEecchhhhhhhhheeE
Confidence 643 3355666654 45553
No 305
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.6e-33 Score=252.77 Aligned_cols=168 Identities=20% Similarity=0.246 Sum_probs=137.1
Q ss_pred CCceEEEeEEEEcCCCCc---cccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 69 GSLTDAKNKILSYTPGAW---IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~---~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
+.+++++||++.|+.+.. ...+.|++||||+|++||+++|||+||||||||.|+|.||++ |++|+|+++|++
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~-----pt~G~i~f~g~~ 76 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE-----PTSGEILFEGKD 76 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC-----CCCceEEEcCcc
Confidence 457999999999964321 112456999999999999999999999999999999999999 999999999986
Q ss_pred CceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQ 225 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~ 225 (317)
+..++. .+..+++.
T Consensus 77 ----------------------i~~~~~--------------------------------------------~~~~~~v~ 90 (268)
T COG4608 77 ----------------------ITKLSK--------------------------------------------EERRERVL 90 (268)
T ss_pred ----------------------hhhcch--------------------------------------------hHHHHHHH
Confidence 222221 12233466
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++++.++++.. ....|+ .+|||||+||++|||||+.+|+++|+|||+| ||...+..+.+++.++.+.
T Consensus 91 elL~~Vgl~~~-~~~ryP---------helSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~ 160 (268)
T COG4608 91 ELLEKVGLPEE-FLYRYP---------HELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELG 160 (268)
T ss_pred HHHHHhCCCHH-HhhcCC---------cccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhC
Confidence 77777776422 223577 5999999999999999999999999999999 9999999999999998654
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
-.|+++.+..++|||
T Consensus 161 lt~lFIsHDL~vv~~isdri 180 (268)
T COG4608 161 LTYLFISHDLSVVRYISDRI 180 (268)
T ss_pred CeEEEEEEEHHhhhhhcccE
Confidence 578899999999885
No 306
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1e-32 Score=261.68 Aligned_cols=253 Identities=13% Similarity=0.123 Sum_probs=188.2
Q ss_pred cccccccccccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc-----CCCCceEEEeEEEEcCCCCc-----cccc
Q 021147 21 PVDDFDIPLLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT-----RIGSLTDAKNKILSYTPGAW-----IENV 90 (317)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~I~~~nls~~y~~~~~-----~~~~ 90 (317)
.+-|+...+-.|..-.....-..|....-.+.+ .+++..|.-.. ...+.++.++|...|+-+.. +..+
T Consensus 223 ~~ADrV~VM~~G~ivE~~~t~~lF~~PqHpYTr--~Ll~aeP~g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~ 300 (534)
T COG4172 223 KFADRVYVMQHGEIVETGTTETLFAAPQHPYTR--KLLAAEPSGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHL 300 (534)
T ss_pred HhhhhEEEEeccEEeecCcHHHHhhCCCChHHH--HHHhcCCCCCCCCCCCCCCceEEecceEEEEecCCccccccchhe
Confidence 344555666666665555544444443333333 45655544322 12357999999999953321 2235
Q ss_pred cCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeecc
Q 021147 91 GGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRR 170 (317)
Q Consensus 91 ~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~ 170 (317)
.|+++|||++++||++||||+||||||||-.+|.+|++ +. |+|+|+|++ +..
T Consensus 301 ~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~-----s~-G~I~F~G~~----------------------i~~ 352 (534)
T COG4172 301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-----SQ-GEIRFDGQD----------------------IDG 352 (534)
T ss_pred EEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC-----cC-ceEEECCcc----------------------ccc
Confidence 67999999999999999999999999999999999997 65 999999997 555
Q ss_pred CChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhcc--CC-CChHHHHHHHHHHHHcCCCcccCCCCCCEEE
Q 021147 171 SDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSM--EG-DSDVEKQYNQIVATTFNCPYLSFRDDKPVVV 246 (317)
Q Consensus 171 ~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~--~~-~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i 246 (317)
++.+.++.. .+++-+|||||+ -+++.+||.+-|.-+..- +. ...+..+++.++++.+|++... .+.|+
T Consensus 353 ~~~~~mrpl----R~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~-r~RYP--- 424 (534)
T COG4172 353 LSRKEMRPL----RRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPAT-RNRYP--- 424 (534)
T ss_pred cChhhhhhh----hhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhH-hhcCC---
Confidence 555444322 234999999997 678889999888755422 12 2234567788999999995322 23688
Q ss_pred EeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------cCCCcchhhcccCCC
Q 021147 247 VTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 247 ~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
.++||||||||+||||++.+|++++|||||| ||..-+..+.++++++-+. -+|++.++..+||+|
T Consensus 425 ------hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~v 497 (534)
T COG4172 425 ------HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRV 497 (534)
T ss_pred ------cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceE
Confidence 5999999999999999999999999999999 9999999999999998654 467888888888875
No 307
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-32 Score=295.81 Aligned_cols=214 Identities=15% Similarity=0.113 Sum_probs=182.2
Q ss_pred hHHHHHHHHHHHHHHHHHHcccccc-----------ccCCCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEE
Q 021147 40 SWDSLVDQRRRDAVFREVLQSYDQL-----------RTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLL 108 (317)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaI 108 (317)
....+.....+.+|+.|..+.+++. ..+..+.|+|+|++.+|..+.+.+ |+||||+|+|||.+||
T Consensus 1096 ~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~V----Lk~is~~I~p~eKVGI 1171 (1381)
T KOG0054|consen 1096 QSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLV----LKGISFTIKPGEKVGI 1171 (1381)
T ss_pred HHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcch----hcCceEEEcCCceEEE
Confidence 3344445667888998887754441 113457899999999997664333 9999999999999999
Q ss_pred EcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhcc
Q 021147 109 IGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIG 188 (317)
Q Consensus 109 vG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig 188 (317)
||.+|||||||+++|.++.+ |.+|+|.|||.+ +.++....+|++ ++
T Consensus 1172 VGRTGaGKSSL~~aLFRl~e-----~~~G~I~IDgvd----------------------I~~igL~dLRsr-------ls 1217 (1381)
T KOG0054|consen 1172 VGRTGAGKSSLILALFRLVE-----PAEGEILIDGVD----------------------ISKIGLHDLRSR-------LS 1217 (1381)
T ss_pred eCCCCCCHHHHHHHHHHhcC-----ccCCeEEEcCee----------------------cccccHHHHHhc-------Ce
Confidence 99999999999999999999 999999999988 788999999998 99
Q ss_pred ccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhccc
Q 021147 189 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLG 266 (317)
Q Consensus 189 ~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~ia 266 (317)
++||+|.+|.+ |++.|+.-.+ +-.++++.++++.+.+. +..+|.+.+..+.+.| .++|-||||-+++|
T Consensus 1218 IIPQdPvLFsG--TvR~NLDPf~------e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG--~N~SvGQRQLlCLA 1287 (1381)
T KOG0054|consen 1218 IIPQDPVLFSG--TVRFNLDPFD------EYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGG--ENFSVGQRQLLCLA 1287 (1381)
T ss_pred eeCCCCceecC--ccccccCccc------ccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCC--ccCChHHHHHHHHH
Confidence 99999999987 9999985322 22334599999999982 4567889999999999 89999999999999
Q ss_pred ceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 267 ELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 267 ral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
|||+++++++||||+|+ +|+.|...|++.|++..+
T Consensus 1288 RALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~ 1323 (1381)
T KOG0054|consen 1288 RALLRKSKILVLDEATASVDPETDALIQKTIREEFK 1323 (1381)
T ss_pred HHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc
Confidence 99999999999999999 999999999999998653
No 308
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.98 E-value=9.8e-32 Score=251.29 Aligned_cols=182 Identities=18% Similarity=0.142 Sum_probs=134.7
Q ss_pred HHHHHHcccccccc-----CCCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 53 VFREVLQSYDQLRT-----RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 53 ~~~~~~~~~~~~~~-----~~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.+.++++.+++... ...+.|+++|+++. .. .+ |+++||+|++||+++|+|+||||||||+++|+|++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~nls~~--~~-~v-----L~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 16 GFGELLEKAKQENNDRKHSSDDNNLFFSNLCLV--GA-PV-----LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred HHHHHHhcccccccccccCCCCCeEEEEEEEEe--cc-cc-----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46677777655433 23457999999985 22 33 99999999999999999999999999999999999
Q ss_pred cCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHH
Q 021147 128 ENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGL 207 (317)
Q Consensus 128 ~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni 207 (317)
+ |++|+|.++|. |+|++|++.++. .|+.+|+
T Consensus 88 ~-----p~~G~I~i~g~------------------------------------------i~yv~q~~~l~~--~tv~enl 118 (282)
T cd03291 88 E-----PSEGKIKHSGR------------------------------------------ISFSSQFSWIMP--GTIKENI 118 (282)
T ss_pred C-----CCCcEEEECCE------------------------------------------EEEEeCcccccc--cCHHHHh
Confidence 9 99999998763 677777765554 3788888
Q ss_pred HhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-C
Q 021147 208 AVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-S 284 (317)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-L 284 (317)
.+..... . .++.++++.+++. ...++.++.+.+..+. ..||+||+||+++|||++.+|+++||||||+ |
T Consensus 119 ~~~~~~~---~---~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~--~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gL 190 (282)
T cd03291 119 IFGVSYD---E---YRYKSVVKACQLEEDITKFPEKDNTVLGEGG--ITLSGGQRARISLARAVYKDADLYLLDSPFGYL 190 (282)
T ss_pred hcccccC---H---HHHHHHHHHhCCHHHHHhccccccceecCCC--CcCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence 7542211 1 1223444444442 1112333433343444 6999999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHH-HHH
Q 021147 285 DPENELIIVDML-RYC 299 (317)
Q Consensus 285 D~~t~~~l~~~l-~~l 299 (317)
|+.++..+.+.+ +++
T Consensus 191 D~~~~~~l~~~ll~~~ 206 (282)
T cd03291 191 DVFTEKEIFESCVCKL 206 (282)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 999999988754 444
No 309
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.98 E-value=2.5e-32 Score=273.85 Aligned_cols=192 Identities=13% Similarity=0.076 Sum_probs=149.8
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||++ .+ |+++||+|.+||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 256 ~~l~~~~l~~------~~-----l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~-----p~~G~I~~~g~~---- 315 (501)
T PRK10762 256 VRLKVDNLSG------PG-----VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP-----RTSGYVTLDGHE---- 315 (501)
T ss_pred cEEEEeCccc------CC-----cccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE----
Confidence 4799999984 13 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCChH-HHHHHHHHhhhhccccccccc--cccchhhHHHHHHhhhc-cC------CCChH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSS-SLRNRMRCKAHKIGCEPSVIR--KVNFVIFVVDGLAVLKS-ME------GDSDV 219 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~ig~v~Q~~~--~~~~~~tv~eni~~~~~-~~------~~~~~ 219 (317)
+...+.. .+++ .+||+||++. .+...+|+.+|+.+... .. .....
T Consensus 316 ------------------i~~~~~~~~~~~-------~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 370 (501)
T PRK10762 316 ------------------VVTRSPQDGLAN-------GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHAD 370 (501)
T ss_pred ------------------CCCCCHHHHHHC-------CCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHH
Confidence 3333322 1222 3999999963 23446799999986421 10 01122
Q ss_pred HHHHHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHH
Q 021147 220 EKQYNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLR 297 (317)
Q Consensus 220 ~~~~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~ 297 (317)
..+++.++++.+++. ... +... .+||||||||+++|||++.+|+++||||||+ ||+.++..+.+.|+
T Consensus 371 ~~~~~~~~l~~~~l~~~~~---~~~~--------~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 439 (501)
T PRK10762 371 EQQAVSDFIRLFNIKTPSM---EQAI--------GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLIN 439 (501)
T ss_pred HHHHHHHHHHhcCCCCCCc---cCch--------hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHH
Confidence 345567788888873 211 3344 7999999999999999999999999999999 99999999999999
Q ss_pred HHHHh------cCCCcchhhcccCCC
Q 021147 298 YCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 298 ~l~~~------~~~~~~~~~~~~~~~ 317 (317)
++.+. ..|++..+..++|||
T Consensus 440 ~~~~~g~tviivtHd~~~~~~~~d~v 465 (501)
T PRK10762 440 QFKAEGLSIILVSSEMPEVLGMSDRI 465 (501)
T ss_pred HHHHCCCEEEEEcCCHHHHHhhCCEE
Confidence 98642 567777777777774
No 310
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=4.1e-32 Score=275.52 Aligned_cols=219 Identities=16% Similarity=0.114 Sum_probs=142.6
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
++||+++||+++|+++..+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+++. ..+
T Consensus 4 ~~~l~i~~l~~~y~~~~~i-----l~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~-----p~~G~i~~~~~-~~i 72 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQI-----LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-----EFEGEARPAPG-IKV 72 (556)
T ss_pred cEEEEEeeEEEEeCCCCee-----eeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCC-CEE
Confidence 3589999999999722334 999999999999999999999999999999999999 99999998754 356
Q ss_pred eeEecccCCCCcccccceeeccCChHHHH---HHHHHhhhhccccccccccccchhhHHHHHH-hhhccCCCChHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLR---NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLA-VLKSMEGDSDVEKQYN 224 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r---~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~-~~~~~~~~~~~~~~~~ 224 (317)
+|+||++.+++..++.++..... ..+. ..........+....+. ...+.-.+.+. ..... ......+++
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~ 145 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGV--AEVKAALDRFNEIYAAYAEPDADF---DALAAEQGELQEIIDAA--DAWDLDSQL 145 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhh--HHHHHHHHHHHHHHHHhccCchhh---HHHHHHHHHHHHHHHhc--CccchHHHH
Confidence 77777766655544433211000 0000 00000000000000000 00000000000 00000 001123456
Q ss_pred HHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH--
Q 021147 225 QIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE-- 301 (317)
Q Consensus 225 ~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~-- 301 (317)
..+++.++++. . ...+ .+||||||||++||||++.+|+++||||||+ ||+.+...+.+.|+++..
T Consensus 146 ~~~l~~~gl~~-~---~~~~--------~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tv 213 (556)
T PRK11819 146 EIAMDALRCPP-W---DAKV--------TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTV 213 (556)
T ss_pred HHHHHhCCCCc-c---cCch--------hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeE
Confidence 77888888742 1 3444 7999999999999999999999999999999 999999999999988531
Q ss_pred -hcCCCcchhhcccCCC
Q 021147 302 -HADRNLSCKSCARNKV 317 (317)
Q Consensus 302 -~~~~~~~~~~~~~~~~ 317 (317)
...|++..+..++|+|
T Consensus 214 iiisHd~~~~~~~~d~i 230 (556)
T PRK11819 214 VAVTHDRYFLDNVAGWI 230 (556)
T ss_pred EEEeCCHHHHHhhcCeE
Confidence 3567777777777764
No 311
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.97 E-value=8.7e-32 Score=270.53 Aligned_cols=194 Identities=13% Similarity=0.113 Sum_probs=148.6
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++|+++ . . |++|||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 266 ~~~l~~~~l~~-----~-~-----l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~--- 326 (510)
T PRK15439 266 APVLTVEDLTG-----E-G-----FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP-----ARGGRIMLNGKE--- 326 (510)
T ss_pred CceEEEeCCCC-----C-C-----ccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCcEEEECCEE---
Confidence 34899999993 1 3 999999999999999999999999999999999999 999999999976
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc--cccchhhHHHHHHhhh----ccCCCChHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR--KVNFVIFVVDGLAVLK----SMEGDSDVEKQ 222 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~--~~~~~~tv~eni~~~~----~~~~~~~~~~~ 222 (317)
+...+..... ...|+|+||++. .+...+|+.+|+.... ..........+
T Consensus 327 -------------------i~~~~~~~~~------~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~ 381 (510)
T PRK15439 327 -------------------INALSTAQRL------ARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENA 381 (510)
T ss_pred -------------------CCCCCHHHHH------hCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHH
Confidence 3333332211 123999999852 2334578999985321 11111122234
Q ss_pred HHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 223 ~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
++.++++.++++ ... +.+. .+||||||||++||||++.+|+++||||||+ ||+.+++.+.+.|+++.
T Consensus 382 ~~~~~l~~~~l~~~~~---~~~~--------~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~ 450 (510)
T PRK15439 382 VLERYRRALNIKFNHA---EQAA--------RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIA 450 (510)
T ss_pred HHHHHHHHcCCCCCCc---cCcc--------ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHH
Confidence 566788888873 221 3344 7999999999999999999999999999999 99999999999999986
Q ss_pred Hh------cCCCcchhhcccCCC
Q 021147 301 EH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 301 ~~------~~~~~~~~~~~~~~~ 317 (317)
+. ..|++..+..++|||
T Consensus 451 ~~g~tiIivsHd~~~i~~~~d~i 473 (510)
T PRK15439 451 AQNVAVLFISSDLEEIEQMADRV 473 (510)
T ss_pred hCCCEEEEECCCHHHHHHhCCEE
Confidence 43 667777777778874
No 312
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=8.6e-32 Score=269.94 Aligned_cols=193 Identities=15% Similarity=0.139 Sum_probs=148.5
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
..++++|+++. .+ ++|+||+|++||++||+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 256 ~~l~~~~~~~~-----~~-----l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~g~~---- 316 (501)
T PRK11288 256 VRLRLDGLKGP-----GL-----REPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR-----RTAGQVYLDGKP---- 316 (501)
T ss_pred cEEEEeccccC-----Cc-----ccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc-----CCCceEEECCEE----
Confidence 36999999842 23 999999999999999999999999999999999999 999999999975
Q ss_pred eEecccCCCCcccccceeeccCCh-HHHHHHHHHhhhhccccccccc--cccchhhHHHHHHhhhc-cC---C---CChH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDS-SSLRNRMRCKAHKIGCEPSVIR--KVNFVIFVVDGLAVLKS-ME---G---DSDV 219 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~ig~v~Q~~~--~~~~~~tv~eni~~~~~-~~---~---~~~~ 219 (317)
+..... ...++ .++|++|++. .+...+|+.+|+.+... .. . ....
T Consensus 317 ------------------~~~~~~~~~~~~-------~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 371 (501)
T PRK11288 317 ------------------IDIRSPRDAIRA-------GIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRW 371 (501)
T ss_pred ------------------CCCCCHHHHHhC-------CCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHH
Confidence 322222 12222 3999999873 23346899999876421 10 0 1112
Q ss_pred HHHHHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHH
Q 021147 220 EKQYNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLR 297 (317)
Q Consensus 220 ~~~~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~ 297 (317)
..+.+.++++.+++. ... +.+. .+||||||||++||||++.+|+++||||||+ ||+.++..+.++|+
T Consensus 372 ~~~~~~~~l~~~~l~~~~~---~~~~--------~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 440 (501)
T PRK11288 372 EAENADRFIRSLNIKTPSR---EQLI--------MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIY 440 (501)
T ss_pred HHHHHHHHHHhcCcccCCc---cCcc--------ccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHH
Confidence 234566778888862 211 3344 6999999999999999999999999999999 99999999999999
Q ss_pred HHHHh------cCCCcchhhcccCCC
Q 021147 298 YCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 298 ~l~~~------~~~~~~~~~~~~~~~ 317 (317)
++.+. ..|+...+..++||+
T Consensus 441 ~l~~~g~tviivsHd~~~~~~~~d~i 466 (501)
T PRK11288 441 ELAAQGVAVLFVSSDLPEVLGVADRI 466 (501)
T ss_pred HHHhCCCEEEEECCCHHHHHhhCCEE
Confidence 98653 557778888888874
No 313
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=6.4e-32 Score=247.89 Aligned_cols=173 Identities=15% Similarity=0.257 Sum_probs=131.2
Q ss_pred EEcCCCCccccccCceeeeeEec-----CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEec
Q 021147 79 LSYTPGAWIENVGGMTLSDYDVP-----KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQ 153 (317)
Q Consensus 79 ~~y~~~~~~~~~~~L~~isl~I~-----~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q 153 (317)
|+|++.... +++++|++. +||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 ~~y~~~~~~-----~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~-----p~~G~i~~~g~~-------- 62 (246)
T cd03237 1 YTYPTMKKT-----LGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK-----PDEGDIEIELDT-------- 62 (246)
T ss_pred CCCcccccc-----cCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCCeEEECCce--------
Confidence 456544333 778888876 799999999999999999999999999 999999988742
Q ss_pred ccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCC
Q 021147 154 EYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNC 233 (317)
Q Consensus 154 ~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l 233 (317)
|+|++|++..+ ..+||.+|+.+........ .....++++.+++
T Consensus 63 ---------------------------------i~~~~q~~~~~-~~~tv~e~l~~~~~~~~~~---~~~~~~~l~~l~l 105 (246)
T cd03237 63 ---------------------------------VSYKPQYIKAD-YEGTVRDLLSSITKDFYTH---PYFKTEIAKPLQI 105 (246)
T ss_pred ---------------------------------EEEecccccCC-CCCCHHHHHHHHhhhcccc---HHHHHHHHHHcCC
Confidence 67777765422 2468888886432211111 1224567777776
Q ss_pred CcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------cCC
Q 021147 234 PYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-------ADR 305 (317)
Q Consensus 234 ~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-------~~~ 305 (317)
.... +..+ .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+. ..|
T Consensus 106 ~~~~---~~~~--------~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH 174 (246)
T cd03237 106 EQIL---DREV--------PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174 (246)
T ss_pred HHHh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4211 2333 6899999999999999999999999999999 9999999999999998643 566
Q ss_pred CcchhhcccCCC
Q 021147 306 NLSCKSCARNKV 317 (317)
Q Consensus 306 ~~~~~~~~~~~~ 317 (317)
++..+...+|+|
T Consensus 175 d~~~~~~~~d~i 186 (246)
T cd03237 175 DIIMIDYLADRL 186 (246)
T ss_pred CHHHHHHhCCEE
Confidence 777777777764
No 314
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.97 E-value=1.6e-31 Score=275.60 Aligned_cols=200 Identities=14% Similarity=0.147 Sum_probs=154.1
Q ss_pred CceEEEeEEEEcCCC---CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccC
Q 021147 70 SLTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 70 ~~I~~~nls~~y~~~---~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~ 146 (317)
++|+++|++++|+++ ..+ |+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|++
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~i-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~- 71 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEV-----LKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK-----PTSGTYRVAGQD- 71 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEE-
Confidence 479999999999642 233 999999999999999999999999999999999999 999999999986
Q ss_pred ceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQ 225 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~ 225 (317)
+...+...+.+. ..+.++|++|++.+++ ..|+.+|+.+...... ......+++.
T Consensus 72 ---------------------i~~~~~~~~~~~---~~~~i~~v~q~~~l~~-~~tv~enl~~~~~~~~~~~~~~~~~~~ 126 (648)
T PRK10535 72 ---------------------VATLDADALAQL---RREHFGFIFQRYHLLS-HLTAAQNVEVPAVYAGLERKQRLLRAQ 126 (648)
T ss_pred ---------------------cCcCCHHHHHHH---HhccEEEEeCCcccCC-CCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 444444333110 1123999999997654 4689999987543222 2233445667
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++++.+++.... +... ..||+||+||+++|||++.+|+++|||||++ ||+.+++.+.+.++++.+.
T Consensus 127 ~~l~~lgl~~~~---~~~~--------~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~ 195 (648)
T PRK10535 127 ELLQRLGLEDRV---EYQP--------SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGH 195 (648)
T ss_pred HHHHHCCChhhh---cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 788888874221 2233 6899999999999999999999999999999 9999999999999987642
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|+.....+ +||+
T Consensus 196 tilivsH~~~~~~~-~d~i 213 (648)
T PRK10535 196 TVIIVTHDPQVAAQ-AERV 213 (648)
T ss_pred EEEEECCCHHHHHh-CCEE
Confidence 3455555543 5653
No 315
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.97 E-value=1.6e-31 Score=295.94 Aligned_cols=224 Identities=17% Similarity=0.131 Sum_probs=171.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHcccccccc---CCCCceEEEeEEEEcCCCC-----------c----c----------
Q 021147 36 GSRDSWDSLVDQRRRDAVFREVLQSYDQLRT---RIGSLTDAKNKILSYTPGA-----------W----I---------- 87 (317)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~I~~~nls~~y~~~~-----------~----~---------- 87 (317)
.....+..+.++..+.+|+.++|..++.... .....++++|++|.|+... . .
T Consensus 354 ~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (1490)
T TIGR01271 354 QFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEYNLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSN 433 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCceEEecceEecCCccccccccccccccccccccccccccccc
Confidence 4556677788899999999999976543211 1123599999999995310 0 0
Q ss_pred ---ccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCccccc
Q 021147 88 ---ENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHG 164 (317)
Q Consensus 88 ---~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~ 164 (317)
....+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 434 ~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~-----~~~G~i~~~g~-------------------- 488 (1490)
T TIGR01271 434 FSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE-----PSEGKIKHSGR-------------------- 488 (1490)
T ss_pred cccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCE--------------------
Confidence 00124999999999999999999999999999999999999 99999998763
Q ss_pred ceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCC
Q 021147 165 ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDK 242 (317)
Q Consensus 165 ~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~ 242 (317)
|+|++|++.+++. ||+|||.|+..+. . .+..++++.+++. ...++.|.
T Consensus 489 ----------------------iayv~Q~~~l~~~--Ti~eNI~~g~~~~---~---~~~~~~~~~~~L~~~l~~l~~g~ 538 (1490)
T TIGR01271 489 ----------------------ISFSPQTSWIMPG--TIKDNIIFGLSYD---E---YRYTSVIKACQLEEDIALFPEKD 538 (1490)
T ss_pred ----------------------EEEEeCCCccCCc--cHHHHHHhccccc---h---HHHHHHHHHHhHHHHHHhccccc
Confidence 8999999988764 9999999875321 1 1233444444442 33467788
Q ss_pred CEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHH-HHHHHHh-----cCCCcchhhcccC
Q 021147 243 PVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDM-LRYCLEH-----ADRNLSCKSCARN 315 (317)
Q Consensus 243 ~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~-l~~l~~~-----~~~~~~~~~~~~~ 315 (317)
.+.++++| ..||||||||++||||++.+|+++|||||++ ||+.+++.+.+. +..+.+. ..|+++.+.. +|
T Consensus 539 ~t~vg~~g--~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~-ad 615 (1490)
T TIGR01271 539 KTVLGEGG--ITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKK-AD 615 (1490)
T ss_pred cccccCcC--CCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHh-CC
Confidence 89999998 8999999999999999999999999999999 999999999985 5555332 4466666654 66
Q ss_pred CC
Q 021147 316 KV 317 (317)
Q Consensus 316 ~~ 317 (317)
+|
T Consensus 616 ~i 617 (1490)
T TIGR01271 616 KI 617 (1490)
T ss_pred EE
Confidence 54
No 316
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.97 E-value=1.3e-31 Score=298.22 Aligned_cols=197 Identities=10% Similarity=0.106 Sum_probs=156.4
Q ss_pred CCceEEEeEEEEcCCC-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 69 GSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
..+|+++||++.|+++ ..+ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~a-----L~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~-----ptsG~I~i~G~~-- 2002 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPA-----VDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT-----VTSGDATVAGKS-- 2002 (2272)
T ss_pred CceEEEEEEEEEECCCCceE-----EEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEECCEE--
Confidence 4579999999999753 334 999999999999999999999999999999999999 999999999986
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc-CCCChHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM-EGDSDVEKQYNQI 226 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~-~~~~~~~~~~~~~ 226 (317)
+.. +....++. |||+||+..++. .+|++||+.+.... ........+.+.+
T Consensus 2003 --------------------i~~-~~~~~r~~-------IGy~pQ~~~L~~-~LTv~E~L~l~a~l~g~~~~~~~~~v~~ 2053 (2272)
T TIGR01257 2003 --------------------ILT-NISDVHQN-------MGYCPQFDAIDD-LLTGREHLYLYARLRGVPAEEIEKVANW 2053 (2272)
T ss_pred --------------------Ccc-hHHHHhhh-------EEEEeccccCCC-CCCHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 321 22233333 999999887554 58999999875332 2122223445667
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... +..+ .+||||||||+++|+|++.+|++++|||||+ ||+.+++.+.+.|+++.+.
T Consensus 2054 lLe~lgL~~~~---dk~~--------~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~T 2122 (2272)
T TIGR01257 2054 SIQSLGLSLYA---DRLA--------GTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRA 2122 (2272)
T ss_pred HHHHcCCHHHh---cCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 88888874222 3444 7999999999999999999999999999999 9999999999999997543
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|.+..+..+||||
T Consensus 2123 IILtTH~mee~e~lcDrV 2140 (2272)
T TIGR01257 2123 VVLTSHSMEECEALCTRL 2140 (2272)
T ss_pred EEEEeCCHHHHHHhCCEE
Confidence 456666777777774
No 317
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.97 E-value=1.6e-31 Score=297.71 Aligned_cols=196 Identities=12% Similarity=0.149 Sum_probs=155.3
Q ss_pred CceEEEeEEEEcCC-CCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 70 SLTDAKNKILSYTP-GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 70 ~~I~~~nls~~y~~-~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
..|+++||++.|++ ++.+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 927 ~~L~I~nLsK~y~~~~k~a-----L~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~-----PtsG~I~i~G~d--- 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPA-----VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP-----PTSGTVLVGGKD--- 993 (2272)
T ss_pred ceEEEEeEEEEecCCCceE-----EEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC-----CCceEEEECCEE---
Confidence 47999999999953 3334 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~ 227 (317)
+.. +...+++. +||+||+..+++ .+||.||+.+...... ......+++.++
T Consensus 994 -------------------I~~-~~~~~r~~-------IG~~pQ~~~L~~-~LTV~E~L~f~~~lkg~~~~~~~~~v~~l 1045 (2272)
T TIGR01257 994 -------------------IET-NLDAVRQS-------LGMCPQHNILFH-HLTVAEHILFYAQLKGRSWEEAQLEMEAM 1045 (2272)
T ss_pred -------------------Ccc-hHHHHhhc-------EEEEecCCcCCC-CCCHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 321 22333443 999999987654 5899999987543222 222334567788
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++.... +... .+||||||||+++|||++.+|+++||||||+ ||+.+++.+.++|+++.+.
T Consensus 1046 L~~vgL~~~~---~~~~--------~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TII 1114 (2272)
T TIGR01257 1046 LEDTGLHHKR---NEEA--------QDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTII 1114 (2272)
T ss_pred HHHcCCchhh---cCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9998874222 3333 7999999999999999999999999999999 9999999999999998421
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+|||
T Consensus 1115 ltTHdmdea~~laDrI 1130 (2272)
T TIGR01257 1115 MSTHHMDEADLLGDRI 1130 (2272)
T ss_pred EEECCHHHHHHhCCEE
Confidence 345555566666664
No 318
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9.9e-32 Score=271.24 Aligned_cols=182 Identities=15% Similarity=0.183 Sum_probs=143.8
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++||++.|++.. + |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+. .
T Consensus 318 ~~l~~~~l~~~~~~~~-~-----l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----p~~G~i~~~~~~-~-- 383 (530)
T PRK15064 318 NALEVENLTKGFDNGP-L-----FKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE-----PDSGTVKWSENA-N-- 383 (530)
T ss_pred ceEEEEeeEEeeCCce-e-----ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCce-E--
Confidence 4899999999997543 4 999999999999999999999999999999999999 999999987642 1
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
+||++|++. .+...+|+.+|+.+... . ....+++.+++
T Consensus 384 -------------------------------------i~~~~q~~~~~~~~~~t~~~~~~~~~~--~--~~~~~~~~~~l 422 (530)
T PRK15064 384 -------------------------------------IGYYAQDHAYDFENDLTLFDWMSQWRQ--E--GDDEQAVRGTL 422 (530)
T ss_pred -------------------------------------EEEEcccccccCCCCCcHHHHHHHhcc--C--CccHHHHHHHH
Confidence 777777653 24444678888764221 1 11234567788
Q ss_pred HHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH---hc
Q 021147 229 TTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE---HA 303 (317)
Q Consensus 229 ~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~---~~ 303 (317)
+.+++. ... +..+ .+|||||+||+++|||++.+|+++||||||+ ||+.+...+.+.|+++.. ..
T Consensus 423 ~~~~l~~~~~---~~~~--------~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~v 491 (530)
T PRK15064 423 GRLLFSQDDI---KKSV--------KVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFV 491 (530)
T ss_pred HHcCCChhHh---cCcc--------cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 888873 221 3334 7999999999999999999999999999999 999999999999988521 25
Q ss_pred CCCcchhhcccCCC
Q 021147 304 DRNLSCKSCARNKV 317 (317)
Q Consensus 304 ~~~~~~~~~~~~~~ 317 (317)
.|+...+...+|||
T Consensus 492 sHd~~~~~~~~d~i 505 (530)
T PRK15064 492 SHDREFVSSLATRI 505 (530)
T ss_pred eCCHHHHHHhCCEE
Confidence 67777777777764
No 319
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.2e-31 Score=266.28 Aligned_cols=196 Identities=13% Similarity=0.115 Sum_probs=145.9
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||++.| . .+ |+++||+|++||++||+||||||||||+|+|+|+.+ |++|+|.++|++
T Consensus 249 ~~i~~~~l~~~~--~-~~-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~---- 311 (491)
T PRK10982 249 VILEVRNLTSLR--Q-PS-----IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE-----KSAGTITLHGKK---- 311 (491)
T ss_pred cEEEEeCccccc--C-cc-----cceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc-----CCccEEEECCEE----
Confidence 579999999975 2 23 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc---cccchhhHHHHH-----Hhhhc-cCC-CChH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR---KVNFVIFVVDGL-----AVLKS-MEG-DSDV 219 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~---~~~~~~tv~eni-----~~~~~-~~~-~~~~ 219 (317)
+...+.... +.+.++|++|++. ++. .+++.+|. .+... +.. ....
T Consensus 312 ------------------i~~~~~~~~------~~~~i~~~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (491)
T PRK10982 312 ------------------INNHNANEA------INHGFALVTEERRSTGIYA-YLDIGFNSLISNIRNYKNKVGLLDNSR 366 (491)
T ss_pred ------------------CCCCCHHHH------HHCCCEEcCCchhhCCccc-CCcHHHheehhhhhhhcccccccCcHH
Confidence 333332211 1123999999853 233 45666653 22111 110 1122
Q ss_pred HHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 220 EKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 220 ~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
..+.+.++++.+++... .. +.+. .+||||||||++||||++.+|+++||||||+ ||+.++..+.+.+++
T Consensus 367 ~~~~~~~~l~~~~l~~~-~~-~~~~--------~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~ 436 (491)
T PRK10982 367 MKSDTQWVIDSMRVKTP-GH-RTQI--------GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAE 436 (491)
T ss_pred HHHHHHHHHHhcCccCC-Cc-cccc--------ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHH
Confidence 23445667777776211 11 3344 7999999999999999999999999999999 999999999999988
Q ss_pred HHHh------cCCCcchhhcccCCC
Q 021147 299 CLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 299 l~~~------~~~~~~~~~~~~~~~ 317 (317)
+.+. ..|+...+..++|||
T Consensus 437 l~~~~~tvi~vsHd~~~~~~~~d~v 461 (491)
T PRK10982 437 LAKKDKGIIIISSEMPELLGITDRI 461 (491)
T ss_pred HHHCCCEEEEECCChHHHHhhCCEE
Confidence 7643 667778788888874
No 320
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.2e-31 Score=270.70 Aligned_cols=218 Identities=14% Similarity=0.086 Sum_probs=150.3
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||+++|++. .+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|. ..++|
T Consensus 1 ml~i~~ls~~~~~~-~i-----l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~-~~i~~ 68 (530)
T PRK15064 1 MLSTANITMQFGAK-PL-----FENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE-----PSAGNVSLDPN-ERLGK 68 (530)
T ss_pred CEEEEEEEEEeCCc-Ee-----EeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCC-CEEEE
Confidence 58999999999754 34 999999999999999999999999999999999999 99999999985 35899
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
++|++.+++..++.++...... ...... .....+...+.. .....+++.+...+...... .....++.++++.
T Consensus 69 ~~q~~~~~~~~tv~e~l~~~~~--~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~ 141 (530)
T PRK15064 69 LRQDQFAFEEFTVLDTVIMGHT--ELWEVK-QERDRIYALPEM--SEEDGMKVADLEVKFAEMDG--YTAEARAGELLLG 141 (530)
T ss_pred EeccCCcCCCCcHHHHHHHhhH--HHHHHH-HHHHHHhccccc--ccchHHHHHHHHHHHHhcCc--hhHHHHHHHHHHh
Confidence 9998777766555443211110 000000 000001100100 01112344444433222111 1223456788888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH---HhcCCC
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL---EHADRN 306 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~---~~~~~~ 306 (317)
++++... ....+ .+|||||+||+++||||+.+|+++||||||+ ||+.++..+.+.|.+.- -...|+
T Consensus 142 ~gl~~~~--~~~~~--------~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd 211 (530)
T PRK15064 142 VGIPEEQ--HYGLM--------SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHD 211 (530)
T ss_pred CCCChhH--hcCch--------hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 8874211 12334 6999999999999999999999999999999 99999999999987521 136777
Q ss_pred cchhhcccCCC
Q 021147 307 LSCKSCARNKV 317 (317)
Q Consensus 307 ~~~~~~~~~~~ 317 (317)
...+..++|+|
T Consensus 212 ~~~~~~~~d~i 222 (530)
T PRK15064 212 RHFLNSVCTHM 222 (530)
T ss_pred HHHHHhhcceE
Confidence 77777777764
No 321
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=1.6e-31 Score=270.94 Aligned_cols=187 Identities=14% Similarity=0.117 Sum_probs=144.3
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++||++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++ +.
T Consensus 320 ~~~l~~~~l~~~~~~~-~~-----l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~G~i~~~~-~~-- 385 (552)
T TIGR03719 320 DKVIEAENLSKGFGDK-LL-----IDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ-----PDSGTIKIGE-TV-- 385 (552)
T ss_pred CeEEEEeeEEEEECCe-ee-----eccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCeEEEECC-ce--
Confidence 4589999999999754 34 999999999999999999999999999999999999 9999999743 21
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
. |||++|++..+...+|+.+|+.+........ ....+..+++
T Consensus 386 ------------------------------~-------i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~l 427 (552)
T TIGR03719 386 ------------------------------K-------LAYVDQSRDALDPNKTVWEEISGGLDIIQLG-KREVPSRAYV 427 (552)
T ss_pred ------------------------------E-------EEEEeCCccccCCCCcHHHHHHhhccccccC-cchHHHHHHH
Confidence 1 8888887543444578999987653211111 1112344677
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH---HhcC
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL---EHAD 304 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~---~~~~ 304 (317)
+.+++.... . ...+ .+|||||+||+++|||++.+|+++||||||+ ||+.+...+.+.|+++. -...
T Consensus 428 ~~~~l~~~~-~-~~~~--------~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivs 497 (552)
T TIGR03719 428 GRFNFKGSD-Q-QKKV--------GQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVIS 497 (552)
T ss_pred HhCCCChhH-h-cCch--------hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 888863110 1 2333 6999999999999999999999999999999 99999999999999862 1356
Q ss_pred CCcchhhcccCCC
Q 021147 305 RNLSCKSCARNKV 317 (317)
Q Consensus 305 ~~~~~~~~~~~~~ 317 (317)
|+...+...+|||
T Consensus 498 Hd~~~~~~~~d~i 510 (552)
T TIGR03719 498 HDRWFLDRIATHI 510 (552)
T ss_pred CCHHHHHHhCCEE
Confidence 6777777777764
No 322
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=2.3e-31 Score=269.84 Aligned_cols=218 Identities=15% Similarity=0.103 Sum_probs=138.8
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++||+++|++...+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++. ..++
T Consensus 3 ~~i~~~nls~~~~~~~~i-----l~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~-----p~~G~i~~~~~-~~i~ 71 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEI-----LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-----EFNGEARPAPG-IKVG 71 (552)
T ss_pred EEEEEeeEEEecCCCCee-----ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCC-CEEE
Confidence 479999999999733334 999999999999999999999999999999999999 99999998763 3567
Q ss_pred eEecccCCCCcccccceeeccCChHHHHH---HHHHhhhhccccccccc-cccchhhHHHHHHhhhccCCCChHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRN---RMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQ 225 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~---~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~~~~~~~~~~~~~ 225 (317)
|++|++.++++.++.++..... ...+. .........+....+.. +.....-+.+.+.. .. ......++.
T Consensus 72 ~v~Q~~~~~~~~tv~e~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~ 144 (552)
T TIGR03719 72 YLPQEPQLDPTKTVRENVEEGV--AEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDA---AD--AWDLDRKLE 144 (552)
T ss_pred EEeccCCCCCCCcHHHHHHHhh--HHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHh---cC--cchhHHHHH
Confidence 7777666555444433211000 00000 00000000000000000 00000000000000 00 001123455
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH---
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE--- 301 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~--- 301 (317)
++++.++++. . +.++ .+||||||||++||||++.+|+++||||||+ ||+.+...+.+.|+++..
T Consensus 145 ~~l~~~~l~~-~---~~~~--------~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvI 212 (552)
T TIGR03719 145 IAMDALRCPP-W---DADV--------TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVV 212 (552)
T ss_pred HHHhhCCCCc-c---cCch--------hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEE
Confidence 6666666531 1 3344 7999999999999999999999999999999 999999999999987521
Q ss_pred hcCCCcchhhcccCCC
Q 021147 302 HADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~~~~~~~~~~~~~~~~ 317 (317)
...|+...+..++|+|
T Consensus 213 iisHd~~~~~~~~d~v 228 (552)
T TIGR03719 213 AVTHDRYFLDNVAGWI 228 (552)
T ss_pred EEeCCHHHHHhhcCeE
Confidence 2566667777777764
No 323
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=2.1e-31 Score=270.32 Aligned_cols=187 Identities=15% Similarity=0.132 Sum_probs=144.5
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++||++.|++. .+ |+||||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++ +
T Consensus 322 ~~~l~~~~l~~~~~~~-~~-----l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----p~~G~i~~~~-~--- 386 (556)
T PRK11819 322 DKVIEAENLSKSFGDR-LL-----IDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ-----PDSGTIKIGE-T--- 386 (556)
T ss_pred CeEEEEEeEEEEECCe-ee-----ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECC-c---
Confidence 3589999999999754 34 999999999999999999999999999999999999 9999999743 2
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
. . |||+||++..+...+|+.+|+.+......... .......++
T Consensus 387 -------------------~----------~-------i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~-~~~~~~~~l 429 (556)
T PRK11819 387 -------------------V----------K-------LAYVDQSRDALDPNKTVWEEISGGLDIIKVGN-REIPSRAYV 429 (556)
T ss_pred -------------------e----------E-------EEEEeCchhhcCCCCCHHHHHHhhcccccccc-cHHHHHHHH
Confidence 1 1 88888875334445789999886532111111 112244678
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH---HhcC
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL---EHAD 304 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~---~~~~ 304 (317)
+.+++.... . +..+ .+|||||+||+++|||++.+|+++||||||+ ||+.+...+.+.|+++. -...
T Consensus 430 ~~~~l~~~~-~-~~~~--------~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vt 499 (556)
T PRK11819 430 GRFNFKGGD-Q-QKKV--------GVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVIS 499 (556)
T ss_pred HhCCCChhH-h-cCch--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEE
Confidence 888863111 1 3334 7999999999999999999999999999999 99999999999998862 1256
Q ss_pred CCcchhhcccCCC
Q 021147 305 RNLSCKSCARNKV 317 (317)
Q Consensus 305 ~~~~~~~~~~~~~ 317 (317)
|++..+..++|||
T Consensus 500 Hd~~~~~~~~d~i 512 (556)
T PRK11819 500 HDRWFLDRIATHI 512 (556)
T ss_pred CCHHHHHHhCCEE
Confidence 6777777777764
No 324
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.97 E-value=2.5e-31 Score=240.12 Aligned_cols=170 Identities=18% Similarity=0.228 Sum_probs=131.8
Q ss_pred eEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHH
Q 021147 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLR 177 (317)
Q Consensus 98 l~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r 177 (317)
|+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|++ +. ..+
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~----------------------~~-----~~~ 48 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP-----PAKGTVKVAGAS----------------------PG-----KGW 48 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCcc----------------------ch-----Hhh
Confidence 5789999999999999999999999999999 999999999975 21 122
Q ss_pred HHHHHhhhhccccccccccc-cchhhHHHHHHhhhcc-----CCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccc
Q 021147 178 NRMRCKAHKIGCEPSVIRKV-NFVIFVVDGLAVLKSM-----EGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGD 251 (317)
Q Consensus 178 ~~~~~~~~~ig~v~Q~~~~~-~~~~tv~eni~~~~~~-----~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~ 251 (317)
+ .++|++|++.++ ....|+.+|+.+.... ........+++.++++.+++.... +..+
T Consensus 49 ~-------~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~------- 111 (223)
T TIGR03771 49 R-------HIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELA---DRPV------- 111 (223)
T ss_pred C-------cEEEecccccccCCCCccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhh---cCCh-------
Confidence 2 399999988653 2347899999764211 011122345577888888874221 2233
Q ss_pred hhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 252 LLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
.+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++.+. ..|++..+...+|++
T Consensus 112 -~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i 183 (223)
T TIGR03771 112 -GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRV 183 (223)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 6899999999999999999999999999999 9999999999999988643 456666666667764
No 325
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.97 E-value=6.2e-31 Score=243.76 Aligned_cols=188 Identities=15% Similarity=0.071 Sum_probs=134.4
Q ss_pred ceEEEeEEEEcCCCC--------------ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcC
Q 021147 71 LTDAKNKILSYTPGA--------------WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER 136 (317)
Q Consensus 71 ~I~~~nls~~y~~~~--------------~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~ 136 (317)
.|+++||++.|.... ....+.+|+++||+|++|++++|+||||||||||+++|+|+++ |++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~-----p~~ 78 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS-----PTV 78 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCc
Confidence 488999998884321 0011235999999999999999999999999999999999999 999
Q ss_pred cEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-C
Q 021147 137 AQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-G 215 (317)
Q Consensus 137 G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~ 215 (317)
|+|.++|.. ++++| .+. +...+|+.+|+.+..... .
T Consensus 79 G~I~~~g~~---~~~~~---------------------------------------~~~-~~~~~tv~enl~~~~~~~~~ 115 (264)
T PRK13546 79 GKVDRNGEV---SVIAI---------------------------------------SAG-LSGQLTGIENIEFKMLCMGF 115 (264)
T ss_pred eEEEECCEE---eEEec---------------------------------------ccC-CCCCCcHHHHHHHHHHHcCC
Confidence 999998852 12222 111 112347788886543211 1
Q ss_pred CChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHH
Q 021147 216 DSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVD 294 (317)
Q Consensus 216 ~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~ 294 (317)
......+.+..+++.+++.... .... ..||+||+||+++|||++.+|+++|||||++ ||+.+...+.+
T Consensus 116 ~~~~~~~~~~~~l~~~~l~~~~---~~~~--------~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~ 184 (264)
T PRK13546 116 KRKEIKAMTPKIIEFSELGEFI---YQPV--------KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLD 184 (264)
T ss_pred CHHHHHHHHHHHHHHcCCchhh---cCCc--------ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHH
Confidence 1122223345566666663221 2233 6899999999999999999999999999999 99999999999
Q ss_pred HHHHHHHh------cCCCcchhhcccCCC
Q 021147 295 MLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 295 ~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
.+.++.+. ..|++..+...+|+|
T Consensus 185 ~L~~~~~~g~tiIiisH~~~~i~~~~d~i 213 (264)
T PRK13546 185 KIYEFKEQNKTIFFVSHNLGQVRQFCTKI 213 (264)
T ss_pred HHHHHHHCCCEEEEEcCCHHHHHHHcCEE
Confidence 99987532 445566666666653
No 326
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.97 E-value=6.8e-31 Score=261.12 Aligned_cols=185 Identities=19% Similarity=0.195 Sum_probs=141.0
Q ss_pred CCceEEEeEEEEcCCCC--ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccC
Q 021147 69 GSLTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~--~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~ 146 (317)
.++++++||++.|+++. .+ |+++||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 19 ~~mL~lknL~~~~~~~~~~~I-----L~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~-----P~sGeI~I~G~~~ 88 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYA-----LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM-----PNKGTVDIKGSAA 88 (549)
T ss_pred cceeEEEEEEEecCCCccceE-----EeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCceEEEECCEee
Confidence 35799999999997642 23 999999999999999999999999999999999999 9999999998641
Q ss_pred ceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQ 225 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~ 225 (317)
. +++. +. +...+|+++|+.+...... ......+++.
T Consensus 89 ~---------------------------------------i~~~---~~-l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~ 125 (549)
T PRK13545 89 L---------------------------------------IAIS---SG-LNGQLTGIENIELKGLMMGLTKEKIKEIIP 125 (549)
T ss_pred e---------------------------------------EEec---cc-cCCCCcHHHHHHhhhhhcCCCHHHHHHHHH
Confidence 0 1110 00 1123588999876432211 1222334456
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++++.+++.... .... ..|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 126 elLe~lgL~~~l---d~~~--------~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~ 194 (549)
T PRK13545 126 EIIEFADIGKFI---YQPV--------KTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGK 194 (549)
T ss_pred HHHHHcCChhHh---hCCc--------ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCC
Confidence 778888874221 2333 6899999999999999999999999999999 9999999999999987532
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...||++
T Consensus 195 TIIIVSHdl~~i~~l~DrI 213 (549)
T PRK13545 195 TIFFISHSLSQVKSFCTKA 213 (549)
T ss_pred EEEEEECCHHHHHHhCCEE
Confidence 466777777777764
No 327
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=4.3e-31 Score=269.30 Aligned_cols=179 Identities=17% Similarity=0.253 Sum_probs=144.1
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++|+++.|++. . |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++ ..
T Consensus 338 ~~~l~~~~ls~~~~~~--~-----l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~-----p~~G~I~~~---~~- 401 (590)
T PRK13409 338 ETLVEYPDLTKKLGDF--S-----LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK-----PDEGEVDPE---LK- 401 (590)
T ss_pred ceEEEEcceEEEECCE--E-----EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEEe---ee-
Confidence 3579999999999642 3 999999999999999999999999999999999999 999999853 11
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
++|+||++.+ ...+||.+|+.+...... ....+.+++
T Consensus 402 --------------------------------------i~y~~Q~~~~-~~~~tv~e~l~~~~~~~~----~~~~~~~~L 438 (590)
T PRK13409 402 --------------------------------------ISYKPQYIKP-DYDGTVEDLLRSITDDLG----SSYYKSEII 438 (590)
T ss_pred --------------------------------------EEEecccccC-CCCCcHHHHHHHHhhhcC----hHHHHHHHH
Confidence 7777777653 345789999876421111 112356788
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++.... ...+ .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.++|+++.++
T Consensus 439 ~~l~l~~~~---~~~~--------~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv 507 (590)
T PRK13409 439 KPLQLERLL---DKNV--------KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATA 507 (590)
T ss_pred HHCCCHHHH---hCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 888874221 3344 7999999999999999999999999999999 9999999999999998653
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|||
T Consensus 508 iivsHD~~~~~~~aDrv 524 (590)
T PRK13409 508 LVVDHDIYMIDYISDRL 524 (590)
T ss_pred EEEeCCHHHHHHhCCEE
Confidence 567777787788874
No 328
>PLN03211 ABC transporter G-25; Provisional
Probab=99.97 E-value=3.3e-31 Score=273.15 Aligned_cols=177 Identities=15% Similarity=0.149 Sum_probs=137.4
Q ss_pred EEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCc--CcEEEECcccCceeeE
Q 021147 74 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE--RAQVTYNSSVGDGTYF 151 (317)
Q Consensus 74 ~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~--~G~I~i~g~~~~~~~~ 151 (317)
++|+++.|+++. + |+|+|+++++||++||+||||||||||+++|+|+.+ |+ +|+|.+||++
T Consensus 71 ~~~l~~~~~~~~-i-----L~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~-----~~~~sG~I~inG~~------ 133 (659)
T PLN03211 71 ISDETRQIQERT-I-----LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ-----GNNFTGTILANNRK------ 133 (659)
T ss_pred cccccccCCCCe-e-----eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC-----CCceeEEEEECCEE------
Confidence 456677775433 3 999999999999999999999999999999999998 64 8999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc--CCC-C-hHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM--EGD-S-DVEKQYNQIV 227 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~--~~~-~-~~~~~~~~~~ 227 (317)
+. . ..++ ++||++|+..+++ .+||+||+.+.... +.. . +...+++.++
T Consensus 134 ----------------~~---~-~~~~-------~i~yv~Q~~~l~~-~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~ 185 (659)
T PLN03211 134 ----------------PT---K-QILK-------RTGFVTQDDILYP-HLTVRETLVFCSLLRLPKSLTKQEKILVAESV 185 (659)
T ss_pred ----------------Cc---h-hhcc-------ceEEECcccccCC-cCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 21 1 1222 3999999987554 57999999875422 211 1 2233456778
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
++.+++.. ..++.++... ...||||||||++|||+|+.+|++++|||||+ ||+.++..+.+.|+++.+
T Consensus 186 l~~lgL~~-----~~~t~vg~~~-~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~ 254 (659)
T PLN03211 186 ISELGLTK-----CENTIIGNSF-IRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ 254 (659)
T ss_pred HHHcCChh-----hcCceeCCCC-CCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Confidence 88888632 2233343321 16899999999999999999999999999999 999999999999999865
No 329
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=3.9e-31 Score=243.90 Aligned_cols=188 Identities=16% Similarity=0.213 Sum_probs=136.5
Q ss_pred EeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEE-----------ECc
Q 021147 75 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-----------YNS 143 (317)
Q Consensus 75 ~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~-----------i~g 143 (317)
.||+|+|+.+..+ |+|+|+ +.+|++++|+||||||||||+|+|+|+++ |++|+|+ ++|
T Consensus 4 ~~~~~~y~~~~~~-----l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~-----p~~G~I~~~~~~~~~~~~~~g 72 (255)
T cd03236 4 DEPVHRYGPNSFK-----LHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLK-----PNLGKFDDPPDWDEILDEFRG 72 (255)
T ss_pred cCcceeecCcchh-----hhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEeeccccchhhhhccC
Confidence 3789999755434 999995 99999999999999999999999999999 9999997 333
Q ss_pred ccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHH
Q 021147 144 SVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQY 223 (317)
Q Consensus 144 ~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~ 223 (317)
++ +........+. ...+++++|....++ .++.+++..... .......
T Consensus 73 ~~----------------------~~~~~~~~~~~-----~~~i~~~~~~~~~~~--~~~~~~i~~~l~----~~~~~~~ 119 (255)
T cd03236 73 SE----------------------LQNYFTKLLEG-----DVKVIVKPQYVDLIP--KAVKGKVGELLK----KKDERGK 119 (255)
T ss_pred ch----------------------hhhhhHHhhhc-----ccceeeecchhccCc--hHHHHHHHHHhc----hhHHHHH
Confidence 32 21111111111 112678888765554 256666654211 1223355
Q ss_pred HHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 224 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 224 ~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
+.++++.+++.... +... ..||+||+||+++||+++.+|+++||||||+ ||+.++..+.+.++++.+.
T Consensus 120 ~~~~l~~~gl~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~ 188 (255)
T cd03236 120 LDELVDQLELRHVL---DRNI--------DQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAED 188 (255)
T ss_pred HHHHHHHcCCchhh---cCCh--------hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc
Confidence 77888888874211 2222 6899999999999999999999999999999 9999999999999988643
Q ss_pred ------cCCCcchhhcccCCC
Q 021147 303 ------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ------~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|+|
T Consensus 189 ~~tIIiiSHd~~~~~~~ad~i 209 (255)
T cd03236 189 DNYVLVVEHDLAVLDYLSDYI 209 (255)
T ss_pred CCEEEEEECCHHHHHHhCCEE
Confidence 446666666667764
No 330
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=6.8e-31 Score=270.42 Aligned_cols=186 Identities=16% Similarity=0.134 Sum_probs=143.3
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++||++.|++. .+ |+++||+|.+|+++||+||||||||||+|+|+|+++ |++|+|.+ |....
T Consensus 318 ~~l~~~~l~~~~~~~-~i-----l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-----p~~G~i~~-~~~~~-- 383 (635)
T PRK11147 318 IVFEMENVNYQIDGK-QL-----VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ-----ADSGRIHC-GTKLE-- 383 (635)
T ss_pred ceEEEeeeEEEECCe-EE-----EcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEE-CCCcE--
Confidence 479999999999754 34 999999999999999999999999999999999999 99999998 43311
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
|||++|++..+...+||.+|+.+...... ......++..++.
T Consensus 384 -------------------------------------i~y~~q~~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~l~ 425 (635)
T PRK11147 384 -------------------------------------VAYFDQHRAELDPEKTVMDNLAEGKQEVM-VNGRPRHVLGYLQ 425 (635)
T ss_pred -------------------------------------EEEEeCcccccCCCCCHHHHHHhhccccc-ccchHHHHHHHHH
Confidence 77777765434456788999876432111 0111334566777
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH---HhcCC
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL---EHADR 305 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~---~~~~~ 305 (317)
.+++.... ...++ ..||||||||+++||+++.+|+++||||||+ ||+.+...+.++++++. -...|
T Consensus 426 ~~~l~~~~--~~~~~--------~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSH 495 (635)
T PRK11147 426 DFLFHPKR--AMTPV--------KALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSH 495 (635)
T ss_pred hcCCCHHH--HhChh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEEC
Confidence 77763111 13344 7999999999999999999999999999999 99999999999998851 12566
Q ss_pred CcchhhcccCCC
Q 021147 306 NLSCKSCARNKV 317 (317)
Q Consensus 306 ~~~~~~~~~~~~ 317 (317)
+...+..++|++
T Consensus 496 d~~~~~~~~d~i 507 (635)
T PRK11147 496 DRQFVDNTVTEC 507 (635)
T ss_pred CHHHHHHhcCEE
Confidence 777777777764
No 331
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.1e-30 Score=234.62 Aligned_cols=182 Identities=19% Similarity=0.212 Sum_probs=145.3
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+++|+++||+++|+++. + |+|||++|++||..+|+||||||||||+++++|.++ |++|.+.+.|+...
T Consensus 29 ~~li~l~~v~v~r~gk~-i-----L~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~-----pssg~~~~~G~~~G- 96 (257)
T COG1119 29 EPLIELKNVSVRRNGKK-I-----LGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP-----PSSGDVTLLGRRFG- 96 (257)
T ss_pred cceEEecceEEEECCEe-e-----ccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC-----CCCCceeeeeeecc-
Confidence 45799999999998764 4 999999999999999999999999999999999999 99999999998622
Q ss_pred eeEecccCCCCcccccceeeccCCh-HHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhh--h---ccC-CCChHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDS-SSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVL--K---SME-GDSDVE 220 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~--~---~~~-~~~~~~ 220 (317)
..+. .++|++ ||+|+.... .|....+++|-+.-+ . .|. ......
T Consensus 97 ---------------------~~~~~~elrk~-------IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~ 148 (257)
T COG1119 97 ---------------------KGETIFELRKR-------IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAED 148 (257)
T ss_pred ---------------------CCcchHHHHHH-------hCccCHHHHhhcccccccceeeeecccccccccccCCCHHH
Confidence 2222 677877 999976433 344444566655311 1 122 333456
Q ss_pred HHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 221 KQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 221 ~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
..++..+++.+++.... +.+. ..||-||+||+-||||++.+|.++|||||++ ||...+..+.+.+.++
T Consensus 149 ~~~a~~lle~~g~~~la---~r~~--------~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~ 217 (257)
T COG1119 149 LAAAQWLLELLGAKHLA---DRPF--------GSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEEL 217 (257)
T ss_pred HHHHHHHHHHcchhhhc---cCch--------hhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHH
Confidence 67778889999874332 4555 7999999999999999999999999999999 9999999999999987
Q ss_pred HH
Q 021147 300 LE 301 (317)
Q Consensus 300 ~~ 301 (317)
..
T Consensus 218 ~~ 219 (257)
T COG1119 218 AA 219 (257)
T ss_pred hc
Confidence 53
No 332
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=1.9e-30 Score=224.09 Aligned_cols=189 Identities=16% Similarity=0.150 Sum_probs=140.4
Q ss_pred CCceEEEeEEEEcCCCCcc---ccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 69 GSLTDAKNKILSYTPGAWI---ENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~---~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
++.++++|++++|...... ..+.|++.|||++.+|+++||||.||||||||+|+|+|+++ |++|+|++||+.
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~-----PTsG~il~n~~~ 76 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-----PTSGEILINDHP 76 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC-----CCCceEEECCcc
Confidence 4678999999988533111 12345999999999999999999999999999999999999 999999999986
Q ss_pred CceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhccCC--CChHHHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSMEG--DSDVEKQ 222 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~~~--~~~~~~~ 222 (317)
+.-.+-....++ |-++||+|. -|++.+.+-+-+........ +.+...+
T Consensus 77 ----------------------L~~~Dy~~R~k~-------IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~ 127 (267)
T COG4167 77 ----------------------LHFGDYSFRSKR-------IRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRK 127 (267)
T ss_pred ----------------------ccccchHhhhhh-------eeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHH
Confidence 211222222222 777777775 34444433333332222222 2234567
Q ss_pred HHHHHHHHcCC-CcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNC-PYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 223 ~~~~~a~~~~l-~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
++.+.++.+|+ |... ++.. ..||-|||||+++||||..+|+++|.||+-. ||...+..+.+++.++-
T Consensus 128 ~i~~TL~~VGL~Pdha---n~~~--------~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQ 196 (267)
T COG4167 128 QIFETLRMVGLLPDHA---NYYP--------HMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQ 196 (267)
T ss_pred HHHHHHHHhccCcccc---ccch--------hhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHH
Confidence 78888999998 3222 3444 6899999999999999999999999999999 99999999999988875
Q ss_pred Hh
Q 021147 301 EH 302 (317)
Q Consensus 301 ~~ 302 (317)
+.
T Consensus 197 ek 198 (267)
T COG4167 197 EK 198 (267)
T ss_pred HH
Confidence 44
No 333
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.97 E-value=1.6e-30 Score=219.96 Aligned_cols=133 Identities=23% Similarity=0.291 Sum_probs=114.8
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++|+++.|++. .+ ++++||++++||+++|+|+||||||||+++|+|+++ |++|+|+++|+.
T Consensus 1 l~~~~l~~~~~~~-~~-----l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~~~~------ 63 (144)
T cd03221 1 IELENLSKTYGGK-LL-----LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE-----PDEGIVTWGSTV------ 63 (144)
T ss_pred CEEEEEEEEECCc-eE-----EEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCceEEEECCeE------
Confidence 5789999999754 34 999999999999999999999999999999999999 999999987731
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHc
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF 231 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~ 231 (317)
.++|++|
T Consensus 64 ----------------------------------~i~~~~~--------------------------------------- 70 (144)
T cd03221 64 ----------------------------------KIGYFEQ--------------------------------------- 70 (144)
T ss_pred ----------------------------------EEEEEcc---------------------------------------
Confidence 1777665
Q ss_pred CCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH---hcCCCc
Q 021147 232 NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE---HADRNL 307 (317)
Q Consensus 232 ~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~---~~~~~~ 307 (317)
||+||+||+++|||++.+|+++|||||++ ||+.++..+.+.++++.. ...|++
T Consensus 71 -----------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~ 127 (144)
T cd03221 71 -----------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDR 127 (144)
T ss_pred -----------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCH
Confidence 89999999999999999999999999999 999999999999988622 245566
Q ss_pred chhhcccCCC
Q 021147 308 SCKSCARNKV 317 (317)
Q Consensus 308 ~~~~~~~~~~ 317 (317)
..+.+.+|++
T Consensus 128 ~~~~~~~d~v 137 (144)
T cd03221 128 YFLDQVATKI 137 (144)
T ss_pred HHHHHhCCEE
Confidence 6666666653
No 334
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.96 E-value=7.7e-30 Score=242.17 Aligned_cols=214 Identities=18% Similarity=0.188 Sum_probs=162.3
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
+++.|+++|++..|..... .+.++++|||+|++||++||||+||||||-.++.|+||++......-+|+|.++|.+
T Consensus 3 ~~~lL~v~nLsV~f~~~~~--~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~d-- 78 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGG--TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGED-- 78 (534)
T ss_pred CCcceeeeccEEEEecCCc--ceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChh--
Confidence 3578999999999953221 123499999999999999999999999999999999999855444568999999987
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhcc--CCCChHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSM--EGDSDVEKQYN 224 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~--~~~~~~~~~~~ 224 (317)
+-..+.+.++.- .=.+|+++||+|- -+++-.|+...+.-.-.. .-......+++
T Consensus 79 --------------------ll~~se~~lr~i---RG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~ 135 (534)
T COG4172 79 --------------------LLAASERQLRGV---RGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARA 135 (534)
T ss_pred --------------------hhcCCHHHHhhh---cccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 333443333321 0123888888874 344445665555422211 12234556778
Q ss_pred HHHHHHcCCCc-ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 225 QIVATTFNCPY-LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 225 ~~~a~~~~l~~-~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
.++++.+|++. ...-+.|+ .+||||||||+.||.||+.+|++||.||||. ||...+..|.++|+++.+.
T Consensus 136 lelL~~VgI~~p~~rl~~yP---------HeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~ 206 (534)
T COG4172 136 LELLELVGIPEPEKRLDAYP---------HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAE 206 (534)
T ss_pred HHHHHHcCCCchhhhhhhCC---------cccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHH
Confidence 88999999962 22334688 5999999999999999999999999999999 9999999999999998654
Q ss_pred -------cCCCcchhhcccCCC
Q 021147 303 -------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -------~~~~~~~~~~~~~~~ 317 (317)
-.|++..+...+|||
T Consensus 207 ~gMa~lfITHDL~iVr~~ADrV 228 (534)
T COG4172 207 LGMAILFITHDLGIVRKFADRV 228 (534)
T ss_pred hCcEEEEEeccHHHHHHhhhhE
Confidence 467888999999886
No 335
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5.5e-30 Score=263.71 Aligned_cols=182 Identities=13% Similarity=0.098 Sum_probs=136.8
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
..+|+++||++.|++. .+ |+|+||+|.+|+++||+||||||||||+|+|+|+++ |++|+|.+++. ..
T Consensus 310 ~~~l~~~~l~~~y~~~-~i-----l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~-~~- 376 (638)
T PRK10636 310 NPLLKMEKVSAGYGDR-II-----LDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA-----PVSGEIGLAKG-IK- 376 (638)
T ss_pred CceEEEEeeEEEeCCe-ee-----eccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCC-EE-
Confidence 3479999999999754 34 999999999999999999999999999999999999 99999998642 23
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhccCCCChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~ 227 (317)
+||++|+.. .+....++.+++.... . .....++..+
T Consensus 377 --------------------------------------igy~~Q~~~~~l~~~~~~~~~~~~~~---~--~~~~~~~~~~ 413 (638)
T PRK10636 377 --------------------------------------LGYFAQHQLEFLRADESPLQHLARLA---P--QELEQKLRDY 413 (638)
T ss_pred --------------------------------------EEEecCcchhhCCccchHHHHHHHhC---c--hhhHHHHHHH
Confidence 444444321 1112234444442110 1 1123456778
Q ss_pred HHHcCCCc-ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH---h
Q 021147 228 ATTFNCPY-LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE---H 302 (317)
Q Consensus 228 a~~~~l~~-~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~---~ 302 (317)
+..+++.. .. ..++ ..||||||||++|||+++.+|+++||||||+ ||+.+...+.++|.++.. .
T Consensus 414 L~~~~l~~~~~---~~~~--------~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~ 482 (638)
T PRK10636 414 LGGFGFQGDKV---TEET--------RRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVV 482 (638)
T ss_pred HHHcCCChhHh---cCch--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 88888631 11 3344 7999999999999999999999999999999 999999999999988621 2
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|+...+..++|||
T Consensus 483 vSHd~~~~~~~~d~i 497 (638)
T PRK10636 483 VSHDRHLLRSTTDDL 497 (638)
T ss_pred EeCCHHHHHHhCCEE
Confidence 566777777777764
No 336
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.1e-30 Score=237.99 Aligned_cols=164 Identities=20% Similarity=0.207 Sum_probs=133.4
Q ss_pred eeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCCh
Q 021147 94 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDS 173 (317)
Q Consensus 94 ~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~ 173 (317)
=+++|+++.--++||-|+||||||||+|+|+|+.. |+.|.|.+||.-. +-+. ++...
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r-----PdeG~I~lngr~L----~Ds~--------------k~i~l 71 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTR-----PDEGRIELNGRVL----VDAE--------------KGIFL 71 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCC-----ccccEEEECCEEe----eccc--------------CCccc
Confidence 36899999978999999999999999999999999 9999999999741 0000 11111
Q ss_pred HHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchh
Q 021147 174 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLL 253 (317)
Q Consensus 174 ~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~ 253 (317)
..-+++ |||||||..+|+ .+||+.|+.|+.... ...+..++...+|+.. +-+.|+ .
T Consensus 72 p~~~Rr-------iGYVFQDARLFp-H~tVrgNL~YG~~~~-----~~~~fd~iv~lLGI~h--LL~R~P---------~ 127 (352)
T COG4148 72 PPEKRR-------IGYVFQDARLFP-HYTVRGNLRYGMWKS-----MRAQFDQLVALLGIEH--LLDRYP---------G 127 (352)
T ss_pred Chhhhe-------eeeEeecccccc-ceEEecchhhhhccc-----chHhHHHHHHHhCcHH--HHhhCC---------C
Confidence 122333 999999998886 799999999986543 2344788889999832 223677 5
Q ss_pred cCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHhcC
Q 021147 254 SLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEHAD 304 (317)
Q Consensus 254 ~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~~~ 304 (317)
+||||||||++|||||...|.++++|||.+ ||...+++++..++++.+..+
T Consensus 128 ~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~ 179 (352)
T COG4148 128 TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEIN 179 (352)
T ss_pred ccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999 999999999999999977643
No 337
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.96 E-value=3.2e-30 Score=214.44 Aligned_cols=136 Identities=21% Similarity=0.281 Sum_probs=109.4
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
|+||||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+ +...+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~-----~~~G~i~~~~~~----------------------~~~~~ 53 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP-----PDSGSILINGKD----------------------ISDID 53 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH-----ESEEEEEETTEE----------------------GTTSH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc-----cccccccccccc----------------------ccccc
Confidence 689999999999999999999999999999999999 999999999986 44444
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCc-ccCCCCCCEEEEeccc
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPY-LSFRDDKPVVVVTHGD 251 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~l~~~~~~~i~~hg~ 251 (317)
....++. ++|++|+..++. ..|+.+| ....++.++++.+++.. ....-+...
T Consensus 54 ~~~~~~~-------i~~~~~~~~~~~-~~tv~~~------------~~~~~~~~~l~~l~~~~~~~~~~~~~~------- 106 (137)
T PF00005_consen 54 IEELRRR-------IGYVPQDPQLFP-GLTVREN------------ESDERIEEVLKKLGLEDLLDRKIGQRA------- 106 (137)
T ss_dssp HHHHHHT-------EEEEESSHCHHT-TSBHHHH------------HHHHHHHHHHHHTTHGGGTGSBGTSCG-------
T ss_pred ccccccc-------cccccccccccc-ccccccc------------ccccccccccccccccccccccccccc-------
Confidence 4455555 999999976555 4668887 23345777888877632 111112222
Q ss_pred hhcCcHHHHHhhcccceeccccceeeccCCCC
Q 021147 252 LLSLTDRARIRTYLGELLGIPPAKQIFDIPES 283 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~~~p~ilIlDEPts 283 (317)
..||+||+||+++|||++.+|+++||||||+
T Consensus 107 -~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 107 -SSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -GGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -chhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 7999999999999999999999999999996
No 338
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=9.9e-30 Score=261.82 Aligned_cols=199 Identities=12% Similarity=0.093 Sum_probs=140.3
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||+++|++.. + |+||||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.. .++|
T Consensus 1 ~i~i~nls~~~g~~~-~-----l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~-----pd~G~I~~~~~~-~i~~ 68 (638)
T PRK10636 1 MIVFSSLQIRRGVRV-L-----LDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS-----ADGGSYTFPGNW-QLAW 68 (638)
T ss_pred CEEEEEEEEEeCCce-e-----ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCCC-EEEE
Confidence 589999999997653 4 999999999999999999999999999999999999 999999999863 5788
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHH-------H-HHhh---hcc-CCCCh
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVD-------G-LAVL---KSM-EGDSD 218 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~e-------n-i~~~---~~~-~~~~~ 218 (317)
++|+...+.. + . +++++|....+. .++... + ..+. ... .....
T Consensus 69 ~~q~~~~~~~-~----------------~-------~~~v~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (638)
T PRK10636 69 VNQETPALPQ-P----------------A-------LEYVIDGDREYR-QLEAQLHDANERNDGHAIATIHGKLDAIDAW 123 (638)
T ss_pred EecCCCCCCC-C----------------H-------HHHHHHhhHHHH-HHHHHHHHHhccCCHHHHHHHHHHHHhcCCc
Confidence 8885322110 0 0 223322211110 001000 0 0000 000 00011
Q ss_pred HHHHHHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHH
Q 021147 219 VEKQYNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDML 296 (317)
Q Consensus 219 ~~~~~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l 296 (317)
....++..+++.+++. ... ..++ .+|||||+||++|||||+.+|+++||||||+ ||+.+...+.+.|
T Consensus 124 ~~~~~~~~~L~~lgl~~~~~---~~~~--------~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L 192 (638)
T PRK10636 124 TIRSRAASLLHGLGFSNEQL---ERPV--------SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWL 192 (638)
T ss_pred chHHHHHHHHHhCCCCchhh---cCch--------hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHH
Confidence 2234577888888873 111 3444 7999999999999999999999999999999 9999999999998
Q ss_pred HHHHH---hcCCCcchhhcccCCC
Q 021147 297 RYCLE---HADRNLSCKSCARNKV 317 (317)
Q Consensus 297 ~~l~~---~~~~~~~~~~~~~~~~ 317 (317)
+++.. ...|+..++..++|+|
T Consensus 193 ~~~~~tviivsHd~~~l~~~~d~i 216 (638)
T PRK10636 193 KSYQGTLILISHDRDFLDPIVDKI 216 (638)
T ss_pred HhCCCeEEEEeCCHHHHHHhcCEE
Confidence 87521 3567777777777764
No 339
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=5.5e-30 Score=224.05 Aligned_cols=131 Identities=17% Similarity=0.229 Sum_probs=111.5
Q ss_pred EeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecc
Q 021147 75 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQE 154 (317)
Q Consensus 75 ~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~ 154 (317)
.||++.|++. .+ +++ +|+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 4 ~~l~~~~~~~-~~-----l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~--------- 62 (177)
T cd03222 4 PDCVKRYGVF-FL-----LVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLI-----PNGDNDEWDGIT--------- 62 (177)
T ss_pred CCeEEEECCE-EE-----Ecc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCcEEEECCEE---------
Confidence 5899999764 33 777 49999999999999999999999999999999 999999988853
Q ss_pred cCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC
Q 021147 155 YTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP 234 (317)
Q Consensus 155 ~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~ 234 (317)
++|++|++.
T Consensus 63 --------------------------------i~~~~q~~~--------------------------------------- 71 (177)
T cd03222 63 --------------------------------PVYKPQYID--------------------------------------- 71 (177)
T ss_pred --------------------------------EEEEcccCC---------------------------------------
Confidence 666666320
Q ss_pred cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------cCCC
Q 021147 235 YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-------ADRN 306 (317)
Q Consensus 235 ~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-------~~~~ 306 (317)
||+||+||+++|||++.+|++++|||||+ ||+.++..+.+.++++.+. ..|+
T Consensus 72 --------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~ 131 (177)
T cd03222 72 --------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131 (177)
T ss_pred --------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 89999999999999999999999999999 9999999999999987543 4455
Q ss_pred cchhhcccCCC
Q 021147 307 LSCKSCARNKV 317 (317)
Q Consensus 307 ~~~~~~~~~~~ 317 (317)
+..+...+|++
T Consensus 132 ~~~~~~~~d~i 142 (177)
T cd03222 132 LAVLDYLSDRI 142 (177)
T ss_pred HHHHHHhCCEE
Confidence 66666666653
No 340
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=1.5e-29 Score=220.37 Aligned_cols=197 Identities=15% Similarity=0.165 Sum_probs=157.5
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECc-ccCce
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS-SVGDG 148 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g-~~~~~ 148 (317)
..++++||+.+|++-+. |+++||+|.+||.-+|||||||||||++..|+|--+ |+.|+++++| .+
T Consensus 4 ~iL~~~~vsVsF~GF~A------ln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr-----p~~G~v~f~g~~d--- 69 (249)
T COG4674 4 IILYLDGVSVSFGGFKA------LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR-----PQEGEVLFDGDTD--- 69 (249)
T ss_pred ceEEEeceEEEEcceee------eeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC-----CCcceEEEcCchh---
Confidence 46899999999987543 999999999999999999999999999999999999 9999999999 44
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc---------CCCChH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM---------EGDSDV 219 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~---------~~~~~~ 219 (317)
+..++...+.+. .||--||.|..|. .+||+||+.+.... ......
T Consensus 70 -------------------l~~~~e~~IAr~------GIGRKFQ~PtVfe-~ltV~eNLelA~~~~k~v~a~L~~r~~~~ 123 (249)
T COG4674 70 -------------------LTKLPEHRIARA------GIGRKFQKPTVFE-NLTVRENLELALNRDKSVFASLFARLRAE 123 (249)
T ss_pred -------------------hccCCHHHHHHh------ccCccccCCeehh-hccHHHHHHHHhcCCcchHHHhhhhcChh
Confidence 556665444433 3888899998666 68999999875321 122344
Q ss_pred HHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 220 EKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 220 ~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
.+.++.+++...++.... +.. |..||.||||++.||..++.+|+++++|||++ +-.......-++++.
T Consensus 124 e~~ride~La~igL~~~~---~~~--------A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~ 192 (249)
T COG4674 124 ERRRIDELLATIGLGDER---DRL--------AALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKS 192 (249)
T ss_pred HHHHHHHHHHHcccchhh---hhh--------hhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHH
Confidence 556788889888873222 222 37899999999999999999999999999999 866666777888888
Q ss_pred HHHh-----cCCCcchhhcccCCC
Q 021147 299 CLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 299 l~~~-----~~~~~~~~~~~~~~~ 317 (317)
+... -+|+..++..+++||
T Consensus 193 la~~hsilVVEHDM~Fvr~~A~~V 216 (249)
T COG4674 193 LAGKHSILVVEHDMGFVREIADKV 216 (249)
T ss_pred HhcCceEEEEeccHHHHHHhhhee
Confidence 7642 567788888887775
No 341
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.7e-29 Score=217.55 Aligned_cols=174 Identities=16% Similarity=0.205 Sum_probs=137.4
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+++.+|++..-++... +.++||++.+||.+-|.||||||||||+|+|+|+.+ |++|+|+++|..
T Consensus 2 ~L~a~~L~~~R~e~~l------f~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~-----p~~G~v~~~~~~----- 65 (209)
T COG4133 2 MLEAENLSCERGERTL------FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR-----PDAGEVYWQGEP----- 65 (209)
T ss_pred cchhhhhhhccCccee------ecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC-----CCCCeEEecCCC-----
Confidence 5778888877765533 999999999999999999999999999999999999 999999999875
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhcccc-ccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE-PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v-~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
+. ..++..++. +-|+ .|.. +-..+|++||+.|....... .....+.+++.
T Consensus 66 -----------------i~-~~~~~~~~~-------l~yLGH~~g--iK~eLTa~ENL~F~~~~~~~--~~~~~i~~Al~ 116 (209)
T COG4133 66 -----------------IQ-NVRESYHQA-------LLYLGHQPG--IKTELTALENLHFWQRFHGS--GNAATIWEALA 116 (209)
T ss_pred -----------------Cc-cchhhHHHH-------HHHhhcccc--ccchhhHHHHHHHHHHHhCC--CchhhHHHHHH
Confidence 21 122233444 3333 2322 33357999999998754332 23345889999
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
.+++.-.. +.++ .+||-||++|+++||.+++.++++|||||++ ||..+...+...+...+
T Consensus 117 ~vgL~g~~---dlp~--------~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~ 177 (209)
T COG4133 117 QVGLAGLE---DLPV--------GQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHA 177 (209)
T ss_pred HcCccccc---ccch--------hhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHh
Confidence 99984222 4666 8999999999999999999999999999999 99999999988887643
No 342
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=1.6e-29 Score=271.65 Aligned_cols=208 Identities=17% Similarity=0.104 Sum_probs=173.6
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc--------CCCCceEEEeEEEEcCCCCccccccCceeeeeEec
Q 021147 30 LSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT--------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVP 101 (317)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~ 101 (317)
++.|....-.....+.++..+.+|+.+++..+..... .....++++|.+|+....... ..|+||||+|+
T Consensus 469 Lr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~---~tL~dIn~~i~ 545 (1381)
T KOG0054|consen 469 LRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPE---PTLKDINFEIK 545 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEEEeeeeEecCCCCCc---ccccceeEEec
Confidence 4455555556677788899999999999875432211 223469999999998652211 12999999999
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHH
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMR 181 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~ 181 (317)
+|+.+||||+-|||||+|+.+|.|-.+ ..+|+|.++|.
T Consensus 546 ~G~lvaVvG~vGsGKSSLL~AiLGEm~-----~~sG~v~v~gs------------------------------------- 583 (1381)
T KOG0054|consen 546 KGQLVAVVGPVGSGKSSLLSAILGEMP-----KLSGSVAVNGS------------------------------------- 583 (1381)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcc-----cccceEEEcCe-------------------------------------
Confidence 999999999999999999999999999 99999999885
Q ss_pred HhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCC--CcccCCCCCCEEEEeccchhcCcHHH
Q 021147 182 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNC--PYLSFRDDKPVVVVTHGDLLSLTDRA 259 (317)
Q Consensus 182 ~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l--~~~~l~~~~~~~i~~hg~~~~LSgG~ 259 (317)
++|+||.|.++++ ||+|||.|+.++. .++-.++++++++ +...+|.|-.|.|||+| .+|||||
T Consensus 584 -----iaYv~Q~pWI~ng--TvreNILFG~~~d------~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErG--inLSGGQ 648 (1381)
T KOG0054|consen 584 -----VAYVPQQPWIQNG--TVRENILFGSPYD------EERYDKVIKACALKKDLEILPFGDLTEIGERG--INLSGGQ 648 (1381)
T ss_pred -----EEEeccccHhhCC--cHHHhhhcCcccc------HHHHHHHHHHccCHhHHhhcCCCCcceecCCc--cCCcHhH
Confidence 8999999988876 9999999987643 3346778888888 35568889999999999 9999999
Q ss_pred HHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHH
Q 021147 260 RIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLR 297 (317)
Q Consensus 260 ~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~ 297 (317)
||||++|||++++.++.+||+|.| +|..+-+.+.+..-
T Consensus 649 KqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci 687 (1381)
T KOG0054|consen 649 KQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECI 687 (1381)
T ss_pred HHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHH
Confidence 999999999999999999999999 99999998877543
No 343
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.96 E-value=2.2e-29 Score=259.28 Aligned_cols=213 Identities=15% Similarity=0.126 Sum_probs=140.3
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|.+|+++||+++|++. .+ |+||||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|. ..+
T Consensus 1 m~~l~i~~ls~~~~~~-~i-----l~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~-----p~~G~I~~~~~-~~~ 68 (635)
T PRK11147 1 MSLISIHGAWLSFSDA-PL-----LDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL-----LDDGRIIYEQD-LIV 68 (635)
T ss_pred CcEEEEeeEEEEeCCc-ee-----EeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCeEEEeCCC-CEE
Confidence 3479999999999754 34 999999999999999999999999999999999999 99999999874 346
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccc-cccccccccchhhHHHHHHhhh----ccC-CCChHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGC-EPSVIRKVNFVIFVVDGLAVLK----SME-GDSDVEKQ 222 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~-v~Q~~~~~~~~~tv~eni~~~~----~~~-~~~~~~~~ 222 (317)
++++|.+.......+-+...... ..+.... ..+..+.. +.++ +..+|+.... ... ........
T Consensus 69 ~~l~q~~~~~~~~~v~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~ 137 (635)
T PRK11147 69 ARLQQDPPRNVEGTVYDFVAEGI--EEQAEYL-KRYHDISHLVETD--------PSEKNLNELAKLQEQLDHHNLWQLEN 137 (635)
T ss_pred EEeccCCCCCCCCCHHHHHHHhh--HHHHHHH-HHHHHHHHHhccC--------chHHHHHHHHHHHHHHHhcCcccHHH
Confidence 77777532110000000000000 0000000 00000000 0000 1122332110 000 00112234
Q ss_pred HHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 223 ~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
++.++++.+++. ...++ .+|||||+||++|||||+.+|+++||||||+ ||+.+...+.+.|+++..
T Consensus 138 ~~~~~l~~lgl~-----~~~~~--------~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~ 204 (635)
T PRK11147 138 RINEVLAQLGLD-----PDAAL--------SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQG 204 (635)
T ss_pred HHHHHHHhCCCC-----CCCch--------hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCC
Confidence 577888888863 13444 7999999999999999999999999999999 999999999999988631
Q ss_pred ---hcCCCcchhhcccCCC
Q 021147 302 ---HADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ---~~~~~~~~~~~~~~~~ 317 (317)
...|+..++..++|+|
T Consensus 205 tvlivsHd~~~l~~~~d~i 223 (635)
T PRK11147 205 SIIFISHDRSFIRNMATRI 223 (635)
T ss_pred EEEEEeCCHHHHHHhcCeE
Confidence 2567777777777764
No 344
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.96 E-value=2.6e-29 Score=276.72 Aligned_cols=183 Identities=20% Similarity=0.166 Sum_probs=144.1
Q ss_pred ceEEEeEEEEcCC---CCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 71 LTDAKNKILSYTP---GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 71 ~I~~~nls~~y~~---~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
+++++||++.|+. .+.+ |+|||++|++|+++||+||||||||||+++|+|+.++. .|++|+|++||++
T Consensus 759 ~l~~~nl~~~~~~~~~~~~i-----L~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g--~~~~G~I~i~G~~-- 829 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVI-----LNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTG--VITGGDRLVNGRP-- 829 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEe-----eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC--CcceeEEEECCEE--
Confidence 5899999999952 2233 99999999999999999999999999999999998632 2678999999986
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc--CCCC--hHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM--EGDS--DVEKQY 223 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~--~~~~--~~~~~~ 223 (317)
+. ..+++. +||++|+..+ ...+||+||+.+.... +... ....++
T Consensus 830 --------------------~~----~~~~~~-------i~yv~Q~~~~-~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~ 877 (1394)
T TIGR00956 830 --------------------LD----SSFQRS-------IGYVQQQDLH-LPTSTVRESLRFSAYLRQPKSVSKSEKMEY 877 (1394)
T ss_pred --------------------CC----hhhhcc-------eeeecccccC-CCCCCHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 21 124444 9999998754 3468999999875422 2211 223456
Q ss_pred HHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccc-eeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 224 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPA-KQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 224 ~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~-ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
+.++++.+++.. ..+..+++.+ ..||||||||++||++|+.+|+ +++|||||+ ||+.+...+.+.|+++.+
T Consensus 878 v~~~l~~l~L~~-----~~d~~v~~~~--~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~ 950 (1394)
T TIGR00956 878 VEEVIKLLEMES-----YADAVVGVPG--EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD 950 (1394)
T ss_pred HHHHHHHcCChh-----hCCCeeCCCC--CCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 778889888632 2334445444 4799999999999999999997 999999999 999999999999999854
No 345
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.96 E-value=2.3e-29 Score=258.37 Aligned_cols=169 Identities=16% Similarity=0.127 Sum_probs=133.2
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
|+|+|+++++||+++|+||||||||||+++|+|..+++ ...+|+|.++|.+ + +
T Consensus 41 L~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~--~~~~G~i~~~g~~----------------------~---~ 93 (617)
T TIGR00955 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKG--VKGSGSVLLNGMP----------------------I---D 93 (617)
T ss_pred ccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC--CcceeEEEECCEE----------------------C---C
Confidence 99999999999999999999999999999999998721 0138999999975 2 2
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc--CCC--ChHHHHHHHHHHHHcCCCcccCCCCCCEEEEe
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM--EGD--SDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 248 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~--~~~--~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~ 248 (317)
...+++. +||++|++.++ ..+||+||+.+.... +.. .+...+++.++++.+++. +..++.+++
T Consensus 94 ~~~~~~~-------i~yv~Q~~~~~-~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-----~~~~t~vg~ 160 (617)
T TIGR00955 94 AKEMRAI-------SAYVQQDDLFI-PTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLR-----KCANTRIGV 160 (617)
T ss_pred HHHHhhh-------ceeeccccccC-ccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCch-----hcCcCccCC
Confidence 2344544 99999998655 468999999986532 221 123345677788888863 233455554
Q ss_pred ccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 249 HGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 249 hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.+....||||||||++|||+++.+|++++|||||+ ||+.+...+.+.++++.+
T Consensus 161 ~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~ 214 (617)
T TIGR00955 161 PGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ 214 (617)
T ss_pred CCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh
Confidence 22125799999999999999999999999999999 999999999999999864
No 346
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.8e-29 Score=215.70 Aligned_cols=192 Identities=16% Similarity=0.202 Sum_probs=135.8
Q ss_pred ceEEEeEEEEcCCCCc-cccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 71 LTDAKNKILSYTPGAW-IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~-~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.|.++||+|+|.-+.. -+.+.+|+++||+++.||++++-||||||||||+|+|+|-|. |++|+|++....-.
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~-----~d~G~I~v~H~g~~-- 76 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL-----PDEGQILVRHEGEW-- 76 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC-----CCCceEEEEeCcch--
Confidence 5899999999842211 012233999999999999999999999999999999999999 99999998654311
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhh-hccCCCChHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVL-KSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~-~~~~~~~~~~~~~~~~~a 228 (317)
+++-...+++. +.-..+.||||+|.....+. .+-.|-.+-. .......+....+...++
T Consensus 77 ----------------vdl~~a~pr~v---l~vRr~TiGyVSQFLRviPR-V~aLdVvaePll~~gv~~~~a~~~a~~Ll 136 (235)
T COG4778 77 ----------------VDLVTAEPREV---LEVRRTTIGYVSQFLRVIPR-VSALDVVAEPLLARGVPREVARAKAADLL 136 (235)
T ss_pred ----------------hhhhccChHHH---HHHHHhhhHHHHHHHHhccC-cchHHHHHhHHHHcCCCHHHHHHHHHHHH
Confidence 11222222211 11112349999996543332 1111222110 111222344566777889
Q ss_pred HHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 229 TTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 229 ~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
..+++| .+.++. ..+|||++||+.|||.++.+-++|+|||||+ ||..+++.+.++|.+.+.
T Consensus 137 ~rLnlperLW~LaP------------aTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka 200 (235)
T COG4778 137 TRLNLPERLWSLAP------------ATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKA 200 (235)
T ss_pred HHcCCCHHHhcCCC------------cccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHh
Confidence 999997 333322 5899999999999999999999999999999 999999999999998653
No 347
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=2.4e-29 Score=211.06 Aligned_cols=180 Identities=16% Similarity=0.121 Sum_probs=139.2
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.++.++||+.+.+++-. |-++||+|.+||++.|+||||||||||+.-+.|.+.++- ..+|++++++++
T Consensus 1 ~~l~l~nvsl~l~g~cL------La~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F--~~~G~~~l~~~~---- 68 (213)
T COG4136 1 GMLCLKNVSLRLPGSCL------LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQF--SCTGELWLNEQR---- 68 (213)
T ss_pred CceeeeeeeecCCCceE------EEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCc--ceeeEEEECCee----
Confidence 36889999999887654 999999999999999999999999999999999998432 348999999986
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
+..++. -+++ +|+++|++-+|+ .++|.+|+.|..+..-.-...++...++++
T Consensus 69 ------------------l~~lPa--~qRq-------~GiLFQD~lLFp-hlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~ 120 (213)
T COG4136 69 ------------------LDMLPA--AQRQ-------IGILFQDALLFP-HLSVGQNLLFALPATLKGNARRNAANAALE 120 (213)
T ss_pred ------------------ccccch--hhhh-------eeeeeccccccc-ccccccceEEecCcccccHHHHhhHHHHHH
Confidence 333332 2334 999999997665 789999998764322211222334556677
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
..++.-.- +..+ .+||||||-|+++-|+|+..|+.++||||+| ||..-+..+.+.+-.-.
T Consensus 121 ~~gL~g~f--~~dP---------~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~ 181 (213)
T COG4136 121 RSGLDGAF--HQDP---------ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEV 181 (213)
T ss_pred Hhccchhh--hcCh---------hhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHH
Confidence 77763211 1222 6899999999999999999999999999999 99998888888765433
No 348
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.96 E-value=2.7e-29 Score=225.62 Aligned_cols=164 Identities=12% Similarity=0.084 Sum_probs=118.5
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEE-ECcccCceeeEecccCCCCcccccceeeccC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-YNSSVGDGTYFLQEYTIPRGVRHGELVIRRS 171 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~-i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~ 171 (317)
|+||||+|++|++++|+||||||||||+|+|+|+++ |++|+|. ++|.. +
T Consensus 3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----~~sG~i~~~~~~~----------------------~--- 52 (213)
T PRK15177 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA-----PDEGDFIGLRGDA----------------------L--- 52 (213)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc-----CCCCCEEEecCce----------------------e---
Confidence 999999999999999999999999999999999999 9999997 66643 1
Q ss_pred ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccc
Q 021147 172 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGD 251 (317)
Q Consensus 172 ~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~ 251 (317)
. ++ +.+. +...+|+.+|+.+.......... +....+.+.++++... +..+
T Consensus 53 ~--------------~~---~~~~-l~~~ltv~enl~~~~~~~~~~~~--~~~~~~~~~~~l~~~~---~~~~------- 102 (213)
T PRK15177 53 P--------------LG---ANSF-ILPGLTGEENARMMASLYGLDGD--EFSHFCYQLTQLEQCY---TDRV------- 102 (213)
T ss_pred c--------------cc---cccc-cCCcCcHHHHHHHHHHHcCCCHH--HHHHHHHHHhChhHHh---hchH-------
Confidence 0 22 1122 22356899999875432111111 1112233444442211 2333
Q ss_pred hhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 252 LLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
..||+||+||+++|||++.+|+++|||||++ +|+.++..+.+.+.+..+. ..|+...+...+|+|
T Consensus 103 -~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i 173 (213)
T PRK15177 103 -SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAF 173 (213)
T ss_pred -hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCee
Confidence 6899999999999999999999999999999 9999999999987654322 455666666666654
No 349
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3.5e-29 Score=213.87 Aligned_cols=142 Identities=24% Similarity=0.374 Sum_probs=116.8
Q ss_pred EEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEe
Q 021147 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 152 (317)
Q Consensus 73 ~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~ 152 (317)
+++|+++.|++. .+ ++++||+|++|++++|+|+||||||||+++|+|+++ |++|+|+++|.+
T Consensus 1 ~~~~~~~~~~~~-~~-----l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~-----~~~G~i~~~~~~------- 62 (157)
T cd00267 1 EIENLSFRYGGR-TA-----LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK-----PTSGEILIDGKD------- 62 (157)
T ss_pred CeEEEEEEeCCe-ee-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEE-------
Confidence 368999999754 34 999999999999999999999999999999999999 999999999975
Q ss_pred cccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcC
Q 021147 153 QEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFN 232 (317)
Q Consensus 153 Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~ 232 (317)
+.......+++. ++|++|
T Consensus 63 ---------------~~~~~~~~~~~~-------i~~~~q---------------------------------------- 80 (157)
T cd00267 63 ---------------IAKLPLEELRRR-------IGYVPQ---------------------------------------- 80 (157)
T ss_pred ---------------cccCCHHHHHhc-------eEEEee----------------------------------------
Confidence 222222222232 666555
Q ss_pred CCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCC
Q 021147 233 CPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ADR 305 (317)
Q Consensus 233 l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~ 305 (317)
||+||+||+++||+++.+|+++|||||++ ||+.++..+.+.+.++.+. ..|
T Consensus 81 ----------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh 138 (157)
T cd00267 81 ----------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTH 138 (157)
T ss_pred ----------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 89999999999999999999999999999 9999999999999987653 345
Q ss_pred CcchhhcccCC
Q 021147 306 NLSCKSCARNK 316 (317)
Q Consensus 306 ~~~~~~~~~~~ 316 (317)
+...+...+|+
T Consensus 139 ~~~~~~~~~d~ 149 (157)
T cd00267 139 DPELAELAADR 149 (157)
T ss_pred CHHHHHHhCCE
Confidence 55555555554
No 350
>PTZ00243 ABC transporter; Provisional
Probab=99.96 E-value=2.8e-29 Score=278.85 Aligned_cols=147 Identities=17% Similarity=0.178 Sum_probs=121.7
Q ss_pred CceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccC
Q 021147 92 GMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRS 171 (317)
Q Consensus 92 ~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~ 171 (317)
+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++
T Consensus 675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~-----~~~G~i~~~~---------------------------- 721 (1560)
T PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE-----ISEGRVWAER---------------------------- 721 (1560)
T ss_pred eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECC----------------------------
Confidence 3999999999999999999999999999999999999 9999998432
Q ss_pred ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEec
Q 021147 172 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTH 249 (317)
Q Consensus 172 ~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~h 249 (317)
+ |||++|++.+++ .|++||+.++..+ ..++..++++.+++. ...+++|..+.++++
T Consensus 722 -------~-------i~yv~Q~~~l~~--~Tv~enI~~~~~~------~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~ 779 (1560)
T PTZ00243 722 -------S-------IAYVPQQAWIMN--ATVRGNILFFDEE------DAARLADAVRVSQLEADLAQLGGGLETEIGEK 779 (1560)
T ss_pred -------e-------EEEEeCCCccCC--CcHHHHHHcCChh------hHHHHHHHHHHhhhHHHHHHhhccchHHhcCC
Confidence 1 999999998765 5999999975421 122344455554442 334566788888888
Q ss_pred cchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHH
Q 021147 250 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDM 295 (317)
Q Consensus 250 g~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~ 295 (317)
| .+||||||||++||||++.+|+++|||||++ ||+.+...+.+.
T Consensus 780 g--~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~ 824 (1560)
T PTZ00243 780 G--VNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEE 824 (1560)
T ss_pred C--CCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHH
Confidence 7 8999999999999999999999999999999 999998888764
No 351
>PLN03073 ABC transporter F family; Provisional
Probab=99.96 E-value=4.2e-29 Score=259.37 Aligned_cols=181 Identities=14% Similarity=0.206 Sum_probs=134.0
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||++.|++...+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+++. ..++
T Consensus 507 ~~L~~~~ls~~y~~~~~i-----l~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~-----p~~G~I~~~~~-~~ig 575 (718)
T PLN03073 507 PIISFSDASFGYPGGPLL-----FKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ-----PSSGTVFRSAK-VRMA 575 (718)
T ss_pred ceEEEEeeEEEeCCCCee-----EeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCceEEECCc-eeEE
Confidence 589999999999654434 999999999999999999999999999999999999 99999998764 2355
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHH--hhhccCCCChHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLA--VLKSMEGDSDVEKQYNQIV 227 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~--~~~~~~~~~~~~~~~~~~~ 227 (317)
|++|++.. .+++.+|.. +...++.. ..+++..+
T Consensus 576 yv~Q~~~~------------------------------------------~l~~~~~~~~~~~~~~~~~---~~~~i~~~ 610 (718)
T PLN03073 576 VFSQHHVD------------------------------------------GLDLSSNPLLYMMRCFPGV---PEQKLRAH 610 (718)
T ss_pred EEeccccc------------------------------------------cCCcchhHHHHHHHhcCCC---CHHHHHHH
Confidence 55554210 011222211 11111111 12446778
Q ss_pred HHHcCCCc-ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH---Hh
Q 021147 228 ATTFNCPY-LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL---EH 302 (317)
Q Consensus 228 a~~~~l~~-~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~---~~ 302 (317)
+..+++.. .. ..+. ..||||||||++|||+++.+|+++||||||+ ||+.+...+.+.+.++. -.
T Consensus 611 L~~~gl~~~~~---~~~~--------~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIi 679 (718)
T PLN03073 611 LGSFGVTGNLA---LQPM--------YTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLM 679 (718)
T ss_pred HHHCCCChHHh---cCCc--------cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 88888741 11 2333 6999999999999999999999999999999 99999999988887641 12
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|+...+..++|||
T Consensus 680 vSHd~~~i~~~~drv 694 (718)
T PLN03073 680 VSHDEHLISGSVDEL 694 (718)
T ss_pred EECCHHHHHHhCCEE
Confidence 567777777777764
No 352
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=5.6e-29 Score=226.28 Aligned_cols=201 Identities=18% Similarity=0.217 Sum_probs=147.7
Q ss_pred CceEEEeEEEEcCCCC-----------cc----ccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCC
Q 021147 70 SLTDAKNKILSYTPGA-----------WI----ENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS 134 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~-----------~~----~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p 134 (317)
.+|.++||++.|.-.. .. ....|++||||+|++|++++++|+|||||||++|+|+|++. |
T Consensus 2 ~~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~-----p 76 (325)
T COG4586 2 AMIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL-----P 76 (325)
T ss_pred ceeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc-----c
Confidence 5678888888874110 00 12246999999999999999999999999999999999999 9
Q ss_pred cCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccc-cccccccchhhHHHHHHhhh-c
Q 021147 135 ERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP-SVIRKVNFVIFVVDGLAVLK-S 212 (317)
Q Consensus 135 ~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~-Q~~~~~~~~~tv~eni~~~~-~ 212 (317)
++|.|.++|.+. . .+.+++- +.+++|+ |-.++.. .+.+.+.+.+.. -
T Consensus 77 ~~G~v~V~G~~P---------------------f--~~~~~~~-------~~~~~v~gqk~ql~W-dlp~~ds~~v~~~I 125 (325)
T COG4586 77 TSGKVRVNGKDP---------------------F--RRREEYL-------RSIGLVMGQKLQLWW-DLPALDSLEVLKLI 125 (325)
T ss_pred CCCeEEecCcCc---------------------c--hhHHHHH-------HHHHHHhhhhheeee-echhhhhHHHHHHH
Confidence 999999999751 1 1222222 3377764 3333222 122333333322 2
Q ss_pred cCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHH
Q 021147 213 MEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELI 291 (317)
Q Consensus 213 ~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~ 291 (317)
|....+.-.++.....+.+++.... +.++ ..||.|||.|+.+|.+|+++|++++|||||- ||...+..
T Consensus 126 y~Ipd~~F~~r~~~l~eiLdl~~~l---k~~v--------r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ 194 (325)
T COG4586 126 YEIPDDEFAERLDFLTEILDLEGFL---KWPV--------RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQAN 194 (325)
T ss_pred HhCCHHHHHHHHHHHHHHhcchhhh---hhhh--------hhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHH
Confidence 3333344556677777777764222 4555 8999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHh-------cCCCcchhhcccCCC
Q 021147 292 IVDMLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 292 l~~~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
+.+.++++.+. +.|.+..+...||||
T Consensus 195 ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv 227 (325)
T COG4586 195 IREFLKEYNEERQATVLLTTHIFDDIATLCDRV 227 (325)
T ss_pred HHHHHHHHHHhhCceEEEEecchhhHHHhhhhe
Confidence 99999998764 678889999998886
No 353
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.96 E-value=4e-29 Score=238.09 Aligned_cols=162 Identities=15% Similarity=0.131 Sum_probs=125.9
Q ss_pred EEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhc
Q 021147 108 LIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKI 187 (317)
Q Consensus 108 IvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~i 187 (317)
|+||||||||||+|+|+|+++ |++|+|.++|++ +...+. .++ .+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~i~g~~----------------------i~~~~~--~~~-------~i 44 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ-----PDSGSIMLDGED----------------------VTNVPP--HLR-------HI 44 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC-----CCceEEEECCEE----------------------CCCCCH--HHC-------CE
Confidence 689999999999999999999 999999999986 333322 222 39
Q ss_pred cccccccccccchhhHHHHHHhhhccCCCC-hHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhccc
Q 021147 188 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDS-DVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLG 266 (317)
Q Consensus 188 g~v~Q~~~~~~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~ia 266 (317)
||++|++.+|+ .+|+++|+.++....... ....+++.++++.+++.... +... .+|||||+||++||
T Consensus 45 ~~v~q~~~l~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~--------~~LSgGq~qRvala 112 (325)
T TIGR01187 45 NMVFQSYALFP-HMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFA---DRKP--------HQLSGGQQQRVALA 112 (325)
T ss_pred EEEecCccccC-CCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCcchh---cCCh--------hhCCHHHHHHHHHH
Confidence 99999987654 589999999864322212 23345677888888874221 2223 68999999999999
Q ss_pred ceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------cCCCcchhhcccCCC
Q 021147 267 ELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 267 ral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
|||+.+|+++|||||++ ||+.++..+.+.|+++.+. ..|++..+...+|||
T Consensus 113 raL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i 171 (325)
T TIGR01187 113 RALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRI 171 (325)
T ss_pred HHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 99999999999999999 9999999999999988653 446666666667764
No 354
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=8.1e-29 Score=218.65 Aligned_cols=187 Identities=14% Similarity=0.140 Sum_probs=142.6
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||++.|+.+.|..+.. ....+|+++||+|++|+++.|+|.||||||||++.|+|-+. |++|+|+++|.+
T Consensus 1 Mi~~~~~~~~f~~g~~-~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~-----~t~G~I~Idg~d----- 69 (263)
T COG1101 1 MISLSNATKTFFKGTP-LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK-----PTSGQILIDGVD----- 69 (263)
T ss_pred CcccccceeeecCCCh-hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc-----cCCceEEECcee-----
Confidence 5778888888754432 23344999999999999999999999999999999999999 999999999987
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhccCCC---C----hHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSMEGD---S----DVEKQ 222 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~~~~---~----~~~~~ 222 (317)
++.++..+.... ++-|+|+|. -..+.+||.||+.++...... . +...+
T Consensus 70 -----------------Vtk~~~~~RA~~-------larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~ 125 (263)
T COG1101 70 -----------------VTKKSVAKRANL-------LARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRS 125 (263)
T ss_pred -----------------cccCCHHHHhhH-------HHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHH
Confidence 566665544444 788999985 244578999999887543211 1 11223
Q ss_pred HHHHHHHHcCCCc-ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCPY-LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 223 ~~~~~a~~~~l~~-~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
...+-++.+++-. ..+ +.++ .-|||||||-++++.|.++.|++++|||-|+ |||.+...+++.-.++.
T Consensus 126 ~f~~~l~~l~lgLenrL--~~~i--------glLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV 195 (263)
T COG1101 126 SFRERLARLGLGLENRL--SDRI--------GLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIV 195 (263)
T ss_pred HHHHHHhhcccchhhhh--cChh--------hhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHH
Confidence 3334444444411 111 2233 5799999999999999999999999999999 99999999999988876
Q ss_pred Hh
Q 021147 301 EH 302 (317)
Q Consensus 301 ~~ 302 (317)
+.
T Consensus 196 ~~ 197 (263)
T COG1101 196 EE 197 (263)
T ss_pred Hh
Confidence 54
No 355
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=3.3e-29 Score=255.46 Aligned_cols=183 Identities=15% Similarity=0.169 Sum_probs=135.7
Q ss_pred eEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEE-----------ECcc
Q 021147 76 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-----------YNSS 144 (317)
Q Consensus 76 nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~-----------i~g~ 144 (317)
+++++|+.+..+ |++++ .+++|+++||+||||||||||+|+|+|+++ |++|+|. ++|+
T Consensus 78 ~~~~~yg~~~~~-----L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~-----p~~G~i~~~~~~~~~~~~~~G~ 146 (590)
T PRK13409 78 EPVHRYGVNGFK-----LYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI-----PNLGDYEEEPSWDEVLKRFRGT 146 (590)
T ss_pred CceEEecCCcee-----EecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc-----CCCccccCCCcHHHHHHHhCCh
Confidence 489999765444 99999 999999999999999999999999999999 9999997 5665
Q ss_pred cCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhcccccc----ccccccchhhHHHHHHhhhccCCCChHH
Q 021147 145 VGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS----VIRKVNFVIFVVDGLAVLKSMEGDSDVE 220 (317)
Q Consensus 145 ~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q----~~~~~~~~~tv~eni~~~~~~~~~~~~~ 220 (317)
+ +.. +..........+++.+| .+.++. .||.+++... ..
T Consensus 147 ~----------------------l~~-----~~~~~~~~~~~~~~~~q~~~~~p~~~~--~tv~e~l~~~--------~~ 189 (590)
T PRK13409 147 E----------------------LQN-----YFKKLYNGEIKVVHKPQYVDLIPKVFK--GKVRELLKKV--------DE 189 (590)
T ss_pred H----------------------HHH-----HHHHHhccCcceeecccchhhhhhhhc--chHHHHHHhh--------hH
Confidence 4 211 11111110111344444 443333 3888888632 12
Q ss_pred HHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 221 KQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 221 ~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
..++.++++.+++.... +..+ .+|||||+||++||+|++.+|+++||||||+ ||+.++..+.+.|+++
T Consensus 190 ~~~~~~~l~~l~l~~~~---~~~~--------~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l 258 (590)
T PRK13409 190 RGKLDEVVERLGLENIL---DRDI--------SELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIREL 258 (590)
T ss_pred HHHHHHHHHHcCCchhh---cCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 34577888888874221 3444 7999999999999999999999999999999 9999999999999998
Q ss_pred HH-----hcCCCcchhhcccCCC
Q 021147 300 LE-----HADRNLSCKSCARNKV 317 (317)
Q Consensus 300 ~~-----~~~~~~~~~~~~~~~~ 317 (317)
.+ ..+|++..+..++|+|
T Consensus 259 ~~g~tvIivsHd~~~l~~~~D~v 281 (590)
T PRK13409 259 AEGKYVLVVEHDLAVLDYLADNV 281 (590)
T ss_pred HCCCEEEEEeCCHHHHHHhCCEE
Confidence 53 2466677777777764
No 356
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.1e-28 Score=215.52 Aligned_cols=188 Identities=15% Similarity=0.080 Sum_probs=149.0
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+.+++++||+.+..+.+.+ |++|||+|++||+++|+||||||||||.+.|+|.-.+. +++|+|.++|++
T Consensus 1 m~~L~I~dLhv~v~~~keI-----LkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~---Vt~G~I~~~Ged--- 69 (251)
T COG0396 1 MMMLEIKDLHVEVEGKKEI-----LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYE---VTEGEILFDGED--- 69 (251)
T ss_pred CceeEEeeeEEEecCchhh-----hcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCce---EecceEEECCcc---
Confidence 4589999999999764344 99999999999999999999999999999999996433 899999999998
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-C---CChHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-G---DSDVEKQYN 224 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~---~~~~~~~~~ 224 (317)
+..+++.+..+. .|.+-+|.|.-+++ .++.+.+....... . ......+++
T Consensus 70 -------------------I~~l~~~ERAr~------GifLafQ~P~ei~G-V~~~~fLr~a~n~~~~~~~~~~~~~~~~ 123 (251)
T COG0396 70 -------------------ILELSPDERARA------GIFLAFQYPVEIPG-VTNSDFLRAAMNARRGARGILPEFIKEL 123 (251)
T ss_pred -------------------cccCCHhHHHhc------CCEEeecCCccCCC-eeHHHHHHHHHHhhhccccccHHHHHHH
Confidence 667777654432 36777999876665 46666665432111 1 123456778
Q ss_pred HHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 225 QIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 225 ~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
.++++.++++..-+..... ..+|||+|.|..|+++++.+|++.|||||.| ||..+-+.+.+.+..++..
T Consensus 124 ~e~~~~l~~~~~~l~R~vN---------~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~ 193 (251)
T COG0396 124 KEKAELLGLDEEFLERYVN---------EGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREE 193 (251)
T ss_pred HHHHHHcCCCHHHhhcccC---------CCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcC
Confidence 8899999985432333344 5899999999999999999999999999999 9999999999999987643
No 357
>PLN03140 ABC transporter G family member; Provisional
Probab=99.95 E-value=4.4e-28 Score=267.06 Aligned_cols=190 Identities=13% Similarity=0.087 Sum_probs=141.6
Q ss_pred ceEEEeEEEEcCCCCc-------cccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECc
Q 021147 71 LTDAKNKILSYTPGAW-------IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~-------~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g 143 (317)
.+.++||++.++.... .....+|+|||+++++|+++||+||||||||||+++|+|+.++. +.+|+|.++|
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g---~~~G~I~inG 943 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIRISG 943 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC---cccceEEECC
Confidence 4899999998742100 00112399999999999999999999999999999999997632 4789999999
Q ss_pred ccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc--cCCCC--hH
Q 021147 144 SVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS--MEGDS--DV 219 (317)
Q Consensus 144 ~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~--~~~~~--~~ 219 (317)
.+ . +...+++. +||++|+..++ ..+||+||+.+... .+... ..
T Consensus 944 ~~----------------------~---~~~~~~~~-------igyv~Q~d~~~-~~lTV~E~L~~~a~lr~~~~~~~~~ 990 (1470)
T PLN03140 944 FP----------------------K---KQETFARI-------SGYCEQNDIHS-PQVTVRESLIYSAFLRLPKEVSKEE 990 (1470)
T ss_pred cc----------------------C---ChHHhhhh-------eEEEccccccC-CCCcHHHHHHHHHHhCCCCCCCHHH
Confidence 75 2 11223333 99999987644 46899999987532 12221 22
Q ss_pred HHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 220 EKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 220 ~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
..+.+.++++.+++.... ...++..+ ...||||||||++||++|+.+|++++|||||+ ||+.+...+.+.|++
T Consensus 991 ~~~~v~~vl~~lgL~~~~-----~~~vg~~~-~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~ 1064 (1470)
T PLN03140 991 KMMFVDEVMELVELDNLK-----DAIVGLPG-VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1064 (1470)
T ss_pred HHHHHHHHHHHCCChhHh-----CCccCCCC-CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 334577889998874211 12122111 14799999999999999999999999999999 999999999999999
Q ss_pred HHHh
Q 021147 299 CLEH 302 (317)
Q Consensus 299 l~~~ 302 (317)
+.+.
T Consensus 1065 l~~~ 1068 (1470)
T PLN03140 1065 TVDT 1068 (1470)
T ss_pred HHHC
Confidence 8643
No 358
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=1.7e-27 Score=243.69 Aligned_cols=195 Identities=18% Similarity=0.175 Sum_probs=156.5
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
..+.++|++...++... .....|++||.++++||++||+||||||||||+++|+|....+ ...+|+|++||+.
T Consensus 24 ~~~~~~~~~~~~~~~~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~--~~~~G~ilvNG~~---- 96 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGG--LKLSGEILLNGRP---- 96 (613)
T ss_pred ceeEEEEEEEEecCCCC-ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCC--CcceEEEEECCcc----
Confidence 35889999988865421 0112299999999999999999999999999999999999732 2579999999964
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc--cCC--CChHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS--MEG--DSDVEKQYNQ 225 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~--~~~--~~~~~~~~~~ 225 (317)
.+.+.+++. +|||.|+-. +.+.+||+|++.+... .+. ..++.++++.
T Consensus 97 ---------------------~~~~~~~~~-------s~yV~QdD~-l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~ 147 (613)
T KOG0061|consen 97 ---------------------RDSRSFRKI-------SGYVQQDDV-LLPTLTVRETLRFSALLRLPSSLSKEEKRERVE 147 (613)
T ss_pred ---------------------Cchhhhhhe-------eEEEccccc-ccccccHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 344556665 999999885 4457999999988642 333 2355667888
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHhcC
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEHAD 304 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~~~ 304 (317)
+++..+++. +-.+++++..+. ..+|||||+|+++|.-++.+|++++|||||+ ||..+...+.+.|+++.+. +
T Consensus 148 ~vi~~LgL~-----~~~~t~ig~~~~-rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-g 220 (613)
T KOG0061|consen 148 EVISELGLE-----KCADTLIGNPGI-RGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-G 220 (613)
T ss_pred HHHHHcCCh-----hhccceecCCCC-CccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-C
Confidence 899999863 235667776643 7899999999999999999999999999999 9999999999999998766 5
Q ss_pred CCc
Q 021147 305 RNL 307 (317)
Q Consensus 305 ~~~ 307 (317)
+-+
T Consensus 221 rtV 223 (613)
T KOG0061|consen 221 RTV 223 (613)
T ss_pred CEE
Confidence 543
No 359
>PLN03073 ABC transporter F family; Provisional
Probab=99.95 E-value=5.8e-28 Score=250.85 Aligned_cols=213 Identities=12% Similarity=0.030 Sum_probs=136.2
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++|++|+|++.. + |+|+||+|++|+++||||+||||||||+|+|+|.... ..|.+|+|.+.++.
T Consensus 176 ~~I~i~nls~~y~~~~-l-----l~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~--g~p~~g~I~~~~Q~---- 243 (718)
T PLN03073 176 KDIHMENFSISVGGRD-L-----IVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAID--GIPKNCQILHVEQE---- 243 (718)
T ss_pred eeEEEceEEEEeCCCE-E-----EECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCCCCEEEEEecc----
Confidence 4799999999997543 4 9999999999999999999999999999999997521 13888998865442
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-----------------
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS----------------- 212 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~----------------- 212 (317)
... ..++..+... ..+ ......+.+.+++++|.+.+... +..+|......
T Consensus 244 -----~~g-~~~t~~~~v~-~~~----~~~~~~~~~~~~~~~q~~~l~~~--~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 310 (718)
T PLN03073 244 -----VVG-DDTTALQCVL-NTD----IERTQLLEEEAQLVAQQRELEFE--TETGKGKGANKDGVDKDAVSQRLEEIYK 310 (718)
T ss_pred -----CCC-CCCCHHHHHH-Hhh----HHHHHHHHHHHHHHHHHHHhhhc--ccccccccccccccchHHHHHHHHHHHH
Confidence 100 0000000000 000 01111112337788776543221 11111110000
Q ss_pred -cC-CCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHH
Q 021147 213 -ME-GDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENE 289 (317)
Q Consensus 213 -~~-~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~ 289 (317)
+. ........++.+++..+++.... ...++ .+|||||+||++|||||+.+|+++||||||+ ||+.+.
T Consensus 311 ~~~~~~~~~~~~r~~~~L~~lgl~~~~--~~~~~--------~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~ 380 (718)
T PLN03073 311 RLELIDAYTAEARAASILAGLSFTPEM--QVKAT--------KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAV 380 (718)
T ss_pred HHHhcCcchHHHHHHHHHHHCCCChHH--HhCch--------hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 00 00011233455566666653111 13344 7999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHH---hcCCCcchhhcccCCC
Q 021147 290 LIIVDMLRYCLE---HADRNLSCKSCARNKV 317 (317)
Q Consensus 290 ~~l~~~l~~l~~---~~~~~~~~~~~~~~~~ 317 (317)
..+.+.|+++.. ...|+...+..++|++
T Consensus 381 ~~l~~~L~~~~~tviivsHd~~~l~~~~d~i 411 (718)
T PLN03073 381 LWLETYLLKWPKTFIVVSHAREFLNTVVTDI 411 (718)
T ss_pred HHHHHHHHHcCCEEEEEECCHHHHHHhCCEE
Confidence 999999988621 2567777777777764
No 360
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=1.8e-27 Score=238.52 Aligned_cols=212 Identities=18% Similarity=0.126 Sum_probs=144.1
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|.+|.++|+++.|++.. + ++++||+|.+|+.+||||+||||||||+|+|+|... |++|+|...+. .++
T Consensus 1 m~~i~~~~ls~~~g~~~-l-----~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~-----~~~G~i~~~~~-~~v 68 (530)
T COG0488 1 MSMITLENLSLAYGDRP-L-----LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE-----PDSGEVTRPKG-LRV 68 (530)
T ss_pred CceEEEeeeEEeeCCce-e-----ecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc-----CCCCeEeecCC-ceE
Confidence 46899999999996554 4 999999999999999999999999999999999999 99999998875 468
Q ss_pred eeEecccCCCCcccccceeeccCC-hHHHHHHHHHhhhhccccccccccccchhhHHHHHH--hhhccCCCChHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSD-SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLA--VLKSMEGDSDVEKQYNQ 225 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~--~~~~~~~~~~~~~~~~~ 225 (317)
+|+.|++.+++.-++.+..+.... ...+.+......... + ++ ......-+. +..... -....++.
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~---~-~~-----~~~~~~~l~~~~~~~~~---~~~e~~~~ 136 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALL---A-DP-----DDELLAELEALLEELDG---WTLEARAE 136 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhc---c-cc-----hhHHHHHHHHHHHhhcc---cchHHHHH
Confidence 999999888765544443332211 112221111111000 0 00 001111111 001111 12234466
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH---
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE--- 301 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~--- 301 (317)
.++..++++.. ..++ .+||||||.|+++|+||..+|++|+|||||+ ||.++..-+.+.|.++.-
T Consensus 137 ~~L~gLg~~~~----~~~~--------~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtvi 204 (530)
T COG0488 137 EALLGLGFPDE----DRPV--------SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVI 204 (530)
T ss_pred HHHhcCCCCcc----cCch--------hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEE
Confidence 67777776422 3455 7999999999999999999999999999999 999999988888876421
Q ss_pred hcCCCcchhhcccCC
Q 021147 302 HADRNLSCKSCARNK 316 (317)
Q Consensus 302 ~~~~~~~~~~~~~~~ 316 (317)
..+|+=++..++|++
T Consensus 205 iVSHDR~FLd~V~t~ 219 (530)
T COG0488 205 VVSHDRYFLDNVATH 219 (530)
T ss_pred EEeCCHHHHHHHhhh
Confidence 134454555555544
No 361
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=3.7e-27 Score=212.06 Aligned_cols=170 Identities=13% Similarity=0.132 Sum_probs=135.5
Q ss_pred ccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeec
Q 021147 90 VGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIR 169 (317)
Q Consensus 90 ~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~ 169 (317)
+.+|+||||++++||.+||||+||||||||+|+|+|.++ |++|+|.++|+-..
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~-----Pt~G~v~v~G~v~~---------------------- 92 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK-----PTSGKVKVTGKVAP---------------------- 92 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC-----CCCceEEEcceEeh----------------------
Confidence 345999999999999999999999999999999999999 99999999997300
Q ss_pred cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-CCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEe
Q 021147 170 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 248 (317)
Q Consensus 170 ~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~ 248 (317)
-++ - ..|+ .+.+|.+||+.+..... ....+.+++..++.+-+.+-... ..|+
T Consensus 93 li~-----l-------g~Gf--------~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi---~~Pv---- 145 (249)
T COG1134 93 LIE-----L-------GAGF--------DPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFI---DQPV---- 145 (249)
T ss_pred hhh-----c-------ccCC--------CcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---hCch----
Confidence 000 0 0443 34578999998754333 33345566666776666653222 4676
Q ss_pred ccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 249 HGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 249 hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
..+|-||+.|++++-|...+|++||+||..+ .|+.=+++=.+.+.++.+. .+|++..+..+|||+
T Consensus 146 ----ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~ 217 (249)
T COG1134 146 ----KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRA 217 (249)
T ss_pred ----hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCee
Confidence 8999999999999999999999999999999 9999999988888888543 788899999999985
No 362
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.94 E-value=7e-27 Score=234.35 Aligned_cols=184 Identities=17% Similarity=0.201 Sum_probs=140.7
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
...++++|+++.|++...+ ++++||.|.+|+.+|||||||||||||+|+|+|... |.+|+|.+.-. ..
T Consensus 319 ~~vl~~~~~~~~y~~~~~l-----~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~-----~~~G~v~~g~~-v~- 386 (530)
T COG0488 319 KLVLEFENVSKGYDGGRLL-----LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG-----PLSGTVKVGET-VK- 386 (530)
T ss_pred CeeEEEeccccccCCCcee-----ecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc-----cCCceEEeCCc-eE-
Confidence 4579999999999765444 999999999999999999999999999999999999 89999997544 34
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
+||.+|+...+....|+.+++.-..+ .. .+..+...+
T Consensus 387 --------------------------------------igyf~Q~~~~l~~~~t~~d~l~~~~~--~~---~e~~~r~~L 423 (530)
T COG0488 387 --------------------------------------IGYFDQHRDELDPDKTVLEELSEGFP--DG---DEQEVRAYL 423 (530)
T ss_pred --------------------------------------EEEEEehhhhcCccCcHHHHHHhhCc--cc---cHHHHHHHH
Confidence 45555544222133456666542211 11 144577888
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH---HhcC
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL---EHAD 304 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~---~~~~ 304 (317)
..++++-... ..++ ..||||||.|+.+|+.+..+|.+|||||||+ ||..+...+.++|..+- -..+
T Consensus 424 ~~f~F~~~~~--~~~v--------~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VS 493 (530)
T COG0488 424 GRFGFTGEDQ--EKPV--------GVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVS 493 (530)
T ss_pred HHcCCChHHH--hCch--------hhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEe
Confidence 8888752221 3455 7899999999999999999999999999999 99999999999998863 1356
Q ss_pred CCcchhhcccCCC
Q 021147 305 RNLSCKSCARNKV 317 (317)
Q Consensus 305 ~~~~~~~~~~~~~ 317 (317)
|+-+++..+++++
T Consensus 494 HDr~Fl~~va~~i 506 (530)
T COG0488 494 HDRYFLDRVATRI 506 (530)
T ss_pred CCHHHHHhhcceE
Confidence 6777777766653
No 363
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.2e-26 Score=197.55 Aligned_cols=190 Identities=19% Similarity=0.196 Sum_probs=132.9
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
+.+.++++++|+.|+.... .+||||++.|||+++|||+||||||||+++|++-+. |++|+|.+...+..
T Consensus 3 ~~PLL~V~~lsk~Yg~~~g------c~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~-----p~~G~v~Y~~r~~~ 71 (258)
T COG4107 3 DKPLLSVSGLSKLYGPGKG------CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT-----PDAGTVTYRMRDGQ 71 (258)
T ss_pred CCcceeehhhhhhhCCCcC------ccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC-----CCCCeEEEEcCCCC
Confidence 3568999999999987654 999999999999999999999999999999999999 99999998765311
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhcccccccccc-ccchhhHHHHH-----HhhhccCCCChHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK-VNFVIFVVDGL-----AVLKSMEGDSDVEK 221 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~-~~~~~tv~eni-----~~~~~~~~~~~~~~ 221 (317)
...+..+...+.|..+ ...-|+|.|+|.- +....+.--|| +.+..... ...
T Consensus 72 -----------------~~dl~~msEaeRR~L~---RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG---~iR 128 (258)
T COG4107 72 -----------------PRDLYTMSEAERRRLL---RTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG---NIR 128 (258)
T ss_pred -----------------chhHhhhchHHHHHHh---hhccceeecCccccceeeeccCCccchhHHhhhhhhhh---hHH
Confidence 0011122222222211 1236999998741 11111112232 12221111 112
Q ss_pred HHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 222 QYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 222 ~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+.....++.+.++.... +..+ ..+|||++||+.|||-|...|++.++||||- ||...+..+.++++.+.
T Consensus 129 ~~a~~WL~~VEI~~~Ri-DD~P---------rtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv 198 (258)
T COG4107 129 AEAQDWLEEVEIDLDRI-DDLP---------RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV 198 (258)
T ss_pred HHHHHHHHhcccCcccc-cCcc---------cccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHH
Confidence 22344566666643322 2344 5899999999999999999999999999999 99999999999999886
Q ss_pred H
Q 021147 301 E 301 (317)
Q Consensus 301 ~ 301 (317)
.
T Consensus 199 ~ 199 (258)
T COG4107 199 R 199 (258)
T ss_pred H
Confidence 4
No 364
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.93 E-value=1.3e-26 Score=202.55 Aligned_cols=139 Identities=19% Similarity=0.216 Sum_probs=103.3
Q ss_pred CceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccC
Q 021147 92 GMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRS 171 (317)
Q Consensus 92 ~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~ 171 (317)
+|+|+||+|++|++++|+||||||||||+|+|. +++|+|.+++.. ...
T Consensus 10 ~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il---------~~~G~v~~~~~~-----------------------~~~ 57 (176)
T cd03238 10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL---------YASGKARLISFL-----------------------PKF 57 (176)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHh---------hcCCcEEECCcc-----------------------ccc
Confidence 399999999999999999999999999999983 348999987752 001
Q ss_pred ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccc
Q 021147 172 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGD 251 (317)
Q Consensus 172 ~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~ 251 (317)
. +.. ++|++| .++++.+++....+ +...
T Consensus 58 ~----~~~-------~~~~~q--------------------------------~~~l~~~~L~~~~~--~~~~------- 85 (176)
T cd03238 58 S----RNK-------LIFIDQ--------------------------------LQFLIDVGLGYLTL--GQKL------- 85 (176)
T ss_pred c----ccc-------EEEEhH--------------------------------HHHHHHcCCCcccc--CCCc-------
Confidence 0 111 555443 23455566521111 2233
Q ss_pred hhcCcHHHHHhhcccceeccc--cceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCC
Q 021147 252 LLSLTDRARIRTYLGELLGIP--PAKQIFDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNK 316 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~~~--p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~ 316 (317)
.+||+||+||+++|||++.+ |+++|||||++ ||+.+...+.+.++++.+. ..|+...+. .+||
T Consensus 86 -~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~-~~d~ 157 (176)
T cd03238 86 -STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS-SADW 157 (176)
T ss_pred -CcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCE
Confidence 68999999999999999999 99999999999 9999999999999987532 445555443 3554
No 365
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.93 E-value=1.2e-26 Score=255.90 Aligned_cols=173 Identities=14% Similarity=0.098 Sum_probs=128.5
Q ss_pred CceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccC
Q 021147 92 GMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRS 171 (317)
Q Consensus 92 ~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~ 171 (317)
+|+|||+++++||+++|+||||||||||+|+|+|+..+ ...|++|+|.++|++ +...
T Consensus 76 iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~-~~~~~~G~I~~~G~~----------------------~~~~ 132 (1394)
T TIGR00956 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDG-FHIGVEGVITYDGIT----------------------PEEI 132 (1394)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCC-CCCCceeEEEECCEe----------------------hHHH
Confidence 59999999999999999999999999999999999631 011789999999975 2111
Q ss_pred ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc--CC----C-ChHH-HHH-HHHHHHHcCCCcccCCCCC
Q 021147 172 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM--EG----D-SDVE-KQY-NQIVATTFNCPYLSFRDDK 242 (317)
Q Consensus 172 ~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~--~~----~-~~~~-~~~-~~~~a~~~~l~~~~l~~~~ 242 (317)
. ...+ +.++|++|+..++ ..+||+||+.+.... +. . .... .++ +..+++.+++.. -.
T Consensus 133 ~-~~~r-------~~i~yv~Q~d~~~-~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-----~~ 198 (1394)
T TIGR00956 133 K-KHYR-------GDVVYNAETDVHF-PHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSH-----TR 198 (1394)
T ss_pred H-hhcC-------ceeEEeccccccC-CCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCccc-----cc
Confidence 1 1122 2399999987654 468999999885321 11 1 1111 223 245788888632 12
Q ss_pred CEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 243 PVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 243 ~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
.+.++.. ....||||||||++||++++.+|++++|||||+ ||+.+...+.+.|+++.+.
T Consensus 199 ~t~vg~~-~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~ 258 (1394)
T TIGR00956 199 NTKVGND-FVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANI 258 (1394)
T ss_pred CceeCCC-cCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHh
Confidence 2323321 115799999999999999999999999999999 9999999999999998754
No 366
>PLN03140 ABC transporter G family member; Provisional
Probab=99.93 E-value=5.5e-26 Score=250.54 Aligned_cols=168 Identities=17% Similarity=0.173 Sum_probs=128.0
Q ss_pred cCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCc---CcEEEECcccCceeeEecccCCCCccccccee
Q 021147 91 GGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSVGDGTYFLQEYTIPRGVRHGELV 167 (317)
Q Consensus 91 ~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~---~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~ 167 (317)
.+|+|+|+.|++|++++|+||||||||||+|+|+|+++ |+ +|+|.++|++
T Consensus 179 ~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~-----~~~~~~G~I~~nG~~---------------------- 231 (1470)
T PLN03140 179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD-----PSLKVSGEITYNGYR---------------------- 231 (1470)
T ss_pred eeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-----CCCcceeEEEECCEe----------------------
Confidence 35999999999999999999999999999999999998 77 9999999986
Q ss_pred eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC--C-------CChHHH-----------------
Q 021147 168 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME--G-------DSDVEK----------------- 221 (317)
Q Consensus 168 ~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~--~-------~~~~~~----------------- 221 (317)
+.+.. .++. ++|++|+..++ ..+||+||+.|..... . .....+
T Consensus 232 ~~~~~---~~~~-------i~yv~Q~d~~~-~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~ 300 (1470)
T PLN03140 232 LNEFV---PRKT-------SAYISQNDVHV-GVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKA 300 (1470)
T ss_pred chhhc---ccce-------eEEecccccCC-CcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHH
Confidence 22221 1223 99999987544 4689999998853211 0 000000
Q ss_pred ---------HHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHH
Q 021147 222 ---------QYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELI 291 (317)
Q Consensus 222 ---------~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~ 291 (317)
..+..+++.+|+.. ..++.++.. ....||||||||++||++++.+|+++++||||+ ||+.+...
T Consensus 301 ~~~~~~~~~~~~~~~L~~lGL~~-----~~~t~vg~~-~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~ 374 (1470)
T PLN03140 301 TAMEGVKSSLITDYTLKILGLDI-----CKDTIVGDE-MIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQ 374 (1470)
T ss_pred hhhhcchhhHHHHHHHHHcCCcc-----ccCceeCCc-cccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHH
Confidence 11345677777631 233334332 126899999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHh
Q 021147 292 IVDMLRYCLEH 302 (317)
Q Consensus 292 l~~~l~~l~~~ 302 (317)
+.+.|+++.+.
T Consensus 375 i~~~Lr~la~~ 385 (1470)
T PLN03140 375 IVKCLQQIVHL 385 (1470)
T ss_pred HHHHHHHHHHh
Confidence 99999998654
No 367
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.93 E-value=4.4e-25 Score=221.50 Aligned_cols=201 Identities=17% Similarity=0.160 Sum_probs=148.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHcc------ccccccC--------C--CCceEEEeEEEEcCCCCccccccCceeeeeEe
Q 021147 37 SRDSWDSLVDQRRRDAVFREVLQS------YDQLRTR--------I--GSLTDAKNKILSYTPGAWIENVGGMTLSDYDV 100 (317)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--------~--~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I 100 (317)
....+..+.+-++...|+.++... ++..... . ...|+++||+..-++++.. |++.||+|
T Consensus 342 fi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~~l-----l~~l~~~v 416 (604)
T COG4178 342 FIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTL-----LSELNFEV 416 (604)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCCCee-----eccceeee
Confidence 344455555666666777665421 1111111 1 4689999999999887655 99999999
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHH
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRM 180 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~ 180 (317)
++|+.+-|.||||||||||+|+|+|+++ ..+|+|.+-...
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGLWP-----~g~G~I~~P~~~----------------------------------- 456 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGLWP-----WGSGRISMPADS----------------------------------- 456 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCc-----cCCCceecCCCC-----------------------------------
Confidence 9999999999999999999999999999 778887743110
Q ss_pred HHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcc--cCCCCCCEEEEeccchhcCcHH
Q 021147 181 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYL--SFRDDKPVVVVTHGDLLSLTDR 258 (317)
Q Consensus 181 ~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~l~~~~~~~i~~hg~~~~LSgG 258 (317)
.+-|+||.|++-. .|++|-+++...... -..+++.+++..++++.. ++.+.-+ =+ ..||+|
T Consensus 457 -----~~lflpQ~PY~p~--GtLre~l~YP~~~~~---~~d~~l~~vL~~vgL~~L~~rl~~~~~-----W~--~vLS~G 519 (604)
T COG4178 457 -----ALLFLPQRPYLPQ--GTLREALCYPNAAPD---FSDAELVAVLHKVGLGDLAERLDEEDR-----WD--RVLSGG 519 (604)
T ss_pred -----ceEEecCCCCCCC--ccHHHHHhCCCCCCC---CChHHHHHHHHHcCcHHHHHHHhccCc-----Hh--hhcChh
Confidence 1567788775443 378888876543221 334568899999998422 1111111 02 689999
Q ss_pred HHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 259 ARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 259 ~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
||||+++||++++.|++++|||+|+ ||+.++..+.+++++-
T Consensus 520 EqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~ 561 (604)
T COG4178 520 EQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEE 561 (604)
T ss_pred HHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhh
Confidence 9999999999999999999999999 9999999999999884
No 368
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.7e-24 Score=205.33 Aligned_cols=214 Identities=14% Similarity=0.083 Sum_probs=162.0
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc------CCCCceEEEeEEEEcCCCCccccccCceeeeeEecC
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPK 102 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~ 102 (317)
.+.+|+++.......+..++.++.++.++-..++...- +.-..|+++||.|.|.....- +..||++|++
T Consensus 274 flr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~~q~~p~~~~lelrnvrfay~~~~Fh-----vgPiNl~ikr 348 (546)
T COG4615 274 FLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPRPQAFPDWKTLELRNVRFAYQDNAFH-----VGPINLTIKR 348 (546)
T ss_pred HHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCCCCcCCcccceeeeeeeeccCcccce-----ecceeeEEec
Confidence 57899999999999999999999999876543322111 122359999999999776543 8899999999
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHH
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRC 182 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~ 182 (317)
||++-|+|.||||||||+++|.|+|+ |++|+|++||++ +...+++.+|+.
T Consensus 349 GelvFliG~NGsGKST~~~LLtGL~~-----PqsG~I~ldg~p----------------------V~~e~ledYR~L--- 398 (546)
T COG4615 349 GELVFLIGGNGSGKSTLAMLLTGLYQ-----PQSGEILLDGKP----------------------VSAEQLEDYRKL--- 398 (546)
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccC-----CCCCceeECCcc----------------------CCCCCHHHHHHH---
Confidence 99999999999999999999999999 999999999998 667778888887
Q ss_pred hhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCC-CcccCCC-CCCEEEEeccchhcCcHHHH
Q 021147 183 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNC-PYLSFRD-DKPVVVVTHGDLLSLTDRAR 260 (317)
Q Consensus 183 ~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l-~~~~l~~-~~~~~i~~hg~~~~LSgG~~ 260 (317)
++-|+.|.++|+... + .... ...+.+..-++.+.+ +...+.+ .... ..||-|||
T Consensus 399 ----fSavFsDyhLF~~ll--------~-~e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~--------~kLStGQk 454 (546)
T COG4615 399 ----FSAVFSDYHLFDQLL--------G-PEGK---ASPQLIEKWLQRLELAHKTSLNDGRFSN--------LKLSTGQK 454 (546)
T ss_pred ----HHHHhhhHhhhHhhh--------C-CccC---CChHHHHHHHHHHHHhhhhcccCCcccc--------cccccchH
Confidence 676777776665310 1 1110 111223333444333 2222322 2333 68999999
Q ss_pred HhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 261 IRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 261 qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
+|+++--|++.+-++++|||=.+ -||.-++.+.+.+--+++
T Consensus 455 KRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK 496 (546)
T COG4615 455 KRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLK 496 (546)
T ss_pred HHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHH
Confidence 99999999999999999999999 999999998876655443
No 369
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.92 E-value=8e-25 Score=232.45 Aligned_cols=196 Identities=14% Similarity=0.132 Sum_probs=155.5
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
..+.++|+++.|+....+ ++++||.|++||+.|+.|+|||||||++|+|.|... |++|+++++|.+
T Consensus 563 ~~~~~~~L~k~y~~~~~A-----v~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~-----~t~G~a~i~g~~---- 628 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGA-----VRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK-----PTSGEALIKGHD---- 628 (885)
T ss_pred ceEEEcceeeeecchhhh-----hcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc-----CCcceEEEecCc----
Confidence 468999999999766533 999999999999999999999999999999999999 999999998876
Q ss_pred eEecccCCCCcccccceeecc-CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC-hHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS-DVEKQYNQIV 227 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~ 227 (317)
+.. .+....++. +||+||.-.++. .+|.+|.+.+......-. +.-.+.+..+
T Consensus 629 ------------------i~~~~~~~~~~~~-------iGyCPQ~d~l~~-~lT~rEhL~~~arlrG~~~~di~~~v~~l 682 (885)
T KOG0059|consen 629 ------------------ITVSTDFQQVRKQ-------LGYCPQFDALWE-ELTGREHLEFYARLRGLPRSDIGSAIEKL 682 (885)
T ss_pred ------------------cccccchhhhhhh-------cccCCchhhhhh-hccHHHHHHHHHHHcCCChhHHHHHHHHH
Confidence 222 233335555 999999865444 689999998765433322 2334447778
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHhc---
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEHA--- 303 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~~--- 303 (317)
++.+++.... ..++ ..+|||+|.|+..|-|++.+|++++||||++ +||.+++.+.+++.++.++.
T Consensus 683 l~~~~L~~~~---~~~~--------~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~ai 751 (885)
T KOG0059|consen 683 LRLVGLGPYA---NKQV--------RTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAI 751 (885)
T ss_pred HHHcCChhhh---ccch--------hhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 9998873222 2334 7999999999999999999999999999999 99999999999999998753
Q ss_pred ---CCCcchhhcccCC
Q 021147 304 ---DRNLSCKSCARNK 316 (317)
Q Consensus 304 ---~~~~~~~~~~~~~ 316 (317)
.|...-.+.+|||
T Consensus 752 iLTSHsMeE~EaLCtR 767 (885)
T KOG0059|consen 752 ILTSHSMEEAEALCTR 767 (885)
T ss_pred EEEcCCHHHHHHHhhh
Confidence 3444445555555
No 370
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.90 E-value=2e-23 Score=189.22 Aligned_cols=83 Identities=14% Similarity=0.188 Sum_probs=63.0
Q ss_pred HHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceecccc--ceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 224 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPP--AKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 224 ~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p--~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+.++++.+++.... . +... .+|||||+||+++|||++.+| +++||||||+ ||+.+...+.+.++++.
T Consensus 117 ~~~~l~~~~l~~~~-~-~~~~--------~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~ 186 (226)
T cd03270 117 RLGFLVDVGLGYLT-L-SRSA--------PTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLR 186 (226)
T ss_pred HHHHHHHCCCCccc-c-cCcc--------CcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 35677888874211 1 2233 689999999999999999998 5999999999 99999999999999875
Q ss_pred Hh------cCCCcchhhcccCCC
Q 021147 301 EH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 301 ~~------~~~~~~~~~~~~~~~ 317 (317)
+. ..|+...+. .+|||
T Consensus 187 ~~g~tii~itH~~~~~~-~~d~i 208 (226)
T cd03270 187 DLGNTVLVVEHDEDTIR-AADHV 208 (226)
T ss_pred hCCCEEEEEEeCHHHHH-hCCEE
Confidence 42 445555543 56653
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.88 E-value=7.1e-24 Score=188.45 Aligned_cols=159 Identities=14% Similarity=0.141 Sum_probs=106.2
Q ss_pred c-eeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCC----CCCcCcEEEECcccCceeeEecccCCCCccccccee
Q 021147 93 M-TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK----FASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELV 167 (317)
Q Consensus 93 L-~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~----~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~ 167 (317)
+ ++++|++.+| +++|+||||||||||+++|+|+..+.. ..+..|++.++|++
T Consensus 12 ~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------- 68 (197)
T cd03278 12 FADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSE---------------------- 68 (197)
T ss_pred cCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCC----------------------
Confidence 5 6799999999 999999999999999999999987210 01122334444432
Q ss_pred eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEE
Q 021147 168 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVV 247 (317)
Q Consensus 168 ~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~ 247 (317)
... ...+ .+|++++|++..+. ... ...++.++++..+ .. ....
T Consensus 69 ~~~---~~~~-------~~v~~vfq~~~~~~-----------~~~-------~~~~~~~~l~~~~-----~~-~~~~--- 111 (197)
T cd03278 69 TRK---PANF-------AEVTLTFDNSDGRY-----------SII-------SQGDVSEIIEAPG-----KK-VQRL--- 111 (197)
T ss_pred CCC---CCce-------EEEEEEEEcCCCce-----------eEE-------ehhhHHHHHhCCC-----cc-ccch---
Confidence 111 0111 23999999886541 100 0123445555411 11 2233
Q ss_pred eccchhcCcHHHHHhhcccceec----cccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 248 THGDLLSLTDRARIRTYLGELLG----IPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 248 ~hg~~~~LSgG~~qRl~iaral~----~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
.+||+||+||+++|++++ ..|++++||||++ ||+.+...+.+.++++.+. ..|+...+ ..+|++
T Consensus 112 -----~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~-~~~d~v 185 (197)
T cd03278 112 -----SLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTM-EAADRL 185 (197)
T ss_pred -----hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHH-hhcceE
Confidence 689999999999999986 4669999999999 9999999999999987431 34444443 345553
No 372
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.88 E-value=9.3e-23 Score=175.35 Aligned_cols=171 Identities=16% Similarity=0.173 Sum_probs=133.6
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
++.++||+..- . |-.+|.++..||++-+|||||||||||+-.++|+. |.+|+|.++|.+
T Consensus 3 l~qln~v~~~t----R------L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~------~~sGsi~~~G~~----- 61 (248)
T COG4138 3 LMQLNDVAEST----R------LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT------SGSGSIQFAGQP----- 61 (248)
T ss_pred eeeeccccccc----c------ccccccccccceEEEEECCCCccHHHHHHHHhCCC------CCCceEEECCcc-----
Confidence 57788887533 2 66799999999999999999999999999999998 679999999997
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+..+...++.++ -+|+.|... -.+.+-|+..+.+..+ .+....++.+++..
T Consensus 62 -----------------l~~~~~~eLArh-------RAYLsQqq~-p~f~mpV~~YL~L~qP----~~~~a~~i~~i~~~ 112 (248)
T COG4138 62 -----------------LEAWSATELARH-------RAYLSQQQT-PPFAMPVWHYLTLHQP----DKTRTELLNDVAGA 112 (248)
T ss_pred -----------------hhHHhHhHHHHH-------HHHHhhccC-CcchhhhhhhhhhcCc----hHHHHHHHHHHHhh
Confidence 666776667666 677766443 2234567777664322 13445568889999
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceecc-----cc--ceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGI-----PP--AKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~-----~p--~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
+++.... +..+ .+|||||.||+.+|-.+.. || +++++|||.+ ||...+..+-..+.+++..
T Consensus 113 L~l~DKL---~Rs~--------~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~ 181 (248)
T COG4138 113 LALDDKL---GRST--------NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ 181 (248)
T ss_pred hcccchh---hhhh--------hhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhC
Confidence 9885332 4555 7999999999999988874 44 6899999999 9999999999998888754
No 373
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.88 E-value=1e-22 Score=200.71 Aligned_cols=180 Identities=16% Similarity=0.101 Sum_probs=135.6
Q ss_pred CCceEEEeEEEEcCC-CCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 69 GSLTDAKNKILSYTP-GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 69 ~~~I~~~nls~~y~~-~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
...|++++|++.-|+ +... ++|+||+|+.|+.+.|.||||||||+|+|.|.||++ ..+|++..-.+.
T Consensus 431 Dn~i~~e~v~l~tPt~g~~l-----ie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp-----~~~G~l~k~~~~-- 498 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTNGDLL-----IENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP-----STGGKLTKPTDG-- 498 (659)
T ss_pred cceEEeeeeeecCCCCCcee-----eeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc-----cCCCeEEecccC--
Confidence 357999999999987 4443 888999999999999999999999999999999999 899999854432
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc--cCCCChHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS--MEGDSDVEKQYNQ 225 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~--~~~~~~~~~~~~~ 225 (317)
.+ +.+=|+||.|....+ |++|.+-+... +........+.+.
T Consensus 499 -----------------------~~------------~~lfflPQrPYmt~G--TLRdQvIYP~~~~~~~~~~~~d~~i~ 541 (659)
T KOG0060|consen 499 -----------------------GP------------KDLFFLPQRPYMTLG--TLRDQVIYPLKAEDMDSKSASDEDIL 541 (659)
T ss_pred -----------------------CC------------CceEEecCCCCcccc--chhheeeccCccccccccCCCHHHHH
Confidence 00 015567777653333 66776655421 1222233445677
Q ss_pred HHHHHcCC-CcccCCCCCCEEEEec-cchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 226 IVATTFNC-PYLSFRDDKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 226 ~~a~~~~l-~~~~l~~~~~~~i~~h-g~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
..++.+++ ++.....|.+..+.-. . ..||+||+||++.||.+++.|+.-||||.|| +|...|..+...+++.
T Consensus 542 r~Le~v~L~hl~~r~ggld~~~~~dW~--dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~ 616 (659)
T KOG0060|consen 542 RILENVQLGHLLEREGGLDQQVDWDWM--DVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM 616 (659)
T ss_pred HHHHHhhhhhHHHHhCCCCchhhccHH--hhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc
Confidence 77887777 4444444665332222 3 4799999999999999999999999999999 9999999999888775
No 374
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.87 E-value=6.6e-22 Score=182.90 Aligned_cols=203 Identities=16% Similarity=0.171 Sum_probs=122.2
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHh-----hcccCCCCCCcCcEEEECccc-CceeeEecccCCC-C--cc-c
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS-----KVFENDKFASERAQVTYNSSV-GDGTYFLQEYTIP-R--GV-R 162 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~-----Gl~~p~~~~p~~G~I~i~g~~-~~~~~~~Q~~~l~-~--~~-~ 162 (317)
|+|||++|+.|..++|+|.||||||||++.+. ..+......|..++...+... ..+-++-|.+.-. + ++ +
T Consensus 11 l~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~t 90 (261)
T cd03271 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPAT 90 (261)
T ss_pred CCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHHH
Confidence 99999999999999999999999999998652 211110011333332222111 1122333332100 0 00 0
Q ss_pred -cc------ceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCc
Q 021147 163 -HG------ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPY 235 (317)
Q Consensus 163 -~~------~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 235 (317)
.+ .+....-.-..+.... -.+.|..++...+ ..+|+.|++.|..... ..++..++++.+++..
T Consensus 91 y~~~~~~ir~~fC~~C~G~r~~~~~----l~~~~~g~~i~~v-~~ltv~e~~~~~~~~~-----~~~~~~~~L~~vgL~~ 160 (261)
T cd03271 91 YTGVFDEIRELFCEVCKGKRYNRET----LEVRYKGKSIADV-LDMTVEEALEFFENIP-----KIARKLQTLCDVGLGY 160 (261)
T ss_pred HHHHHHHHHHhcCccccccccCHHH----HhcCcCCCCHHHH-hcCCHHHHHHHHHhhh-----hHHHHHHHHHHcCCch
Confidence 00 0000000000011111 1166766655433 3679999998765432 1345677888888743
Q ss_pred ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccc---cceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCC
Q 021147 236 LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIP---PAKQIFDIPES-SDPENELIIVDMLRYCLEH------ADR 305 (317)
Q Consensus 236 ~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~---p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~ 305 (317)
..+ +... .+|||||+||+++||+|..+ |+++||||||+ ||+.....+.+.++++.+. ..|
T Consensus 161 l~l--~~~~--------~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH 230 (261)
T cd03271 161 IKL--GQPA--------TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEH 230 (261)
T ss_pred hhh--cCcc--------ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 111 3444 78999999999999999996 79999999999 9999999999999998642 455
Q ss_pred CcchhhcccCC
Q 021147 306 NLSCKSCARNK 316 (317)
Q Consensus 306 ~~~~~~~~~~~ 316 (317)
++..+. .+|+
T Consensus 231 ~~~~i~-~aD~ 240 (261)
T cd03271 231 NLDVIK-CADW 240 (261)
T ss_pred CHHHHH-hCCE
Confidence 555553 3554
No 375
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.87 E-value=1.6e-22 Score=198.13 Aligned_cols=186 Identities=15% Similarity=0.190 Sum_probs=136.3
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
+.+.|-+.||+|.|.++..+ +++++|-|..++.+|+|||||||||||+|+++|.+. |+.|.|.-.-..
T Consensus 386 p~pvi~~~nv~F~y~~~~~i-----y~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~-----p~~G~vs~~~H~-- 453 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNPMI-----YKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ-----PTIGMVSRHSHN-- 453 (614)
T ss_pred CCCeEEEeccccCCCCcchh-----hhhhhcccCcccceeEecCCCCchhhhHHHHhhccc-----cccccccccccc--
Confidence 35679999999999877554 999999999999999999999999999999999999 999998844332
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 227 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~ 227 (317)
.+. .+.++..+ | +....+..++.. ..++. ....+.+..+
T Consensus 454 ----------------------~~~--~y~Qh~~e---------~----ldl~~s~le~~~--~~~~~--~~~~e~~r~i 492 (614)
T KOG0927|consen 454 ----------------------KLP--RYNQHLAE---------Q----LDLDKSSLEFMM--PKFPD--EKELEEMRSI 492 (614)
T ss_pred ----------------------cch--hhhhhhHh---------h----cCcchhHHHHHH--Hhccc--cchHHHHHHH
Confidence 011 11222100 0 111223444432 22222 2234557788
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH---hc
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE---HA 303 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~---~~ 303 (317)
+..+|+.-. ....++ .+||+|||.||.+|+.....|.+|||||||+ ||..+...+.++|.++-- ..
T Consensus 493 lgrfgLtgd--~q~~p~--------~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~v 562 (614)
T KOG0927|consen 493 LGRFGLTGD--AQVVPM--------SQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLV 562 (614)
T ss_pred HHHhCCCcc--ccccch--------hhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeee
Confidence 999997411 124555 7999999999999999999999999999999 999999999999988632 14
Q ss_pred CCCcchhhcccCC
Q 021147 304 DRNLSCKSCARNK 316 (317)
Q Consensus 304 ~~~~~~~~~~~~~ 316 (317)
+|++..++.++++
T Consensus 563 SHDfrlI~qVaeE 575 (614)
T KOG0927|consen 563 SHDFRLISQVAEE 575 (614)
T ss_pred echhhHHHHHHHH
Confidence 5666666666654
No 376
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.86 E-value=1.8e-22 Score=183.96 Aligned_cols=188 Identities=15% Similarity=0.119 Sum_probs=105.8
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCC--Cc-CcEEEECccc---
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFA--SE-RAQVTYNSSV--- 145 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~--p~-~G~I~i~g~~--- 145 (317)
|+++|.. +|++... +.+++ |++++|+||||||||||+++|++++...... +. .+.+...|..
T Consensus 4 i~~~nfk-sy~~~~~------~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~ 71 (243)
T cd03272 4 VIIQGFK-SYKDQTV------IEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSV 71 (243)
T ss_pred EEEeCcc-CcccCcc------cccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCC
Confidence 4555543 3654432 66666 7899999999999999999999776411000 00 0122222221
Q ss_pred --CceeeEecccC-CCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCCh----
Q 021147 146 --GDGTYFLQEYT-IPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD---- 218 (317)
Q Consensus 146 --~~~~~~~Q~~~-l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~---- 218 (317)
..+.++||++. .++... +...++ +.+|+++|+..+.....|..+...+.........
T Consensus 72 ~~~~v~i~~~~~~~~~~~~~---------~~~~i~-------r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~ 135 (243)
T cd03272 72 MSAYVEIIFDNSDNRFPIDK---------EEVRLR-------RTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYY 135 (243)
T ss_pred ceEEEEEEEEcCCCccCCCC---------CEEEEE-------EEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcE
Confidence 12344555421 111000 000111 2288888877655433454444333322111000
Q ss_pred -HHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceec----cccceeeccCCCC-CCHHHHHHH
Q 021147 219 -VEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLG----IPPAKQIFDIPES-SDPENELII 292 (317)
Q Consensus 219 -~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~----~~p~ilIlDEPts-LD~~t~~~l 292 (317)
..+.++.++ +.+.... +... ..||+||+||+++|||++ .+|+++||||||+ ||+.+...+
T Consensus 136 ~~~qg~i~~l---~~l~~~~---~~~~--------~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~ 201 (243)
T cd03272 136 IVPQGKINSL---TNMKQDE---QQEM--------QQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAV 201 (243)
T ss_pred EEEcCchHHh---hhccccc---cccc--------cccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHH
Confidence 001112222 2211000 1222 689999999999999996 3689999999999 999999999
Q ss_pred HHHHHHHHH
Q 021147 293 VDMLRYCLE 301 (317)
Q Consensus 293 ~~~l~~l~~ 301 (317)
.+.++++.+
T Consensus 202 ~~~l~~~~~ 210 (243)
T cd03272 202 ANMIKELSD 210 (243)
T ss_pred HHHHHHHhC
Confidence 999998743
No 377
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.85 E-value=1.4e-21 Score=172.61 Aligned_cols=212 Identities=15% Similarity=0.134 Sum_probs=148.0
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|+.+.++|++..+...+. .+++++++|+++++||+-++||+||||||..+|.|+|..+.. -..+..+.++++.+
T Consensus 1 M~LLDIrnL~IE~~TsqG--~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdn-W~vTADR~Rf~~id--- 74 (330)
T COG4170 1 MPLLDIRNLTIEFKTSQG--WVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDN-WRVTADRMRFDDID--- 74 (330)
T ss_pred CCcccccceEEEEecCCC--ceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccc-eEEEhhhcccccch---
Confidence 467899999999854332 234599999999999999999999999999999999998621 11234445544443
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHH----HHHHhhh---ccCCCChHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVV----DGLAVLK---SMEGDSDVE 220 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~----eni~~~~---~~~~~~~~~ 220 (317)
+-.+++++.|+. +-+.|+++||+|. -+.+..+|. +||-... .+-.-..-.
T Consensus 75 -------------------LL~L~Pr~RRk~---ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~Wr 132 (330)
T COG4170 75 -------------------LLRLSPRERRKL---VGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWR 132 (330)
T ss_pred -------------------hhcCChHHhhhh---hccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchh
Confidence 445666555543 3345888899875 333333332 2331110 000001123
Q ss_pred HHHHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 221 KQYNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 221 ~~~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
.++..+++..+|+. .......|+ .+|..|+-|++.||.|++..|+++|.||||+ +++.|+..++.++.+
T Consensus 133 KrrAIeLLHrVGIKdHkDIM~SYP---------~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~ 203 (330)
T COG4170 133 KRRAIELLHRVGIKDHKDIMRSYP---------YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSR 203 (330)
T ss_pred HHHHHHHHHHhccccHHHHHHhCc---------chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHH
Confidence 45677889999982 111122577 4999999999999999999999999999999 999999999999998
Q ss_pred HHHh-------cCCCcchhhcccCCC
Q 021147 299 CLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 299 l~~~-------~~~~~~~~~~~~~~~ 317 (317)
+.+. -+|++...+.-+|++
T Consensus 204 mNQn~~TtILL~s~Dl~~is~W~d~i 229 (330)
T COG4170 204 LNQNSNTTILLISHDLQMISQWADKI 229 (330)
T ss_pred hhccCCceEEEEcccHHHHHHHhhhe
Confidence 8654 456677777777764
No 378
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.85 E-value=3.3e-21 Score=204.51 Aligned_cols=166 Identities=16% Similarity=0.177 Sum_probs=136.0
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
|+|||=-++||..+||+|+||||||||+++|+|...-+ ..+|+|+++|.+ .+
T Consensus 807 L~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G---~I~Gdi~i~G~p-------------------------~~ 858 (1391)
T KOG0065|consen 807 LNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG---YIEGDILISGFP-------------------------KD 858 (1391)
T ss_pred hhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc---eEEeEEEECCee-------------------------Cc
Confidence 99999999999999999999999999999999997633 678999999986 22
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhh--ccCCC--ChHHHHHHHHHHHHcCCCcccCCCCCCEEEEe
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK--SMEGD--SDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 248 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~--~~~~~--~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~ 248 (317)
.+.+++. +|||.|+.. ....+||+|-+.|.. +.+.+ .++..+.++++++.++++.. .+.+||.
T Consensus 859 q~tF~R~-------~GYvqQ~Di-H~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-----~daiVG~ 925 (1391)
T KOG0065|consen 859 QETFARV-------SGYVEQQDI-HSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-----ADALVGL 925 (1391)
T ss_pred hhhhccc-------cceeecccc-cCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-----hhhhccC
Confidence 2455555 999988653 346789999998754 22332 23444778889999987422 3456677
Q ss_pred ccchhcCcHHHHHhhcccceecccc-ceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 249 HGDLLSLTDRARIRTYLGELLGIPP-AKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 249 hg~~~~LSgG~~qRl~iaral~~~p-~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
-| ..||..||+|+.||--|+.+| .++.|||||| ||..+...++++++++..
T Consensus 926 ~G--~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~ 978 (1391)
T KOG0065|consen 926 PG--SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD 978 (1391)
T ss_pred CC--CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh
Confidence 67 789999999999999999999 8999999999 999999999999999865
No 379
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.85 E-value=2.4e-22 Score=184.62 Aligned_cols=162 Identities=15% Similarity=0.105 Sum_probs=100.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhcccCCCCCCc-CcEEEECcc-cCceeeEecccCCCCcccccceeeccCChHHHHHHH
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSS-VGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRM 180 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~-~G~I~i~g~-~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~ 180 (317)
..+++||||||||||||+++|++++. +. .|++++.+. +. +..-.....+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~-----~~~~~~~r~~~~~~l---------------------i~~~~~~~~~--- 75 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLG-----ITNLSTVRASNLQDL---------------------IYKRGQAGIT--- 75 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-----ccccccccccCHHHH---------------------hhcCCCCCCc---
Confidence 46899999999999999999999998 65 457776654 10 0000000000
Q ss_pred HHhhhhccccccccc--------cccchhhHHHHHHhhhc--c-CCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEE--
Q 021147 181 RCKAHKIGCEPSVIR--------KVNFVIFVVDGLAVLKS--M-EGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVV-- 247 (317)
Q Consensus 181 ~~~~~~ig~v~Q~~~--------~~~~~~tv~eni~~~~~--~-~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~-- 247 (317)
...|++++|++. -+...+||.+++..... + ........+++.++++.++++... ...+|-
T Consensus 76 ---~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~----~~~~i~Qg 148 (251)
T cd03273 76 ---KASVTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNN----PHFLIMQG 148 (251)
T ss_pred ---EEEEEEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCC----ceEEEeeh
Confidence 012556665531 11223455555543211 1 011122335677777887763110 000000
Q ss_pred -----------eccchhcCcHHHHHhhcccceec----cccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 248 -----------THGDLLSLTDRARIRTYLGELLG----IPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 248 -----------~hg~~~~LSgG~~qRl~iaral~----~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
.+....+||+||+||+++|||++ .+|+++|+||||+ ||+.+...+.+.++++.
T Consensus 149 ~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~ 217 (251)
T cd03273 149 RITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF 217 (251)
T ss_pred HHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc
Confidence 00012689999999999999997 5789999999999 99999999999999874
No 380
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.84 E-value=1.7e-21 Score=174.84 Aligned_cols=177 Identities=15% Similarity=0.097 Sum_probs=106.1
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEec-CCCEEEEEcCCCChHHHHHHHHhh-cccCCCCCCcCcEEEECcccCce
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVP-KTTSLLLIGPKGSGKSSLVNRISK-VFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~-~Ge~vaIvG~SGsGKSTLlklL~G-l~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.|+++|+. .|.+. ++|+|+.. +|++++|+||||||||||+++|++ ++. +..+....+...
T Consensus 5 ~i~l~nf~-~y~~~---------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g-----~~~~~~~~~~~~--- 66 (213)
T cd03279 5 KLELKNFG-PFREE---------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG-----KTPRYGRQENLR--- 66 (213)
T ss_pred EEEEECCc-CcCCc---------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec-----CccccccchhHH---
Confidence 47888888 66443 33667654 589999999999999999999996 444 444443322100
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHH-
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV- 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~- 227 (317)
..+..... ...|++++|....... +.. +...... ...+.
T Consensus 67 --------------------~~~~~~~~-------~~~v~~~f~~~~~~~~---~~r-------~~gl~~~---~~~~~~ 106 (213)
T cd03279 67 --------------------SVFAPGED-------TAEVSFTFQLGGKKYR---VER-------SRGLDYD---QFTRIV 106 (213)
T ss_pred --------------------HHhcCCCc-------cEEEEEEEEECCeEEE---EEE-------ecCCCHH---HHHHhh
Confidence 00000001 1226777665432111 100 1111110 11111
Q ss_pred -HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceecc----------ccceeeccCCCC-CCHHHHHHHHHH
Q 021147 228 -ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGI----------PPAKQIFDIPES-SDPENELIIVDM 295 (317)
Q Consensus 228 -a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~----------~p~ilIlDEPts-LD~~t~~~l~~~ 295 (317)
+....+.. .. .... ..||+||+||+++|||++. +|+++|||||++ ||+.+...+.+.
T Consensus 107 ~l~~g~l~~--~l-~~~~--------~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~ 175 (213)
T cd03279 107 LLPQGEFDR--FL-ARPV--------STLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATA 175 (213)
T ss_pred hhhhcchHH--Hh-cCCc--------cccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 11111110 00 1222 6899999999999999975 568999999999 999999999999
Q ss_pred HHHHHHh------cCCCcchhhcccCC
Q 021147 296 LRYCLEH------ADRNLSCKSCARNK 316 (317)
Q Consensus 296 l~~l~~~------~~~~~~~~~~~~~~ 316 (317)
++++.+. ..|+.+.+..++|+
T Consensus 176 l~~~~~~~~tii~itH~~~~~~~~~~~ 202 (213)
T cd03279 176 LELIRTENRMVGVISHVEELKERIPQR 202 (213)
T ss_pred HHHHHhCCCEEEEEECchHHHHhhCcE
Confidence 9988642 44555555555554
No 381
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.83 E-value=2.1e-20 Score=184.62 Aligned_cols=195 Identities=13% Similarity=0.176 Sum_probs=145.2
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.+.++++|++..- . ++|+||++.+||++||.|-=|||+|=|+++|.|..+ +.+|+|.++|++
T Consensus 261 ~~~l~v~~l~~~~----~------~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~-----~~~G~i~l~G~~--- 322 (500)
T COG1129 261 EPVLEVRNLSGGG----K------VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP-----ASSGEILLDGKP--- 322 (500)
T ss_pred CcEEEEecCCCCC----c------eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc-----CCCceEEECCEE---
Confidence 4568888888432 2 899999999999999999999999999999999888 899999999997
Q ss_pred eeEecccCCCCcccccceeeccCCh-HHHHHHHHHhhhhccccccccc--cccchhhHHHHHHhhh--ccC----CCChH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDS-SSLRNRMRCKAHKIGCEPSVIR--KVNFVIFVVDGLAVLK--SME----GDSDV 219 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~ig~v~Q~~~--~~~~~~tv~eni~~~~--~~~----~~~~~ 219 (317)
+.-.++ +.++. .|+|||.|.. -+...++|.+|+.+.. .+. .+...
T Consensus 323 -------------------v~~~sp~~Ai~~-------Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~ 376 (500)
T COG1129 323 -------------------VRIRSPRDAIKA-------GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRK 376 (500)
T ss_pred -------------------ccCCCHHHHHHc-------CCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHH
Confidence 222222 23333 4999998764 1233578999997652 111 11222
Q ss_pred HHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 220 EKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 220 ~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
.++......+.+++-... ...++ ..||||-+||+.|||.|+.+|+++||||||. +|.-++..|.++|++
T Consensus 377 e~~~~~~~~~~l~Ik~~s--~~~~v--------~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~ 446 (500)
T COG1129 377 ERALAERYIRRLRIKTPS--PEQPI--------GTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRE 446 (500)
T ss_pred HHHHHHHHHHhcCcccCC--ccchh--------hcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHH
Confidence 233445566666652111 13444 7999999999999999999999999999999 999999999999999
Q ss_pred HHHh------cCCCcchhhcccCCC
Q 021147 299 CLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 299 l~~~------~~~~~~~~~~~~~~~ 317 (317)
+.+. .+.++.=+-.+||||
T Consensus 447 lA~~G~ail~iSSElpEll~~~DRI 471 (500)
T COG1129 447 LAAEGKAILMISSELPELLGLSDRI 471 (500)
T ss_pred HHHCCCEEEEEeCChHHHHhhCCEE
Confidence 8654 233455555677765
No 382
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.81 E-value=3.3e-21 Score=173.27 Aligned_cols=48 Identities=15% Similarity=0.219 Sum_probs=44.3
Q ss_pred hcCcHHHHHhhcccceecc----ccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGI----PPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~----~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
..||+||+||+++|||++. .|+++++||||+ ||+.+...+.+.++++.
T Consensus 126 ~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~ 178 (212)
T cd03274 126 SNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT 178 (212)
T ss_pred hhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc
Confidence 6899999999999999964 579999999999 99999999999999874
No 383
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=6.3e-20 Score=176.22 Aligned_cols=165 Identities=18% Similarity=0.185 Sum_probs=116.2
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
+.+-+.+|+|.|++..+. ++.++|-|.--..+|||||||.|||||+++|.|-+. |+.|+.+-+.. ..+|
T Consensus 585 PvLGlH~VtFgy~gqkpL-----FkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~-----P~~GE~RKnhr-L~iG 653 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQKPL-----FKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD-----PNDGELRKNHR-LRIG 653 (807)
T ss_pred CeeecccccccCCCCCch-----hhcccccccccceeEEECCCCccHHHHHHHHhcCCC-----CCcchhhccce-eeee
Confidence 578999999999877765 899999999999999999999999999999999999 99998874432 3344
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
|+-|.++= -+...-|-.+.+.-.-..+. +.....+-
T Consensus 654 ~FdQh~~E--------------------------------------~L~~Eetp~EyLqr~FNlpy------q~ARK~LG 689 (807)
T KOG0066|consen 654 WFDQHANE--------------------------------------ALNGEETPVEYLQRKFNLPY------QEARKQLG 689 (807)
T ss_pred chhhhhHH--------------------------------------hhccccCHHHHHHHhcCCCh------HHHHHHhh
Confidence 44443210 00000111122211100111 01223333
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
.+|+. ...+-..+ ..|||||+-|+++|..-+..|+++||||||+ ||.++...+.++|.++
T Consensus 690 ~fGL~--sHAHTiki--------kdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney 750 (807)
T KOG0066|consen 690 TFGLA--SHAHTIKI--------KDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY 750 (807)
T ss_pred hhhhh--hccceEee--------eecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc
Confidence 44431 11112223 6899999999999999999999999999999 9999999999999886
No 384
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.79 E-value=1.5e-19 Score=174.33 Aligned_cols=177 Identities=17% Similarity=0.268 Sum_probs=118.7
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+++...++++|++-+ |.==.=+|..||+++++||||-||||++|+|+|.++ |++|+ ..+..
T Consensus 342 lv~y~~~~k~~g~F~-------L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik-----Pdeg~----~~~~~--- 402 (591)
T COG1245 342 LVEYPDLKKTYGDFK-------LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK-----PDEGS----EEDLK--- 402 (591)
T ss_pred eeecchheeecCceE-------EEecCCeeecceEEEEECCCCcchHHHHHHHhcccc-----CCCCC----Cccce---
Confidence 455555666664321 222333567789999999999999999999999999 99987 23333
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
|+|-||-.. -....||.+-+.-........+ --..++++-
T Consensus 403 ------------------------------------vSyKPQyI~-~~~~gtV~~~l~~~~~~~~~~s---~~~~ei~~p 442 (591)
T COG1245 403 ------------------------------------VSYKPQYIS-PDYDGTVEDLLRSAIRSAFGSS---YFKTEIVKP 442 (591)
T ss_pred ------------------------------------Eeecceeec-CCCCCcHHHHHHHhhhhhcccc---hhHHhhcCc
Confidence 444444221 1123455554432221111111 112355555
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------- 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------- 302 (317)
++++... ..++ ..||||+.||++||-+|.+++++.+||||++ ||.+.+..+...|++..+.
T Consensus 443 l~l~~i~---e~~v--------~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~v 511 (591)
T COG1245 443 LNLEDLL---ERPV--------DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALV 511 (591)
T ss_pred cchHHHH---hccc--------ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEE
Confidence 6653221 2344 6899999999999999999999999999999 9999999999999998765
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
-+|++.+..-+.||+
T Consensus 512 VdHDi~~~dyvsDr~ 526 (591)
T COG1245 512 VDHDIYMIDYVSDRL 526 (591)
T ss_pred EecceehhhhhhceE
Confidence 466777666666653
No 385
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.79 E-value=7.9e-20 Score=178.65 Aligned_cols=175 Identities=15% Similarity=0.145 Sum_probs=113.6
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|.++|+-.--|.++.+ +..++|+|++|-.+.|+||||||||+|+|+|.|+++ ...|...+= .+..+-|+
T Consensus 482 I~lenIpvItP~~~vv-----v~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP-----vy~g~L~~P-~~~~mFYI 550 (728)
T KOG0064|consen 482 IILENIPVITPAGDVL-----VPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP-----VYNGLLSIP-RPNNIFYI 550 (728)
T ss_pred eEEecCceeccCccee-----ecceeEEecCCceEEEECCCCccHHHHHHHHhccCc-----ccCCeeecC-CCcceEec
Confidence 8888888877777665 899999999999999999999999999999999998 666654422 12235555
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHc
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF 231 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~ 231 (317)
||.|.+-.+ +..+..+-..+.+++++ =||-.| ..++++..+
T Consensus 551 PQRPYms~g-tlRDQIIYPdS~e~~~~--------kg~~d~------------------------------dL~~iL~~v 591 (728)
T KOG0064|consen 551 PQRPYMSGG-TLRDQIIYPDSSEQMKR--------KGYTDQ------------------------------DLEAILDIV 591 (728)
T ss_pred cCCCccCcC-cccceeecCCcHHHHHh--------cCCCHH------------------------------HHHHHHHHh
Confidence 555433211 11111111112222221 122222 244444444
Q ss_pred CCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 232 NCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 232 ~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
.++ +.....|.+.+--- - ..||||+|||+++||.+++.|+..+|||.|| ..+..+..+.++.++.
T Consensus 592 ~L~~i~qr~~g~da~~dW-k--d~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~ 658 (728)
T KOG0064|consen 592 HLEHILQREGGWDAVRDW-K--DVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA 658 (728)
T ss_pred hHHHHHHhccChhhhccH-H--hhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhc
Confidence 442 11111121110000 1 3699999999999999999999999999999 8888889998887764
No 386
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.79 E-value=4.5e-19 Score=173.97 Aligned_cols=191 Identities=20% Similarity=0.180 Sum_probs=112.2
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
..+.++|+++.|.+... ++|++|++.+|+.+||+|+|||||||++++|.|-..|- |..=.++.-.++
T Consensus 74 ~dvk~~sls~s~~g~~l------~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~---p~~~d~y~ls~e---- 140 (614)
T KOG0927|consen 74 RDVKIESLSLSFHGVEL------IKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPI---PEHIDFYLLSRE---- 140 (614)
T ss_pred ccceeeeeeeccCCcee------eeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCC---Ccccchhhhccc----
Confidence 36999999999976643 99999999999999999999999999999999999843 222111111111
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhcccc-ccccccccchhhHHHHHH-hhhccCCCChHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE-PSVIRKVNFVIFVVDGLA-VLKSMEGDSDVEKQYNQIV 227 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v-~Q~~~~~~~~~tv~eni~-~~~~~~~~~~~~~~~~~~~ 227 (317)
+.|+...-- ..--......+.+.+...+...-- .+ .. .. -.+++. .+. ..+.+....++..+
T Consensus 141 -------~~ps~~~av-~~v~~~~~~e~~rle~~~E~l~~~~d~-~~-~~----~l~~~~~r~~--~~d~~~~~~k~~~i 204 (614)
T KOG0927|consen 141 -------IEPSEKQAV-QAVVMETDHERKRLEYLAEDLAQACDD-KE-KD----ELDELYERLD--EMDNDTFEAKAAKI 204 (614)
T ss_pred -------CCCchHHHH-HHHhhhhHHHHHHHHHHHHHHHhhccc-hh-hh----HHHHHHHHHH--hhCchhHHHHHHHH
Confidence 000000000 000001222233322222222110 11 00 00 011111 011 11122233445555
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
+.-++.... .. ...+ ..||||++.|+++||+|..+|.+|+|||||+ ||..+..-+-+.|.++
T Consensus 205 l~glgf~~~-m~-~k~~--------~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~ 267 (614)
T KOG0927|consen 205 LHGLGFLSE-MQ-DKKV--------KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY 267 (614)
T ss_pred HHhcCCCHh-HH-HHHh--------hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc
Confidence 555554211 11 2334 7999999999999999999999999999999 9999988776666554
No 387
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.78 E-value=3.1e-18 Score=166.93 Aligned_cols=202 Identities=14% Similarity=0.156 Sum_probs=150.4
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
..+.++++||+..-..+... +++|||+|.+||++||.|-.|-|-+-|+.+|+|+.+ |.+|+|.++|++
T Consensus 254 g~~vL~V~~L~v~~~~~~~~-----v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~-----~~~G~I~l~G~~-- 321 (501)
T COG3845 254 GEVVLEVEDLSVKDRRGVTA-----VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK-----PASGRILLNGKD-- 321 (501)
T ss_pred CCeEEEEeeeEeecCCCCce-----eeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc-----cCCceEEECCEe--
Confidence 35689999999877544333 999999999999999999999999999999999998 888999999987
Q ss_pred eeeEecccCCCCcccccceee-ccCChHHHHHHHHHhhhhccccccccc--cccchhhHHHHHHhhhccC----CC----
Q 021147 148 GTYFLQEYTIPRGVRHGELVI-RRSDSSSLRNRMRCKAHKIGCEPSVIR--KVNFVIFVVDGLAVLKSME----GD---- 216 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~ig~v~Q~~~--~~~~~~tv~eni~~~~~~~----~~---- 216 (317)
+ ..+++..+++. .++|+|.|.. -+-..+|+++|+.+..... ..
T Consensus 322 --------------------v~~~~~~~~~r~~------G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~ 375 (501)
T COG3845 322 --------------------VLGRLSPRERRRL------GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLD 375 (501)
T ss_pred --------------------ccccCCHHHHHhc------CCccCChhhccCccccCccHHHHhhhhhccccccccccccC
Confidence 3 34566555543 4999999874 2334579999998754321 11
Q ss_pred ChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHH
Q 021147 217 SDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDM 295 (317)
Q Consensus 217 ~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~ 295 (317)
.+...+...++.+.+.+- .-....++ .+||||.+||+-+||-+..+|++||..+||- ||..+.+.+.+.
T Consensus 376 ~~~i~~~a~~li~~fdVr--~~~~~~~a--------~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~ 445 (501)
T COG3845 376 RRAIRKFARELIEEFDVR--APSPDAPA--------RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHER 445 (501)
T ss_pred HHHHHHHHHHHHHHcCcc--CCCCCcch--------hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHH
Confidence 122334445556665541 00112233 7999999999999999999999999999999 999999999999
Q ss_pred HHHHHHh------cCCCcchhhcccCCC
Q 021147 296 LRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 296 l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
|.+.... -+.++.-+-.++||+
T Consensus 446 l~e~r~~G~AVLLiS~dLDEil~lsDrI 473 (501)
T COG3845 446 LLELRDAGKAVLLISEDLDEILELSDRI 473 (501)
T ss_pred HHHHHhcCCEEEEEehhHHHHHHhhhee
Confidence 9887543 223355555555553
No 388
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.78 E-value=1e-19 Score=162.51 Aligned_cols=139 Identities=12% Similarity=0.149 Sum_probs=94.5
Q ss_pred eeeEecCCCEEEEEcCCCChHHHHHHHHh----hcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccC
Q 021147 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRIS----KVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRS 171 (317)
Q Consensus 96 isl~I~~Ge~vaIvG~SGsGKSTLlklL~----Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~ 171 (317)
.++++.+| +++|+||||||||||+++|. |... |..|.+..+... +..
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~-----~~~~~~~~~~~~----------------------i~~- 66 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP-----PNSKGGAHDPKL----------------------IRE- 66 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC-----cccccccchHHH----------------------HhC-
Confidence 34566677 99999999999999999995 7777 666665511110 000
Q ss_pred ChHHHHHHHHHhhhhccccccccc----cccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEE
Q 021147 172 DSSSLRNRMRCKAHKIGCEPSVIR----KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVV 247 (317)
Q Consensus 172 ~~~~~r~~~~~~~~~ig~v~Q~~~----~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~ 247 (317)
. . ....|++++|++. .....+++++|+.+.. +.++.+.+ ....
T Consensus 67 ~--~-------~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~~---------~~~~~~~~------------~~~~--- 113 (204)
T cd03240 67 G--E-------VRAQVKLAFENANGKKYTITRSLAILENVIFCH---------QGESNWPL------------LDMR--- 113 (204)
T ss_pred C--C-------CcEEEEEEEEeCCCCEEEEEEEhhHhhceeeec---------hHHHHHHH------------hcCc---
Confidence 0 0 0112677766651 1122347778775431 11122222 1122
Q ss_pred eccchhcCcHHHHHh------hcccceeccccceeeccCCCC-CCHHHHH-HHHHHHHHHHH
Q 021147 248 THGDLLSLTDRARIR------TYLGELLGIPPAKQIFDIPES-SDPENEL-IIVDMLRYCLE 301 (317)
Q Consensus 248 ~hg~~~~LSgG~~qR------l~iaral~~~p~ilIlDEPts-LD~~t~~-~l~~~l~~l~~ 301 (317)
..||+||+|| +++||++..+|++++||||++ ||+.+.. .+.+.++++.+
T Consensus 114 -----~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~ 170 (204)
T cd03240 114 -----GRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKS 170 (204)
T ss_pred -----cccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh
Confidence 6899999996 789999999999999999999 9999999 99999988754
No 389
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=9.7e-19 Score=170.81 Aligned_cols=163 Identities=17% Similarity=0.135 Sum_probs=106.4
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
..|.+.+++..|+++. . |++-++++..|..+||||+||||||||+|+|+.-.- ..-|..-++.=+....
T Consensus 79 ~Di~~~~fdLa~G~k~-L-----L~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v--~~f~veqE~~g~~t~~--- 147 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGGKI-L-----LNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQV--SGFHVEQEVRGDDTEA--- 147 (582)
T ss_pred cceeeeeeeeeecchh-h-----hcCCceeeecccccceeCCCCCcHHHHHHHHHhcCc--CccCchhheeccchHH---
Confidence 3689999999998664 3 999999999999999999999999999999987110 0112222222111000
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHH-HH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI-VA 228 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~-~a 228 (317)
.....+.+..+ .-++.++..+.. .. ...++.. ++
T Consensus 148 -----------------~~~~l~~D~~~---------~dfl~~e~~l~~----------------~~---~l~ei~~~~L 182 (582)
T KOG0062|consen 148 -----------------LQSVLESDTER---------LDFLAEEKELLA----------------GL---TLEEIYDKIL 182 (582)
T ss_pred -----------------HhhhhhccHHH---------HHHHHhhhhhhc----------------cc---hHHHHHHHHH
Confidence 00011111111 111111111000 00 1122333 66
Q ss_pred HHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 229 TTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 229 ~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
.-+|.. ... ..++ .+||||=|.|+++|||+..+|++|+|||||+ ||..+-.-+.+.|..+
T Consensus 183 ~glGFt~emq---~~pt--------~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~ 244 (582)
T KOG0062|consen 183 AGLGFTPEMQ---LQPT--------KSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW 244 (582)
T ss_pred HhCCCCHHHH---hccc--------cccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC
Confidence 677763 222 4667 8999999999999999999999999999999 9999988888877765
No 390
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.75 E-value=4.8e-18 Score=180.32 Aligned_cols=100 Identities=15% Similarity=0.219 Sum_probs=73.9
Q ss_pred hhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceecccc---ceee
Q 021147 201 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPP---AKQI 277 (317)
Q Consensus 201 ~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p---~ilI 277 (317)
+|+.+++.|...... ..++.++++.+++....+ +..+ ..|||||+||+++|++|+.+| +++|
T Consensus 792 ltv~E~l~~f~~~~~-----i~~~l~~L~~vgL~~l~l--~~~~--------~tLSgGEkQRl~LAraL~~~p~~~~llI 856 (943)
T PRK00349 792 MTVEEALEFFEAIPK-----IARKLQTLVDVGLGYIKL--GQPA--------TTLSGGEAQRVKLAKELSKRSTGKTLYI 856 (943)
T ss_pred CcHHHHHHHHHhchh-----hhHHHHHHHHCCCCcccc--cCCc--------ccCCHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 578888877643221 223567788888742111 3444 689999999999999999999 9999
Q ss_pred ccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCC
Q 021147 278 FDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNK 316 (317)
Q Consensus 278 lDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~ 316 (317)
||||++ ||+.+...+.+.|+++.+. ..|++..+. .+|+
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~-~aD~ 901 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK-TADW 901 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCE
Confidence 999999 9999999999999998642 345555543 3554
No 391
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.75 E-value=3.6e-18 Score=150.48 Aligned_cols=198 Identities=15% Similarity=0.133 Sum_probs=134.8
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
...|++.++.|+|+...++ +-|+|++++.|....+||.||||||||+|+|+|=.- ...|.|.+.|++.
T Consensus 11 ~~aievsgl~f~y~~~dP~-----~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm-----v~~~~v~Vlgrsa-- 78 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPI-----FFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM-----VGGGVVQVLGRSA-- 78 (291)
T ss_pred cceEEEeccEEecccCCce-----EEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc-----ccCCeEEEcCcCc--
Confidence 3469999999999877766 899999999999999999999999999999999876 6679999999851
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
|.+-.+- .-+.+.+ +. .+|.+. +++--..| +...+++..-|. +- .... .+++..+.
T Consensus 79 ---FhDt~l~---~Sgdl~Y--LG-geW~~~-------~~~agevp--lq~D~sae~mif-gV--~g~d---p~Rre~LI 134 (291)
T KOG2355|consen 79 ---FHDTSLE---SSGDLSY--LG-GEWSKT-------VGIAGEVP--LQGDISAEHMIF-GV--GGDD---PERREKLI 134 (291)
T ss_pred ---ccccccc---ccCceeE--ec-cccccc-------cccccccc--ccccccHHHHHh-hc--cCCC---hhHhhhhh
Confidence 0000000 0000000 00 011111 22211111 111234433332 11 1111 24466777
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHhcCCCc
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEHADRNL 307 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~~~~~~ 307 (317)
+.+.+... -.. ..+|+|||.|+.|+.-|++.=++|+|||-|- ||...+..+.+.+++-++.-..-+
T Consensus 135 ~iLDIdl~-----WRm--------HkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatI 201 (291)
T KOG2355|consen 135 DILDIDLR-----WRM--------HKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATI 201 (291)
T ss_pred hheeccce-----EEE--------eeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEE
Confidence 77776422 122 4799999999999999999999999999999 999999999999999887766666
Q ss_pred chhhcccC
Q 021147 308 SCKSCARN 315 (317)
Q Consensus 308 ~~~~~~~~ 315 (317)
-++.+..|
T Consensus 202 VYATHIFD 209 (291)
T KOG2355|consen 202 VYATHIFD 209 (291)
T ss_pred EEEeeecc
Confidence 66666655
No 392
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.75 E-value=8.3e-18 Score=185.98 Aligned_cols=106 Identities=16% Similarity=0.106 Sum_probs=74.6
Q ss_pred hhhHHHHHHhhhc----cCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceec---cc
Q 021147 200 VIFVVDGLAVLKS----MEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLG---IP 272 (317)
Q Consensus 200 ~~tv~eni~~~~~----~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~---~~ 272 (317)
..||.|++.+.-. +........+++ ++++.+++... ..+.+. .+|||||+||++|||+|+ .+
T Consensus 762 ~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l--~l~q~~--------~tLSGGE~QRV~LAraL~~~~~~ 830 (1809)
T PRK00635 762 GKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYL--PLGRPL--------SSLSGGEIQRLKLAYELLAPSKK 830 (1809)
T ss_pred CCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcch--hhcCcc--------ccCCHHHHHHHHHHHHHhhcCCC
Confidence 3578888876422 111122223333 56777776321 113344 689999999999999997 69
Q ss_pred cceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 273 PAKQIFDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 273 p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
|+++||||||+ ||+.+...+.+.|+++.+. ..|++..+ ..+|+|
T Consensus 831 P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrV 881 (1809)
T PRK00635 831 PTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYV 881 (1809)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEE
Confidence 99999999999 9999999999999998643 45566655 556653
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=6.3e-18 Score=165.15 Aligned_cols=183 Identities=17% Similarity=0.139 Sum_probs=133.6
Q ss_pred CCceEEEeEEEEcCCCC-ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 69 GSLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~-~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
.+.|++.+|+|.|+.+. .+ +.++++++.--+.+++||+||+||||++|++.|-.. |.+|.+.+.++. +
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~-----~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~-----~~rgi~~~~~r~-r 428 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQW-----RKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT-----PTRGIVGRHPRL-R 428 (582)
T ss_pred CCeeEEEeeeccCCCcchhh-----hhccCCccchhhhhheeccCchhHHHHHHHHhccCC-----cccceeeecccc-e
Confidence 46799999999997766 45 999999999999999999999999999999999998 899988877652 4
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 227 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~ 227 (317)
++|.+|+.. +.+. +.+..--.+...++.. .++.+...
T Consensus 429 i~~f~Qhhv-----------------d~l~-----------------------~~v~~vd~~~~~~pG~---~~ee~r~h 465 (582)
T KOG0062|consen 429 IKYFAQHHV-----------------DFLD-----------------------KNVNAVDFMEKSFPGK---TEEEIRRH 465 (582)
T ss_pred ecchhHhhh-----------------hHHH-----------------------HHhHHHHHHHHhCCCC---CHHHHHHH
Confidence 555555320 0011 0111100111233333 34457777
Q ss_pred HHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH---h
Q 021147 228 ATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE---H 302 (317)
Q Consensus 228 a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~---~ 302 (317)
+..+|++ ... -+++ ..||||||.|+++|.+...+|-++||||||+ ||..+-..+..+|+..-- -
T Consensus 466 l~~~Gl~g~la---~~si--------~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~ 534 (582)
T KOG0062|consen 466 LGSFGLSGELA---LQSI--------ASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVL 534 (582)
T ss_pred HHhcCCCchhh---hccc--------cccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEE
Confidence 8888884 222 1223 6799999999999999999999999999999 999999999998887521 1
Q ss_pred cCCCcchhhcccCC
Q 021147 303 ADRNLSCKSCARNK 316 (317)
Q Consensus 303 ~~~~~~~~~~~~~~ 316 (317)
-+|+.++++.+|+.
T Consensus 535 VSHd~~fi~~~c~E 548 (582)
T KOG0062|consen 535 VSHDEEFISSLCKE 548 (582)
T ss_pred EECcHHHHhhcCce
Confidence 45566666666653
No 394
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.72 E-value=3.1e-18 Score=157.09 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=45.4
Q ss_pred hcCcHHHHHhhcccceeccc----cceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGIP----PAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~----p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
..||+||+||+++||+++.+ |+++|||||++ ||+.+...+.+.|+++.+
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~ 207 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAG 207 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhcc
Confidence 68999999999999999864 89999999999 999999999999998754
No 395
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.72 E-value=4.9e-17 Score=172.39 Aligned_cols=101 Identities=13% Similarity=0.194 Sum_probs=74.0
Q ss_pred hhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceecc---cccee
Q 021147 200 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGI---PPAKQ 276 (317)
Q Consensus 200 ~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~---~p~il 276 (317)
.+||.|.+.|...... ..+..++++.+++....+ +.++ .+|||||+||+++|++|.. +|+++
T Consensus 789 ~~tv~e~~~f~~~~~~-----i~~~l~~L~~~gL~~l~l--~~~~--------~tLSgGe~QRl~LA~aL~~~~~~p~ll 853 (924)
T TIGR00630 789 DMTVEEAYEFFEAVPS-----ISRKLQTLCDVGLGYIKL--GQPA--------TTLSGGEAQRIKLAKELSKRSTGRTLY 853 (924)
T ss_pred CCcHHHHHHHHHhccc-----hhHHHHHHHHcCCCchhh--cCcc--------ccCCHHHHHHHHHHHHHhhcCCCCCEE
Confidence 3578888777643321 123567788888732111 3444 7899999999999999997 59999
Q ss_pred eccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCC
Q 021147 277 IFDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNK 316 (317)
Q Consensus 277 IlDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~ 316 (317)
||||||+ ||+.+...+.+.|+++.+. .+|++..+. .+|+
T Consensus 854 ILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~-~aD~ 899 (924)
T TIGR00630 854 ILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK-TADY 899 (924)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCE
Confidence 9999999 9999999999999998642 445555553 3555
No 396
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.72 E-value=8.5e-18 Score=149.55 Aligned_cols=49 Identities=20% Similarity=0.100 Sum_probs=45.9
Q ss_pred hcCcHHHHHhhccccee----ccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELL----GIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral----~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.+||+||+||+++|+|+ +.+|+++|||||++ ||+.+...+.+.|+++..
T Consensus 108 ~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~ 161 (198)
T cd03276 108 KTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAK 161 (198)
T ss_pred cccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHh
Confidence 68999999999999999 68999999999999 999999999999988753
No 397
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.66 E-value=2.1e-16 Score=151.30 Aligned_cols=159 Identities=12% Similarity=0.150 Sum_probs=111.1
Q ss_pred cCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCC---CCCCcCcEEEECcccCceeeEecccCCCCccccccee
Q 021147 91 GGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFEND---KFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELV 167 (317)
Q Consensus 91 ~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~---~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~ 167 (317)
.+|+||||+|++|++++|+|+|||||||++++|+|....- ...|++|.|.+--..
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt---------------------- 454 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT---------------------- 454 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc----------------------
Confidence 3499999999999999999999999999999999985421 134889988743221
Q ss_pred eccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEE
Q 021147 168 IRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVV 246 (317)
Q Consensus 168 ~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i 246 (317)
+ -+++|.+.. -|. .-|+.+.+. ...++....++++..+|+....+- ....
T Consensus 455 ~------------------~a~iPge~Ep~f~-~~tilehl~-------s~tGD~~~AveILnraGlsDAvly-Rr~f-- 505 (593)
T COG2401 455 V------------------SALIPGEYEPEFG-EVTILEHLR-------SKTGDLNAAVEILNRAGLSDAVLY-RRKF-- 505 (593)
T ss_pred h------------------hhccCcccccccC-chhHHHHHh-------hccCchhHHHHHHHhhccchhhhh-hccH--
Confidence 0 111222110 011 123333322 112222336788888888422211 1222
Q ss_pred EeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHhcCCC
Q 021147 247 VTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEHADRN 306 (317)
Q Consensus 247 ~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~~~~~ 306 (317)
.+||.||+-|..||++++.+|.+++.||-.+ ||+.|...+...|.++.+.++--
T Consensus 506 ------~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giT 560 (593)
T COG2401 506 ------SELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGIT 560 (593)
T ss_pred ------hhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCe
Confidence 6999999999999999999999999999999 99999999999999988665433
No 398
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.62 E-value=5.3e-16 Score=150.04 Aligned_cols=187 Identities=17% Similarity=0.177 Sum_probs=112.9
Q ss_pred eEEEEcCCCCccccccCceeeee-EecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecc
Q 021147 76 NKILSYTPGAWIENVGGMTLSDY-DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQE 154 (317)
Q Consensus 76 nls~~y~~~~~~~~~~~L~~isl-~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~ 154 (317)
++..+|+.+... | -.| ...+|+++||+|+||-||||.+|+|+|-+. |.-|+- ++.+
T Consensus 79 e~vHRYg~NgFk-----L--~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~-----PNLG~~--~~pp--------- 135 (591)
T COG1245 79 EVVHRYGVNGFK-----L--YRLPTPRPGKVVGILGPNGIGKSTALKILAGELK-----PNLGRY--EDPP--------- 135 (591)
T ss_pred cceeeccCCceE-----E--ecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccc-----cCCCCC--CCCC---------
Confidence 467788655432 2 223 356799999999999999999999999999 765532 1211
Q ss_pred cCCCCcccccceeeccCChHHHHHHHHHhhhh---cccccc----ccccccchhhHHHHHHhhhccCCCChHHHHHHHHH
Q 021147 155 YTIPRGVRHGELVIRRSDSSSLRNRMRCKAHK---IGCEPS----VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 227 (317)
Q Consensus 155 ~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---ig~v~Q----~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~ 227 (317)
++.. .+..+.-.++......+.+. +..-+| -|..+.+ +|.+-+.-.+. . ....++
T Consensus 136 -----~wde---Vi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG--~v~elLk~~de-----~---g~~dev 197 (591)
T COG1245 136 -----SWDE---VIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKG--KVGELLKKVDE-----R---GKFDEV 197 (591)
T ss_pred -----CHHH---HHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHhcc--hHHHHHHhhhh-----c---CcHHHH
Confidence 0000 01111112222222221110 111122 1111211 33333321111 0 125567
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
.+.+++.... +..+ .+||||+.||++||-++.++.++.+||||+| ||...+-.....++++.+.
T Consensus 198 ve~l~L~nvl---~r~v--------~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~V 266 (591)
T COG1245 198 VERLGLENVL---DRDV--------SELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYV 266 (591)
T ss_pred HHHhcchhhh---hhhh--------hhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeE
Confidence 7777763222 3455 8999999999999999999999999999999 9999999999999998753
Q ss_pred --cCCCcchhhccc
Q 021147 303 --ADRNLSCKSCAR 314 (317)
Q Consensus 303 --~~~~~~~~~~~~ 314 (317)
.+|+|..+--+.
T Consensus 267 iVVEHDLavLD~ls 280 (591)
T COG1245 267 IVVEHDLAVLDYLS 280 (591)
T ss_pred EEEechHHHHHHhh
Confidence 455555443333
No 399
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.59 E-value=3.2e-15 Score=132.85 Aligned_cols=47 Identities=15% Similarity=0.136 Sum_probs=40.8
Q ss_pred hcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHH-HHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVD-MLRYCL 300 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~-~l~~l~ 300 (317)
..+|+|++|+..+++++ .+|+++++|||++ +|+.....+.. .++++.
T Consensus 90 s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~ 138 (200)
T cd03280 90 STFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELL 138 (200)
T ss_pred chHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 57999999999999885 7999999999999 99999998864 566654
No 400
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.58 E-value=4.3e-15 Score=158.45 Aligned_cols=169 Identities=17% Similarity=0.216 Sum_probs=128.3
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
|+|+|.-++||+.+.++||.|||||||+++|+|-.+... -..|+|.+||.+ .++.-
T Consensus 131 l~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~--~~~~~isy~G~~----------------------~~e~~ 186 (1391)
T KOG0065|consen 131 LKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFL--KSSGEITYNGHD----------------------LKEFV 186 (1391)
T ss_pred ecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccc--cCCCceeECCCc----------------------ccccc
Confidence 999999999999999999999999999999999986321 235699999986 22222
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc--CC---CChHHHH----HHHHHHHHcCCCcccCCCCCC
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM--EG---DSDVEKQ----YNQIVATTFNCPYLSFRDDKP 243 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~--~~---~~~~~~~----~~~~~a~~~~l~~~~l~~~~~ 243 (317)
. ++. ++|.+|.-..+ +.+||++-+.|..+. +. +.....+ .+..+++.+|+ ....+
T Consensus 187 ~---~~~-------~aY~~e~DvH~-p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL-----~~~~d 250 (1391)
T KOG0065|consen 187 P---KKT-------VAYNSEQDVHF-PELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGL-----DHCAD 250 (1391)
T ss_pred c---Cce-------EEecccccccc-ceeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCc-----hhhcc
Confidence 1 222 88888754334 368999999886432 21 1111111 34567888885 33567
Q ss_pred EEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 244 VVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 244 ~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
+++|... ....|||||.|+.+|.+++.+++++.+||+|. ||..|.-++.+.++.+...
T Consensus 251 T~VGnd~-~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~ 309 (1391)
T KOG0065|consen 251 TLVGNDM-VRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHI 309 (1391)
T ss_pred ceecccc-cccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhh
Confidence 7777651 15799999999999999999999999999999 9999999999999998654
No 401
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.50 E-value=9.1e-15 Score=117.43 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=59.1
Q ss_pred CceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccC
Q 021147 92 GMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRS 171 (317)
Q Consensus 92 ~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~ 171 (317)
+|+++||++++|++++|+||||||||||++++. +|++.++|.+ +..+
T Consensus 4 aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-----------~G~i~~~g~d----------------------i~~~ 50 (107)
T cd00820 4 SLHGVLVDVYGKVGVLITGDSGIGKTELALELI-----------KRKHRLVGDD----------------------NVEI 50 (107)
T ss_pred EEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-----------CCeEEEeeEe----------------------HHHh
Confidence 399999999999999999999999999999975 4789999876 3334
Q ss_pred ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhh
Q 021147 172 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVL 210 (317)
Q Consensus 172 ~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~ 210 (317)
+....++. +++++|+ +|+ .||++||.+.
T Consensus 51 ~~~~~~~~-------~~~~~q~--lf~--~ti~~Ni~~~ 78 (107)
T cd00820 51 REDSKDEL-------IGRNPEL--GLE--IRLRLNIFLI 78 (107)
T ss_pred hhhhcCCE-------EEEechh--cch--hhHHhhceee
Confidence 43333333 7788887 454 4899999863
No 402
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.49 E-value=3.7e-14 Score=127.58 Aligned_cols=49 Identities=20% Similarity=0.058 Sum_probs=43.2
Q ss_pred hcCcHHHHHhhcccce----eccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGEL----LGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 253 ~~LSgG~~qRl~iara----l~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
..||+||+||+.++++ ++.+|+++|+|||++ ||+.+...+.+.+.++.+
T Consensus 125 ~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~ 178 (213)
T cd03277 125 HHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETAC 178 (213)
T ss_pred hhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhh
Confidence 6899999998876654 458999999999999 999999999999988754
No 403
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.49 E-value=4.6e-14 Score=123.59 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=44.8
Q ss_pred hcCcHHHHHhhcccceec----cccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLG----IPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~----~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.-||+||+||+++||+++ .+|+++|+|||++ ||+.+...+.+.+.++.+
T Consensus 93 ~~LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~ 146 (178)
T cd03239 93 QILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK 146 (178)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 349999999999999985 6999999999999 999999999999998754
No 404
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=7.2e-14 Score=134.83 Aligned_cols=207 Identities=13% Similarity=0.086 Sum_probs=115.8
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
.|.++|.+.+-.+... +.+.||.|-.|..++||||||-|||||++-|+..-- .+|..=.|+++.+...
T Consensus 264 DIKiEnF~ISA~Gk~L------FvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Ral---aIPpnIDvLlCEQEvv--- 331 (807)
T KOG0066|consen 264 DIKIENFDISAQGKLL------FVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARAL---AIPPNIDVLLCEQEVV--- 331 (807)
T ss_pred cceeeeeeeeccccee------eeccceEEEecceecccCCCCCchHHHHHHHHhhhc---cCCCCCceEeeeeeee---
Confidence 4899999988765543 788999999999999999999999999999876421 0133333554444310
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHH-hhh-ccCCCChHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLA-VLK-SMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~-~~~-~~~~~~~~~~~~~~~~a 228 (317)
.-....+.. +-..+.+.+. ..++-. -+..| +..+..|+.+-+. ... ...........+...++
T Consensus 332 ------ad~t~Ai~t--vl~aD~kRl~-lLeee~---~L~~q---~e~Gd~taaErl~~v~~ELraiGA~sAEarARRIL 396 (807)
T KOG0066|consen 332 ------ADSTSAIDT--VLKADKKRLA-LLEEEA---KLMSQ---IEEGDTTAAERLKEVADELRAIGADSAEARARRIL 396 (807)
T ss_pred ------ecCcHHHHH--HHHhhHHHHH-HHHHHH---HHHHH---HHcCchHHHHHHHHHHHHHHHhccccchhHHHHHH
Confidence 000000000 0000110000 000000 01111 1122334444331 111 00000111122344555
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH---hcC
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE---HAD 304 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~---~~~ 304 (317)
.-+|.... ....++ ..+|||-|.|+++||||+..|.+|.|||||+ ||-....-+-+.|+-+.+ ..+
T Consensus 397 AGLGFskE--MQ~rPt--------~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVS 466 (807)
T KOG0066|consen 397 AGLGFSKE--MQERPT--------TKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVS 466 (807)
T ss_pred hhcCCChh--HhcCCc--------cccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEe
Confidence 55555311 124566 7999999999999999999999999999999 998877777677766543 234
Q ss_pred CCcchhhccc
Q 021147 305 RNLSCKSCAR 314 (317)
Q Consensus 305 ~~~~~~~~~~ 314 (317)
|+-.++-.+|
T Consensus 467 HDQgFLD~VC 476 (807)
T KOG0066|consen 467 HDQGFLDSVC 476 (807)
T ss_pred cccchHHHHH
Confidence 4444444444
No 405
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.43 E-value=2.9e-13 Score=120.56 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=30.1
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++|++|+. |++++|+||||||||||+|+|+|...
T Consensus 17 ~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~ 50 (199)
T cd03283 17 ANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI 50 (199)
T ss_pred cceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH
Confidence 77777765 69999999999999999999999764
No 406
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=4.1e-13 Score=124.84 Aligned_cols=49 Identities=10% Similarity=-0.105 Sum_probs=43.9
Q ss_pred chhcCcHHHHHhhcccceec---------cccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 251 DLLSLTDRARIRTYLGELLG---------IPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 251 ~~~~LSgG~~qRl~iaral~---------~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
.+..+|+||+|++++|++++ .+|+++++|||++ ||+.....+.+.+.++
T Consensus 180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~ 238 (270)
T cd03242 180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR 238 (270)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC
Confidence 34568999999999999975 7999999999999 9999999999998764
No 407
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.42 E-value=5.8e-13 Score=148.08 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccc---cceeeccCCCC-CCHHHHHHHHHHHH
Q 021147 222 QYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIP---PAKQIFDIPES-SDPENELIIVDMLR 297 (317)
Q Consensus 222 ~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~---p~ilIlDEPts-LD~~t~~~l~~~l~ 297 (317)
.+..+.+..+|+....+ |.++ ..|||||.||+.+|.-|..+ +.++||||||. |++...+.+.+.++
T Consensus 1677 ~~~L~~L~~vGLgYl~L--Gq~~--------~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~ 1746 (1809)
T PRK00635 1677 QKPLQALIDNGLGYLPL--GQNL--------SSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLR 1746 (1809)
T ss_pred HHHHHHHHHcCCCeeeC--CCcC--------CccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 34566777788743222 6666 78999999999999999875 78999999999 99999999999999
Q ss_pred HHHHh------cCCCcchhhcccC
Q 021147 298 YCLEH------ADRNLSCKSCARN 315 (317)
Q Consensus 298 ~l~~~------~~~~~~~~~~~~~ 315 (317)
++... -+|++....+ +|
T Consensus 1747 ~L~~~g~tvivieH~~~~i~~-aD 1769 (1809)
T PRK00635 1747 TLVSLGHSVIYIDHDPALLKQ-AD 1769 (1809)
T ss_pred HHHhcCCeEEEEeCCHHHHHh-CC
Confidence 98754 4555555544 44
No 408
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.40 E-value=4.5e-13 Score=129.03 Aligned_cols=65 Identities=20% Similarity=0.335 Sum_probs=55.8
Q ss_pred hcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------cCCCcchhhcccCCC
Q 021147 253 LSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
..||||+.||+++|-++-+.+.+.+.|||.+ ||.+.+...-..+++..-| .+|++.|+.-.+|||
T Consensus 455 q~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrv 527 (592)
T KOG0063|consen 455 QGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRV 527 (592)
T ss_pred hcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhccee
Confidence 6899999999999999999999999999999 9999888877777777644 456677777777775
No 409
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.40 E-value=7.5e-13 Score=123.46 Aligned_cols=49 Identities=14% Similarity=-0.004 Sum_probs=44.1
Q ss_pred hcCcHHHHHhhcccceecc----ccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGI----PPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~----~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
..||+||+||+++|++++. +|+++|+|||++ ||+.+...+.+.+.++.+
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~ 222 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR 222 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC
Confidence 4699999999999987553 999999999999 999999999999988743
No 410
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.38 E-value=6.3e-13 Score=114.36 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=44.5
Q ss_pred cCcHHHHHhhcccceecc----ccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 254 SLTDRARIRTYLGELLGI----PPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 254 ~LSgG~~qRl~iaral~~----~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.||+||+||+++++++.. +|+++|+|||++ +|+.....+.+.+.++..
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~ 129 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLV 129 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 599999999999999986 789999999999 999999999999988754
No 411
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.38 E-value=4.8e-12 Score=129.83 Aligned_cols=96 Identities=15% Similarity=0.238 Sum_probs=68.6
Q ss_pred hhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceecccc---ceee
Q 021147 201 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPP---AKQI 277 (317)
Q Consensus 201 ~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p---~ilI 277 (317)
|||.|-..|+...+ .-.+..+.+..+|+....+ |.+. ..|||||.|||.+|.-|.+.. .+.|
T Consensus 784 MTveEA~~FF~~~p-----~I~rkLqtL~dVGLgYi~L--GQpa--------tTLSGGEaQRvKLA~EL~k~~tg~TlYi 848 (935)
T COG0178 784 MTVEEALEFFEAIP-----KIARKLQTLVDVGLGYIKL--GQPA--------TTLSGGEAQRVKLAKELSKRSTGKTLYI 848 (935)
T ss_pred ccHHHHHHHHhcch-----HHHHHHHHHHHcCcceEec--CCcc--------ccccchHHHHHHHHHHHhhccCCCeEEE
Confidence 45655555543322 1233456666677642222 5555 799999999999999999866 9999
Q ss_pred ccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhh
Q 021147 278 FDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKS 311 (317)
Q Consensus 278 lDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~ 311 (317)
|||||. |-....+.+++.|.++... -+||+..+.
T Consensus 849 LDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk 889 (935)
T COG0178 849 LDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIK 889 (935)
T ss_pred eCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEe
Confidence 999999 9999999999999998754 345555443
No 412
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.36 E-value=5.9e-13 Score=118.44 Aligned_cols=47 Identities=15% Similarity=0.006 Sum_probs=36.7
Q ss_pred hcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHH-HHHHH
Q 021147 253 LSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDM-LRYCL 300 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~-l~~l~ 300 (317)
..++.+++| +..+.+...+|+++|+|||++ +|+.....+... ++.+.
T Consensus 90 s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~ 138 (202)
T cd03243 90 STFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLL 138 (202)
T ss_pred eeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHH
Confidence 357777776 777777788999999999999 999988777554 45443
No 413
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.32 E-value=2.6e-12 Score=116.35 Aligned_cols=106 Identities=17% Similarity=0.168 Sum_probs=75.0
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
.+|+++++.++++++|.||||||||||++.+.-. .
T Consensus 20 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~-~-------------------------------------------- 54 (222)
T cd03285 20 PNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI-V-------------------------------------------- 54 (222)
T ss_pred EeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH-H--------------------------------------------
Confidence 8999999999999999999999999999998832 1
Q ss_pred hHHHHHHHHHhhhhcc-ccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccc
Q 021147 173 SSSLRNRMRCKAHKIG-CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGD 251 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig-~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~ 251 (317)
+-.+ +| +||.+...+. + ..+++..+++. +.. .
T Consensus 55 ---~la~-------~g~~vpa~~~~~~----~--------------------~~~il~~~~l~-----d~~-~------- 87 (222)
T cd03285 55 ---LMAQ-------IGCFVPCDSADIP----I--------------------VDCILARVGAS-----DSQ-L------- 87 (222)
T ss_pred ---HHHH-------hCCCcCcccEEEe----c--------------------cceeEeeeccc-----cch-h-------
Confidence 0111 55 4554321111 0 11222223321 011 1
Q ss_pred hhcCcHHHHHhhccccee--ccccceeeccCC---CC-CCHHHHHH
Q 021147 252 LLSLTDRARIRTYLGELL--GIPPAKQIFDIP---ES-SDPENELI 291 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral--~~~p~ilIlDEP---ts-LD~~t~~~ 291 (317)
..+|.+++++..+++++ +.+|+++||||| |+ +|+.+...
T Consensus 88 -~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~ 132 (222)
T cd03285 88 -KGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAW 132 (222)
T ss_pred -cCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHH
Confidence 57899999999999999 899999999999 99 99988754
No 414
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.26 E-value=8.7e-12 Score=111.49 Aligned_cols=44 Identities=18% Similarity=0.107 Sum_probs=41.1
Q ss_pred HHHHhhcccceeccccceeeccCCC-----C-CCHHHHHHHHHHHHHHHH
Q 021147 258 RARIRTYLGELLGIPPAKQIFDIPE-----S-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 258 G~~qRl~iaral~~~p~ilIlDEPt-----s-LD~~t~~~l~~~l~~l~~ 301 (317)
-++++..+||+++.+|+++++|||| + ||+.+.+.+.+.++++.+
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3888899999999999999999999 9 999999999999999754
No 415
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.26 E-value=8e-12 Score=111.78 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=34.2
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+|++|++++|++++|+|||||||||++|+++++.-
T Consensus 19 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~ 54 (204)
T cd03282 19 PNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI 54 (204)
T ss_pred EeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998854
No 416
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.21 E-value=1e-11 Score=122.41 Aligned_cols=47 Identities=17% Similarity=0.315 Sum_probs=43.3
Q ss_pred CceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc-EEEECccc
Q 021147 92 GMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSV 145 (317)
Q Consensus 92 ~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G-~I~i~g~~ 145 (317)
+|++|||++++||+++|+||||||||||++ +|+.. |++| +|.++|.+
T Consensus 21 vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~-----~~sGg~I~ldg~~ 68 (504)
T TIGR03238 21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK-----FSEGYEFFLDATH 68 (504)
T ss_pred HHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC-----CCCCCEEEECCEE
Confidence 399999999999999999999999999999 78877 7777 79999986
No 417
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.11 E-value=6.9e-11 Score=105.38 Aligned_cols=129 Identities=16% Similarity=0.254 Sum_probs=106.4
Q ss_pred CceeeEecccCCCCccccccee------eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELV------IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 219 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~------~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~ 219 (317)
..+|||||+|+|||+.++-++. ..+++..+.++...++++++|+-.. .+.||.+.|+
T Consensus 77 ~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~k-----------------a~~yP~qLSG 139 (240)
T COG1126 77 RKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADK-----------------ADAYPAQLSG 139 (240)
T ss_pred HhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhh-----------------hhhCccccCc
Confidence 4689999999999999988864 4677888888888999999997433 3568899999
Q ss_pred HHHHHHHHHHHcCC-Ccc--------c----------------CCCCCCEEEEec--cchhcCcHHHHHhhcccceeccc
Q 021147 220 EKQYNQIVATTFNC-PYL--------S----------------FRDDKPVVVVTH--GDLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 220 ~~~~~~~~a~~~~l-~~~--------~----------------l~~~~~~~i~~h--g~~~~LSgG~~qRl~iaral~~~ 272 (317)
+|+|++++|+++.+ |.. + ..+|++.+++|| |-|.+.++...- +.-|+.+..+
T Consensus 140 GQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviF-md~G~iie~g 218 (240)
T COG1126 140 GQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIF-MDQGKIIEEG 218 (240)
T ss_pred HHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEE-eeCCEEEEec
Confidence 99999999999998 311 0 467999999999 677788887765 8889899999
Q ss_pred cceeeccCCCCCCHHHHHHHHH
Q 021147 273 PAKQIFDIPESSDPENELIIVD 294 (317)
Q Consensus 273 p~ilIlDEPtsLD~~t~~~l~~ 294 (317)
++-.+|+.|.+ +.+++.+..
T Consensus 219 ~p~~~f~~p~~--~R~~~FL~~ 238 (240)
T COG1126 219 PPEEFFDNPKS--ERTRQFLSK 238 (240)
T ss_pred CHHHHhcCCCC--HHHHHHHHh
Confidence 99999999999 777776643
No 418
>PRK00064 recF recombination protein F; Reviewed
Probab=99.10 E-value=4.4e-10 Score=108.88 Aligned_cols=48 Identities=13% Similarity=-0.041 Sum_probs=43.4
Q ss_pred chhcCcHHHHHhhcccceec---------cccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 251 DLLSLTDRARIRTYLGELLG---------IPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 251 ~~~~LSgG~~qRl~iaral~---------~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
....+|.||++++.+|++++ .+|++++||||++ ||+..+..+.+.+.+
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~ 327 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKG 327 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhc
Confidence 33579999999999999885 7999999999999 999999999998865
No 419
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.07 E-value=4.5e-10 Score=118.22 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=39.5
Q ss_pred hcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHH-HHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIV-DMLRYCL 300 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~-~~l~~l~ 300 (317)
..+|++++++..+.+.+ .+|.++|+|||++ +|+.....+. ..++.+.
T Consensus 384 StfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~ 432 (771)
T TIGR01069 384 STFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLL 432 (771)
T ss_pred hHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 57999999988888776 7899999999999 9999999885 5555553
No 420
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.06 E-value=1.3e-10 Score=106.93 Aligned_cols=50 Identities=12% Similarity=0.018 Sum_probs=42.7
Q ss_pred CCCCCCEEEEeccchhcCcHHH--------HHhhcccceeccccceeeccCCCC-CCHHHHHH
Q 021147 238 FRDDKPVVVVTHGDLLSLTDRA--------RIRTYLGELLGIPPAKQIFDIPES-SDPENELI 291 (317)
Q Consensus 238 l~~~~~~~i~~hg~~~~LSgG~--------~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~ 291 (317)
++..+..+.+.+| ..+|||+ +||+++||++.+++++.+| ||+ +|..++..
T Consensus 115 ~a~a~~ev~~~~G--~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~ 173 (249)
T cd01128 115 LARAYNTVVPPSG--KILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMD 173 (249)
T ss_pred hhhhhhhccccCC--CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCccc
Confidence 5667788888888 7889999 9999999999999999999 999 99655543
No 421
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.05 E-value=5.9e-10 Score=103.80 Aligned_cols=37 Identities=19% Similarity=0.433 Sum_probs=35.4
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
..++|+||||||||||+++|+|++. |++|+|.++|++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~-----~~~G~i~~~g~~ 148 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS-----TGISQLGLRGKK 148 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC-----CCCceEEECCEE
Confidence 6789999999999999999999999 999999999987
No 422
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.01 E-value=4.8e-10 Score=101.11 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=32.3
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+|++|++.+ ++++|+||||||||||+|+++++.-
T Consensus 21 ~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~ 55 (216)
T cd03284 21 PNDTELDPER-QILLITGPNMAGKSTYLRQVALIAL 55 (216)
T ss_pred eeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHH
Confidence 8999999988 9999999999999999999988654
No 423
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.99 E-value=1.4e-09 Score=97.97 Aligned_cols=43 Identities=12% Similarity=0.087 Sum_probs=34.6
Q ss_pred HHHhhcccceeccccceeeccCCCC-CCHHH-HHHHHHHHHHHHH
Q 021147 259 ARIRTYLGELLGIPPAKQIFDIPES-SDPEN-ELIIVDMLRYCLE 301 (317)
Q Consensus 259 ~~qRl~iaral~~~p~ilIlDEPts-LD~~t-~~~l~~~l~~l~~ 301 (317)
+.||++++++++.+|.++|+|||++ +|+.. ...+...++++.+
T Consensus 95 el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~ 139 (213)
T cd03281 95 DLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLK 139 (213)
T ss_pred HHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh
Confidence 4467999999999999999999999 99875 4444567777654
No 424
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.92 E-value=6.6e-09 Score=100.85 Aligned_cols=48 Identities=13% Similarity=-0.012 Sum_probs=44.5
Q ss_pred hhcCcHHHHHhhcccceecc---------ccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 252 LLSLTDRARIRTYLGELLGI---------PPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~~---------~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
...+|.||++++.+|.+++. .|++++||||++ ||+..+..+.+.+...
T Consensus 273 ~~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~ 330 (365)
T TIGR00611 273 EDFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL 330 (365)
T ss_pred HHhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc
Confidence 45799999999999999999 999999999999 9999999999998654
No 425
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.91 E-value=6.2e-09 Score=102.58 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=52.7
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
.++-++++..|..+..+ ++. .|.+.+|+.++|+|+||+|||||+++|++..+ |+.|.|.+.|++
T Consensus 130 ~~~r~~i~~~l~TGira-----ID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-----~~~gvI~~iGer 193 (432)
T PRK06793 130 AFEREEITDVFETGIKS-----IDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK-----ADINVISLVGER 193 (432)
T ss_pred chheechhhccCCCCEE-----Eec-cceecCCcEEEEECCCCCChHHHHHHHhccCC-----CCeEEEEeCCCC
Confidence 46667777777654433 776 49999999999999999999999999999998 888888766653
No 426
>PRK14079 recF recombination protein F; Provisional
Probab=98.88 E-value=1.4e-08 Score=98.08 Aligned_cols=47 Identities=11% Similarity=-0.037 Sum_probs=42.7
Q ss_pred hhcCcHHHHHhhcccceec---------cccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 252 LLSLTDRARIRTYLGELLG---------IPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~---------~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
..-+|+||++++.+|..++ ..|++++||||++ ||+.....+.+.+..
T Consensus 261 ~~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~ 317 (349)
T PRK14079 261 HRYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAAS 317 (349)
T ss_pred HHhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhc
Confidence 3568999999999999998 8999999999999 999999999888754
No 427
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.87 E-value=4.4e-09 Score=102.28 Aligned_cols=77 Identities=13% Similarity=0.107 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHccccccccC---CCCceEEEeEEEEcCCCCccccccCce-----------eeeeEecCCCEEEEEcCC
Q 021147 47 QRRRDAVFREVLQSYDQLRTR---IGSLTDAKNKILSYTPGAWIENVGGMT-----------LSDYDVPKTTSLLLIGPK 112 (317)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~---~~~~I~~~nls~~y~~~~~~~~~~~L~-----------~isl~I~~Ge~vaIvG~S 112 (317)
...+..|++++++..+..... ....++|+||++.|++...+ |+ |+++.|.+|+.++|+||+
T Consensus 103 ~~~~~ER~~~Ll~v~~vn~~~~e~~~~ri~Fe~LTf~YP~er~~-----Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~ 177 (415)
T TIGR00767 103 SPKEGERYFALLKVESVNGDDPEKAKNRVLFENLTPLYPNERLR-----LETSTEDLSTRVLDLFAPIGKGQRGLIVAPP 177 (415)
T ss_pred ccccHhHHHHHhCCCccCCCCccccCCCeEEEEeeecCCCccce-----eecCccccceeeeeeEEEeCCCCEEEEECCC
Confidence 345677888988876543222 23569999999999876544 86 999999999999999999
Q ss_pred CChHHHHHHHHhhccc
Q 021147 113 GSGKSSLVNRISKVFE 128 (317)
Q Consensus 113 GsGKSTLlklL~Gl~~ 128 (317)
|||||||+++|+..+.
T Consensus 178 g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 178 KAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCChhHHHHHHHHhhc
Confidence 9999999999999876
No 428
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.87 E-value=6e-10 Score=97.94 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=33.8
Q ss_pred hcCcHHHHHhhcccceecc--ccceeeccCCCC-CCHHHHHHHH-HHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGI--PPAKQIFDIPES-SDPENELIIV-DMLRYCL 300 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~--~p~ilIlDEPts-LD~~t~~~l~-~~l~~l~ 300 (317)
..+|++++| +++++.. +|+++|+|||++ +|+.....+. ..++.+.
T Consensus 60 s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~ 108 (185)
T smart00534 60 STFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLL 108 (185)
T ss_pred cHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHH
Confidence 578988887 4455544 999999999999 9999777764 4455544
No 429
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.86 E-value=1.5e-08 Score=90.90 Aligned_cols=47 Identities=23% Similarity=0.212 Sum_probs=37.4
Q ss_pred cCcHHHHHhhccccee----ccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 254 SLTDRARIRTYLGELL----GIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 254 ~LSgG~~qRl~iaral----~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
.|||||+-++++|-.+ ....+++||||+.+ ||+.....+.++|+++.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~ 187 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELS 187 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7999999998887544 35788999999999 99999999999999864
No 430
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.86 E-value=3.5e-09 Score=113.27 Aligned_cols=64 Identities=13% Similarity=0.146 Sum_probs=54.2
Q ss_pred hcCcHHHHHhhcccceecccc--ceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 253 LSLTDRARIRTYLGELLGIPP--AKQIFDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p--~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
.+|||||+||++||++|..+| +++||||||+ ||+.....+.+.|+++.+. .+|++..+. .+|+|
T Consensus 488 ~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~-~aD~v 560 (943)
T PRK00349 488 GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIR-AADYI 560 (943)
T ss_pred hhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEE
Confidence 799999999999999999997 9999999999 9999999999999998653 445555543 35653
No 431
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.84 E-value=4.5e-09 Score=112.27 Aligned_cols=64 Identities=14% Similarity=0.152 Sum_probs=54.8
Q ss_pred hcCcHHHHHhhcccceecccc--ceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 253 LSLTDRARIRTYLGELLGIPP--AKQIFDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p--~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
.+|||||+||++||++|..+| .++||||||+ ||+.....+.+.|+++.+. .+|+...+. .+|+|
T Consensus 486 ~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~-~aD~v 558 (924)
T TIGR00630 486 GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIR-AADYV 558 (924)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCEE
Confidence 799999999999999999986 8999999999 9999999999999998653 356665554 56654
No 432
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.83 E-value=8.2e-09 Score=101.93 Aligned_cols=65 Identities=9% Similarity=0.128 Sum_probs=56.7
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
-+.++.++++..|..+..+ ++.++ .|.+|++++|+|+||||||||+++|+++.. |+.|.|.+.|.
T Consensus 137 p~~~~r~~v~~~l~TGi~a-----ID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~-----pd~gvv~liGe 201 (450)
T PRK06002 137 PPAMTRARVETGLRTGVRV-----IDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA-----FDTVVIALVGE 201 (450)
T ss_pred CCCeEeecceEEcCCCcEE-----eeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCeeeeeeccc
Confidence 3568999999999766444 87785 999999999999999999999999999999 88999988653
No 433
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.82 E-value=1.8e-09 Score=104.53 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=46.0
Q ss_pred hcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
..||||+.||.++|.+.....++.+||||.+ ||...+......|+.+..
T Consensus 212 ~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~ 261 (592)
T KOG0063|consen 212 EQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLIN 261 (592)
T ss_pred hhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhC
Confidence 6899999999999999999999999999999 999999998888888764
No 434
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.78 E-value=2.1e-08 Score=90.85 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=39.5
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhh-cccCCCCCCcCcEEEE
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK-VFENDKFASERAQVTY 141 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~G-l~~p~~~~p~~G~I~i 141 (317)
.+|++|++.+|++++|+||||+||||+++++++ .+. ++.|...+
T Consensus 21 ~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l-----a~~G~~v~ 65 (222)
T cd03287 21 PNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM-----AQIGSFVP 65 (222)
T ss_pred EEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH-----HhCCCEEE
Confidence 899999999999999999999999999999999 555 77776553
No 435
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.75 E-value=4.2e-08 Score=89.35 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=31.8
Q ss_pred EecCCCEEEEEcCCCChHHHH-HHHHhhcccCCCCCCcCcEEEEC
Q 021147 99 DVPKTTSLLLIGPKGSGKSSL-VNRISKVFENDKFASERAQVTYN 142 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTL-lklL~Gl~~p~~~~p~~G~I~i~ 142 (317)
-+++|+++.|+|+|||||||| +++++++.+ +....+++.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~-----~g~~~~yi~ 59 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQ-----NGYSVSYVS 59 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHh-----CCCcEEEEe
Confidence 368899999999999999999 699999887 544445543
No 436
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.68 E-value=4.2e-08 Score=97.15 Aligned_cols=47 Identities=17% Similarity=0.204 Sum_probs=44.6
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
++++ |.+.+|++++|+|+||+|||||+++|+|+++ |+.|.|.+.|++
T Consensus 149 id~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~-----~~~gvI~~~Ger 195 (438)
T PRK07721 149 IDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS-----ADLNVIALIGER 195 (438)
T ss_pred hhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC-----CCeEEEEEEecC
Confidence 9999 9999999999999999999999999999999 899999987764
No 437
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.63 E-value=2.3e-08 Score=98.56 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=34.5
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|+++ |+|.+|++++|+|+||||||||+++|+|+++
T Consensus 146 ID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~ 180 (434)
T PRK07196 146 INGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ 180 (434)
T ss_pred ccce-EeEecceEEEEECCCCCCccHHHHHHhcccC
Confidence 9999 9999999999999999999999999999998
No 438
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.63 E-value=2e-08 Score=88.23 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=42.3
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
.+-+.+.+++|+.++|+||||||||||+++|+|+++ |+.|.|.+.+.
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~-----~~~~~i~ied~ 61 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP-----PDERIITIEDT 61 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC-----CCCCEEEECCc
Confidence 444778899999999999999999999999999999 88999998764
No 439
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.62 E-value=8.8e-08 Score=95.73 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=33.2
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++.++.+.+|.+++|||||||||||++..|++.+.
T Consensus 246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 246 LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH
Confidence 667778888999999999999999999999999987
No 440
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.56 E-value=2.9e-07 Score=80.82 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=40.5
Q ss_pred hcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 253 LSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
...|.|+-. +++-.-=..+.-+.|||||.+ |.|.-+-.+...|+++.+.
T Consensus 128 h~~SHGEsf-~~i~~~rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~s 177 (233)
T COG3910 128 HHMSHGESF-LAIFHNRFNGQGIYILDEPEAALSPSRQLELLAILRDLADS 177 (233)
T ss_pred hhhccchHH-HHHHHHHhccCceEEecCccccCCHHHHHHHHHHHHHHHhc
Confidence 578999987 665555567888999999999 9999999999999987543
No 441
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.54 E-value=1.6e-07 Score=99.33 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=40.2
Q ss_pred hcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHH-HHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVD-MLRYCL 300 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~-~l~~l~ 300 (317)
..+|++++++..+++++ .+|.++|+|||++ +|+.....+.. .+..+.
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~ 437 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLR 437 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 57999999999999988 7999999999999 99998888765 455543
No 442
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.51 E-value=2.9e-07 Score=80.43 Aligned_cols=35 Identities=29% Similarity=0.449 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
+|++++|+|+||||||||+++|++++. + +.++|.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~-----~----~~i~gd~ 36 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS-----A----KFIDGDD 36 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC-----C----EEECCcc
Confidence 689999999999999999999999988 5 4777764
No 443
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.50 E-value=9.7e-08 Score=89.89 Aligned_cols=133 Identities=17% Similarity=0.292 Sum_probs=104.7
Q ss_pred ceeeEeccc--CCCCcccccceee-----c-cC-ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC
Q 021147 147 DGTYFLQEY--TIPRGVRHGELVI-----R-RS-DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS 217 (317)
Q Consensus 147 ~~~~~~Q~~--~l~~~~~~~~~~~-----~-~~-~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~ 217 (317)
.++||||++ .|+|.++++.... + .. ..++.++++.++++.+|+-..+ ...+.|+.+.
T Consensus 89 ~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~--------------~~~~~YPhel 154 (316)
T COG0444 89 EIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPE--------------RRLKSYPHEL 154 (316)
T ss_pred eEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHH--------------HHHhhCCccc
Confidence 589999986 5899999997542 1 12 3445667778888888863221 1246789999
Q ss_pred hHHHHHHHHHHHHcCC-Cccc-------------------------CCCCCCEEEEec--cchhcCcHHHHHhhccccee
Q 021147 218 DVEKQYNQIVATTFNC-PYLS-------------------------FRDDKPVVVVTH--GDLLSLTDRARIRTYLGELL 269 (317)
Q Consensus 218 ~~~~~~~~~~a~~~~l-~~~~-------------------------l~~~~~~~i~~h--g~~~~LSgG~~qRl~iaral 269 (317)
|+++.|++.+|.++.+ |... ...+..++++|| |.+.++|+...+ +.-|+.+
T Consensus 155 SGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~V-MYaG~iV 233 (316)
T COG0444 155 SGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAV-MYAGRIV 233 (316)
T ss_pred CCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEE-EECcEEE
Confidence 9999999999888877 3110 346899999999 688999999999 9999999
Q ss_pred ccccceeeccCCCCCCHHHHHHHHHHH
Q 021147 270 GIPPAKQIFDIPESSDPENELIIVDML 296 (317)
Q Consensus 270 ~~~p~ilIlDEPtsLD~~t~~~l~~~l 296 (317)
..+|...||.+|.+ |||+.++...-
T Consensus 234 E~g~~~~i~~~P~H--PYT~~Ll~s~P 258 (316)
T COG0444 234 EEGPVEEIFKNPKH--PYTRGLLNSLP 258 (316)
T ss_pred EeCCHHHHhcCCCC--hHHHHHHHhCc
Confidence 99999999999999 99998876553
No 444
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.50 E-value=1.1e-07 Score=105.85 Aligned_cols=89 Identities=12% Similarity=0.067 Sum_probs=66.6
Q ss_pred hhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHH------hhcccceecc
Q 021147 200 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARI------RTYLGELLGI 271 (317)
Q Consensus 200 ~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~q------Rl~iaral~~ 271 (317)
..|+.+||.+ .+... .. ..+++..+.. +..++.| .+.+...| .||+||+| |+++||+++.
T Consensus 1155 ~~~~~~~i~~-~~~~~--~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~lS~Gq~~~~~~~~rlala~~~~~ 1222 (1311)
T TIGR00606 1155 RGQDIEYIEI-RSDAD--EN-----VSASDKRRNYNYRVVMLKG-DTALDMRG---RCSAGQKVLASLIIRLALAETFCL 1222 (1311)
T ss_pred CccHHHHhhc-CCCCC--hH-----HHHHHHcCchHHHhccCCC-CeecCCCC---CCchhhhhHhhHhHHHHHHHHHhc
Confidence 3589999997 43221 11 3555555542 2234555 55554444 89999999 9999999999
Q ss_pred ccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 272 PPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 272 ~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+|++++|||||+ ||+.+...+...|..+.
T Consensus 1223 ~~~il~lDEPt~~lD~~~~~~l~~~l~~~~ 1252 (1311)
T TIGR00606 1223 NCGIIALDEPTTNLDRENIESLAHALVEII 1252 (1311)
T ss_pred CCCEEEeeCCcccCCHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999888874
No 445
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.48 E-value=2.4e-07 Score=81.82 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=22.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++|+|+||||||||++.|.+++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~ 24 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999984
No 446
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.48 E-value=1.7e-07 Score=87.83 Aligned_cols=132 Identities=14% Similarity=0.155 Sum_probs=108.3
Q ss_pred cCceeeEecccCCCCccccccee-----eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChH
Q 021147 145 VGDGTYFLQEYTIPRGVRHGELV-----IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 219 (317)
Q Consensus 145 ~~~~~~~~Q~~~l~~~~~~~~~~-----~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~ 219 (317)
..++||+||+|+|..+.++.++. +.+++..+..+++.++++.+|+-. ..+.|+.+.|+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~d-----------------k~~~yP~qLSG 144 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSD-----------------KADRYPAQLSG 144 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChh-----------------hhccCchhcCc
Confidence 35799999999999877777643 567888899999999999988631 13568889999
Q ss_pred HHHHHHHHHHHcCC-Cccc-------------------------CCCCCCEEEEec--cchhcCcHHHHHhhcccceecc
Q 021147 220 EKQYNQIVATTFNC-PYLS-------------------------FRDDKPVVVVTH--GDLLSLTDRARIRTYLGELLGI 271 (317)
Q Consensus 220 ~~~~~~~~a~~~~l-~~~~-------------------------l~~~~~~~i~~h--g~~~~LSgG~~qRl~iaral~~ 271 (317)
+|+|++.+|+++.. |... ...|.+++++|| ..+.++|..... |.-|+.+..
T Consensus 145 GQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVav-m~~G~lvE~ 223 (339)
T COG1135 145 GQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAV-LDQGRLVEE 223 (339)
T ss_pred chhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheE-eeCCEEEEe
Confidence 99999999999987 3110 356899999999 577889999988 999999999
Q ss_pred ccceeeccCCCCCCHHHHHHHHHHH
Q 021147 272 PPAKQIFDIPESSDPENELIIVDML 296 (317)
Q Consensus 272 ~p~ilIlDEPtsLD~~t~~~l~~~l 296 (317)
++-.-+|-.|.+ +.+++.+.+..
T Consensus 224 G~v~~vF~~Pk~--~~t~~fi~~~~ 246 (339)
T COG1135 224 GTVSEVFANPKH--AITQEFIGETL 246 (339)
T ss_pred ccHHHhhcCcch--HHHHHHHHhhc
Confidence 999999999998 78887776554
No 447
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.45 E-value=3.9e-07 Score=81.53 Aligned_cols=130 Identities=19% Similarity=0.231 Sum_probs=94.9
Q ss_pred cCceeeEecccCCCCccccccee-----eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHH-hhhccCCCCh
Q 021147 145 VGDGTYFLQEYTIPRGVRHGELV-----IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLA-VLKSMEGDSD 218 (317)
Q Consensus 145 ~~~~~~~~Q~~~l~~~~~~~~~~-----~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~-~~~~~~~~~~ 218 (317)
.+++|||||.++-|| +++.++. +.+...+.+...++..++..+ +|+.+. -+...+..++
T Consensus 87 Rr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~Aa--------------LWdEVKDrL~~sa~~LS 151 (253)
T COG1117 87 RRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAA--------------LWDEVKDRLHKSALGLS 151 (253)
T ss_pred HHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhH--------------hHHHhHHHhhCCccCCC
Confidence 467999999998887 5665543 333333555555554444433 344442 2334556689
Q ss_pred HHHHHHHHHHHHcCC-Ccc-----------------------cCCCCCCEEEEec--cchhcCcHHHHHhhcccceeccc
Q 021147 219 VEKQYNQIVATTFNC-PYL-----------------------SFRDDKPVVVVTH--GDLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 219 ~~~~~~~~~a~~~~l-~~~-----------------------~l~~~~~~~i~~h--g~~~~LSgG~~qRl~iaral~~~ 272 (317)
++|+|+..+|+++.+ |.. .+.+.|+++|+|| .+|.+.|+...- +..|+.+..+
T Consensus 152 GGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taF-f~~G~LvE~g 230 (253)
T COG1117 152 GGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAF-FYLGELVEFG 230 (253)
T ss_pred hhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhh-hcccEEEEEc
Confidence 999999999999988 311 1677899999999 488999999988 8999999999
Q ss_pred cceeeccCCCCCCHHHHHHH
Q 021147 273 PAKQIFDIPESSDPENELII 292 (317)
Q Consensus 273 p~ilIlDEPtsLD~~t~~~l 292 (317)
+.--||..|.. ..|+..+
T Consensus 231 ~T~~iF~~P~~--~~TedYi 248 (253)
T COG1117 231 PTDKIFTNPKH--KRTEDYI 248 (253)
T ss_pred CHHhhhcCccH--HHHHHHh
Confidence 99999999988 6666654
No 448
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.45 E-value=1.4e-07 Score=88.28 Aligned_cols=130 Identities=17% Similarity=0.263 Sum_probs=100.0
Q ss_pred CcEEEECcc-----cCceeeEecccCCCCcccccceeecc-------CChHHHHHHHHHhhhhccccccccccccchhhH
Q 021147 136 RAQVTYNSS-----VGDGTYFLQEYTIPRGVRHGELVIRR-------SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFV 203 (317)
Q Consensus 136 ~G~I~i~g~-----~~~~~~~~Q~~~l~~~~~~~~~~~~~-------~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv 203 (317)
.|++++|-. ++++|++||+|.||+++++.++.-.+ .+..+.+.++.++++.+.+
T Consensus 62 ~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL-------------- 127 (345)
T COG1118 62 NGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQL-------------- 127 (345)
T ss_pred CCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcc--------------
Confidence 466666654 57899999999999999999865222 2334666676666554432
Q ss_pred HHHHHhhhccCCCChHHHHHHHHHHHHcCC-Ccc-c------------------------CCCCCCEEEEecc--chhcC
Q 021147 204 VDGLAVLKSMEGDSDVEKQYNQIVATTFNC-PYL-S------------------------FRDDKPVVVVTHG--DLLSL 255 (317)
Q Consensus 204 ~eni~~~~~~~~~~~~~~~~~~~~a~~~~l-~~~-~------------------------l~~~~~~~i~~hg--~~~~L 255 (317)
+ -+++.|+.+.+++|+|++++|+++.. |.. . ...+.+++++||+ ++.++
T Consensus 128 -~--~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~l 204 (345)
T COG1118 128 -E--GLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALEL 204 (345)
T ss_pred -c--chhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhh
Confidence 1 13567899999999999999999988 311 0 2348999999995 78899
Q ss_pred cHHHHHhhcccceeccccceeeccCCCC
Q 021147 256 TDRARIRTYLGELLGIPPAKQIFDIPES 283 (317)
Q Consensus 256 SgG~~qRl~iaral~~~p~ilIlDEPts 283 (317)
++..-. +.-|++-.-+|+..|+|.|.+
T Consensus 205 adrvvv-l~~G~Ieqvg~p~ev~~~P~s 231 (345)
T COG1118 205 ADRVVV-LNQGRIEQVGPPDEVYDHPAS 231 (345)
T ss_pred cceEEE-ecCCeeeeeCCHHHHhcCCCc
Confidence 998876 999999999999999999998
No 449
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.44 E-value=2.1e-07 Score=81.61 Aligned_cols=26 Identities=35% Similarity=0.589 Sum_probs=24.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|++++|+||||||||||+++|++...
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 78999999999999999999999987
No 450
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.44 E-value=2.2e-07 Score=89.35 Aligned_cols=121 Identities=17% Similarity=0.210 Sum_probs=96.9
Q ss_pred cCceeeEecccCCCCccccccee---ec---cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCCh
Q 021147 145 VGDGTYFLQEYTIPRGVRHGELV---IR---RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD 218 (317)
Q Consensus 145 ~~~~~~~~Q~~~l~~~~~~~~~~---~~---~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~ 218 (317)
.+.++||||+|.|||++++.++. ++ .....++++++.+.++.+++-. +...++.+.+
T Consensus 76 kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~-----------------~~~R~p~qLS 138 (352)
T COG3842 76 KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG-----------------FADRKPHQLS 138 (352)
T ss_pred hcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh-----------------hhhhChhhhC
Confidence 36799999999999999999874 22 1233457778888777777421 3467788899
Q ss_pred HHHHHHHHHHHHcCC-Ccc-c------------------------CCCCCCEEEEec--cchhcCcHHHHHhhcccceec
Q 021147 219 VEKQYNQIVATTFNC-PYL-S------------------------FRDDKPVVVVTH--GDLLSLTDRARIRTYLGELLG 270 (317)
Q Consensus 219 ~~~~~~~~~a~~~~l-~~~-~------------------------l~~~~~~~i~~h--g~~~~LSgG~~qRl~iaral~ 270 (317)
++++|++++|+++.. |.. . ...|.+++++|| .+|..+|+..-. +.-++..-
T Consensus 139 GGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~V-m~~G~I~Q 217 (352)
T COG3842 139 GGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAV-MNDGRIEQ 217 (352)
T ss_pred hHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEE-ccCCceee
Confidence 999999999999877 311 0 355899999999 488999999988 99999999
Q ss_pred cccceeeccCCCC
Q 021147 271 IPPAKQIFDIPES 283 (317)
Q Consensus 271 ~~p~ilIlDEPts 283 (317)
.+++..|++.|.+
T Consensus 218 ~gtP~eiY~~P~~ 230 (352)
T COG3842 218 VGTPEEIYERPAT 230 (352)
T ss_pred cCCHHHHhhCcch
Confidence 9999999999987
No 451
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.41 E-value=3e-07 Score=81.41 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=26.4
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999975
No 452
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.39 E-value=4.3e-07 Score=89.90 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=39.9
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
++++ |++.+|+.++|+|+||||||||+++|+|+.++ .+.|.|.+.|.
T Consensus 155 ID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~----~~~~vi~liGe 201 (442)
T PRK06315 155 IDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE----ADVNVIALIGE 201 (442)
T ss_pred Eecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc----CCceEEEEECC
Confidence 8887 99999999999999999999999999999851 34467776553
No 453
>PRK13695 putative NTPase; Provisional
Probab=98.38 E-value=4.6e-07 Score=78.52 Aligned_cols=47 Identities=19% Similarity=0.035 Sum_probs=33.2
Q ss_pred hcCcHHHHHhhcccceeccccceeeccCCCCCCHHHHHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCL 300 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p~ilIlDEPtsLD~~t~~~l~~~l~~l~ 300 (317)
..+|++++.++.+.+....+|+++++|||..++..+ ..+.+.+.++.
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~-~~~~~~l~~~~ 123 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKS-PKFVKAVEEVL 123 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh-HHHHHHHHHHH
Confidence 479999999999898888999999999953332222 22344444444
No 454
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.37 E-value=3e-07 Score=82.00 Aligned_cols=28 Identities=29% Similarity=0.461 Sum_probs=26.7
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++|++++|+|+||||||||++.|+++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999999987
No 455
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.35 E-value=6.1e-07 Score=81.17 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=33.9
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
-+|++|++++|++++|.||||+||||+++.+.+..-
T Consensus 20 ~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~ 55 (218)
T cd03286 20 PNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVI 55 (218)
T ss_pred EeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHH
Confidence 899999999999999999999999999999998754
No 456
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.32 E-value=4.7e-07 Score=89.40 Aligned_cols=63 Identities=10% Similarity=0.098 Sum_probs=54.3
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
.++.++++..|..+..+ ++++ |+|.+|+.++|+|+||+|||||+++|+++.. ++.|.+.+.|.
T Consensus 129 ~~~r~~v~~~l~tGi~a-----ID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~-----~d~~vi~~iGe 191 (433)
T PRK07594 129 AMVRQPITQPLMTGIRA-----IDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD-----ADSNVLVLIGE 191 (433)
T ss_pred ceeccCHhheeCCCcee-----eeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCC-----CCEEEEEEECC
Confidence 46777788777555444 9999 9999999999999999999999999999998 88888877775
No 457
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.32 E-value=7.2e-07 Score=64.66 Aligned_cols=36 Identities=33% Similarity=0.507 Sum_probs=30.7
Q ss_pred ceeeeeEecC-CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPK-TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~-Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++.++++.+ |.++.|.|+||||||||+.+|.=++-
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4556778876 57999999999999999999988876
No 458
>PRK08149 ATP synthase SpaL; Validated
Probab=98.31 E-value=6.4e-07 Score=88.34 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=43.0
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcC---cEEEECccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER---AQVTYNSSV 145 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~---G~I~i~g~~ 145 (317)
++++ |++.+||+++|+|+||||||||+++|++... ++. |.|..+|++
T Consensus 142 id~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~-----~dv~v~g~Ig~rg~e 191 (428)
T PRK08149 142 IDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE-----ADVFVIGLIGERGRE 191 (428)
T ss_pred Eeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC-----CCeEEEEEEeeCCcc
Confidence 9999 9999999999999999999999999999988 665 888888874
No 459
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.31 E-value=9.5e-07 Score=84.37 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=42.6
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
++++ |.+.+|++++|+|+||||||||+++|+|... |+.|.+..-|.
T Consensus 60 iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-----~~~~vi~~iGe 105 (326)
T cd01136 60 IDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT-----ADVNVIALIGE 105 (326)
T ss_pred Eeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEec
Confidence 8999 9999999999999999999999999999999 88888877664
No 460
>PLN02796 D-glycerate 3-kinase
Probab=98.30 E-value=3.2e-07 Score=87.93 Aligned_cols=51 Identities=16% Similarity=0.237 Sum_probs=41.9
Q ss_pred ceeeeeEe---cCCCE-----EEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 93 MTLSDYDV---PKTTS-----LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 93 L~~isl~I---~~Ge~-----vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
++++++.+ ++|+. +||+|+||||||||++.|.+++.+.. ...|.|.+||..
T Consensus 82 l~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g--~~~g~IsiDdfY 140 (347)
T PLN02796 82 EDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATG--RRAASLSIDDFY 140 (347)
T ss_pred HHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccC--CceeEEEECCcc
Confidence 88899888 67887 99999999999999999999998210 135788888864
No 461
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.29 E-value=6.2e-07 Score=90.29 Aligned_cols=61 Identities=21% Similarity=0.249 Sum_probs=53.6
Q ss_pred EEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 74 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 74 ~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
++|++..|+... + ++++++.+..|+.++|+|+||||||||++.|.|+++ |.+|++.++...
T Consensus 187 ~~d~~~v~Gq~~-~-----~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp-----p~~g~e~le~~~ 247 (506)
T PRK09862 187 QHDLSDVIGQEQ-G-----KRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP-----DLSNEEALESAA 247 (506)
T ss_pred ccCeEEEECcHH-H-----HhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC-----CCCCcEEEecch
Confidence 458888886543 3 889999999999999999999999999999999999 999998887753
No 462
>PRK01889 GTPase RsgA; Reviewed
Probab=98.23 E-value=7.4e-07 Score=86.28 Aligned_cols=47 Identities=23% Similarity=0.281 Sum_probs=43.0
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
++.+.-.+++|++++|+|+||+|||||++.|.|... +..|+|.+++.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~-----~~~G~i~~~~~ 231 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV-----QKTGAVREDDS 231 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc-----cceeeEEECCC
Confidence 666777889999999999999999999999999999 99999998764
No 463
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.19 E-value=1.6e-06 Score=85.81 Aligned_cols=46 Identities=13% Similarity=0.218 Sum_probs=43.8
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
++++ |++.+|++++|+|+||+|||||+++|+++.. ++.|.|.+.|.
T Consensus 154 ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~-----~d~~vi~~iGe 199 (441)
T PRK09099 154 VDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQ-----CDVNVIALIGE 199 (441)
T ss_pred ccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCeEEEEEEcc
Confidence 9999 9999999999999999999999999999998 88899988885
No 464
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.19 E-value=1.8e-06 Score=85.56 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=41.0
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcC---cEEEECccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER---AQVTYNSSV 145 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~---G~I~i~g~~ 145 (317)
++.+ |++.+|++++|+|+||||||||+++|+|+.+ |+. |.|.++|++
T Consensus 166 ID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~-----~d~iv~g~Igerg~e 215 (455)
T PRK07960 166 INAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQ-----ADVIVVGLIGERGRE 215 (455)
T ss_pred eeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCC-----CCEEEEEEEEECCeE
Confidence 4333 9999999999999999999999999999998 664 888888874
No 465
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.19 E-value=9.8e-06 Score=64.91 Aligned_cols=27 Identities=30% Similarity=0.677 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++..+.|+||+||||||+++.|+..+.
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccC
Confidence 367899999999999999999999987
No 466
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.18 E-value=4.9e-06 Score=72.15 Aligned_cols=49 Identities=8% Similarity=-0.025 Sum_probs=36.0
Q ss_pred hcCcHHHHH------hhcccceeccccceeeccCCCC-CC---HHHHHHHHHHHHHHHH
Q 021147 253 LSLTDRARI------RTYLGELLGIPPAKQIFDIPES-SD---PENELIIVDMLRYCLE 301 (317)
Q Consensus 253 ~~LSgG~~q------Rl~iaral~~~p~ilIlDEPts-LD---~~t~~~l~~~l~~l~~ 301 (317)
..+|+|++| ......+...+|+++|+|+|++ +| ......+.+.++.+.+
T Consensus 70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~ 128 (187)
T cd01124 70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR 128 (187)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH
Confidence 467888876 3334444567999999999999 98 7777777777776643
No 467
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.18 E-value=5.7e-06 Score=69.05 Aligned_cols=34 Identities=29% Similarity=0.587 Sum_probs=28.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g 143 (317)
+++|.|+|||||||+++.+++... +..+.|.+-+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~-----~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA-----TKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH-----hcCCEEEEEE
Confidence 378999999999999999999987 6666666433
No 468
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.17 E-value=2.2e-06 Score=84.39 Aligned_cols=47 Identities=15% Similarity=0.192 Sum_probs=44.0
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
++++ |.+.+|++++|+|+||+|||||+++|++..+ ++.|.|.+.|.+
T Consensus 128 iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~-----~~~gvi~~~Ger 174 (413)
T TIGR03497 128 IDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAK-----ADINVIALIGER 174 (413)
T ss_pred eeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCeEEEEEEccc
Confidence 8999 9999999999999999999999999999998 888988888764
No 469
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.17 E-value=1.5e-06 Score=83.11 Aligned_cols=121 Identities=17% Similarity=0.233 Sum_probs=90.9
Q ss_pred cCceeeEecccCCCCccccccee-----eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChH
Q 021147 145 VGDGTYFLQEYTIPRGVRHGELV-----IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 219 (317)
Q Consensus 145 ~~~~~~~~Q~~~l~~~~~~~~~~-----~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~ 219 (317)
+++++||||+|.|||++++.++. +.+.+..++++++.++.+.+++- .+++..+...++
T Consensus 74 ~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~-----------------~lL~r~P~~LSG 136 (338)
T COG3839 74 KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLE-----------------HLLNRKPLQLSG 136 (338)
T ss_pred HCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCCh-----------------hHHhcCcccCCh
Confidence 47899999999999999999865 34456677777777666655531 124667888999
Q ss_pred HHHHHHHHHHHcCC-Ccc-------------------------cCCCCCCEEEEecc--chhcCcHHHHHhhcccceecc
Q 021147 220 EKQYNQIVATTFNC-PYL-------------------------SFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGI 271 (317)
Q Consensus 220 ~~~~~~~~a~~~~l-~~~-------------------------~l~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~ 271 (317)
+++|++++++++-. |.. ....+.+++.+||+ +|..|++..-. +.-++..-.
T Consensus 137 GQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~V-m~~G~i~Q~ 215 (338)
T COG3839 137 GQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVV-MNDGRIQQV 215 (338)
T ss_pred hhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEE-EeCCeeeec
Confidence 99999999998765 210 02347899999996 56666666655 556888889
Q ss_pred ccceeeccCCCC
Q 021147 272 PPAKQIFDIPES 283 (317)
Q Consensus 272 ~p~ilIlDEPts 283 (317)
+.+..|+++|.+
T Consensus 216 g~p~ely~~P~n 227 (338)
T COG3839 216 GTPLELYERPAN 227 (338)
T ss_pred CChHHHhhCccc
Confidence 999999999987
No 470
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.16 E-value=1.3e-06 Score=82.90 Aligned_cols=43 Identities=14% Similarity=0.367 Sum_probs=38.7
Q ss_pred eeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECc
Q 021147 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (317)
Q Consensus 96 isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g 143 (317)
+++.++.|+.++|+|++|||||||+++|+++++ +..|.+.+..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~-----~~~~iv~ied 179 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP-----KDERIITIED 179 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC-----ccccEEEEcC
Confidence 457788999999999999999999999999998 8888888764
No 471
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.15 E-value=1.5e-06 Score=78.80 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=29.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEE
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 139 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I 139 (317)
..++||+|+||||||||++.|+++++ +..|.+
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~-----~~~g~~ 64 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQ-----QDGELP 64 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhh-----hccCCc
Confidence 46899999999999999999999999 888873
No 472
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.15 E-value=6.5e-06 Score=74.69 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=23.9
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHh
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRIS 124 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~ 124 (317)
-+++|.++.|.|++|||||||+..++
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~ 46 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFV 46 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHH
Confidence 58899999999999999999998774
No 473
>PRK15494 era GTPase Era; Provisional
Probab=98.13 E-value=1.8e-06 Score=83.03 Aligned_cols=55 Identities=25% Similarity=0.199 Sum_probs=48.2
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCC-------EEEEEcCCCChHHHHHHHHhhcc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTT-------SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge-------~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
..+.+++++++|+|+..... ++.++|++++|+ .++|+|.+|+|||||++.|.|-.
T Consensus 15 ~~g~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 15 FKGDTEALAAAVREDASTGS-----TSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred hCCccccccccccCCCCccc-----ccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 45679999999999855443 999999999999 99999999999999999998753
No 474
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.13 E-value=2.1e-06 Score=84.65 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=42.6
Q ss_pred eeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 95 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 95 ~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
|.+|++.+|+.++|+|+||||||||+++|+++.+ |+.|.|.+.|..
T Consensus 132 D~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~-----~~~gvi~~iGer 177 (418)
T TIGR03498 132 DTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTD-----ADVVVIALVGER 177 (418)
T ss_pred eeeccccCCcEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEeee
Confidence 4799999999999999999999999999999999 889998888763
No 475
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.12 E-value=4.5e-06 Score=72.36 Aligned_cols=26 Identities=23% Similarity=0.551 Sum_probs=24.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|++++|+||||||||||++.|++.+.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999999999976
No 476
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.12 E-value=2.4e-06 Score=84.52 Aligned_cols=46 Identities=13% Similarity=0.165 Sum_probs=42.9
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
++++ |.+.+|++++|+|+||||||||+++|++... |+.|.+...|.
T Consensus 136 id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~-----~~~~vi~~iG~ 181 (422)
T TIGR02546 136 IDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGAS-----ADVNVIALIGE 181 (422)
T ss_pred ehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEcc
Confidence 9999 9999999999999999999999999999998 88888877554
No 477
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.12 E-value=2.2e-06 Score=85.10 Aligned_cols=46 Identities=20% Similarity=0.241 Sum_probs=41.9
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
++++ |.|.+|++++|+|+||||||||+++|++..+ ++.|.+...|.
T Consensus 154 iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~-----~~~~vi~~iG~ 199 (440)
T TIGR01026 154 IDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE-----ADVNVIALIGE 199 (440)
T ss_pred eeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCEEEEEEEee
Confidence 8888 9999999999999999999999999999998 88877776554
No 478
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.12 E-value=2.6e-06 Score=78.10 Aligned_cols=118 Identities=17% Similarity=0.157 Sum_probs=89.7
Q ss_pred cCceeeEecccCCCCccccccee-----eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChH
Q 021147 145 VGDGTYFLQEYTIPRGVRHGELV-----IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 219 (317)
Q Consensus 145 ~~~~~~~~Q~~~l~~~~~~~~~~-----~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~ 219 (317)
.+++||+-|...|||++++.++. +.+|+.+..++++.+++..+|+-|. .|..+||.+.|+
T Consensus 74 Rr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~---------------~~~~RyP~eLSG 138 (309)
T COG1125 74 RRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPS---------------EYADRYPHELSG 138 (309)
T ss_pred HHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHH---------------HHhhcCchhcCc
Confidence 36799999999999999999864 5789999999999999999997553 245789999999
Q ss_pred HHHHHHHHHHHcCC-C-ccc------------------------CCCCCCEEEEeccchhcCcHHHHHhhcccceecccc
Q 021147 220 EKQYNQIVATTFNC-P-YLS------------------------FRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPP 273 (317)
Q Consensus 220 ~~~~~~~~a~~~~l-~-~~~------------------------l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p 273 (317)
+++|++-+++++.. | +.. ...+++++++||+ .+ |..+++-=-+++.+-
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHD--id----EA~kLadri~vm~~G 212 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHD--ID----EALKLADRIAVMDAG 212 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecC--HH----HHHhhhceEEEecCC
Confidence 99999999999987 2 110 3458999999996 11 334444444555555
Q ss_pred ceeeccCCCC
Q 021147 274 AKQIFDIPES 283 (317)
Q Consensus 274 ~ilIlDEPts 283 (317)
.+.=+|.|..
T Consensus 213 ~i~Q~~~P~~ 222 (309)
T COG1125 213 EIVQYDTPDE 222 (309)
T ss_pred eEEEeCCHHH
Confidence 6666666655
No 479
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.10 E-value=3.2e-06 Score=83.26 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=49.3
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
++-+.++..|..+..+ ++.+ |.+.+|++++|+|+||||||||+++|+++.. |+.+.+...|.
T Consensus 112 ~~R~~~~~~~~tGi~~-----id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~-----~~~~vi~~iGe 173 (411)
T TIGR03496 112 LKRAPIDEPLDVGVRA-----INGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTE-----ADVVVVGLIGE 173 (411)
T ss_pred HhccCcceEeeeeEEe-----ecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCC-----CCEEEEEEEec
Confidence 3444555566444333 7888 9999999999999999999999999999998 87777766665
No 480
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.07 E-value=2.2e-05 Score=81.31 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+.++|+||||||||||+++|.++..
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~ 200 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAK 200 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 356799999999999999999999986
No 481
>PRK05922 type III secretion system ATPase; Validated
Probab=98.06 E-value=4.9e-06 Score=82.20 Aligned_cols=47 Identities=23% Similarity=0.224 Sum_probs=41.9
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
++.+ +.+.+|+.++|+|+||+|||||+++|+|..+ ++.|.+...|..
T Consensus 148 ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~-----~d~gvi~liGer 194 (434)
T PRK05922 148 IDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSK-----STINVIALIGER 194 (434)
T ss_pred ecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCC-----CCceEEEEeCCC
Confidence 6665 9999999999999999999999999999998 888888766653
No 482
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=98.06 E-value=3.9e-06 Score=82.95 Aligned_cols=47 Identities=21% Similarity=0.128 Sum_probs=43.4
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
++++ +++.+|++++|+|+||||||||+++|++... ++.+.|...|.+
T Consensus 148 id~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~-----~~v~vi~~iGer 194 (434)
T PRK08472 148 IDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCL-----APIKVVALIGER 194 (434)
T ss_pred hhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccC-----CCEEEEEeeCcc
Confidence 8999 9999999999999999999999999999988 778888877764
No 483
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.04 E-value=2.2e-05 Score=71.53 Aligned_cols=32 Identities=16% Similarity=0.074 Sum_probs=25.1
Q ss_pred ccccceeeccCCCC-------CCHHHHHHHHHHHHHHHHh
Q 021147 270 GIPPAKQIFDIPES-------SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 270 ~~~p~ilIlDEPts-------LD~~t~~~l~~~l~~l~~~ 302 (317)
..+|+++|+| |.+ +|+.....+.+.+.++.+.
T Consensus 109 ~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~ 147 (239)
T cd01125 109 IRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQ 147 (239)
T ss_pred hcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 5799999999 653 5888888888888877654
No 484
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=2.7e-05 Score=81.68 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=37.6
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc--EEEE
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTY 141 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G--~I~i 141 (317)
+++.++.+++|+++++|||||+||||++..|++.+. ...| +|.+
T Consensus 175 l~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~-----~~~G~kkV~l 220 (767)
T PRK14723 175 LRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCV-----AREGADQLAL 220 (767)
T ss_pred ccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHH-----HHcCCCeEEE
Confidence 677888888999999999999999999999999986 5555 4544
No 485
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.02 E-value=3.7e-06 Score=76.06 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=22.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++||.|+||||||||++.|.+++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999999997
No 486
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.02 E-value=1e-05 Score=73.62 Aligned_cols=130 Identities=14% Similarity=0.212 Sum_probs=98.1
Q ss_pred CceeeEeccc--CCCCcccccceeecc---CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHH
Q 021147 146 GDGTYFLQEY--TIPRGVRHGELVIRR---SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 220 (317)
Q Consensus 146 ~~~~~~~Q~~--~l~~~~~~~~~~~~~---~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~ 220 (317)
+.+.||||+| .|+|..+++...... .......+++.++++.+|+-+ .+.+.++.+.+++
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~----------------~~l~R~P~eLSGG 145 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPP----------------SFLDRRPHELSGG 145 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCH----------------HHHhcCchhcChh
Confidence 4578999986 588998888754222 223344455777888888632 2346788899999
Q ss_pred HHHHHHHHHHcCC-Cccc-------------------------CCCCCCEEEEec--cchhcCcHHHHHhhcccceeccc
Q 021147 221 KQYNQIVATTFNC-PYLS-------------------------FRDDKPVVVVTH--GDLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 221 ~~~~~~~a~~~~l-~~~~-------------------------l~~~~~~~i~~h--g~~~~LSgG~~qRl~iaral~~~ 272 (317)
+.|++++|+++.. |... ...+.+.++++| +.+..+|+.... +.-++.+...
T Consensus 146 Q~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~V-m~~G~ivE~~ 224 (252)
T COG1124 146 QRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAV-MDNGQIVEIG 224 (252)
T ss_pred HHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheee-eeCCeEEEee
Confidence 9999999999988 3110 344679999999 477788888888 8999999999
Q ss_pred cceeeccCCCCCCHHHHHHHHH
Q 021147 273 PAKQIFDIPESSDPENELIIVD 294 (317)
Q Consensus 273 p~ilIlDEPtsLD~~t~~~l~~ 294 (317)
|.-.|++-|.+ ++++..+..
T Consensus 225 ~~~~l~~~~~h--~ytr~Ll~a 244 (252)
T COG1124 225 PTEELLSHPSH--PYTRELLEA 244 (252)
T ss_pred chhhhhcCCcc--HHHHHHHHh
Confidence 99999999999 888776543
No 487
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=98.02 E-value=4.4e-06 Score=82.84 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=34.1
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++++ |.|.+|++++|+|+||+|||||+++|+|+.+
T Consensus 159 ID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~ 193 (451)
T PRK05688 159 INGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTE 193 (451)
T ss_pred ecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 8999 9999999999999999999999999999987
No 488
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.01 E-value=9.7e-06 Score=75.77 Aligned_cols=32 Identities=28% Similarity=0.523 Sum_probs=27.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEE
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 141 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i 141 (317)
++||+|+||||||||++.|.+++. +..|.+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~-----~~~~~vi~ 32 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG-----SDLVTVIC 32 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC-----CCceEEEE
Confidence 489999999999999999999998 76665443
No 489
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=98.01 E-value=4.5e-06 Score=72.53 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=29.5
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++++++++.+| +++|+|||||||||++.+|.-++-
T Consensus 10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 10 FKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp EEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 77888888887 999999999999999999887775
No 490
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.01 E-value=7e-06 Score=68.51 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHh--hccc
Q 021147 106 LLLIGPKGSGKSSLVNRIS--KVFE 128 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~--Gl~~ 128 (317)
++|+|++|||||||++.|. +...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~ 26 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLA 26 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcee
Confidence 6899999999999999999 6666
No 491
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.00 E-value=2.6e-06 Score=86.74 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=44.5
Q ss_pred hhcCcHHHHHhhcccceec----------cccceeeccCCC-C-CCHHHHHHHHHHHHHH
Q 021147 252 LLSLTDRARIRTYLGELLG----------IPPAKQIFDIPE-S-SDPENELIIVDMLRYC 299 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~----------~~p~ilIlDEPt-s-LD~~t~~~l~~~l~~l 299 (317)
+..||+||+||+++|++++ .+|+++|||||+ + ||+.+...+.+.|.++
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~ 525 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL 525 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC
Confidence 4689999999999999987 599999999998 7 9999999999999987
No 492
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.99 E-value=4.9e-06 Score=78.36 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=31.3
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
.++||.|+||||||||+++|.+++..- |.+|+|.+-+.+
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~---~~~g~V~vi~~D 101 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRW---PEHRKVELITTD 101 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhc---CCCCceEEEecc
Confidence 489999999999999999999998622 557777764443
No 493
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.99 E-value=4.8e-06 Score=72.09 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=24.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|++++|+||||||||||++.|++.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 78999999999999999999999875
No 494
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=97.96 E-value=4.3e-06 Score=85.66 Aligned_cols=48 Identities=17% Similarity=0.066 Sum_probs=44.5
Q ss_pred hcCcHHHHHhhcccceeccc----cceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGIP----PAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~----p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
..|||||+||+++|++++.. |+++|||||++ ||+.+...+.+.|+++.
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~ 491 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS 491 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh
Confidence 47899999999999999875 69999999999 99999999999999875
No 495
>PRK10869 recombination and repair protein; Provisional
Probab=97.95 E-value=4.5e-06 Score=85.30 Aligned_cols=48 Identities=15% Similarity=0.038 Sum_probs=44.5
Q ss_pred hcCcHHHHHhhcccceecc----ccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGI----PPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~----~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
..+||||+||+++|++++. +|+++|||||++ ||..+...+.+.++++.
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~ 481 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLG 481 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh
Confidence 3579999999999999997 589999999999 99999999999999884
No 496
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.95 E-value=5.7e-06 Score=71.90 Aligned_cols=51 Identities=12% Similarity=0.193 Sum_probs=37.3
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCC---CCCCcCcEEEECcc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFEND---KFASERAQVTYNSS 144 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~---~~~p~~G~I~i~g~ 144 (317)
|+++++..+++++ +|+|++|||||||++.+.+-.... ...|..+++.+++.
T Consensus 10 ~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~ 63 (190)
T cd00879 10 LSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNI 63 (190)
T ss_pred HHHhhcccCCCEE-EEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCE
Confidence 8889999888776 999999999999999998732100 11245666766654
No 497
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.95 E-value=7.2e-06 Score=81.04 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=33.1
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++.+ |.+.+|++++|+|+||||||||+++|++...
T Consensus 153 ID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~ 187 (444)
T PRK08972 153 INAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTT 187 (444)
T ss_pred ecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCC
Confidence 6667 9999999999999999999999999999887
No 498
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.92 E-value=8e-06 Score=77.94 Aligned_cols=40 Identities=18% Similarity=0.439 Sum_probs=36.2
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
++|++++|+|||||||||++..|++.+. +..++|.+.+.+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~-----~~g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK-----AQGKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH-----hcCCeEEEEecC
Confidence 5789999999999999999999999998 878899987654
No 499
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.92 E-value=7.8e-05 Score=79.67 Aligned_cols=35 Identities=20% Similarity=0.043 Sum_probs=30.3
Q ss_pred eeccccceeeccCCCC-C-CHHHHHHHHHHHHHHHHh
Q 021147 268 LLGIPPAKQIFDIPES-S-DPENELIIVDMLRYCLEH 302 (317)
Q Consensus 268 al~~~p~ilIlDEPts-L-D~~t~~~l~~~l~~l~~~ 302 (317)
.+..+|+++++|||.. | |+.....+.+.++.+.+.
T Consensus 648 ~l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~ 684 (818)
T PRK13830 648 RLTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKA 684 (818)
T ss_pred hcCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHc
Confidence 3467999999999999 9 799999999999987653
No 500
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.91 E-value=1.2e-05 Score=71.26 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=34.3
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
++|.+++|+|+||||||||+++|.+.+.+ ...|.+.++|.+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~----~~~~~~~ld~d~ 62 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE----LGVSTYLLDGDN 62 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh----CCCCEEEEcCEe
Confidence 67899999999999999999999998751 235689988864
Done!