Query 021147
Match_columns 317
No_of_seqs 315 out of 2747
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 13:25:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021147.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021147hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nh6_A ATP-binding cassette SU 100.0 4.2E-46 1.4E-50 350.5 10.9 226 43-317 17-258 (306)
2 4f4c_A Multidrug resistance pr 100.0 7E-44 2.4E-48 390.1 14.7 226 29-300 1026-1264(1321)
3 4a82_A Cystic fibrosis transme 100.0 1.6E-43 5.5E-48 358.8 15.6 240 29-317 289-545 (578)
4 4f4c_A Multidrug resistance pr 100.0 1.9E-43 6.5E-48 386.7 15.9 239 29-316 364-621 (1321)
5 3qf4_B Uncharacterized ABC tra 100.0 1.5E-43 5E-48 360.5 13.6 240 29-317 305-559 (598)
6 3gfo_A Cobalt import ATP-bindi 100.0 6.1E-43 2.1E-47 324.5 16.2 198 70-317 6-214 (275)
7 3qf4_A ABC transporter, ATP-bi 100.0 3.5E-43 1.2E-47 357.0 15.2 238 31-317 293-547 (587)
8 3b5x_A Lipid A export ATP-bind 100.0 7.8E-43 2.7E-47 354.0 15.5 241 29-317 293-548 (582)
9 3b60_A Lipid A export ATP-bind 100.0 8.1E-43 2.8E-47 353.9 14.4 241 29-317 293-548 (582)
10 3tui_C Methionine import ATP-b 100.0 2.9E-42 9.9E-47 330.8 16.8 205 68-317 21-234 (366)
11 4g1u_C Hemin import ATP-bindin 100.0 7.9E-42 2.7E-46 315.5 17.4 197 68-317 8-218 (266)
12 2yl4_A ATP-binding cassette SU 100.0 3.6E-42 1.2E-46 350.0 14.6 243 29-317 290-551 (595)
13 1g6h_A High-affinity branched- 100.0 1.8E-41 6.2E-46 311.4 17.9 197 69-317 5-223 (257)
14 3tif_A Uncharacterized ABC tra 100.0 1.6E-41 5.5E-46 308.0 17.2 200 71-317 1-215 (235)
15 2pcj_A ABC transporter, lipopr 100.0 1.8E-41 6.3E-46 305.4 17.2 199 70-317 3-209 (224)
16 2olj_A Amino acid ABC transpor 100.0 1.9E-41 6.5E-46 312.6 17.1 196 70-317 23-229 (263)
17 1ji0_A ABC transporter; ATP bi 100.0 1.9E-41 6.5E-46 308.3 14.7 197 70-317 5-209 (240)
18 2ff7_A Alpha-hemolysin translo 100.0 2.5E-41 8.6E-46 308.9 13.9 198 71-317 7-213 (247)
19 3rlf_A Maltose/maltodextrin im 100.0 2.4E-41 8.1E-46 326.2 14.4 195 69-317 1-204 (381)
20 1vpl_A ABC transporter, ATP-bi 100.0 3.1E-41 1.1E-45 310.0 14.5 197 68-317 12-216 (256)
21 1b0u_A Histidine permease; ABC 100.0 5.8E-41 2E-45 309.0 16.2 196 70-317 5-223 (262)
22 3fvq_A Fe(3+) IONS import ATP- 100.0 3.2E-41 1.1E-45 323.1 13.7 197 71-317 4-209 (359)
23 2ihy_A ABC transporter, ATP-bi 100.0 1.6E-40 5.6E-45 308.7 15.4 198 69-317 19-233 (279)
24 2it1_A 362AA long hypothetical 100.0 2.2E-40 7.6E-45 318.0 15.8 194 70-317 2-204 (362)
25 2yz2_A Putative ABC transporte 100.0 2.6E-40 8.9E-45 305.2 15.5 194 71-317 2-208 (266)
26 2yyz_A Sugar ABC transporter, 100.0 2E-40 6.7E-45 318.0 14.5 194 70-317 2-204 (359)
27 3d31_A Sulfate/molybdate ABC t 100.0 3E-40 1E-44 315.6 15.8 190 71-317 1-198 (348)
28 1z47_A CYSA, putative ABC-tran 100.0 2.7E-40 9.2E-45 316.5 14.6 195 69-317 12-216 (355)
29 1mv5_A LMRA, multidrug resista 100.0 2.1E-41 7.1E-46 308.5 6.0 199 71-317 1-207 (243)
30 2ghi_A Transport protein; mult 100.0 4.7E-40 1.6E-44 302.6 15.1 199 69-317 15-223 (260)
31 1sgw_A Putative ABC transporte 100.0 2.3E-40 8E-45 296.6 12.4 189 69-317 8-203 (214)
32 3g5u_A MCG1178, multidrug resi 100.0 3E-40 1E-44 360.6 15.8 237 32-317 339-594 (1284)
33 1oxx_K GLCV, glucose, ABC tran 100.0 1.5E-40 5E-45 318.5 11.5 195 70-317 2-211 (353)
34 1g29_1 MALK, maltose transport 100.0 3.9E-40 1.3E-44 317.5 14.1 194 70-317 2-210 (372)
35 2ixe_A Antigen peptide transpo 100.0 3.3E-40 1.1E-44 305.4 12.9 198 69-317 14-226 (271)
36 1v43_A Sugar-binding transport 100.0 3.2E-40 1.1E-44 318.0 12.9 195 69-317 9-212 (372)
37 2d2e_A SUFC protein; ABC-ATPas 100.0 8.1E-40 2.8E-44 299.3 14.3 197 70-317 2-214 (250)
38 2onk_A Molybdate/tungstate ABC 100.0 7.4E-40 2.5E-44 298.1 13.0 189 71-317 1-197 (240)
39 2qi9_C Vitamin B12 import ATP- 100.0 5.8E-39 2E-43 293.7 15.6 186 71-317 4-203 (249)
40 2nq2_C Hypothetical ABC transp 100.0 1.8E-38 6.2E-43 291.0 15.9 183 71-317 4-199 (253)
41 2zu0_C Probable ATP-dependent 100.0 1.5E-38 5E-43 293.7 14.5 199 69-317 18-235 (267)
42 3gd7_A Fusion complex of cysti 100.0 1.2E-38 4.2E-43 308.7 13.6 199 68-317 16-223 (390)
43 2cbz_A Multidrug resistance-as 100.0 1.6E-38 5.4E-43 288.6 11.1 185 70-317 2-198 (237)
44 3g5u_A MCG1178, multidrug resi 100.0 6.6E-39 2.3E-43 350.1 10.1 231 40-317 990-1239(1284)
45 2pze_A Cystic fibrosis transme 100.0 4.3E-38 1.5E-42 284.3 10.0 185 70-317 5-199 (229)
46 2pjz_A Hypothetical protein ST 100.0 1.2E-37 4.1E-42 287.2 9.4 186 71-317 1-196 (263)
47 2bbs_A Cystic fibrosis transme 100.0 2.3E-35 7.9E-40 275.5 8.0 182 69-317 38-228 (290)
48 3ozx_A RNAse L inhibitor; ATP 100.0 4.5E-32 1.5E-36 272.7 9.8 181 70-317 268-456 (538)
49 3bk7_A ABC transporter ATP-bin 100.0 3.8E-31 1.3E-35 269.3 11.4 178 70-317 356-542 (607)
50 1yqt_A RNAse L inhibitor; ATP- 100.0 3.9E-31 1.3E-35 266.0 9.7 178 70-317 286-472 (538)
51 3bk7_A ABC transporter ATP-bin 100.0 1.9E-30 6.4E-35 264.2 12.7 201 69-317 81-298 (607)
52 1yqt_A RNAse L inhibitor; ATP- 100.0 2.7E-30 9.1E-35 259.9 12.4 189 72-317 21-228 (538)
53 2iw3_A Elongation factor 3A; a 100.0 2.8E-30 9.5E-35 273.0 5.4 229 69-317 669-968 (986)
54 3j16_B RLI1P; ribosome recycli 100.0 7E-29 2.4E-33 252.5 9.7 176 75-317 350-538 (608)
55 3j16_B RLI1P; ribosome recycli 99.9 7.8E-29 2.7E-33 252.2 1.2 196 76-317 82-291 (608)
56 3ux8_A Excinuclease ABC, A sub 99.9 2.3E-27 7.9E-32 244.0 7.9 187 93-317 34-273 (670)
57 2iw3_A Elongation factor 3A; a 99.9 8.9E-27 3.1E-31 246.3 12.4 176 70-317 434-615 (986)
58 3ozx_A RNAse L inhibitor; ATP 99.9 1.3E-27 4.5E-32 240.2 5.6 183 75-317 3-207 (538)
59 3ux8_A Excinuclease ABC, A sub 99.9 2.9E-26 9.9E-31 235.9 12.3 114 187-317 492-615 (670)
60 2vf7_A UVRA2, excinuclease ABC 99.9 1E-23 3.4E-28 220.8 14.0 85 222-317 708-802 (842)
61 2v9p_A Replication protein E1; 99.9 2.5E-26 8.4E-31 215.7 -8.1 184 33-317 57-248 (305)
62 2npi_A Protein CLP1; CLP1-PCF1 99.9 8.8E-27 3E-31 230.1 -12.9 158 69-298 116-286 (460)
63 4aby_A DNA repair protein RECN 99.9 8.4E-24 2.9E-28 204.6 6.2 61 255-316 296-364 (415)
64 2r6f_A Excinuclease ABC subuni 99.9 9.5E-23 3.3E-27 214.5 14.6 101 201-317 807-917 (972)
65 3pih_A Uvrabc system protein A 99.9 2.8E-23 9.4E-28 219.1 9.5 102 200-317 766-877 (916)
66 2ygr_A Uvrabc system protein A 99.9 3.2E-22 1.1E-26 211.2 13.2 210 70-317 646-935 (993)
67 3aez_A Pantothenate kinase; tr 99.9 2.9E-24 9.8E-29 202.3 -4.2 165 48-285 15-208 (312)
68 1z6g_A Guanylate kinase; struc 99.9 2.7E-24 9.1E-29 192.0 -4.2 156 93-301 13-175 (218)
69 4gp7_A Metallophosphoesterase; 99.9 2E-22 6.9E-27 173.0 4.1 49 254-302 83-148 (171)
70 3b85_A Phosphate starvation-in 99.8 1.8E-23 6.3E-28 186.0 -7.3 126 93-299 16-146 (208)
71 1tq4_A IIGP1, interferon-induc 99.8 4.7E-23 1.6E-27 200.7 -5.8 142 93-300 39-213 (413)
72 1e69_A Chromosome segregation 99.8 1.1E-19 3.9E-24 171.0 9.7 49 252-300 217-270 (322)
73 1ye8_A Protein THEP1, hypothet 99.8 1E-20 3.5E-25 164.1 0.1 64 253-316 75-152 (178)
74 3b9q_A Chloroplast SRP recepto 99.8 1.8E-20 6E-25 175.7 1.3 145 93-289 90-238 (302)
75 3sop_A Neuronal-specific septi 99.8 3.4E-21 1.2E-25 177.8 -3.9 127 105-289 4-131 (270)
76 3qf7_A RAD50; ABC-ATPase, ATPa 99.7 1.3E-18 4.5E-23 166.9 8.4 66 251-317 276-354 (365)
77 2dpy_A FLII, flagellum-specifi 99.7 7.7E-20 2.6E-24 179.5 -0.7 165 70-301 130-296 (438)
78 2og2_A Putative signal recogni 99.7 1.2E-19 4.3E-24 173.7 0.7 145 94-290 148-296 (359)
79 2pt7_A CAG-ALFA; ATPase, prote 99.7 4.8E-20 1.6E-24 174.7 -6.6 48 93-145 161-208 (330)
80 1znw_A Guanylate kinase, GMP k 99.7 3.6E-20 1.2E-24 163.3 -8.4 165 93-317 12-198 (207)
81 1pui_A ENGB, probable GTP-bind 99.7 9.8E-19 3.3E-23 152.5 -0.2 188 71-300 3-197 (210)
82 2f1r_A Molybdopterin-guanine d 99.7 2.6E-17 9E-22 141.9 4.4 136 104-300 3-160 (171)
83 2jeo_A Uridine-cytidine kinase 99.7 3.2E-17 1.1E-21 148.1 4.4 131 93-287 15-149 (245)
84 2eyu_A Twitching motility prot 99.6 1.6E-18 5.4E-23 159.1 -5.2 65 71-154 5-70 (261)
85 2o8b_B DNA mismatch repair pro 99.6 2.2E-16 7.6E-21 168.8 8.6 152 69-316 748-921 (1022)
86 2vf7_A UVRA2, excinuclease ABC 99.6 1.8E-15 6.1E-20 158.5 14.2 83 224-317 359-450 (842)
87 3asz_A Uridine kinase; cytidin 99.6 6.7E-17 2.3E-21 141.8 1.6 133 99-299 2-146 (211)
88 1tf7_A KAIC; homohexamer, hexa 99.6 1E-16 3.6E-21 160.3 3.0 64 71-145 12-78 (525)
89 2obl_A ESCN; ATPase, hydrolase 99.6 3.1E-16 1.1E-20 149.5 4.0 66 69-145 43-108 (347)
90 2ehv_A Hypothetical protein PH 99.6 1.7E-16 5.7E-21 141.8 1.9 60 70-144 5-68 (251)
91 2qnr_A Septin-2, protein NEDD5 99.6 1.5E-16 5.3E-21 148.6 1.6 142 75-289 2-146 (301)
92 1cr0_A DNA primase/helicase; R 99.6 3.9E-16 1.3E-20 144.4 4.0 150 93-302 25-185 (296)
93 1lw7_A Transcriptional regulat 99.6 8.3E-17 2.8E-21 153.9 -1.1 150 93-283 158-330 (365)
94 2qag_C Septin-7; cell cycle, c 99.6 1.6E-16 5.5E-21 154.9 0.6 145 69-289 9-158 (418)
95 3szr_A Interferon-induced GTP- 99.6 4.9E-17 1.7E-21 165.6 -4.2 155 71-301 10-182 (608)
96 2o5v_A DNA replication and rep 99.6 2.2E-15 7.4E-20 144.3 6.6 49 251-299 261-320 (359)
97 1tf7_A KAIC; homohexamer, hexa 99.6 8E-16 2.7E-20 153.9 2.6 48 253-301 352-405 (525)
98 1rj9_A FTSY, signal recognitio 99.5 3E-15 1E-19 140.2 5.8 127 102-280 101-230 (304)
99 2ewv_A Twitching motility prot 99.5 1.9E-16 6.3E-21 152.3 -4.2 149 93-287 128-317 (372)
100 2i3b_A HCR-ntpase, human cance 99.5 4E-16 1.4E-20 136.5 -1.8 127 103-298 1-134 (189)
101 2qm8_A GTPase/ATPase; G protei 99.5 4.8E-17 1.6E-21 154.4 -9.3 65 70-145 28-92 (337)
102 3qkt_A DNA double-strand break 99.5 5.3E-14 1.8E-18 133.2 11.0 51 251-301 245-302 (339)
103 4ad8_A DNA repair protein RECN 99.5 2E-14 7E-19 143.4 7.6 50 252-301 394-447 (517)
104 3thx_B DNA mismatch repair pro 99.5 2.7E-14 9.1E-19 151.0 7.3 48 253-301 734-783 (918)
105 1pzn_A RAD51, DNA repair and r 99.5 6.9E-15 2.3E-19 140.2 2.5 121 93-287 120-247 (349)
106 1htw_A HI0065; nucleotide-bind 99.5 6.1E-16 2.1E-20 131.7 -5.0 59 75-145 11-69 (158)
107 4a74_A DNA repair and recombin 99.5 6.1E-15 2.1E-19 130.0 1.2 46 99-144 21-68 (231)
108 1ewq_A DNA mismatch repair pro 99.5 5.5E-14 1.9E-18 146.3 8.0 130 69-298 548-686 (765)
109 2gza_A Type IV secretion syste 99.5 1.8E-15 6E-20 144.9 -3.2 129 93-267 165-300 (361)
110 3c8u_A Fructokinase; YP_612366 99.5 1.3E-14 4.3E-19 127.7 2.5 138 100-299 19-169 (208)
111 1lvg_A Guanylate kinase, GMP k 99.5 4.7E-15 1.6E-19 129.9 -0.4 141 101-301 2-154 (198)
112 2bbw_A Adenylate kinase 4, AK4 99.4 1E-14 3.4E-19 131.5 0.2 145 102-301 26-198 (246)
113 2w0m_A SSO2452; RECA, SSPF, un 99.4 2.2E-14 7.4E-19 126.2 2.3 139 93-302 12-156 (235)
114 2qag_B Septin-6, protein NEDD5 99.4 3.1E-15 1.1E-19 145.9 -3.6 170 71-300 16-205 (427)
115 1w1w_A Structural maintenance 99.4 3.4E-13 1.1E-17 131.5 9.4 48 253-300 332-384 (430)
116 1p9r_A General secretion pathw 99.4 1.2E-15 4E-20 148.9 -8.1 142 93-277 159-314 (418)
117 1zp6_A Hypothetical protein AT 99.4 7.8E-14 2.7E-18 120.0 3.2 140 99-299 5-147 (191)
118 3thx_A DNA mismatch repair pro 99.4 6E-13 2.1E-17 141.0 9.8 51 70-125 630-684 (934)
119 1odf_A YGR205W, hypothetical 3 99.4 2.5E-13 8.6E-18 126.3 4.9 127 101-288 29-169 (290)
120 1sq5_A Pantothenate kinase; P- 99.3 3.5E-14 1.2E-18 132.8 -2.4 65 69-144 35-121 (308)
121 2yhs_A FTSY, cell division pro 99.3 4.9E-13 1.7E-17 132.4 5.4 89 93-210 283-371 (503)
122 2x8a_A Nuclear valosin-contain 99.3 6.3E-14 2.2E-18 129.1 -1.3 142 93-296 36-190 (274)
123 3e70_C DPA, signal recognition 99.3 2.5E-12 8.6E-17 121.5 8.1 81 99-210 125-207 (328)
124 1nlf_A Regulatory protein REPA 99.3 6.3E-12 2.2E-16 115.2 8.5 30 99-128 26-55 (279)
125 3jvv_A Twitching mobility prot 99.3 3.2E-12 1.1E-16 122.1 6.6 59 75-142 92-158 (356)
126 2rcn_A Probable GTPase ENGC; Y 99.2 5.4E-13 1.9E-17 127.5 -0.2 122 93-269 206-328 (358)
127 1wb9_A DNA mismatch repair pro 99.2 2.8E-12 9.7E-17 134.1 4.6 35 93-128 598-632 (800)
128 1nij_A Hypothetical protein YJ 99.2 3.7E-14 1.3E-18 133.3 -9.6 37 104-145 5-49 (318)
129 1ixz_A ATP-dependent metallopr 99.2 6.9E-13 2.4E-17 119.6 -2.1 128 93-280 41-169 (254)
130 3euj_A Chromosome partition pr 99.2 8.2E-12 2.8E-16 123.6 5.3 47 93-145 20-66 (483)
131 1iy2_A ATP-dependent metallopr 99.2 6.2E-13 2.1E-17 121.8 -2.6 125 93-275 65-190 (278)
132 3pih_A Uvrabc system protein A 99.2 2.7E-12 9.3E-17 135.6 1.0 84 223-317 443-535 (916)
133 2yv5_A YJEQ protein; hydrolase 99.2 3.2E-13 1.1E-17 126.1 -5.6 124 98-267 160-300 (302)
134 2cvh_A DNA repair and recombin 99.2 1E-11 3.6E-16 108.5 3.4 44 93-143 9-53 (220)
135 1f2t_B RAD50 ABC-ATPase; DNA d 99.2 1.6E-11 5.4E-16 103.2 4.1 65 252-317 55-132 (148)
136 1u0l_A Probable GTPase ENGC; p 99.1 1.9E-12 6.7E-17 120.6 -2.1 43 98-145 164-209 (301)
137 1in4_A RUVB, holliday junction 99.1 1.8E-13 6.1E-18 129.2 -9.6 66 71-143 18-90 (334)
138 1n0w_A DNA repair protein RAD5 99.1 1.3E-10 4.3E-15 103.1 8.9 47 99-145 20-68 (243)
139 1vma_A Cell division protein F 99.1 2.8E-11 9.4E-16 113.4 4.6 45 96-145 97-141 (306)
140 2bdt_A BH3686; alpha-beta prot 99.1 1.6E-11 5.4E-16 105.6 0.2 35 103-145 2-36 (189)
141 1udx_A The GTP-binding protein 99.1 9.3E-12 3.2E-16 121.2 -1.7 35 93-127 147-181 (416)
142 1s96_A Guanylate kinase, GMP k 99.0 2.6E-11 9E-16 108.1 0.7 66 93-161 6-77 (219)
143 3tr0_A Guanylate kinase, GMP k 99.0 5.2E-11 1.8E-15 103.1 2.2 32 97-128 1-32 (205)
144 2ygr_A Uvrabc system protein A 99.0 2E-10 6.9E-15 121.6 7.0 107 200-317 468-592 (993)
145 2r6f_A Excinuclease ABC subuni 99.0 1.4E-10 4.8E-15 122.5 5.7 107 200-317 451-575 (972)
146 3lnc_A Guanylate kinase, GMP k 99.0 1E-10 3.6E-15 103.9 3.1 36 93-128 17-53 (231)
147 1ls1_A Signal recognition part 99.0 5.6E-10 1.9E-14 103.8 8.0 59 72-145 77-135 (295)
148 3lda_A DNA repair protein RAD5 99.0 4.9E-10 1.7E-14 108.5 7.4 47 99-145 174-222 (400)
149 2kjq_A DNAA-related protein; s 99.0 5.9E-10 2E-14 93.4 6.2 31 93-128 31-61 (149)
150 1oix_A RAS-related protein RAB 99.0 5.2E-11 1.8E-15 102.6 -0.9 37 261-299 152-189 (191)
151 3nwj_A ATSK2; P loop, shikimat 98.9 8.5E-11 2.9E-15 107.0 -0.3 54 70-128 16-73 (250)
152 1sxj_E Activator 1 40 kDa subu 98.9 1.2E-09 4.1E-14 102.5 7.4 124 104-299 37-161 (354)
153 3k1j_A LON protease, ATP-depen 98.9 4E-11 1.4E-15 121.8 -3.1 48 93-145 50-98 (604)
154 3ec2_A DNA replication protein 98.8 4.8E-09 1.6E-13 89.3 7.6 36 97-137 32-67 (180)
155 1qhl_A Protein (cell division 98.8 9.7E-11 3.3E-15 105.2 -3.3 56 71-145 9-64 (227)
156 1svm_A Large T antigen; AAA+ f 98.8 2.3E-09 7.7E-14 103.1 5.5 36 93-128 159-194 (377)
157 3kta_B Chromosome segregation 98.8 1.5E-09 5.1E-14 93.4 3.2 49 253-301 63-116 (173)
158 1t9h_A YLOQ, probable GTPase E 98.8 1.3E-09 4.4E-14 102.1 2.0 43 98-145 168-213 (307)
159 2oap_1 GSPE-2, type II secreti 98.8 1.4E-09 4.8E-14 108.5 1.6 48 93-145 250-297 (511)
160 2dhr_A FTSH; AAA+ protein, hex 98.7 1.7E-09 5.8E-14 107.6 0.7 44 93-145 56-99 (499)
161 4e22_A Cytidylate kinase; P-lo 98.7 2.7E-09 9.1E-14 96.6 1.3 35 101-140 25-62 (252)
162 3uie_A Adenylyl-sulfate kinase 98.7 1.8E-09 6.3E-14 93.8 0.2 59 75-145 3-63 (200)
163 3kta_A Chromosome segregation 98.7 1.8E-08 6.2E-13 85.7 5.9 34 94-128 18-51 (182)
164 2ius_A DNA translocase FTSK; n 98.7 1.3E-09 4.5E-14 108.5 -1.5 155 95-302 159-327 (512)
165 4eun_A Thermoresistant glucoki 98.7 2.1E-08 7.2E-13 87.1 5.7 41 96-145 22-62 (200)
166 2f9l_A RAB11B, member RAS onco 98.6 9.3E-09 3.2E-13 88.6 2.4 36 263-300 130-166 (199)
167 2j41_A Guanylate kinase; GMP, 98.6 2E-08 6.8E-13 86.7 3.7 31 98-128 1-31 (207)
168 3vaa_A Shikimate kinase, SK; s 98.6 2.2E-08 7.7E-13 86.8 3.5 36 93-128 15-50 (199)
169 1zu4_A FTSY; GTPase, signal re 98.6 6.6E-08 2.2E-12 90.9 6.4 48 93-145 95-142 (320)
170 2px0_A Flagellar biosynthesis 98.5 1.2E-07 4E-12 88.1 7.1 39 101-144 103-142 (296)
171 3a00_A Guanylate kinase, GMP k 98.5 3.9E-08 1.3E-12 84.5 2.9 26 103-128 1-26 (186)
172 1kgd_A CASK, peripheral plasma 98.5 4.4E-08 1.5E-12 83.8 3.0 27 102-128 4-30 (180)
173 2r6a_A DNAB helicase, replicat 98.4 1.1E-06 3.7E-11 86.0 10.9 131 93-285 193-327 (454)
174 3auy_A DNA double-strand break 98.4 8.5E-08 2.9E-12 91.5 2.7 59 241-299 264-333 (371)
175 1rz3_A Hypothetical protein rb 98.4 1.1E-07 3.6E-12 82.8 2.9 42 99-145 18-59 (201)
176 2dr3_A UPF0273 protein PH0284; 98.4 4E-07 1.4E-11 80.3 6.4 36 93-128 12-49 (247)
177 3ney_A 55 kDa erythrocyte memb 98.4 3.4E-07 1.2E-11 80.2 5.3 32 97-128 13-44 (197)
178 3ice_A Transcription terminati 98.3 1.1E-07 3.6E-12 91.6 1.5 55 69-128 131-199 (422)
179 3tqc_A Pantothenate kinase; bi 98.3 1.3E-07 4.5E-12 88.9 1.7 48 93-143 76-129 (321)
180 2qtf_A Protein HFLX, GTP-bindi 98.3 1.2E-06 4.1E-11 83.6 7.5 41 105-145 181-227 (364)
181 3cr8_A Sulfate adenylyltranfer 98.3 2.4E-07 8.1E-12 93.2 2.7 42 99-145 365-408 (552)
182 3tau_A Guanylate kinase, GMP k 98.3 4.4E-07 1.5E-11 79.3 3.9 28 101-128 6-33 (208)
183 2vp4_A Deoxynucleoside kinase; 98.3 2.3E-07 7.9E-12 82.4 2.0 41 96-145 13-53 (230)
184 1cke_A CK, MSSA, protein (cyti 98.2 9E-08 3.1E-12 84.0 -1.2 34 103-141 5-41 (227)
185 1ni3_A YCHF GTPase, YCHF GTP-b 98.1 1.2E-06 4.3E-11 84.4 4.2 46 99-144 16-68 (392)
186 2zr9_A Protein RECA, recombina 98.1 4.7E-06 1.6E-10 79.1 7.4 30 99-128 57-86 (349)
187 1knq_A Gluconate kinase; ALFA/ 98.1 1.3E-06 4.4E-11 73.6 3.1 36 101-145 6-41 (175)
188 1kag_A SKI, shikimate kinase I 98.1 1.5E-06 5.3E-11 72.7 3.4 27 102-128 3-29 (173)
189 2pez_A Bifunctional 3'-phospho 98.0 2E-06 6.9E-11 72.8 3.3 38 101-144 3-42 (179)
190 2p67_A LAO/AO transport system 98.0 8.9E-07 3.1E-11 83.5 0.9 62 72-144 31-92 (341)
191 2qt1_A Nicotinamide riboside k 98.0 1.9E-06 6.6E-11 74.7 2.8 31 98-128 16-46 (207)
192 1m7g_A Adenylylsulfate kinase; 98.0 1.9E-06 6.3E-11 75.2 1.7 44 97-145 19-64 (211)
193 1f2t_A RAD50 ABC-ATPase; DNA d 98.0 5.2E-06 1.8E-10 69.1 4.2 34 93-127 14-47 (149)
194 2xau_A PRE-mRNA-splicing facto 98.0 1.6E-05 5.5E-10 82.9 8.8 44 253-296 189-234 (773)
195 4eaq_A DTMP kinase, thymidylat 97.9 5E-06 1.7E-10 74.1 4.0 43 93-141 13-58 (229)
196 3m6a_A ATP-dependent protease 97.9 2.1E-06 7.2E-11 86.1 1.5 45 93-143 99-143 (543)
197 2www_A Methylmalonic aciduria 97.9 5.6E-06 1.9E-10 78.4 3.2 40 101-145 72-111 (349)
198 4a1f_A DNAB helicase, replicat 97.8 9.4E-06 3.2E-10 76.8 4.4 36 93-128 36-71 (338)
199 1ypw_A Transitional endoplasmi 97.8 3.1E-06 1E-10 88.7 0.6 42 97-145 232-273 (806)
200 3tui_C Methionine import ATP-b 97.8 1.7E-05 5.8E-10 75.8 5.2 129 146-294 105-266 (366)
201 1f6b_A SAR1; gtpases, N-termin 97.8 5.3E-06 1.8E-10 71.3 1.5 60 78-144 6-69 (198)
202 2ffh_A Protein (FFH); SRP54, s 97.8 1E-05 3.6E-10 78.7 3.5 58 73-145 78-135 (425)
203 1y63_A LMAJ004144AAA protein; 97.8 1.2E-05 4E-10 68.7 3.3 32 95-126 2-33 (184)
204 3hr8_A Protein RECA; alpha and 97.7 2.7E-05 9.4E-10 74.1 5.7 41 99-144 57-98 (356)
205 2yvu_A Probable adenylyl-sulfa 97.7 1.4E-05 4.7E-10 68.0 3.2 41 98-143 8-49 (186)
206 2qor_A Guanylate kinase; phosp 97.7 1.4E-05 4.7E-10 69.3 3.2 30 99-128 8-37 (204)
207 2dy1_A Elongation factor G; tr 97.7 8.6E-06 3E-10 83.5 2.2 44 97-144 3-46 (665)
208 3t34_A Dynamin-related protein 97.7 1.2E-05 4.1E-10 76.1 2.8 33 93-128 27-61 (360)
209 1j8m_F SRP54, signal recogniti 97.7 8.2E-06 2.8E-10 75.7 1.4 59 73-145 76-135 (297)
210 1m2o_B GTP-binding protein SAR 97.7 2.4E-05 8.2E-10 66.6 4.2 50 93-143 14-66 (190)
211 1jjv_A Dephospho-COA kinase; P 97.7 1.9E-05 6.6E-10 68.1 3.3 22 105-126 4-25 (206)
212 3qks_A DNA double-strand break 97.7 2.8E-05 9.5E-10 67.8 4.2 34 93-127 14-47 (203)
213 3kl4_A SRP54, signal recogniti 97.6 0.00018 6.2E-09 70.1 8.8 38 102-144 96-133 (433)
214 2if2_A Dephospho-COA kinase; a 97.6 3.3E-05 1.1E-09 66.4 3.1 21 105-125 3-23 (204)
215 2qag_A Septin-2, protein NEDD5 97.5 6.6E-06 2.3E-10 78.3 -1.9 48 69-128 15-62 (361)
216 3fvq_A Fe(3+) IONS import ATP- 97.5 3.2E-05 1.1E-09 73.6 2.7 120 146-283 80-232 (359)
217 3rlf_A Maltose/maltodextrin im 97.5 1.5E-05 5.2E-10 76.5 0.3 125 146-290 75-232 (381)
218 1fnn_A CDC6P, cell division co 97.5 0.00025 8.6E-09 66.3 8.6 24 105-128 46-69 (389)
219 3t61_A Gluconokinase; PSI-biol 97.5 4.6E-05 1.6E-09 65.6 3.1 26 103-128 18-43 (202)
220 2ga8_A Hypothetical 39.9 kDa p 97.5 1.9E-05 6.4E-10 75.1 0.6 36 93-128 12-49 (359)
221 2gj8_A MNME, tRNA modification 97.5 4.7E-05 1.6E-09 63.8 2.9 27 101-127 2-28 (172)
222 1np6_A Molybdopterin-guanine d 97.5 8.1E-05 2.8E-09 63.6 4.1 39 104-144 7-45 (174)
223 2p5t_B PEZT; postsegregational 97.4 4.7E-05 1.6E-09 68.4 2.5 40 99-145 28-67 (253)
224 1mky_A Probable GTP-binding pr 97.4 9.7E-05 3.3E-09 71.8 4.6 41 105-145 182-229 (439)
225 2ohf_A Protein OLA1, GTP-bindi 97.4 7.5E-05 2.6E-09 72.0 3.5 46 99-144 18-69 (396)
226 3cm0_A Adenylate kinase; ATP-b 97.4 6.9E-05 2.4E-09 63.2 2.8 27 101-127 2-28 (186)
227 3kb2_A SPBC2 prophage-derived 97.4 8.4E-05 2.9E-09 61.5 3.3 24 105-128 3-26 (173)
228 3bh0_A DNAB-like replicative h 97.4 9.2E-05 3.1E-09 68.9 3.9 36 93-128 58-93 (315)
229 2wjg_A FEOB, ferrous iron tran 97.4 0.00011 3.9E-09 61.5 3.9 22 105-126 9-30 (188)
230 1qhx_A CPT, protein (chloramph 97.4 0.0001 3.6E-09 61.6 3.7 26 103-128 3-28 (178)
231 1lv7_A FTSH; alpha/beta domain 97.3 7E-05 2.4E-09 66.8 2.6 44 93-145 37-80 (257)
232 1sxj_C Activator 1 40 kDa subu 97.3 3.1E-05 1.1E-09 72.3 0.2 36 93-128 34-71 (340)
233 1ega_A Protein (GTP-binding pr 97.3 6.9E-05 2.4E-09 69.3 2.1 25 103-127 8-32 (301)
234 1q3t_A Cytidylate kinase; nucl 97.3 0.00012 4E-09 64.9 3.5 29 99-127 12-40 (236)
235 2zej_A Dardarin, leucine-rich 97.3 0.00011 3.9E-09 61.9 3.2 24 105-128 4-27 (184)
236 2wji_A Ferrous iron transport 97.3 0.00012 4.1E-09 60.6 3.2 23 105-127 5-27 (165)
237 1gtv_A TMK, thymidylate kinase 97.3 6.5E-05 2.2E-09 64.7 1.3 24 105-128 2-25 (214)
238 3r20_A Cytidylate kinase; stru 97.3 0.0001 3.5E-09 66.0 2.5 24 104-127 10-33 (233)
239 1kht_A Adenylate kinase; phosp 97.2 0.00017 5.7E-09 60.8 3.5 26 103-128 3-28 (192)
240 3lw7_A Adenylate kinase relate 97.2 0.00016 5.4E-09 59.5 3.1 19 105-123 3-21 (179)
241 2rhm_A Putative kinase; P-loop 97.2 0.00016 5.5E-09 61.1 3.0 28 101-128 3-30 (193)
242 3trf_A Shikimate kinase, SK; a 97.2 0.0002 6.7E-09 60.4 3.5 27 102-128 4-30 (185)
243 2jaq_A Deoxyguanosine kinase; 97.2 0.00018 6.3E-09 61.1 3.2 24 105-128 2-25 (205)
244 3iij_A Coilin-interacting nucl 97.2 0.00014 4.9E-09 61.2 2.4 27 101-127 9-35 (180)
245 1vht_A Dephospho-COA kinase; s 97.1 0.00021 7.3E-09 62.1 3.4 24 102-125 3-26 (218)
246 3auy_A DNA double-strand break 97.1 0.00023 7.8E-09 67.6 3.8 32 93-125 16-47 (371)
247 3cf0_A Transitional endoplasmi 97.1 0.00023 7.7E-09 65.5 3.7 41 97-144 43-83 (301)
248 1via_A Shikimate kinase; struc 97.1 0.0002 6.7E-09 60.1 2.7 24 105-128 6-29 (175)
249 2v54_A DTMP kinase, thymidylat 97.1 0.00029 1E-08 60.1 3.8 26 102-127 3-28 (204)
250 1uf9_A TT1252 protein; P-loop, 97.1 0.00026 8.7E-09 60.3 3.1 23 104-126 9-31 (203)
251 2c95_A Adenylate kinase 1; tra 97.1 0.00029 1E-08 59.6 3.4 28 101-128 7-34 (196)
252 1oxx_K GLCV, glucose, ABC tran 97.1 0.00022 7.6E-09 67.6 2.9 121 145-283 81-234 (353)
253 2ze6_A Isopentenyl transferase 97.1 0.00027 9.3E-09 63.5 3.3 24 105-128 3-26 (253)
254 2it1_A 362AA long hypothetical 97.1 0.00016 5.4E-09 68.9 1.8 120 146-283 75-227 (362)
255 1ex7_A Guanylate kinase; subst 97.0 0.00027 9.3E-09 61.0 3.0 22 106-127 4-25 (186)
256 1ly1_A Polynucleotide kinase; 97.0 0.00031 1E-08 58.5 3.3 22 104-125 3-24 (181)
257 2wwf_A Thymidilate kinase, put 97.0 0.00033 1.1E-08 60.1 3.5 28 101-128 8-35 (212)
258 4ag6_A VIRB4 ATPase, type IV s 97.0 0.00034 1.2E-08 66.6 3.9 38 102-144 34-71 (392)
259 1gvn_B Zeta; postsegregational 97.0 0.00034 1.2E-08 64.2 3.7 35 102-143 32-66 (287)
260 1g29_1 MALK, maltose transport 97.0 0.00015 5E-09 69.4 1.0 120 146-283 81-233 (372)
261 2plr_A DTMP kinase, probable t 97.0 0.00034 1.2E-08 59.8 3.3 27 102-128 3-29 (213)
262 1nn5_A Similar to deoxythymidy 97.0 0.00037 1.3E-08 59.8 3.4 29 100-128 6-34 (215)
263 3lxx_A GTPase IMAP family memb 97.0 0.00042 1.4E-08 61.1 3.8 24 105-128 31-54 (239)
264 1z47_A CYSA, putative ABC-tran 97.0 0.00021 7.2E-09 67.9 1.9 120 146-283 87-239 (355)
265 3ihw_A Centg3; RAS, centaurin, 97.0 0.00097 3.3E-08 56.2 5.7 40 105-144 22-65 (184)
266 3ake_A Cytidylate kinase; CMP 97.0 0.00037 1.3E-08 59.5 3.1 24 105-128 4-27 (208)
267 2bwj_A Adenylate kinase 5; pho 97.0 0.00017 5.7E-09 61.3 0.8 30 99-128 8-37 (199)
268 1nks_A Adenylate kinase; therm 96.9 0.0004 1.4E-08 58.4 3.0 24 105-128 3-26 (194)
269 1tev_A UMP-CMP kinase; ploop, 96.9 0.00043 1.5E-08 58.2 3.2 26 103-128 3-28 (196)
270 2yyz_A Sugar ABC transporter, 96.9 0.00015 5.3E-09 68.9 0.2 120 146-283 75-227 (359)
271 1ko7_A HPR kinase/phosphatase; 96.9 0.00089 3E-08 62.5 5.3 32 93-125 135-166 (314)
272 2vli_A Antibiotic resistance p 96.9 0.00037 1.3E-08 58.4 2.4 27 102-128 4-30 (183)
273 1v43_A Sugar-binding transport 96.9 0.00019 6.6E-09 68.6 0.6 120 146-283 83-235 (372)
274 1xjc_A MOBB protein homolog; s 96.9 0.00057 2E-08 58.2 3.4 25 104-128 5-29 (169)
275 2z0h_A DTMP kinase, thymidylat 96.8 0.00056 1.9E-08 57.9 3.2 24 105-128 2-25 (197)
276 2q6t_A DNAB replication FORK h 96.8 0.0036 1.2E-07 60.8 9.2 36 93-128 190-225 (444)
277 4fcw_A Chaperone protein CLPB; 96.8 0.00063 2.2E-08 61.9 3.6 31 104-139 48-78 (311)
278 1aky_A Adenylate kinase; ATP:A 96.8 0.00071 2.4E-08 58.8 3.7 27 102-128 3-29 (220)
279 1jal_A YCHF protein; nucleotid 96.8 0.00093 3.2E-08 63.6 4.7 42 103-144 2-49 (363)
280 1zuh_A Shikimate kinase; alpha 96.8 0.00074 2.5E-08 56.0 3.4 25 104-128 8-32 (168)
281 2ce7_A Cell division protein F 96.8 0.00037 1.3E-08 68.7 1.7 34 93-128 41-74 (476)
282 3k53_A Ferrous iron transport 96.8 0.00063 2.2E-08 61.4 3.1 24 105-128 5-28 (271)
283 1zd8_A GTP:AMP phosphotransfer 96.8 0.00071 2.4E-08 59.2 3.3 28 101-128 5-32 (227)
284 2iyv_A Shikimate kinase, SK; t 96.7 0.00065 2.2E-08 57.1 2.9 25 104-128 3-27 (184)
285 1e6c_A Shikimate kinase; phosp 96.7 0.00066 2.3E-08 56.2 2.8 25 104-128 3-27 (173)
286 3fb4_A Adenylate kinase; psych 96.7 0.00073 2.5E-08 58.3 3.2 24 105-128 2-25 (216)
287 1z2a_A RAS-related protein RAB 96.7 0.0012 4.2E-08 53.6 4.3 24 105-128 7-30 (168)
288 2cdn_A Adenylate kinase; phosp 96.7 0.00092 3.1E-08 57.2 3.7 26 103-128 20-45 (201)
289 1fzq_A ADP-ribosylation factor 96.7 0.00097 3.3E-08 55.9 3.7 22 105-126 18-39 (181)
290 2pbr_A DTMP kinase, thymidylat 96.7 0.00081 2.8E-08 56.6 3.2 24 105-128 2-25 (195)
291 1zak_A Adenylate kinase; ATP:A 96.7 0.00074 2.5E-08 58.8 2.9 27 102-128 4-30 (222)
292 2pt5_A Shikimate kinase, SK; a 96.7 0.00087 3E-08 55.3 3.3 24 105-128 2-25 (168)
293 3llm_A ATP-dependent RNA helic 96.7 0.00064 2.2E-08 59.9 2.5 28 99-126 72-99 (235)
294 1z0j_A RAB-22, RAS-related pro 96.7 0.0014 4.9E-08 53.2 4.3 24 105-128 8-31 (170)
295 3dl0_A Adenylate kinase; phosp 96.7 0.00089 3.1E-08 57.9 3.2 24 105-128 2-25 (216)
296 1qf9_A UMP/CMP kinase, protein 96.7 0.00085 2.9E-08 56.3 3.0 26 103-128 6-31 (194)
297 2ged_A SR-beta, signal recogni 96.7 0.00096 3.3E-08 56.0 3.3 24 105-128 50-73 (193)
298 1ukz_A Uridylate kinase; trans 96.7 0.00094 3.2E-08 57.1 3.3 26 103-128 15-40 (203)
299 1ek0_A Protein (GTP-binding pr 96.7 0.0015 5E-08 53.1 4.3 24 105-128 5-28 (170)
300 1c1y_A RAS-related protein RAP 96.7 0.0017 5.8E-08 52.6 4.7 23 105-127 5-27 (167)
301 1u8z_A RAS-related protein RAL 96.6 0.0018 6.1E-08 52.3 4.8 23 105-127 6-28 (168)
302 1uj2_A Uridine-cytidine kinase 96.6 0.00096 3.3E-08 59.5 3.2 25 104-128 23-47 (252)
303 1z08_A RAS-related protein RAB 96.6 0.0017 5.7E-08 52.9 4.4 23 105-127 8-30 (170)
304 1kao_A RAP2A; GTP-binding prot 96.6 0.0022 7.7E-08 51.7 5.1 23 105-127 5-27 (167)
305 2grj_A Dephospho-COA kinase; T 96.6 0.0011 3.7E-08 57.4 3.2 24 104-127 13-36 (192)
306 1ky3_A GTP-binding protein YPT 96.6 0.0015 5.2E-08 53.7 4.0 23 105-127 10-32 (182)
307 2erx_A GTP-binding protein DI- 96.6 0.0024 8.2E-08 51.9 5.2 22 105-126 5-26 (172)
308 2ce2_X GTPase HRAS; signaling 96.6 0.0011 3.7E-08 53.4 3.0 23 105-127 5-27 (166)
309 2dyk_A GTP-binding protein; GT 96.6 0.0012 4.1E-08 53.3 3.3 23 105-127 3-25 (161)
310 3bos_A Putative DNA replicatio 96.6 0.0014 4.6E-08 56.7 3.8 27 102-128 51-77 (242)
311 2nzj_A GTP-binding protein REM 96.6 0.0012 4.1E-08 54.1 3.2 23 105-127 6-28 (175)
312 3q72_A GTP-binding protein RAD 96.6 0.00099 3.4E-08 54.2 2.7 24 105-128 4-27 (166)
313 2ew1_A RAS-related protein RAB 96.6 0.0027 9.1E-08 54.5 5.6 23 105-127 28-50 (201)
314 1a7j_A Phosphoribulokinase; tr 96.6 0.00059 2E-08 62.8 1.4 27 102-128 4-30 (290)
315 2w58_A DNAI, primosome compone 96.5 0.0017 6E-08 55.3 4.3 25 104-128 55-79 (202)
316 2lkc_A Translation initiation 96.5 0.0016 5.4E-08 53.6 3.8 26 102-127 7-32 (178)
317 3a4m_A L-seryl-tRNA(SEC) kinas 96.5 0.0012 4.2E-08 59.3 3.3 26 102-127 3-28 (260)
318 1wms_A RAB-9, RAB9, RAS-relate 96.5 0.0017 5.7E-08 53.4 3.9 23 105-127 9-31 (177)
319 2qby_A CDC6 homolog 1, cell di 96.5 0.0012 4.1E-08 61.2 3.3 28 101-128 43-70 (386)
320 3q85_A GTP-binding protein REM 96.5 0.0014 4.7E-08 53.5 3.2 24 105-128 4-27 (169)
321 3tlx_A Adenylate kinase 2; str 96.5 0.0013 4.6E-08 58.5 3.3 27 102-128 28-54 (243)
322 1g16_A RAS-related protein SEC 96.5 0.0012 4.1E-08 53.7 2.8 23 105-127 5-27 (170)
323 3b1v_A Ferrous iron uptake tra 96.5 0.0013 4.4E-08 59.9 3.2 23 105-127 5-27 (272)
324 3b9p_A CG5977-PA, isoform A; A 96.5 0.0015 5.1E-08 59.2 3.7 27 102-128 53-79 (297)
325 3lxw_A GTPase IMAP family memb 96.5 0.0013 4.6E-08 58.6 3.3 24 105-128 23-46 (247)
326 1v5w_A DMC1, meiotic recombina 96.5 0.0021 7.1E-08 60.4 4.7 28 99-126 118-145 (343)
327 3bc1_A RAS-related protein RAB 96.5 0.0022 7.5E-08 53.2 4.3 23 105-127 13-35 (195)
328 3tw8_B RAS-related protein RAB 96.5 0.0014 4.6E-08 54.0 3.0 23 105-127 11-33 (181)
329 3clv_A RAB5 protein, putative; 96.5 0.0023 7.7E-08 53.4 4.4 24 105-128 9-32 (208)
330 2fn4_A P23, RAS-related protei 96.5 0.0014 4.9E-08 53.8 3.1 23 105-127 11-33 (181)
331 3pqc_A Probable GTP-binding pr 96.5 0.0013 4.5E-08 54.9 2.8 23 105-127 25-47 (195)
332 1svi_A GTP-binding protein YSX 96.5 0.0013 4.5E-08 55.2 2.8 24 104-127 24-47 (195)
333 2z43_A DNA repair and recombin 96.5 0.0025 8.6E-08 59.2 5.0 29 99-127 103-131 (324)
334 4dsu_A GTPase KRAS, isoform 2B 96.4 0.0028 9.5E-08 52.5 4.8 23 105-127 6-28 (189)
335 2f6r_A COA synthase, bifunctio 96.4 0.0014 4.7E-08 59.8 3.0 22 104-125 76-97 (281)
336 1r2q_A RAS-related protein RAB 96.4 0.0017 5.9E-08 52.6 3.2 22 105-126 8-29 (170)
337 3t1o_A Gliding protein MGLA; G 96.4 0.0018 6.2E-08 54.0 3.3 24 105-128 16-39 (198)
338 2bcg_Y Protein YP2, GTP-bindin 96.4 0.0041 1.4E-07 52.8 5.6 23 105-127 10-32 (206)
339 3d31_A Sulfate/molybdate ABC t 96.4 0.001 3.6E-08 62.9 1.9 117 146-283 72-221 (348)
340 2a9k_A RAS-related protein RAL 96.4 0.0035 1.2E-07 51.7 5.0 23 105-127 20-42 (187)
341 2bov_A RAla, RAS-related prote 96.4 0.0031 1.1E-07 53.2 4.7 23 105-127 16-38 (206)
342 1upt_A ARL1, ADP-ribosylation 96.4 0.0019 6.5E-08 52.7 3.2 22 105-126 9-30 (171)
343 2xb4_A Adenylate kinase; ATP-b 96.4 0.0018 6.1E-08 56.7 3.3 24 105-128 2-25 (223)
344 3be4_A Adenylate kinase; malar 96.4 0.0018 6.1E-08 56.3 3.2 27 102-128 4-30 (217)
345 2oil_A CATX-8, RAS-related pro 96.4 0.0019 6.3E-08 54.3 3.2 23 105-127 27-49 (193)
346 2y8e_A RAB-protein 6, GH09086P 96.4 0.0026 9E-08 52.1 4.1 23 105-127 16-38 (179)
347 2cxx_A Probable GTP-binding pr 96.4 0.0016 5.4E-08 54.2 2.8 23 105-127 3-25 (190)
348 3cbq_A GTP-binding protein REM 96.4 0.0018 6.3E-08 55.1 3.2 23 105-127 25-47 (195)
349 1jbk_A CLPB protein; beta barr 96.4 0.0022 7.5E-08 52.9 3.6 27 102-128 42-68 (195)
350 2hxs_A RAB-26, RAS-related pro 96.3 0.0021 7.1E-08 52.9 3.4 23 105-127 8-30 (178)
351 1m7b_A RND3/RHOE small GTP-bin 96.3 0.0034 1.2E-07 52.4 4.7 33 105-137 9-41 (184)
352 3t5d_A Septin-7; GTP-binding p 96.3 0.0016 5.4E-08 58.9 2.8 23 105-127 10-32 (274)
353 1r8s_A ADP-ribosylation factor 96.3 0.002 7E-08 52.2 3.2 22 105-126 2-23 (164)
354 2g6b_A RAS-related protein RAB 96.3 0.0021 7.1E-08 53.0 3.2 23 105-127 12-34 (180)
355 2h92_A Cytidylate kinase; ross 96.3 0.0019 6.6E-08 55.7 3.1 25 103-127 3-27 (219)
356 3kkq_A RAS-related protein M-R 96.3 0.0041 1.4E-07 51.5 5.0 23 105-127 20-42 (183)
357 1moz_A ARL1, ADP-ribosylation 96.3 0.0013 4.5E-08 54.5 1.9 23 103-125 18-40 (183)
358 1z0f_A RAB14, member RAS oncog 96.3 0.0022 7.4E-08 52.6 3.2 23 105-127 17-39 (179)
359 3con_A GTPase NRAS; structural 96.3 0.0022 7.4E-08 53.7 3.2 23 105-127 23-45 (190)
360 1e4v_A Adenylate kinase; trans 96.3 0.0019 6.6E-08 55.8 3.0 24 105-128 2-25 (214)
361 1wf3_A GTP-binding protein; GT 96.3 0.0021 7.1E-08 59.3 3.3 22 105-126 9-30 (301)
362 2efe_B Small GTP-binding prote 96.3 0.0023 8E-08 52.7 3.3 24 105-128 14-37 (181)
363 3tkl_A RAS-related protein RAB 96.3 0.0038 1.3E-07 52.2 4.6 24 105-128 18-41 (196)
364 3iby_A Ferrous iron transport 96.2 0.002 7E-08 57.9 3.1 23 105-127 3-25 (256)
365 1sky_E F1-ATPase, F1-ATP synth 96.2 0.0017 5.9E-08 63.8 2.7 35 93-128 142-176 (473)
366 1ksh_A ARF-like protein 2; sma 96.2 0.0034 1.2E-07 52.2 4.2 34 103-137 18-51 (186)
367 1ltq_A Polynucleotide kinase; 96.2 0.0022 7.5E-08 58.3 3.3 22 104-125 3-24 (301)
368 2gf0_A GTP-binding protein DI- 96.2 0.004 1.4E-07 52.2 4.6 23 105-127 10-32 (199)
369 2bme_A RAB4A, RAS-related prot 96.2 0.0031 1.1E-07 52.3 3.9 24 105-128 12-35 (186)
370 3d3q_A TRNA delta(2)-isopenten 96.2 0.0022 7.5E-08 60.5 3.2 25 104-128 8-32 (340)
371 3t5g_A GTP-binding protein RHE 96.2 0.0043 1.5E-07 51.2 4.8 22 105-126 8-29 (181)
372 3h4m_A Proteasome-activating n 96.2 0.0026 8.8E-08 57.2 3.6 29 100-128 48-76 (285)
373 4dhe_A Probable GTP-binding pr 96.2 0.0014 4.9E-08 56.3 1.8 24 104-127 30-53 (223)
374 1l8q_A Chromosomal replication 96.2 0.0022 7.6E-08 59.0 3.2 26 103-128 37-62 (324)
375 1ak2_A Adenylate kinase isoenz 96.2 0.0028 9.5E-08 55.7 3.7 27 102-128 15-41 (233)
376 2fg5_A RAB-22B, RAS-related pr 96.2 0.0037 1.3E-07 52.6 4.4 23 105-127 25-47 (192)
377 3iev_A GTP-binding protein ERA 96.2 0.0023 7.9E-08 59.1 3.3 23 105-127 12-34 (308)
378 2dby_A GTP-binding protein; GD 96.2 0.0021 7.2E-08 61.2 3.0 23 105-127 3-25 (368)
379 1nrj_B SR-beta, signal recogni 96.2 0.0025 8.4E-08 54.7 3.2 23 105-127 14-36 (218)
380 2gf9_A RAS-related protein RAB 96.2 0.0038 1.3E-07 52.2 4.3 23 105-127 24-46 (189)
381 1vg8_A RAS-related protein RAB 96.2 0.0042 1.4E-07 52.5 4.6 23 105-127 10-32 (207)
382 3reg_A RHO-like small GTPase; 96.2 0.0049 1.7E-07 51.8 4.9 33 105-137 25-57 (194)
383 1mh1_A RAC1; GTP-binding, GTPa 96.2 0.0045 1.5E-07 51.1 4.6 22 105-126 7-28 (186)
384 2e87_A Hypothetical protein PH 96.2 0.0024 8.2E-08 60.1 3.3 26 102-127 166-191 (357)
385 3a8t_A Adenylate isopentenyltr 96.2 0.0026 8.9E-08 59.9 3.4 27 102-128 39-65 (339)
386 2xtp_A GTPase IMAP family memb 96.2 0.0024 8.2E-08 56.8 3.1 23 105-127 24-46 (260)
387 3oes_A GTPase rhebl1; small GT 96.2 0.0045 1.5E-07 52.5 4.7 33 105-137 26-58 (201)
388 3zvl_A Bifunctional polynucleo 96.2 0.0027 9.2E-08 61.2 3.5 30 98-127 253-282 (416)
389 2wsm_A Hydrogenase expression/ 96.1 0.0026 8.8E-08 54.8 3.0 25 104-128 31-55 (221)
390 1ypw_A Transitional endoplasmi 96.1 0.0011 3.6E-08 69.5 0.6 33 96-128 504-536 (806)
391 4edh_A DTMP kinase, thymidylat 96.1 0.0028 9.7E-08 55.6 3.3 28 101-128 4-31 (213)
392 1x3s_A RAS-related protein RAB 96.1 0.0043 1.5E-07 51.7 4.3 23 105-127 17-39 (195)
393 1z06_A RAS-related protein RAB 96.1 0.003 1E-07 52.9 3.3 23 105-127 22-44 (189)
394 3v9p_A DTMP kinase, thymidylat 96.1 0.0024 8E-08 56.8 2.7 29 100-128 22-50 (227)
395 2p65_A Hypothetical protein PF 96.1 0.0027 9.4E-08 52.4 2.9 27 102-128 42-68 (187)
396 2qmh_A HPR kinase/phosphorylas 96.1 0.0035 1.2E-07 54.9 3.6 34 93-127 25-58 (205)
397 2cjw_A GTP-binding protein GEM 96.1 0.0031 1E-07 53.5 3.2 22 105-126 8-29 (192)
398 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.0034 1.2E-07 55.4 3.7 26 103-128 39-64 (262)
399 3i8s_A Ferrous iron transport 96.1 0.0028 9.5E-08 57.5 3.1 23 105-127 5-27 (274)
400 1gwn_A RHO-related GTP-binding 96.1 0.0052 1.8E-07 52.8 4.7 33 105-137 30-62 (205)
401 3bwd_D RAC-like GTP-binding pr 96.1 0.0038 1.3E-07 51.4 3.7 24 104-127 9-32 (182)
402 1zd9_A ADP-ribosylation factor 96.1 0.0048 1.6E-07 51.8 4.3 23 105-127 24-46 (188)
403 3a1s_A Iron(II) transport prot 96.1 0.0031 1.1E-07 56.7 3.3 23 105-127 7-29 (258)
404 1zbd_A Rabphilin-3A; G protein 96.1 0.0032 1.1E-07 53.2 3.3 23 105-127 10-32 (203)
405 2a5j_A RAS-related protein RAB 96.1 0.0033 1.1E-07 52.8 3.2 23 105-127 23-45 (191)
406 4bas_A ADP-ribosylation factor 96.1 0.0031 1E-07 52.9 3.0 33 105-137 19-52 (199)
407 2il1_A RAB12; G-protein, GDP, 96.0 0.0027 9.4E-08 53.5 2.7 23 105-127 28-50 (192)
408 2qu8_A Putative nucleolar GTP- 96.0 0.0032 1.1E-07 54.8 3.2 23 105-127 31-53 (228)
409 2atv_A RERG, RAS-like estrogen 96.0 0.006 2E-07 51.4 4.8 23 105-127 30-52 (196)
410 1b0u_A Histidine permease; ABC 96.0 0.0019 6.4E-08 58.5 1.7 124 147-290 94-251 (262)
411 3dz8_A RAS-related protein RAB 96.0 0.0031 1.1E-07 53.0 3.0 23 105-127 25-47 (191)
412 2h57_A ADP-ribosylation factor 96.0 0.0026 8.8E-08 53.3 2.5 23 105-127 23-45 (190)
413 1njg_A DNA polymerase III subu 96.0 0.0025 8.6E-08 54.4 2.4 36 93-128 32-70 (250)
414 3lv8_A DTMP kinase, thymidylat 96.0 0.0032 1.1E-07 56.3 3.1 28 101-128 25-52 (236)
415 2r62_A Cell division protease 96.0 0.0011 3.6E-08 59.3 -0.0 23 106-128 47-69 (268)
416 3crm_A TRNA delta(2)-isopenten 96.0 0.0033 1.1E-07 58.9 3.3 25 104-128 6-30 (323)
417 1zj6_A ADP-ribosylation factor 96.0 0.0034 1.2E-07 52.5 3.1 23 104-126 17-39 (187)
418 3c5c_A RAS-like protein 12; GD 96.0 0.007 2.4E-07 50.8 5.0 23 105-127 23-45 (187)
419 3exa_A TRNA delta(2)-isopenten 96.0 0.0034 1.2E-07 58.6 3.3 26 103-128 3-28 (322)
420 3cph_A RAS-related protein SEC 96.0 0.0037 1.3E-07 53.1 3.2 23 105-127 22-44 (213)
421 2o52_A RAS-related protein RAB 96.0 0.0031 1.1E-07 53.6 2.7 23 105-127 27-49 (200)
422 3umf_A Adenylate kinase; rossm 96.0 0.0032 1.1E-07 55.6 2.8 33 96-128 22-54 (217)
423 2iwr_A Centaurin gamma 1; ANK 96.0 0.003 1E-07 52.0 2.6 22 105-126 9-30 (178)
424 2p5s_A RAS and EF-hand domain 96.0 0.0038 1.3E-07 52.9 3.2 24 104-127 29-52 (199)
425 1jwy_B Dynamin A GTPase domain 96.0 0.0034 1.2E-07 57.3 3.1 23 105-127 26-48 (315)
426 4tmk_A Protein (thymidylate ki 95.9 0.0041 1.4E-07 54.6 3.4 27 102-128 2-28 (213)
427 2h17_A ADP-ribosylation factor 95.9 0.0032 1.1E-07 52.4 2.6 22 105-126 23-44 (181)
428 2fv8_A H6, RHO-related GTP-bin 95.9 0.0038 1.3E-07 53.3 3.1 23 105-127 27-49 (207)
429 2ocp_A DGK, deoxyguanosine kin 95.9 0.0038 1.3E-07 55.0 3.1 26 103-128 2-27 (241)
430 2fh5_B SR-beta, signal recogni 95.9 0.0042 1.4E-07 53.1 3.2 23 105-127 9-31 (214)
431 2gco_A H9, RHO-related GTP-bin 95.9 0.0059 2E-07 51.8 4.1 23 105-127 27-49 (201)
432 2f7s_A C25KG, RAS-related prot 95.9 0.0043 1.5E-07 53.1 3.2 23 105-127 27-49 (217)
433 3tmk_A Thymidylate kinase; pho 95.9 0.0046 1.6E-07 54.5 3.4 28 101-128 3-30 (216)
434 3n70_A Transport activator; si 95.9 0.0048 1.7E-07 50.1 3.3 28 101-128 22-49 (145)
435 3ld9_A DTMP kinase, thymidylat 95.8 0.0046 1.6E-07 54.8 3.3 28 101-128 19-46 (223)
436 1h65_A Chloroplast outer envel 95.8 0.0042 1.4E-07 55.9 3.1 23 105-127 41-63 (270)
437 2q3h_A RAS homolog gene family 95.8 0.0046 1.6E-07 52.2 3.2 24 104-127 21-44 (201)
438 3llu_A RAS-related GTP-binding 95.8 0.0043 1.5E-07 52.5 3.0 24 105-128 22-45 (196)
439 2j1l_A RHO-related GTP-binding 95.8 0.0044 1.5E-07 53.4 3.0 22 105-126 36-57 (214)
440 3def_A T7I23.11 protein; chlor 95.8 0.0044 1.5E-07 55.6 3.1 23 105-127 38-60 (262)
441 2atx_A Small GTP binding prote 95.8 0.0069 2.3E-07 50.8 4.2 23 105-127 20-42 (194)
442 3tqf_A HPR(Ser) kinase; transf 95.8 0.0061 2.1E-07 52.2 3.8 32 93-125 7-38 (181)
443 1p5z_B DCK, deoxycytidine kina 95.8 0.0032 1.1E-07 56.4 2.2 29 100-128 21-49 (263)
444 2v3c_C SRP54, signal recogniti 95.8 0.0022 7.6E-08 62.3 1.2 31 98-128 92-124 (432)
445 2fu5_C RAS-related protein RAB 95.8 0.003 1E-07 52.3 1.8 23 105-127 10-32 (183)
446 2aka_B Dynamin-1; fusion prote 95.8 0.0041 1.4E-07 56.1 2.8 23 105-127 28-50 (299)
447 2hf9_A Probable hydrogenase ni 95.8 0.0046 1.6E-07 53.3 3.0 23 105-127 40-62 (226)
448 3cnl_A YLQF, putative uncharac 95.8 0.0049 1.7E-07 55.8 3.2 25 104-128 100-124 (262)
449 4dcu_A GTP-binding protein ENG 95.7 0.0042 1.4E-07 60.4 2.8 24 104-127 24-47 (456)
450 2b6h_A ADP-ribosylation factor 95.7 0.0046 1.6E-07 52.3 2.7 22 104-125 30-51 (192)
451 1u94_A RECA protein, recombina 95.7 0.0065 2.2E-07 57.5 4.0 35 93-128 51-88 (356)
452 1sxj_D Activator 1 41 kDa subu 95.7 0.0024 8.2E-08 58.9 1.0 36 93-128 46-83 (353)
453 2i1q_A DNA repair and recombin 95.7 0.0053 1.8E-07 56.7 3.2 27 99-125 94-120 (322)
454 2zts_A Putative uncharacterize 95.7 0.0071 2.4E-07 52.7 3.8 25 99-123 26-50 (251)
455 3foz_A TRNA delta(2)-isopenten 95.7 0.0058 2E-07 57.0 3.3 26 103-128 10-35 (316)
456 4djt_A GTP-binding nuclear pro 95.7 0.0028 9.7E-08 54.3 1.1 23 105-127 13-35 (218)
457 4gzl_A RAS-related C3 botulinu 95.6 0.0099 3.4E-07 50.7 4.6 22 105-126 32-53 (204)
458 2g3y_A GTP-binding protein GEM 95.6 0.0063 2.1E-07 53.0 3.2 22 105-126 39-60 (211)
459 3syl_A Protein CBBX; photosynt 95.6 0.0064 2.2E-07 55.1 3.4 27 102-128 66-92 (309)
460 2j0v_A RAC-like GTP-binding pr 95.6 0.0085 2.9E-07 51.0 3.9 23 105-127 11-33 (212)
461 2olj_A Amino acid ABC transpor 95.6 0.0054 1.8E-07 55.6 2.7 119 147-283 101-252 (263)
462 2hup_A RAS-related protein RAB 95.5 0.0066 2.3E-07 51.7 3.1 23 105-127 31-53 (201)
463 2x77_A ADP-ribosylation factor 95.5 0.0044 1.5E-07 51.7 1.9 22 104-125 23-44 (189)
464 3cpj_B GTP-binding protein YPT 95.5 0.0066 2.3E-07 52.5 3.1 23 105-127 15-37 (223)
465 3q3j_B RHO-related GTP-binding 95.5 0.013 4.5E-07 50.4 4.9 23 105-127 29-51 (214)
466 2z4s_A Chromosomal replication 95.5 0.0058 2E-07 59.3 2.9 26 103-128 130-155 (440)
467 2yc2_C IFT27, small RAB-relate 95.5 0.0031 1E-07 53.2 0.8 22 105-126 22-43 (208)
468 3sr0_A Adenylate kinase; phosp 95.5 0.0074 2.5E-07 52.6 3.2 24 105-128 2-25 (206)
469 3hws_A ATP-dependent CLP prote 95.4 0.0073 2.5E-07 56.6 3.3 26 103-128 51-76 (363)
470 3dm5_A SRP54, signal recogniti 95.4 0.0092 3.1E-07 58.2 3.8 27 102-128 99-125 (443)
471 2chg_A Replication factor C sm 95.4 0.008 2.7E-07 50.7 3.0 24 105-128 40-63 (226)
472 3eph_A TRNA isopentenyltransfe 95.4 0.0075 2.6E-07 58.1 3.1 25 104-128 3-27 (409)
473 1xwi_A SKD1 protein; VPS4B, AA 95.4 0.0092 3.1E-07 55.3 3.6 26 102-127 44-69 (322)
474 3uk6_A RUVB-like 2; hexameric 95.3 0.013 4.3E-07 54.5 4.5 28 101-128 68-95 (368)
475 2v1u_A Cell division control p 95.3 0.0076 2.6E-07 55.9 2.8 28 101-128 42-69 (387)
476 2orw_A Thymidine kinase; TMTK, 95.2 0.014 4.7E-07 49.8 4.0 27 102-128 2-29 (184)
477 1ofh_A ATP-dependent HSL prote 95.2 0.0098 3.4E-07 53.6 3.2 25 104-128 51-75 (310)
478 1g8f_A Sulfate adenylyltransfe 95.1 0.0091 3.1E-07 59.3 3.0 28 101-128 393-420 (511)
479 3p32_A Probable GTPase RV1496/ 95.1 0.013 4.6E-07 55.0 3.9 26 103-128 79-104 (355)
480 3eie_A Vacuolar protein sortin 95.1 0.013 4.4E-07 54.1 3.6 27 102-128 50-76 (322)
481 1d2n_A N-ethylmaleimide-sensit 95.1 0.0095 3.3E-07 53.3 2.7 25 104-128 65-89 (272)
482 3t15_A Ribulose bisphosphate c 95.1 0.012 4.2E-07 53.7 3.4 25 104-128 37-61 (293)
483 3pvs_A Replication-associated 95.0 0.0083 2.8E-07 58.5 2.2 35 94-128 39-75 (447)
484 1puj_A YLQF, conserved hypothe 95.0 0.012 4E-07 53.8 3.1 25 104-128 121-145 (282)
485 3ec1_A YQEH GTPase; atnos1, at 95.0 0.012 4.1E-07 55.8 3.2 25 102-126 161-185 (369)
486 4hlc_A DTMP kinase, thymidylat 95.0 0.013 4.4E-07 51.0 3.1 26 103-128 2-27 (205)
487 3d8b_A Fidgetin-like protein 1 95.0 0.014 4.8E-07 54.7 3.7 28 101-128 115-142 (357)
488 3co5_A Putative two-component 95.0 0.0068 2.3E-07 49.2 1.2 26 102-127 26-51 (143)
489 3gj0_A GTP-binding nuclear pro 94.9 0.0091 3.1E-07 51.3 2.0 23 105-127 17-40 (221)
490 3gmt_A Adenylate kinase; ssgci 94.9 0.014 4.7E-07 52.0 3.3 25 104-128 9-33 (230)
491 2hjg_A GTP-binding protein ENG 94.9 0.011 3.8E-07 57.1 2.8 23 105-127 5-27 (436)
492 1lnz_A SPO0B-associated GTP-bi 94.9 0.015 5.2E-07 54.6 3.5 34 94-127 149-182 (342)
493 3th5_A RAS-related C3 botulinu 93.9 0.0047 1.6E-07 52.4 0.0 22 105-126 32-53 (204)
494 1m8p_A Sulfate adenylyltransfe 94.9 0.013 4.5E-07 58.9 3.3 27 102-128 395-421 (573)
495 1um8_A ATP-dependent CLP prote 94.8 0.014 4.8E-07 54.8 3.3 25 104-128 73-97 (376)
496 2x2e_A Dynamin-1; nitration, h 94.8 0.01 3.6E-07 55.6 2.1 23 105-127 33-55 (353)
497 3h2y_A GTPase family protein; 94.8 0.013 4.4E-07 55.6 2.8 26 102-127 159-184 (368)
498 3gd7_A Fusion complex of cysti 94.8 0.014 4.7E-07 56.0 3.0 71 217-290 156-251 (390)
499 1x6v_B Bifunctional 3'-phospho 94.7 0.015 5E-07 59.2 3.3 26 102-127 51-76 (630)
500 2qgz_A Helicase loader, putati 94.7 0.018 6E-07 53.2 3.6 26 103-128 152-177 (308)
No 1
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=4.2e-46 Score=350.48 Aligned_cols=226 Identities=18% Similarity=0.227 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHHHHHcccccccc--------CCCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCC
Q 021147 43 SLVDQRRRDAVFREVLQSYDQLRT--------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGS 114 (317)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGs 114 (317)
.++.+..+..|++++++.+++... ...+.|+++||+|+|++...+ |+||||+|++||++||||||||
T Consensus 17 ~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~v-----L~~isl~i~~Ge~vaivG~sGs 91 (306)
T 3nh6_A 17 RGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRET-----LQDVSFTVMPGQTLALVGPSGA 91 (306)
T ss_dssp --CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTTCEE-----EEEEEEEECTTCEEEEESSSCH
T ss_pred hHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCCCce-----eeeeeEEEcCCCEEEEECCCCc
Confidence 344556667778887765443221 123469999999999755444 9999999999999999999999
Q ss_pred hHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhcccccccc
Q 021147 115 GKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 194 (317)
Q Consensus 115 GKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~ 194 (317)
|||||+|+|+|+++ |++|+|+++|++ +..++...+++. ||||||++
T Consensus 92 GKSTLl~ll~gl~~-----p~~G~I~i~G~~----------------------i~~~~~~~~r~~-------i~~v~Q~~ 137 (306)
T 3nh6_A 92 GKSTILRLLFRFYD-----ISSGCIRIDGQD----------------------ISQVTQASLRSH-------IGVVPQDT 137 (306)
T ss_dssp HHHHHHHHHTTSSC-----CSEEEEEETTEE----------------------TTSBCHHHHHHT-------EEEECSSC
T ss_pred hHHHHHHHHHcCCC-----CCCcEEEECCEE----------------------cccCCHHHHhcc-------eEEEecCC
Confidence 99999999999999 999999999987 666777777776 99999999
Q ss_pred ccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccc
Q 021147 195 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 195 ~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~ 272 (317)
.+|+ .||++|+.++..... .+++.++++.+++. ...++.|+.+.+++.| .+||||||||++|||||+.+
T Consensus 138 ~lf~--~Tv~eNi~~~~~~~~-----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g--~~LSGGqrQRvaiARAL~~~ 208 (306)
T 3nh6_A 138 VLFN--DTIADNIRYGRVTAG-----NDEVEAAAQAAGIHDAIMAFPEGYRTQVGERG--LKLSGGEKQRVAIARTILKA 208 (306)
T ss_dssp CCCS--EEHHHHHHTTSTTCC-----HHHHHHHHHHHTCHHHHHHSTTGGGCEESTTS--BCCCHHHHHHHHHHHHHHHC
T ss_pred ccCc--ccHHHHHHhhcccCC-----HHHHHHHHHHhCcHHHHHhccchhhhHhcCCc--CCCCHHHHHHHHHHHHHHhC
Confidence 8885 499999998753222 23477788888873 3457789999999998 89999999999999999999
Q ss_pred cceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 273 PAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 273 p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
|+++||||||+ ||+.++..+++.|+++.+. ..|+++.+.. +|||
T Consensus 209 p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i 258 (306)
T 3nh6_A 209 PGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQI 258 (306)
T ss_dssp CSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEE
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEE
Confidence 99999999999 9999999999999987542 4566666665 6764
No 2
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=7e-44 Score=390.14 Aligned_cols=226 Identities=15% Similarity=0.181 Sum_probs=199.0
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc--------CCCCceEEEeEEEEcCCCC--ccccccCceeeee
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT--------RIGSLTDAKNKILSYTPGA--WIENVGGMTLSDY 98 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~I~~~nls~~y~~~~--~~~~~~~L~~isl 98 (317)
+...+.......|..+..+..+..|+.++++.+++... +..+.|+|+||+|+|+++. .+ |+||||
T Consensus 1026 ~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~V-----L~~isl 1100 (1321)
T 4f4c_A 1026 ISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEI-----LKGLSF 1100 (1321)
T ss_dssp TTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCS-----EEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCcc-----ccceeE
Confidence 45677888888999999999999999999987665433 1235799999999997542 33 999999
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHH
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRN 178 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~ 178 (317)
+|++||.+||||+||||||||+++|.|+|+ |++|+|++||.+ +++++.+.+|+
T Consensus 1101 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~iDG~d----------------------i~~i~~~~lR~ 1153 (1321)
T 4f4c_A 1101 SVEPGQTLALVGPSGCGKSTVVALLERFYD-----TLGGEIFIDGSE----------------------IKTLNPEHTRS 1153 (1321)
T ss_dssp EECTTCEEEEECSTTSSTTSHHHHHTTSSC-----CSSSEEEETTEE----------------------TTTBCHHHHHT
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCcc-----CCCCEEEECCEE----------------------hhhCCHHHHHh
Confidence 999999999999999999999999999999 999999999998 78899999998
Q ss_pred HHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCc
Q 021147 179 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLT 256 (317)
Q Consensus 179 ~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LS 256 (317)
+ |++|||+|.+|++ ||++||.++.... +...+++.++++.++++ +..+|+|+++.|+++| .+||
T Consensus 1154 ~-------i~~V~Qdp~LF~g--TIreNI~~gld~~---~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G--~~LS 1219 (1321)
T 4f4c_A 1154 Q-------IAIVSQEPTLFDC--SIAENIIYGLDPS---SVTMAQVEEAARLANIHNFIAELPEGFETRVGDRG--TQLS 1219 (1321)
T ss_dssp T-------EEEECSSCCCCSE--EHHHHHSSSSCTT---TSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTS--CSSC
T ss_pred h-------eEEECCCCEeeCc--cHHHHHhccCCCC---CCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCC--cccC
Confidence 8 9999999999976 9999999874221 12345699999999995 5678999999999999 8999
Q ss_pred HHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 257 DRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 257 gG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
||||||++|||||+++|+++||||||| ||++|++.+++.|+++.
T Consensus 1220 gGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~ 1264 (1321)
T 4f4c_A 1220 GGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR 1264 (1321)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999 99999999999998864
No 3
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.6e-43 Score=358.84 Aligned_cols=240 Identities=19% Similarity=0.210 Sum_probs=203.3
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc--------CCCCceEEEeEEEEcCCC-CccccccCceeeeeE
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT--------RIGSLTDAKNKILSYTPG-AWIENVGGMTLSDYD 99 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~ 99 (317)
.+..+.......|..+.++..+.+|+.++++.+++... ...+.|+++||+|+|++. ..+ |+|+||+
T Consensus 289 ~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~-----l~~isl~ 363 (578)
T 4a82_A 289 LLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPI-----LKDINLS 363 (578)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSSSCCS-----EEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCCCCcc-----eeeeEEE
Confidence 45677888888999999999999999999987654322 123469999999999753 334 9999999
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHH
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNR 179 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~ 179 (317)
|++||++||+||||||||||+|+|+|+++ |++|+|.++|++ ++.++...++++
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~-----p~~G~i~~~g~~----------------------~~~~~~~~~r~~ 416 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFYD-----VTSGQILIDGHN----------------------IKDFLTGSLRNQ 416 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSSC-----CSEEEEEETTEE----------------------GGGSCHHHHHHT
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCcEEEECCEE----------------------hhhCCHHHHhhh
Confidence 99999999999999999999999999999 999999999987 667787777776
Q ss_pred HHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcH
Q 021147 180 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTD 257 (317)
Q Consensus 180 ~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSg 257 (317)
|||+||++.+|+. ||+||+.++.+.. ..+++.++++.++++ ...+|+|+.+.++++| .+|||
T Consensus 417 -------i~~v~Q~~~l~~~--tv~eni~~~~~~~-----~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g--~~LSg 480 (578)
T 4a82_A 417 -------IGLVQQDNILFSD--TVKENILLGRPTA-----TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERG--VKLSG 480 (578)
T ss_dssp -------EEEECSSCCCCSS--BHHHHHGGGCSSC-----CHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGG--TTSCH
T ss_pred -------eEEEeCCCccCcc--cHHHHHhcCCCCC-----CHHHHHHHHHHhCcHHHHHhCcchhhhhhccCC--CcCCH
Confidence 9999999988865 9999999875322 124577888888874 4457889999999998 89999
Q ss_pred HHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 258 RARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 258 G~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
|||||+++|||++++|+++||||||+ ||+.++..+.+.++++.+. ..|+++.+.. +|||
T Consensus 481 Gq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i 545 (578)
T 4a82_A 481 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKI 545 (578)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEE
Confidence 99999999999999999999999999 9999999999999887542 5677777754 7764
No 4
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.9e-43 Score=386.72 Aligned_cols=239 Identities=16% Similarity=0.158 Sum_probs=205.9
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc---------CCCCceEEEeEEEEcCCC--CccccccCceeee
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT---------RIGSLTDAKNKILSYTPG--AWIENVGGMTLSD 97 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~I~~~nls~~y~~~--~~~~~~~~L~~is 97 (317)
.+..++......+..+.+++.+..|+.++++.++.... ...+.|+++||+|+|++. .++ |+|||
T Consensus 364 ~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~v-----L~~is 438 (1321)
T 4f4c_A 364 MGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPI-----LRGMN 438 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCS-----EEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCce-----eeceE
Confidence 44556777788889999999999999999987655432 123469999999999753 233 99999
Q ss_pred eEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHH
Q 021147 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLR 177 (317)
Q Consensus 98 l~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r 177 (317)
|+|++|+.+|||||||||||||+++|.|+|+ |++|+|.+||.+ +++++...+|
T Consensus 439 l~i~~G~~vaivG~sGsGKSTll~ll~~~~~-----~~~G~I~idG~~----------------------i~~~~~~~lr 491 (1321)
T 4f4c_A 439 LRVNAGQTVALVGSSGCGKSTIISLLLRYYD-----VLKGKITIDGVD----------------------VRDINLEFLR 491 (1321)
T ss_dssp EEECTTCEEEEEECSSSCHHHHHHHHTTSSC-----CSEEEEEETTEE----------------------TTTSCHHHHH
T ss_pred EeecCCcEEEEEecCCCcHHHHHHHhccccc-----cccCcccCCCcc----------------------chhccHHHHh
Confidence 9999999999999999999999999999999 999999999998 7889999999
Q ss_pred HHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcC
Q 021147 178 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSL 255 (317)
Q Consensus 178 ~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~L 255 (317)
++ ||||+|+|.+|+. ||+|||.++.+... .+++.++++.++++ +..+|+|+.|.|+++| ..|
T Consensus 492 ~~-------i~~v~Q~~~Lf~~--TI~eNI~~g~~~~~-----~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G--~~L 555 (1321)
T 4f4c_A 492 KN-------VAVVSQEPALFNC--TIEENISLGKEGIT-----REEMVAACKMANAEKFIKTLPNGYNTLVGDRG--TQL 555 (1321)
T ss_dssp HH-------EEEECSSCCCCSE--EHHHHHHTTCTTCC-----HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSS--CCC
T ss_pred hc-------ccccCCcceeeCC--chhHHHhhhcccch-----HHHHHHHHHHccchhHHHcCCCCCccEecCCC--CCC
Confidence 88 9999999999976 99999999865332 35689999999984 5678999999999999 899
Q ss_pred cHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCC
Q 021147 256 TDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNK 316 (317)
Q Consensus 256 SgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~ 316 (317)
|||||||++||||++++|+++||||||| ||+.++..+++.|.++.+. ..|+++.+.. +|+
T Consensus 556 SGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~-aD~ 621 (1321)
T 4f4c_A 556 SGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRN-ADL 621 (1321)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTT-CSE
T ss_pred CHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHh-CCE
Confidence 9999999999999999999999999999 9999999999999987643 4566665543 454
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.5e-43 Score=360.48 Aligned_cols=240 Identities=18% Similarity=0.191 Sum_probs=201.5
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc-------CCCCceEEEeEEEEcCCCCccccccCceeeeeEec
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT-------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVP 101 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~ 101 (317)
.+..+.......|..+.++..+.+|+.++++.+++... ...+.|+++||+|+|++...+ |+|+||+|+
T Consensus 305 ~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~-----l~~isl~i~ 379 (598)
T 3qf4_B 305 QFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKKPV-----LKDITFHIK 379 (598)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSSCCCCCSCCCCEEEEEEECCSSSSSCS-----CCSEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCCcc-----ccceEEEEc
Confidence 44566777888999999999999999999987654321 123469999999999765444 999999999
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHH
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMR 181 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~ 181 (317)
+||++||+||||||||||+|+|+|+++ |++|+|.++|++ +..++...++++
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~~-----p~~G~i~~~g~~----------------------i~~~~~~~~r~~-- 430 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFYD-----VDRGQILVDGID----------------------IRKIKRSSLRSS-- 430 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSSC-----CSEEEEEETTEE----------------------GGGSCHHHHHHH--
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcC-----CCCeEEEECCEE----------------------hhhCCHHHHHhc--
Confidence 999999999999999999999999999 999999999987 677888888877
Q ss_pred HhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHH
Q 021147 182 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRA 259 (317)
Q Consensus 182 ~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~ 259 (317)
|||+||++.+|+. ||+||+.++.+..... ++.++++.++++ ...+++|+.+.++++| .+|||||
T Consensus 431 -----i~~v~Q~~~lf~~--tv~eni~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g--~~LSgGq 496 (598)
T 3qf4_B 431 -----IGIVLQDTILFST--TVKENLKYGNPGATDE-----EIKEAAKLTHSDHFIKHLPEGYETVLTDNG--EDLSQGQ 496 (598)
T ss_dssp -----EEEECTTCCCCSS--BHHHHHHSSSTTCCTT-----HHHHHTTTTTCHHHHHTSTTGGGCBCHHHH--TTSCHHH
T ss_pred -----eEEEeCCCccccc--cHHHHHhcCCCCCCHH-----HHHHHHHHhCCHHHHHhccccccchhcCCC--CCCCHHH
Confidence 9999999988864 9999999875433222 366777777773 4457889999999988 8999999
Q ss_pred HHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 260 RIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 260 ~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
|||++||||++++|+++||||||+ ||+.++..+.+.++++.+. ..|+++.+.. +|||
T Consensus 497 ~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i 559 (598)
T 3qf4_B 497 RQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLI 559 (598)
T ss_dssp HHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEE
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEE
Confidence 999999999999999999999999 9999999999999987542 4667777655 7764
No 6
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=6.1e-43 Score=324.47 Aligned_cols=198 Identities=18% Similarity=0.218 Sum_probs=160.5
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||+|+|++...+ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 6 ~~l~i~~ls~~y~~~~~~-----L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~-----p~~G~I~~~G~~---- 71 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHA-----LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK-----PSSGRILFDNKP---- 71 (275)
T ss_dssp EEEEEEEEEEECTTSCEE-----EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEE----
T ss_pred cEEEEEEEEEEECCCCeE-----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCeEEEECCEE----
Confidence 479999999999765444 999999999999999999999999999999999999 999999999986
Q ss_pred eEecccCCCCcccccceeec--cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC-ChHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD-SDVEKQYNQI 226 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~-~~~~~~~~~~ 226 (317)
+. ..+...++ +.|||+||++....+.+||++|+.++...... .....+++.+
T Consensus 72 ------------------i~~~~~~~~~~~-------~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 126 (275)
T 3gfo_A 72 ------------------IDYSRKGIMKLR-------ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDN 126 (275)
T ss_dssp ------------------CCCSHHHHHHHH-------HSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred ------------------CCcccccHHHHh-------CcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 31 11122233 34999999874222257999999987543322 2344567788
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH-Hh--
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL-EH-- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~-~~-- 302 (317)
+++.+++... . +... .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++. +.
T Consensus 127 ~l~~~~L~~~--~-~~~~--------~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~ 195 (275)
T 3gfo_A 127 ALKRTGIEHL--K-DKPT--------HCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGI 195 (275)
T ss_dssp HHHHTTCGGG--T-TSBG--------GGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCchh--h-cCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCC
Confidence 8999998432 2 2333 7999999999999999999999999999999 99999999999999986 32
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|||
T Consensus 196 tvi~vtHdl~~~~~~~drv 214 (275)
T 3gfo_A 196 TIIIATHDIDIVPLYCDNV 214 (275)
T ss_dssp EEEEEESCCSSGGGGCSEE
T ss_pred EEEEEecCHHHHHHhCCEE
Confidence 678888888888875
No 7
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.5e-43 Score=357.04 Aligned_cols=238 Identities=18% Similarity=0.172 Sum_probs=197.8
Q ss_pred cCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc--------CCCCceEEEeEEEEcCCC-CccccccCceeeeeEec
Q 021147 31 SGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT--------RIGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVP 101 (317)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~ 101 (317)
..+.......|..+.+++.+.+|+.++++.+++... ...+.|+++||+|+|++. ..+ |+|+||+|+
T Consensus 293 ~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~-----l~~isl~i~ 367 (587)
T 3qf4_A 293 MFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPV-----LSGVNFSVK 367 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSSSCCS-----EEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCCCCcc-----eeceEEEEc
Confidence 345566677888899999999999999986654322 123469999999999643 333 999999999
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHH
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMR 181 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~ 181 (317)
+||++||+||||||||||+++|+|+++ |++|+|.+||++ +..++...++++
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~i~g~~----------------------i~~~~~~~~r~~-- 418 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLID-----PERGRVEVDELD----------------------VRTVKLKDLRGH-- 418 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSSC-----CSEEEEEESSSB----------------------GGGBCHHHHHHH--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEECCEE----------------------cccCCHHHHHhh--
Confidence 999999999999999999999999999 999999999998 677888888877
Q ss_pred HhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHH
Q 021147 182 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRA 259 (317)
Q Consensus 182 ~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~ 259 (317)
|+|+||++.+|+. ||+||+.++.+.. ..+++.++++.++++ ...+|+|+.+.++++| .+|||||
T Consensus 419 -----i~~v~Q~~~lf~~--tv~eni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~--~~LSgGq 484 (587)
T 3qf4_A 419 -----ISAVPQETVLFSG--TIKENLKWGREDA-----TDDEIVEAAKIAQIHDFIISLPEGYDSRVERGG--RNFSGGQ 484 (587)
T ss_dssp -----EEEECSSCCCCSE--EHHHHHTTTCSSC-----CHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSS--CSSCHHH
T ss_pred -----eEEECCCCcCcCc--cHHHHHhccCCCC-----CHHHHHHHHHHhCcHHHHHhcccchhhHhcCCC--CCcCHHH
Confidence 9999999998865 9999998765322 224467788888874 4457889999999998 8999999
Q ss_pred HHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 260 RIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 260 ~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
|||++||||++++|+++||||||+ ||+.+++.+.+.++++.+. ..|+++.+. .+|||
T Consensus 485 rQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i 547 (587)
T 3qf4_A 485 KQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKI 547 (587)
T ss_dssp HHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEE
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEE
Confidence 999999999999999999999999 9999999999999887432 345666654 56764
No 8
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=7.8e-43 Score=354.02 Aligned_cols=241 Identities=15% Similarity=0.187 Sum_probs=200.0
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc------CCCCceEEEeEEEEcCCC-CccccccCceeeeeEec
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT------RIGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVP 101 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~ 101 (317)
.+..+.......|..+.++..+.+|+.++++.+++... ...++|+++||+|+|+++ ..+ |+|+||+|+
T Consensus 293 ~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~-----l~~i~l~i~ 367 (582)
T 3b5x_A 293 GLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPA-----LSHVSFSIP 367 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCCCeEEEEEEEEEcCCCCccc-----cccceEEEC
Confidence 45667788888999999999999999999986654321 123579999999999753 344 999999999
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHH
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMR 181 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~ 181 (317)
+||++||+||||||||||+|+|+|+++ |++|+|.++|++ +...+...++++
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~~-----p~~G~i~~~g~~----------------------~~~~~~~~~~~~-- 418 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFYD-----VDSGSICLDGHD----------------------VRDYKLTNLRRH-- 418 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCCEEEECCEE----------------------hhhCCHHHHhcC--
Confidence 999999999999999999999999999 999999999987 555666666665
Q ss_pred HhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHH
Q 021147 182 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRA 259 (317)
Q Consensus 182 ~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~ 259 (317)
|||+||++.+|+ .||+||+.++.. +. ...+++.++++.++++ ...+|+|+++.++++| .+|||||
T Consensus 419 -----i~~v~Q~~~l~~--~tv~eni~~~~~-~~---~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~--~~LSgGq 485 (582)
T 3b5x_A 419 -----FALVSQNVHLFN--DTIANNIAYAAE-GE---YTREQIEQAARQAHAMEFIENMPQGLDTVIGENG--TSLSGGQ 485 (582)
T ss_pred -----eEEEcCCCcccc--ccHHHHHhccCC-CC---CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCC--CcCCHHH
Confidence 999999998886 499999998641 11 1235578889999984 4457889999999998 8999999
Q ss_pred HHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 260 RIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 260 ~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
|||++||||++++|+++||||||+ ||+.+++.+.+.++++.+. ..|+++.+. .+|||
T Consensus 486 ~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i 548 (582)
T 3b5x_A 486 RQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEI 548 (582)
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEE
Confidence 999999999999999999999999 9999999999999987531 445666554 46764
No 9
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=8.1e-43 Score=353.91 Aligned_cols=241 Identities=17% Similarity=0.191 Sum_probs=200.1
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc------CCCCceEEEeEEEEcCCC-CccccccCceeeeeEec
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT------RIGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVP 101 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~ 101 (317)
.+..+.......|..+.++..+.+|+.++++.+++... ...++|+++||+|+|+++ ..+ |+|+||+|+
T Consensus 293 ~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~-----l~~v~~~i~ 367 (582)
T 3b60_A 293 ALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVPA-----LRNINLKIP 367 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCCCBCCSCCCCCEEEEEEEECSSSSSCCS-----EEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCcEEEEEEEEEcCCCCCcc-----ccceeEEEc
Confidence 45567777888999999999999999999986654321 123579999999999743 344 999999999
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHH
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMR 181 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~ 181 (317)
+||++||+||||||||||+|+|+|+++ |++|+|.++|++ +...+...++++
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~----------------------~~~~~~~~~~~~-- 418 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYD-----IDEGHILMDGHD----------------------LREYTLASLRNQ-- 418 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTC-----CSEEEEEETTEE----------------------TTTBCHHHHHHT--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccC-----CCCCeEEECCEE----------------------ccccCHHHHHhh--
Confidence 999999999999999999999999999 999999999987 556676677766
Q ss_pred HhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHH
Q 021147 182 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRA 259 (317)
Q Consensus 182 ~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~ 259 (317)
|||+||++.+|+. ||+||+.++.. +. ...+++.++++.++++ ...+|+|+.+.++++| .+|||||
T Consensus 419 -----i~~v~Q~~~l~~~--tv~eni~~~~~-~~---~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~--~~LSgGq 485 (582)
T 3b60_A 419 -----VALVSQNVHLFND--TVANNIAYART-EE---YSREQIEEAARMAYAMDFINKMDNGLDTIIGENG--VLLSGGQ 485 (582)
T ss_dssp -----EEEECSSCCCCSS--BHHHHHHTTTT-SC---CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTS--CSSCHHH
T ss_pred -----CeEEccCCcCCCC--CHHHHHhccCC-CC---CCHHHHHHHHHHcCCHHHHHhccccccccccCCC--CCCCHHH
Confidence 9999999988864 99999998641 11 1235578888988884 4457889999998888 8999999
Q ss_pred HHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 260 RIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 260 ~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
|||++||||++++|+++||||||+ ||+.+++.+.+.++++.+. ..|+++.+. .+|||
T Consensus 486 ~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i 548 (582)
T 3b60_A 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEI 548 (582)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEE
T ss_pred HHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEE
Confidence 999999999999999999999999 9999999999999997532 556676665 47764
No 10
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.9e-42 Score=330.82 Aligned_cols=205 Identities=16% Similarity=0.188 Sum_probs=165.4
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
.+++|+++||+++|+.+.. .+.+|+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 21 ~~~mi~v~~ls~~y~~~~~--~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~-----p~~G~I~i~G~~-- 91 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTR--TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTEGSVLVDGQE-- 91 (366)
T ss_dssp --CCEEEEEEEEEEECSSS--EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEE--
T ss_pred CCceEEEEeEEEEeCCCCC--CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC-----CCceEEEECCEE--
Confidence 4568999999999964321 0112999999999999999999999999999999999999 999999999987
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQI 226 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~ 226 (317)
+..++...+++. .+.|||+||++.+++ .+||++|+.++..... ......+++.+
T Consensus 92 --------------------i~~~~~~~~~~~----r~~Ig~v~Q~~~l~~-~~TV~env~~~~~~~~~~~~~~~~~v~~ 146 (366)
T 3tui_C 92 --------------------LTTLSESELTKA----RRQIGMIFQHFNLLS-SRTVFGNVALPLELDNTPKDEVKRRVTE 146 (366)
T ss_dssp --------------------CSSCCHHHHHHH----HTTEEEECSSCCCCT-TSCHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred --------------------CCcCCHHHHHHH----hCcEEEEeCCCccCC-CCCHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 555555444321 234999999997654 6899999998653322 22345567888
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.. +.+.++ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.++|+++.+.
T Consensus 147 lL~~vgL~~--~~~~~~---------~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~ 215 (366)
T 3tui_C 147 LLSLVGLGD--KHDSYP---------SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGL 215 (366)
T ss_dssp HHHHHTCGG--GTTCCT---------TTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHcCCch--HhcCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCC
Confidence 999999843 223455 6999999999999999999999999999999 9999999999999998653
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+..+||||
T Consensus 216 Tii~vTHdl~~~~~~aDrv 234 (366)
T 3tui_C 216 TILLITHEMDVVKRICDCV 234 (366)
T ss_dssp EEEEEESCHHHHHHHCSEE
T ss_pred EEEEEecCHHHHHHhCCEE
Confidence 567788888888875
No 11
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=7.9e-42 Score=315.54 Aligned_cols=197 Identities=15% Similarity=0.169 Sum_probs=164.3
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
+.++|+++||++.|++. .+ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 8 ~~~~l~~~~l~~~~~~~-~v-----L~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~-- 74 (266)
T 4g1u_C 8 PVALLEASHLHYHVQQQ-AL-----INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS-----PSHGECHLLGQN-- 74 (266)
T ss_dssp CCCEEEEEEEEEEETTE-EE-----EEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC-----CSSCEEEETTEE--
T ss_pred CcceEEEEeEEEEeCCe-eE-----EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEE--
Confidence 34689999999999754 34 999999999999999999999999999999999999 999999999987
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 227 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~ 227 (317)
+..++...+++. ++|++|++.++. .+||++|+.++.... ......+++.++
T Consensus 75 --------------------~~~~~~~~~~~~-------i~~v~q~~~~~~-~~tv~e~l~~~~~~~-~~~~~~~~~~~~ 125 (266)
T 4g1u_C 75 --------------------LNSWQPKALART-------RAVMRQYSELAF-PFSVSEVIQMGRAPY-GGSQDRQALQQV 125 (266)
T ss_dssp --------------------TTTSCHHHHHHH-------EEEECSCCCCCS-CCBHHHHHHGGGTTS-CSTTHHHHHHHH
T ss_pred --------------------CCcCCHHHHhhe-------EEEEecCCccCC-CCCHHHHHHhhhhhc-CcHHHHHHHHHH
Confidence 555666666655 999999987543 579999999865322 223345667888
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceecc------ccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGI------PPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~------~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
++.+++... . +... .+||||||||++|||||+. +|+++||||||+ ||+.++..+.+.|+++.
T Consensus 126 l~~~~l~~~--~-~~~~--------~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~ 194 (266)
T 4g1u_C 126 MAQTDCLAL--A-QRDY--------RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLT 194 (266)
T ss_dssp HHHTTCSTT--T-TSBG--------GGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHcCChhH--h-cCCc--------ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHH
Confidence 999987422 2 2333 6899999999999999999 999999999999 99999999999999986
Q ss_pred Hh-------cCCCcchhhcccCCC
Q 021147 301 EH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 301 ~~-------~~~~~~~~~~~~~~~ 317 (317)
+. ..|++..+..++|||
T Consensus 195 ~~~~~tvi~vtHdl~~~~~~~d~v 218 (266)
T 4g1u_C 195 RQEPLAVCCVLHDLNLAALYADRI 218 (266)
T ss_dssp HHSSEEEEEECSCHHHHHHHCSEE
T ss_pred HcCCCEEEEEEcCHHHHHHhCCEE
Confidence 53 578888888888875
No 12
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=3.6e-42 Score=349.98 Aligned_cols=243 Identities=20% Similarity=0.230 Sum_probs=198.7
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc--------CCCCc-eEEEeEEEEcCCC--CccccccCceeee
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT--------RIGSL-TDAKNKILSYTPG--AWIENVGGMTLSD 97 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-I~~~nls~~y~~~--~~~~~~~~L~~is 97 (317)
.+..+.......|..+.++..+.+|+.++++.+++... ...+. |+++||+|+|++. ..+ |+|+|
T Consensus 290 ~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~v-----l~~is 364 (595)
T 2yl4_A 290 WVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPI-----FQDFS 364 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEE-----EEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCCCCcCCCCCeEEEEEEEEEeCCCCCCcc-----ccceE
Confidence 44566777888889999999999999999986543211 11235 9999999999753 234 99999
Q ss_pred eEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHH
Q 021147 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLR 177 (317)
Q Consensus 98 l~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r 177 (317)
|+|++||++||+||||||||||+|+|+|+++ |++|+|.++|++ +...+...++
T Consensus 365 l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~----------------------i~~~~~~~~~ 417 (595)
T 2yl4_A 365 LSIPSGSVTALVGPSGSGKSTVLSLLLRLYD-----PASGTISLDGHD----------------------IRQLNPVWLR 417 (595)
T ss_dssp EEECTTCEEEEECCTTSSSTHHHHHHTTSSC-----CSEEEEEETTEE----------------------TTTBCHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCcEEEECCEE----------------------hhhCCHHHHH
Confidence 9999999999999999999999999999999 999999999987 5566766676
Q ss_pred HHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcC
Q 021147 178 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSL 255 (317)
Q Consensus 178 ~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~L 255 (317)
++ |||+||++.+|+ .||+||+.++..... ....+++.++++.++++ ...+++|+.+.++++| .+|
T Consensus 418 ~~-------i~~v~Q~~~l~~--~tv~eni~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~--~~L 484 (595)
T 2yl4_A 418 SK-------IGTVSQEPILFS--CSIAENIAYGADDPS--SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKG--VLL 484 (595)
T ss_dssp HS-------EEEECSSCCCCS--SBHHHHHHTTSSSTT--TSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSS--CCC
T ss_pred hc-------eEEEccCCcccC--CCHHHHHhhcCCCcc--ccCHHHHHHHHHHcCCHHHHHhCcccccccccCCC--CcC
Confidence 66 999999998876 499999998753211 12245678889999884 3457788999888888 899
Q ss_pred cHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 256 TDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 256 SgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
|||||||++||||++++|+++||||||+ ||+.+++.+.+.++++.+. ..|+++.+.. +|||
T Consensus 485 SgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i 551 (595)
T 2yl4_A 485 SGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKN-ANMV 551 (595)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHH-SSEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHc-CCEE
Confidence 9999999999999999999999999999 9999999999999997542 4566665543 6664
No 13
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.8e-41 Score=311.38 Aligned_cols=197 Identities=16% Similarity=0.152 Sum_probs=160.0
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+++|+++||+++|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 5 ~~~l~i~~l~~~y~~~-~v-----l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~--- 70 (257)
T 1g6h_A 5 MEILRTENIVKYFGEF-KA-----LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-----ADEGRVYFENKD--- 70 (257)
T ss_dssp CEEEEEEEEEEEETTE-EE-----EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEE---
T ss_pred CcEEEEeeeEEEECCE-ee-----EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEE---
Confidence 3579999999999653 34 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChH-HHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc---C----------
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSS-SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM---E---------- 214 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~---~---------- 214 (317)
+...+.. .+++ .|||+||++.+++ .+||.+|+.++... .
T Consensus 71 -------------------~~~~~~~~~~~~-------~i~~v~q~~~l~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~ 123 (257)
T 1g6h_A 71 -------------------ITNKEPAELYHY-------GIVRTFQTPQPLK-EMTVLENLLIGEICPGESPLNSLFYKKW 123 (257)
T ss_dssp -------------------CTTCCHHHHHHH-------TEEECCCCCGGGG-GSBHHHHHHGGGTSTTSCHHHHHHHCSS
T ss_pred -------------------CCCCCHHHHHhC-------CEEEEccCCccCC-CCcHHHHHHHHHhhhccCcccccccccc
Confidence 3333322 2233 3999999987554 68999999886432 1
Q ss_pred -CCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHH
Q 021147 215 -GDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELII 292 (317)
Q Consensus 215 -~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l 292 (317)
.......+++.++++.+++.... +... .+||||||||++|||||+.+|+++||||||+ ||+.++..+
T Consensus 124 ~~~~~~~~~~~~~~l~~~~l~~~~---~~~~--------~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l 192 (257)
T 1g6h_A 124 IPKEEEMVEKAFKILEFLKLSHLY---DRKA--------GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI 192 (257)
T ss_dssp CCCCHHHHHHHHHHHHHTTCGGGT---TSBG--------GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHcCCchhh---CCCc--------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHH
Confidence 11233456677889999874222 2333 7999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 293 VDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 293 ~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
.+.|+++.+. ..|++..+..++|||
T Consensus 193 ~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v 223 (257)
T 1g6h_A 193 FNHVLELKAKGITFLIIEHRLDIVLNYIDHL 223 (257)
T ss_dssp HHHHHHHHHTTCEEEEECSCCSTTGGGCSEE
T ss_pred HHHHHHHHHCCCEEEEEecCHHHHHHhCCEE
Confidence 9999998653 578888888888875
No 14
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.6e-41 Score=307.95 Aligned_cols=200 Identities=16% Similarity=0.247 Sum_probs=157.5
Q ss_pred ceEEEeEEEEcCCCC---ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 71 LTDAKNKILSYTPGA---WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 71 ~I~~~nls~~y~~~~---~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
+|+++||+|+|+++. .+ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~-----L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~-- 68 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYA-----LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-----PTEGEVYIDNIK-- 68 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEE-----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEE--
T ss_pred CEEEEEEEEEeCCCCcceee-----EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCceEEEECCEE--
Confidence 589999999996432 23 999999999999999999999999999999999999 999999999987
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC---C-CChHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME---G-DSDVEKQY 223 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~---~-~~~~~~~~ 223 (317)
+..++...+.+. ..+.|||+||++.+++ .+||++|+.++.... . ......++
T Consensus 69 --------------------~~~~~~~~~~~~---~~~~i~~v~Q~~~l~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~ 124 (235)
T 3tif_A 69 --------------------TNDLDDDELTKI---RRDKIGFVFQQFNLIP-LLTALENVELPLIFKYRGAMSGEERRKR 124 (235)
T ss_dssp --------------------CTTCCHHHHHHH---HHHHEEEECTTCCCCT-TSCHHHHHHHHHHTCSSSCCCHHHHHHH
T ss_pred --------------------cccCCHHHHHHH---hhccEEEEecCCccCC-CCcHHHHHHHHHHhhhccCCCHHHHHHH
Confidence 445555443211 1123999999997554 579999998764321 1 12334566
Q ss_pred HHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 224 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 224 ~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
+.++++.+++... +.+.++ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.++++.+.
T Consensus 125 ~~~~l~~~~l~~~-~~~~~~---------~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~ 194 (235)
T 3tif_A 125 ALECLKMAELEER-FANHKP---------NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEE 194 (235)
T ss_dssp HHHHHHHTTCCGG-GTTCCG---------GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCChh-hhhCCh---------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH
Confidence 7788888887421 112333 7999999999999999999999999999999 9999999999999998643
Q ss_pred -------cCCCcchhhcccCCC
Q 021147 303 -------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -------~~~~~~~~~~~~~~~ 317 (317)
..|++..+ ..+|||
T Consensus 195 ~g~tvi~vtHd~~~~-~~~d~i 215 (235)
T 3tif_A 195 DGKTVVVVTHDINVA-RFGERI 215 (235)
T ss_dssp HCCEEEEECSCHHHH-TTSSEE
T ss_pred cCCEEEEEcCCHHHH-HhCCEE
Confidence 66777644 567764
No 15
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.8e-41 Score=305.40 Aligned_cols=199 Identities=15% Similarity=0.132 Sum_probs=156.3
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||+++|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 3 ~~l~~~~l~~~y~~~-~~-----l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~---- 67 (224)
T 2pcj_A 3 EILRAENIKKVIRGY-EI-----LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA-----PTEGKVFLEGKE---- 67 (224)
T ss_dssp EEEEEEEEEEEETTE-EE-----EEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC-----CSEEEEEETTEE----
T ss_pred cEEEEEeEEEEECCE-ee-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEE----
Confidence 479999999999753 34 999999999999999999999999999999999999 999999999986
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC-hHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS-DVEKQYNQIVA 228 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~a 228 (317)
+...+....... ..+.|||+||++.+++ .+||.+|+.++....... ....+++.+++
T Consensus 68 ------------------~~~~~~~~~~~~---~~~~i~~v~q~~~l~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l 125 (224)
T 2pcj_A 68 ------------------VDYTNEKELSLL---RNRKLGFVFQFHYLIP-ELTALENVIVPMLKMGKPKKEAKERGEYLL 125 (224)
T ss_dssp ------------------CCSSCHHHHHHH---HHHHEEEECSSCCCCT-TSCHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ------------------CCCCCHHHHHHH---HhCcEEEEecCcccCC-CCCHHHHHHhHHHHcCCCHHHHHHHHHHHH
Confidence 434443322110 0123999999987554 689999998764322212 23345677889
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++.... +... .+||||||||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 126 ~~~~l~~~~---~~~~--------~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi 194 (224)
T 2pcj_A 126 SELGLGDKL---SRKP--------YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIV 194 (224)
T ss_dssp HHTTCTTCT---TCCG--------GGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHcCCchhh---hCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 999974222 2333 7999999999999999999999999999999 9999999999999998643
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+ ..+|+|
T Consensus 195 ~vtHd~~~~-~~~d~v 209 (224)
T 2pcj_A 195 MVTHERELA-ELTHRT 209 (224)
T ss_dssp EECSCHHHH-TTSSEE
T ss_pred EEcCCHHHH-HhCCEE
Confidence 45666665 567764
No 16
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.9e-41 Score=312.56 Aligned_cols=196 Identities=13% Similarity=0.206 Sum_probs=158.6
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++||+++|++. .+ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 23 ~~l~i~~l~~~y~~~-~v-----L~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~---- 87 (263)
T 2olj_A 23 QMIDVHQLKKSFGSL-EV-----LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED-----FDEGEIIIDGIN---- 87 (263)
T ss_dssp CSEEEEEEEEEETTE-EE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEE----
T ss_pred heEEEEeEEEEECCE-EE-----EEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCEE----
Confidence 479999999999653 34 999999999999999999999999999999999999 999999999986
Q ss_pred eEecccCCCCcccccceeec--cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhh-ccCCCC-hHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK-SMEGDS-DVEKQYNQ 225 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~-~~~~~~-~~~~~~~~ 225 (317)
+. ..+...+++. |||+||++.+++ .+||++|+.++. ...... ....+++.
T Consensus 88 ------------------i~~~~~~~~~~~~~-------i~~v~Q~~~l~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 141 (263)
T 2olj_A 88 ------------------LKAKDTNLNKVREE-------VGMVFQRFNLFP-HMTVLNNITLAPMKVRKWPREKAEAKAM 141 (263)
T ss_dssp ------------------SSSTTCCHHHHHHH-------EEEECSSCCCCT-TSCHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred ------------------CCCccccHHHHhCc-------EEEEeCCCcCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 32 2233344444 999999987554 679999998853 222212 23345677
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++++.+++.... +... .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 142 ~~l~~~~L~~~~---~~~~--------~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~ 210 (263)
T 2olj_A 142 ELLDKVGLKDKA---HAYP--------DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGM 210 (263)
T ss_dssp HHHHHTTCGGGT---TSCG--------GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCchHh---cCCh--------hhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCC
Confidence 889999974222 2333 7999999999999999999999999999999 9999999999999998653
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|||
T Consensus 211 tvi~vtHd~~~~~~~~d~v 229 (263)
T 2olj_A 211 TMVVVTHEMGFAREVGDRV 229 (263)
T ss_dssp EEEEECSCHHHHHHHCSEE
T ss_pred EEEEEcCCHHHHHHhCCEE
Confidence 567777777778874
No 17
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.9e-41 Score=308.30 Aligned_cols=197 Identities=15% Similarity=0.150 Sum_probs=155.5
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||+++|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 5 ~~l~~~~l~~~y~~~-~v-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~---- 69 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAI-HA-----IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-----AQKGKIIFNGQD---- 69 (240)
T ss_dssp EEEEEEEEEEEETTE-EE-----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEE----
T ss_pred ceEEEEeEEEEECCe-eE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEE----
Confidence 479999999999753 34 999999999999999999999999999999999999 999999999986
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
+...+...+++ +.|||+||++.+++ .+||+||+.++...........+.+.++++
T Consensus 70 ------------------~~~~~~~~~~~------~~i~~v~q~~~l~~-~ltv~enl~~~~~~~~~~~~~~~~~~~~l~ 124 (240)
T 1ji0_A 70 ------------------ITNKPAHVINR------MGIALVPEGRRIFP-ELTVYENLMMGAYNRKDKEGIKRDLEWIFS 124 (240)
T ss_dssp ------------------CTTCCHHHHHH------TTEEEECSSCCCCT-TSBHHHHHHGGGTTCCCSSHHHHHHHHHHH
T ss_pred ------------------CCCCCHHHHHh------CCEEEEecCCccCC-CCcHHHHHHHhhhcCCCHHHHHHHHHHHHH
Confidence 43444333221 23999999987554 579999999864211122333455667777
Q ss_pred HcC-CCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 230 TFN-CPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 230 ~~~-l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
.++ +... . +... .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 125 ~~~~l~~~--~-~~~~--------~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi 193 (240)
T 1ji0_A 125 LFPRLKER--L-KQLG--------GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193 (240)
T ss_dssp HCHHHHTT--T-TSBS--------SSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HcccHhhH--h-cCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 773 5221 1 2233 6999999999999999999999999999999 9999999999999998642
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 194 ~vtHd~~~~~~~~d~v 209 (240)
T 1ji0_A 194 LVEQNALGALKVAHYG 209 (240)
T ss_dssp EEESCHHHHHHHCSEE
T ss_pred EEecCHHHHHHhCCEE
Confidence 466676777777764
No 18
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.5e-41 Score=308.90 Aligned_cols=198 Identities=20% Similarity=0.231 Sum_probs=156.8
Q ss_pred ceEEEeEEEEcC-CCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 71 LTDAKNKILSYT-PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 71 ~I~~~nls~~y~-~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.|+++||+|+|+ +...+ |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 7 ~~~~~~l~~~y~~~~~~v-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~i~g~~---- 72 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVI-----LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-----PENGQVLIDGHD---- 72 (247)
T ss_dssp EEEEEEEEEESSTTSCEE-----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEE----
T ss_pred ceeEEEEEEEeCCCCcce-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEE----
Confidence 589999999994 23344 999999999999999999999999999999999999 999999999986
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
+...+...+++. |||+||++.++. .||++|+.++... . ..+++.++++
T Consensus 73 ------------------~~~~~~~~~~~~-------i~~v~Q~~~l~~--~tv~enl~~~~~~--~---~~~~~~~~l~ 120 (247)
T 2ff7_A 73 ------------------LALADPNWLRRQ-------VGVVLQDNVLLN--RSIIDNISLANPG--M---SVEKVIYAAK 120 (247)
T ss_dssp ------------------TTTSCHHHHHHH-------EEEECSSCCCTT--SBHHHHHTTTCTT--C---CHHHHHHHHH
T ss_pred ------------------hhhCCHHHHHhc-------EEEEeCCCcccc--ccHHHHHhccCCC--C---CHHHHHHHHH
Confidence 444555555555 999999998775 4999999875321 1 1334667778
Q ss_pred HcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 230 TFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 230 ~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
.+++. ...++.++...+...+ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 121 ~~~l~~~~~~~~~gl~~~~~~~~--~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tvi 198 (247)
T 2ff7_A 121 LAGAHDFISELREGYNTIVGEQG--AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVI 198 (247)
T ss_dssp HHTCHHHHHTSTTGGGCBCSTTT--TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEE
T ss_pred HhChHHHHHhCcchhhhhhhCCC--CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 88873 1223334444333333 7999999999999999999999999999999 9999999999999998421
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+.. +|||
T Consensus 199 ivtH~~~~~~~-~d~v 213 (247)
T 2ff7_A 199 IIAHRLSTVKN-ADRI 213 (247)
T ss_dssp EECSSGGGGTT-SSEE
T ss_pred EEeCCHHHHHh-CCEE
Confidence 5566666654 7764
No 19
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2.4e-41 Score=326.21 Aligned_cols=195 Identities=16% Similarity=0.185 Sum_probs=161.0
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|.+|+++||+|+|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 1 M~~l~~~~l~~~yg~~-~~-----L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~G~I~i~G~~--- 66 (381)
T 3rlf_A 1 MASVQLQNVTKAWGEV-VV-----SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-----ITSGDLFIGEKR--- 66 (381)
T ss_dssp -CCEEEEEEEEEETTE-EE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEE---
T ss_pred CCEEEEEeEEEEECCE-EE-----EeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC-----CCCeEEEECCEE---
Confidence 3469999999999754 33 999999999999999999999999999999999999 999999999987
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC-ChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD-SDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~ 227 (317)
+...+... + .||||||++.+|+ .+||++|+.++...... .....+++.++
T Consensus 67 -------------------~~~~~~~~--r-------~ig~VfQ~~~l~p-~ltV~eni~~~~~~~~~~~~~~~~~v~~~ 117 (381)
T 3rlf_A 67 -------------------MNDTPPAE--R-------GVGMVFQSYALYP-HLSVAENMSFGLKLAGAKKEVINQRVNQV 117 (381)
T ss_dssp -------------------CTTCCGGG--S-------CEEEECTTCCCCT-TSCHHHHHTHHHHHTTCCHHHHHHHHHHH
T ss_pred -------------------CCCCCHHH--C-------CEEEEecCCcCCC-CCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33333321 2 3999999997654 68999999987543332 23455678889
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++.. +.+.++ .+||||||||++|||||+.+|+++||||||+ ||+..+..+.+.|+++.+.
T Consensus 118 l~~~~L~~--~~~r~p---------~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~t 186 (381)
T 3rlf_A 118 AEVLQLAH--LLDRKP---------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT 186 (381)
T ss_dssp HHHTTCGG--GTTCCG---------GGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCE
T ss_pred HHHcCCch--hhcCCh---------hHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 99999843 223444 7999999999999999999999999999999 9999999999999998653
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|||
T Consensus 187 ii~vTHd~~ea~~~aDri 204 (381)
T 3rlf_A 187 MIYVTHDQVEAMTLADKI 204 (381)
T ss_dssp EEEECSCHHHHHHHCSEE
T ss_pred EEEEECCHHHHHHhCCEE
Confidence 677777777788875
No 20
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.1e-41 Score=309.96 Aligned_cols=197 Identities=15% Similarity=0.145 Sum_probs=157.3
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
-+++|+++||+++|++. .+ |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 12 ~~~~l~i~~l~~~y~~~-~v-----l~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~-- 78 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGKK-EI-----LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-----PSSGIVTVFGKN-- 78 (256)
T ss_dssp --CCEEEEEEEEEETTE-EE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEE--
T ss_pred cCCeEEEEEEEEEECCE-EE-----EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEE--
Confidence 46889999999999643 34 999999999999999999999999999999999999 999999999986
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc-CCCChHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM-EGDSDVEKQYNQI 226 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~-~~~~~~~~~~~~~ 226 (317)
+.. ....+++ .|||+||++.+++ .+||++|+.+.... ........+++.+
T Consensus 79 --------------------~~~-~~~~~~~-------~i~~v~q~~~l~~-~ltv~enl~~~~~~~~~~~~~~~~~~~~ 129 (256)
T 1vpl_A 79 --------------------VVE-EPHEVRK-------LISYLPEEAGAYR-NMQGIEYLRFVAGFYASSSSEIEEMVER 129 (256)
T ss_dssp --------------------TTT-CHHHHHT-------TEEEECTTCCCCT-TSBHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred --------------------CCc-cHHHHhh-------cEEEEcCCCCCCC-CCcHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 322 2223333 3999999987554 67999999875422 2111223456778
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... +... .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 130 ~l~~~gL~~~~---~~~~--------~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~t 198 (256)
T 1vpl_A 130 ATEIAGLGEKI---KDRV--------STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198 (256)
T ss_dssp HHHHHCCGGGG---GSBG--------GGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHCCCchHh---cCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCE
Confidence 89999974222 2233 7999999999999999999999999999999 9999999999999998643
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
+.|++..+..++|||
T Consensus 199 iiivtHd~~~~~~~~d~v 216 (256)
T 1vpl_A 199 ILVSSHNMLEVEFLCDRI 216 (256)
T ss_dssp EEEEECCHHHHTTTCSEE
T ss_pred EEEEcCCHHHHHHHCCEE
Confidence 567777777777764
No 21
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=5.8e-41 Score=308.98 Aligned_cols=196 Identities=16% Similarity=0.171 Sum_probs=157.7
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||+++|++. .+ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 5 ~~l~i~~l~~~y~~~-~v-----l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~---- 69 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGH-EV-----LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGAIIVNGQN---- 69 (262)
T ss_dssp CCEEEEEEEEEETTE-EE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEE----
T ss_pred ceEEEeeEEEEECCE-EE-----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEE----
Confidence 479999999999653 34 999999999999999999999999999999999999 999999999986
Q ss_pred eEecccCCCCcccccceeec----------cCChH---HHHHHHHHhhhhccccccccccccchhhHHHHHHhhh-ccCC
Q 021147 150 YFLQEYTIPRGVRHGELVIR----------RSDSS---SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK-SMEG 215 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~----------~~~~~---~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~-~~~~ 215 (317)
+. .++.. .+++. |||+||++.++ ..+||++|+.++. ....
T Consensus 70 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~-------i~~v~Q~~~l~-~~ltv~e~l~~~~~~~~~ 123 (262)
T 1b0u_A 70 ------------------INLVRDKDGQLKVADKNQLRLLRTR-------LTMVFQHFNLW-SHMTVLENVMEAPIQVLG 123 (262)
T ss_dssp ------------------CCEEECTTSSEEESCHHHHHHHHHH-------EEEECSSCCCC-TTSCHHHHHHHHHHHTTC
T ss_pred ------------------ccccccccccccccChhhHHHHhcc-------eEEEecCcccC-CCCcHHHHHHhhHHHhcC
Confidence 22 12222 23333 99999998655 4689999998853 2222
Q ss_pred CC-hHHHHHHHHHHHHcCCCcc-cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHH
Q 021147 216 DS-DVEKQYNQIVATTFNCPYL-SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELII 292 (317)
Q Consensus 216 ~~-~~~~~~~~~~a~~~~l~~~-~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l 292 (317)
.. ....+++.++++.+++... . +... .+||||||||++|||||+.+|+++||||||+ ||+.++..+
T Consensus 124 ~~~~~~~~~~~~~l~~~~L~~~~~---~~~~--------~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~ 192 (262)
T 1b0u_A 124 LSKHDARERALKYLAKVGIDERAQ---GKYP--------VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEV 192 (262)
T ss_dssp CCHHHHHHHHHHHHHHTTCCHHHH---TSCG--------GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCchhh---cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence 12 2334567788999998532 2 2233 7999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 293 VDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 293 ~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
.+.|+++.+. ..|++..+..++|||
T Consensus 193 ~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v 223 (262)
T 1b0u_A 193 LRIMQQLAEEGKTMVVVTHEMGFARHVSSHV 223 (262)
T ss_dssp HHHHHHHHHTTCCEEEECSCHHHHHHHCSEE
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 9999998653 567777787788874
No 22
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3.2e-41 Score=323.13 Aligned_cols=197 Identities=14% Similarity=0.102 Sum_probs=158.0
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||+++|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|++..
T Consensus 4 ~l~i~~ls~~y~~~-~~-----L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~G~I~i~G~~i~--- 69 (359)
T 3fvq_A 4 ALHIGHLSKSFQNT-PV-----LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ-----PDSGEISLSGKTIF--- 69 (359)
T ss_dssp CEEEEEEEEEETTE-EE-----EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEE---
T ss_pred EEEEEeEEEEECCE-EE-----EEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC-----CCCcEEEECCEECc---
Confidence 79999999999654 34 999999999999999999999999999999999999 99999999998610
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-CCChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~a~ 229 (317)
. . -..... .++ .||||||++.+|+ .+||++|+.++.... .......+++.++++
T Consensus 70 --~------------~-~~~~~~--~~r-------~ig~vfQ~~~l~p-~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~ 124 (359)
T 3fvq_A 70 --S------------K-NTNLPV--RER-------RLGYLVQEGVLFP-HLTVYRNIAYGLGNGKGRTAQERQRIEAMLE 124 (359)
T ss_dssp --S------------S-SCBCCG--GGS-------CCEEECTTCCCCT-TSCHHHHHHTTSTTSSCCSHHHHHHHHHHHH
T ss_pred --c------------c-ccccch--hhC-------CEEEEeCCCcCCC-CCCHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 0 0 011111 122 3999999987654 689999999875432 233455677888999
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
.+++... .+.++ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.+.++.+.
T Consensus 125 ~~gL~~~--~~r~~---------~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi 193 (359)
T 3fvq_A 125 LTGISEL--AGRYP---------HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAV 193 (359)
T ss_dssp HHTCGGG--TTSCG---------GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HcCCchH--hcCCh---------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 9998432 23344 7999999999999999999999999999999 9999999999888776543
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|||
T Consensus 194 ~vTHd~~ea~~~aDri 209 (359)
T 3fvq_A 194 FVSHDREEALQYADRI 209 (359)
T ss_dssp EECCCHHHHHHHCSEE
T ss_pred EEeCCHHHHHHHCCEE
Confidence 667777777778875
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.6e-40 Score=308.71 Aligned_cols=198 Identities=14% Similarity=0.100 Sum_probs=155.7
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
..+|+++||+++|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 19 ~~~l~~~~l~~~y~~~-~v-----L~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~--- 84 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQGK-TI-----LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP-----ATSGTVNLFGKM--- 84 (279)
T ss_dssp CEEEEEEEEEEEETTE-EE-----EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTBC---
T ss_pred CceEEEEeEEEEECCE-EE-----EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCeEEEECCEE---
Confidence 3479999999999753 34 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeec--cCChHHHHHHHHHhhhhcccccccccc-ccchhhHHHHHHhhhcc-----CCCChHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRK-VNFVIFVVDGLAVLKSM-----EGDSDVE 220 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~ig~v~Q~~~~-~~~~~tv~eni~~~~~~-----~~~~~~~ 220 (317)
+. ..+...+++. |||+||++.+ +...+||+||+.++... .......
T Consensus 85 -------------------~~~~~~~~~~~~~~-------i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~ 138 (279)
T 2ihy_A 85 -------------------PGKVGYSAETVRQH-------IGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138 (279)
T ss_dssp -------------------CC---CCHHHHHTT-------EEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHH
T ss_pred -------------------cccccCCHHHHcCc-------EEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHH
Confidence 33 3344444443 9999999864 33456999999875311 1112334
Q ss_pred HHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 221 KQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 221 ~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
.+++.++++.+++.... +... .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++
T Consensus 139 ~~~~~~~l~~~gl~~~~---~~~~--------~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l 207 (279)
T 2ihy_A 139 RNEAHQLLKLVGMSAKA---QQYI--------GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSL 207 (279)
T ss_dssp HHHHHHHHHHTTCGGGT---TSBG--------GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHh---cCCh--------hhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 45677889999874222 2333 7999999999999999999999999999999 9999999999999998
Q ss_pred HHh--------cCCCcchhhcccCCC
Q 021147 300 LEH--------ADRNLSCKSCARNKV 317 (317)
Q Consensus 300 ~~~--------~~~~~~~~~~~~~~~ 317 (317)
.+. ..|++..+...+|||
T Consensus 208 ~~~g~tv~~iivtHd~~~~~~~~d~v 233 (279)
T 2ihy_A 208 SDSYPTLAMIYVTHFIEEITANFSKI 233 (279)
T ss_dssp HHHCTTCEEEEEESCGGGCCTTCCEE
T ss_pred HHCCCEEEEEEEecCHHHHHHhCCEE
Confidence 643 245566666667764
No 24
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.2e-40 Score=317.97 Aligned_cols=194 Identities=14% Similarity=0.176 Sum_probs=158.9
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++||+++|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 2 ~~l~~~~l~~~y~~~-~v-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~---- 66 (362)
T 2it1_A 2 VEIKLENIVKKFGNF-TA-----LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK-----PTSGKIYFDEKD---- 66 (362)
T ss_dssp CCEEEEEEEEESSSS-EE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEE----
T ss_pred cEEEEEeEEEEECCE-EE-----EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-----CCceEEEECCEE----
Confidence 469999999999653 34 999999999999999999999999999999999999 999999999986
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVA 228 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a 228 (317)
+...+.. ++ .|||+||++.+|+ .+||++|+.++..... ......+++.+++
T Consensus 67 ------------------i~~~~~~--~r-------~ig~v~Q~~~l~~-~ltv~eni~~~~~~~~~~~~~~~~~v~~~l 118 (362)
T 2it1_A 67 ------------------VTELPPK--DR-------NVGLVFQNWALYP-HMTVYKNIAFPLELRKAPREEIDKKVREVA 118 (362)
T ss_dssp ------------------CTTSCGG--GT-------TEEEECTTCCCCT-TSCHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ------------------CCcCCHh--HC-------cEEEEecCcccCC-CCCHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3333332 12 3999999987664 6899999998653222 2233456778899
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++... .+.++ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 119 ~~~~L~~~--~~r~~---------~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv 187 (362)
T 2it1_A 119 KMLHIDKL--LNRYP---------WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITT 187 (362)
T ss_dssp HHTTCTTC--TTCCG---------GGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHcCCchH--hhCCh---------hhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 99998432 22344 7999999999999999999999999999999 9999999999999998653
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|||
T Consensus 188 i~vTHd~~~a~~~adri 204 (362)
T 2it1_A 188 VYVTHDQAEALAMADRI 204 (362)
T ss_dssp EEEESCHHHHHHHCSEE
T ss_pred EEECCCHHHHHHhCCEE
Confidence 567777777777764
No 25
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.6e-40 Score=305.21 Aligned_cols=194 Identities=15% Similarity=0.144 Sum_probs=155.2
Q ss_pred ceEEEeEEEEcC-CC---CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccC
Q 021147 71 LTDAKNKILSYT-PG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 71 ~I~~~nls~~y~-~~---~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~ 146 (317)
+|+++||+++|+ +. ..+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~v-----l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~- 70 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKA-----LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE-----PTSGDVLYDGER- 70 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEE-----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEE-
T ss_pred EEEEEEEEEEecCCCccccce-----eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEECCEE-
Confidence 699999999996 22 234 999999999999999999999999999999999999 999999999976
Q ss_pred ceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 226 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~ 226 (317)
+.. ..++ +.|||+||++..+...+||.+|+.++...........+++.+
T Consensus 71 ---------------------~~~---~~~~-------~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~ 119 (266)
T 2yz2_A 71 ---------------------KKG---YEIR-------RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKK 119 (266)
T ss_dssp ---------------------CCH---HHHG-------GGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHH
T ss_pred ---------------------Cch---HHhh-------hhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 221 1222 349999998632223579999998864221111223456778
Q ss_pred HHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 227 VATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 227 ~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
+++.+++. ... +... .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 120 ~l~~~gl~~~~~~---~~~~--------~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g 188 (266)
T 2yz2_A 120 AMEFVGLDFDSFK---DRVP--------FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLG 188 (266)
T ss_dssp HHHHTTCCHHHHT---TCCG--------GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCcCCcccc---cCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcC
Confidence 89999975 332 2333 7999999999999999999999999999999 9999999999999998643
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|||
T Consensus 189 ~tii~vtHd~~~~~~~~d~v 208 (266)
T 2yz2_A 189 KTVILISHDIETVINHVDRV 208 (266)
T ss_dssp CEEEEECSCCTTTGGGCSEE
T ss_pred CEEEEEeCCHHHHHHhCCEE
Confidence 677888888888874
No 26
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=2e-40 Score=318.04 Aligned_cols=194 Identities=15% Similarity=0.185 Sum_probs=158.1
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++||+++|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 2 ~~l~~~~l~~~y~~~-~v-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~---- 66 (359)
T 2yyz_A 2 PSIRVVNLKKYFGKV-KA-----VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK-----PTSGEIYFDDVL---- 66 (359)
T ss_dssp CCEEEEEEEEEETTE-EE-----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEE----
T ss_pred cEEEEEEEEEEECCE-EE-----EeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC-----CCccEEEECCEE----
Confidence 469999999999653 34 999999999999999999999999999999999999 999999999986
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC-hHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS-DVEKQYNQIVA 228 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~a 228 (317)
+...+.. ++ .|||+||++.+|+ .+||++|+.|+....... ....+++.+++
T Consensus 67 ------------------i~~~~~~--~r-------~ig~v~Q~~~l~~-~ltv~eni~~~~~~~~~~~~~~~~~v~~~l 118 (359)
T 2yyz_A 67 ------------------VNDIPPK--YR-------EVGMVFQNYALYP-HMTVFENIAFPLRARRISKDEVEKRVVEIA 118 (359)
T ss_dssp ------------------CTTSCGG--GT-------TEEEECSSCCCCT-TSCHHHHHHGGGSSSCSHHHHTTHHHHHHH
T ss_pred ------------------CCCCChh--hC-------cEEEEecCcccCC-CCCHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3333332 22 3999999987664 689999999875332211 22245678899
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++... .+.++ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 119 ~~~~L~~~--~~r~~---------~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv 187 (359)
T 2yyz_A 119 RKLLIDNL--LDRKP---------TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITS 187 (359)
T ss_dssp HHTTCGGG--TTSCG---------GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred HHcCCchH--hcCCh---------hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 99998422 22344 6999999999999999999999999999999 9999999999999998653
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|+...+..++|||
T Consensus 188 i~vTHd~~~~~~~adri 204 (359)
T 2yyz_A 188 VYVTHDQAEAMTMASRI 204 (359)
T ss_dssp EEEESCHHHHHHHCSEE
T ss_pred EEEcCCHHHHHHhCCEE
Confidence 567777777777764
No 27
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=3e-40 Score=315.59 Aligned_cols=190 Identities=15% Similarity=0.178 Sum_probs=156.1
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||+++|++. + |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 ml~~~~l~~~y~~~--~-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~~~g~~----- 63 (348)
T 3d31_A 1 MIEIESLSRKWKNF--S-----LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV-----PDSGRILLDGKD----- 63 (348)
T ss_dssp CEEEEEEEEECSSC--E-----EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC-----CSEEEEEETTEE-----
T ss_pred CEEEEEEEEEECCE--E-----EeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC-----CCCcEEEECCEE-----
Confidence 58999999999654 4 999999999999999999999999999999999999 999999999986
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+...+. .++. |||+||++.+|+ .+||++|+.++......... +++.++++.
T Consensus 64 -----------------i~~~~~--~~r~-------ig~v~Q~~~l~~-~ltv~enl~~~~~~~~~~~~--~~v~~~l~~ 114 (348)
T 3d31_A 64 -----------------VTDLSP--EKHD-------IAFVYQNYSLFP-HMNVKKNLEFGMRMKKIKDP--KRVLDTARD 114 (348)
T ss_dssp -----------------CTTSCH--HHHT-------CEEECTTCCCCT-TSCHHHHHHHHHHHHCCCCH--HHHHHHHHH
T ss_pred -----------------CCCCch--hhCc-------EEEEecCcccCC-CCCHHHHHHHHHHHcCCCHH--HHHHHHHHH
Confidence 333332 2333 999999987654 68999999986432111111 667889999
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------- 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------- 302 (317)
+++... .+.++ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 115 ~~L~~~--~~~~~---------~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~ 183 (348)
T 3d31_A 115 LKIEHL--LDRNP---------LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLH 183 (348)
T ss_dssp TTCTTT--TTSCG---------GGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred cCCchH--hcCCh---------hhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 998422 22333 7999999999999999999999999999999 9999999999999998653
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|+...+..++|||
T Consensus 184 vTHd~~~~~~~adri 198 (348)
T 3d31_A 184 ITHDQTEARIMADRI 198 (348)
T ss_dssp EESCHHHHHHHCSEE
T ss_pred EeCCHHHHHHhCCEE
Confidence 467777777777764
No 28
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.7e-40 Score=316.54 Aligned_cols=195 Identities=13% Similarity=0.134 Sum_probs=159.4
Q ss_pred CCceEEEeEEEEc-CCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 69 GSLTDAKNKILSY-TPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 69 ~~~I~~~nls~~y-~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
.++|+++||+++| ++. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 12 ~~~l~~~~l~~~y~g~~-~v-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~-- 78 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGA-RS-----VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER-----PTKGDVWIGGKR-- 78 (355)
T ss_dssp CEEEEEEEEEECCTTST-TC-----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEE--
T ss_pred CceEEEEEEEEEEcCCC-EE-----EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEECCEE--
Confidence 3579999999999 543 34 999999999999999999999999999999999999 999999999986
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQI 226 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~ 226 (317)
+...+.. ++ .|||+||++.+|+ .+||++|+.|+..... ......+++.+
T Consensus 79 --------------------i~~~~~~--~r-------~ig~v~Q~~~l~~-~ltv~eni~~~l~~~~~~~~~~~~~v~~ 128 (355)
T 1z47_A 79 --------------------VTDLPPQ--KR-------NVGLVFQNYALFQ-HMTVYDNVSFGLREKRVPKDEMDARVRE 128 (355)
T ss_dssp --------------------CTTCCGG--GS-------SEEEECGGGCCCT-TSCHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred --------------------CCcCChh--hC-------cEEEEecCcccCC-CCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3333221 22 3999999987654 6899999998653322 22334567888
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++... .+.++ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 129 ~l~~~gL~~~--~~r~~---------~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ 197 (355)
T 1z47_A 129 LLRFMRLESY--ANRFP---------HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGV 197 (355)
T ss_dssp HHHHTTCGGG--TTSCG---------GGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHcCChhH--hcCCc---------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 9999998422 22344 7999999999999999999999999999999 9999999999999998653
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|+...+..++|||
T Consensus 198 tvi~vTHd~~~a~~~adri 216 (355)
T 1z47_A 198 TSVFVTHDQEEALEVADRV 216 (355)
T ss_dssp EEEEECSCHHHHHHHCSEE
T ss_pred EEEEECCCHHHHHHhCCEE
Confidence 567777777778774
No 29
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.1e-41 Score=308.48 Aligned_cols=199 Identities=15% Similarity=0.192 Sum_probs=155.7
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||+|+|++...+ |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 ml~~~~l~~~y~~~~~v-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~----- 65 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQI-----LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-----PTAGEITIDGQP----- 65 (243)
T ss_dssp CEEEEEEEECSSSSSCS-----EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC-----CSBSCEEETTEE-----
T ss_pred CEEEEEEEEEeCCCCce-----EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEE-----
Confidence 58999999999533334 999999999999999999999999999999999999 999999999986
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+...+...++++ |||+||++.+|. .||++|+.++... .. ..+++.++++.
T Consensus 66 -----------------~~~~~~~~~~~~-------i~~v~q~~~l~~--~tv~enl~~~~~~-~~---~~~~~~~~l~~ 115 (243)
T 1mv5_A 66 -----------------IDNISLENWRSQ-------IGFVSQDSAIMA--GTIRENLTYGLEG-DY---TDEDLWQVLDL 115 (243)
T ss_dssp -----------------STTTSCSCCTTT-------CCEECCSSCCCC--EEHHHHTTSCTTS-CS---CHHHHHHHHHH
T ss_pred -----------------hhhCCHHHHHhh-------EEEEcCCCcccc--ccHHHHHhhhccC-CC---CHHHHHHHHHH
Confidence 333332223333 999999998775 4999999875211 11 13446778888
Q ss_pred cCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 231 FNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 231 ~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+++. ...++.++.+.+...+ .+||||||||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 116 ~~l~~~~~~~~~gl~~~~~~~~--~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~ 193 (243)
T 1mv5_A 116 AFARSFVENMPDQLNTEVGERG--VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLV 193 (243)
T ss_dssp HTCTTTTTSSTTGGGCEESTTS--BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEE
T ss_pred hChHHHHHhCccchhchhccCc--CcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8874 2223445555555554 7999999999999999999999999999999 9999999999999987521
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|++..+. .+|||
T Consensus 194 vtH~~~~~~-~~d~v 207 (243)
T 1mv5_A 194 IAHRLSTIV-DADKI 207 (243)
T ss_dssp ECCSHHHHH-HCSEE
T ss_pred EeCChHHHH-hCCEE
Confidence 456666554 36654
No 30
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=4.7e-40 Score=302.59 Aligned_cols=199 Identities=18% Similarity=0.217 Sum_probs=157.2
Q ss_pred CCceEEEeEEEEcCCC--CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccC
Q 021147 69 GSLTDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~--~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~ 146 (317)
..+|+++||+|+|++. ..+ |++|||+|++|++++|+||||||||||+|+|+|+++ | +|+|.++|++
T Consensus 15 ~~~l~i~~l~~~y~~~~~~~v-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~-~G~I~i~g~~- 82 (260)
T 2ghi_A 15 GVNIEFSDVNFSYPKQTNHRT-----LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-----A-EGDIKIGGKN- 82 (260)
T ss_dssp CCCEEEEEEEECCTTCCSSCS-----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----C-EEEEEETTEE-
T ss_pred CCeEEEEEEEEEeCCCCcCce-----eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC-----C-CeEEEECCEE-
Confidence 3579999999999753 233 999999999999999999999999999999999998 8 7999999986
Q ss_pred ceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 226 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~ 226 (317)
+...+...+++. |||+||++.+|. .||++|+.++... . ..+++.+
T Consensus 83 ---------------------i~~~~~~~~~~~-------i~~v~Q~~~l~~--~tv~enl~~~~~~--~---~~~~~~~ 127 (260)
T 2ghi_A 83 ---------------------VNKYNRNSIRSI-------IGIVPQDTILFN--ETIKYNILYGKLD--A---TDEEVIK 127 (260)
T ss_dssp ---------------------GGGBCHHHHHTT-------EEEECSSCCCCS--EEHHHHHHTTCTT--C---CHHHHHH
T ss_pred ---------------------hhhcCHHHHhcc-------EEEEcCCCcccc--cCHHHHHhccCCC--C---CHHHHHH
Confidence 444554445444 999999998775 4999999875321 1 1234667
Q ss_pred HHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 227 VATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 227 ~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
+++.+++.. ..+++++.+.+...+ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 128 ~l~~~~l~~~~~~l~~~~~~~~~~~~--~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~ 205 (260)
T 2ghi_A 128 ATKSAQLYDFIEALPKKWDTIVGNKG--MKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNR 205 (260)
T ss_dssp HHHHTTCHHHHHTSTTGGGCEESSSS--BCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCCHHHHHhccccccccccCCc--CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCC
Confidence 777777631 124445555554444 7999999999999999999999999999999 9999999999999987531
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+.. +|||
T Consensus 206 tviivtH~~~~~~~-~d~i 223 (260)
T 2ghi_A 206 TLIIIAHRLSTISS-AESI 223 (260)
T ss_dssp EEEEECSSGGGSTT-CSEE
T ss_pred EEEEEcCCHHHHHh-CCEE
Confidence 5666666653 6764
No 31
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.3e-40 Score=296.57 Aligned_cols=189 Identities=19% Similarity=0.200 Sum_probs=154.8
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
..+|+++||+++|++ .+ |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 8 ~~~l~~~~ls~~y~~--~i-----l~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~--- 72 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK--PV-----LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-----PLKGEIIYNGVP--- 72 (214)
T ss_dssp -CEEEEEEEEEESSS--EE-----EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEE---
T ss_pred CceEEEEEEEEEeCC--eE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEE---
Confidence 358999999999975 44 999999999999999999999999999999999999 999999999976
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
+. .++ +.|+|+||++.++ ..+||.+|+.++......... .+++.+++
T Consensus 73 -------------------~~-----~~~-------~~i~~v~q~~~~~-~~~tv~enl~~~~~~~~~~~~-~~~~~~~l 119 (214)
T 1sgw_A 73 -------------------IT-----KVK-------GKIFFLPEEIIVP-RKISVEDYLKAVASLYGVKVN-KNEIMDAL 119 (214)
T ss_dssp -------------------GG-----GGG-------GGEEEECSSCCCC-TTSBHHHHHHHHHHHTTCCCC-HHHHHHHH
T ss_pred -------------------hh-----hhc-------CcEEEEeCCCcCC-CCCCHHHHHHHHHHhcCCchH-HHHHHHHH
Confidence 32 122 2399999998765 457999999876422111112 45677889
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++.. . +... .+||||||||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 120 ~~~gl~~--~--~~~~--------~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tii 187 (214)
T 1sgw_A 120 ESVEVLD--L--KKKL--------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 187 (214)
T ss_dssp HHTTCCC--T--TSBG--------GGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEE
T ss_pred HHcCCCc--C--CCCh--------hhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 9988742 1 2333 7999999999999999999999999999999 9999999999999998643
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
+.|++..+..++|+|
T Consensus 188 ivtHd~~~~~~~~d~v 203 (214)
T 1sgw_A 188 ISSREELSYCDVNENL 203 (214)
T ss_dssp EEESSCCTTSSEEEEG
T ss_pred EEeCCHHHHHHhCCEE
Confidence 577888888888764
No 32
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3e-40 Score=360.65 Aligned_cols=237 Identities=16% Similarity=0.174 Sum_probs=199.3
Q ss_pred CCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc---------CCCCceEEEeEEEEcCCCC--ccccccCceeeeeEe
Q 021147 32 GDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT---------RIGSLTDAKNKILSYTPGA--WIENVGGMTLSDYDV 100 (317)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~I~~~nls~~y~~~~--~~~~~~~L~~isl~I 100 (317)
.+.......|..+..+..+..|+.++++.+++... ...+.|+++||+|+|++.. .+ |+||||+|
T Consensus 339 ~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~v-----L~~isl~i 413 (1284)
T 3g5u_A 339 FSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQI-----LKGLNLKV 413 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCS-----EEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcc-----eecceEEE
Confidence 45566677888899999999999999987654321 1234699999999997532 33 99999999
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHH
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRM 180 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~ 180 (317)
++||++|||||||||||||+++|.|+++ |++|+|.+||++ ++.++...+|++
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~~-----~~~G~i~i~g~~----------------------i~~~~~~~~r~~- 465 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLYD-----PLDGMVSIDGQD----------------------IRTINVRYLREI- 465 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSSC-----CSEEEEEETTEE----------------------GGGSCHHHHHHH-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEE----------------------HHhCCHHHHHhh-
Confidence 9999999999999999999999999999 999999999987 777888888887
Q ss_pred HHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHH
Q 021147 181 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDR 258 (317)
Q Consensus 181 ~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG 258 (317)
||||||++.+|+. ||+||+.++.... ..+++.++++.++++ +..+++|+.+.+++.| .+||||
T Consensus 466 ------i~~v~Q~~~l~~~--ti~eNi~~g~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g--~~LSgG 530 (1284)
T 3g5u_A 466 ------IGVVSQEPVLFAT--TIAENIRYGREDV-----TMDEIEKAVKEANAYDFIMKLPHQFDTLVGERG--AQLSGG 530 (1284)
T ss_dssp ------EEEECSSCCCCSS--CHHHHHHHHCSSC-----CHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSS--CSSCHH
T ss_pred ------eEEEcCCCccCCc--cHHHHHhcCCCCC-----CHHHHHHHHHHhCcHHHHHhccccccccccCCC--CccCHH
Confidence 9999999998865 9999999875422 234577888888874 4457889999999998 899999
Q ss_pred HHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 259 ARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 259 ~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
||||++||||++++|+++||||||+ ||+.++..+.+.++++.+. ..|+++.+.. +|||
T Consensus 531 q~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i 594 (1284)
T 3g5u_A 531 QKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVI 594 (1284)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEE
Confidence 9999999999999999999999999 9999999999999886532 4567776655 6764
No 33
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.5e-40 Score=318.45 Aligned_cols=195 Identities=14% Similarity=0.145 Sum_probs=158.5
Q ss_pred CceEEEeEEEEcCCCCc-cccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 70 SLTDAKNKILSYTPGAW-IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~-~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.+|+++||+++|++... + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 2 ~~l~i~~l~~~y~~~~~~v-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~--- 68 (353)
T 1oxx_K 2 VRIIVKNVSKVFKKGKVVA-----LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV-----PSTGELYFDDRL--- 68 (353)
T ss_dssp CCEEEEEEEEEEGGGTEEE-----EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC-----CSEEEEEETTEE---
T ss_pred cEEEEEeEEEEECCEeeee-----EeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEE---
Confidence 47999999999965321 4 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeecc-----CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC-hHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRR-----SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS-DVEKQ 222 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~-----~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~-~~~~~ 222 (317)
+.. .+. .++ .|||+||++.+|+ .+||++|+.++....... ....+
T Consensus 69 -------------------i~~~~~~~~~~--~~r-------~ig~v~Q~~~l~~-~ltv~eni~~~~~~~~~~~~~~~~ 119 (353)
T 1oxx_K 69 -------------------VASNGKLIVPP--EDR-------KIGMVFQTWALYP-NLTAFENIAFPLTNMKMSKEEIRK 119 (353)
T ss_dssp -------------------EEETTEESSCG--GGS-------CEEEEETTSCCCT-TSCHHHHHHGGGTTSSCCHHHHHH
T ss_pred -------------------CcccccccCCh--hhC-------CEEEEeCCCccCC-CCCHHHHHHHHHHHcCCCHHHHHH
Confidence 222 222 122 3999999987654 689999999875432222 33456
Q ss_pred HHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 223 ~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
++.++++.+++... .+.++ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 120 ~v~~~l~~~~L~~~--~~~~~---------~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 188 (353)
T 1oxx_K 120 RVEEVAKILDIHHV--LNHFP---------RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188 (353)
T ss_dssp HHHHHHHHTTCGGG--TTSCG---------GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchH--hcCCh---------hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 77889999998422 22344 7999999999999999999999999999999 999999999999999865
Q ss_pred h-------cCCCcchhhcccCCC
Q 021147 302 H-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~-------~~~~~~~~~~~~~~~ 317 (317)
. ..|++..+..++|||
T Consensus 189 ~~g~tvi~vTHd~~~~~~~adri 211 (353)
T 1oxx_K 189 RLGVTLLVVSHDPADIFAIADRV 211 (353)
T ss_dssp HHCCEEEEEESCHHHHHHHCSEE
T ss_pred hcCCEEEEEeCCHHHHHHhCCEE
Confidence 3 567777777777774
No 34
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3.9e-40 Score=317.49 Aligned_cols=194 Identities=16% Similarity=0.163 Sum_probs=158.2
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++||+++|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 2 ~~l~~~~l~~~y~~~-~v-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~---- 66 (372)
T 1g29_1 2 AGVRLVDVWKVFGEV-TA-----VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE-----PSRGQIYIGDKL---- 66 (372)
T ss_dssp EEEEEEEEEEEETTE-EE-----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEE----
T ss_pred CEEEEEeEEEEECCE-EE-----EeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC-----CCccEEEECCEE----
Confidence 469999999999653 34 999999999999999999999999999999999999 999999999986
Q ss_pred eEecccCCCCcccccceeecc------CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRR------SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQ 222 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~------~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~ 222 (317)
+.. .+.. ++ .||||||++.+|+ .+||++|+.|+..... ......+
T Consensus 67 ------------------~~~~~~~~~~~~~--~r-------~ig~v~Q~~~l~~-~ltv~eni~~~~~~~~~~~~~~~~ 118 (372)
T 1g29_1 67 ------------------VADPEKGIFVPPK--DR-------DIAMVFQSYALYP-HMTVYDNIAFPLKLRKVPRQEIDQ 118 (372)
T ss_dssp ------------------EEEGGGTEECCGG--GS-------SEEEECSCCCCCT-TSCHHHHHHHHHHHTTCCHHHHHH
T ss_pred ------------------CccccccccCCHh--HC-------CEEEEeCCCccCC-CCCHHHHHHHHHHHcCCCHHHHHH
Confidence 222 2221 22 3999999987654 6899999998753322 2233456
Q ss_pred HHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 223 ~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
++.++++.+++... .+.++ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 119 ~v~~~l~~~~L~~~--~~r~~---------~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 187 (372)
T 1g29_1 119 RVREVAELLGLTEL--LNRKP---------RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR 187 (372)
T ss_dssp HHHHHHHHHTCGGG--TTCCG---------GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCchH--hcCCc---------ccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHH
Confidence 67889999998422 22344 7999999999999999999999999999999 999999999999999865
Q ss_pred h-------cCCCcchhhcccCCC
Q 021147 302 H-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~-------~~~~~~~~~~~~~~~ 317 (317)
. ..|++..+..++|||
T Consensus 188 ~~g~tvi~vTHd~~~a~~~adri 210 (372)
T 1g29_1 188 QLGVTTIYVTHDQVEAMTMGDRI 210 (372)
T ss_dssp HHTCEEEEEESCHHHHHHHCSEE
T ss_pred hcCCEEEEECCCHHHHHHhCCEE
Confidence 3 567777777777764
No 35
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=3.3e-40 Score=305.43 Aligned_cols=198 Identities=16% Similarity=0.163 Sum_probs=148.8
Q ss_pred CCceEEEeEEEEcCCC--CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccC
Q 021147 69 GSLTDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~--~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~ 146 (317)
.++|+++||+|+|++. ..+ |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~v-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~- 82 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQV-----LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ-----PTGGKVLLDGEP- 82 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCC-----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEE-
T ss_pred CceEEEEEEEEEeCCCCCcee-----eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCCEEEECCEE-
Confidence 3579999999999751 334 999999999999999999999999999999999999 999999999986
Q ss_pred ceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHH-----
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK----- 221 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~----- 221 (317)
+...+...+++. |||+||++.+|. .||++|+.++...........
T Consensus 83 ---------------------i~~~~~~~~~~~-------i~~v~Q~~~l~~--~tv~enl~~~~~~~~~~~~~~~~~~~ 132 (271)
T 2ixe_A 83 ---------------------LVQYDHHYLHTQ-------VAAVGQEPLLFG--RSFRENIAYGLTRTPTMEEITAVAME 132 (271)
T ss_dssp ---------------------GGGBCHHHHHHH-------EEEECSSCCCCS--SBHHHHHHTTCSSCCCHHHHHHHHHH
T ss_pred ---------------------cccCCHHHHhcc-------EEEEecCCcccc--ccHHHHHhhhcccCChHHHHHHHHHH
Confidence 444555555555 999999998775 499999998643211101100
Q ss_pred HHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 222 QYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 222 ~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
..+.++++.+. .+....+.... .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.
T Consensus 133 ~~~~~~l~~l~-------~gl~~~~~~~~--~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 203 (271)
T 2ixe_A 133 SGAHDFISGFP-------QGYDTEVGETG--NQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESP 203 (271)
T ss_dssp HTCHHHHHHST-------TGGGSBCCGGG--TTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCT
T ss_pred HhHHHHHHhhh-------cchhhhhcCCc--CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 11122333331 11111111111 7999999999999999999999999999999 99999999999999875
Q ss_pred Hh-------cCCCcchhhcccCCC
Q 021147 301 EH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 301 ~~-------~~~~~~~~~~~~~~~ 317 (317)
+. ..|++..+.. +|||
T Consensus 204 ~~~g~tviivtHd~~~~~~-~d~v 226 (271)
T 2ixe_A 204 EWASRTVLLITQQLSLAER-AHHI 226 (271)
T ss_dssp TTTTSEEEEECSCHHHHTT-CSEE
T ss_pred hhcCCEEEEEeCCHHHHHh-CCEE
Confidence 31 4566666654 6664
No 36
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=3.2e-40 Score=317.96 Aligned_cols=195 Identities=13% Similarity=0.133 Sum_probs=154.6
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|.+|+++||+++|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 9 M~~l~~~~l~~~y~~~-~v-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~--- 74 (372)
T 1v43_A 9 MVEVKLENLTKRFGNF-TA-----VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-----PTEGRIYFGDRD--- 74 (372)
T ss_dssp CCCEEEEEEEEEETTE-EE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEE---
T ss_pred eeeEEEEEEEEEECCE-EE-----EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCceEEEECCEE---
Confidence 4579999999999653 34 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC-hHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS-DVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~ 227 (317)
+...+.. ++ .||||||++.+|+ .+||++|+.|+....... ....+++.++
T Consensus 75 -------------------i~~~~~~--~r-------~ig~v~Q~~~l~~-~ltv~eni~~~~~~~~~~~~~~~~~v~~~ 125 (372)
T 1v43_A 75 -------------------VTYLPPK--DR-------NISMVFQSYAVWP-HMTVYENIAFPLKIKKFPKDEIDKRVRWA 125 (372)
T ss_dssp -------------------CTTSCGG--GG-------TEEEEEC-------CCCHHHHHHTTCC--CCCHHHHHHHHHHH
T ss_pred -------------------CCCCChh--hC-------cEEEEecCcccCC-CCCHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3333332 22 3999999987664 689999999864322222 2345667889
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++... .+.++ .+||||||||++|||||+.+|+++|||||++ ||+.++..+.+.|+++.+.
T Consensus 126 l~~~~L~~~--~~r~~---------~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t 194 (372)
T 1v43_A 126 AELLQIEEL--LNRYP---------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 194 (372)
T ss_dssp HHHTTCGGG--TTSCT---------TTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHcCChhH--hcCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCE
Confidence 999998422 22344 6999999999999999999999999999999 9999999999999998653
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|||
T Consensus 195 vi~vTHd~~~a~~~adri 212 (372)
T 1v43_A 195 TIYVTHDQVEAMTMGDRI 212 (372)
T ss_dssp EEEEESCHHHHHHHCSEE
T ss_pred EEEEeCCHHHHHHhCCEE
Confidence 567777777777774
No 37
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=8.1e-40 Score=299.26 Aligned_cols=197 Identities=14% Similarity=0.106 Sum_probs=150.3
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhc--ccCCCCCCcCcEEEECcccCc
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl--~~p~~~~p~~G~I~i~g~~~~ 147 (317)
.+|+++||+++|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+ ++ |++|+|.++|++
T Consensus 2 ~~l~~~~l~~~y~~~-~v-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~-----p~~G~I~~~g~~-- 68 (250)
T 2d2e_A 2 SQLEIRDLWASIDGE-TI-----LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT-----VERGEILLDGEN-- 68 (250)
T ss_dssp CEEEEEEEEEEETTE-EE-----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE-----EEEEEEEETTEE--
T ss_pred ceEEEEeEEEEECCE-EE-----EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCceEEEECCEE--
Confidence 479999999999653 34 9999999999999999999999999999999999 78 999999999986
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc--cCC--CChHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS--MEG--DSDVEKQY 223 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~--~~~--~~~~~~~~ 223 (317)
+...+....++ ..++|++|++.+++ .+|+.+|+.+... ... ......++
T Consensus 69 --------------------~~~~~~~~~~~------~~i~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 121 (250)
T 2d2e_A 69 --------------------ILELSPDERAR------KGLFLAFQYPVEVP-GVTIANFLRLALQAKLGREVGVAEFWTK 121 (250)
T ss_dssp --------------------CTTSCHHHHHH------TTBCCCCCCCC-CC-SCBHHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred --------------------CCCCCHHHHHh------CcEEEeccCCcccc-CCCHHHHHHHHHHhhccccCCHHHHHHH
Confidence 44444333221 23899999987654 5799999987531 111 11223456
Q ss_pred HHHHHHHcCCC-cccCCCCCCEEEEeccchhc-CcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 224 NQIVATTFNCP-YLSFRDDKPVVVVTHGDLLS-LTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 224 ~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~-LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+.++++.++++ ... +..+ .+ ||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.
T Consensus 122 ~~~~l~~~gl~~~~~---~~~~--------~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 190 (250)
T 2d2e_A 122 VKKALELLDWDESYL---SRYL--------NEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMR 190 (250)
T ss_dssp HHHHHHHHTCCGGGG---GSBT--------TCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCChhHh---cCCc--------ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 77888998873 221 2222 56 99999999999999999999999999999 99999999999999985
Q ss_pred Hh------cCCCcchhhcc-cCCC
Q 021147 301 EH------ADRNLSCKSCA-RNKV 317 (317)
Q Consensus 301 ~~------~~~~~~~~~~~-~~~~ 317 (317)
+. ..|++..+..+ +|||
T Consensus 191 ~~g~tvi~vtHd~~~~~~~~~d~v 214 (250)
T 2d2e_A 191 GPNFGALVITHYQRILNYIQPDKV 214 (250)
T ss_dssp STTCEEEEECSSSGGGGTSCCSEE
T ss_pred hcCCEEEEEecCHHHHHHhcCCEE
Confidence 32 56777777766 4764
No 38
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=7.4e-40 Score=298.10 Aligned_cols=189 Identities=20% Similarity=0.229 Sum_probs=152.0
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||+++|++ . |+||||+|++ |+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 ml~~~~l~~~y~~---~-----l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~----- 61 (240)
T 2onk_A 1 MFLKVRAEKRLGN---F-----RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK-----PDRGEVRLNGAD----- 61 (240)
T ss_dssp CCEEEEEEEEETT---E-----EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEE-----
T ss_pred CEEEEEEEEEeCC---E-----EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE-----
Confidence 5899999999953 3 9999999999 9999999999999999999999999 999999999986
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+..... .+ +.|||+||++.+++ .+||++|+.++..... .....+++.++++.
T Consensus 62 -----------------~~~~~~--~~-------~~i~~v~q~~~l~~-~ltv~enl~~~~~~~~-~~~~~~~~~~~l~~ 113 (240)
T 2onk_A 62 -----------------ITPLPP--ER-------RGIGFVPQDYALFP-HLSVYRNIAYGLRNVE-RVERDRRVREMAEK 113 (240)
T ss_dssp -----------------CTTSCT--TT-------SCCBCCCSSCCCCT-TSCHHHHHHTTCTTSC-HHHHHHHHHHHHHT
T ss_pred -----------------CCcCch--hh-------CcEEEEcCCCccCC-CCcHHHHHHHHHHHcC-CchHHHHHHHHHHH
Confidence 222111 12 23999999987554 6799999987542211 12224567788888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------- 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------- 302 (317)
+++... . +... .+||||||||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 114 ~~l~~~--~-~~~~--------~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~ 182 (240)
T 2onk_A 114 LGIAHL--L-DRKP--------ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH 182 (240)
T ss_dssp TTCTTT--T-TCCG--------GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred cCCHHH--h-cCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 887422 1 2233 7999999999999999999999999999999 9999999999999998643
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 183 vtHd~~~~~~~~d~i 197 (240)
T 2onk_A 183 VTHDLIEAAMLADEV 197 (240)
T ss_dssp EESCHHHHHHHCSEE
T ss_pred EeCCHHHHHHhCCEE
Confidence 567777777777764
No 39
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=5.8e-39 Score=293.73 Aligned_cols=186 Identities=14% Similarity=0.129 Sum_probs=154.7
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||+++ .+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |+ |+|.++|++
T Consensus 4 ~l~~~~l~~~-----~v-----l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~-G~i~~~g~~----- 62 (249)
T 2qi9_C 4 VMQLQDVAES-----TR-----LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-----GK-GSIQFAGQP----- 62 (249)
T ss_dssp EEEEEEEEET-----TT-----EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CE-EEEEETTEE-----
T ss_pred EEEEEceEEE-----EE-----EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CC-eEEEECCEE-----
Confidence 6999999986 23 999999999999999999999999999999999999 99 999999986
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+..++...+++. +||+||++.++ ..+||++|+.++..... . .+++.++++.
T Consensus 63 -----------------~~~~~~~~~~~~-------i~~v~q~~~~~-~~~tv~e~l~~~~~~~~--~--~~~~~~~l~~ 113 (249)
T 2qi9_C 63 -----------------LEAWSATKLALH-------RAYLSQQQTPP-FATPVWHYLTLHQHDKT--R--TELLNDVAGA 113 (249)
T ss_dssp -----------------GGGSCHHHHHHH-------EEEECSCCCCC-TTCBHHHHHHTTCSSTT--C--HHHHHHHHHH
T ss_pred -----------------CCcCCHHHHhce-------EEEECCCCccC-CCCcHHHHHHHhhccCC--c--HHHHHHHHHH
Confidence 445565556655 99999998755 35799999987632111 1 4567888999
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccc-------eeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPA-------KQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~-------ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
+++.... +... .+||||||||++|||||+.+|+ ++||||||+ ||+.++..+.+.|+++.+.
T Consensus 114 ~~l~~~~---~~~~--------~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~ 182 (249)
T 2qi9_C 114 LALDDKL---GRST--------NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ 182 (249)
T ss_dssp TTCGGGT---TSBG--------GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred cCChhHh---cCCh--------hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC
Confidence 9974222 2233 7999999999999999999999 999999999 9999999999999998643
Q ss_pred ------cCCCcchhhcccCCC
Q 021147 303 ------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ------~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|||
T Consensus 183 g~tviivtHd~~~~~~~~d~v 203 (249)
T 2qi9_C 183 GLAIVMSSHDLNHTLRHAHRA 203 (249)
T ss_dssp TCEEEEECSCHHHHHHHCSEE
T ss_pred CCEEEEEeCCHHHHHHhCCEE
Confidence 567777777777764
No 40
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.8e-38 Score=290.97 Aligned_cols=183 Identities=17% Similarity=0.214 Sum_probs=148.4
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||+++|+++..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+..
T Consensus 4 ~l~i~~l~~~y~~~~~v-----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~~------- 66 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFL-----FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR-----PIQGKIEVYQ------- 66 (253)
T ss_dssp EEEEEEEEEEETTTTEE-----EEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC-----CSEEEEEECS-------
T ss_pred eEEEeeEEEEeCCCCeE-----EEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEEec-------
Confidence 79999999999723344 999999999999999999999999999999999999 9999998211
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-c-C---CCChHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-M-E---GDSDVEKQYNQ 225 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~-~---~~~~~~~~~~~ 225 (317)
.|||+||++.++. .+||.+|+.++.. . . .......+++.
T Consensus 67 -----------------------------------~i~~v~q~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~ 110 (253)
T 2nq2_C 67 -----------------------------------SIGFVPQFFSSPF-AYSVLDIVLMGRSTHINTFAKPKSHDYQVAM 110 (253)
T ss_dssp -----------------------------------CEEEECSCCCCSS-CCBHHHHHHGGGGGGSCTTCCCCHHHHHHHH
T ss_pred -----------------------------------cEEEEcCCCccCC-CCCHHHHHHHhhhhhcccccCCCHHHHHHHH
Confidence 1888888876553 5699999988642 1 1 11233456678
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++++.+++.... +... .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 111 ~~l~~~~l~~~~---~~~~--------~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g 179 (253)
T 2nq2_C 111 QALDYLNLTHLA---KREF--------TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQN 179 (253)
T ss_dssp HHHHHTTCGGGT---TSBG--------GGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHcCChHHh---cCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 889999874222 2233 7999999999999999999999999999999 9999999999999998653
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
+.|++..+...+|||
T Consensus 180 ~tvi~vtHd~~~~~~~~d~v 199 (253)
T 2nq2_C 180 MTVVFTTHQPNQVVAIANKT 199 (253)
T ss_dssp CEEEEEESCHHHHHHHCSEE
T ss_pred CEEEEEecCHHHHHHhCCEE
Confidence 567777777777764
No 41
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.5e-38 Score=293.73 Aligned_cols=199 Identities=14% Similarity=0.084 Sum_probs=152.1
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhc--ccCCCCCCcCcEEEECcccC
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl--~~p~~~~p~~G~I~i~g~~~ 146 (317)
+++|+++||+++|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+ ++ |++|+|.++|++
T Consensus 18 ~~~l~~~~l~~~y~~~-~v-----l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~-----p~~G~I~~~g~~- 85 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDK-AI-----LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE-----VTGGTVEFKGKD- 85 (267)
T ss_dssp --CEEEEEEEEEETTE-EE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE-----EEEEEEEETTEE-
T ss_pred CceEEEEeEEEEECCE-EE-----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCCeEEEECCEE-
Confidence 4589999999999643 34 9999999999999999999999999999999999 56 899999999986
Q ss_pred ceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhh-c----cCC---CCh
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK-S----MEG---DSD 218 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~-~----~~~---~~~ 218 (317)
+...+....++ ..|+|++|++.+++ .+|+.+|+.+.. . ... ...
T Consensus 86 ---------------------i~~~~~~~~~~------~~i~~v~Q~~~l~~-~~tv~e~~~~~~~~~~~~~~~~~~~~~ 137 (267)
T 2zu0_C 86 ---------------------LLALSPEDRAG------EGIFMAFQYPVEIP-GVSNQFFLQTALNAVRSYRGQETLDRF 137 (267)
T ss_dssp ---------------------GGGSCHHHHHH------HTEEEECSSCCCCT-TCBHHHHHHHHHHHHHHGGGCCCCCHH
T ss_pred ---------------------CCcCCHHHHhh------CCEEEEccCccccc-cccHHHHHHHHHHhhhhhhccccCCHH
Confidence 44444433221 13999999987654 578999987642 1 111 112
Q ss_pred HHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchh-cCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHH
Q 021147 219 VEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLL-SLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDML 296 (317)
Q Consensus 219 ~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~-~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l 296 (317)
...+++.++++.+++... +. +... . +||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|
T Consensus 138 ~~~~~~~~~l~~~gl~~~-~~-~~~~--------~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l 207 (267)
T 2zu0_C 138 DFQDLMEEKIALLKMPED-LL-TRSV--------NVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGV 207 (267)
T ss_dssp HHHHHHHHHHHHTTCCTT-TT-TSBT--------TTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChh-Hh-cCCc--------ccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 234567788899887411 11 2222 3 599999999999999999999999999999 9999999999999
Q ss_pred HHHHHh------cCCCcchhhcc-cCCC
Q 021147 297 RYCLEH------ADRNLSCKSCA-RNKV 317 (317)
Q Consensus 297 ~~l~~~------~~~~~~~~~~~-~~~~ 317 (317)
+++.+. ..|++..+... +|||
T Consensus 208 ~~l~~~g~tviivtHd~~~~~~~~~d~v 235 (267)
T 2zu0_C 208 NSLRDGKRSFIIVTHYQRILDYIKPDYV 235 (267)
T ss_dssp HTTCCSSCEEEEECSSGGGGGTSCCSEE
T ss_pred HHHHhcCCEEEEEeeCHHHHHhhcCCEE
Confidence 887432 46677777665 6764
No 42
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-38 Score=308.65 Aligned_cols=199 Identities=17% Similarity=0.198 Sum_probs=159.5
Q ss_pred CCCceEEEeEEEEcCC-CCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccC
Q 021147 68 IGSLTDAKNKILSYTP-GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~-~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~ 146 (317)
..+.|+++||+|+|+. ...+ |+||||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|++
T Consensus 16 ~~~~i~~~~l~~~y~~~~~~~-----L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~------~~G~I~i~G~~- 83 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTEGGNAI-----LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN------TEGEIQIDGVS- 83 (390)
T ss_dssp SSCCEEEEEEEEESSSSSCCS-----EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE------EEEEEEESSCB-
T ss_pred CCCeEEEEEEEEEecCCCeEE-----eeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC------CCeEEEECCEE-
Confidence 3467999999999953 3333 999999999999999999999999999999999975 47999999987
Q ss_pred ceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 226 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~ 226 (317)
+..++...+++. ||||||++.+|+ +||++|+.+... ...+++.+
T Consensus 84 ---------------------i~~~~~~~~rr~-------ig~v~Q~~~lf~--~tv~enl~~~~~------~~~~~v~~ 127 (390)
T 3gd7_A 84 ---------------------WDSITLEQWRKA-------FGVIPQKVFIFS--GTFRKNLDPNAA------HSDQEIWK 127 (390)
T ss_dssp ---------------------TTSSCHHHHHHT-------EEEESCCCCCCS--EEHHHHHCTTCC------SCHHHHHH
T ss_pred ---------------------CCcCChHHHhCC-------EEEEcCCcccCc--cCHHHHhhhccc------cCHHHHHH
Confidence 556676666665 999999998886 599999974321 12345778
Q ss_pred HHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 227 VATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 227 ~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
+++.+++. ...++..+.+.+.+.+ ..||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++...
T Consensus 128 ~l~~~~L~~~~~~~p~~l~~~i~~~g--~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~ 205 (390)
T 3gd7_A 128 VADEVGLRSVIEQFPGKLDFVLVDGG--CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADC 205 (390)
T ss_dssp HHHHTTCHHHHTTSTTGGGCEECTTT--TTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTS
T ss_pred HHHHhCCHHHHhhccccccccccccc--ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCC
Confidence 89999984 2335556677777777 7899999999999999999999999999999 9999999999999875321
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+. .+|||
T Consensus 206 tvi~vtHd~e~~~-~aDri 223 (390)
T 3gd7_A 206 TVILCEARIEAML-ECDQF 223 (390)
T ss_dssp CEEEECSSSGGGT-TCSEE
T ss_pred EEEEEEcCHHHHH-hCCEE
Confidence 344444333 36654
No 43
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.6e-38 Score=288.60 Aligned_cols=185 Identities=15% Similarity=0.175 Sum_probs=138.5
Q ss_pred CceEEEeEEEEcCC-CCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 70 SLTDAKNKILSYTP-GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 70 ~~I~~~nls~~y~~-~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.+|+++||+++|++ ...+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 2 ~~l~~~~l~~~y~~~~~~v-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~---- 67 (237)
T 2cbz_A 2 NSITVRNATFTWARSDPPT-----LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-----KVEGHVAIKGS---- 67 (237)
T ss_dssp CCEEEEEEEEESCTTSCCS-----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE-----EEEEEEEECSC----
T ss_pred CeEEEEEEEEEeCCCCCce-----eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCE----
Confidence 47999999999974 2334 999999999999999999999999999999999999 99999998873
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
|||+||++.++ .+||++|+.++.... .. ...+++
T Consensus 68 --------------------------------------i~~v~Q~~~~~--~~tv~enl~~~~~~~--~~----~~~~~~ 101 (237)
T 2cbz_A 68 --------------------------------------VAYVPQQAWIQ--NDSLRENILFGCQLE--EP----YYRSVI 101 (237)
T ss_dssp --------------------------------------EEEECSSCCCC--SEEHHHHHHTTSCCC--TT----HHHHHH
T ss_pred --------------------------------------EEEEcCCCcCC--CcCHHHHhhCccccC--HH----HHHHHH
Confidence 78888887543 569999998764321 11 123344
Q ss_pred HHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHH---HHHH-
Q 021147 229 TTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLR---YCLE- 301 (317)
Q Consensus 229 ~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~---~l~~- 301 (317)
+.+++. ...++.++.+.+.... .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.+. ++.+
T Consensus 102 ~~~~l~~~~~~~~~~~~~~~~~~~--~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~ 179 (237)
T 2cbz_A 102 QACALLPDLEILPSGDRTEIGEKG--VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKN 179 (237)
T ss_dssp HHTTCHHHHTTSTTGGGSEESTTS--BCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTT
T ss_pred HHHhhHHHHHhccccccccccCCC--CCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCC
Confidence 444331 0112222222222222 7999999999999999999999999999999 99999999999884 3221
Q ss_pred ----hcCCCcchhhcccCCC
Q 021147 302 ----HADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ----~~~~~~~~~~~~~~~~ 317 (317)
...|++..+. .+|||
T Consensus 180 ~tviivtH~~~~~~-~~d~v 198 (237)
T 2cbz_A 180 KTRILVTHSMSYLP-QVDVI 198 (237)
T ss_dssp SEEEEECSCSTTGG-GSSEE
T ss_pred CEEEEEecChHHHH-hCCEE
Confidence 1456666654 46764
No 44
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=6.6e-39 Score=350.08 Aligned_cols=231 Identities=16% Similarity=0.170 Sum_probs=188.6
Q ss_pred hHHHHHHHHHHHHHHHHHHcccccccc---------CCCCceEEEeEEEEcCCCC--ccccccCceeeeeEecCCCEEEE
Q 021147 40 SWDSLVDQRRRDAVFREVLQSYDQLRT---------RIGSLTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLL 108 (317)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~I~~~nls~~y~~~~--~~~~~~~L~~isl~I~~Ge~vaI 108 (317)
.+..+.++..+..|+.++++.+++... ...+.|+++||+|+|++.. .+ |+||||+|++||++||
T Consensus 990 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~-----l~~vsl~i~~Ge~v~i 1064 (1284)
T 3g5u_A 990 FAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPV-----LQGLSLEVKKGQTLAL 1064 (1284)
T ss_dssp SSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCS-----BSSCCEEECSSSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCee-----ecceeEEEcCCCEEEE
Confidence 344455677888999999876654322 1234699999999997532 23 9999999999999999
Q ss_pred EcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhcc
Q 021147 109 IGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIG 188 (317)
Q Consensus 109 vG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig 188 (317)
+||||||||||+++|.|+++ |++|+|.+||++ ++.++.+.+|++ |+
T Consensus 1065 vG~sGsGKSTl~~~l~g~~~-----p~~G~I~i~g~~----------------------i~~~~~~~~r~~-------i~ 1110 (1284)
T 3g5u_A 1065 VGSSGCGKSTVVQLLERFYD-----PMAGSVFLDGKE----------------------IKQLNVQWLRAQ-------LG 1110 (1284)
T ss_dssp ECSSSTTHHHHHHHHTTSSC-----CSEEEEESSSSC----------------------TTSSCHHHHTTS-------CE
T ss_pred ECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCEE----------------------cccCCHHHHHhc-------eE
Confidence 99999999999999999999 999999999987 666777777666 99
Q ss_pred ccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhccc
Q 021147 189 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLG 266 (317)
Q Consensus 189 ~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~ia 266 (317)
||||++.+|. .||+||+.++...... ..+++.++++.++++ ...+++|+++.++++| .+||||||||++||
T Consensus 1111 ~v~Q~~~l~~--~ti~eNi~~~~~~~~~---~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G--~~LSgGq~Qrv~iA 1183 (1284)
T 3g5u_A 1111 IVSQEPILFD--CSIAENIAYGDNSRVV---SYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKG--TQLSGGQKQRIAIA 1183 (1284)
T ss_dssp EEESSCCCCS--SBHHHHHTCCCSSCCC---CHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTS--CSSCHHHHHHHHHH
T ss_pred EECCCCcccc--ccHHHHHhccCCCCCC---CHHHHHHHHHHhCcHHHHHhCccccccccCCCC--CccCHHHHHHHHHH
Confidence 9999998775 4999999986543221 233467778888874 4457889999999998 89999999999999
Q ss_pred ceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH-----hcCCCcchhhcccCCC
Q 021147 267 ELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE-----HADRNLSCKSCARNKV 317 (317)
Q Consensus 267 ral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~-----~~~~~~~~~~~~~~~~ 317 (317)
||++++|+++||||||+ ||+.+++.+++.++++.+ ...|+++.+.. +|||
T Consensus 1184 Ral~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~-~dri 1239 (1284)
T 3g5u_A 1184 RALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN-ADLI 1239 (1284)
T ss_dssp HHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGS-CSEE
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHc-CCEE
Confidence 99999999999999999 999999999999988643 14667777654 7774
No 45
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=4.3e-38 Score=284.29 Aligned_cols=185 Identities=15% Similarity=0.160 Sum_probs=138.0
Q ss_pred CceEEEeEEEEcCC-CCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 70 SLTDAKNKILSYTP-GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 70 ~~I~~~nls~~y~~-~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.+|+++||+++|++ ...+ |++|||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 5 ~~l~~~~l~~~y~~~~~~i-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~---- 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPV-----LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIKHSGR---- 70 (229)
T ss_dssp EEEEEEEEEECSSTTSCCS-----EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEECSC----
T ss_pred ceEEEEEEEEEeCCCCcee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCccEEEECCE----
Confidence 47999999999963 3334 999999999999999999999999999999999999 99999998773
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
|+|+||++.+++ .||++|+.++... .. .+..+++
T Consensus 71 --------------------------------------i~~v~q~~~~~~--~tv~enl~~~~~~---~~---~~~~~~~ 104 (229)
T 2pze_A 71 --------------------------------------ISFCSQFSWIMP--GTIKENIIFGVSY---DE---YRYRSVI 104 (229)
T ss_dssp --------------------------------------EEEECSSCCCCS--BCHHHHHHTTSCC---CH---HHHHHHH
T ss_pred --------------------------------------EEEEecCCcccC--CCHHHHhhccCCc---Ch---HHHHHHH
Confidence 888888887665 3999999875321 11 1233444
Q ss_pred HHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHH-HHHHH---
Q 021147 229 TTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDML-RYCLE--- 301 (317)
Q Consensus 229 ~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l-~~l~~--- 301 (317)
+.+++. ...++.+..+.+.+.+ .+||||||||++||||++.+|+++||||||+ ||+.++..+.+.+ +++.+
T Consensus 105 ~~~~l~~~~~~~~~~~~~~~~~~~--~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~t 182 (229)
T 2pze_A 105 KACQLEEDISKFAEKDNIVLGEGG--ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 182 (229)
T ss_dssp HHTTCHHHHTTSTTGGGSCBCTTC--TTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSE
T ss_pred HHhCcHHHHHhCcccccccccCCC--CcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCE
Confidence 555542 1112222222222222 6999999999999999999999999999999 9999999999863 44322
Q ss_pred --hcCCCcchhhcccCCC
Q 021147 302 --HADRNLSCKSCARNKV 317 (317)
Q Consensus 302 --~~~~~~~~~~~~~~~~ 317 (317)
...|++..+. .+|||
T Consensus 183 vi~vtH~~~~~~-~~d~v 199 (229)
T 2pze_A 183 RILVTSKMEHLK-KADKI 199 (229)
T ss_dssp EEEECCCHHHHH-HCSEE
T ss_pred EEEEcCChHHHH-hCCEE
Confidence 1455555554 36653
No 46
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.2e-37 Score=287.18 Aligned_cols=186 Identities=15% Similarity=0.208 Sum_probs=149.6
Q ss_pred ceEEEeEEEEcCCC---CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 71 LTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 71 ~I~~~nls~~y~~~---~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
||+++||+++|++. ..+ |+++||+|+ |++++|+||||||||||+|+|+|++ | ++|+|.++|++
T Consensus 1 ml~~~~l~~~y~~~~~~~~i-----l~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p-----~~G~I~~~g~~-- 66 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFS-----LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P-----YSGNIFINGME-- 66 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEE-----EEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C-----CEEEEEETTEE--
T ss_pred CEEEEEEEEEeCCCCcccee-----EEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C-----CCcEEEECCEE--
Confidence 58999999999641 334 999999999 9999999999999999999999998 4 58999999976
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhcc-ccccccccccchhhHHHHHHhhhccCCCChHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIG-CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 226 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig-~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~ 226 (317)
+... . . ++ .+| |+||++.+ .+|+.+|+.+...... ...+++.+
T Consensus 67 --------------------~~~~-~-~-~~-------~i~~~v~Q~~~l---~~tv~enl~~~~~~~~---~~~~~~~~ 110 (263)
T 2pjz_A 67 --------------------VRKI-R-N-YI-------RYSTNLPEAYEI---GVTVNDIVYLYEELKG---LDRDLFLE 110 (263)
T ss_dssp --------------------GGGC-S-C-CT-------TEEECCGGGSCT---TSBHHHHHHHHHHHTC---CCHHHHHH
T ss_pred --------------------Ccch-H-H-hh-------heEEEeCCCCcc---CCcHHHHHHHhhhhcc---hHHHHHHH
Confidence 2221 1 1 22 399 99999875 6799999987643221 12345778
Q ss_pred HHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH---
Q 021147 227 VATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE--- 301 (317)
Q Consensus 227 ~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~--- 301 (317)
+++.+++. ... +... .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 111 ~l~~~gl~~~~~---~~~~--------~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tvi 179 (263)
T 2pjz_A 111 MLKALKLGEEIL---RRKL--------YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGI 179 (263)
T ss_dssp HHHHTTCCGGGG---GSBG--------GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEE
T ss_pred HHHHcCCChhHh---cCCh--------hhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEE
Confidence 89999875 332 2333 7999999999999999999999999999999 999999999999988632
Q ss_pred hcCCCcchhhcccC-CC
Q 021147 302 HADRNLSCKSCARN-KV 317 (317)
Q Consensus 302 ~~~~~~~~~~~~~~-~~ 317 (317)
...|++..+...+| ||
T Consensus 180 ivtHd~~~~~~~~d~~i 196 (263)
T 2pjz_A 180 LVTHELDMLNLYKEYKA 196 (263)
T ss_dssp EEESCGGGGGGCTTSEE
T ss_pred EEEcCHHHHHHhcCceE
Confidence 35778888877787 64
No 47
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=2.3e-35 Score=275.46 Aligned_cols=182 Identities=15% Similarity=0.134 Sum_probs=123.4
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++||++.+ . .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 38 ~~~l~~~~l~~~~--~-~v-----l~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~---- 100 (290)
T 2bbs_A 38 DDSLSFSNFSLLG--T-PV-----LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIKHSGR---- 100 (290)
T ss_dssp ------------C--C-CS-----EEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC-----EEEEEEECCSC----
T ss_pred CceEEEEEEEEcC--c-eE-----EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCE----
Confidence 3579999999864 2 33 999999999999999999999999999999999999 99999997763
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
|+|+||++.+++ .||++|+. +... .. .+..+++
T Consensus 101 --------------------------------------i~~v~Q~~~l~~--~tv~enl~-~~~~---~~---~~~~~~~ 133 (290)
T 2bbs_A 101 --------------------------------------ISFCSQNSWIMP--GTIKENII-GVSY---DE---YRYRSVI 133 (290)
T ss_dssp --------------------------------------EEEECSSCCCCS--SBHHHHHH-TTCC---CH---HHHHHHH
T ss_pred --------------------------------------EEEEeCCCccCc--ccHHHHhh-Cccc---ch---HHHHHHH
Confidence 788888877665 38999987 3211 11 1233445
Q ss_pred HHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHH-HHHHH---
Q 021147 229 TTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDML-RYCLE--- 301 (317)
Q Consensus 229 ~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l-~~l~~--- 301 (317)
+.+++. ...++.+..+.+...+ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.+ +++.+
T Consensus 134 ~~~~l~~~l~~~~~~~~~~~~~~~--~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~t 211 (290)
T 2bbs_A 134 KACQLEEDISKFAEKDNIVLGEGG--ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 211 (290)
T ss_dssp HHTTCHHHHHTSTTGGGCBC------CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSE
T ss_pred HHhChHHHHHhccccccchhcCcc--CcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCE
Confidence 555552 1122222322233333 6899999999999999999999999999999 9999999999864 33321
Q ss_pred --hcCCCcchhhcccCCC
Q 021147 302 --HADRNLSCKSCARNKV 317 (317)
Q Consensus 302 --~~~~~~~~~~~~~~~~ 317 (317)
...|++..+. .+|||
T Consensus 212 viivtHd~~~~~-~~d~i 228 (290)
T 2bbs_A 212 RILVTSKMEHLK-KADKI 228 (290)
T ss_dssp EEEECCCHHHHH-HSSEE
T ss_pred EEEEecCHHHHH-cCCEE
Confidence 1455555554 36653
No 48
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=4.5e-32 Score=272.71 Aligned_cols=181 Identities=15% Similarity=0.222 Sum_probs=142.3
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
..++++|+++.|++ .. |+.+||+|++||++||+||||||||||+|+|+|+++ |++|+|.+++..
T Consensus 268 ~~l~~~~l~~~~~~--~~-----l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~~---- 331 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD--FQ-----LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT-----ADEGSVTPEKQI---- 331 (538)
T ss_dssp EEEEECCEEEEETT--EE-----EEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSBCCEESSCCC----
T ss_pred ceEEEcceEEEECC--EE-----EEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCee----
Confidence 47999999999965 23 888999999999999999999999999999999999 999999976643
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
++|+||+... ....||.+|+.+....... .....+.++++
T Consensus 332 -------------------------------------i~~~~q~~~~-~~~~tv~~~l~~~~~~~~~--~~~~~~~~~l~ 371 (538)
T 3ozx_A 332 -------------------------------------LSYKPQRIFP-NYDGTVQQYLENASKDALS--TSSWFFEEVTK 371 (538)
T ss_dssp -------------------------------------EEEECSSCCC-CCSSBHHHHHHHHCSSTTC--TTSHHHHHTTT
T ss_pred -------------------------------------eEeechhccc-ccCCCHHHHHHHhhhhccc--hhHHHHHHHHH
Confidence 6666665432 2245888888764221111 11123456666
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
.+++.. +. +..+ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.++|+++.+.
T Consensus 372 ~~~l~~--~~-~~~~--------~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi 440 (538)
T 3ozx_A 372 RLNLHR--LL-ESNV--------NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTF 440 (538)
T ss_dssp TTTGGG--CT-TSBG--------GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HcCCHH--Hh-cCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 666532 22 2333 7999999999999999999999999999999 9999999999999998643
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+..+||||
T Consensus 441 ~vsHdl~~~~~~aDri 456 (538)
T 3ozx_A 441 IIDHDLSIHDYIADRI 456 (538)
T ss_dssp EECSCHHHHHHHCSEE
T ss_pred EEeCCHHHHHHhCCEE
Confidence 578888888888885
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=3.8e-31 Score=269.30 Aligned_cols=178 Identities=17% Similarity=0.253 Sum_probs=141.1
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+++++|+++.|++. . |+++||+|++||++||+||||||||||+|+|+|+++ |++|+|.+. ..
T Consensus 356 ~~l~~~~l~~~~~~~--~-----l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~---~~-- 418 (607)
T 3bk7_A 356 TLVEYPRLVKDYGSF--K-----LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKVEWD---LT-- 418 (607)
T ss_dssp EEEEECCEEEECSSC--E-----EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBSCCCCC---CC--
T ss_pred eEEEEeceEEEecce--E-----EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEEe---eE--
Confidence 479999999999642 3 999999999999999999999999999999999999 999998741 11
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhh-hccCCCChHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVL-KSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~-~~~~~~~~~~~~~~~~~a 228 (317)
+||+||++... ..+||.+++... .... ...+.+.+++
T Consensus 419 -------------------------------------i~~v~Q~~~~~-~~~tv~e~~~~~~~~~~----~~~~~~~~~l 456 (607)
T 3bk7_A 419 -------------------------------------VAYKPQYIKAE-YEGTVYELLSKIDSSKL----NSNFYKTELL 456 (607)
T ss_dssp -------------------------------------EEEECSSCCCC-CSSBHHHHHHHHHHHHH----HCHHHHHHTH
T ss_pred -------------------------------------EEEEecCccCC-CCCcHHHHHHhhhccCC----CHHHHHHHHH
Confidence 67777766432 345777776543 1100 1123466788
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++.... ...+ .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.++|+++.+.
T Consensus 457 ~~~~l~~~~---~~~~--------~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv 525 (607)
T 3bk7_A 457 KPLGIIDLY---DRNV--------EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 525 (607)
T ss_dssp HHHTCTTTT---TSBG--------GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHcCCchHh---cCCh--------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 888874221 3334 7999999999999999999999999999999 9999999999999998642
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|||
T Consensus 526 i~vsHd~~~~~~~adrv 542 (607)
T 3bk7_A 526 LVVEHDVLMIDYVSDRL 542 (607)
T ss_dssp EEECSCHHHHHHHCSEE
T ss_pred EEEeCCHHHHHHhCCEE
Confidence 568888888888875
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=3.9e-31 Score=265.99 Aligned_cols=178 Identities=17% Similarity=0.266 Sum_probs=138.9
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+++++|+++.|++ .. |+++||+|++||++||+||||||||||+|+|+|+++ |++|+|.+. ..
T Consensus 286 ~~l~~~~l~~~~~~--~~-----l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~i~~~---~~-- 348 (538)
T 1yqt_A 286 TLVTYPRLVKDYGS--FR-----LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKIEWD---LT-- 348 (538)
T ss_dssp EEEEECCEEEEETT--EE-----EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBCCCCCC---CC--
T ss_pred eEEEEeeEEEEECC--EE-----EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEEC---ce--
Confidence 47999999999964 23 899999999999999999999999999999999999 999998741 11
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhh-hccCCCChHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVL-KSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~-~~~~~~~~~~~~~~~~~a 228 (317)
|||+||++... ..+||.+++... ..... ..+.+.+++
T Consensus 349 -------------------------------------i~~v~Q~~~~~-~~~tv~~~~~~~~~~~~~----~~~~~~~~l 386 (538)
T 1yqt_A 349 -------------------------------------VAYKPQYIKAD-YEGTVYELLSKIDASKLN----SNFYKTELL 386 (538)
T ss_dssp -------------------------------------EEEECSSCCCC-CSSBHHHHHHHHHHHHHT----CHHHHHHTT
T ss_pred -------------------------------------EEEEecCCcCC-CCCcHHHHHHhhhccCCC----HHHHHHHHH
Confidence 67777766432 345776666543 11000 123355666
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++... . ..++ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.++|+++.+.
T Consensus 387 ~~~~l~~~--~-~~~~--------~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tv 455 (538)
T 1yqt_A 387 KPLGIIDL--Y-DREV--------NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 455 (538)
T ss_dssp TTTTCGGG--T-TSBG--------GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHcCChhh--h-cCCh--------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 66666321 1 3333 7999999999999999999999999999999 9999999999999998632
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|++..+..+||||
T Consensus 456 i~vsHd~~~~~~~~drv 472 (538)
T 1yqt_A 456 LVVEHDVLMIDYVSDRL 472 (538)
T ss_dssp EEECSCHHHHHHHCSEE
T ss_pred EEEeCCHHHHHHhCCEE
Confidence 578888888888875
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=1.9e-30 Score=264.24 Aligned_cols=201 Identities=13% Similarity=0.131 Sum_probs=140.5
Q ss_pred CCceEE--------EeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEE
Q 021147 69 GSLTDA--------KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 140 (317)
Q Consensus 69 ~~~I~~--------~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~ 140 (317)
..+|++ +||+++|++...+ |+++| +|++||++||+||||||||||+|+|+|+++ |++|++.
T Consensus 81 ~~~i~i~~l~~~~~~~ls~~yg~~~~~-----l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~-----p~~G~~~ 149 (607)
T 3bk7_A 81 FNAISIVNLPEQLDEDCVHRYGVNAFV-----LYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI-----PNLCEDN 149 (607)
T ss_dssp SCCCEEEEECTTGGGSEEEECSTTCCE-----EECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC-----CCTTTTC
T ss_pred cceEEEecCCccccCCeEEEECCCCee-----eCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC-----CCCCccc
Confidence 346888 8999999754333 99999 999999999999999999999999999999 8999841
Q ss_pred ECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccc--hhhHHHHHHhhhccCCCCh
Q 021147 141 YNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF--VIFVVDGLAVLKSMEGDSD 218 (317)
Q Consensus 141 i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~--~~tv~eni~~~~~~~~~~~ 218 (317)
.+-... . ..+.+.+..............+++++|....+.. ..|+.+|+.... ..
T Consensus 150 ~~~~~~-----~-------------~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~---~~-- 206 (607)
T 3bk7_A 150 DSWDNV-----I-------------RAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD---EV-- 206 (607)
T ss_dssp CCHHHH-----H-------------HHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC---CS--
T ss_pred cccchh-----h-------------heeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH---HH--
Confidence 000000 0 0011111111111111111236777776432221 127888886311 11
Q ss_pred HHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHH
Q 021147 219 VEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLR 297 (317)
Q Consensus 219 ~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~ 297 (317)
+++.++++.+++.... +..+ .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.+.|+
T Consensus 207 ---~~~~~~L~~lgL~~~~---~~~~--------~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~ 272 (607)
T 3bk7_A 207 ---GKFEEVVKELELENVL---DREL--------HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIR 272 (607)
T ss_dssp ---SCHHHHHHHTTCTTGG---GSBG--------GGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHcCCCchh---CCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 2367889999984322 2333 7999999999999999999999999999999 99999999999999
Q ss_pred HHHHh------cCCCcchhhcccCCC
Q 021147 298 YCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 298 ~l~~~------~~~~~~~~~~~~~~~ 317 (317)
++.+. ..|++..+..++|||
T Consensus 273 ~l~~~g~tvIivsHdl~~~~~~adri 298 (607)
T 3bk7_A 273 RLANEGKAVLVVEHDLAVLDYLSDVI 298 (607)
T ss_dssp HHHHTTCEEEEECSCHHHHHHHCSEE
T ss_pred HHHhcCCEEEEEecChHHHHhhCCEE
Confidence 98653 567777777777764
No 52
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=2.7e-30 Score=259.92 Aligned_cols=189 Identities=14% Similarity=0.168 Sum_probs=136.2
Q ss_pred eEE-EeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEE---------EE
Q 021147 72 TDA-KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV---------TY 141 (317)
Q Consensus 72 I~~-~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I---------~i 141 (317)
.++ +||+|+|++...+ |+++| +|++||++||+||||||||||+|+|+|+++ |++|++ .+
T Consensus 21 ~~~~~~ls~~yg~~~~~-----l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~-----p~~G~~~~~~~~~~~~~ 89 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFV-----LYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI-----PNLCGDNDSWDGVIRAF 89 (538)
T ss_dssp ---CCCEEEECSTTCCE-----EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTTCCSHHHHHHHT
T ss_pred hhHhcCcEEEECCcccc-----ccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCccCcchhhhHHhh
Confidence 455 5999999754333 99999 999999999999999999999999999999 889984 12
Q ss_pred CcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccc--hhhHHHHHHhhhccCCCChH
Q 021147 142 NSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF--VIFVVDGLAVLKSMEGDSDV 219 (317)
Q Consensus 142 ~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~--~~tv~eni~~~~~~~~~~~~ 219 (317)
+|. +..............+++++|....++. ..++.+++.... .
T Consensus 90 ~g~---------------------------~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~---~---- 135 (538)
T 1yqt_A 90 RGN---------------------------ELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD---E---- 135 (538)
T ss_dssp TTS---------------------------THHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC---S----
T ss_pred CCc---------------------------cHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh---H----
Confidence 222 1111111111111236777776543221 126777775321 1
Q ss_pred HHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 220 EKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 220 ~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
.+++.++++.+++.... ...+ .+||||||||++|||||+.+|+++||||||+ ||+.+...+.+.|++
T Consensus 136 -~~~~~~~l~~lgl~~~~---~~~~--------~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~ 203 (538)
T 1yqt_A 136 -TGKLEEVVKALELENVL---EREI--------QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRR 203 (538)
T ss_dssp -SSCHHHHHHHTTCTTTT---TSBG--------GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCChhh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 12367889999984322 3344 7999999999999999999999999999999 999999999999999
Q ss_pred HHHh------cCCCcchhhcccCCC
Q 021147 299 CLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 299 l~~~------~~~~~~~~~~~~~~~ 317 (317)
+.+. ..|++..+..++|||
T Consensus 204 l~~~g~tvi~vsHd~~~~~~~~dri 228 (538)
T 1yqt_A 204 LSEEGKSVLVVEHDLAVLDYLSDII 228 (538)
T ss_dssp HHHTTCEEEEECSCHHHHHHHCSEE
T ss_pred HHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 8653 567777777778874
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=2.8e-30 Score=272.98 Aligned_cols=229 Identities=13% Similarity=0.132 Sum_probs=143.3
Q ss_pred CCceEEEeEEEEcCCC-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 69 GSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
.++|+++||+|+|++. ..+ |+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|++++. ..
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~i-----L~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~-----P~sG~I~~~~~-~~ 737 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKPQ-----ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL-----PTSGEVYTHEN-CR 737 (986)
T ss_dssp SEEEEEEEEEECCTTCSSCS-----EEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC-----CSEEEEEECTT-CC
T ss_pred CceEEEEeeEEEeCCCCcee-----eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEEcCc-cc
Confidence 3579999999999753 334 999999999999999999999999999999999999 99999999975 46
Q ss_pred eeeEecccC--CCCc--cccccee---e-ccCChHHHHH-----------HHHH-------hhhhccccc----cccccc
Q 021147 148 GTYFLQEYT--IPRG--VRHGELV---I-RRSDSSSLRN-----------RMRC-------KAHKIGCEP----SVIRKV 197 (317)
Q Consensus 148 ~~~~~Q~~~--l~~~--~~~~~~~---~-~~~~~~~~r~-----------~~~~-------~~~~ig~v~----Q~~~~~ 197 (317)
++|++|++. +... .+..++. . ...+...+.+ .+.. .....+++. +....+
T Consensus 738 I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~ 817 (986)
T 2iw3_A 738 IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEY 817 (986)
T ss_dssp EEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEE
T ss_pred eEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchh
Confidence 899999642 1100 0000000 0 0000000000 0000 000001100 000000
Q ss_pred ----------------cchhhHHHHHHhhh--------------------ccCCCChHHHHHHHHHHHHcCCCcccCCCC
Q 021147 198 ----------------NFVIFVVDGLAVLK--------------------SMEGDSDVEKQYNQIVATTFNCPYLSFRDD 241 (317)
Q Consensus 198 ----------------~~~~tv~eni~~~~--------------------~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~ 241 (317)
...+|+.+|+.+.. ..........+++.++++.+++...... +
T Consensus 818 e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~-~ 896 (986)
T 2iw3_A 818 ECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVS-H 896 (986)
T ss_dssp EEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHH-H
T ss_pred hhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhc-C
Confidence 01122223221100 0000011123557788888887421000 2
Q ss_pred CCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH---HhcCCCcchhhcccCCC
Q 021147 242 KPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL---EHADRNLSCKSCARNKV 317 (317)
Q Consensus 242 ~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~---~~~~~~~~~~~~~~~~~ 317 (317)
..+ .+||||||||++||||++.+|+++||||||+ ||+.+...+.+.|+++. -...|+...+..++|||
T Consensus 897 ~~~--------~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrV 968 (986)
T 2iw3_A 897 SRI--------RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEV 968 (986)
T ss_dssp SCG--------GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEE
T ss_pred CCc--------cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEE
Confidence 233 6999999999999999999999999999999 99999999999887752 13677788888788764
No 54
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7e-29 Score=252.50 Aligned_cols=176 Identities=19% Similarity=0.240 Sum_probs=132.7
Q ss_pred EeEEEEcCCCCccccccCceeeeeEecCC-----CEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 75 KNKILSYTPGAWIENVGGMTLSDYDVPKT-----TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 75 ~nls~~y~~~~~~~~~~~L~~isl~I~~G-----e~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++++++|++.... ++++||++.+| |++||+||||||||||+|+|+|+++ |++|+.. . ...
T Consensus 350 ~~~~~~y~~~~~~-----l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~-----p~~G~~~-~--~~~-- 414 (608)
T 3j16_B 350 ASRAFSYPSLKKT-----QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK-----PDEGQDI-P--KLN-- 414 (608)
T ss_dssp SSSCCEECCEEEE-----CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC-----CSBCCCC-C--SCC--
T ss_pred cceeEEecCcccc-----cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC-----CCCCcCc-c--CCc--
Confidence 6788888754434 89999999999 7899999999999999999999999 8888631 1 111
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
++|+||+.... ...|+.+++........ .......++++
T Consensus 415 -------------------------------------i~~~~q~~~~~-~~~tv~e~~~~~~~~~~---~~~~~~~~~l~ 453 (608)
T 3j16_B 415 -------------------------------------VSMKPQKIAPK-FPGTVRQLFFKKIRGQF---LNPQFQTDVVK 453 (608)
T ss_dssp -------------------------------------EEEECSSCCCC-CCSBHHHHHHHHCSSTT---TSHHHHHHTHH
T ss_pred -------------------------------------EEEeccccccc-CCccHHHHHHHHhhccc---ccHHHHHHHHH
Confidence 66666664322 23467776643211111 11234567788
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
.+++... . +..+ .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.++|+++.+.
T Consensus 454 ~l~l~~~--~-~~~~--------~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tvi 522 (608)
T 3j16_B 454 PLRIDDI--I-DQEV--------QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522 (608)
T ss_dssp HHTSTTT--S-SSBS--------SSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HcCChhh--h-cCCh--------hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 8887422 2 2333 7999999999999999999999999999999 9999999999999998642
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|||
T Consensus 523 ivtHdl~~~~~~aDrv 538 (608)
T 3j16_B 523 IVEHDFIMATYLADKV 538 (608)
T ss_dssp EECSCHHHHHHHCSEE
T ss_pred EEeCCHHHHHHhCCEE
Confidence 678888888888875
No 55
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=7.8e-29 Score=252.15 Aligned_cols=196 Identities=15% Similarity=0.141 Sum_probs=127.4
Q ss_pred eEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEeccc
Q 021147 76 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEY 155 (317)
Q Consensus 76 nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~ 155 (317)
|++++|+..... |++++ .+++||++||+||||||||||+|+|+|+++ |++|+|.........
T Consensus 82 ~~~~~Y~~~~~~-----l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~-----P~~G~i~~~~~~~~~------- 143 (608)
T 3j16_B 82 HVTHRYSANSFK-----LHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK-----PNLGRFDDPPEWQEI------- 143 (608)
T ss_dssp TEEEECSTTSCE-----EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTTCCSSCHHHH-------
T ss_pred CeEEEECCCcee-----ecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCceEecccchhhh-------
Confidence 568889765543 77777 699999999999999999999999999999 999987311110000
Q ss_pred CCCCcccccceeeccCChHHHHHHHHHhhhhccc--cccccccc-----cchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 156 TIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGC--EPSVIRKV-----NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 156 ~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~--v~Q~~~~~-----~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
...+.+.....+.... ..+.+.. .+|....+ ....++.+++.... ....+++.+++
T Consensus 144 ---------~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~------~~~~~~~~~~l 206 (608)
T 3j16_B 144 ---------IKYFRGSELQNYFTKM--LEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM------EKSPEDVKRYI 206 (608)
T ss_dssp ---------HHHTTTSTHHHHHHHH--HHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC------CSCHHHHHHHH
T ss_pred ---------hheecChhhhhhhhHH--HHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh------hhHHHHHHHHH
Confidence 0001111111111110 0111221 12211100 01123444433211 11234577889
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++.... +..+ .+|||||+||++|||||+.+|+++||||||+ ||+.+...+.+.|+++.+.
T Consensus 207 ~~~gl~~~~---~~~~--------~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi 275 (608)
T 3j16_B 207 KILQLENVL---KRDI--------EKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVI 275 (608)
T ss_dssp HHHTCTGGG---GSCT--------TTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEE
T ss_pred HHcCCcchh---CCCh--------HHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 999985322 2333 7999999999999999999999999999999 9999999999999998643
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|||
T Consensus 276 ~vtHdl~~~~~~~drv 291 (608)
T 3j16_B 276 CVEHDLSVLDYLSDFV 291 (608)
T ss_dssp EECSCHHHHHHHCSEE
T ss_pred EEeCCHHHHHHhCCEE
Confidence 567777777778874
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.94 E-value=2.3e-27 Score=244.04 Aligned_cols=187 Identities=16% Similarity=0.198 Sum_probs=101.6
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHH---------------------HHHhhcccCCCCCCcCc-------EEEECcc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLV---------------------NRISKVFENDKFASERA-------QVTYNSS 144 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLl---------------------klL~Gl~~p~~~~p~~G-------~I~i~g~ 144 (317)
|+||||+|++||++||+||||||||||+ +++.|+.. |+.| .|.+++.
T Consensus 34 L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~-----~~~~~i~~~~~~i~~~~~ 108 (670)
T 3ux8_A 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK-----PDVDAIEGLSPAISIDQK 108 (670)
T ss_dssp CCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC-------------------CCCSEEESCCCEEEESSC
T ss_pred eeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc-----CCccceeccccceEecCc
Confidence 9999999999999999999999999998 88888888 7744 4455543
Q ss_pred c------CceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhcccccccccc-ccchhhHHHHHHhhhccC-CC
Q 021147 145 V------GDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK-VNFVIFVVDGLAVLKSME-GD 216 (317)
Q Consensus 145 ~------~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~-~~~~~tv~eni~~~~~~~-~~ 216 (317)
+ ..+++++|.+.++ ..++.++++++|.... ....+|+.+|+.+..... ..
T Consensus 109 ~~~~~~~~~ig~v~q~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~ 166 (670)
T 3ux8_A 109 TTSRNPRSTVGTVTEIYDYL----------------------RLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTE 166 (670)
T ss_dssp C-----CCBHHHHTTCC-----------------------------------------------CC--------------
T ss_pred hhhccchhceeeeechhhhH----------------------HHHHhhhcccccccccccccCCcHHHHHHHhhccccch
Confidence 2 1123333322111 0011124554443221 122468889987642111 00
Q ss_pred --ChH------HHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccc--eeeccCCCC-CC
Q 021147 217 --SDV------EKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPA--KQIFDIPES-SD 285 (317)
Q Consensus 217 --~~~------~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~--ilIlDEPts-LD 285 (317)
... ...+...+++.+++.... . +..+ .+||||||||++|||||+.+|+ ++||||||+ ||
T Consensus 167 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-~-~~~~--------~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD 236 (670)
T 3ux8_A 167 KEAQIARLILREIRDRLGFLQNVGLDYLT-L-SRSA--------GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLH 236 (670)
T ss_dssp ------------CHHHHHHHHHTTCTTCC-T-TCBG--------GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCchhh-h-cCCc--------ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCC
Confidence 000 001123346677763211 1 2333 7999999999999999999988 999999999 99
Q ss_pred HHHHHHHHHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 286 PENELIIVDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 286 ~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
+.+...+.+.|+++.+. ..|++..+. .+|||
T Consensus 237 ~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~i 273 (670)
T 3ux8_A 237 QRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYL 273 (670)
T ss_dssp GGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HCSEE
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-hCCEE
Confidence 99999999999998643 456666544 36654
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.94 E-value=8.9e-27 Score=246.30 Aligned_cols=176 Identities=15% Similarity=0.137 Sum_probs=132.5
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
..|...|++++|++. .+ |+|+||+|++|++++|+||||||||||+|+|+| |+| +|.+
T Consensus 434 ~~L~~~~ls~~yg~~-~i-----L~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-----------G~i--~g~~---- 490 (986)
T 2iw3_A 434 EDLCNCEFSLAYGAK-IL-----LNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-----------GQV--DGFP---- 490 (986)
T ss_dssp CEEEEEEEEEEETTE-EE-----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-----------TCS--TTCC----
T ss_pred ceeEEeeEEEEECCE-Ee-----EecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-----------CCc--CCCc----
Confidence 357778999999754 34 999999999999999999999999999999995 111 2221
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
... . . +++|++|++..+...+|+.+|+.+ . ... . .+++.++++
T Consensus 491 ------------------~~~-~-----~-------~~~~v~q~~~~~~~~ltv~e~l~~-~-~~~-~---~~~v~~~L~ 533 (986)
T 2iw3_A 491 ------------------TQE-E-----C-------RTVYVEHDIDGTHSDTSVLDFVFE-S-GVG-T---KEAIKDKLI 533 (986)
T ss_dssp ------------------CTT-T-----S-------CEEETTCCCCCCCTTSBHHHHHHT-T-CSS-C---HHHHHHHHH
T ss_pred ------------------ccc-c-----e-------eEEEEcccccccccCCcHHHHHHH-h-hcC-H---HHHHHHHHH
Confidence 000 0 0 167788765334456789999975 1 111 1 456788899
Q ss_pred HcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH----hc
Q 021147 230 TFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE----HA 303 (317)
Q Consensus 230 ~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~----~~ 303 (317)
.++++ ... ..++ .+||||||||++||||++.+|+++||||||+ ||+.++..+.+.|++ .. ..
T Consensus 534 ~lgL~~~~~---~~~~--------~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~-~g~tvIiv 601 (986)
T 2iw3_A 534 EFGFTDEMI---AMPI--------SALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT-CGITSITI 601 (986)
T ss_dssp HTTCCHHHH---HSBG--------GGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH-SCSEEEEE
T ss_pred HcCCChhhh---cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh-CCCEEEEE
Confidence 99974 221 2333 7999999999999999999999999999999 999999999999987 21 15
Q ss_pred CCCcchhhcccCCC
Q 021147 304 DRNLSCKSCARNKV 317 (317)
Q Consensus 304 ~~~~~~~~~~~~~~ 317 (317)
.|++..+..++|||
T Consensus 602 SHdl~~l~~~adri 615 (986)
T 2iw3_A 602 SHDSVFLDNVCEYI 615 (986)
T ss_dssp CSCHHHHHHHCSEE
T ss_pred ECCHHHHHHhCCEE
Confidence 67777777777764
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.94 E-value=1.3e-27 Score=240.19 Aligned_cols=183 Identities=17% Similarity=0.175 Sum_probs=126.5
Q ss_pred EeEEEEcCCCCccccccCceeeeeEec-CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEE-----------EEC
Q 021147 75 KNKILSYTPGAWIENVGGMTLSDYDVP-KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-----------TYN 142 (317)
Q Consensus 75 ~nls~~y~~~~~~~~~~~L~~isl~I~-~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I-----------~i~ 142 (317)
++++.+|+.+. ++-..|.+. +||++||+||||||||||+|+|+|+++ |++|+| .++
T Consensus 3 ~~~~~~~~~~~-------f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~-----p~~G~i~~~~~~~~~~~~~~ 70 (538)
T 3ozx_A 3 GEVIHRYKVNG-------FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII-----PNFGDPNSKVGKDEVLKRFR 70 (538)
T ss_dssp CCEEEESSTTS-------CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC-----CCTTCTTSCCCHHHHHHHHT
T ss_pred CCCceecCCCc-------eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCccccccchhhHHhhcC
Confidence 35788997654 344555555 899999999999999999999999999 999987 233
Q ss_pred cccCceeeEecccCCCCcccccceeeccCChHHHHHHHHH----hhhhccccccccccccchhhHHHHHHhhhccCCCCh
Q 021147 143 SSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRC----KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD 218 (317)
Q Consensus 143 g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~ 218 (317)
|++ ...+...... ....+.++.+.+.++. .++.+++.... ..
T Consensus 71 g~~---------------------------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~l~~~~---~~-- 116 (538)
T 3ozx_A 71 GKE---------------------------IYNYFKELYSNELKIVHKIQYVEYASKFLK--GTVNEILTKID---ER-- 116 (538)
T ss_dssp TST---------------------------THHHHHHHHTTCCCEEEECSCTTGGGTTCC--SBHHHHHHHHC---CS--
T ss_pred Cee---------------------------HHHHHHHHhhcccchhhccchhhhhhhhcc--CcHHHHhhcch---hH--
Confidence 332 1111111000 0112344444333332 25666543211 11
Q ss_pred HHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHH
Q 021147 219 VEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLR 297 (317)
Q Consensus 219 ~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~ 297 (317)
+++.++++.+++.... ...+ .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.+.|+
T Consensus 117 ---~~~~~~l~~l~l~~~~---~~~~--------~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~ 182 (538)
T 3ozx_A 117 ---GKKDEVKELLNMTNLW---NKDA--------NILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIR 182 (538)
T ss_dssp ---SCHHHHHHHTTCGGGT---TSBG--------GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHcCCchhh---cCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 1266788888874322 3344 7999999999999999999999999999999 99999999999999
Q ss_pred HHHH-----hcCCCcchhhcccCCC
Q 021147 298 YCLE-----HADRNLSCKSCARNKV 317 (317)
Q Consensus 298 ~l~~-----~~~~~~~~~~~~~~~~ 317 (317)
++.+ ...|++..+..++|+|
T Consensus 183 ~l~~g~tii~vsHdl~~~~~~~d~i 207 (538)
T 3ozx_A 183 ELLKNKYVIVVDHDLIVLDYLTDLI 207 (538)
T ss_dssp HHCTTSEEEEECSCHHHHHHHCSEE
T ss_pred HHhCCCEEEEEEeChHHHHhhCCEE
Confidence 9843 2567777777777764
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.93 E-value=2.9e-26 Score=235.89 Aligned_cols=114 Identities=17% Similarity=0.199 Sum_probs=81.3
Q ss_pred ccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhccc
Q 021147 187 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLG 266 (317)
Q Consensus 187 ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~ia 266 (317)
+++.+|....+ ..+|+.+|+.+... ....+++.+++..+++.... . +... .+||||||||++||
T Consensus 492 ~~~~~~~~~~~-~~ltv~e~l~~~~~-----~~~~~~~~~~l~~~~l~~~~-~-~~~~--------~~LSgG~~qrv~iA 555 (670)
T 3ux8_A 492 VTYKGKNIAEV-LDMTVEDALDFFAS-----IPKIKRKLETLYDVGLGYMK-L-GQPA--------TTLSGGEAQRVKLA 555 (670)
T ss_dssp CCBTTBCHHHH-HTSBHHHHHHHTTT-----CHHHHHHHHHHHHTTCTTSB-T-TCCG--------GGCCHHHHHHHHHH
T ss_pred eeecCCCHHHH-hhCCHHHHHHHHHH-----hhhHHHHHHHHHHcCCchhh-c-cCCc--------hhCCHHHHHHHHHH
Confidence 45555544322 24689999987532 12334566777778863211 1 2333 79999999999999
Q ss_pred ceecccc---ceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 267 ELLGIPP---AKQIFDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 267 ral~~~p---~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
|||+.+| +++||||||+ ||+.+...+.++|+++.+. ..|++..+. .+|||
T Consensus 556 raL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~i 615 (670)
T 3ux8_A 556 AELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYI 615 (670)
T ss_dssp HHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEE
T ss_pred HHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH-hCCEE
Confidence 9999876 5999999999 9999999999999998653 567777654 47764
No 60
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.90 E-value=1e-23 Score=220.77 Aligned_cols=85 Identities=15% Similarity=0.133 Sum_probs=68.9
Q ss_pred HHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccc---cceeeccCCCC-CCHHHHHHHHHHHH
Q 021147 222 QYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIP---PAKQIFDIPES-SDPENELIIVDMLR 297 (317)
Q Consensus 222 ~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~---p~ilIlDEPts-LD~~t~~~l~~~l~ 297 (317)
+++.++++.+++.... .+.+. .+|||||+||++|||+|+.+ |+++||||||+ ||+.+...+.+.|+
T Consensus 708 ~~~~~~L~~~gL~~~~--l~~~~--------~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~ 777 (842)
T 2vf7_A 708 FRALDTLREVGLGYLR--LGQPA--------TELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLV 777 (842)
T ss_dssp HHHHHHHHHTTCTTSB--TTCCG--------GGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccc--ccCCc--------ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 4567888888874211 13344 79999999999999999996 79999999999 99999999999999
Q ss_pred HHHHh------cCCCcchhhcccCCC
Q 021147 298 YCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 298 ~l~~~------~~~~~~~~~~~~~~~ 317 (317)
++.+. ..|++..+ ..+|||
T Consensus 778 ~L~~~G~tVIvisHdl~~i-~~aDri 802 (842)
T 2vf7_A 778 KLVDAGNTVIAVEHKMQVV-AASDWV 802 (842)
T ss_dssp HHHHTTCEEEEECCCHHHH-TTCSEE
T ss_pred HHHhCCCEEEEEcCCHHHH-HhCCEE
Confidence 98653 56777777 567774
No 61
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.89 E-value=2.5e-26 Score=215.65 Aligned_cols=184 Identities=14% Similarity=0.080 Sum_probs=131.8
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHccccccccC------CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEE
Q 021147 33 DDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSL 106 (317)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~v 106 (317)
+.......|..+.++..+..|+.++++.+++.... ..++|+++||+|.|+ ..+ |+++||+|++|+++
T Consensus 57 ~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~--~~v-----L~~vsl~i~~Ge~v 129 (305)
T 2v9p_A 57 HVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITF--INA-----LKLWLKGIPKKNCL 129 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSCCTHHHHHHHHHTTCCHHHH--HHH-----HHHHHHTCTTCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcccccCCeEEEEEEEEEcC--hhh-----hccceEEecCCCEE
Confidence 34566778888889999999999998765432211 113599999999996 334 99999999999999
Q ss_pred EEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhh
Q 021147 107 LLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHK 186 (317)
Q Consensus 107 aIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (317)
+|+||||||||||+++|+|++ +|+|.
T Consensus 130 aIvGpsGsGKSTLl~lL~gl~--------~G~I~---------------------------------------------- 155 (305)
T 2v9p_A 130 AFIGPPNTGKSMLCNSLIHFL--------GGSVL---------------------------------------------- 155 (305)
T ss_dssp EEECSSSSSHHHHHHHHHHHH--------TCEEE----------------------------------------------
T ss_pred EEECCCCCcHHHHHHHHhhhc--------CceEE----------------------------------------------
Confidence 999999999999999999997 37664
Q ss_pred ccccccccccccchhhHHH-HHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcc
Q 021147 187 IGCEPSVIRKVNFVIFVVD-GLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYL 265 (317)
Q Consensus 187 ig~v~Q~~~~~~~~~tv~e-ni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~i 265 (317)
++++|++.+|.. |+++ |+.++... . . .+.+.++.+ ++ +++. | ..||||||||
T Consensus 156 -~~v~q~~~lf~~--ti~~~ni~~~~~~-~--~----~~~~~i~~~-L~-----~gld------g--~~LSgGqkQR--- 208 (305)
T 2v9p_A 156 -SFANHKSHFWLA--SLADTRAALVDDA-T--H----ACWRYFDTY-LR-----NALD------G--YPVSIDRKHK--- 208 (305)
T ss_dssp -CGGGTTSGGGGG--GGTTCSCEEEEEE-C--H----HHHHHHHHT-TT-----GGGG------T--CCEECCCSSC---
T ss_pred -EEecCccccccc--cHHHHhhccCccc-c--H----HHHHHHHHH-hH-----ccCC------c--cCcCHHHHHH---
Confidence 344555555543 5665 66654211 1 1 233444442 22 2332 2 6899999999
Q ss_pred cceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHhcCCCcchhhcccCCC
Q 021147 266 GELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEHADRNLSCKSCARNKV 317 (317)
Q Consensus 266 aral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 317 (317)
|||++++|+++| |+ ||+.++..+.. ..|++..+ ..+|||
T Consensus 209 ARAll~~p~iLl----Ts~LD~~~~~~i~~--------ltH~~~~~-~~aD~i 248 (305)
T 2v9p_A 209 AAVQIKAPPLLV----TSNIDVQAEDRYLY--------LHSRVQTF-RFEQPC 248 (305)
T ss_dssp CCCEECCCCEEE----EESSCSTTCGGGGG--------GTTTEEEE-ECCCCC
T ss_pred HHHHhCCCCEEE----ECCCCHHHHHHHHH--------HhCCHHHH-HhCCEE
Confidence 999999999999 99 99999988862 14555544 356664
No 62
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.89 E-value=8.8e-27 Score=230.12 Aligned_cols=158 Identities=15% Similarity=0.048 Sum_probs=115.2
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc-E-EEECcccC
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-Q-VTYNSSVG 146 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G-~-I~i~g~~~ 146 (317)
.+|++++||+|.|+ ++||++++|++++|+||||||||||+|+|+|++. |++| + |+++|..
T Consensus 116 ~~mi~~~nl~~~y~------------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~-----p~~G~~pI~vdg~~- 177 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL-----KFNAYQPLYINLDP- 177 (460)
T ss_dssp CTHHHHHHHHHHHH------------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH-----HHHCCCCEEEECCT-
T ss_pred cchhhhhhhhehhh------------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc-----ccCCceeEEEcCCc-
Confidence 46788888887773 4899999999999999999999999999999999 9999 9 9988732
Q ss_pred ceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhcccccccccccc--chhhHHHHHHhhhcc-CCCChHHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN--FVIFVVDGLAVLKSM-EGDSDVEKQY 223 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~--~~~tv~eni~~~~~~-~~~~~~~~~~ 223 (317)
++ .++++||+..++. ..+|+.+|+ ++... ..... .++
T Consensus 178 ------------------------------~~-------~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~--~~~ 217 (460)
T 2npi_A 178 ------------------------------QQ-------PIFTVPGCISATPISDILDAQLPT-WGQSLTSGATL--LHN 217 (460)
T ss_dssp ------------------------------TS-------CSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCS--SCC
T ss_pred ------------------------------cC-------Ceeeeccchhhcccccccchhhhh-cccccccCcch--HHH
Confidence 11 2788888765433 235777777 54321 11000 011
Q ss_pred HHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccce--eccccce----eeccC-CCC-CCHHHHHHHHHH
Q 021147 224 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGEL--LGIPPAK----QIFDI-PES-SDPENELIIVDM 295 (317)
Q Consensus 224 ~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iara--l~~~p~i----lIlDE-Pts-LD~~t~~~l~~~ 295 (317)
+..+++.+++.... . . .+|||||+||+++||| |+.+|++ +|||| ||+ ||+. ...+.++
T Consensus 218 ~~~ll~~~gl~~~~---~--~--------~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l 283 (460)
T 2npi_A 218 KQPMVKNFGLERIN---E--N--------KDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHI 283 (460)
T ss_dssp BCCEECCCCSSSGG---G--C--------HHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHH
T ss_pred HHHHHHHhCCCccc---c--h--------hhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHH
Confidence 22334444432111 1 2 6899999999999999 9999999 99999 999 9999 6666666
Q ss_pred HHH
Q 021147 296 LRY 298 (317)
Q Consensus 296 l~~ 298 (317)
+++
T Consensus 284 ~~~ 286 (460)
T 2npi_A 284 IEK 286 (460)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 63
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.88 E-value=8.4e-24 Score=204.62 Aligned_cols=61 Identities=8% Similarity=0.056 Sum_probs=51.3
Q ss_pred CcHHHHHhhcccceecccc--ceeeccCCCC-CCHHHHHHHHHHHHHHHH-----hcCCCcchhhcccCC
Q 021147 255 LTDRARIRTYLGELLGIPP--AKQIFDIPES-SDPENELIIVDMLRYCLE-----HADRNLSCKSCARNK 316 (317)
Q Consensus 255 LSgG~~qRl~iaral~~~p--~ilIlDEPts-LD~~t~~~l~~~l~~l~~-----~~~~~~~~~~~~~~~ 316 (317)
|||||+||++||++++.+| +++||||||+ ||+.+...+.+.|+++.+ ...|+...+ ..+||
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~ 364 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHH 364 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCe
Confidence 6999999999999999999 9999999999 999999999999999852 144555444 34565
No 64
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.88 E-value=9.5e-23 Score=214.51 Aligned_cols=101 Identities=17% Similarity=0.209 Sum_probs=73.7
Q ss_pred hhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceecccc---ceee
Q 021147 201 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPP---AKQI 277 (317)
Q Consensus 201 ~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p---~ilI 277 (317)
+|+.+++.+... .. ...+..++++.+++.... .+.+. .+|||||+||++|||+|+.+| +++|
T Consensus 807 ltv~e~l~~~~~----~~-~~~~~~~~L~~~gL~~~~--l~~~~--------~~LSGGekQRv~LAraL~~~p~~p~lLI 871 (972)
T 2r6f_A 807 MTVEDALDFFAS----IP-KIKRKLETLYDVGLGYMK--LGQPA--------TTLSGGEAQRVKLAAELHRRSNGRTLYI 871 (972)
T ss_dssp SBHHHHHHHTCS----CH-HHHHHHHHHHHTTCSSSB--TTCCG--------GGCCHHHHHHHHHHHHHSSCCCSCEEEE
T ss_pred cCHHHHHHHHhc----ch-hHHHHHHHHHHcCCCccc--ccCch--------hhCCHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 456666654321 11 223456788888874211 13344 799999999999999999764 9999
Q ss_pred ccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 278 FDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 278 lDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
|||||+ ||+.+...+.+.|+++.+. ..|++..+. .+|||
T Consensus 872 LDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~aDrI 917 (972)
T 2r6f_A 872 LDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYI 917 (972)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-hCCEE
Confidence 999999 9999999999999998653 567777654 57764
No 65
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.88 E-value=2.8e-23 Score=219.10 Aligned_cols=102 Identities=18% Similarity=0.181 Sum_probs=77.0
Q ss_pred hhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceecccc---cee
Q 021147 200 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPP---AKQ 276 (317)
Q Consensus 200 ~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p---~il 276 (317)
.+|+.+++.+... .....+..++++.+++.... .+.+. .+|||||+||++|||+|+++| +++
T Consensus 766 ~~tv~eal~f~~~-----~~~~~~~~~~L~~vGL~~~~--lgq~~--------~~LSGGErQRV~LAraL~~~p~~p~LL 830 (916)
T 3pih_A 766 DMTVDEALEFFKN-----IPSIKRTLQVLHDVGLGYVK--LGQPA--------TTLSGGEAQRIKLASELRKRDTGRTLY 830 (916)
T ss_dssp SSBHHHHHHHTTT-----CHHHHHHHHHHHHTTGGGSB--TTCCS--------TTCCHHHHHHHHHHHHHTSCCCSSEEE
T ss_pred hCCHHHHHHHHhc-----chhHHHHHHHHHHcCCchhh--ccCCc--------cCCCHHHHHHHHHHHHHhhCCCCCCEE
Confidence 3577888776432 12334567788888873211 13444 799999999999999999765 799
Q ss_pred eccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 277 IFDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 277 IlDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
||||||+ ||+.++..+.+.|+++.+. ..|++..+.. +|+|
T Consensus 831 ILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-ADrI 877 (916)
T 3pih_A 831 ILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-ADHI 877 (916)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEE
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEE
Confidence 9999999 9999999999999998653 5677777655 7764
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.87 E-value=3.2e-22 Score=211.17 Aligned_cols=210 Identities=15% Similarity=0.115 Sum_probs=128.1
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHh-hcc----cCCCCCCcCcEE-EECc
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS-KVF----ENDKFASERAQV-TYNS 143 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~-Gl~----~p~~~~p~~G~I-~i~g 143 (317)
+.|+++|++. . . |+||||+|++|+++||+|+||||||||+++|. |.+ .+. .+..|.+ .+.|
T Consensus 646 ~~L~v~~l~~-----~-~-----Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~--~~~~G~~~~i~G 712 (993)
T 2ygr_A 646 RQLTVVGARE-----H-N-----LRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGA--RQVPGRHTRVTG 712 (993)
T ss_dssp SEEEEEEECS-----T-T-----CCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCC--CCCCCSEEEECC
T ss_pred ceEEEecCcc-----c-c-----ccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCC--cCCCCceeeecC
Confidence 5799999862 1 2 99999999999999999999999999999853 332 210 0234543 4555
Q ss_pred ccC--ceeeEecccCCCCcccccceeeccCCh-------HHHHHHHHH--hhhhcccccccccc----------------
Q 021147 144 SVG--DGTYFLQEYTIPRGVRHGELVIRRSDS-------SSLRNRMRC--KAHKIGCEPSVIRK---------------- 196 (317)
Q Consensus 144 ~~~--~~~~~~Q~~~l~~~~~~~~~~~~~~~~-------~~~r~~~~~--~~~~ig~v~Q~~~~---------------- 196 (317)
.+. .+-++.|.+.-. + ...++ +.+++.... ..+..||++|...+
T Consensus 713 ~~~~~~~i~idq~pig~-~--------~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~ 783 (993)
T 2ygr_A 713 LDYLDKLVRIDQSPIGR-T--------PRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTI 783 (993)
T ss_dssp CTTCSEEECCCCSCSCS-S--------TTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEE
T ss_pred ccccceEEEecCccccc-C--------cccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccce
Confidence 321 112233322100 0 00011 011111100 01235666663210
Q ss_pred -----c-c-------------------------------chhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCC
Q 021147 197 -----V-N-------------------------------FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFR 239 (317)
Q Consensus 197 -----~-~-------------------------------~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~ 239 (317)
| + ..+|+.+++.+... .. ...+..++++.+++....
T Consensus 784 ~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~----~~-~~~~~~~~L~~lgL~~~~-- 856 (993)
T 2ygr_A 784 KIEMNFLPDVYVPCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP----IA-GVHRYLRTLVDVGLGYVR-- 856 (993)
T ss_dssp EECCTTSCCEEEECTTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT----CH-HHHHHHHHHHHTTGGGSB--
T ss_pred eehhhccccceeeehhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc----ch-HHHHHHHHHHHcCCCccc--
Confidence 0 0 02355555554321 11 223456778888873211
Q ss_pred CCCCEEEEeccchhcCcHHHHHhhcccceeccc---cceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcch
Q 021147 240 DDKPVVVVTHGDLLSLTDRARIRTYLGELLGIP---PAKQIFDIPES-SDPENELIIVDMLRYCLEH------ADRNLSC 309 (317)
Q Consensus 240 ~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~---p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~ 309 (317)
.+.+. .+|||||+||++||++|+.+ |+++||||||+ ||+.+...+.+.|+++.+. ..|++..
T Consensus 857 l~~~~--------~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~ 928 (993)
T 2ygr_A 857 LGQPA--------PTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDV 928 (993)
T ss_dssp TTCCG--------GGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred ccCcc--------ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence 13344 79999999999999999986 49999999999 9999999999999998653 5677776
Q ss_pred hhcccCCC
Q 021147 310 KSCARNKV 317 (317)
Q Consensus 310 ~~~~~~~~ 317 (317)
+. .+|||
T Consensus 929 i~-~aDrI 935 (993)
T 2ygr_A 929 IK-TSDWI 935 (993)
T ss_dssp HT-TCSEE
T ss_pred HH-hCCEE
Confidence 63 57764
No 67
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.86 E-value=2.9e-24 Score=202.31 Aligned_cols=165 Identities=10% Similarity=-0.063 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHcccccccc-----CCCCceEEEeEEEEcCCCCccccccCceeeeeE-----------------------
Q 021147 48 RRRDAVFREVLQSYDQLRT-----RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYD----------------------- 99 (317)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~-----~~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~----------------------- 99 (317)
+.+|.++++.+..+..... .....|+++||++.|. +. ++++++.
T Consensus 15 r~~~~~l~~~~~~~~~~~~~~~l~~~~~~i~~~~v~~~y~---p~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (312)
T 3aez_A 15 RRQWRALRMSTPLALTEEELVGLRGLGEQIDLLEVEEVYL---PL-----ARLIHLQVAARQRLFAATAEFLGEPQQNPD 86 (312)
T ss_dssp HHHHHGGGTTCCCCCCHHHHHTTCCTTCCCCHHHHHHTHH---HH-----HHHHHHHHHHHHHHHHHHHHHTTCCCCCSS
T ss_pred HHHHHHHHhcCCCCCCHHHHHhccCCCCeEEeeehhhhhh---hH-----HHHHHHHHhhhhHHHHHHHHhhcccccccC
Confidence 4666666665443322111 2345799999999994 22 5666654
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHH
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNR 179 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~ 179 (317)
+++|+++||+||||||||||+++|+|+++ |+.|. ..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~-----~~~G~-------~~-------------------------------- 122 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA-----RWDHH-------PR-------------------------------- 122 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH-----TSTTC-------CC--------------------------------
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc-----ccCCC-------Ce--------------------------------
Confidence 89999999999999999999999999999 76552 12
Q ss_pred HHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHH
Q 021147 180 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRA 259 (317)
Q Consensus 180 ~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~ 259 (317)
+++++|+..+++. |+.+|+.+...+........+.+.+.++.++.. .. .... ..||+||
T Consensus 123 -------v~~v~qd~~~~~~--t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~---~~-~~~~--------~~lS~G~ 181 (312)
T 3aez_A 123 -------VDLVTTDGFLYPN--AELQRRNLMHRKGFPESYNRRALMRFVTSVKSG---SD-YACA--------PVYSHLH 181 (312)
T ss_dssp -------EEEEEGGGGBCCH--HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTT---CS-CEEE--------EEEETTT
T ss_pred -------EEEEecCccCCcc--cHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCC---cc-cCCc--------ccCChhh
Confidence 5666666544432 666766543211111112234456666665521 11 1223 5899999
Q ss_pred HHhhcccceeccccceeeccCCCC-CC
Q 021147 260 RIRTYLGELLGIPPAKQIFDIPES-SD 285 (317)
Q Consensus 260 ~qRl~iaral~~~p~ilIlDEPts-LD 285 (317)
+||+++|++++.+|+++|+|||+. +|
T Consensus 182 ~qRv~~a~al~~~p~ilIlDep~~~~d 208 (312)
T 3aez_A 182 YDIIPGAEQVVRHPDILILEGLNVLQT 208 (312)
T ss_dssp TEEEEEEEEEECSCSEEEEECTTTTCC
T ss_pred hhhhhhHHHhccCCCEEEECCccccCC
Confidence 999999999999999999999999 86
No 68
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.86 E-value=2.7e-24 Score=192.01 Aligned_cols=156 Identities=11% Similarity=0.051 Sum_probs=94.3
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.+ +....
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~------p--G~i~~-g~~----------------------~~~~~ 61 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF------P--NYFYF-SVS----------------------CTTRK 61 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHS------T--TTEEE-CCC----------------------EECSC
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC------C--CcEEE-eec----------------------ccCCC
Confidence 99999999999999999999999999999999986 4 88888 654 11111
Q ss_pred h-HHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccc
Q 021147 173 S-SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGD 251 (317)
Q Consensus 173 ~-~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~ 251 (317)
. ...+ ..++|++|++.+|.......+++..+.............+.++++... .+ +..
T Consensus 62 ~~~~~~-------~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~----------~~-il~--- 120 (218)
T 1z6g_A 62 KREKEK-------EGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNK----------IC-LFE--- 120 (218)
T ss_dssp CCSSCC-------BTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTC----------EE-EEE---
T ss_pred CCcccc-------cCCeEEECCHHHHHHhhhccchhhhhhcccccCCCcHHHHHHHHhCCC----------cE-EEE---
Confidence 0 0011 127888887765432110111221110000000001123444444321 11 111
Q ss_pred hhcCcHHHHHhhcc-----cceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 252 LLSLTDRARIRTYL-----GELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 252 ~~~LSgG~~qRl~i-----aral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
..|||||+||+++ +|+++..|++++||||++ +|..++..+.+.+.++.+
T Consensus 121 -~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 121 -MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp -ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred -ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4799999999999 899999999999999999 999999999988877643
No 69
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.85 E-value=2e-22 Score=173.03 Aligned_cols=49 Identities=10% Similarity=0.123 Sum_probs=42.6
Q ss_pred cCcHHHHHhhcccceeccccceeeccCCCC-CCHHH----------------HHHHHHHHHHHHHh
Q 021147 254 SLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPEN----------------ELIIVDMLRYCLEH 302 (317)
Q Consensus 254 ~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t----------------~~~l~~~l~~l~~~ 302 (317)
..|+|++||+++|||+..+|++++|||||+ ||+.+ ...+.+.++++.+.
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~ 148 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE 148 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc
Confidence 569999999999999999999999999999 99994 47777777766543
No 70
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.83 E-value=1.8e-23 Score=185.99 Aligned_cols=126 Identities=15% Similarity=0.159 Sum_probs=83.1
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
|++| ++|++++|+||||||||||+|+|+|+ + |++|+|.. .+ +.. +
T Consensus 16 l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~-----p~~G~I~~--~~----------------------~~~-~ 60 (208)
T 3b85_A 16 VDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A-----LQSKQVSR--II----------------------LTR-P 60 (208)
T ss_dssp HHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H-----HHTTSCSE--EE----------------------EEE-C
T ss_pred HHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C-----CcCCeeee--EE----------------------ecC-C
Confidence 8885 89999999999999999999999999 9 99999842 11 110 1
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHH-Hhhh----ccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEE
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGL-AVLK----SMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVV 247 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni-~~~~----~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~ 247 (317)
...+++ .+||+||++ .+|+ .+.. ....... .+++.++++. +
T Consensus 61 ~~~~~~-------~ig~v~q~~---------~enl~~~~~~~~~~~~~~~~--~~~~~~~l~~-g--------------- 106 (208)
T 3b85_A 61 AVEAGE-------KLGFLPGTL---------NEKIDPYLRPLHDALRDMVE--PEVIPKLMEA-G--------------- 106 (208)
T ss_dssp SCCTTC-------CCCSSCC---------------CTTTHHHHHHHTTTSC--TTHHHHHHHT-T---------------
T ss_pred chhhhc-------ceEEecCCH---------HHHHHHHHHHHHHHHHHhcc--HHHHHHHHHh-C---------------
Confidence 111122 399999975 3343 2210 0000000 0112222221 1
Q ss_pred eccchhcCcHHHHHhhcccceeccccceeeccCCCCCCHHHHHHHHHHHHHH
Q 021147 248 THGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYC 299 (317)
Q Consensus 248 ~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPtsLD~~t~~~l~~~l~~l 299 (317)
| ||+||+++||||+.+|+++||||||+ . ++..+.+.|+++
T Consensus 107 -------l--Gq~qrv~lAraL~~~p~lllLDEPts--~-~~~~l~~~l~~l 146 (208)
T 3b85_A 107 -------I--VEVAPLAYMRGRTLNDAFVILDEAQN--T-TPAQMKMFLTRL 146 (208)
T ss_dssp -------S--EEEEEGGGGTTCCBCSEEEEECSGGG--C-CHHHHHHHHTTB
T ss_pred -------C--chHHHHHHHHHHhcCCCEEEEeCCcc--c-cHHHHHHHHHHh
Confidence 1 89999999999999999999999999 4 788888887775
No 71
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.83 E-value=4.7e-23 Score=200.73 Aligned_cols=142 Identities=10% Similarity=0.057 Sum_probs=109.0
Q ss_pred ceeeeeEecCCC--------------------EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEe
Q 021147 93 MTLSDYDVPKTT--------------------SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 152 (317)
Q Consensus 93 L~~isl~I~~Ge--------------------~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~ 152 (317)
|++|||+|++|+ ++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 39 l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~-----p~~GsI~~~g~~~------ 107 (413)
T 1tq4_A 39 LNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN-----EEEGAAKTGVVEV------ 107 (413)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT-----TSTTSCCCCC---------
T ss_pred hhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC-----ccCceEEECCeec------
Confidence 999999999999 999999999999999999999999 9999999887641
Q ss_pred cccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcC
Q 021147 153 QEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFN 232 (317)
Q Consensus 153 Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~ 232 (317)
. + .++++|++. ...+|++||+.++.. .. ++.++++.++
T Consensus 108 ----------------t---------~-------~~~v~q~~~--~~~ltv~D~~g~~~~---~~-----~~~~~L~~~~ 145 (413)
T 1tq4_A 108 ----------------T---------M-------ERHPYKHPN--IPNVVFWDLPGIGST---NF-----PPDTYLEKMK 145 (413)
T ss_dssp --------------------------C-------CCEEEECSS--CTTEEEEECCCGGGS---SC-----CHHHHHHHTT
T ss_pred ----------------c---------e-------eEEeccccc--cCCeeehHhhcccch---HH-----HHHHHHHHcC
Confidence 0 0 245555531 223466666554321 11 2567777777
Q ss_pred CCcccCCCCCCEEEEeccchhcCcHH--HHHhhcccceecc----------ccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 233 CPYLSFRDDKPVVVVTHGDLLSLTDR--ARIRTYLGELLGI----------PPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 233 l~~~~l~~~~~~~i~~hg~~~~LSgG--~~qRl~iaral~~----------~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
+... .... .||+| |+||+++|+++.. +|++++|||||+ ||+.++..+.+.++++
T Consensus 146 L~~~----~~~~---------~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l 212 (413)
T 1tq4_A 146 FYEY----DFFI---------IISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLN 212 (413)
T ss_dssp GGGC----SEEE---------EEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred CCcc----CCeE---------EeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHH
Confidence 5211 1111 27888 9999999999999 999999999999 9999999999999988
Q ss_pred H
Q 021147 300 L 300 (317)
Q Consensus 300 ~ 300 (317)
.
T Consensus 213 ~ 213 (413)
T 1tq4_A 213 C 213 (413)
T ss_dssp H
T ss_pred H
Confidence 5
No 72
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.79 E-value=1.1e-19 Score=171.01 Aligned_cols=49 Identities=20% Similarity=0.134 Sum_probs=45.5
Q ss_pred hhcCcHHHHHhhcccceec----cccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 252 LLSLTDRARIRTYLGELLG----IPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~----~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+..||+||+||++||++++ .+|+++||||||+ ||+.+...+.+.++++.
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~ 270 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS 270 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Confidence 3689999999999999997 6889999999999 99999999999999873
No 73
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.78 E-value=1e-20 Score=164.11 Aligned_cols=64 Identities=6% Similarity=-0.152 Sum_probs=52.5
Q ss_pred hcCcHHHHHhhcccce-----eccccceeeccC--CCC-CCHHHHHHHHHHHHHHHH------hcCCCcchhhcccCC
Q 021147 253 LSLTDRARIRTYLGEL-----LGIPPAKQIFDI--PES-SDPENELIIVDMLRYCLE------HADRNLSCKSCARNK 316 (317)
Q Consensus 253 ~~LSgG~~qRl~iara-----l~~~p~ilIlDE--Pts-LD~~t~~~l~~~l~~l~~------~~~~~~~~~~~~~~~ 316 (317)
..|||||+||+++||| ++.+|+++|||| |++ +|+.....+.+.+++... |..|+..++..+++|
T Consensus 75 ~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 75 VNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred cCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhc
Confidence 6899999999999996 999999999999 999 999999999888876311 114566677666665
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.78 E-value=1.8e-20 Score=175.68 Aligned_cols=145 Identities=13% Similarity=0.122 Sum_probs=99.2
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
++++||++++|++++|+||||||||||++.|+|++. |++|+|.++|.+ .....
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-----~~~g~V~l~g~d----------------------~~r~~ 142 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-----NEGTKVLMAAGD----------------------TFRAA 142 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEECCC----------------------CSCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-----HcCCeEEEEeec----------------------ccchh
Confidence 457899999999999999999999999999999999 999999999876 21110
Q ss_pred -hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccc
Q 021147 173 -SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGD 251 (317)
Q Consensus 173 -~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~ 251 (317)
.++++... ....|+|++|++..+.+..++++|+.++...... ..++..+++.. .. .. .
T Consensus 143 a~~ql~~~~--~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~~~~d--------~~lldt~gl~~--~~-~~--------~ 201 (302)
T 3b9q_A 143 ASDQLEIWA--ERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYD--------VVLCDTSGRLH--TN-YS--------L 201 (302)
T ss_dssp HHHHHHHHH--HHHTCEEECCC--CCCHHHHHHHHHHHHHHTTCS--------EEEECCCCCSS--CC-HH--------H
T ss_pred HHHHHHHHH--HhcCceEEEecCCccCHHHHHHHHHHHHHHcCCc--------chHHhcCCCCc--ch-hH--------H
Confidence 01111100 0124999999875133467899999765321110 01122233210 00 11 1
Q ss_pred hhcCcHHHHHhhcccceeccccc--eeeccCCCC-CCHHHH
Q 021147 252 LLSLTDRARIRTYLGELLGIPPA--KQIFDIPES-SDPENE 289 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~~~p~--ilIlDEPts-LD~~t~ 289 (317)
..+|| +||+++|||+..+|+ +++|| ||+ +|+.++
T Consensus 202 ~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~ 238 (302)
T 3b9q_A 202 MEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ 238 (302)
T ss_dssp HHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH
T ss_pred HHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH
Confidence 25788 889999999999999 99999 999 999865
No 75
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.78 E-value=3.4e-21 Score=177.77 Aligned_cols=127 Identities=14% Similarity=0.045 Sum_probs=74.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhh
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKA 184 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~ 184 (317)
.++|+||||||||||+|+|+|+.. |++|+|.++|++ +.... .+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~-----~~~G~i~~~g~~----------------------i~~~~---~~------- 46 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV-----SRKASSWNREEK----------------------IPKTV---EI------- 46 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------------------------------CCCCC---SC-------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-----CCCCccccCCcc----------------------cCcce---ee-------
Confidence 489999999999999999999999 999999999975 11100 11
Q ss_pred hhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhc
Q 021147 185 HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTY 264 (317)
Q Consensus 185 ~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~ 264 (317)
+.+++++|+..++ ..+||.||+.++........ .+.+...+.. ... .+.. .+||+||+||++
T Consensus 47 ~~i~~v~q~~~~~-~~ltv~d~~~~g~~~~~~~~--~~~i~~~~~~----~~~---~~~~--------~~LS~G~~qrv~ 108 (270)
T 3sop_A 47 KAIGHVIEEGGVK-MKLTVIDTPGFGDQINNENC--WEPIEKYINE----QYE---KFLK--------EEVNIARKKRIP 108 (270)
T ss_dssp CEEEESCC----C-CEEEEECCCC--CCSBCTTC--SHHHHHHHHH----HHH---HHHH--------HHSCTTCCSSCC
T ss_pred eeeEEEeecCCCc-CCceEEechhhhhhcccHHH--HHHHHHHHHH----HHH---hhhH--------HhcCcccchhhh
Confidence 2389999987543 35789999887653222111 1122222221 000 1112 689999999999
Q ss_pred ccceeccccceeeccCCCC-CCHHHH
Q 021147 265 LGELLGIPPAKQIFDIPES-SDPENE 289 (317)
Q Consensus 265 iaral~~~p~ilIlDEPts-LD~~t~ 289 (317)
+|||++. ++++|||++ ||+...
T Consensus 109 iaRal~~---lllldep~~gL~~lD~ 131 (270)
T 3sop_A 109 DTRVHCC---LYFISPTGHSLRPLDL 131 (270)
T ss_dssp CCSCCEE---EEEECCCSSSCCHHHH
T ss_pred hheeeee---eEEEecCCCcCCHHHH
Confidence 9999875 999999999 999873
No 76
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.75 E-value=1.3e-18 Score=166.85 Aligned_cols=66 Identities=17% Similarity=0.022 Sum_probs=54.0
Q ss_pred chhcCcHHHHHhhcccceec------cccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 251 DLLSLTDRARIRTYLGELLG------IPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 251 ~~~~LSgG~~qRl~iaral~------~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
.+.+|||||+||++||||++ .+|+++||||||+ ||+.+...+.+.|+++.+. ..|++.. ...+|||
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d~~ 354 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFDRK 354 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCSCE
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCCEE
Confidence 34689999999999999999 7999999999999 9999999999999987532 4455554 3345653
No 77
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.74 E-value=7.7e-20 Score=179.49 Aligned_cols=165 Identities=10% Similarity=0.008 Sum_probs=115.8
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++++++|+++.|+.+..+ |+++ |+|.+|++++|+||||||||||+++|+|+++ |+.|.|.++|++..
T Consensus 130 ~~l~~~~v~~~~~tg~~v-----ld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~-----~~~G~i~~~G~r~~-- 196 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRA-----INAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR-----ADVIVVGLIGERGR-- 196 (438)
T ss_dssp CTTTSCCCCSBCCCSCHH-----HHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC-----CSEEEEEEESCCHH--
T ss_pred CceEEeccceecCCCceE-----Eeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC-----CCeEEEEEeceecH--
Confidence 579999999999744444 9999 9999999999999999999999999999999 99999999987300
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
.+..+..... ....+.+.++|++|+.......+++.+|+.+...+. +
T Consensus 197 -----------------ev~~~~~~~~--~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~--------------~ 243 (438)
T 2dpy_A 197 -----------------EVKDFIENIL--GPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDF--------------R 243 (438)
T ss_dssp -----------------HHHHHHHTTT--HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHH--------------H
T ss_pred -----------------HHHHHHHhhc--cccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHH--------------H
Confidence 0111000000 001122349999995433445678888887532110 0
Q ss_pred HcCCCcccCCCCCCEE-EEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 230 TFNCPYLSFRDDKPVV-VVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~-i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.- +..+. +.+. ..+||+|| ||+++| +.+|++ |+ ||+.+...+.++++++.+
T Consensus 244 ~~---------~~~v~~~ld~--l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~ 296 (438)
T 2dpy_A 244 DR---------GQHVLLIMDS--LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGN 296 (438)
T ss_dssp TT---------TCEEEEEEEC--HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSC
T ss_pred hC---------CCCHHHHHHh--HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHh
Confidence 00 11111 1122 37899999 889999 777877 88 999999999999988644
No 78
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.74 E-value=1.2e-19 Score=173.65 Aligned_cols=145 Identities=13% Similarity=0.123 Sum_probs=100.2
Q ss_pred eeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC-
Q 021147 94 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD- 172 (317)
Q Consensus 94 ~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~- 172 (317)
..+||++++|++++|+||||||||||++.|+|++. |++|+|.++|.+ .....
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-----~~~G~V~l~g~D----------------------~~r~~a 200 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-----NEGTKVLMAAGD----------------------TFRAAA 200 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEECCC----------------------CSCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc-----ccCCEEEEeccc----------------------ccccch
Confidence 46899999999999999999999999999999999 999999999876 21110
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccch
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDL 252 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~ 252 (317)
.++++... ....|+|++|++..+.+..++++|+.++.....+ ..++..+++.. .. .. ..
T Consensus 201 ~eql~~~~--~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~~~~d--------~~lldt~Gl~~--~~-~~--------~~ 259 (359)
T 2og2_A 201 SDQLEIWA--ERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYD--------VVLCDTSGRLH--TN-YS--------LM 259 (359)
T ss_dssp HHHHHHHH--HHHTCEEECCSSSSCCHHHHHHHHHHHHHHTTCS--------EEEEECCCCSS--CC-HH--------HH
T ss_pred hHHHHHHH--HhcCeEEEEecccccChhhhHHHHHHHHHhCCCH--------HHHHHhcCCCh--hh-hh--------HH
Confidence 01111100 0124999999875134467899998765321110 01122233210 00 01 12
Q ss_pred hcCcHHHHHhhcccceeccccc--eeeccCCCC-CCHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGIPPA--KQIFDIPES-SDPENEL 290 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p~--ilIlDEPts-LD~~t~~ 290 (317)
.+|| +||+++||++..+|+ +++|| ||+ +|+.++.
T Consensus 260 ~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~ 296 (359)
T 2og2_A 260 EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA 296 (359)
T ss_dssp HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH
T ss_pred HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH
Confidence 5788 889999999999999 99999 999 9998653
No 79
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.72 E-value=4.8e-20 Score=174.70 Aligned_cols=48 Identities=15% Similarity=0.325 Sum_probs=45.7
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
++++||.+++|++++|+||||||||||+++|+|+++ |++|.|.++|.+
T Consensus 161 l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~-----~~~g~i~i~~~~ 208 (330)
T 2pt7_A 161 ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP-----KEERIISIEDTE 208 (330)
T ss_dssp HHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC-----TTSCEEEEESSC
T ss_pred HhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCcEEEECCee
Confidence 889999999999999999999999999999999999 999999988753
No 80
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.71 E-value=3.6e-20 Score=163.33 Aligned_cols=165 Identities=14% Similarity=0.101 Sum_probs=92.8
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
++| .+|++|++++|+||||||||||+|+|+|+++ . |.+++. +...+
T Consensus 12 ~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~-----~----i~~~~~-----------------------~~~~~ 57 (207)
T 1znw_A 12 ARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP-----N----LHFSVS-----------------------ATTRA 57 (207)
T ss_dssp ---------CCCEEEEECSTTSSHHHHHHHHHHHST-----T----CEECCC-----------------------EESSC
T ss_pred CCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC-----c----eEEccc-----------------------ccccC
Confidence 788 7999999999999999999999999999985 3 223221 10000
Q ss_pred h-HHHHHHHHHhhhhccccccccccccchhhHHHHHHhhh------ccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEE
Q 021147 173 S-SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK------SMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVV 245 (317)
Q Consensus 173 ~-~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~------~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~ 245 (317)
. ... .+.++|++|++..|. .+++.+|+.... ..... + .+.+.+.++... ..+
T Consensus 58 ~~~~~-------~~~i~~~~q~~~~~~-~~~~~~~l~~~~~~~~n~~~~g~-~--~~~~~~~~~~~~----------~~~ 116 (207)
T 1znw_A 58 PRPGE-------VDGVDYHFIDPTRFQ-QLIDQGELLEWAEIHGGLHRSGT-L--AQPVRAAAATGV----------PVL 116 (207)
T ss_dssp CCTTC-------CBTTTBEECCHHHHH-HHHHTTCEEEEEEEGGGTEEEEE-E--HHHHHHHHHHTC----------CEE
T ss_pred Ccccc-------cCCCeeEecCHHHHH-HHHhcCCceeehhhcCchhhcCC-c--HHHHHHHHHcCC----------eEE
Confidence 0 000 123889998876553 566666653211 00000 1 111222222210 000
Q ss_pred EEeccchhcCcHHHHHhhcccc---eeccccceeeccCCCC-C----CHHHHHHHHHHHHHHHHh-------cCCCcchh
Q 021147 246 VVTHGDLLSLTDRARIRTYLGE---LLGIPPAKQIFDIPES-S----DPENELIIVDMLRYCLEH-------ADRNLSCK 310 (317)
Q Consensus 246 i~~hg~~~~LSgG~~qRl~iar---al~~~p~ilIlDEPts-L----D~~t~~~l~~~l~~l~~~-------~~~~~~~~ 310 (317)
+. .++.|.+.++-...+ +++.+|++++||||++ + |+..+..+.+.++++.+. ..|++..+
T Consensus 117 ~~-----l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~ 191 (207)
T 1znw_A 117 IE-----VDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESA 191 (207)
T ss_dssp EE-----CCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHH
T ss_pred EE-----eCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHH
Confidence 00 123333333333333 8999999999999998 8 788999999999888642 45566666
Q ss_pred hcccCCC
Q 021147 311 SCARNKV 317 (317)
Q Consensus 311 ~~~~~~~ 317 (317)
...+|||
T Consensus 192 ~~~~d~i 198 (207)
T 1znw_A 192 CAELVSL 198 (207)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666653
No 81
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.70 E-value=9.8e-19 Score=152.52 Aligned_cols=188 Identities=10% Similarity=-0.027 Sum_probs=96.5
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||+|.|+. .+ +++ |.+++|..++|+|+||||||||++.|+|........|+.|.+.+.+.-
T Consensus 3 ~l~~~~~~~~~~~--~~-----l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~----- 68 (210)
T 1pui_A 3 NLNYQQTHFVMSA--PD-----IRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLF----- 68 (210)
T ss_dssp --------CEEEE--SS-----GGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEE-----
T ss_pred chhhhhhhheeec--CC-----HhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEE-----
Confidence 6899999999962 23 777 999999999999999999999999999998100001777876542210
Q ss_pred Eecc-cCCCCccccccee---eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHH
Q 021147 151 FLQE-YTIPRGVRHGELV---IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 226 (317)
Q Consensus 151 ~~Q~-~~l~~~~~~~~~~---~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~ 226 (317)
...+ ..+. ...+.. ........+++. +++.+|....... ..+..++. ...+....++..
T Consensus 69 ~~~~~~~l~---Dt~G~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~v~d~~------~~~~~~~~~~~~ 131 (210)
T 1pui_A 69 EVADGKRLV---DLPGYGYAEVPEEMKRKWQRA-------LGEYLEKRQSLQG-LVVLMDIR------HPLKDLDQQMIE 131 (210)
T ss_dssp EEETTEEEE---ECCCCC------CCHHHHHHH-------HHHHHHHCTTEEE-EEEEEETT------SCCCHHHHHHHH
T ss_pred EecCCEEEE---ECcCCcccccCHHHHHHHHHH-------HHHHHHhhhcccE-EEEEEECC------CCCchhHHHHHH
Confidence 0000 0000 000000 000111223333 3333322111110 00001110 011122223444
Q ss_pred HHHHcCCCcccCCCCCCEE-EEeccchhcCcHHHHHh-hcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 227 VATTFNCPYLSFRDDKPVV-VVTHGDLLSLTDRARIR-TYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~-i~~hg~~~~LSgG~~qR-l~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
.+...+ .+.+ +.+.- ..+|+|++|| +..+++++.+|..+++|||+| +|+.+...+.+.|.++.
T Consensus 132 ~~~~~~---------~~~~~v~nK~--D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 132 WAVDSN---------IAVLVLLTKA--DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp HHHHTT---------CCEEEEEECG--GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHcC---------CCeEEEEecc--cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 444433 3333 34443 4789999998 789999999999999999999 99999999999988865
No 82
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.66 E-value=2.6e-17 Score=141.94 Aligned_cols=136 Identities=15% Similarity=0.097 Sum_probs=86.5
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcccCCCCCCc---CcEEEECcccCceeeEecccCCCCcccccceeeccCC---hHHHH
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD---SSSLR 177 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~---~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~---~~~~r 177 (317)
++++|+|+||||||||+++|+|+++ |+ .|.|.++|.+ +..++ .+.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~-----~~g~~~G~I~~dg~~----------------------i~~~~~~~~d~~r 55 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR-----ERGLRVAVVKRHAHG----------------------DFEIDKEGKDSWK 55 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH-----HTTCCEEEEEC----------------------------------CHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh-----hcCCceEEEEEcCcc----------------------cccCCccchhHHH
Confidence 5899999999999999999999999 87 8999999976 33333 44555
Q ss_pred -HHHHHhhhhcc----ccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccch
Q 021147 178 -NRMRCKAHKIG----CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDL 252 (317)
Q Consensus 178 -~~~~~~~~~ig----~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~ 252 (317)
++ +| +++|++.+|.. + . .......+.+.++. .++ ++++++++.
T Consensus 56 ~~~-------ig~~~~~~~~~~~~~i~-----~---------~-~~~~~a~l~~~i~~------~l~-g~dt~i~Eg--- 103 (171)
T 2f1r_A 56 IYN-------SGADVVIASPVKLAFIR-----R---------V-SEEEGNDLDWIYER------YLS-DYDLVITEG--- 103 (171)
T ss_dssp HHH-------HTCEEEEECSSEEEEEE-----E---------C-CHHHHTCHHHHHHH------HTT-TCSEEEEES---
T ss_pred HHh-------cCCceEEECCCcEEEEe-----c---------C-ChhhhhCHHHHHHh------hCC-CCCEEEECC---
Confidence 24 77 78887754411 0 0 01000012222221 045 799999983
Q ss_pred hcCcHHHHHhhcccceeccccceee-------ccCCC---C-CCHHHHHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGIPPAKQI-------FDIPE---S-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p~ilI-------lDEPt---s-LD~~t~~~l~~~l~~l~ 300 (317)
|||||+||+++|||++.+|++.- -|.|. - +|......+.+.+.+..
T Consensus 104 --lSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~ 160 (171)
T 2f1r_A 104 --FSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLL 160 (171)
T ss_dssp --CGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHH
T ss_pred --cCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHH
Confidence 99999999999999999998742 23331 2 44455566777765543
No 83
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.66 E-value=3.2e-17 Score=148.07 Aligned_cols=131 Identities=12% Similarity=0.025 Sum_probs=78.1
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
|+|+||++++|+++||+||||||||||+++|+|++. . +.++.
T Consensus 15 l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG-----~----~~~~~----------------------------- 56 (245)
T 2jeo_A 15 TENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG-----Q----NEVEQ----------------------------- 56 (245)
T ss_dssp --------CCSEEEEEECSTTSSHHHHHHHHHHHHT-----G----GGSCG-----------------------------
T ss_pred ecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc-----h----hcccc-----------------------------
Confidence 999999999999999999999999999999999864 1 11110
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-cCCCCh--HHHHHHHHHHHHcCCCcccCCCCCCEEEEec
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-MEGDSD--VEKQYNQIVATTFNCPYLSFRDDKPVVVVTH 249 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~~~~~~--~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~h 249 (317)
. .+.+++++|+. +...+|+.+++.+... +....+ ...+++.+.++.+.- +.....
T Consensus 57 ---~-------~~~i~~v~~d~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~-----~~~~~~----- 114 (245)
T 2jeo_A 57 ---R-------QRKVVILSQDR--FYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVE-----GKTVEV----- 114 (245)
T ss_dssp ---G-------GCSEEEEEGGG--GBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHHHT-----TCCEEE-----
T ss_pred ---c-------CCceEEEeCCc--CccccCHhHhhhhhccCCCCCCcccccHHHHHHHHHHHHC-----CCCeec-----
Confidence 0 11266777664 3334566666654321 111111 112233444443210 112223
Q ss_pred cchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHH
Q 021147 250 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPE 287 (317)
Q Consensus 250 g~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~ 287 (317)
..||+|++||+++ ++++.+|+++|+|+|.. .+..
T Consensus 115 ---~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~ 149 (245)
T 2jeo_A 115 ---PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE 149 (245)
T ss_dssp ---CCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred ---ccccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence 5899999999988 68889999999999998 6654
No 84
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.65 E-value=1.6e-18 Score=159.15 Aligned_cols=65 Identities=18% Similarity=0.193 Sum_probs=53.1
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCc-CcEEEECcccCcee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSSVGDGT 149 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~-~G~I~i~g~~~~~~ 149 (317)
.+++++|++. .+ |+++| +++|++++|+||||||||||+++|+|+++ |+ +|+|.++|.+ +.
T Consensus 5 ~~~l~~l~~~-----~v-----l~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~-----~~~~G~I~~~g~~--i~ 65 (261)
T 2eyu_A 5 IPEFKKLGLP-----DK-----VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-----QTKSYHIITIEDP--IE 65 (261)
T ss_dssp -CCGGGSSCC-----TH-----HHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH-----HHCCCEEEEEESS--CC
T ss_pred CCChHHCCCH-----HH-----HHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC-----CCCCCEEEEcCCc--ce
Confidence 4566677642 23 99999 99999999999999999999999999999 88 9999999976 34
Q ss_pred eEecc
Q 021147 150 YFLQE 154 (317)
Q Consensus 150 ~~~Q~ 154 (317)
|++|.
T Consensus 66 ~~~~~ 70 (261)
T 2eyu_A 66 YVFKH 70 (261)
T ss_dssp SCCCC
T ss_pred eecCC
Confidence 55543
No 85
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.64 E-value=2.2e-16 Score=168.77 Aligned_cols=152 Identities=11% Similarity=0.073 Sum_probs=101.8
Q ss_pred CCceEEEe-----EEEEcCCCCccccccCceeeeeEecC-------CCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcC
Q 021147 69 GSLTDAKN-----KILSYTPGAWIENVGGMTLSDYDVPK-------TTSLLLIGPKGSGKSSLVNRISKVFENDKFASER 136 (317)
Q Consensus 69 ~~~I~~~n-----ls~~y~~~~~~~~~~~L~~isl~I~~-------Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~ 136 (317)
.++|+++| |++.|.+...+ ++|+||++++ |++++|+||||||||||+|+| |++. +.
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v-----~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~-----~~- 815 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFI-----PNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA-----VM- 815 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCC-----CEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH-----HH-
T ss_pred CceEEEEeccccEEEEEecCCceE-----eeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH-----HH-
Confidence 45799999 99999544444 9999999987 999999999999999999999 9987 21
Q ss_pred cEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhcc-ccccccccccchhhHHHHHHhhhccCC
Q 021147 137 AQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIG-CEPSVIRKVNFVIFVVDGLAVLKSMEG 215 (317)
Q Consensus 137 G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig-~v~Q~~~~~~~~~tv~eni~~~~~~~~ 215 (317)
. ++| ||||+.. .+++.+++.. .
T Consensus 816 -----------------------------------------a-------qiG~~Vpq~~~----~l~v~d~I~~--r--- 838 (1022)
T 2o8b_B 816 -----------------------------------------A-------QMGCYVPAEVC----RLTPIDRVFT--R--- 838 (1022)
T ss_dssp -----------------------------------------H-------TTTCCEESSEE----EECCCSBEEE--E---
T ss_pred -----------------------------------------h-------heeEEeccCcC----CCCHHHHHHH--H---
Confidence 1 166 7787652 2344444421 0
Q ss_pred CChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHH-HHHH
Q 021147 216 DSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENE-LIIV 293 (317)
Q Consensus 216 ~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~-~~l~ 293 (317)
+++... +..+. ..+|+++++ +++|++++.+|+++|||||++ +|+... ..+.
T Consensus 839 ---------------ig~~d~-~~~~~----------stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~ 891 (1022)
T 2o8b_B 839 ---------------LGASDR-IMSGE----------STFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIAN 891 (1022)
T ss_dssp ---------------CC--------------------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHH
T ss_pred ---------------cCCHHH-Hhhch----------hhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHH
Confidence 111000 00011 467888876 999999999999999999999 999874 5567
Q ss_pred HHHHHHHHh-------cCCCcchhhcccCC
Q 021147 294 DMLRYCLEH-------ADRNLSCKSCARNK 316 (317)
Q Consensus 294 ~~l~~l~~~-------~~~~~~~~~~~~~~ 316 (317)
+.++.+.+. +.|.+..+..++|+
T Consensus 892 ~il~~L~~~~g~~vl~~TH~~el~~~~~d~ 921 (1022)
T 2o8b_B 892 AVVKELAETIKCRTLFSTHYHSLVEDYSQN 921 (1022)
T ss_dssp HHHHHHHHTSCCEEEEECCCHHHHHHTSSC
T ss_pred HHHHHHHhcCCCEEEEEeCCHHHHHHhCCc
Confidence 788777543 34555555555554
No 86
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.63 E-value=1.8e-15 Score=158.52 Aligned_cols=83 Identities=16% Similarity=0.147 Sum_probs=64.4
Q ss_pred HHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceecccc--ceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 224 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPP--AKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 224 ~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p--~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+.+.+..+++.... .+..+ .+|||||+|||+||++|..+| .++||||||+ ||+...+.+.+.++++.
T Consensus 359 rl~~L~~vGL~~l~--l~r~~--------~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~ 428 (842)
T 2vf7_A 359 RLDVLLHLGLGYLG--LDRST--------PTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLK 428 (842)
T ss_dssp HHHHHHHTTCTTSB--TTCBG--------GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCC--ccCCc--------CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHH
Confidence 34456677764221 14444 799999999999999999999 5999999999 99999999999999986
Q ss_pred Hh------cCCCcchhhcccCCC
Q 021147 301 EH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 301 ~~------~~~~~~~~~~~~~~~ 317 (317)
.. .+|++..+. .+|+|
T Consensus 429 ~~G~TVIvVeHdl~~l~-~aD~i 450 (842)
T 2vf7_A 429 RGGNSLFVVEHDLDVIR-RADWL 450 (842)
T ss_dssp TTTCEEEEECCCHHHHT-TCSEE
T ss_pred HcCCEEEEEcCCHHHHH-hCCEE
Confidence 43 566666553 46664
No 87
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.61 E-value=6.7e-17 Score=141.80 Aligned_cols=133 Identities=11% Similarity=0.078 Sum_probs=83.8
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHH
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRN 178 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~ 178 (317)
+.++|+++||+||||||||||+++|+|++. | .++|++|+..+++.
T Consensus 2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~~~~-----~------------~i~~v~~d~~~~~~------------------ 46 (211)
T 3asz_A 2 SAPKPFVIGIAGGTASGKTTLAQALARTLG-----E------------RVALLPMDHYYKDL------------------ 46 (211)
T ss_dssp ---CCEEEEEEESTTSSHHHHHHHHHHHHG-----G------------GEEEEEGGGCBCCC------------------
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHhC-----C------------CeEEEecCccccCc------------------
Confidence 357899999999999999999999999998 5 24556665433210
Q ss_pred HHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHH
Q 021147 179 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDR 258 (317)
Q Consensus 179 ~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG 258 (317)
..+++.++..+.. ........+++.++++.+++.... ..+. ..+|+|
T Consensus 47 --------------------~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~---~~~~--------~~~s~g 93 (211)
T 3asz_A 47 --------------------GHLPLEERLRVNY--DHPDAFDLALYLEHAQALLRGLPV---EMPV--------YDFRAY 93 (211)
T ss_dssp --------------------TTSCHHHHHHSCT--TSGGGBCHHHHHHHHHHHHTTCCE---EECC--------EETTTT
T ss_pred --------------------ccccHHHhcCCCC--CChhhhhHHHHHHHHHHHHcCCCc---CCCc--------ccCccc
Confidence 0112333322110 000011123455566665542111 0112 567877
Q ss_pred H----HHhhcccceeccccceeeccCCCC--------CCHHHHHHHHHHHHHH
Q 021147 259 A----RIRTYLGELLGIPPAKQIFDIPES--------SDPENELIIVDMLRYC 299 (317)
Q Consensus 259 ~----~qRl~iaral~~~p~ilIlDEPts--------LD~~t~~~l~~~l~~l 299 (317)
+ +||++++++++.+|+++++|||++ ||+..+..+...+.+.
T Consensus 94 ~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~ 146 (211)
T 3asz_A 94 TRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRD 146 (211)
T ss_dssp EECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHH
T ss_pred CCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHH
Confidence 5 478999999999999999999976 5888888888877765
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.61 E-value=1e-16 Score=160.31 Aligned_cols=64 Identities=14% Similarity=0.064 Sum_probs=52.4
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeee-EecCCCEEEEEcCCCChHHHHHHH--HhhcccCCCCCCcCcEEEECccc
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDY-DVPKTTSLLLIGPKGSGKSSLVNR--ISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl-~I~~Ge~vaIvG~SGsGKSTLlkl--L~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
+++.+++.+.+ .+..+ |++||| .|++|++++|+||||||||||+++ ++|+++ |++|.|+++|.+
T Consensus 12 ~~~~~~~~~~~-~g~~~-----Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-----~~~g~i~v~g~~ 78 (525)
T 1tf7_A 12 NSEHQAIAKMR-TMIEG-----FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-----FDEPGVFVTFEE 78 (525)
T ss_dssp --CCSSCCEEC-CCCTT-----HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESSS
T ss_pred Ccccccccccc-CCchh-----HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCCEEEEEEeC
Confidence 45555665433 33333 999999 999999999999999999999999 789999 899999998864
No 89
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.59 E-value=3.1e-16 Score=149.47 Aligned_cols=66 Identities=11% Similarity=0.013 Sum_probs=58.7
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
.++++++++++.|+.+..+ |+++ |+|.+|++++|+||||||||||+++|+|+.. |+.|.|.+.|++
T Consensus 43 ~~~i~~~~l~~~~~tg~~a-----ld~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~-----~~~g~i~~~G~~ 108 (347)
T 2obl_A 43 PDPLLRQVIDQPFILGVRA-----IDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS-----ADIIVLALIGER 108 (347)
T ss_dssp SCSTTCCCCCSEECCSCHH-----HHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC-----CSEEEEEEESCC
T ss_pred CCCeeecccceecCCCCEE-----EEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCEEEEEEeccc
Confidence 3578999999999744444 9999 9999999999999999999999999999999 999999988763
No 90
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.59 E-value=1.7e-16 Score=141.83 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=45.1
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeee--EecCCCEEEEEcCCCChHHHHHHHHh--hcccCCCCCCcCcEEEECcc
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDY--DVPKTTSLLLIGPKGSGKSSLVNRIS--KVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl--~I~~Ge~vaIvG~SGsGKSTLlklL~--Gl~~p~~~~p~~G~I~i~g~ 144 (317)
.++++++++..++. |+++ + .|++|++++|+||||||||||+++|+ |+.. +..|.+.+++.
T Consensus 5 ~~~~~~~i~tg~~~---------lD~~-l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~-----~~~~~~~~~~~ 68 (251)
T 2ehv_A 5 AYQPVRRVKSGIPG---------FDEL-IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE-----YGEPGVFVTLE 68 (251)
T ss_dssp ---CCCEECCSCTT---------TGGG-TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESS
T ss_pred cccccceeecCCHh---------HHHH-hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCeEEEEEcc
Confidence 35777777776643 3333 2 79999999999999999999999999 7756 66777776664
No 91
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.59 E-value=1.5e-16 Score=148.57 Aligned_cols=142 Identities=15% Similarity=0.116 Sum_probs=64.7
Q ss_pred EeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhc-ccCCCCCCcCcEEEECcccCceeeEec
Q 021147 75 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV-FENDKFASERAQVTYNSSVGDGTYFLQ 153 (317)
Q Consensus 75 ~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl-~~p~~~~p~~G~I~i~g~~~~~~~~~Q 153 (317)
+||++.|++.. + +++++|+| +|+|+||||||||+++|.|. .. |++| |.++|.+
T Consensus 2 ~~l~~~~~~~~-~-----l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~-----~~~g-i~~~g~~-------- 55 (301)
T 2qnr_A 2 SNLPNQVHRKS-V-----KKGFEFTL------MVVGESGLGKSTLINSLFLTDLY-----PERV-ISGAAEK-------- 55 (301)
T ss_dssp ----------------------CEEE------EEEEETTSSHHHHHHHHHC-----------------------------
T ss_pred CCCcceECCEE-E-----EcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc-----CCCC-cccCCcc--------
Confidence 47899997553 3 99999998 99999999999999999998 77 8888 8877754
Q ss_pred ccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCC
Q 021147 154 EYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNC 233 (317)
Q Consensus 154 ~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l 233 (317)
+.. . .. .. .+++++|.... ...++++|++.++........ -......+...+.
T Consensus 56 --------------~~~-t-~~-~~-------~~~~~~q~~~~-~~~ltv~Dt~g~~~~~~~~e~-~~~l~~~l~~~~~- 108 (301)
T 2qnr_A 56 --------------IER-T-VQ-IE-------ASTVEIEERGV-KLRLTVVDTPGYGDAINCRDC-FKTIISYIDEQFE- 108 (301)
T ss_dssp ---------------------------------CEEEEC---C-CEEEEEEEEC------------CTTHHHHHHHHHH-
T ss_pred --------------cCC-c-ce-Ee-------eEEEEecCCCc-ccCcchhhhhhhhhhcCcHHH-HHHHHHHHHHHHH-
Confidence 111 0 00 11 27777775432 234577777665432110000 0000111111100
Q ss_pred CcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC--CCHHHH
Q 021147 234 PYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES--SDPENE 289 (317)
Q Consensus 234 ~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts--LD~~t~ 289 (317)
.+ . .++|+|++||+.+|||++ ++++|||++ ||+...
T Consensus 109 -------~~-~--------~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~ 146 (301)
T 2qnr_A 109 -------RY-L--------HDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV 146 (301)
T ss_dssp -------HH-H--------HHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH
T ss_pred -------HH-H--------HHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH
Confidence 11 1 689999999999999985 999999974 999874
No 92
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.59 E-value=3.9e-16 Score=144.39 Aligned_cols=150 Identities=10% Similarity=-0.015 Sum_probs=87.6
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc-EEEECcccCceeeEecccCCCCcccccceeeccC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRS 171 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G-~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~ 171 (317)
|+++++.+++|++++|+||||||||||++.|+|.+. |.+| .|.+.+.+ .
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~-----~~~G~~v~~~~~e-------------------------~ 74 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG-----TAMGKKVGLAMLE-------------------------E 74 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH-----HTSCCCEEEEESS-------------------------S
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH-----HHcCCeEEEEeCc-------------------------C
Confidence 999999999999999999999999999999999999 8777 67654322 2
Q ss_pred ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH-cCCCcccCCCCCCEEEEecc
Q 021147 172 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT-FNCPYLSFRDDKPVVVVTHG 250 (317)
Q Consensus 172 ~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~-~~l~~~~l~~~~~~~i~~hg 250 (317)
+...+.++ +..+.+... .++.+++..+.. ..+...+++.. +.. ....+...-
T Consensus 75 ~~~~~~~r-------~~~~~~~~~-----~~~~~~l~~~~~-------~~~~~~~~~~~~l~~--------~~l~i~~~~ 127 (296)
T 1cr0_A 75 SVEETAED-------LIGLHNRVR-----LRQSDSLKREII-------ENGKFDQWFDELFGN--------DTFHLYDSF 127 (296)
T ss_dssp CHHHHHHH-------HHHHHTTCC-----GGGCHHHHHHHH-------HHTHHHHHHHHHHSS--------SCEEEECCC
T ss_pred CHHHHHHH-------HHHHHcCCC-----hhhccccccCCC-------CHHHHHHHHHHHhcc--------CCEEEECCC
Confidence 33334333 222222211 111222322110 00111122222 110 111111110
Q ss_pred chhcCcHHH-HHhhcccceeccccceeeccCCCC-CCH-------HHHHHHHHHHHHHHHh
Q 021147 251 DLLSLTDRA-RIRTYLGELLGIPPAKQIFDIPES-SDP-------ENELIIVDMLRYCLEH 302 (317)
Q Consensus 251 ~~~~LSgG~-~qRl~iaral~~~p~ilIlDEPts-LD~-------~t~~~l~~~l~~l~~~ 302 (317)
..+|.++ +||+. ++++..+|+++|+|||++ ++. .....+.+.|+++.+.
T Consensus 128 --~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~ 185 (296)
T 1cr0_A 128 --AEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKS 185 (296)
T ss_dssp --CSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2467776 66666 889999999999999999 643 4445667777776543
No 93
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.58 E-value=8.3e-17 Score=153.86 Aligned_cols=150 Identities=14% Similarity=0.112 Sum_probs=88.2
Q ss_pred ceeeeeEecC--CCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcC----cEEEECcccCceeeEecccCCCCcccccce
Q 021147 93 MTLSDYDVPK--TTSLLLIGPKGSGKSSLVNRISKVFENDKFASER----AQVTYNSSVGDGTYFLQEYTIPRGVRHGEL 166 (317)
Q Consensus 93 L~~isl~I~~--Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~----G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~ 166 (317)
.+.|+++|.+ |+.++|+||||||||||+|+|+|+++ |++ |+|+++++... .
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~-----~~~~~e~G~i~i~~~~~~------------------~ 214 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN-----TTSAWEYGREFVFEKLGG------------------D 214 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT-----CEEECCTTHHHHHHSSSS------------------C
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC-----CCcchhhHHHHHHhhcCC------------------C
Confidence 5679999999 99999999999999999999999999 888 87776421000 0
Q ss_pred eeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccC--CCCC
Q 021147 167 VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSF--RDDK 242 (317)
Q Consensus 167 ~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l--~~~~ 242 (317)
.. .+....+ .. |++++|++.++ ..++++|+.+++.. ....+........... .... ...+
T Consensus 215 ~~-~~~~~~~-~~-------I~~~~q~~~~~--~~t~~~nl~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 278 (365)
T 1lw7_A 215 EQ-AMQYSDY-PQ-------MALGHQRYIDY--AVRHSHKIAFIDTD-----FITTQAFCIQYEGKAHPFLDSMIKEYPF 278 (365)
T ss_dssp TT-SSCTTTH-HH-------HHHHHHHHHHH--HHHHCSSEEEESSC-----HHHHHHHHHHHHSCCCHHHHHHHHHSCC
T ss_pred cc-cCChhHH-HH-------HHHHHHHHHHH--HHhccCCEEEEeCC-----chHHHHHHHHHcCCCCHHHHHHHhhcCC
Confidence 01 1222223 23 77778876544 35788887654311 0011111111111100 0000 0123
Q ss_pred CEEEE--------eccchhcCcHHHHHhhccccee---cc--ccceeeccCCCC
Q 021147 243 PVVVV--------THGDLLSLTDRARIRTYLGELL---GI--PPAKQIFDIPES 283 (317)
Q Consensus 243 ~~~i~--------~hg~~~~LSgG~~qRl~iaral---~~--~p~ilIlDEPts 283 (317)
.+++. ..| ..+|+|++||.+++|++ .. +++++++|||+.
T Consensus 279 ~lllLdE~~~p~~~~g--~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~ 330 (365)
T 1lw7_A 279 DVTILLKNNTEWVDDG--LRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSY 330 (365)
T ss_dssp SEEEEEECCCC-------------CCSHHHHHHHHHHHHHGGGCCCEEEECSSH
T ss_pred CEEEECCCCCCcccCC--CcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCH
Confidence 33332 223 57899999999999999 66 899999999975
No 94
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.58 E-value=1.6e-16 Score=154.93 Aligned_cols=145 Identities=12% Similarity=0.077 Sum_probs=80.5
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++||++.|++.. + ++++||+| +|+|+||||||||+++|+|+.. +..| .+|..
T Consensus 9 ~~~l~~~~l~~~y~~~~-v-----l~~vsf~I------~lvG~sGaGKSTLln~L~g~~~-----~~~~---~~~~~--- 65 (418)
T 2qag_C 9 EGYVGFANLPNQVYRKS-V-----KRGFEFTL------MVVGESGLGKSTLINSLFLTDL-----YSPE---YPGPS--- 65 (418)
T ss_dssp ------CCCCCCTTTTT-C-----C-CCCEEE------EEECCTTSSHHHHHHHHTTCCC-----CCCC---CCSCC---
T ss_pred cCcEEEEecceeECCEE-E-----ecCCCEEE------EEECCCCCcHHHHHHHHhCCCC-----CCCC---CCCcc---
Confidence 35799999999997543 3 99999998 9999999999999999999987 4443 12211
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
+..... .....+++++|...++ ..+||+||+.++..... . .....+.
T Consensus 66 -------------------~~~~~t--------~~~~~i~~v~q~~~~~-~~Ltv~Dt~g~~~~~~~--~---~~~~~i~ 112 (418)
T 2qag_C 66 -------------------HRIKKT--------VQVEQSKVLIKEGGVQ-LLLTIVDTPGFGDAVDN--S---NCWQPVI 112 (418)
T ss_dssp ------------------------C--------CEEEEEECC------C-EEEEEEECC----------------CHHHH
T ss_pred -------------------cCCccc--------eeeeeEEEEEecCCcc-cceeeeechhhhhhccc--h---hhHHHHH
Confidence 000000 0011267777765433 24678888766532111 0 0011121
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccc---eeeccCCC-C-CCHHHH
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPA---KQIFDIPE-S-SDPENE 289 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~---ilIlDEPt-s-LD~~t~ 289 (317)
..+. ..++.+++||+++||+++.+|+ ++++|||| + ||+...
T Consensus 113 ~~i~--------------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~ 158 (418)
T 2qag_C 113 DYID--------------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI 158 (418)
T ss_dssp HHHH--------------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH
T ss_pred HHHH--------------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH
Confidence 1110 2456677889999999999999 99999999 6 998764
No 95
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.57 E-value=4.9e-17 Score=165.63 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=89.7
Q ss_pred ceEEEeEEEEcCCCCccccccCceee----------eeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCC-cCcEE
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLS----------DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQV 139 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~i----------sl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p-~~G~I 139 (317)
.++++||++.|++..... |+.+ +|+++. +|||||||||||||+++|+|++. | ++|.|
T Consensus 10 ~i~~~~l~~~~~~~~r~l----l~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~-----P~~sG~v 77 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPC----IDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVAL-----PRGSGIV 77 (608)
T ss_dssp ----------CHHHHHHH----HHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC------------C
T ss_pred hhhhhhhhHHHHHHHHHH----HHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCC-----CCCCCeE
Confidence 588999999996432110 3323 467765 99999999999999999999998 7 79999
Q ss_pred EECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChH
Q 021147 140 TYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 219 (317)
Q Consensus 140 ~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~ 219 (317)
+++|.+... ........++. .+||++|++.+++ ..+|.+|+.+..
T Consensus 78 t~~g~~i~~-------------------~~~~~~~~~~~-------~i~~v~Q~~~l~~-~~tv~e~i~~~~-------- 122 (608)
T 3szr_A 78 TRCPLVLKL-------------------KKLVNEDKWRG-------KVSYQDYEIEISD-ASEVEKEINKAQ-------- 122 (608)
T ss_dssp CCSCEEEEE-------------------EECSSSSCCEE-------EESCC---CCCCC-HHHHHTTHHHHH--------
T ss_pred EEcCEEEEE-------------------ecCCcccccee-------EEeeecccccCCC-HHHHHHHHHHHH--------
Confidence 999976210 01111112222 3999999887554 578988886432
Q ss_pred HHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCC------CC-CCHHHHHHH
Q 021147 220 EKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIP------ES-SDPENELII 292 (317)
Q Consensus 220 ~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEP------ts-LD~~t~~~l 292 (317)
..++.. + ..+| .+++.++.+....|+++++||| |+ ||+..+..+
T Consensus 123 ---------~~~~~~------~-----------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i 173 (608)
T 3szr_A 123 ---------NAIAGE------G-----------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKI 173 (608)
T ss_dssp ---------HHHHCS------S-----------SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHH
T ss_pred ---------HHhcCC------c-----------cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHH
Confidence 111110 0 1122 1346677777789999999999 99 999999999
Q ss_pred HHHHHHHHH
Q 021147 293 VDMLRYCLE 301 (317)
Q Consensus 293 ~~~l~~l~~ 301 (317)
.++++++..
T Consensus 174 ~~li~~~l~ 182 (608)
T 3szr_A 174 KTLIKKYIQ 182 (608)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999999754
No 96
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.56 E-value=2.2e-15 Score=144.27 Aligned_cols=49 Identities=10% Similarity=-0.020 Sum_probs=45.7
Q ss_pred chh-cCcHHHHHhhcccceec---------cccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 251 DLL-SLTDRARIRTYLGELLG---------IPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 251 ~~~-~LSgG~~qRl~iaral~---------~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
.+. .||+||+||+++|++|+ .+|+++|||||++ ||+..+..+.+.+.++
T Consensus 261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~ 320 (359)
T 2o5v_A 261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV 320 (359)
T ss_dssp EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS
T ss_pred chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc
Confidence 345 79999999999999999 8999999999999 9999999999999875
No 97
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.55 E-value=8e-16 Score=153.92 Aligned_cols=48 Identities=15% Similarity=0.145 Sum_probs=44.5
Q ss_pred hcCcHHHHHhhcccceeccccceeeccCCCC-CCHH-----HHHHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPE-----NELIIVDMLRYCLE 301 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~-----t~~~l~~~l~~l~~ 301 (317)
..||+||+||+++|+++..+|+++|+| |++ ||.. .+..+.++++.+.+
T Consensus 352 ~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~ 405 (525)
T 1tf7_A 352 ESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ 405 (525)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999 999 9999 88999888888754
No 98
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.54 E-value=3e-15 Score=140.20 Aligned_cols=127 Identities=14% Similarity=0.186 Sum_probs=80.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC-hHHHHHHH
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD-SSSLRNRM 180 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~-~~~~r~~~ 180 (317)
+|++++|+||||||||||+++|+|++. |++|+|.+.|.+ ..... .++++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~-----~~~g~V~l~g~D----------------------~~r~~a~~ql~~~~ 153 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-----NLGKKVMFCAGD----------------------TFRAAGGTQLSEWG 153 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-----TTTCCEEEECCC----------------------CSSTTTTHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-----hcCCEEEEEeec----------------------CCChhHHHHHHHHH
Confidence 689999999999999999999999999 999999999986 21111 11221110
Q ss_pred HHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHH
Q 021147 181 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRAR 260 (317)
Q Consensus 181 ~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~ 260 (317)
....+++++|++.++ +..++++|+.+......+ ..++..++. . |-....++...+
T Consensus 154 --~~~~i~~v~q~~~~~-p~~~v~~~v~~~~~~~~d--------~~llDt~G~-----~---------~~~~~~~~eLs~ 208 (304)
T 1rj9_A 154 --KRLSIPVIQGPEGTD-SAALAYDAVQAMKARGYD--------LLFVDTAGR-----L---------HTKHNLMEELKK 208 (304)
T ss_dssp --HHHTCCEECCCTTCC-HHHHHHHHHHHHHHHTCS--------EEEECCCCC-----C---------TTCHHHHHHHHH
T ss_pred --HhcCceEEEeCCCCC-HHHHHHHHHHHHHhCCCC--------EEEecCCCC-----C---------CchHHHHHHHHH
Confidence 012489999987644 356788887643210000 000001110 0 101133455568
Q ss_pred Hhhcccceeccccc--eeeccC
Q 021147 261 IRTYLGELLGIPPA--KQIFDI 280 (317)
Q Consensus 261 qRl~iaral~~~p~--ilIlDE 280 (317)
||+++|||+..+|. +++||.
T Consensus 209 ~r~~iaRal~~~P~~~lLvLDa 230 (304)
T 1rj9_A 209 VKRAIAKADPEEPKEVWLVLDA 230 (304)
T ss_dssp HHHHHHHHCTTCCSEEEEEEET
T ss_pred HHHHHHHhhcCCCCeEEEEEcH
Confidence 99999999999999 566663
No 99
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.53 E-value=1.9e-16 Score=152.31 Aligned_cols=149 Identities=12% Similarity=-0.033 Sum_probs=90.2
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCc-CcEEEECcccCceeeEecccCCCCcccccceeeccC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRS 171 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~-~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~ 171 (317)
|++++ +++|++++|+||||||||||+++|+|+++ |+ +|+|.+.+.+.. +
T Consensus 128 l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~-----~~~~g~I~~~e~~~e-----------------------~ 177 (372)
T 2ewv_A 128 VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-----QTKSYHIITIEDPIE-----------------------Y 177 (372)
T ss_dssp HHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH-----HHSCCEEEEEESSCC-----------------------S
T ss_pred HHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC-----cCCCcEEEEecccHh-----------------------h
Confidence 45544 78999999999999999999999999999 87 899987665411 0
Q ss_pred ChHHHHHHHHHhhhhcccccc-----ccccccchhhHHHHHHhhhcc-CCCChHHHHHHHHHHHHcCC-C----------
Q 021147 172 DSSSLRNRMRCKAHKIGCEPS-----VIRKVNFVIFVVDGLAVLKSM-EGDSDVEKQYNQIVATTFNC-P---------- 234 (317)
Q Consensus 172 ~~~~~r~~~~~~~~~ig~v~Q-----~~~~~~~~~tv~eni~~~~~~-~~~~~~~~~~~~~~a~~~~l-~---------- 234 (317)
. ++. .+++++| ++..| ..+++.|+...... .-++..+.+.+..+++.+.. +
T Consensus 178 ~---~~~-------~~~~v~Q~~~g~~~~~~--~~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 178 V---FKH-------KKSIVNQREVGEDTKSF--ADALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNT 245 (372)
T ss_dssp C---CCC-------SSSEEEEEEBTTTBSCS--HHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCS
T ss_pred h---hcc-------CceEEEeeecCCCHHHH--HHHHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcch
Confidence 0 000 1333443 22222 22334443321000 00000011112222222211 0
Q ss_pred --------------------cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccce--eeccCCCC-CCHH
Q 021147 235 --------------------YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAK--QIFDIPES-SDPE 287 (317)
Q Consensus 235 --------------------~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~i--lIlDEPts-LD~~ 287 (317)
...++..+.++|..++ ..+|+| ||+++++++..+|++ +|+|++++ +|..
T Consensus 246 ~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~qrl--~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~ 317 (372)
T 2ewv_A 246 AIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRL--LPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSL 317 (372)
T ss_dssp HHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEEEE--EECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEEEe--EecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHH
Confidence 0012346777777776 678888 889999999999999 99999999 8865
No 100
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.52 E-value=4e-16 Score=136.52 Aligned_cols=127 Identities=17% Similarity=0.157 Sum_probs=80.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHH
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRC 182 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~ 182 (317)
|++++|+||||||||||+++|+|+++ ++| |.++|.+ ..++. .++
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~------~~G-i~~~g~~----------------------~~~~~--~~~----- 44 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK------SSG-VPVDGFY----------------------TEEVR--QGG----- 44 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH------HTT-CCCEEEE----------------------CCEEE--TTS-----
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc------cCC-EEEcCEe----------------------cchhH--hhh-----
Confidence 78999999999999999999999986 368 8887754 11111 112
Q ss_pred hhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHh
Q 021147 183 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIR 262 (317)
Q Consensus 183 ~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qR 262 (317)
+++||++|+.. .. ..+++ .... ..+. ......+++.+ ..+|+||+++
T Consensus 45 --~~ig~~~~~~~---g~---~~~l~---~~~~----------------~~~~----~~~~~~v~~~~--~~ls~~er~~ 91 (189)
T 2i3b_A 45 --RRIGFDVVTLS---GT---RGPLS---RVGL----------------EPPP----GKRECRVGQYV--VDLTSFEQLA 91 (189)
T ss_dssp --SEEEEEEEETT---SC---EEEEE---ECCC----------------CCCS----SSCCEESSSSE--ECHHHHHTTT
T ss_pred --ceEEEEEEecc---cc---eehhh---cccc----------------cCCc----cccccccceEE--EcchHHHHHH
Confidence 23898888641 10 01111 0000 0000 00111222222 6899999998
Q ss_pred h-cccc---eeccccceeeccC--CCC-CCHHHHHHHHHHHHH
Q 021147 263 T-YLGE---LLGIPPAKQIFDI--PES-SDPENELIIVDMLRY 298 (317)
Q Consensus 263 l-~iar---al~~~p~ilIlDE--Pts-LD~~t~~~l~~~l~~ 298 (317)
+ ++.+ |+..+|+++|+|| |++ +|+...+.+.+++..
T Consensus 92 ~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~ 134 (189)
T 2i3b_A 92 LPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST 134 (189)
T ss_dssp TTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC
T ss_pred HHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC
Confidence 8 4455 6899999999999 888 888877766666653
No 101
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.51 E-value=4.8e-17 Score=154.42 Aligned_cols=65 Identities=11% Similarity=0.135 Sum_probs=57.8
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
.+|+++|+++.|+.. .+ |+++||++++|++++|+|+||||||||+++|+|++. |++|+|.+.|.+
T Consensus 28 ~~ie~~~~~~~~~~~-~~-----l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~-----~~~g~v~i~~~d 92 (337)
T 2qm8_A 28 TLAESRRADHRAAVR-DL-----IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT-----AAGHKVAVLAVD 92 (337)
T ss_dssp HHHTCSSHHHHHHHH-HH-----HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEEC
T ss_pred HHHeeCCcccccChH-HH-----HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh-----hCCCEEEEEEEc
Confidence 357888999999543 33 999999999999999999999999999999999999 999999998864
No 102
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.51 E-value=5.3e-14 Score=133.19 Aligned_cols=51 Identities=24% Similarity=0.269 Sum_probs=46.0
Q ss_pred chhcCcHHHHH------hhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 251 DLLSLTDRARI------RTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 251 ~~~~LSgG~~q------Rl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.+..|||||+| |+++|++++.+|+++||||||+ ||+.....+.+.|+++..
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~ 302 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK 302 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 34789999999 6788899999999999999999 999999999999988754
No 103
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.50 E-value=2e-14 Score=143.43 Aligned_cols=50 Identities=12% Similarity=0.142 Sum_probs=46.7
Q ss_pred hhcC-cHHHHHhhcccceecccc--ceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 252 LLSL-TDRARIRTYLGELLGIPP--AKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 252 ~~~L-SgG~~qRl~iaral~~~p--~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
+..| ||||+||++|||+++.+| +++||||||+ ||+.+...+.+.|+++.+
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~ 447 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD 447 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC
Confidence 3567 999999999999999999 9999999999 999999999999999864
No 104
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.48 E-value=2.7e-14 Score=150.98 Aligned_cols=48 Identities=10% Similarity=0.134 Sum_probs=41.3
Q ss_pred hcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHH-HHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIV-DMLRYCLE 301 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~-~~l~~l~~ 301 (317)
..+|+|++|+..++++ +.+|+++|||||++ +|+.....+. ..++.+.+
T Consensus 734 stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~ 783 (918)
T 3thx_B 734 STFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIR 783 (918)
T ss_dssp CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4789999999999988 78999999999999 9999988887 56666543
No 105
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.48 E-value=6.9e-15 Score=140.18 Aligned_cols=121 Identities=15% Similarity=0.074 Sum_probs=81.0
Q ss_pred ceee-eeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcC----cE-EEECcccCceeeEecccCCCCcccccce
Q 021147 93 MTLS-DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER----AQ-VTYNSSVGDGTYFLQEYTIPRGVRHGEL 166 (317)
Q Consensus 93 L~~i-sl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~----G~-I~i~g~~~~~~~~~Q~~~l~~~~~~~~~ 166 (317)
|+.+ ++.|++|++++|+||||||||||++.|++.+... |++ |+ |++++.+
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~---~~~Gg~~G~vi~i~~e~--------------------- 175 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLP---PEEGGLNGSVIWIDTEN--------------------- 175 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSC---GGGTSCSCEEEEEESSS---------------------
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccc---hhcCCCCCeEEEEeCCC---------------------
Confidence 6665 7899999999999999999999999999998311 665 67 8888764
Q ss_pred eeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEE
Q 021147 167 VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVV 246 (317)
Q Consensus 167 ~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i 246 (317)
. .. +++ +++++|...++.. ++.+|+.+...+ .+..+.++.+.+..+ +
T Consensus 176 -~--~~----~~~-------i~~i~q~~~~~~~--~v~~ni~~~~~~---~~~~~~~~l~~~~~~------------~-- 222 (349)
T 1pzn_A 176 -T--FR----PER-------IREIAQNRGLDPD--EVLKHIYVARAF---NSNHQMLLVQQAEDK------------I-- 222 (349)
T ss_dssp -C--CC----HHH-------HHHHHHTTTCCHH--HHGGGEEEEECC---SHHHHHHHHHHHHHH------------H--
T ss_pred -C--CC----HHH-------HHHHHHHcCCCHH--HHhhCEEEEecC---ChHHHHHHHHHHHHH------------H--
Confidence 1 11 223 5666665543332 677777654321 122333333332221 0
Q ss_pred EeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHH
Q 021147 247 VTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPE 287 (317)
Q Consensus 247 ~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~ 287 (317)
.+||+|+ .+|+++|+|||++ +|+.
T Consensus 223 ------~~lS~G~-----------~~~~llIlDs~ta~ld~~ 247 (349)
T 1pzn_A 223 ------KELLNTD-----------RPVKLLIVDSLTSHFRSE 247 (349)
T ss_dssp ------HHSSSSS-----------SCEEEEEEETSSTTHHHH
T ss_pred ------HHhcccc-----------CCCCEEEEeCchHhhhhh
Confidence 4677776 7899999999999 9986
No 106
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.47 E-value=6.1e-16 Score=131.67 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=50.4
Q ss_pred EeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 75 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 75 ~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
+|+++.|++. .+ ++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.++|.+
T Consensus 11 ~~~~~~~g~~-~~-----l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l------~~~G~V~~~g~~ 69 (158)
T 1htw_A 11 EFSMLRFGKK-FA-----EILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI------GHQGNVKSPTYT 69 (158)
T ss_dssp HHHHHHHHHH-HH-----HHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT------TCCSCCCCCTTT
T ss_pred HHHHHHHHHH-HH-----HhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC------CCCCeEEECCEe
Confidence 4567777533 33 99999999999999999999999999999999998 357999988875
No 107
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.47 E-value=6.1e-15 Score=129.98 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=35.0
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhcccCCC--CCCcCcEEEECcc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK--FASERAQVTYNSS 144 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~--~~p~~G~I~i~g~ 144 (317)
-|++|++++|+||||||||||+++|+|++.++. .....+.|++++.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 799999999999999999999999999776220 0013346666654
No 108
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.46 E-value=5.5e-14 Score=146.27 Aligned_cols=130 Identities=12% Similarity=0.065 Sum_probs=88.5
Q ss_pred CCceEEEeEEEEcC--CCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccC
Q 021147 69 GSLTDAKNKILSYT--PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 69 ~~~I~~~nls~~y~--~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~ 146 (317)
.+.|++++...-+- +...+ ++|+||+ |++++|+||||||||||+|+|+|+... ++.|.+. +
T Consensus 548 ~~~i~i~~~rHP~le~~~~~v-----l~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~----~~~G~~v----p- 610 (765)
T 1ewq_A 548 GDRLQIRAGRHPVVERRTEFV-----PNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL----AQVGSFV----P- 610 (765)
T ss_dssp SSSEEEEEECCTTGGGTSCCC-----CEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH----HTTTCCB----S-
T ss_pred CCcEEEEEeECceEccCCceE-----eeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh----cccCcee----e-
Confidence 34578877732220 11233 9999999 999999999999999999999999741 4555432 0
Q ss_pred ceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 226 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~ 226 (317)
. . + ..+|+++| +|. .+++.+|+.
T Consensus 611 -----------------------a-~----~-------~~i~~v~~---i~~-~~~~~d~l~------------------ 633 (765)
T 1ewq_A 611 -----------------------A-E----E-------AHLPLFDG---IYT-RIGASDDLA------------------ 633 (765)
T ss_dssp -----------------------S-S----E-------EEECCCSE---EEE-ECCC-----------------------
T ss_pred -----------------------h-h----c-------cceeeHHH---hhc-cCCHHHHHH------------------
Confidence 0 0 0 12777766 221 122222211
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhccccee--ccccceeeccCC---CC-CCHHHH-HHHHHHHHH
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELL--GIPPAKQIFDIP---ES-SDPENE-LIIVDMLRY 298 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral--~~~p~ilIlDEP---ts-LD~~t~-~~l~~~l~~ 298 (317)
..+|+++++++.+++++ +.+|+++||||| |+ +|+.+. ..+.+.+.+
T Consensus 634 --------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~ 686 (765)
T 1ewq_A 634 --------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE 686 (765)
T ss_dssp ---------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred --------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh
Confidence 24688899999999999 999999999999 99 999876 467776665
No 109
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.46 E-value=1.8e-15 Score=144.87 Aligned_cols=129 Identities=13% Similarity=0.066 Sum_probs=80.2
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
++++||.|++|++++|+||||||||||+++|+|+++ |++|.|.++|.. ++.
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~-----~~~g~I~ie~~~------------------------e~~ 215 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP-----FDQRLITIEDVP------------------------ELF 215 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC-----TTSCEEEEESSS------------------------CCC
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC-----CCceEEEECCcc------------------------ccC
Confidence 399999999999999999999999999999999999 999999998753 111
Q ss_pred hHHHHHHHHHhhhhccccc-ccccc-ccchhhHHHHHHhhhccCCCC----hHHHHHHHHHHHHcCCCcccCCCCCCEEE
Q 021147 173 SSSLRNRMRCKAHKIGCEP-SVIRK-VNFVIFVVDGLAVLKSMEGDS----DVEKQYNQIVATTFNCPYLSFRDDKPVVV 246 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~-Q~~~~-~~~~~tv~eni~~~~~~~~~~----~~~~~~~~~~a~~~~l~~~~l~~~~~~~i 246 (317)
....+. .+++++ |+..+ .....|+++|+........+. +.......++++. ++.|+.+.+
T Consensus 216 ~~~~~~-------~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~-------l~~g~~~~l 281 (361)
T 2gza_A 216 LPDHPN-------HVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINV-------AASGHGGSI 281 (361)
T ss_dssp CTTCSS-------EEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHH-------HHTTCCSCE
T ss_pred ccccCC-------EEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHH-------HhcCCCeEE
Confidence 111111 278888 76543 113568999998764322110 0001123344444 334666645
Q ss_pred Ee-ccchhcCcHHHHHhhcccc
Q 021147 247 VT-HGDLLSLTDRARIRTYLGE 267 (317)
Q Consensus 247 ~~-hg~~~~LSgG~~qRl~iar 267 (317)
++ |. .-+.+..+|+....
T Consensus 282 ~t~H~---~~~~~~~~Rl~~l~ 300 (361)
T 2gza_A 282 TSCHA---GSCELTFERLALMV 300 (361)
T ss_dssp EEEEC---SSHHHHHHHHHHHH
T ss_pred EEECC---CCHHHHHHHHHHHH
Confidence 44 54 34677777776543
No 110
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.46 E-value=1.3e-14 Score=127.71 Aligned_cols=138 Identities=15% Similarity=0.104 Sum_probs=83.4
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHH
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNR 179 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~ 179 (317)
.++|++++|+||||||||||+++|+|+++|. ++..|.|.++|.. ++.... .
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~--g~~~g~v~~d~~~-------------------------~~~~~~-~- 69 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ--GLPAEVVPMDGFH-------------------------LDNRLL-E- 69 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT--TCCEEEEESGGGB-------------------------CCHHHH-G-
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc--CCceEEEecCCCc-------------------------CCHHHH-H-
Confidence 5789999999999999999999999999821 1235666666543 111111 0
Q ss_pred HHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHH
Q 021147 180 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRA 259 (317)
Q Consensus 180 ~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~ 259 (317)
.++...... .....+ .....+.+..+. ..+...+.+.+++ ..+|+|+
T Consensus 70 ------~~~~~~~~~----------------~~~~~~----~~~~~~~l~~l~-----~~~~i~~p~~d~~--~~~~~g~ 116 (208)
T 3c8u_A 70 ------PRGLLPRKG----------------APETFD----FEGFQRLCHALK-----HQERVIYPLFDRA--RDIAIAG 116 (208)
T ss_dssp ------GGTCGGGTT----------------SGGGBC----HHHHHHHHHHHH-----HCSCEEEEEEETT--TTEEEEE
T ss_pred ------HhcccccCC----------------CCchhh----HHHHHHHHHHHh-----cCCceecccCCcc--ccCCCCC
Confidence 022111000 000000 001122222211 0013344456666 6789999
Q ss_pred HHhhccc-ceeccccceeeccCCC-----------C-CCHHHHHHHHHHHHHH
Q 021147 260 RIRTYLG-ELLGIPPAKQIFDIPE-----------S-SDPENELIIVDMLRYC 299 (317)
Q Consensus 260 ~qRl~ia-ral~~~p~ilIlDEPt-----------s-LD~~t~~~l~~~l~~l 299 (317)
+||++++ ++++.++.++++|||. . +|...+..+...+++.
T Consensus 117 ~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~ 169 (208)
T 3c8u_A 117 AAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRW 169 (208)
T ss_dssp EEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHH
T ss_pred ceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHH
Confidence 9999998 9999999999999974 4 6777777666666664
No 111
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.46 E-value=4.7e-15 Score=129.91 Aligned_cols=141 Identities=13% Similarity=0.113 Sum_probs=82.4
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCC--------CCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDK--------FASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~--------~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
++|++++|+||||||||||+++|+|+++... -.|..|+ ++|.+ +...+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~----------------------~~~~~ 57 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKD----------------------YYFVT 57 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTT----------------------BEECC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCce----------------------EEEcc
Confidence 5899999999999999999999999985100 0144554 35543 33456
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEe--cc
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT--HG 250 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~--hg 250 (317)
...+++. + +|+..++.. ++.+|+ ++. ..+.+.++++.... .++-. .|
T Consensus 58 ~~~~~~~-------i---~~~~~l~~~--~~~~n~-~g~--------~~~~i~~~~~~~~~----------~~~~~~~~g 106 (198)
T 1lvg_A 58 REMMQRD-------I---AAGDFIEHA--EFSGNL-YGT--------SKEAVRAVQAMNRI----------CVLDVDLQG 106 (198)
T ss_dssp HHHHHHH-------H---HHTCEEEEE--EETTEE-EEE--------EHHHHHHHHHTTCE----------EEEECCHHH
T ss_pred HHHHHHH-------H---HcCCCEeee--eecCcc-CCC--------CHHHHHHHHHcCCc----------EEEECCHHH
Confidence 6666654 2 344433332 344443 221 12234455443111 11100 11
Q ss_pred chhcCcHHHHHhhcccc-eeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 251 DLLSLTDRARIRTYLGE-LLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 251 ~~~~LSgG~~qRl~iar-al~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
... .+++-..+| +++.+|++++|||+++ +|..+++.+.+.|.++..
T Consensus 107 --~~~---~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~ 154 (198)
T 1lvg_A 107 --VRS---IKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAART 154 (198)
T ss_dssp --HHH---HTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred --HHH---HHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 110 111122677 7889999999999999 999999999998877654
No 112
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.44 E-value=1e-14 Score=131.49 Aligned_cols=145 Identities=13% Similarity=0.061 Sum_probs=87.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHh---hcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHH
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRIS---KVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRN 178 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~---Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~ 178 (317)
++++++|+||||||||||+++|+ |+.. |+.|+|.+++.+ . . ..+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~-----~~~G~i~~~~~~----------------------~---~-~~~~~ 74 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH-----LSSGHFLRENIK----------------------A---S-TEVGE 74 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC-----EEHHHHHHHHHH----------------------T---T-CHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE-----ecHHHHHHHHHh----------------------c---C-ChHHH
Confidence 47999999999999999999999 9988 888988866542 0 0 11222
Q ss_pred HHHHhhhhccccccccccccchhhHHHHHHhhhc---------cCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEE--
Q 021147 179 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS---------MEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVV-- 247 (317)
Q Consensus 179 ~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~---------~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~-- 247 (317)
. ++.++|+..++ ...++.+++..... ...... ..+...+...... +..+.+-
T Consensus 75 ~-------i~~~~~~~~~~-~~~~v~~~l~~~l~~~~~~~~il~g~~~~--~~~~~~l~~~~~~-------~~vi~L~~~ 137 (246)
T 2bbw_A 75 M-------AKQYIEKSLLV-PDHVITRLMMSELENRRGQHWLLDGFPRT--LGQAEALDKICEV-------DLVISLNIP 137 (246)
T ss_dssp H-------HHHHHHTTCCC-CHHHHHHHHHHHHHTCTTSCEEEESCCCS--HHHHHHHHTTCCC-------CEEEEEECC
T ss_pred H-------HHHHHHcCCCC-CHHHHHHHHHHHHHhcCCCeEEEECCCCC--HHHHHHHHhhcCC-------CEEEEEECC
Confidence 2 34444443322 24567777754210 001111 1122222111111 0000000
Q ss_pred -----ec---cchhcCcHHHHHhhccccee-ccccceeecc----CCCC-CCHHHHHHHHHHHHHHHH
Q 021147 248 -----TH---GDLLSLTDRARIRTYLGELL-GIPPAKQIFD----IPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 248 -----~h---g~~~~LSgG~~qRl~iaral-~~~p~ilIlD----EPts-LD~~t~~~l~~~l~~l~~ 301 (317)
++ ..+..||| |+ +++ +.+|+++++| ||++ +|+.++..+.+.++++.+
T Consensus 138 ~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 138 FETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp HHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 00 01146888 45 788 8999999999 9999 999999999888887643
No 113
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.44 E-value=2.2e-14 Score=126.22 Aligned_cols=139 Identities=12% Similarity=0.129 Sum_probs=91.3
Q ss_pred ceeeee-EecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccC
Q 021147 93 MTLSDY-DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRS 171 (317)
Q Consensus 93 L~~isl-~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~ 171 (317)
|+++.. .+++|++++|+||||||||||++.|++... +..|.|.+.+.+ .
T Consensus 12 Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~-----~~~~~v~~~~~~-------------------------~ 61 (235)
T 2w0m_A 12 FDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL-----RDGDPCIYVTTE-------------------------E 61 (235)
T ss_dssp HHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH-----HHTCCEEEEESS-------------------------S
T ss_pred HHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH-----HCCCeEEEEEcc-------------------------c
Confidence 888888 899999999999999999999999999998 778888865543 2
Q ss_pred ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccc
Q 021147 172 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGD 251 (317)
Q Consensus 172 ~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~ 251 (317)
....+..++ ..+++.++.... +++.+.+... . ..+ + .+..
T Consensus 62 ~~~~~~~~~----~~~~~~~~~~~~--------~~~~~~~~~~---~-----------~~~-~------~~~~------- 101 (235)
T 2w0m_A 62 SRDSIIRQA----KQFNWDFEEYIE--------KKLIIIDALM---K-----------EKE-D------QWSL------- 101 (235)
T ss_dssp CHHHHHHHH----HHTTCCCGGGBT--------TTEEEEECCC-------------------C------TTBC-------
T ss_pred CHHHHHHHH----HHhcchHHHHhh--------CCEEEEeccc---c-----------ccC-c------eeee-------
Confidence 233333321 236665553210 0000001000 0 000 0 0111
Q ss_pred hhcCcHHHHHhhcccceeccccc--eeeccCCCC-C--CHHHHHHHHHHHHHHHHh
Q 021147 252 LLSLTDRARIRTYLGELLGIPPA--KQIFDIPES-S--DPENELIIVDMLRYCLEH 302 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~~~p~--ilIlDEPts-L--D~~t~~~l~~~l~~l~~~ 302 (317)
...|.++.++...+.+...+|+ ++|+|||++ + |+.....+.+.|+++.+.
T Consensus 102 -~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~ 156 (235)
T 2w0m_A 102 -VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNK 156 (235)
T ss_dssp -SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHH
T ss_pred -cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHh
Confidence 2347788776666666667999 999999998 7 998888888888887644
No 114
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.43 E-value=3.1e-15 Score=145.89 Aligned_cols=170 Identities=12% Similarity=0.071 Sum_probs=91.8
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCE--EEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEEC---cc-
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN---SS- 144 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~--vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~---g~- 144 (317)
.+++++ ++.|++. . |+++||+|++|++ +||+||||||||||+|+|+|+.- .|.-... +.
T Consensus 16 ~l~~~~-~~~y~~~-~------L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-------~g~~~~~~~~~~~ 80 (427)
T 2qag_B 16 TVPLAG-HVGFDSL-P------DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-------EGEPATHTQPGVQ 80 (427)
T ss_dssp -CCCCC-CC-CC---C------HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC--------------CCSSCE
T ss_pred eEEEee-EEEECCe-e------cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-------cCCcCCCCCccce
Confidence 467777 8888643 2 8999999999999 99999999999999999999952 1110000 00
Q ss_pred cCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC--C----h
Q 021147 145 VGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD--S----D 218 (317)
Q Consensus 145 ~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~--~----~ 218 (317)
...++|++|++.+++. +||.+|+.++...... . .
T Consensus 81 ~~~i~~v~Q~~~l~~~----------------------------------------ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 81 LQSNTYDLQESNVRLK----------------------------------------LTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp EEEEEEEEEC--CEEE----------------------------------------EEEEEEECCCC-CCHHHHSHHHHH
T ss_pred EeeEEEEeecCccccc----------------------------------------cchhhhhhhhhccccchhhhHHHH
Confidence 0123445554444333 3444444332210000 0 0
Q ss_pred HHHHHHHHHHHHc-CCCc--ccCCCCC-C--EEEEec-cchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHH
Q 021147 219 VEKQYNQIVATTF-NCPY--LSFRDDK-P--VVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENEL 290 (317)
Q Consensus 219 ~~~~~~~~~a~~~-~l~~--~~l~~~~-~--~~i~~h-g~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~ 290 (317)
....+...++... ++.. ...++.. . +.++.. + ..|+... +.++++|..+++++++|+|+. |.+....
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~--~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~ 195 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG--HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELT 195 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCC--CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHH
Confidence 0112233333332 3210 0111111 1 222332 2 3466655 568888989999999999999 9888878
Q ss_pred HHHHHHHHHH
Q 021147 291 IIVDMLRYCL 300 (317)
Q Consensus 291 ~l~~~l~~l~ 300 (317)
.+.+.+++-+
T Consensus 196 ~l~~~I~~~L 205 (427)
T 2qag_B 196 KFKIKITSEL 205 (427)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877633
No 115
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.41 E-value=3.4e-13 Score=131.48 Aligned_cols=48 Identities=19% Similarity=0.140 Sum_probs=44.6
Q ss_pred hcCcHHHHHhhcccceec----cccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLG----IPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~----~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
..|||||+||+++|++++ .+|+++|||||++ ||+.+...+.+.|+++.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~ 384 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHR 384 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHC
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHh
Confidence 469999999999999999 5799999999999 99999999999998864
No 116
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.41 E-value=1.2e-15 Score=148.89 Aligned_cols=142 Identities=13% Similarity=-0.035 Sum_probs=85.2
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeec---
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIR--- 169 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~--- 169 (317)
|+++ + .++|++++|+||||||||||+++|+|+++ |++|+|.+.+.+... . + +.+ ....+.
T Consensus 159 L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~-----~~~g~I~~~ed~ie~--~-----~-~~~--~q~~v~~~~ 221 (418)
T 1p9r_A 159 FRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELN-----SSERNILTVEDPIEF--D-----I-DGI--GQTQVNPRV 221 (418)
T ss_dssp HHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHC-----CTTSCEEEEESSCCS--C-----C-SSS--EEEECBGGG
T ss_pred HHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcC-----CCCCEEEEecccchh--c-----c-CCc--ceEEEcccc
Confidence 4555 3 37899999999999999999999999999 889999998875210 0 0 000 000000
Q ss_pred cCChHHHHHHHHHhhhhccccccccccc--c---chhhHHHHHHhhhcc------CCCChHHHHHHHHHHHHcCCCcccC
Q 021147 170 RSDSSSLRNRMRCKAHKIGCEPSVIRKV--N---FVIFVVDGLAVLKSM------EGDSDVEKQYNQIVATTFNCPYLSF 238 (317)
Q Consensus 170 ~~~~~~~r~~~~~~~~~ig~v~Q~~~~~--~---~~~tv~eni~~~~~~------~~~~~~~~~~~~~~a~~~~l~~~~l 238 (317)
++.. ...+ .+++.|+|..+ . ...|+.+++.+.... ....+ .......+..++++...
T Consensus 222 g~~f---~~~l------r~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~--~~~~i~rL~~lgl~~~~- 289 (418)
T 1p9r_A 222 DMTF---ARGL------RAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNT--AVGAVTRLRDMGIEPFL- 289 (418)
T ss_dssp TBCH---HHHH------HHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSS--SHHHHHHHHHHTCCHHH-
T ss_pred CcCH---HHHH------HHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhh--HHHHHHHHHHcCCcHHH-
Confidence 0111 0000 12344776543 1 225888888764311 01111 11233345556653211
Q ss_pred CCCCCEEEEeccchhcCcHHHHHhhcccceeccccceee
Q 021147 239 RDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQI 277 (317)
Q Consensus 239 ~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilI 277 (317)
. +..|||||+|| |||+++.+|++..
T Consensus 290 ----~--------~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 290 ----I--------SSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp ----H--------HHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred ----H--------HHHHHHHHHHH--hhhhhcCCCCccC
Confidence 1 16899999999 9999999999865
No 117
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.40 E-value=7.8e-14 Score=119.96 Aligned_cols=140 Identities=17% Similarity=0.102 Sum_probs=82.9
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHH
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRN 178 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~ 178 (317)
.+++|++++|+||||||||||+++|+|. |..|.|.++|.+ +.....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-------~~~g~i~i~~d~----------------------~~~~~~----- 50 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL-------PGVPKVHFHSDD----------------------LWGYIK----- 50 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC-------SSSCEEEECTTH----------------------HHHTCC-----
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc-------cCCCeEEEcccc----------------------hhhhhh-----
Confidence 5789999999999999999999999997 447999998865 111100
Q ss_pred HHHHhhhhccccccccccccchhhHHHHHHhhhc-cC-CCChHHHHHHHHHHHHcCCCcccCCC-CCCEEEEeccchhcC
Q 021147 179 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-ME-GDSDVEKQYNQIVATTFNCPYLSFRD-DKPVVVVTHGDLLSL 255 (317)
Q Consensus 179 ~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~~-~~~~~~~~~~~~~a~~~~l~~~~l~~-~~~~~i~~hg~~~~L 255 (317)
....++|++|... ...++.+|+.+... .. ..... .+..+....++. .+.. +... ..+
T Consensus 51 ----~~~~~~~~~~~~~---~~~~v~~~l~~~~~~~~~~~~~~---~~~~~~~~~~l~--~~~~~~~~~--------~~l 110 (191)
T 1zp6_A 51 ----HGRIDPWLPQSHQ---QNRMIMQIAADVAGRYAKEGYFV---ILDGVVRPDWLP--AFTALARPL--------HYI 110 (191)
T ss_dssp ----SSCCCTTSSSHHH---HHHHHHHHHHHHHHHHHHTSCEE---EECSCCCTTTTH--HHHTTCSCE--------EEE
T ss_pred ----cccccCCccchhh---hhHHHHHHHHHHHHHHhccCCeE---EEeccCcHHHHH--HHHhcCCCe--------EEE
Confidence 0012677777653 24577887754211 00 00000 000000000000 0000 2223 578
Q ss_pred cHHHHHhhcccceeccccceeeccCCCCCCHHHHHHHHHHHHHH
Q 021147 256 TDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYC 299 (317)
Q Consensus 256 SgG~~qRl~iaral~~~p~ilIlDEPtsLD~~t~~~l~~~l~~l 299 (317)
|+|++|++.++|++.++|+++ +|+.....+.+.+..+
T Consensus 111 s~~~~~~v~~~R~~~r~~~~l-------ld~~~~~~~~~~~~~l 147 (191)
T 1zp6_A 111 VLRTTAAEAIERCLDRGGDSL-------SDPLVVADLHSQFADL 147 (191)
T ss_dssp EEECCHHHHHHHHHTTCTTSC-------CCHHHHHHHHHHTTCC
T ss_pred EecCCHHHHHHHHHhcCCCcc-------CCHHHHHHHHHHHhcc
Confidence 999999999999999988765 4666666666655443
No 118
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.39 E-value=6e-13 Score=140.97 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=40.4
Q ss_pred CceEEEeEEEEcCC----CCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhh
Q 021147 70 SLTDAKNKILSYTP----GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 70 ~~I~~~nls~~y~~----~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~G 125 (317)
..|++++...-+-+ ...+ ++|+||++++|++++|+||||||||||+|++++
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v-----~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFI-----PNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCC-----CEEEEEETTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred cceEeecCccchhhhcCCceee-----cccceeecCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45777776544422 1233 999999999999999999999999999999943
No 119
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.37 E-value=2.5e-13 Score=126.30 Aligned_cols=127 Identities=17% Similarity=0.016 Sum_probs=77.8
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHH
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRM 180 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~ 180 (317)
+++.+++|+|+||||||||+++|.+++. +. | .....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~-----~~-g------~~~~~-------------------------------- 64 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM-----EK-Y------GGEKS-------------------------------- 64 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH-----HH-H------GGGSC--------------------------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh-----hc-C------CCCce--------------------------------
Confidence 3567999999999999999999999998 42 1 00000
Q ss_pred HHhhhhccccccccccccchhhHHHHHHhhhcc-------CCCChHHHHHHHHHHHHcCCCcccCCCC------CCEEEE
Q 021147 181 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM-------EGDSDVEKQYNQIVATTFNCPYLSFRDD------KPVVVV 247 (317)
Q Consensus 181 ~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~-------~~~~~~~~~~~~~~a~~~~l~~~~l~~~------~~~~i~ 247 (317)
+.+|+|+..+++ .++.+|+.+.... .....-+.....+.++.+. .+ ..+.+.
T Consensus 65 ------~~iv~~D~f~~~--~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~~~l~~l~-------~g~~t~~~~~v~~p 129 (290)
T 1odf_A 65 ------IGYASIDDFYLT--HEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIF-------NNNEHPDQDTVVLP 129 (290)
T ss_dssp ------EEEEEGGGGBCC--HHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHHHHHHHHT-------C------CCEEEEC
T ss_pred ------EEEeccccccCC--hHHHHHHhccccccchhhhccCcchhHHHHHHHHHHHhh-------ccCccccCcceeec
Confidence 333356554443 3556666543210 0011112333444455432 23 222222
Q ss_pred eccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHH
Q 021147 248 THGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPEN 288 (317)
Q Consensus 248 ~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t 288 (317)
..+ ..+||||+||+++|++...+|+++|+|++++ +|+..
T Consensus 130 ~y~--~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 130 KYD--KSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp CEE--TTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred cCc--cccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 334 6899999999999843333999999999999 99853
No 120
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.35 E-value=3.5e-14 Score=132.83 Aligned_cols=65 Identities=12% Similarity=0.123 Sum_probs=56.0
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEe-------------------cCCCEEEEEcCCCChHHHHHHHHhhcccC
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDV-------------------PKTTSLLLIGPKGSGKSSLVNRISKVFEN 129 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I-------------------~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p 129 (317)
..+|+++||++.|. .+ +++|||.+ ++|+++||+|+||||||||+++|+|++..
T Consensus 35 ~~~i~~~~v~~~y~---~~-----~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~ 106 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL---PL-----SRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR 106 (308)
T ss_dssp CTTCCHHHHHHTHH---HH-----HHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT
T ss_pred ccccchHhHHHHHH---HH-----HHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45799999999993 33 89999988 99999999999999999999999999751
Q ss_pred CCCCCcCcEEEE---Ccc
Q 021147 130 DKFASERAQVTY---NSS 144 (317)
Q Consensus 130 ~~~~p~~G~I~i---~g~ 144 (317)
. |++|+|.+ ||.
T Consensus 107 ~---~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 107 W---PEHRRVELITTDGF 121 (308)
T ss_dssp S---TTCCCEEEEEGGGG
T ss_pred C---CCCCeEEEEecCCc
Confidence 1 57899998 765
No 121
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.34 E-value=4.9e-13 Score=132.38 Aligned_cols=89 Identities=13% Similarity=0.203 Sum_probs=64.7
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
-+++||++++|++++|+|+||||||||+++|+|++. |++|+|.++|.+. .+...
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~-----~~~G~V~l~g~D~---------------------~r~aa 336 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE-----QQGKSVMLAAGDT---------------------FRAAA 336 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEECCCT---------------------TCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh-----hcCCeEEEecCcc---------------------cchhh
Confidence 468999999999999999999999999999999999 9999999977541 00000
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhh
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVL 210 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~ 210 (317)
...++.. .....|+|++|...++ ...++++|+.++
T Consensus 337 ~eQL~~~--~~r~~I~vV~Q~~~~~-p~~tV~e~l~~a 371 (503)
T 2yhs_A 337 VEQLQVW--GQRNNIPVIAQHTGAD-SASVIFDAIQAA 371 (503)
T ss_dssp HHHHHHH--HHHHTCCEECCSTTCC-HHHHHHHHHHHH
T ss_pred HHHHHHH--HHhcCceEEecccCcC-HHHHHHHHHHHH
Confidence 0111110 0123499999986543 467888888764
No 122
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.34 E-value=6.3e-14 Score=129.09 Aligned_cols=142 Identities=13% Similarity=0.121 Sum_probs=90.7
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
++++++++++| ++|+||||||||||+|+|+|.+. + |.|.++|.+ +....
T Consensus 36 l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~-----~--~~i~i~g~~----------------------l~~~~ 84 (274)
T 2x8a_A 36 FKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG-----L--NFISVKGPE----------------------LLNMY 84 (274)
T ss_dssp HHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT-----C--EEEEEETTT----------------------TCSST
T ss_pred HHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC-----C--CEEEEEcHH----------------------HHhhh
Confidence 88999999999 99999999999999999999987 5 689988875 22222
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccch
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDL 252 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~ 252 (317)
....++. +++++|......+.+++.|++......... ... .. .. ... .. ..
T Consensus 85 ~~~~~~~-------i~~vf~~a~~~~p~i~~~Deid~~~~~r~~-----~~~----~~--~~--~~~-~~--------~l 135 (274)
T 2x8a_A 85 VGESERA-------VRQVFQRAKNSAPCVIFFDEVDALCPRRSD-----RET----GA--SV--RVV-NQ--------LL 135 (274)
T ss_dssp THHHHHH-------HHHHHHHHHHTCSEEEEEETCTTTCC--------------------CT--THH-HH--------HH
T ss_pred hhHHHHH-------HHHHHHHHHhcCCCeEeeehhhhhhcccCC-----Ccc----hH--HH--HHH-HH--------HH
Confidence 2233333 677777543223334556666532211000 000 00 00 000 00 11
Q ss_pred hcCcHHHHHhhcccceeccccceeeccCCC------------C-CCHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGIPPAKQIFDIPE------------S-SDPENELIIVDML 296 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p~ilIlDEPt------------s-LD~~t~~~l~~~l 296 (317)
..||||++||..+++|+..+|+++ |+|. . -|...+..+.+.+
T Consensus 136 ~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 136 TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 589999999999999999999864 8763 2 3677776666544
No 123
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.31 E-value=2.5e-12 Score=121.55 Aligned_cols=81 Identities=16% Similarity=0.256 Sum_probs=58.4
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHH
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRN 178 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~ 178 (317)
..++|++++|+||||||||||++.|+|++. |++|+|.+.|.+ ........
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~-----~~~g~V~l~g~D----------------------~~r~~a~e--- 174 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK-----NHGFSVVIAASD----------------------TFRAGAIE--- 174 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEEC----------------------CSSTTHHH---
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH-----hcCCEEEEEeec----------------------ccccchHH---
Confidence 447899999999999999999999999999 999999999876 22222111
Q ss_pred HHHHhhhhcc--ccccccccccchhhHHHHHHhh
Q 021147 179 RMRCKAHKIG--CEPSVIRKVNFVIFVVDGLAVL 210 (317)
Q Consensus 179 ~~~~~~~~ig--~v~Q~~~~~~~~~tv~eni~~~ 210 (317)
+...+.+++| +++|...+ .+..++++|+.++
T Consensus 175 ql~~~~~~~gv~~v~q~~~~-~p~~~v~e~l~~~ 207 (328)
T 3e70_C 175 QLEEHAKRIGVKVIKHSYGA-DPAAVAYDAIQHA 207 (328)
T ss_dssp HHHHHHHHTTCEEECCCTTC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHcCceEEeccccC-CHHHHHHHHHHHH
Confidence 1112223366 77887653 3467888888654
No 124
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.28 E-value=6.3e-12 Score=115.22 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=28.1
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+++|++++|+||||||||||++.+++.+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 588999999999999999999999999765
No 125
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.27 E-value=3.2e-12 Score=122.15 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=45.1
Q ss_pred EeEEEEcCCCCccccccCceeeee-------EecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCc-CcEEEEC
Q 021147 75 KNKILSYTPGAWIENVGGMTLSDY-------DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYN 142 (317)
Q Consensus 75 ~nls~~y~~~~~~~~~~~L~~isl-------~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~-~G~I~i~ 142 (317)
.+++++|....... |+++.+ .+.+|++++|+||||||||||+++|+|+++ |+ .|.|...
T Consensus 92 ~~~~iR~~~~~~~~----l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~-----~~~~~~i~t~ 158 (356)
T 3jvv_A 92 AGAVFRTIPSKVLT----MEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN-----NTKYHHILTI 158 (356)
T ss_dssp EEEEEEEECCSCCC----TTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH-----HHCCCEEEEE
T ss_pred cEEEEEECCCCCCC----HHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc-----CCCCcEEEEc
Confidence 46777773332221 677766 778999999999999999999999999999 76 5666543
No 126
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.25 E-value=5.4e-13 Score=127.47 Aligned_cols=122 Identities=14% Similarity=-0.020 Sum_probs=74.0
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEEC-cccCceeeEecccCCCCcccccceeeccC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN-SSVGDGTYFLQEYTIPRGVRHGELVIRRS 171 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~-g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~ 171 (317)
++++++. .+|++++|+||||||||||+|+|+|+... |.+|+|.++ |.. ..
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~----~~~G~I~~~~G~g----------------------~~-- 256 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE----ILTNDVSNVSGLG----------------------QH-- 256 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC----CCCC-----------------------------------
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc----cccCCccccCCCC----------------------cc--
Confidence 7888875 47999999999999999999999999851 568999876 543 10
Q ss_pred ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccc
Q 021147 172 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGD 251 (317)
Q Consensus 172 ~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~ 251 (317)
. .....+++++|+..++. ..++.++.. ...........+.++++.+++.. +. +...
T Consensus 257 t---------t~~~~i~~v~q~~~l~d-tpgv~e~~l----~~l~~~e~~~~~~e~l~~~gl~~--f~-~~~~------- 312 (358)
T 2rcn_A 257 T---------TTAARLYHFPHGGDVID-SPGVREFGL----WHLEPEQITQGFVEFHDYLGHCK--YR-DCKH------- 312 (358)
T ss_dssp -----------CCCEEEECTTSCEEEE-CHHHHTCCC----CCCCHHHHHHTSGGGGGGTTCSS--ST-TCCS-------
T ss_pred c---------eEEEEEEEECCCCEecC-cccHHHhhh----cCCCHHHHHHHHHHHHHHcCCch--hc-CCCc-------
Confidence 0 01123888888876543 567776411 11111122233445566666532 22 2333
Q ss_pred hhcCcHHHHHhhccccee
Q 021147 252 LLSLTDRARIRTYLGELL 269 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral 269 (317)
..+| |++||+++|+++
T Consensus 313 -~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 313 -DADP-GCAIREAVENGA 328 (358)
T ss_dssp -SSCT-TCHHHHHHHHTS
T ss_pred -ccCC-HHHHHHHHHhcC
Confidence 5899 999999999886
No 127
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.24 E-value=2.8e-12 Score=134.06 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=33.7
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++|+||+ ++|++++|+||||||||||+|+|+|+..
T Consensus 598 lndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 598 ANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp CEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 9999999 9999999999999999999999999864
No 128
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.23 E-value=3.7e-14 Score=133.30 Aligned_cols=37 Identities=30% Similarity=0.428 Sum_probs=34.2
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcc--------cCCCCCCcCcEEEECccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVF--------ENDKFASERAQVTYNSSV 145 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~--------~p~~~~p~~G~I~i~g~~ 145 (317)
++++|+|+||||||||+|.|.|+. . |+.|+|.+||.+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~-----~d~G~i~idg~~ 49 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIE-----NEFGEVSVDDQL 49 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEEC-----SSCCSCCEEEEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEE-----ecCcccCccHHH
Confidence 589999999999999999999997 5 899999999975
No 129
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.20 E-value=6.9e-13 Score=119.58 Aligned_cols=128 Identities=14% Similarity=0.110 Sum_probs=77.5
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
++++++++++| ++|+||||||||||+++|++... .|.|.+++.+ +....
T Consensus 41 ~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-------~~~i~~~~~~----------------------~~~~~ 89 (254)
T 1ixz_A 41 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSD----------------------FVEMF 89 (254)
T ss_dssp HHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHH----------------------HHHSC
T ss_pred HHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-------CCEEEeeHHH----------------------HHHHH
Confidence 89999999999 99999999999999999999875 6788888764 21111
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHH-hhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccc
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLA-VLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGD 251 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~-~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~ 251 (317)
....++. ++.++|........+++.|++. ++...............+.+..+ .
T Consensus 90 ~~~~~~~-------i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~l-----l-------------- 143 (254)
T 1ixz_A 90 VGVGAAR-------VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL-----L-------------- 143 (254)
T ss_dssp TTHHHHH-------HHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHH-----H--------------
T ss_pred hhHHHHH-------HHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHH-----H--------------
Confidence 1222333 4455554322222345667774 32211110000111122222211 0
Q ss_pred hhcCcHHHHHhhcccceeccccceeeccC
Q 021147 252 LLSLTDRARIRTYLGELLGIPPAKQIFDI 280 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~~~p~ilIlDE 280 (317)
..||||++||..+++|+..+|++ +|+
T Consensus 144 -~~l~g~~~~~~~i~~a~t~~p~~--ld~ 169 (254)
T 1ixz_A 144 -VEMDGFEKDTAIVVMAATNRPDI--LDP 169 (254)
T ss_dssp -HHHHTCCTTCCEEEEEEESCGGG--SCG
T ss_pred -HHHhCCCCCCCEEEEEccCCchh--CCH
Confidence 46889999999999999998865 454
No 130
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.20 E-value=8.2e-12 Score=123.58 Aligned_cols=47 Identities=15% Similarity=0.294 Sum_probs=45.5
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
|+++||+|++ ++++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 20 l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~ 66 (483)
T 3euj_A 20 FFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI-----PDLTLLNFRNTT 66 (483)
T ss_dssp EEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC-----CCTTTCCCCCTT
T ss_pred ccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC-----CCCCEEEECCEE
Confidence 9999999999 9999999999999999999999999 999999999974
No 131
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.20 E-value=6.2e-13 Score=121.81 Aligned_cols=125 Identities=13% Similarity=0.093 Sum_probs=77.2
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
++++++++++| ++|+||||||||||+++|++... .|.|.+++.+ +....
T Consensus 65 l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-------~~~i~~~~~~----------------------~~~~~ 113 (278)
T 1iy2_A 65 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSD----------------------FVEMF 113 (278)
T ss_dssp HHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHH----------------------HHHST
T ss_pred HHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-------CCEEEecHHH----------------------HHHHH
Confidence 88999999999 99999999999999999999875 6888888764 21111
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHh-hhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccc
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAV-LKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGD 251 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~-~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~ 251 (317)
....++. +++++|........+++.|++.. ................+.+..+ .
T Consensus 114 ~~~~~~~-------i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l-----l-------------- 167 (278)
T 1iy2_A 114 VGVGAAR-------VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL-----L-------------- 167 (278)
T ss_dssp TTHHHHH-------HHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHH-----H--------------
T ss_pred hhHHHHH-------HHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHH-----H--------------
Confidence 1222333 55555554322223456777743 2211110000011112222211 0
Q ss_pred hhcCcHHHHHhhcccceeccccce
Q 021147 252 LLSLTDRARIRTYLGELLGIPPAK 275 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~~~p~i 275 (317)
..||||++||..+++|+..+|++
T Consensus 168 -~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 168 -VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp -HHHTTCCTTCCEEEEEEESCTTS
T ss_pred -HHHhCCCCCCCEEEEEecCCchh
Confidence 46889999999999999998865
No 132
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.18 E-value=2.7e-12 Score=135.58 Aligned_cols=84 Identities=12% Similarity=0.162 Sum_probs=63.7
Q ss_pred HHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccc--eeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPA--KQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 223 ~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~--ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
++.+.+..+++.... .+..+ .+|||||+||++|||||..+|+ ++||||||+ ||+.....+.+.|+++
T Consensus 443 ~~~~~L~~vgL~~l~--l~r~~--------~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L 512 (916)
T 3pih_A 443 KRLEFLVDVGLEYLT--LSRSA--------TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKL 512 (916)
T ss_dssp HHHHHHHTTTCTTCB--TTSBG--------GGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHT
T ss_pred HHHHHHHHcCCcccc--ccCCc--------ccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 345566667763211 13444 7999999999999999999887 999999999 9999999999999998
Q ss_pred HHh------cCCCcchhhcccCCC
Q 021147 300 LEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 300 ~~~------~~~~~~~~~~~~~~~ 317 (317)
.+. ..|++..+.. +|+|
T Consensus 513 ~~~G~TvivVtHd~~~~~~-aD~i 535 (916)
T 3pih_A 513 RDLGNTVIVVEHDEEVIRN-ADHI 535 (916)
T ss_dssp TTTTCEEEEECCCHHHHHT-CSEE
T ss_pred HhcCCEEEEEeCCHHHHHh-CCEE
Confidence 542 4566655544 6653
No 133
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.18 E-value=3.2e-13 Score=126.06 Aligned_cols=124 Identities=11% Similarity=-0.022 Sum_probs=73.0
Q ss_pred eEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEE---CcccCceeeEecccCCCCcccccceeeccCChH
Q 021147 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSS 174 (317)
Q Consensus 98 l~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i---~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~ 174 (317)
+++.+|++++|+||||||||||+|+|. +.. |++|+|.+ +|++. .... .
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~-----~~~G~i~~~~~~G~~~----------------------t~~~-~ 210 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEE-----LRTQEVSEKTERGRHT----------------------TTGV-R 210 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCC-----CCCSCC---------C----------------------CCCE-E
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-Hhh-----CcccccccccCCCCCc----------------------eeeE-E
Confidence 456789999999999999999999999 988 99999999 77641 1000 0
Q ss_pred HHHHHHHHhhhhccccccccccc--c--chhhHHHHH--Hhhh------ccCC--CChHHHHHHHHHHHHcCCCcccCCC
Q 021147 175 SLRNRMRCKAHKIGCEPSVIRKV--N--FVIFVVDGL--AVLK------SMEG--DSDVEKQYNQIVATTFNCPYLSFRD 240 (317)
Q Consensus 175 ~~r~~~~~~~~~ig~v~Q~~~~~--~--~~~tv~eni--~~~~------~~~~--~~~~~~~~~~~~a~~~~l~~~~l~~ 240 (317)
..+ ++.+|+++|.|.+. . ..+|+ +|+ .|.. .+.. ...+..+++.++++.++++... .+
T Consensus 211 ~~~------~~~~g~v~d~pg~~~~~l~~~lt~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~-~~ 282 (302)
T 2yv5_A 211 LIP------FGKGSFVGDTPGFSKVEATMFVKP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCER-YK 282 (302)
T ss_dssp EEE------ETTTEEEESSCCCSSCCGGGTSCG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHH-HH
T ss_pred EEE------cCCCcEEEECcCcCcCcccccCCH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHH-HH
Confidence 000 01277777776432 1 24566 666 3331 1111 1122234577888888874211 11
Q ss_pred CCCEEEEeccchhcCcHHHHHhhcccc
Q 021147 241 DKPVVVVTHGDLLSLTDRARIRTYLGE 267 (317)
Q Consensus 241 ~~~~~i~~hg~~~~LSgG~~qRl~iar 267 (317)
.|. ..|||..++++.+||
T Consensus 283 ~~~---------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 283 SYL---------KIIKVYLEEIKELCR 300 (302)
T ss_dssp HHH---------HHTTCCCTTHHHHSS
T ss_pred HHH---------HHHHHHHHHHHHHhc
Confidence 233 578987677788887
No 134
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.16 E-value=1e-11 Score=108.47 Aligned_cols=44 Identities=16% Similarity=0.105 Sum_probs=36.2
Q ss_pred ceeeee-EecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECc
Q 021147 93 MTLSDY-DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (317)
Q Consensus 93 L~~isl-~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g 143 (317)
|+.+.. .+++|++++|+||||||||||++.|++ . +..+.++++.
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-----~~~~v~~i~~ 53 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-----SGKKVAYVDT 53 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-----HCSEEEEEES
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-----cCCcEEEEEC
Confidence 677765 799999999999999999999999999 5 4455555544
No 135
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.15 E-value=1.6e-11 Score=103.22 Aligned_cols=65 Identities=22% Similarity=0.191 Sum_probs=53.5
Q ss_pred hhcCcHHHHHhhccc------ceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 252 LLSLTDRARIRTYLG------ELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 252 ~~~LSgG~~qRl~ia------ral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
+.+|||||+||+++| ||++.+|+++||||||+ ||+.++..+.+.+.++.+. ..|+. .....+|++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHHHhCCEE
Confidence 479999999999876 89999999999999999 9999999999999987542 44555 344566653
No 136
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.14 E-value=1.9e-12 Score=120.58 Aligned_cols=43 Identities=26% Similarity=0.261 Sum_probs=31.4
Q ss_pred eEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEE---Cccc
Q 021147 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSV 145 (317)
Q Consensus 98 l~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i---~g~~ 145 (317)
|++.+|++++|+||||||||||+|+|+|+.. |++|+|.+ +|++
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~-----~~~G~i~~~~~~g~~ 209 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK-----LRVSEVSEKLQRGRH 209 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC-----CC-------------
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc-----ccccceecccCCCCC
Confidence 5677899999999999999999999999999 99999999 7764
No 137
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.14 E-value=1.8e-13 Score=129.16 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=48.4
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCC-------CEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECc
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKT-------TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~G-------e~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g 143 (317)
+++.++++..|+.. .+ ++++++.|++| +.++|+||||||||||+++|+|.+... ..+++|.+..++
T Consensus 18 ~lr~~~l~~~~g~~-~~-----~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~-~~~~sg~~~~~~ 90 (334)
T 1in4_A 18 FLRPKSLDEFIGQE-NV-----KKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQ 90 (334)
T ss_dssp TTSCSSGGGCCSCH-HH-----HHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC-EEEEETTTCCSH
T ss_pred HcCCccHHHccCcH-HH-----HHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-EEEEechHhcCH
Confidence 35566777777543 33 89999999887 899999999999999999999998200 005566555433
No 138
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.13 E-value=1.3e-10 Score=103.07 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=35.8
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhh--cccCCCCCCcCcEEEECccc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~G--l~~p~~~~p~~G~I~i~g~~ 145 (317)
-|++|++++|+||||||||||++.|++ +.++.......|.+++++..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 589999999999999999999999999 45511001156778877653
No 139
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.12 E-value=2.8e-11 Score=113.37 Aligned_cols=45 Identities=18% Similarity=0.367 Sum_probs=39.9
Q ss_pred eeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 96 isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
++++.++|++++|+|+|||||||+++.|++++. +..|+|.+.+.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~-----~~g~kV~lv~~D 141 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-----DEGKSVVLAAAD 141 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEEC
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH-----hcCCEEEEEccc
Confidence 566778999999999999999999999999999 888889876654
No 140
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.06 E-value=1.6e-11 Score=105.62 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=30.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
|++++|+||||||||||+++|++ |..|.+.++|.+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~--------~~~g~~~i~~d~ 36 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA--------QLDNSAYIEGDI 36 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH--------HSSSEEEEEHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc--------ccCCeEEEcccc
Confidence 67899999999999999999986 346889988754
No 141
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.06 E-value=9.3e-12 Score=121.25 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=33.5
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
-++++|+++.|+.++|||+||||||||+++|+|..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 67899999999999999999999999999999984
No 142
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.04 E-value=2.6e-11 Score=108.12 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=44.6
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccC------ceeeEecccCCCCcc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG------DGTYFLQEYTIPRGV 161 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~------~~~~~~Q~~~l~~~~ 161 (317)
+++-.-..++|++++|+||||||||||+++|+|+++|+ +..|.|.+.+++. .++|+||++.+|+.+
T Consensus 6 ~~~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~---~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~ 77 (219)
T 1s96_A 6 IHHHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY---DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEM 77 (219)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHSCTT---TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHH
T ss_pred cccccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC---ceEEEEEecCCCCCcccccCceEEECCHHHHHHH
Confidence 34445578999999999999999999999999999821 2688888877642 367777765554433
No 143
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.03 E-value=5.2e-11 Score=103.15 Aligned_cols=32 Identities=28% Similarity=0.533 Sum_probs=26.7
Q ss_pred eeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 97 sl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|+++++|++++|+||||||||||+++|+|+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 67889999999999999999999999999963
No 144
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.03 E-value=2e-10 Score=121.58 Aligned_cols=107 Identities=10% Similarity=0.104 Sum_probs=75.8
Q ss_pred hhhHHHHHHhhhccCCCCh---------HHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceec
Q 021147 200 VIFVVDGLAVLKSMEGDSD---------VEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLG 270 (317)
Q Consensus 200 ~~tv~eni~~~~~~~~~~~---------~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~ 270 (317)
.+||.++++|......... ....++.+.+..+|+.. +..+..+ .+|||||+|||+||++|.
T Consensus 468 ~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl~~L~~vGL~~--l~l~r~~--------~tLSGGEkQRV~LA~aL~ 537 (993)
T 2ygr_A 468 ELSIADCADFLNALTLGPREQAIAGQVLKEIRSRLGFLLDVGLEY--LSLSRAA--------ATLSGGEAQRIRLATQIG 537 (993)
T ss_dssp HHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTGGG--SCTTCBG--------GGCCHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHHHHHhhCCCCc--cccCCCc--------ccCCHHHHHHHHHHHHHh
Confidence 5789999988543321110 11122334566777632 1114444 799999999999999999
Q ss_pred cc--cceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 271 IP--PAKQIFDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 271 ~~--p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
.+ |.++||||||+ ||+.....+.+.|+++.+. .+|++..+. .+|+|
T Consensus 538 ~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrI 592 (993)
T 2ygr_A 538 SGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIE-HADWI 592 (993)
T ss_dssp TCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH-TCSEE
T ss_pred hCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHH-hCCEE
Confidence 98 58999999999 9999999999999998643 566666554 46664
No 145
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.03 E-value=1.4e-10 Score=122.46 Aligned_cols=107 Identities=14% Similarity=0.143 Sum_probs=76.7
Q ss_pred hhhHHHHHHhhhccCCCCh---------HHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceec
Q 021147 200 VIFVVDGLAVLKSMEGDSD---------VEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLG 270 (317)
Q Consensus 200 ~~tv~eni~~~~~~~~~~~---------~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~ 270 (317)
.+||.++++|.....-... ....++.+.+..+|+.... .+..+ .+|||||+|||+||++|.
T Consensus 451 ~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl~~L~~vGL~~l~--ldR~~--------~tLSGGEkQRV~LA~aL~ 520 (972)
T 2r6f_A 451 AMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLT--LSRSA--------GTLSGGEAQRIRLATQIG 520 (972)
T ss_dssp TSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHHHHHHHHTCTTSB--SSSBG--------GGCCHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhhCCCCccc--cCCcc--------ccCCHHHHHHHHHHHHHh
Confidence 4689999998754431110 1122334567778874221 13444 799999999999999999
Q ss_pred ccc--ceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 271 IPP--AKQIFDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 271 ~~p--~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
.+| .++||||||+ ||+.....+.+.|+++.+. .+|++..+. .+|+|
T Consensus 521 ~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrI 575 (972)
T 2r6f_A 521 SRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYL 575 (972)
T ss_dssp TCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SCSEE
T ss_pred hCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEE
Confidence 985 8999999999 9999999999999998642 456665554 46664
No 146
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.00 E-value=1e-10 Score=103.94 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=23.0
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHh-hccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS-KVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~-Gl~~ 128 (317)
.+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -----CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 78999999999999999999999999999999 9984
No 147
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.00 E-value=5.6e-10 Score=103.80 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=49.9
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
+.++++++.|+.. .++++|+ +|++++|+|+|||||||+++.|++++. +..|+|.+.+.+
T Consensus 77 ~~~~~l~~~~~~~--------~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~-----~~~~~v~l~~~d 135 (295)
T 1ls1_A 77 TVYEALKEALGGE--------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-----GKGRRPLLVAAD 135 (295)
T ss_dssp HHHHHHHHHTTSS--------CCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH-----HTTCCEEEEECC
T ss_pred HHHHHHHHHHCCC--------CceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEecCC
Confidence 5677888888532 2568888 999999999999999999999999999 888999987765
No 148
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.99 E-value=4.9e-10 Score=108.53 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=34.1
Q ss_pred EecCCCEEEEEcCCCChHHHHHHH--HhhcccCCCCCCcCcEEEECccc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNR--ISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlkl--L~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
-|++|++++|+||||||||||++. +.++.+++......+.+++++..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 689999999999999999999994 45666621111123477877753
No 149
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.97 E-value=5.9e-10 Score=93.35 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=29.0
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|+++ +|+.++|+||||||||||+++|++.+.
T Consensus 31 l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 31 LRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred HHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6666 899999999999999999999999998
No 150
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.95 E-value=5.2e-11 Score=102.64 Aligned_cols=37 Identities=11% Similarity=-0.006 Sum_probs=31.8
Q ss_pred HhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 261 IRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 261 qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
+...+|++++.+|.++++| +| +|..+...+.+.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 3467899999999999999 99 9999999998887653
No 151
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.94 E-value=8.5e-11 Score=106.98 Aligned_cols=54 Identities=19% Similarity=0.293 Sum_probs=35.7
Q ss_pred CceEEEeE-EEEcCCCCccccccCceeeeeEecC---CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 70 SLTDAKNK-ILSYTPGAWIENVGGMTLSDYDVPK---TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 70 ~~I~~~nl-s~~y~~~~~~~~~~~L~~isl~I~~---Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++|+++|| +|+|.+...+ |+++||+|.+ |++++|+|+|||||||++++|++.+.
T Consensus 16 ~~l~~~~~~~~~~~~~~~~-----l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQI-----LKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ----------------CHH-----HHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEcceeeEEecCcchh-----hhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 47999999 9999333344 9999999999 99999999999999999999999654
No 152
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.93 E-value=1.2e-09 Score=102.47 Aligned_cols=124 Identities=13% Similarity=0.076 Sum_probs=63.4
Q ss_pred CEEEEEcCCCChHHHHHHHHhh-cccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHH
Q 021147 104 TSLLLIGPKGSGKSSLVNRISK-VFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRC 182 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~G-l~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~ 182 (317)
..+.|+||||+|||||+++|++ ++. |+.|.+.++|.+ +.... ..+.
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~-----~~~g~i~~~~~~----------------------~~~~~--~~~~---- 83 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFG-----PGVYRLKIDVRQ----------------------FVTAS--NRKL---- 83 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSC-----TTCCC--------------------------------------------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcC-----CCCCeEEeccee----------------------ecccc--cccc----
Confidence 3489999999999999999999 788 889999998864 11111 1122
Q ss_pred hhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHh
Q 021147 183 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIR 262 (317)
Q Consensus 183 ~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qR 262 (317)
.+++++|...+... . ........ ..+.+.++.+... . ..... ..||+
T Consensus 84 ---~~~~~~~~~~~~~~-~---------~~~~~~~~---~~~~~~i~~~~~~---~--~~~~~-------~~ls~----- 130 (354)
T 1sxj_E 84 ---ELNVVSSPYHLEIT-P---------SDMGNNDR---IVIQELLKEVAQM---E--QVDFQ-------DSKDG----- 130 (354)
T ss_dssp -----CCEECSSEEEEC-C---------C----CCH---HHHHHHHHHHTTT---T--C---------------------
T ss_pred ---eeeeecccceEEec-H---------hhcCCcch---HHHHHHHHHHHHh---c--ccccc-------ccccc-----
Confidence 28888876532110 0 00000010 1133333332210 0 00000 13455
Q ss_pred hcccceeccccceeeccCCCCCCHHHHHHHHHHHHHH
Q 021147 263 TYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYC 299 (317)
Q Consensus 263 l~iaral~~~p~ilIlDEPtsLD~~t~~~l~~~l~~l 299 (317)
+..+|+++|+|||++||+.+...+.+.+++.
T Consensus 131 ------l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 131 ------LAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp ---------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ------cCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 7789999999999999999999888888774
No 153
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.93 E-value=4e-11 Score=121.75 Aligned_cols=48 Identities=21% Similarity=0.349 Sum_probs=43.3
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcC-cEEEECccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER-AQVTYNSSV 145 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~-G~I~i~g~~ 145 (317)
++++++.+.+|+.++|+||||||||||+++|+++++ +.. |.+.+++..
T Consensus 50 l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~~~~~~~~~ 98 (604)
T 3k1j_A 50 VEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP-----TETLEDILVFPNP 98 (604)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC-----CSSCEEEEEECCT
T ss_pred HhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC-----cccCCeEEEeCCc
Confidence 899999999999999999999999999999999998 666 777776653
No 154
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.85 E-value=4.8e-09 Score=89.33 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=32.5
Q ss_pred eeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc
Q 021147 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (317)
Q Consensus 97 sl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G 137 (317)
+|++++|+.++|+||||||||||+++|++.+. |.+|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~-----~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY-----EKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH-----HHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH-----HHcC
Confidence 56778899999999999999999999999997 6665
No 155
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.84 E-value=9.7e-11 Score=105.17 Aligned_cols=56 Identities=14% Similarity=0.193 Sum_probs=41.4
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
.|+++|++..|+ - +|++.+ ++++|+||||||||||+++|+|++. |++|+|.++|.+
T Consensus 9 ~l~l~~~~~~~~----------~---~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~-----~~~G~i~~~g~~ 64 (227)
T 1qhl_A 9 SLTLINWNGFFA----------R---TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI-----PDLTLLHFRNTT 64 (227)
T ss_dssp EEEEEEETTEEE----------E---EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS-----CCTTTC------
T ss_pred EEEEEeeecccC----------C---EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc-----cCCCeEEECCEE
Confidence 477888765442 1 455566 8999999999999999999999999 999999998864
No 156
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.83 E-value=2.3e-09 Score=103.12 Aligned_cols=36 Identities=28% Similarity=0.507 Sum_probs=34.1
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++++|+.+++|++++|+||||||||||+++|+|.+.
T Consensus 159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 159 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp HHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred HHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 899999999999999999999999999999998754
No 157
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.81 E-value=1.5e-09 Score=93.44 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=44.8
Q ss_pred hcCcHHHHHhhcccceecc----ccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGI----PPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~----~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
..||||||||+++|++++. .|+++|||||++ ||+.+...+.+.|+++.+
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~ 116 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK 116 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc
Confidence 6899999999999999974 469999999999 999999999999988743
No 158
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.78 E-value=1.3e-09 Score=102.05 Aligned_cols=43 Identities=23% Similarity=0.296 Sum_probs=27.1
Q ss_pred eEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEE---Cccc
Q 021147 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSV 145 (317)
Q Consensus 98 l~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i---~g~~ 145 (317)
+++.+|++++|+||||||||||+|+|.|+.. |..|+|.+ +|+.
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~-----~~~G~I~~~~~~G~~ 213 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG-----LRTNEISEHLGRGKH 213 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-----------------------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc-----ccccceeeecCCCcc
Confidence 6788999999999999999999999999999 99999998 6653
No 159
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.76 E-value=1.4e-09 Score=108.50 Aligned_cols=48 Identities=17% Similarity=0.269 Sum_probs=45.5
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
++++++.+++|+.++|+||||||||||+++|+|+++ |++|.|.++|..
T Consensus 250 l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~-----~~~giitied~~ 297 (511)
T 2oap_1 250 LAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP-----PDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC-----TTCCEEEEESSC
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC-----CCCCEEEEcCcc
Confidence 788999999999999999999999999999999999 999999998863
No 160
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.72 E-value=1.7e-09 Score=107.57 Aligned_cols=44 Identities=27% Similarity=0.406 Sum_probs=39.1
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
++++++++++| +.|+||||||||||+++|++... .+.|.+++.+
T Consensus 56 ~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-------~~~i~i~g~~ 99 (499)
T 2dhr_A 56 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSD 99 (499)
T ss_dssp TTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-------CCEEEEEGGG
T ss_pred hhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-------CCEEEEehhH
Confidence 77889999999 99999999999999999999875 5778888765
No 161
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.70 E-value=2.7e-09 Score=96.60 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=33.6
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHh---hcccCCCCCCcCcEEE
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRIS---KVFENDKFASERAQVT 140 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~---Gl~~p~~~~p~~G~I~ 140 (317)
++|++++|+|||||||||++++|+ |+.. +++|.|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~-----~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL-----LDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE-----EEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc-----CCCCcee
Confidence 789999999999999999999999 9998 8999988
No 162
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.70 E-value=1.8e-09 Score=93.83 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=43.5
Q ss_pred EeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEE--EECccc
Q 021147 75 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV--TYNSSV 145 (317)
Q Consensus 75 ~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I--~i~g~~ 145 (317)
+|+++.++.-.. .+..++..++|++++|+|+||||||||+++|++.+. ..|.+ +++|.+
T Consensus 3 ~~~~~~~~~~~~------~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~------~~G~~~~~~d~d~ 63 (200)
T 3uie_A 3 TNIKWHECSVEK------VDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY------QKGKLCYILDGDN 63 (200)
T ss_dssp -------CCCCH------HHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEEHHH
T ss_pred CCCcccccccCH------HHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH------hcCceEEEecCch
Confidence 466666654332 788899999999999999999999999999999985 35776 888764
No 163
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.68 E-value=1.8e-08 Score=85.67 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=32.5
Q ss_pred eeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 94 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 94 ~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++++++.+| +++|+||||||||||+++|.+++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 7899999999 999999999999999999999987
No 164
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.68 E-value=1.3e-09 Score=108.54 Aligned_cols=155 Identities=14% Similarity=0.032 Sum_probs=85.6
Q ss_pred eeeeEecCCCEEEEEcCCCChHHHHHHHHhh--cccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 95 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 95 ~isl~I~~Ge~vaIvG~SGsGKSTLlklL~G--l~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
.+++++.++..+.|+|++||||||+++.|.. ++. ++.|++.+.+.+.+. .-|+.+...|++
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~-----~~p~~v~l~liDpK~-~el~~~~~lPhl----------- 221 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYK-----AQPEDVRFIMIDPKM-LELSVYEGIPHL----------- 221 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTT-----CCTTTEEEEEECCSS-SGGGGGTTCTTB-----------
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHh-----CCCceEEEEEECCch-hhhhhhccCCcc-----------
Confidence 4889999999999999999999999998876 555 556777765544221 112222111111
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccch
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDL 252 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~ 252 (317)
.+.+.+++. .+.+.+... ...++++.+++..+++.... +|.- + ..
T Consensus 222 --------------~~~Vvtd~~------~a~~~L~~~-------~~EmerR~~ll~~~Gv~~i~---~yn~----~-~~ 266 (512)
T 2ius_A 222 --------------LTEVVTDMK------DAANALRWC-------VNEMERRYKLMSALGVRNLA---GYNE----K-IA 266 (512)
T ss_dssp --------------SSSCBCSHH------HHHHHHHHH-------HHHHHHHHHHHHHTTCSSHH---HHHH----H-HH
T ss_pred --------------cceeecCHH------HHHHHHHHH-------HHHHHHHHHHHHHcCCccHH---HHHH----H-HH
Confidence 111111110 001111100 12234455666666652111 1110 0 00
Q ss_pred hcCcHHHHHhh----------cccceeccccc-eeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 253 LSLTDRARIRT----------YLGELLGIPPA-KQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 253 ~~LSgG~~qRl----------~iaral~~~p~-ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
..+|+|++|+. ++++++...|. ++++||+.. ++.. ...+.+.+.++.+.
T Consensus 267 ~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~ 327 (512)
T 2ius_A 267 EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQK 327 (512)
T ss_dssp HHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHH
Confidence 25677877653 36788888997 799999999 8743 34566667666554
No 165
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.66 E-value=2.1e-08 Score=87.07 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=31.5
Q ss_pred eeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 96 isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
-.++.++|++++|+|+||||||||+++|++.+ |.+.+++.+
T Consensus 22 ~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---------g~~~i~~d~ 62 (200)
T 4eun_A 22 SMMTGEPTRHVVVMGVSGSGKTTIAHGVADET---------GLEFAEADA 62 (200)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHH---------CCEEEEGGG
T ss_pred hhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh---------CCeEEcccc
Confidence 34667899999999999999999999999986 567887764
No 166
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.62 E-value=9.3e-09 Score=88.61 Aligned_cols=36 Identities=11% Similarity=-0.044 Sum_probs=30.5
Q ss_pred hcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 263 TYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 263 l~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
...|++++.+|.+.++| +| +|+.+...+.+.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45688899999999999 88 99999999988877654
No 167
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.60 E-value=2e-08 Score=86.70 Aligned_cols=31 Identities=32% Similarity=0.432 Sum_probs=27.3
Q ss_pred eEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 98 l~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++|++|++++|+||||||||||+++|++++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4688999999999999999999999999997
No 168
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.58 E-value=2.2e-08 Score=86.80 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=25.7
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++||||++++|++++|+|++||||||+++.|++.+.
T Consensus 15 ~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 15 TENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 999999999999999999999999999999998765
No 169
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.56 E-value=6.6e-08 Score=90.86 Aligned_cols=48 Identities=15% Similarity=0.316 Sum_probs=43.9
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
++++||++++|++++|+|+|||||||++..|++.+. +..|+|.+.+.+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~-----~~g~kVllid~D 142 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA-----ELGYKVLIAAAD 142 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH-----HTTCCEEEEECC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEeCC
Confidence 378999999999999999999999999999999999 888999987765
No 170
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.52 E-value=1.2e-07 Score=88.13 Aligned_cols=39 Identities=15% Similarity=0.458 Sum_probs=33.4
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc-EEEECcc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSS 144 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G-~I~i~g~ 144 (317)
.+|++++|+|+|||||||+++.|++.+. +.+| +|.+-+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~-----~~~G~~V~lv~~ 142 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM-----LEKHKKIAFITT 142 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH-----HTTCCCEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH-----HhcCCEEEEEec
Confidence 4799999999999999999999999998 7778 5664443
No 171
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.50 E-value=3.9e-08 Score=84.46 Aligned_cols=26 Identities=27% Similarity=0.703 Sum_probs=24.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999997
No 172
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.49 E-value=4.4e-08 Score=83.75 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=25.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+|++++|+||||||||||+++|.++++
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 689999999999999999999999986
No 173
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.40 E-value=1.1e-06 Score=86.03 Aligned_cols=131 Identities=10% Similarity=0.043 Sum_probs=79.6
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc-EEEECcccCceeeEecccCCCCcccccceeeccC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRS 171 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G-~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~ 171 (317)
|+++..-+++|+++.|.|++|+|||||+..+++... +..| .|.+.+. +.
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~-----~~~g~~Vl~~s~-------------------------E~ 242 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA-----TKTNENVAIFSL-------------------------EM 242 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH-----HHSSCCEEEEES-------------------------SS
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-----HhCCCcEEEEEC-------------------------CC
Confidence 888888899999999999999999999999999887 5445 4554332 23
Q ss_pred ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccc
Q 021147 172 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGD 251 (317)
Q Consensus 172 ~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~ 251 (317)
+...+..++.. ...++.++. +. ..........++..++..+.. .+..+-..
T Consensus 243 s~~~l~~r~~~--~~~~~~~~~-------------l~----~g~l~~~~~~~~~~a~~~l~~--------~~l~i~d~-- 293 (454)
T 2r6a_A 243 SAQQLVMRMLC--AEGNINAQN-------------LR----TGKLTPEDWGKLTMAMGSLSN--------AGIYIDDT-- 293 (454)
T ss_dssp CHHHHHHHHHH--HHHTCCHHH-------------HH----TSCCCHHHHHHHHHHHHHHHS--------SCEEEECC--
T ss_pred CHHHHHHHHHH--HHcCCCHHH-------------Hh----cCCCCHHHHHHHHHHHHHHhc--------CCEEEECC--
Confidence 44444444211 112322221 11 011122333445555555432 12211111
Q ss_pred hhcCcHHHHHhhcccceec--cccceeeccCCCC-CC
Q 021147 252 LLSLTDRARIRTYLGELLG--IPPAKQIFDIPES-SD 285 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~--~~p~ilIlDEPts-LD 285 (317)
..+|.++.+ +.+|.+. .+|+++|+|+++. .+
T Consensus 294 -~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 294 -PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp -TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred -CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhcc
Confidence 368888876 5566655 6899999999998 63
No 174
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.40 E-value=8.5e-08 Score=91.50 Aligned_cols=59 Identities=19% Similarity=0.165 Sum_probs=49.0
Q ss_pred CCCEEEEecc---chhcCcHHHHHhh------cccceeccc-cceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 241 DKPVVVVTHG---DLLSLTDRARIRT------YLGELLGIP-PAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 241 ~~~~~i~~hg---~~~~LSgG~~qRl------~iaral~~~-p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
.+.+.+...+ .+..|||||+||+ ++|+++..+ |+++|||||++ ||+.+...+.+.|.++
T Consensus 264 ~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~ 333 (371)
T 3auy_A 264 DFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKV 333 (371)
T ss_dssp TCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHC
T ss_pred ceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHh
Confidence 4555555521 2468999999987 667999999 99999999999 9999999999999885
No 175
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.39 E-value=1.1e-07 Score=82.81 Aligned_cols=42 Identities=21% Similarity=0.216 Sum_probs=37.2
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
..++|++++|+|+||||||||+++|.+++. +..|.|.+.+.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~-----~~~~~v~~~~~d 59 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR-----EQGISVCVFHMD 59 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH-----HTTCCEEEEEGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh-----hcCCeEEEeccC
Confidence 467889999999999999999999999998 888888876654
No 176
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.38 E-value=4e-07 Score=80.34 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=29.3
Q ss_pred ceee-eeEecCCCEEEEEcCCCChHHHHHH-HHhhccc
Q 021147 93 MTLS-DYDVPKTTSLLLIGPKGSGKSSLVN-RISKVFE 128 (317)
Q Consensus 93 L~~i-sl~I~~Ge~vaIvG~SGsGKSTLlk-lL~Gl~~ 128 (317)
|+.+ .--+++|++++|+||||||||||+. ++.+..+
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~ 49 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLK 49 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6666 6679999999999999999999965 4455554
No 177
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.36 E-value=3.4e-07 Score=80.25 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=27.0
Q ss_pred eeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 97 sl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|+...+|++++|+||||||||||+++|.+.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34556899999999999999999999999875
No 178
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.33 E-value=1.1e-07 Score=91.55 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=49.5
Q ss_pred CCceEEEeEEEEcCCCCccccccCce--------------eeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMT--------------LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~--------------~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+.+.|+||++.|+..... |+ |+++.|.+|+.++|+|++|||||||+++|++...
T Consensus 131 ~~ri~Fe~ltp~yP~er~~-----Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 131 RNKILFENLTPLHANSRLR-----MERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TTSCCTTTSCEESCCSBCC-----CCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCCccc-----cccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 3468999999999876654 88 8999999999999999999999999999999874
No 179
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.31 E-value=1.3e-07 Score=88.92 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=39.5
Q ss_pred ceeeeeEecCCC------EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECc
Q 021147 93 MTLSDYDVPKTT------SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (317)
Q Consensus 93 L~~isl~I~~Ge------~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g 143 (317)
|++++..+.+++ ++||+||||||||||+++|.+++... |+.|.|.+-+
T Consensus 76 l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~---~~~~~v~~i~ 129 (321)
T 3tqc_A 76 LQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRW---PDHPNVEVIT 129 (321)
T ss_dssp HHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTS---TTCCCEEEEE
T ss_pred HHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhccc---CCCCeEEEEe
Confidence 888888888887 99999999999999999999999732 4566655433
No 180
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.28 E-value=1.2e-06 Score=83.64 Aligned_cols=41 Identities=24% Similarity=0.394 Sum_probs=30.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCC------CCCCcCcEEEECccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFEND------KFASERAQVTYNSSV 145 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~------~~~p~~G~I~i~g~~ 145 (317)
+++|+|++|||||||++.|+|...+. ...|+.|.|.++|.+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~ 227 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK 227 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE
Confidence 49999999999999999999986411 112567888888754
No 181
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.28 E-value=2.4e-07 Score=93.19 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=37.8
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc-EEE-ECccc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVT-YNSSV 145 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G-~I~-i~g~~ 145 (317)
.+++|++++|+|+||||||||+++|++++. |++| +|. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~-----~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM-----EMGGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH-----TTCSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc-----ccCCceEEEECCcH
Confidence 688999999999999999999999999999 8886 674 88864
No 182
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.26 E-value=4.4e-07 Score=79.34 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=26.8
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++|++++|+||||||||||+++|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999999987
No 183
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.26 E-value=2.3e-07 Score=82.40 Aligned_cols=41 Identities=20% Similarity=0.318 Sum_probs=34.5
Q ss_pred eeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 96 isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
-+.+.++|++++|+|+||||||||+++|+|+ .|+|.+.+.+
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~---------~g~v~~~~~~ 53 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY---------KNDICLLTEP 53 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG---------TTTEEEECCT
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc---------cCCeEEEecC
Confidence 3446689999999999999999999999998 3668877764
No 184
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.23 E-value=9e-08 Score=83.95 Aligned_cols=34 Identities=18% Similarity=0.416 Sum_probs=29.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhcc---cCCCCCCcCcEEEE
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVF---ENDKFASERAQVTY 141 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~---~p~~~~p~~G~I~i 141 (317)
+.+++|+|+|||||||++++|++.+ . ++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~-----~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHL-----LDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEE-----EEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCc-----ccCcceee
Confidence 5689999999999999999999887 4 66777664
No 185
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.13 E-value=1.2e-06 Score=84.39 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=36.7
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhccc------CC-CCCCcCcEEEECcc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE------ND-KFASERAQVTYNSS 144 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~------p~-~~~p~~G~I~i~g~ 144 (317)
.+++|..++|||+||||||||+++|+|... |. ...|+.|.|.+.|.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~ 68 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDE 68 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCc
Confidence 667899999999999999999999999211 00 12389999999873
No 186
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.10 E-value=4.7e-06 Score=79.06 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=26.7
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
-+++|+++.|.||+|||||||+..++....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999888876655
No 187
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.09 E-value=1.3e-06 Score=73.56 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=30.3
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
.+|++++|+|+|||||||++++|++.+ |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---------CcEEEeCcc
Confidence 568999999999999999999999875 456777654
No 188
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.08 E-value=1.5e-06 Score=72.71 Aligned_cols=27 Identities=26% Similarity=0.692 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.|++++|+|+||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 468899999999999999999999976
No 189
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.04 E-value=2e-06 Score=72.79 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=31.9
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc--EEEECcc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSS 144 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G--~I~i~g~ 144 (317)
++|++++|+|++||||||++++|.+.+. + .| .|.+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~-----~-~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV-----C-HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH-----H-TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh-----h-CCCcEEEECCh
Confidence 4689999999999999999999999987 5 45 6666664
No 190
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.03 E-value=8.9e-07 Score=83.53 Aligned_cols=62 Identities=15% Similarity=0.143 Sum_probs=48.8
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
++.+++.+.|... .+ ++++++.+.+|.+++|+|++|||||||++.|++.+. +..++|.+-+.
T Consensus 31 ie~~~~~~~~~~~-~~-----~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~-----~~~~~v~v~~~ 92 (341)
T 2p67_A 31 VESRHPRHQALST-QL-----LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI-----REGLKVAVIAV 92 (341)
T ss_dssp HHCCCHHHHHHHH-HH-----HHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH-----HTTCCEEEEEE
T ss_pred hhcCCchhhhHHH-HH-----HHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCeEEEEee
Confidence 4445555555432 23 889999999999999999999999999999999998 76777766544
No 191
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.02 E-value=1.9e-06 Score=74.66 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=28.5
Q ss_pred eEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 98 l~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
=++++|++++|+|+|||||||++++|.+.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4788899999999999999999999999874
No 192
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.96 E-value=1.9e-06 Score=75.25 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=38.7
Q ss_pred eeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc--EEEECccc
Q 021147 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSSV 145 (317)
Q Consensus 97 sl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G--~I~i~g~~ 145 (317)
.+.+++|.+++|+|++||||||+++.|.+.+. |..| .+.+++..
T Consensus 19 ~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~-----~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 19 ELRNQRGLTIWLTGLSASGKSTLAVELEHQLV-----RDRRVHAYRLDGDN 64 (211)
T ss_dssp HHHTSSCEEEEEECSTTSSHHHHHHHHHHHHH-----HHHCCCEEEECHHH
T ss_pred cccCCCCCEEEEECCCCCCHHHHHHHHHHHhc-----cccCCcEEEECChH
Confidence 35678899999999999999999999999998 7788 88888653
No 193
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.95 E-value=5.2e-06 Score=69.09 Aligned_cols=34 Identities=32% Similarity=0.379 Sum_probs=27.0
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+++.++++.+| +.+|+|||||||||++.+|.-.+
T Consensus 14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 44556666665 89999999999999999998543
No 194
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.95 E-value=1.6e-05 Score=82.88 Aligned_cols=44 Identities=11% Similarity=0.004 Sum_probs=34.2
Q ss_pred hcCcHHHHHhhcccceeccccceeeccCCCC--CCHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGIPPAKQIFDIPES--SDPENELIIVDML 296 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p~ilIlDEPts--LD~~t~~~l~~~l 296 (317)
.-+|.|+.+|..++++++.+++++|+|||.. +|......+...+
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l 234 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQV 234 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHH
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHH
Confidence 4567889999999999999999999999984 7765444443333
No 195
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.93 E-value=5e-06 Score=74.08 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=31.9
Q ss_pred ceeeeeEec---CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEE
Q 021147 93 MTLSDYDVP---KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 141 (317)
Q Consensus 93 L~~isl~I~---~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i 141 (317)
|.++||.+. +|.+++|.|++||||||+++.|...+. + .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~-----~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV-----K-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT-----T-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh-----c-CCCcee
Confidence 778888887 899999999999999999999999998 6 555553
No 196
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.92 E-value=2.1e-06 Score=86.05 Aligned_cols=45 Identities=27% Similarity=0.404 Sum_probs=40.6
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g 143 (317)
++++++++ +|+.++|+||||||||||+++|++.+. +..|.|.+.|
T Consensus 99 l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~i~~~~ 143 (543)
T 3m6a_A 99 VQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG-----RKFVRISLGG 143 (543)
T ss_dssp HHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT-----CEEEEECCCC
T ss_pred HHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEecc
Confidence 78888888 899999999999999999999999998 7778777666
No 197
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.87 E-value=5.6e-06 Score=78.42 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=34.8
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
+++.+++|+|++|||||||++.|.|.+. +..|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~-----~~~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT-----ERGHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh-----hcCCeEEEEeec
Confidence 3467899999999999999999999998 788888877654
No 198
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.85 E-value=9.4e-06 Score=76.76 Aligned_cols=36 Identities=14% Similarity=0.078 Sum_probs=32.1
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|+.+.--+.+|+++.|.|++|+|||||+.-++....
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 777766899999999999999999999998887765
No 199
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.82 E-value=3.1e-06 Score=88.71 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=34.8
Q ss_pred eeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 97 sl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
+|.+++|+.+.|+||||||||||+++|++.+. +. -+.+++.+
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~-----~~--~i~v~~~~ 273 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETG-----AF--FFLINGPE 273 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT-----CE--EEEEEHHH
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC-----Cc--EEEEEchH
Confidence 45789999999999999999999999999986 32 36666653
No 200
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.79 E-value=1.7e-05 Score=75.76 Aligned_cols=129 Identities=14% Similarity=0.198 Sum_probs=94.7
Q ss_pred CceeeEecccCCCCccccccee-----eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELV-----IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 220 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~-----~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~ 220 (317)
..++|+||++++++..++.++. ....+....++++.++++.+|+-. +.+.++...|++
T Consensus 105 ~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~-----------------~~~~~~~~LSGG 167 (366)
T 3tui_C 105 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-----------------KHDSYPSNLSGG 167 (366)
T ss_dssp TTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG-----------------GTTCCTTTSCHH
T ss_pred CcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------------HhcCChhhCCHH
Confidence 4689999999999888877743 234455666677777777777521 134567888999
Q ss_pred HHHHHHHHHHcCC-Cccc-----------------------C--CCCCCEEEEecc--chhcCcHHHHHhhcccceeccc
Q 021147 221 KQYNQIVATTFNC-PYLS-----------------------F--RDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 221 ~~~~~~~a~~~~l-~~~~-----------------------l--~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~~ 272 (317)
++|++++|+++.. |... + ..|.+++++||. .+..+|+.... +.-++.+..+
T Consensus 168 qkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~v-l~~G~iv~~g 246 (366)
T 3tui_C 168 QKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAV-ISNGELIEQD 246 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEE-EETTEEEECC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEE-EECCEEEEEc
Confidence 9999999999877 3110 2 348899999995 55667766655 7778999999
Q ss_pred cceeeccCCCCCCHHHHHHHHH
Q 021147 273 PAKQIFDIPESSDPENELIIVD 294 (317)
Q Consensus 273 p~ilIlDEPtsLD~~t~~~l~~ 294 (317)
+.-.++..|.+ ++++..+..
T Consensus 247 ~~~ev~~~p~~--~~~~~~~~~ 266 (366)
T 3tui_C 247 TVSEVFSHPKT--PLAQKFIQS 266 (366)
T ss_dssp BHHHHHSSCCS--HHHHHHHHH
T ss_pred CHHHHHhCCCc--HHHHHHHhh
Confidence 99889999988 777766544
No 201
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.79 E-value=5.3e-06 Score=71.34 Aligned_cols=60 Identities=12% Similarity=0.179 Sum_probs=38.7
Q ss_pred EEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhc----ccCCCCCCcCcEEEECcc
Q 021147 78 ILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV----FENDKFASERAQVTYNSS 144 (317)
Q Consensus 78 s~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl----~~p~~~~p~~G~I~i~g~ 144 (317)
++.|++-..+ ++++|+..++.+ ++|+|++|||||||++.+.+- +.| ...++.+.+.++|.
T Consensus 6 ~~~~~~~~~~-----l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~-t~~~~~~~~~~~~~ 69 (198)
T 1f6b_A 6 DWIYSGFSSV-----LQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVP-TLHPTSEELTIAGM 69 (198)
T ss_dssp -------CHH-----HHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------C-CCCCSCEEEEETTE
T ss_pred HHHHHHHHHH-----HHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCC-CCCceeEEEEECCE
Confidence 4456655444 899999988885 789999999999999999873 221 11245667777663
No 202
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.77 E-value=1e-05 Score=78.70 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=47.1
Q ss_pred EEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 73 ~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
-.+++++.|+.. -++++|+ ++++++++|+|||||||++..|++.+. +..++|.+.+.+
T Consensus 78 v~~~L~~~~~~~--------~~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~-----~~g~~Vllvd~D 135 (425)
T 2ffh_A 78 VYEALKEALGGE--------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-----GKGRRPLLVAAD 135 (425)
T ss_dssp HHHHHHHHTTSS--------CCCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEEECC
T ss_pred HHHHHHHHhCCC--------cccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEeecc
Confidence 344677777543 2457777 899999999999999999999999999 888899987654
No 203
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.77 E-value=1.2e-05 Score=68.65 Aligned_cols=32 Identities=28% Similarity=0.534 Sum_probs=26.8
Q ss_pred eeeeEecCCCEEEEEcCCCChHHHHHHHHhhc
Q 021147 95 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 95 ~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl 126 (317)
++|++.++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 48899999999999999999999999999876
No 204
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.74 E-value=2.7e-05 Score=74.05 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=34.9
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEE-EECcc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-TYNSS 144 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I-~i~g~ 144 (317)
-+++|+++.|.||+|||||||+..+++... +..|.+ ++++.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~-----~~gg~VlyId~E 98 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ-----KMGGVAAFIDAE 98 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHH-----HTTCCEEEEESS
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHH-----hcCCeEEEEecc
Confidence 488999999999999999999999999988 666765 55543
No 205
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.73 E-value=1.4e-05 Score=68.02 Aligned_cols=41 Identities=24% Similarity=0.437 Sum_probs=33.6
Q ss_pred eEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEE-EECc
Q 021147 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-TYNS 143 (317)
Q Consensus 98 l~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I-~i~g 143 (317)
+...+|.+++|+|++||||||+++.|+..+. +..+.+ .+++
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~-----~~~~~~~~~~~ 49 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQ-----KEGYRVEVLDG 49 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCeEEEeeH
Confidence 4456889999999999999999999999988 666665 4444
No 206
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.73 E-value=1.4e-05 Score=69.28 Aligned_cols=30 Identities=27% Similarity=0.659 Sum_probs=26.5
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
...+|.+++|+||||||||||++.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 457899999999999999999999988764
No 207
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.73 E-value=8.6e-06 Score=83.54 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=33.5
Q ss_pred eeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 97 sl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
|+++++|..++|+|++|||||||++.|.+...+. +..|+| .+|.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~---~~~G~V-~~g~ 46 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK---ERRGRV-EEGT 46 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS---SSCCCG-GGTC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC---Ccccee-cCCc
Confidence 4678899999999999999999999999887621 366777 4443
No 208
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.71 E-value=1.2e-05 Score=76.06 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=27.1
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhh--ccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK--VFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~G--l~~ 128 (317)
|++++++++ .++|||++|||||||++.|.| +++
T Consensus 27 l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp 61 (360)
T 3t34_A 27 LPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLP 61 (360)
T ss_dssp C----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSC
T ss_pred cccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCC
Confidence 999999999 899999999999999999999 555
No 209
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.70 E-value=8.2e-06 Score=75.67 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=47.1
Q ss_pred EEEeEEEEcCCCCccccccCcee-eeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 73 DAKNKILSYTPGAWIENVGGMTL-SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 73 ~~~nls~~y~~~~~~~~~~~L~~-isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
-.+++...|++. .++ ++|+.+ |++++++|++||||||++..|++.+. +..++|.+.+.+
T Consensus 76 ~~~~l~~~~~~~--------~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~-----~~g~~v~l~~~D 135 (297)
T 1j8m_F 76 VYDELSNLFGGD--------KEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK-----KKGFKVGLVGAD 135 (297)
T ss_dssp HHHHHHHHTTCS--------CCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH-----HTTCCEEEEECC
T ss_pred HHHHHHHHhccc--------cccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEecC
Confidence 345566667543 345 788876 99999999999999999999999998 778888876654
No 210
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.69 E-value=2.4e-05 Score=66.59 Aligned_cols=50 Identities=12% Similarity=0.204 Sum_probs=27.5
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCC---CCCCcCcEEEECc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFEND---KFASERAQVTYNS 143 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~---~~~p~~G~I~i~g 143 (317)
++++|+..++. .++|+|++|||||||++.+.+-.... ...++.+.+.++|
T Consensus 14 l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~ 66 (190)
T 1m2o_B 14 LASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN 66 (190)
T ss_dssp ----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETT
T ss_pred HHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECC
Confidence 88999998887 57899999999999999998732100 1113456666665
No 211
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.67 E-value=1.9e-05 Score=68.09 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
+++|+|+|||||||++++|+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999984
No 212
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.66 E-value=2.8e-05 Score=67.84 Aligned_cols=34 Identities=32% Similarity=0.379 Sum_probs=26.8
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+.+.++++.+| +.+|+|||||||||++.+|.-.+
T Consensus 14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 44556666664 89999999999999999886544
No 213
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.56 E-value=0.00018 Score=70.08 Aligned_cols=38 Identities=18% Similarity=0.403 Sum_probs=33.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
++.+++++|++||||||++..|++.+. +..++|.+-+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~-----~~G~kVllv~~ 133 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK-----KRGYKVGLVAA 133 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEEec
Confidence 578999999999999999999999998 77788876543
No 214
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.56 E-value=3.3e-05 Score=66.41 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 021147 105 SLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~G 125 (317)
+++|+|+|||||||++++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 215
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.53 E-value=6.6e-06 Score=78.25 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=35.5
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+.+.++|++..|.... + +++++|+| +|+|+||+|||||++.|.+...
T Consensus 15 ~~~v~~~~l~~~~~~k~-~-----~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 15 PGYVGFANLPNQVHRKS-V-----KKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp ------CCHHHHHHTHH-H-----HHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred CceEEeccchHHhCCee-e-----cCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 35688999998886443 3 88899887 9999999999999999988754
No 216
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.52 E-value=3.2e-05 Score=73.63 Aligned_cols=120 Identities=17% Similarity=0.224 Sum_probs=86.7
Q ss_pred CceeeEecccCCCCcccccceee-----ccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVI-----RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 220 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~-----~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~ 220 (317)
+.++|+||++.+||++++.++.. ...+....++++.++++.+|+-. +.+.++.+.|++
T Consensus 80 r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-----------------~~~r~~~~LSGG 142 (359)
T 3fvq_A 80 RRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISE-----------------LAGRYPHELSGG 142 (359)
T ss_dssp SCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGG-----------------GTTSCGGGSCHH
T ss_pred CCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCch-----------------HhcCChhhCCHH
Confidence 56899999999999988887542 22344555666777777776521 134556778999
Q ss_pred HHHHHHHHHHcCC-Cccc-------------------------CCCCCCEEEEecc--chhcCcHHHHHhhcccceeccc
Q 021147 221 KQYNQIVATTFNC-PYLS-------------------------FRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 221 ~~~~~~~a~~~~l-~~~~-------------------------l~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~~ 272 (317)
++|++++|+++.. |... ...+.+++++||. ++..+|+.... |.-++.+..+
T Consensus 143 q~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~v-l~~G~i~~~g 221 (359)
T 3fvq_A 143 QQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAV-MKQGRILQTA 221 (359)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEE-EETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEE-EECCEEEEEe
Confidence 9999999999877 3110 2358899999995 56677776655 6778888888
Q ss_pred cceeeccCCCC
Q 021147 273 PAKQIFDIPES 283 (317)
Q Consensus 273 p~ilIlDEPts 283 (317)
++..++..|.+
T Consensus 222 ~~~el~~~p~~ 232 (359)
T 3fvq_A 222 SPHELYRQPAD 232 (359)
T ss_dssp CHHHHHHSCSC
T ss_pred CHHHHHhCccc
Confidence 88888888876
No 217
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.51 E-value=1.5e-05 Score=76.46 Aligned_cols=125 Identities=13% Similarity=0.187 Sum_probs=90.6
Q ss_pred CceeeEecccCCCCccccccee-----eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELV-----IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 220 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~-----~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~ 220 (317)
+.++|+||++.|||++++.++. ....+....++++.++++.+++-. +.+.++.+.|++
T Consensus 75 r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------------~~~r~p~~LSGG 137 (381)
T 3rlf_A 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-----------------LLDRKPKALSGG 137 (381)
T ss_dssp SCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGG-----------------GTTCCGGGSCHH
T ss_pred CCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------------hhcCChhHCCHH
Confidence 5689999999999998888754 234556666777777777777521 124556778999
Q ss_pred HHHHHHHHHHcCC-Cccc-----------------------C--CCCCCEEEEecc--chhcCcHHHHHhhcccceeccc
Q 021147 221 KQYNQIVATTFNC-PYLS-----------------------F--RDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 221 ~~~~~~~a~~~~l-~~~~-----------------------l--~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~~ 272 (317)
++|++++|+++.. |... + ..|.+++++||. ++..+|+.... |.-|+.+..+
T Consensus 138 qrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~v-l~~G~i~~~g 216 (381)
T 3rlf_A 138 QRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVV-LDAGRVAQVG 216 (381)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEE-EETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEE-EECCEEEEEe
Confidence 9999999998765 2110 2 238899999995 56677777665 7778888888
Q ss_pred cceeeccCCCCCCHHHHH
Q 021147 273 PAKQIFDIPESSDPENEL 290 (317)
Q Consensus 273 p~ilIlDEPtsLD~~t~~ 290 (317)
++..+++.|.+ +....
T Consensus 217 ~~~~l~~~p~~--~~v~~ 232 (381)
T 3rlf_A 217 KPLELYHYPAD--RFVAG 232 (381)
T ss_dssp CHHHHHHCCSB--HHHHH
T ss_pred CHHHHHhCCcc--HHHHH
Confidence 88888888887 54443
No 218
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.50 E-value=0.00025 Score=66.30 Aligned_cols=24 Identities=21% Similarity=0.555 Sum_probs=23.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+.|.||+|+|||||++.+++...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 799999999999999999999987
No 219
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.49 E-value=4.6e-05 Score=65.56 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+++|+|++||||||+++.|++.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
No 220
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.48 E-value=1.9e-05 Score=75.14 Aligned_cols=36 Identities=25% Similarity=0.586 Sum_probs=33.6
Q ss_pred ceeeeeEecCCCE--EEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~--vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++.+++.+++|++ ++|+|++||||||++++|++.+.
T Consensus 12 l~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 12 LQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 7889999999999 99999999999999999999865
No 221
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.48 E-value=4.7e-05 Score=63.78 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.3
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
++|..++|+|++|||||||++.|.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357889999999999999999999864
No 222
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.45 E-value=8.1e-05 Score=63.62 Aligned_cols=39 Identities=13% Similarity=0.201 Sum_probs=29.1
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
.+++|+|+||||||||++.|.+.+.+.. -.-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g--~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARG--IRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccC--CceeEEeeCCC
Confidence 5899999999999999999999876110 12356666554
No 223
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.43 E-value=4.7e-05 Score=68.36 Aligned_cols=40 Identities=23% Similarity=0.352 Sum_probs=32.0
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
..+++.++.|+|++||||||+++.|...+. .+.+.+++..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-------~~~~~~~~D~ 67 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-------GNIVIIDGDS 67 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-------TCCEEECGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-------CCcEEEecHH
Confidence 445667899999999999999999999875 2456777753
No 224
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.41 E-value=9.7e-05 Score=71.76 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=30.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccC----C---CCCCcCcEEEECccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFEN----D---KFASERAQVTYNSSV 145 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p----~---~~~p~~G~I~i~g~~ 145 (317)
.++|+|+||||||||++.|.|.... . ...+.+|.+.++|+.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 7999999999999999999998520 0 012567889988864
No 225
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.39 E-value=7.5e-05 Score=72.00 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=34.0
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhccc-----C-CCCCCcCcEEEECcc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE-----N-DKFASERAQVTYNSS 144 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~-----p-~~~~p~~G~I~i~g~ 144 (317)
.+..|..++|||+||+|||||++.|+|.-. | ....|..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 567788999999999999999999999821 0 012277888888764
No 226
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.38 E-value=6.9e-05 Score=63.20 Aligned_cols=27 Identities=22% Similarity=0.613 Sum_probs=23.2
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357889999999999999999998544
No 227
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.38 E-value=8.4e-05 Score=61.52 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++|+|++||||||+++.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987764
No 228
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.38 E-value=9.2e-05 Score=68.87 Aligned_cols=36 Identities=14% Similarity=0.257 Sum_probs=31.1
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|+.+.--+++|+++.|.|++|+|||||+.-++.-..
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 777776799999999999999999999987775543
No 229
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.36 E-value=0.00011 Score=61.46 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|||||||++.+.|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 230
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.36 E-value=0.0001 Score=61.62 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|.++.|+|++||||||+.+.|...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
No 231
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.35 E-value=7e-05 Score=66.85 Aligned_cols=44 Identities=27% Similarity=0.403 Sum_probs=29.8
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
++++++.+++| +.|+||+|||||||+++|++.+. .. -+.+++.+
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~-----~~--~~~i~~~~ 80 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK-----VP--FFTISGSD 80 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT-----CC--EEEECSCS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC-----CC--EEEEeHHH
Confidence 34444555555 88999999999999999999876 21 36666653
No 232
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.34 E-value=3.1e-05 Score=72.29 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=34.2
Q ss_pred ceeeeeEecCCCE--EEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~--vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++.++..|+.|++ +.|.||+|+||||+++++++.+.
T Consensus 34 ~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 34 ITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 8889999999998 99999999999999999999987
No 233
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.31 E-value=6.9e-05 Score=69.26 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+.+++|+|++|||||||++.|.|.-
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 4489999999999999999999974
No 234
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.31 E-value=0.00012 Score=64.85 Aligned_cols=29 Identities=41% Similarity=0.565 Sum_probs=24.5
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+-++|.+++|+|++||||||++++|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999999999999999999999743
No 235
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.30 E-value=0.00011 Score=61.86 Aligned_cols=24 Identities=33% Similarity=0.704 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++|||||||++.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~ 27 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKK 27 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 489999999999999999999753
No 236
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.29 E-value=0.00012 Score=60.57 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 237
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.27 E-value=6.5e-05 Score=64.75 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=22.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++|+|++||||||+++.|...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999886
No 238
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.25 E-value=0.0001 Score=66.03 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=21.6
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
-+++|+|||||||||+++.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999554
No 239
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.23 E-value=0.00017 Score=60.76 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|.+++|.|++||||||+++.|.-.+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999988654
No 240
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.21 E-value=0.00016 Score=59.50 Aligned_cols=19 Identities=37% Similarity=0.634 Sum_probs=18.3
Q ss_pred EEEEEcCCCChHHHHHHHH
Q 021147 105 SLLLIGPKGSGKSSLVNRI 123 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL 123 (317)
+++|+|++||||||+++.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 241
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.19 E-value=0.00016 Score=61.11 Aligned_cols=28 Identities=14% Similarity=0.373 Sum_probs=24.2
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++.++.|+|++||||||+++.|...+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4577899999999999999999987543
No 242
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.19 E-value=0.0002 Score=60.39 Aligned_cols=27 Identities=33% Similarity=0.576 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+..+.|+|++||||||+.+.|+..+.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999987654
No 243
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.17 E-value=0.00018 Score=61.12 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++|+|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999999654
No 244
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.17 E-value=0.00014 Score=61.18 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.7
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
..+..+.|+|++||||||+++.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998554
No 245
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.15 E-value=0.00021 Score=62.07 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhh
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~G 125 (317)
.+-+++|+|++||||||+++.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999987
No 246
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.15 E-value=0.00023 Score=67.61 Aligned_cols=32 Identities=31% Similarity=0.364 Sum_probs=27.6
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhh
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~G 125 (317)
+++.++++.+| +.+|+|+|||||||++.+|.=
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 66677887775 899999999999999999874
No 247
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.14 E-value=0.00023 Score=65.51 Aligned_cols=41 Identities=20% Similarity=0.461 Sum_probs=33.0
Q ss_pred eeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 97 sl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
++.+.++..+.|.||+|||||||+++|++... .+-+.+++.
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~-------~~~i~v~~~ 83 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-------ANFISIKGP 83 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT-------CEEEEECHH
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHhC-------CCEEEEEhH
Confidence 34567788999999999999999999999865 455666654
No 248
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.11 E-value=0.0002 Score=60.09 Aligned_cols=24 Identities=38% Similarity=0.665 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 249
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.10 E-value=0.00029 Score=60.08 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+|.+++|+|++||||||+++.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999765
No 250
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.08 E-value=0.00026 Score=60.31 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=21.2
Q ss_pred CEEEEEcCCCChHHHHHHHHhhc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.+++|+|++||||||+.++|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 47999999999999999999875
No 251
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.07 E-value=0.00029 Score=59.59 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=24.6
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++.+++|+|++||||||+.+.|+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999987654
No 252
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.07 E-value=0.00022 Score=67.62 Aligned_cols=121 Identities=19% Similarity=0.273 Sum_probs=81.3
Q ss_pred cCceeeEecccCCCCcccccceee-----ccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChH
Q 021147 145 VGDGTYFLQEYTIPRGVRHGELVI-----RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 219 (317)
Q Consensus 145 ~~~~~~~~Q~~~l~~~~~~~~~~~-----~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~ 219 (317)
.+.++|+||++.+|+++++.++.. ...+....++++.++++.+++-. +.+.++...|+
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------------~~~~~~~~LSG 143 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH-----------------VLNHFPRELSG 143 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGG-----------------GTTSCGGGSCH
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------------HhcCChhhCCH
Confidence 356899999999999888877532 12344455566666677666411 12345567899
Q ss_pred HHHHHHHHHHHcCC-Cccc-----------------------C--CCCCCEEEEecc--chhcCcHHHHHhhcccceecc
Q 021147 220 EKQYNQIVATTFNC-PYLS-----------------------F--RDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGI 271 (317)
Q Consensus 220 ~~~~~~~~a~~~~l-~~~~-----------------------l--~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~ 271 (317)
+++|++++|+++.. |... + ..+.+++++||. ++..+++.... +.-++.+..
T Consensus 144 Gq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~v-l~~G~i~~~ 222 (353)
T 1oxx_K 144 AQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGV-LVKGKLVQV 222 (353)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEE-EETTEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE-EECCEEEEE
Confidence 99999999999877 2110 2 237899999995 45566665544 556777777
Q ss_pred ccceeeccCCCC
Q 021147 272 PPAKQIFDIPES 283 (317)
Q Consensus 272 ~p~ilIlDEPts 283 (317)
+++-.+++.|.+
T Consensus 223 g~~~~l~~~p~~ 234 (353)
T 1oxx_K 223 GKPEDLYDNPVS 234 (353)
T ss_dssp ECHHHHHHSCSS
T ss_pred cCHHHHHhCccc
Confidence 777777777766
No 253
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.06 E-value=0.00027 Score=63.54 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++|+||||||||||.+.|++-+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 689999999999999999988654
No 254
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.06 E-value=0.00016 Score=68.90 Aligned_cols=120 Identities=16% Similarity=0.229 Sum_probs=81.2
Q ss_pred CceeeEecccCCCCcccccceee-----ccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVI-----RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 220 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~-----~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~ 220 (317)
+.++|+||++.+|+++++.++.. ...+....++++.++++.+++-. +.+.++...|++
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------------~~~r~~~~LSGG 137 (362)
T 2it1_A 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDK-----------------LLNRYPWQLSGG 137 (362)
T ss_dssp TTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT-----------------CTTCCGGGSCHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------------HhhCChhhCCHH
Confidence 56899999999999888877531 23344455556666666666521 123455678999
Q ss_pred HHHHHHHHHHcCC-Cccc-----------------------C--CCCCCEEEEecc--chhcCcHHHHHhhcccceeccc
Q 021147 221 KQYNQIVATTFNC-PYLS-----------------------F--RDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 221 ~~~~~~~a~~~~l-~~~~-----------------------l--~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~~ 272 (317)
++|++++|+++.. |... + ..+.+++++||. ++..+++.... +.-++.+..+
T Consensus 138 q~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v-l~~G~i~~~g 216 (362)
T 2it1_A 138 QQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAV-IREGEILQVG 216 (362)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE-EETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE-EECCEEEEEc
Confidence 9999999999877 2110 2 237899999995 45566665544 5567777777
Q ss_pred cceeeccCCCC
Q 021147 273 PAKQIFDIPES 283 (317)
Q Consensus 273 p~ilIlDEPts 283 (317)
++.-++.+|.+
T Consensus 217 ~~~~~~~~p~~ 227 (362)
T 2it1_A 217 TPDEVYYKPKY 227 (362)
T ss_dssp CHHHHHHSCSB
T ss_pred CHHHHHhCccc
Confidence 77777777766
No 255
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.05 E-value=0.00027 Score=61.04 Aligned_cols=22 Identities=32% Similarity=0.812 Sum_probs=19.5
Q ss_pred EEEEcCCCChHHHHHHHHhhcc
Q 021147 106 LLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+.|+||||||||||++.|..-+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999887654
No 256
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.04 E-value=0.00031 Score=58.50 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.2
Q ss_pred CEEEEEcCCCChHHHHHHHHhh
Q 021147 104 TSLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~G 125 (317)
.++.|+|++||||||+++.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999987
No 257
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.03 E-value=0.00033 Score=60.14 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=24.8
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++|.+++|+|++||||||+.+.|...+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999987653
No 258
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.03 E-value=0.00034 Score=66.58 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
.+..++|+|+||||||||++.|.+.+. +..+.|.+-+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-----~~~~~~~~~D~ 71 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-----MQGSRVIIIDP 71 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEEES
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-----HCCCEEEEEeC
Confidence 567899999999999999999999887 66777776543
No 259
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.03 E-value=0.00034 Score=64.23 Aligned_cols=35 Identities=31% Similarity=0.405 Sum_probs=27.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g 143 (317)
.+..+.|+|||||||||+++.|..-++ .|.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~-------~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ-------GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT-------TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-------CCeEEEec
Confidence 356799999999999999999987553 24456654
No 260
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.01 E-value=0.00015 Score=69.41 Aligned_cols=120 Identities=16% Similarity=0.256 Sum_probs=80.1
Q ss_pred CceeeEecccCCCCcccccceee-----ccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVI-----RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 220 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~-----~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~ 220 (317)
+.++|+||++.+|+++++.++.. ...+....++++.++++.+++-. +.+.++...|++
T Consensus 81 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------------~~~r~~~~LSGG 143 (372)
T 1g29_1 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE-----------------LLNRKPRELSGG 143 (372)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGG-----------------GTTCCGGGSCHH
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-----------------HhcCCcccCCHH
Confidence 57899999999999888877531 23344445555666666665411 123455678899
Q ss_pred HHHHHHHHHHcCC-Cccc-----------------------C--CCCCCEEEEecc--chhcCcHHHHHhhcccceeccc
Q 021147 221 KQYNQIVATTFNC-PYLS-----------------------F--RDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 221 ~~~~~~~a~~~~l-~~~~-----------------------l--~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~~ 272 (317)
++|++++|+++.. |... + ..+.+++++||. ++..+++.... +.-++.+..+
T Consensus 144 q~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v-l~~G~i~~~g 222 (372)
T 1g29_1 144 QRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAV-MNRGVLQQVG 222 (372)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE-EETTEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEE-EeCCEEEEeC
Confidence 9999999998766 2110 2 237899999995 55566665544 5567777777
Q ss_pred cceeeccCCCC
Q 021147 273 PAKQIFDIPES 283 (317)
Q Consensus 273 p~ilIlDEPts 283 (317)
++--+++.|.+
T Consensus 223 ~~~~l~~~p~~ 233 (372)
T 1g29_1 223 SPDEVYDKPAN 233 (372)
T ss_dssp CHHHHHHSCSB
T ss_pred CHHHHHhCccc
Confidence 77777777766
No 261
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.00 E-value=0.00034 Score=59.77 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+|.+++|.|++||||||+++.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998776
No 262
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.99 E-value=0.00037 Score=59.82 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=25.0
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|.+++|+|++||||||+++.|...+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999997653
No 263
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.98 E-value=0.00042 Score=61.09 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=22.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++|+|||||++.|.|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 589999999999999999999766
No 264
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.98 E-value=0.00021 Score=67.89 Aligned_cols=120 Identities=16% Similarity=0.207 Sum_probs=80.5
Q ss_pred CceeeEecccCCCCcccccceee-----ccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVI-----RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 220 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~-----~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~ 220 (317)
+.++|+||++.+|+++++.++.. ...+....++++.++++.+++-. +.+.++...|++
T Consensus 87 r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-----------------~~~r~~~~LSGG 149 (355)
T 1z47_A 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLES-----------------YANRFPHELSGG 149 (355)
T ss_dssp SSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGG-----------------GTTSCGGGSCHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------------HhcCCcccCCHH
Confidence 56899999999999888877531 23344455556666666666411 123455678999
Q ss_pred HHHHHHHHHHcCC-Cccc-----------------------C--CCCCCEEEEecc--chhcCcHHHHHhhcccceeccc
Q 021147 221 KQYNQIVATTFNC-PYLS-----------------------F--RDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 221 ~~~~~~~a~~~~l-~~~~-----------------------l--~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~~ 272 (317)
++|++++|+++.. |... + ..+.+++++||. ++..+++.... +.-++.+..+
T Consensus 150 q~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v-l~~G~i~~~g 228 (355)
T 1z47_A 150 QQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLV-LHEGNVEQFG 228 (355)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEE-EETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEE-EECCEEEEEc
Confidence 9999999999877 2110 2 237899999995 45566665444 5556777666
Q ss_pred cceeeccCCCC
Q 021147 273 PAKQIFDIPES 283 (317)
Q Consensus 273 p~ilIlDEPts 283 (317)
++--++++|.+
T Consensus 229 ~~~~l~~~p~~ 239 (355)
T 1z47_A 229 TPEEVYEKPGT 239 (355)
T ss_dssp CHHHHHHSCSS
T ss_pred CHHHHHhCccc
Confidence 76667777766
No 265
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.96 E-value=0.00097 Score=56.24 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=26.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc----EEEECcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA----QVTYNSS 144 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G----~I~i~g~ 144 (317)
.++|+|++|||||||++.+.+-.-+....|+.+ .+.++|.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ 65 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence 488999999999999965544321111236666 5666654
No 266
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.96 E-value=0.00037 Score=59.52 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++|.|++||||||+.+.|+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999998654
No 267
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.96 E-value=0.00017 Score=61.31 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=25.9
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++.+.+++|+|++||||||+.+.|+..+.
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 455678999999999999999999987654
No 268
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.93 E-value=0.0004 Score=58.36 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++|.|++||||||+++.|...+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998765
No 269
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.92 E-value=0.00043 Score=58.23 Aligned_cols=26 Identities=23% Similarity=0.509 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+.+++|+|++||||||+.+.|+..+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999976543
No 270
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.91 E-value=0.00015 Score=68.92 Aligned_cols=120 Identities=17% Similarity=0.208 Sum_probs=79.2
Q ss_pred CceeeEecccCCCCcccccceeec-----cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVIR-----RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 220 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~~-----~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~ 220 (317)
+.++|+||++.+|+++++.++... ..+....++++.++++.+++-. +.+.++...|++
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------------~~~r~~~~LSgG 137 (359)
T 2yyz_A 75 REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDN-----------------LLDRKPTQLSGG 137 (359)
T ss_dssp TTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGG-----------------GTTSCGGGSCHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------------HhcCChhhCCHH
Confidence 568999999999998888775321 1222333345555666665411 123455678999
Q ss_pred HHHHHHHHHHcCC-Cccc-----------------------C--CCCCCEEEEecc--chhcCcHHHHHhhcccceeccc
Q 021147 221 KQYNQIVATTFNC-PYLS-----------------------F--RDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 221 ~~~~~~~a~~~~l-~~~~-----------------------l--~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~~ 272 (317)
++|++++|+++.. |... + ..+.+++++||. ++..+++.... +.-++.+..+
T Consensus 138 q~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~v-l~~G~i~~~g 216 (359)
T 2yyz_A 138 QQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAV-FNQGKLVQYG 216 (359)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEE-EETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE-EECCEEEEeC
Confidence 9999999999877 2110 2 237899999995 45566665544 5667777777
Q ss_pred cceeeccCCCC
Q 021147 273 PAKQIFDIPES 283 (317)
Q Consensus 273 p~ilIlDEPts 283 (317)
++..++++|.+
T Consensus 217 ~~~~l~~~p~~ 227 (359)
T 2yyz_A 217 TPDEVYDSPKN 227 (359)
T ss_dssp CHHHHHHSCSB
T ss_pred CHHHHHhCccc
Confidence 77777777776
No 271
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.90 E-value=0.00089 Score=62.52 Aligned_cols=32 Identities=28% Similarity=0.301 Sum_probs=29.0
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhh
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~G 125 (317)
++...+.+ .|.-++|+|+||+|||||+..|.+
T Consensus 135 ~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 135 LHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 77777888 789999999999999999999887
No 272
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.88 E-value=0.00037 Score=58.36 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=19.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++.++.|+|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567899999999999999999986654
No 273
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.87 E-value=0.00019 Score=68.58 Aligned_cols=120 Identities=18% Similarity=0.270 Sum_probs=74.9
Q ss_pred CceeeEecccCCCCcccccceee-----ccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVI-----RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 220 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~-----~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~ 220 (317)
+.++|+||++.+|+++++.++.. ...+....++++.++++.+++-. +.+.++...|++
T Consensus 83 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------------~~~r~~~~LSGG 145 (372)
T 1v43_A 83 RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE-----------------LLNRYPAQLSGG 145 (372)
T ss_dssp GTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG-----------------GTTSCTTTCCSS
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------------HhcCChhhCCHH
Confidence 46899999999999888877532 22344455556666666666411 124566778899
Q ss_pred HHHHHHHHHHcCC-Cccc-----------------------C--CCCCCEEEEecc--chhcCcHHHHHhhcccceeccc
Q 021147 221 KQYNQIVATTFNC-PYLS-----------------------F--RDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 221 ~~~~~~~a~~~~l-~~~~-----------------------l--~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~~ 272 (317)
++|++++|+++.. |... + ..+.+++++||. ++..+++.... +.-++.+..+
T Consensus 146 q~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v-l~~G~i~~~g 224 (372)
T 1v43_A 146 QRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAV-MNRGQLLQIG 224 (372)
T ss_dssp CHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE-EETTEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE-EECCEEEEeC
Confidence 9999999998877 2110 1 237899999995 45566665544 5567777767
Q ss_pred cceeeccCCCC
Q 021147 273 PAKQIFDIPES 283 (317)
Q Consensus 273 p~ilIlDEPts 283 (317)
++.-++..|.+
T Consensus 225 ~~~~l~~~p~~ 235 (372)
T 1v43_A 225 SPTEVYLRPNS 235 (372)
T ss_dssp CHHHHHHCCSB
T ss_pred CHHHHHhCccc
Confidence 77677777766
No 274
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.86 E-value=0.00057 Score=58.17 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.8
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+++|+|+||||||||+..|...+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4799999999999999999998876
No 275
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.84 E-value=0.00056 Score=57.85 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++|.|++||||||+++.|.-.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998774
No 276
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.82 E-value=0.0036 Score=60.76 Aligned_cols=36 Identities=8% Similarity=0.026 Sum_probs=31.2
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|+.+.--+++|+++.|.|++|+|||||+.-++.-..
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 666665699999999999999999999988887665
No 277
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.82 E-value=0.00063 Score=61.90 Aligned_cols=31 Identities=26% Similarity=0.558 Sum_probs=26.6
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEE
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 139 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I 139 (317)
..+.|+||+|+|||||+++|++.+. +..+.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~-----~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF-----DTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH-----SCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc-----CCCcce
Confidence 5799999999999999999999987 555543
No 278
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.81 E-value=0.00071 Score=58.83 Aligned_cols=27 Identities=30% Similarity=0.679 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+|-+++|+|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 567899999999999999999987654
No 279
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.79 E-value=0.00093 Score=63.60 Aligned_cols=42 Identities=19% Similarity=0.150 Sum_probs=31.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc------CCCCCCcCcEEEECcc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE------NDKFASERAQVTYNSS 144 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~------p~~~~p~~G~I~i~g~ 144 (317)
|-.++|||.+|+|||||++.|.+--. .....|..|.+.+.+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~ 49 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDP 49 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCc
Confidence 34689999999999999999998321 1123477888888763
No 280
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.78 E-value=0.00074 Score=56.03 Aligned_cols=25 Identities=44% Similarity=0.635 Sum_probs=22.5
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++++|+|+.||||||+.+.|+..+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999987654
No 281
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.77 E-value=0.00037 Score=68.72 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=29.0
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++++++.+++| +.|+||+|+|||||+++|++...
T Consensus 41 ~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 41 FNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp HHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred HhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence 55667777777 88999999999999999999764
No 282
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.76 E-value=0.00063 Score=61.40 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++|||||||++.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999999854
No 283
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.76 E-value=0.00071 Score=59.20 Aligned_cols=28 Identities=32% Similarity=0.637 Sum_probs=22.9
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++.+++|+|++||||||+++.|+..+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4567899999999999999999986543
No 284
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.75 E-value=0.00065 Score=57.15 Aligned_cols=25 Identities=36% Similarity=0.624 Sum_probs=21.9
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+++|+|++||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999987654
No 285
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.74 E-value=0.00066 Score=56.25 Aligned_cols=25 Identities=12% Similarity=0.569 Sum_probs=21.9
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+++|+|++||||||+.+.|...+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999987654
No 286
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.74 E-value=0.00073 Score=58.34 Aligned_cols=24 Identities=29% Similarity=0.645 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++||||||+++.|+.-+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999976553
No 287
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.73 E-value=0.0012 Score=53.56 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++|||||||++.+.+-..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~~ 30 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGIF 30 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 478999999999999999987543
No 288
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.72 E-value=0.00092 Score=57.20 Aligned_cols=26 Identities=27% Similarity=0.617 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+-+++|+|++||||||+.+.|+..+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999987654
No 289
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.71 E-value=0.00097 Score=55.91 Aligned_cols=22 Identities=27% Similarity=0.647 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|+|||||++.+.+-
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999876
No 290
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.71 E-value=0.00081 Score=56.58 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++|.|++||||||+.+.|...+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999988663
No 291
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.70 E-value=0.00074 Score=58.82 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+.++.|+|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 446799999999999999999987654
No 292
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.70 E-value=0.00087 Score=55.32 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++|+|++||||||+.+.|...+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987543
No 293
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.68 E-value=0.00064 Score=59.95 Aligned_cols=28 Identities=18% Similarity=0.404 Sum_probs=23.6
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.+..|+.++++||+||||||++.++..-
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhc
Confidence 4567999999999999999998876543
No 294
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.66 E-value=0.0014 Score=53.24 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++|||||||++.+.+-..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~ 31 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDSF 31 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 478999999999999999988753
No 295
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.66 E-value=0.00089 Score=57.87 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++||||||+++.|+.-+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999976543
No 296
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.66 E-value=0.00085 Score=56.29 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+++|+|++||||||+.+.|+..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999987543
No 297
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.00096 Score=56.01 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++|||||||++.+.+-..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999998753
No 298
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.66 E-value=0.00094 Score=57.08 Aligned_cols=26 Identities=19% Similarity=0.553 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+++|+|++||||||+.+.|+..+.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999986543
No 299
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.65 E-value=0.0015 Score=53.10 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++++|++|||||||++.+.+-..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~ 28 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSNDF 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 378999999999999999887643
No 300
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.65 E-value=0.0017 Score=52.61 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 301
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.64 E-value=0.0018 Score=52.32 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++++|++|||||||++.+.+-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998754
No 302
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.62 E-value=0.00096 Score=59.51 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.8
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
-+++|.|++||||||+.+.|...+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3799999999999999999987543
No 303
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.61 E-value=0.0017 Score=52.95 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48899999999999999998664
No 304
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.60 E-value=0.0022 Score=51.68 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999887643
No 305
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.59 E-value=0.0011 Score=57.36 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=21.6
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
-+++|+|.+||||||+.+.|...+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999998764
No 306
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.59 E-value=0.0015 Score=53.73 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999887754
No 307
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.58 E-value=0.0024 Score=51.87 Aligned_cols=22 Identities=45% Similarity=0.573 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|||||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999874
No 308
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.58 E-value=0.0011 Score=53.44 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++++|++|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999998764
No 309
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.58 E-value=0.0012 Score=53.28 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++++|++|||||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998764
No 310
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.58 E-value=0.0014 Score=56.75 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999998876
No 311
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.57 E-value=0.0012 Score=54.10 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 48999999999999999998764
No 312
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.57 E-value=0.00099 Score=54.22 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++|+|||||++.+.|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 478999999999999999987653
No 313
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.56 E-value=0.0027 Score=54.53 Aligned_cols=23 Identities=39% Similarity=0.726 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999887654
No 314
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.55 E-value=0.00059 Score=62.76 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=20.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++-+++|.|++||||||+.+.|...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999988654
No 315
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.55 E-value=0.0017 Score=55.30 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.9
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+.|.||+|+|||||++.|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999876
No 316
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.55 E-value=0.0016 Score=53.63 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+.-.++|+|++|||||||++.+.+-.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34578999999999999999998743
No 317
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.54 E-value=0.0012 Score=59.30 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
++.++.|+|++||||||+++.|...+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998764
No 318
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.53 E-value=0.0017 Score=53.42 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998654
No 319
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.52 E-value=0.0012 Score=61.23 Aligned_cols=28 Identities=21% Similarity=0.484 Sum_probs=25.3
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4467899999999999999999999886
No 320
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.51 E-value=0.0014 Score=53.52 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++|||||||++.+.+...
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~~ 27 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQG 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 378999999999999999986543
No 321
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.50 E-value=0.0013 Score=58.49 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++-+++|.|++||||||+.+.|+--+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999986543
No 322
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.50 E-value=0.0012 Score=53.73 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998754
No 323
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.50 E-value=0.0013 Score=59.92 Aligned_cols=23 Identities=43% Similarity=0.523 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 324
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.49 E-value=0.0015 Score=59.19 Aligned_cols=27 Identities=33% Similarity=0.610 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++..+.|.||+|||||||++++++...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 456789999999999999999998765
No 325
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.49 E-value=0.0013 Score=58.61 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|.+|+|||||++.|.|--.
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 589999999999999999998643
No 326
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.48 E-value=0.0021 Score=60.37 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=26.0
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl 126 (317)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999988875
No 327
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.47 E-value=0.0022 Score=53.25 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 328
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.47 E-value=0.0014 Score=53.96 Aligned_cols=23 Identities=48% Similarity=0.673 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998754
No 329
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.47 E-value=0.0023 Score=53.41 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|+.|||||||++.+.+-..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~~ 32 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDTF 32 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 489999999999999999988743
No 330
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.46 E-value=0.0014 Score=53.84 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999988763
No 331
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.46 E-value=0.0013 Score=54.85 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998864
No 332
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.46 E-value=0.0013 Score=55.16 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.0
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
-.++|+|++|||||||++.+.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998763
No 333
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.46 E-value=0.0025 Score=59.20 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=26.2
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
-+++|+++.|.|++|||||||+..++.-.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 58999999999999999999998887653
No 334
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.45 E-value=0.0028 Score=52.54 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48899999999999999998754
No 335
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.43 E-value=0.0014 Score=59.84 Aligned_cols=22 Identities=45% Similarity=0.579 Sum_probs=20.3
Q ss_pred CEEEEEcCCCChHHHHHHHHhh
Q 021147 104 TSLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~G 125 (317)
-+++|+|++||||||+++.|..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
No 336
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.41 E-value=0.0017 Score=52.65 Aligned_cols=22 Identities=50% Similarity=0.631 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|||||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998864
No 337
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.39 E-value=0.0018 Score=54.01 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++|+|||||++.+.|-+.
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 478999999999999999998765
No 338
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.39 E-value=0.0041 Score=52.80 Aligned_cols=23 Identities=52% Similarity=0.663 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 339
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.38 E-value=0.001 Score=62.89 Aligned_cols=117 Identities=17% Similarity=0.243 Sum_probs=76.4
Q ss_pred CceeeEecccCCCCcccccceeec-----cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVIR-----RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 220 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~~-----~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~ 220 (317)
+.++|+||++.+|+++++.++..- ..+.. +++.++++.+++-. +.+.++...|++
T Consensus 72 r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~-----------------~~~~~~~~LSgG 131 (348)
T 3d31_A 72 HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEH-----------------LLDRNPLTLSGG 131 (348)
T ss_dssp HTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTT-----------------TTTSCGGGSCHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCch-----------------HhcCChhhCCHH
Confidence 468999999999998888775311 11111 33444555555311 123455678999
Q ss_pred HHHHHHHHHHcCC-Cccc-----------------------C--CCCCCEEEEecc--chhcCcHHHHHhhcccceeccc
Q 021147 221 KQYNQIVATTFNC-PYLS-----------------------F--RDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 221 ~~~~~~~a~~~~l-~~~~-----------------------l--~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~~ 272 (317)
++|++++|+++.. |... + ..+.+++++||. ++..+++.... +.-++.+..+
T Consensus 132 q~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~v-l~~G~i~~~g 210 (348)
T 3d31_A 132 EQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAV-VMDGKLIQVG 210 (348)
T ss_dssp HHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEE-ESSSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE-EECCEEEEEC
Confidence 9999999999877 2110 2 247899999995 45566665544 5667777777
Q ss_pred cceeeccCCCC
Q 021147 273 PAKQIFDIPES 283 (317)
Q Consensus 273 p~ilIlDEPts 283 (317)
++-.++++|.+
T Consensus 211 ~~~~~~~~p~~ 221 (348)
T 3d31_A 211 KPEEIFEKPVE 221 (348)
T ss_dssp CHHHHHSSCCT
T ss_pred CHHHHHhCccc
Confidence 77777777766
No 340
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.37 E-value=0.0035 Score=51.68 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48999999999999999998754
No 341
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.37 E-value=0.0031 Score=53.19 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998654
No 342
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.37 E-value=0.0019 Score=52.66 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|||||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 343
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.37 E-value=0.0018 Score=56.72 Aligned_cols=24 Identities=33% Similarity=0.709 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++|+|++||||||+++.|+-.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999986543
No 344
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.36 E-value=0.0018 Score=56.33 Aligned_cols=27 Identities=41% Similarity=0.634 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+|-.++|+|+.||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356789999999999999999987654
No 345
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.36 E-value=0.0019 Score=54.30 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 346
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.36 E-value=0.0026 Score=52.09 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
No 347
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.36 E-value=0.0016 Score=54.19 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998764
No 348
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.35 E-value=0.0018 Score=55.07 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.|..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998754
No 349
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.35 E-value=0.0022 Score=52.93 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+..+.|.||+|+|||||++.++..+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 446789999999999999999988764
No 350
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.35 E-value=0.0021 Score=52.89 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 48899999999999999988653
No 351
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.34 E-value=0.0034 Score=52.42 Aligned_cols=33 Identities=15% Similarity=0.341 Sum_probs=23.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G 137 (317)
.++|+|++|+|||||++.+.+-..+....|+.|
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~ 41 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF 41 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccc
Confidence 478999999999999999987543222235544
No 352
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.34 E-value=0.0016 Score=58.91 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999987653
No 353
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.33 E-value=0.002 Score=52.18 Aligned_cols=22 Identities=18% Similarity=0.533 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|+|||||++.+.+-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999998764
No 354
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.31 E-value=0.0021 Score=52.97 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999988754
No 355
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.30 E-value=0.0019 Score=55.75 Aligned_cols=25 Identities=28% Similarity=0.593 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999998865
No 356
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.30 E-value=0.0041 Score=51.48 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999988654
No 357
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.30 E-value=0.0013 Score=54.47 Aligned_cols=23 Identities=26% Similarity=0.651 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHhh
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~G 125 (317)
.-.++|+|++|||||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999874
No 358
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.29 E-value=0.0022 Score=52.60 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998764
No 359
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.29 E-value=0.0022 Score=53.66 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++++|++|||||||++.+.+-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48899999999999999998754
No 360
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.28 E-value=0.0019 Score=55.84 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++||||||+++.|+-.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987543
No 361
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.27 E-value=0.0021 Score=59.33 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|.+|+|||||++.|.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999986
No 362
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.26 E-value=0.0023 Score=52.70 Aligned_cols=24 Identities=50% Similarity=0.580 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++|||||||++.+.+-..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~~ 37 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQF 37 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 489999999999999999987643
No 363
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.25 E-value=0.0038 Score=52.23 Aligned_cols=24 Identities=46% Similarity=0.585 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++|||||||++.+.+-..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~~ 41 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDTY 41 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 489999999999999999987543
No 364
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.25 E-value=0.002 Score=57.92 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|.+|||||||++.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 365
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.25 E-value=0.0017 Score=63.76 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=30.5
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++.+ +.+-+|+..+|+|+||+|||||++.|..-..
T Consensus 142 ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 142 VDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 4444 6788999999999999999999999988765
No 366
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.24 E-value=0.0034 Score=52.20 Aligned_cols=34 Identities=18% Similarity=0.363 Sum_probs=25.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G 137 (317)
.-.++|+|++|||||||++.+.+-. .....|+.|
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~ 51 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG 51 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc
Confidence 3468999999999999999998754 232335555
No 367
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.24 E-value=0.0022 Score=58.26 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.1
Q ss_pred CEEEEEcCCCChHHHHHHHHhh
Q 021147 104 TSLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~G 125 (317)
.++.|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 368
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.23 E-value=0.004 Score=52.22 Aligned_cols=23 Identities=43% Similarity=0.560 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 58999999999999999998743
No 369
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.23 E-value=0.0031 Score=52.26 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++|||||||++.+.+-..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~~ 35 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKKF 35 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 489999999999999999887543
No 370
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.23 E-value=0.0022 Score=60.50 Aligned_cols=25 Identities=32% Similarity=0.652 Sum_probs=22.3
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999988764
No 371
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.23 E-value=0.0043 Score=51.24 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|+|||||++.+.+-
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999999998843
No 372
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.23 E-value=0.0026 Score=57.18 Aligned_cols=29 Identities=28% Similarity=0.564 Sum_probs=25.0
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+.++..+.|.||+|+|||||++.++..+.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 34556799999999999999999998865
No 373
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.23 E-value=0.0014 Score=56.32 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.7
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
-.++|+|++|||||||++.|.|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999864
No 374
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.22 E-value=0.0022 Score=59.02 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+..+.|.||+|+|||||++.|++.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 35688999999999999999999875
No 375
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.22 E-value=0.0028 Score=55.71 Aligned_cols=27 Identities=33% Similarity=0.636 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+..+.|+|+.||||||+.+.|+..+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999987654
No 376
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.21 E-value=0.0037 Score=52.60 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 377
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.21 E-value=0.0023 Score=59.06 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+++|+|.+|||||||++.|.|--
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 69999999999999999999863
No 378
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.21 E-value=0.0021 Score=61.23 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|||++|||||||+++|.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999974
No 379
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.21 E-value=0.0025 Score=54.70 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998865
No 380
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.20 E-value=0.0038 Score=52.24 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998764
No 381
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.20 E-value=0.0042 Score=52.51 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998764
No 382
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.18 E-value=0.0049 Score=51.78 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=24.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G 137 (317)
.++|+|++|+|||||++.+.+-..+....|+.|
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~ 57 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVF 57 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCccCCeee
Confidence 489999999999999999987643222234444
No 383
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.18 E-value=0.0045 Score=51.09 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999988754
No 384
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.18 E-value=0.0024 Score=60.09 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
..-.++|+|++|+|||||++.|+|..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999999875
No 385
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.18 E-value=0.0026 Score=59.95 Aligned_cols=27 Identities=37% Similarity=0.596 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++.+++|+||+|||||||...|+.-+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999998765
No 386
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.18 E-value=0.0024 Score=56.82 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.|.|--
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 387
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.17 E-value=0.0045 Score=52.47 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=24.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G 137 (317)
.++|+|++|+|||||++.+.+-.......|+.|
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~ 58 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVE 58 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCCCCCCccc
Confidence 589999999999999999988654222224444
No 388
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.16 E-value=0.0027 Score=61.23 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=24.8
Q ss_pred eEecCCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 98 l~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+.-.+..++.|+|++||||||+++.|+.-+
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 334557899999999999999999987654
No 389
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.14 E-value=0.0026 Score=54.77 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=21.5
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
-.++|+|++|||||||++.|.+-..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999998887643
No 390
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.14 E-value=0.0011 Score=69.47 Aligned_cols=33 Identities=24% Similarity=0.531 Sum_probs=30.4
Q ss_pred eeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 96 isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++.+.+++.+.|+||+|||||||+++|++...
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 467888999999999999999999999999986
No 391
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.13 E-value=0.0028 Score=55.59 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=25.0
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+|.+++|.|++||||||+++.|.-.+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999988776
No 392
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.13 E-value=0.0043 Score=51.73 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 393
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.12 E-value=0.003 Score=52.88 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999987643
No 394
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.12 E-value=0.0024 Score=56.81 Aligned_cols=29 Identities=14% Similarity=0.334 Sum_probs=22.7
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+|.+++|.|++||||||+++.|.-.+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999988775
No 395
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.10 E-value=0.0027 Score=52.37 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+..+.|.||+|+|||||++.++..+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 345688999999999999999998875
No 396
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.10 E-value=0.0035 Score=54.87 Aligned_cols=34 Identities=24% Similarity=0.211 Sum_probs=27.0
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
++..-+.+ .|..++|+||||||||||+..|+...
T Consensus 25 lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 25 MHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 55555555 57889999999999999999887643
No 397
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.10 E-value=0.0031 Score=53.54 Aligned_cols=22 Identities=45% Similarity=0.727 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 398
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.09 E-value=0.0034 Score=55.39 Aligned_cols=26 Identities=31% Similarity=0.588 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..-+.|.||+|+|||||++.++..+.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34588999999999999999998765
No 399
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.09 E-value=0.0028 Score=57.45 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|.+|||||||++.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 400
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.09 E-value=0.0052 Score=52.77 Aligned_cols=33 Identities=15% Similarity=0.341 Sum_probs=24.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G 137 (317)
.++|+|++|+|||||++.+.+-..+....|+.|
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~ 62 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF 62 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCccc
Confidence 489999999999999999988643222235544
No 401
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.08 E-value=0.0038 Score=51.45 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=20.7
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
=.++|+|++|+|||||++.+.+-.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999988653
No 402
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.07 E-value=0.0048 Score=51.75 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
No 403
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.07 E-value=0.0031 Score=56.71 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|.+|||||||++.|.|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999854
No 404
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.07 E-value=0.0032 Score=53.21 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998764
No 405
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.05 E-value=0.0033 Score=52.78 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999998754
No 406
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.05 E-value=0.0031 Score=52.93 Aligned_cols=33 Identities=15% Similarity=0.408 Sum_probs=23.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCC-CCCCcCc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFEND-KFASERA 137 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~-~~~p~~G 137 (317)
.++|+|++|||||||++.+.+-.... ...|+.|
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~ 52 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG 52 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC----CCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcccccccccc
Confidence 58999999999999999998754322 2235555
No 407
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.05 E-value=0.0027 Score=53.53 Aligned_cols=23 Identities=35% Similarity=0.717 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998754
No 408
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.05 E-value=0.0032 Score=54.80 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
No 409
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.05 E-value=0.006 Score=51.40 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999988753
No 410
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.04 E-value=0.0019 Score=58.51 Aligned_cols=124 Identities=19% Similarity=0.151 Sum_probs=74.1
Q ss_pred ceeeEecccCCCCcccccceee------ccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHh-hhccCCCChH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVI------RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAV-LKSMEGDSDV 219 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~------~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~-~~~~~~~~~~ 219 (317)
.++|+||++.+++.+++.++.. ...+....++++.++++.+|+-. + .+..+...|+
T Consensus 94 ~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------------~~~~~~~~~LSg 156 (262)
T 1b0u_A 94 RLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDE-----------------RAQGKYPVHLSG 156 (262)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCH-----------------HHHTSCGGGSCH
T ss_pred ceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCc-----------------hhhcCCcccCCH
Confidence 5789999988888777666321 12233334455556666665411 1 2334556788
Q ss_pred HHHHHHHHHHHcCC-Cccc------------------------CCCCCCEEEEecc--chhcCcHHHHHhhcccceeccc
Q 021147 220 EKQYNQIVATTFNC-PYLS------------------------FRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 220 ~~~~~~~~a~~~~l-~~~~------------------------l~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~~ 272 (317)
+++|+.++|+++.. |... ...+.+++++||. .+..+++.... +.-++.+..+
T Consensus 157 Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~-l~~G~i~~~g 235 (262)
T 1b0u_A 157 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIF-LHQGKIEEEG 235 (262)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEE-EETTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE-EECCEEEEeC
Confidence 99999998888766 2110 2347899999995 33445544332 4456666666
Q ss_pred cceeeccCCCCCCHHHHH
Q 021147 273 PAKQIFDIPESSDPENEL 290 (317)
Q Consensus 273 p~ilIlDEPtsLD~~t~~ 290 (317)
+.-.++++|.. +..+.
T Consensus 236 ~~~~~~~~~~~--~~~~~ 251 (262)
T 1b0u_A 236 DPEQVFGNPQS--PRLQQ 251 (262)
T ss_dssp CHHHHHHSCCS--HHHHH
T ss_pred CHHHHHhCcch--HHHHH
Confidence 65556666665 44443
No 411
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.04 E-value=0.0031 Score=52.95 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48899999999999999998764
No 412
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.04 E-value=0.0026 Score=53.35 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998875
No 413
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.03 E-value=0.0025 Score=54.43 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=27.3
Q ss_pred ceeeeeEecCCC---EEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTT---SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge---~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++.+.-.+..|. .+.|.||+|+|||||++.++..+.
T Consensus 32 ~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 32 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 333433444444 789999999999999999988775
No 414
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.03 E-value=0.0032 Score=56.28 Aligned_cols=28 Identities=18% Similarity=0.421 Sum_probs=25.1
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+|.+++|.|++||||||+++.|...+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999988876
No 415
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.02 E-value=0.0011 Score=59.28 Aligned_cols=23 Identities=35% Similarity=0.687 Sum_probs=20.8
Q ss_pred EEEEcCCCChHHHHHHHHhhccc
Q 021147 106 LLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+.|.||+|+|||||+++|+....
T Consensus 47 vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 67999999999999999998754
No 416
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.01 E-value=0.0033 Score=58.86 Aligned_cols=25 Identities=24% Similarity=0.634 Sum_probs=22.3
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..++|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3789999999999999999998764
No 417
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.01 E-value=0.0034 Score=52.47 Aligned_cols=23 Identities=17% Similarity=0.489 Sum_probs=20.2
Q ss_pred CEEEEEcCCCChHHHHHHHHhhc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl 126 (317)
-.++|+|++|||||||++.+.+-
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999998853
No 418
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.00 E-value=0.007 Score=50.79 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 48999999999999998877643
No 419
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.00 E-value=0.0034 Score=58.64 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+.+++|+||||||||||...|+--+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45789999999999999999987654
No 420
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.98 E-value=0.0037 Score=53.07 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998654
No 421
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.97 E-value=0.0031 Score=53.61 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999988653
No 422
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.97 E-value=0.0032 Score=55.61 Aligned_cols=33 Identities=24% Similarity=0.559 Sum_probs=26.7
Q ss_pred eeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 96 isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+-++++..++.|+||.||||||..+.|+--|.
T Consensus 22 ~~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 22 TDQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp --CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cchhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 344566778899999999999999999987765
No 423
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.97 E-value=0.003 Score=52.04 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988864
No 424
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.97 E-value=0.0038 Score=52.86 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.0
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
=.++|+|++|||||||++.+.+-.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 368999999999999999998754
No 425
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.97 E-value=0.0034 Score=57.32 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|+.|||||||++.|.|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999874
No 426
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.95 E-value=0.0041 Score=54.60 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+|.+++|-|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999998876
No 427
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.94 E-value=0.0032 Score=52.40 Aligned_cols=22 Identities=18% Similarity=0.516 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999864
No 428
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.93 E-value=0.0038 Score=53.29 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 429
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.91 E-value=0.0038 Score=55.03 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|.+++|.|..||||||+++.|...+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999997764
No 430
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.90 E-value=0.0042 Score=53.05 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999888654
No 431
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.90 E-value=0.0059 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999998754
No 432
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.89 E-value=0.0043 Score=53.10 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 433
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.86 E-value=0.0046 Score=54.46 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=26.0
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++|.+++|-|++||||||+++.|.-.+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999999999887
No 434
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.85 E-value=0.0048 Score=50.14 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=23.9
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+.-+.|.||+|+|||++++.|.....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 3456688999999999999999998764
No 435
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.84 E-value=0.0046 Score=54.81 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=25.4
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+|.+++|.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999988776
No 436
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.84 E-value=0.0042 Score=55.90 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++++|++|+|||||++.|.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 437
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.84 E-value=0.0046 Score=52.15 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=19.8
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
=.++|+|++|+|||||++.+.+-.
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC--
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999888653
No 438
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.83 E-value=0.0043 Score=52.46 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++|+|||||++.+.+-+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 588999999999999999988654
No 439
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.82 E-value=0.0044 Score=53.35 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 440
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.82 E-value=0.0044 Score=55.56 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|.+|+|||||++.|.|--
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
No 441
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.81 E-value=0.0069 Score=50.77 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999988653
No 442
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.81 E-value=0.0061 Score=52.21 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=24.3
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhh
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~G 125 (317)
++..-+. -.|.-+.|.|+||+|||||+..|..
T Consensus 7 lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 7 WHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3333333 4578899999999999999987754
No 443
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.81 E-value=0.0032 Score=56.37 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=24.5
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+++.+++|.|+.||||||+++.|...+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35678999999999999999999988764
No 444
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.81 E-value=0.0022 Score=62.32 Aligned_cols=31 Identities=23% Similarity=0.570 Sum_probs=26.0
Q ss_pred eEecCC--CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 98 YDVPKT--TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 98 l~I~~G--e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|.+.++ .+++|+|++||||||++..|++.+.
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444434 5899999999999999999999876
No 445
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.80 E-value=0.003 Score=52.33 Aligned_cols=23 Identities=43% Similarity=0.631 Sum_probs=9.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999887653
No 446
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.78 E-value=0.0041 Score=56.13 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|.+|||||||++.|.|--
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
No 447
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.78 E-value=0.0046 Score=53.33 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|.+|||||||++.+..-.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 58899999999999998887654
No 448
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.75 E-value=0.0049 Score=55.76 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=22.8
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
-.++++|.+|+|||||++.|.|-..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5799999999999999999998765
No 449
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.73 E-value=0.0042 Score=60.45 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.7
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
-.++|||.+|||||||++.|.|--
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 379999999999999999999864
No 450
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.72 E-value=0.0046 Score=52.26 Aligned_cols=22 Identities=18% Similarity=0.573 Sum_probs=19.8
Q ss_pred CEEEEEcCCCChHHHHHHHHhh
Q 021147 104 TSLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~G 125 (317)
-.++|+|++|||||||++.+.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999865
No 451
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.72 E-value=0.0065 Score=57.52 Aligned_cols=35 Identities=20% Similarity=0.444 Sum_probs=28.6
Q ss_pred ceeeeeE---ecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYD---VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~---I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|+.+ |. +++|+++.|.|++|||||||+..++.-..
T Consensus 51 LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 51 LDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp HHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5554 33 88999999999999999999987776543
No 452
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.72 E-value=0.0024 Score=58.89 Aligned_cols=36 Identities=25% Similarity=0.468 Sum_probs=28.7
Q ss_pred ceeeeeEecCC--CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKT--TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~G--e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++.+.-.+..| ..+.|.||+|+|||||++.+++.+.
T Consensus 46 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 46 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 55555556666 4489999999999999999998864
No 453
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.69 E-value=0.0053 Score=56.66 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=24.7
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhh
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~G 125 (317)
-+++|+++.|.|++|||||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999987775
No 454
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.68 E-value=0.0071 Score=52.69 Aligned_cols=25 Identities=32% Similarity=0.686 Sum_probs=22.3
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHH
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRI 123 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL 123 (317)
=+++|+++.|.|++|+|||||+--+
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHH
Confidence 3899999999999999999998643
No 455
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.66 E-value=0.0058 Score=56.97 Aligned_cols=26 Identities=31% Similarity=0.694 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+++|+||+|||||||...|+.-+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 35789999999999999999987654
No 456
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.65 E-value=0.0028 Score=54.32 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988643
No 457
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.64 E-value=0.0099 Score=50.67 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|||||||++.+.+-
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999888754
No 458
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.62 E-value=0.0063 Score=53.01 Aligned_cols=22 Identities=45% Similarity=0.727 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|||.+|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 459
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.60 E-value=0.0064 Score=55.13 Aligned_cols=27 Identities=19% Similarity=0.455 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++..+.|.||+|+|||||++.++..+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 345689999999999999999988875
No 460
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.59 E-value=0.0085 Score=51.02 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999888643
No 461
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.57 E-value=0.0054 Score=55.59 Aligned_cols=119 Identities=14% Similarity=0.165 Sum_probs=68.6
Q ss_pred ceeeEecccCCCCcccccceee------ccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVI------RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 220 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~------~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~ 220 (317)
.++|+||++.+++.+++.++.. ...+....++++.++++.+++-. +.+..+...|++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------------~~~~~~~~LSgG 163 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD-----------------KAHAYPDSLSGG 163 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG-----------------GTTSCGGGSCHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-----------------HhcCChhhCCHH
Confidence 5799999988887766665421 12233333445555666665411 112344567889
Q ss_pred HHHHHHHHHHcCC-Cccc-----------------------C-CCCCCEEEEecc--chhcCcHHHHHhhcccceecccc
Q 021147 221 KQYNQIVATTFNC-PYLS-----------------------F-RDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPP 273 (317)
Q Consensus 221 ~~~~~~~a~~~~l-~~~~-----------------------l-~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~~p 273 (317)
++|+.++|+++.. |... + ..+.+++++||. .+..+++.... +.-++.+..++
T Consensus 164 qkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~-l~~G~i~~~g~ 242 (263)
T 2olj_A 164 QAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLF-MDGGYIIEEGK 242 (263)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEE-EETTEEEEEEC
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEE-EECCEEEEECC
Confidence 9999999888876 2110 2 347889999995 33344443322 34455555555
Q ss_pred ceeeccCCCC
Q 021147 274 AKQIFDIPES 283 (317)
Q Consensus 274 ~ilIlDEPts 283 (317)
.-.++.+|..
T Consensus 243 ~~~~~~~~~~ 252 (263)
T 2olj_A 243 PEDLFDRPQH 252 (263)
T ss_dssp HHHHHHSCCS
T ss_pred HHHHHhCccc
Confidence 4445555544
No 462
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.55 E-value=0.0066 Score=51.66 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 48999999999999999887653
No 463
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.54 E-value=0.0044 Score=51.74 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=19.6
Q ss_pred CEEEEEcCCCChHHHHHHHHhh
Q 021147 104 TSLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~G 125 (317)
=.++++|++|||||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999864
No 464
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.53 E-value=0.0066 Score=52.45 Aligned_cols=23 Identities=43% Similarity=0.699 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999988754
No 465
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.52 E-value=0.013 Score=50.41 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999999887653
No 466
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.50 E-value=0.0058 Score=59.28 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+..+.|.||+|+|||||+++|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999874
No 467
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.50 E-value=0.0031 Score=53.22 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=4.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988876
No 468
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.49 E-value=0.0074 Score=52.62 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++.|+||.||||+|..+.|+--|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999998765
No 469
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.44 E-value=0.0073 Score=56.59 Aligned_cols=26 Identities=38% Similarity=0.865 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+..+.|.||+|+||||++++|+..+.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 34588999999999999999998864
No 470
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.40 E-value=0.0092 Score=58.19 Aligned_cols=27 Identities=41% Similarity=0.786 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++.+++++|++||||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999998887
No 471
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.37 E-value=0.008 Score=50.66 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+.|.||.|+|||||++.++..+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 388999999999999999988653
No 472
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.37 E-value=0.0075 Score=58.14 Aligned_cols=25 Identities=28% Similarity=0.582 Sum_probs=21.9
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+++|+||||||||||.+.|+--+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999987654
No 473
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.37 E-value=0.0092 Score=55.34 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+..-+.|.||+|||||||++.++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 44678899999999999999999876
No 474
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.34 E-value=0.013 Score=54.54 Aligned_cols=28 Identities=18% Similarity=0.442 Sum_probs=25.1
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+|..+.|.||+|+|||||++.++..+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467899999999999999999999886
No 475
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.31 E-value=0.0076 Score=55.87 Aligned_cols=28 Identities=29% Similarity=0.519 Sum_probs=24.5
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+..+.|.||+|+|||||++.+.....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4556799999999999999999998774
No 476
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.23 E-value=0.014 Score=49.80 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCChHHHHH-HHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLV-NRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLl-klL~Gl~~ 128 (317)
+|.++.+.|+.||||||++ +++..+..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999997 66655543
No 477
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.20 E-value=0.0098 Score=53.58 Aligned_cols=25 Identities=36% Similarity=0.818 Sum_probs=22.5
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+.|.||+|+|||||++.++..+.
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999999999999999998875
No 478
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.15 E-value=0.0091 Score=59.26 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=25.9
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+.|-++.|+|.|||||||+.++|+..+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999986
No 479
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.10 E-value=0.013 Score=54.95 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.-+++|+|+.|+|||||++.|++.+.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999987764
No 480
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.10 E-value=0.013 Score=54.11 Aligned_cols=27 Identities=37% Similarity=0.630 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+..-+.|.||+|+|||+|++.++....
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 345688999999999999999998764
No 481
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.09 E-value=0.0095 Score=53.29 Aligned_cols=25 Identities=40% Similarity=0.602 Sum_probs=21.9
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+.|.||+|+|||||++.++....
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3578999999999999999998754
No 482
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.07 E-value=0.012 Score=53.66 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=22.0
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+.|.||+|+|||+|++.|+.-+.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4577889999999999999998765
No 483
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.02 E-value=0.0083 Score=58.46 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=28.1
Q ss_pred eeeeeEecCCCE--EEEEcCCCChHHHHHHHHhhccc
Q 021147 94 TLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 94 ~~isl~I~~Ge~--vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+.+.-.|..|.. +.|.||+|+|||||+++|+....
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 344555556654 89999999999999999999876
No 484
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.01 E-value=0.012 Score=53.77 Aligned_cols=25 Identities=40% Similarity=0.538 Sum_probs=22.3
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
-.++++|.+|+|||||++.|.|-..
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEecCCCchHHHHHHHhcCce
Confidence 4689999999999999999998753
No 485
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.01 E-value=0.012 Score=55.80 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl 126 (317)
++..++++|.+|+|||||++.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 5678999999999999999999997
No 486
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.99 E-value=0.013 Score=51.00 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|.+++|=|.-||||||++++|.-.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999998775
No 487
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.99 E-value=0.014 Score=54.75 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=24.4
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+...+.|.||+|+|||||++.|+....
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 4567899999999999999999998764
No 488
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.96 E-value=0.0068 Score=49.17 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.+.-+.|.||+|+|||++++.|....
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhC
Confidence 34568899999999999999998754
No 489
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.93 E-value=0.0091 Score=51.35 Aligned_cols=23 Identities=39% Similarity=0.839 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHH-Hhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNR-ISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlkl-L~Gl~ 127 (317)
.++|+|++|||||||++. +.|-.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 478999999999999998 65654
No 490
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.93 E-value=0.014 Score=52.00 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=21.8
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
-.+||+|+.||||||+.+.|+--+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999977654
No 491
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.92 E-value=0.011 Score=57.09 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|||++|+|||||++.|.|-.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 492
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=94.88 E-value=0.015 Score=54.64 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=27.4
Q ss_pred eeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 94 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 94 ~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
..+.++++---.++|+|.++||||||++.|++--
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~~ 182 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAK 182 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEEC
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCC
Confidence 4456666655569999999999999999998763
No 493
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.88 E-value=0.0047 Score=52.41 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|||||||++.+.+-
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 5899999999999999887753
No 494
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.86 E-value=0.013 Score=58.86 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.|-++.|+|.+||||||+++.|...+.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 456899999999999999999998764
No 495
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.84 E-value=0.014 Score=54.83 Aligned_cols=25 Identities=40% Similarity=0.836 Sum_probs=22.3
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+.|.||+|+|||||++.|+..+.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999999999999999998774
No 496
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=94.76 E-value=0.01 Score=55.57 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|..|||||||++.|.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999963
No 497
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=94.76 E-value=0.013 Score=55.57 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
++..++++|.+|+|||||++.|.|-.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 57789999999999999999999974
No 498
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.76 E-value=0.014 Score=56.00 Aligned_cols=71 Identities=7% Similarity=-0.010 Sum_probs=51.5
Q ss_pred ChHHHHHHHHHHHHcCC-Ccc-----------------------cCCCCCCEEEEecc-chhcCcHHHHHhhcccceecc
Q 021147 217 SDVEKQYNQIVATTFNC-PYL-----------------------SFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGI 271 (317)
Q Consensus 217 ~~~~~~~~~~~a~~~~l-~~~-----------------------~l~~~~~~~i~~hg-~~~~LSgG~~qRl~iaral~~ 271 (317)
.|++++|++++|+++.. |.. .+..+.++++++|. .+..+|+.... |.-++.+..
T Consensus 156 LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~v-l~~G~i~~~ 234 (390)
T 3gd7_A 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLV-IEENKVRQY 234 (390)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEE-EETTEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEE-EECCEEEEE
Confidence 79999999999998876 211 03457889999995 44455665554 667888888
Q ss_pred ccceeeccCCCCCCHHHHH
Q 021147 272 PPAKQIFDIPESSDPENEL 290 (317)
Q Consensus 272 ~p~ilIlDEPtsLD~~t~~ 290 (317)
+++..+++.|.+ .....
T Consensus 235 g~~~el~~~p~~--~~va~ 251 (390)
T 3gd7_A 235 DSILELYHYPAD--RFVAG 251 (390)
T ss_dssp SSHHHHHHCCSB--HHHHH
T ss_pred CCHHHHHhCCCc--hHHHh
Confidence 888888888887 44433
No 499
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.75 E-value=0.015 Score=59.19 Aligned_cols=26 Identities=19% Similarity=0.451 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+|.++.|+|.+||||||+++.|...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999876
No 500
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.75 E-value=0.018 Score=53.18 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+..+.|.||+|+|||+|+++|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 68899999999999999999988654
Done!