Query 021148
Match_columns 316
No_of_seqs 123 out of 221
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 07:58:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021148.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021148hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08569 Mo25: Mo25-like; Int 100.0 1E-112 2E-117 823.3 19.7 292 1-296 1-298 (335)
2 KOG1566 Conserved protein Mo25 100.0 2E-108 4E-113 780.2 23.8 296 1-296 1-301 (342)
3 PF08767 CRM1_C: CRM1 C termin 86.8 14 0.0003 36.0 12.7 173 81-254 73-272 (319)
4 PF10508 Proteasom_PSMB: Prote 83.0 32 0.0007 35.5 14.0 138 124-269 75-215 (503)
5 cd00020 ARM Armadillo/beta-cat 79.7 15 0.00032 28.3 8.1 97 138-238 21-118 (120)
6 KOG1566 Conserved protein Mo25 78.9 3.3 7.3E-05 41.1 4.9 137 124-261 37-183 (342)
7 cd00020 ARM Armadillo/beta-cat 71.0 21 0.00046 27.4 6.9 114 74-192 2-118 (120)
8 PTZ00446 vacuolar sorting prot 69.1 8.4 0.00018 35.5 4.8 28 1-28 1-41 (191)
9 KOG0946 ER-Golgi vesicle-tethe 64.5 97 0.0021 34.7 12.2 118 66-197 108-244 (970)
10 KOG0946 ER-Golgi vesicle-tethe 64.1 51 0.0011 36.8 10.0 156 65-269 21-179 (970)
11 PLN03200 cellulose synthase-in 63.2 1.3E+02 0.0029 36.9 14.0 178 75-269 526-707 (2102)
12 PLN03200 cellulose synthase-in 60.3 4.2E+02 0.0091 33.0 18.2 181 71-269 438-622 (2102)
13 KOG1991 Nuclear transport rece 57.2 2.2E+02 0.0047 32.6 13.5 157 90-267 49-233 (1010)
14 KOG1525 Sister chromatid cohes 55.5 3.6E+02 0.0078 31.8 15.3 237 9-269 16-313 (1266)
15 PF05952 ComX: Bacillus compet 55.5 7.8 0.00017 29.2 1.6 19 117-135 5-23 (57)
16 PF08064 UME: UME (NUC010) dom 55.4 12 0.00026 30.8 2.9 74 201-282 2-84 (107)
17 KOG1992 Nuclear export recepto 54.5 44 0.00096 37.3 7.6 22 202-224 226-247 (960)
18 PF12783 Sec7_N: Guanine nucle 53.9 1.1E+02 0.0024 26.4 8.9 135 95-243 4-149 (168)
19 PTZ00429 beta-adaptin; Provisi 52.2 3.7E+02 0.0079 29.8 14.6 69 176-255 308-380 (746)
20 KOG0166 Karyopherin (importin) 46.3 1.3E+02 0.0028 31.9 9.3 115 72-191 357-483 (514)
21 PF12717 Cnd1: non-SMC mitotic 45.6 47 0.001 29.2 5.3 72 181-269 4-76 (178)
22 PF12717 Cnd1: non-SMC mitotic 45.5 1.3E+02 0.0028 26.4 8.1 82 166-252 64-152 (178)
23 PF08569 Mo25: Mo25-like; Int 45.3 2.5E+02 0.0055 27.9 10.8 141 70-213 155-304 (335)
24 PF10508 Proteasom_PSMB: Prote 42.9 4E+02 0.0087 27.6 13.7 147 121-275 114-266 (503)
25 PF00514 Arm: Armadillo/beta-c 42.8 74 0.0016 21.0 4.8 37 71-107 4-40 (41)
26 PF07304 SRA1: Steroid recepto 40.7 78 0.0017 28.0 5.9 40 41-80 67-106 (157)
27 KOG1655 Protein involved in va 40.4 1E+02 0.0023 28.9 6.8 68 1-77 1-70 (218)
28 cd03572 ENTH_epsin_related ENT 36.5 2.3E+02 0.0049 24.3 7.8 84 66-152 20-110 (122)
29 PF01417 ENTH: ENTH domain; I 34.7 1.1E+02 0.0023 25.5 5.5 91 58-152 14-112 (125)
30 PF06757 Ins_allergen_rp: Inse 29.8 71 0.0015 28.4 3.9 24 157-180 24-47 (179)
31 PF15087 DUF4551: Protein of u 29.2 4.8E+02 0.01 28.4 10.3 199 15-239 374-613 (617)
32 PF13929 mRNA_stabil: mRNA sta 28.5 5.4E+02 0.012 25.4 9.9 146 95-255 111-264 (292)
33 PF14680 FANCI_HD2: FANCI heli 28.3 54 0.0012 30.9 3.0 46 145-213 36-84 (234)
34 PF04388 Hamartin: Hamartin pr 27.2 2.7E+02 0.0058 30.3 8.3 99 166-269 5-124 (668)
35 KOG1920 IkappaB kinase complex 26.7 6.1E+02 0.013 29.9 11.0 96 7-117 862-959 (1265)
36 PF03378 CAS_CSE1: CAS/CSE pro 26.5 7.2E+02 0.016 25.5 11.8 137 98-267 117-253 (435)
37 KOG0166 Karyopherin (importin) 25.2 7.6E+02 0.017 26.3 10.9 145 70-224 312-470 (514)
38 PF11791 Aconitase_B_N: Aconit 24.9 58 0.0013 29.2 2.4 53 221-274 73-129 (154)
39 PF09090 MIF4G_like_2: MIF4G l 24.7 3.4E+02 0.0073 25.5 7.6 127 5-165 3-137 (253)
40 PF13646 HEAT_2: HEAT repeats; 23.5 1E+02 0.0023 22.7 3.3 28 210-238 31-58 (88)
41 COG5108 RPO41 Mitochondrial DN 22.7 1.9E+02 0.0041 32.3 6.0 84 173-268 75-162 (1117)
42 PTZ00464 SNF-7-like protein; P 22.7 4E+02 0.0088 24.8 7.6 27 1-27 1-31 (211)
43 PHA02800 hypothetical protein; 22.5 4.6E+02 0.0099 23.7 7.4 84 132-216 44-138 (161)
44 PF03224 V-ATPase_H_N: V-ATPas 21.7 2.4E+02 0.0053 26.9 6.2 82 183-269 75-182 (312)
45 PF06393 BID: BH3 interacting 21.6 1.8E+02 0.0039 27.2 4.9 72 39-116 83-166 (196)
46 PRK15201 fimbriae regulatory p 21.2 76 0.0017 29.5 2.4 86 50-145 69-159 (198)
47 COG0255 RpmC Ribosomal protein 20.6 1.4E+02 0.0031 23.3 3.5 49 8-56 9-60 (69)
48 KOG3230 Vacuolar assembly/sort 20.6 5.3E+02 0.011 24.4 7.7 66 1-78 1-68 (224)
49 KOG2056 Equilibrative nucleosi 20.4 5E+02 0.011 26.2 8.1 46 61-106 35-80 (336)
No 1
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=100.00 E-value=9.7e-113 Score=823.29 Aligned_cols=292 Identities=52% Similarity=0.828 Sum_probs=258.1
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhch
Q 021148 1 MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENT 80 (316)
Q Consensus 1 M~~lF~~~~ktP~elVr~l~e~l~~L~~~~~~~~~K~~~k~eeisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dl 80 (316)
|+||||++||||+|+||+++|+|.+|+ +..++++++..|||+|+|++||.||+|++|.+|++|+|+||++|+|++|+
T Consensus 1 M~FlF~k~~KtP~ElVr~l~e~L~~L~---~~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa~Ei~~~dl 77 (335)
T PF08569_consen 1 MSFLFKKKPKTPAELVRSLREALEKLD---SKSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLAQEIYRSDL 77 (335)
T ss_dssp -----------HHHHHHHHHHHHHHHH---SS-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHHHHHHHHTH
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHhc---cccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhCH
Confidence 999999999999999999999999998 22556777778999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCc-cchhhhhcC-hhHHHHHHHhcCCchhhHhHHHHHHHHHHHHHHH
Q 021148 81 LRLLITCLPKLNLEARKDATQVVANLQRQQVHSKL-IASDYLEAN-IDLLDILIAGYENTDMALHYGAMLRECIRHQSVA 158 (316)
Q Consensus 81 l~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~-p~v~Yl~~~-peil~~Ll~gY~~~dial~~G~mLREcir~e~la 158 (316)
+..||.+|+.||||+|||+++||++++|+++|+++ |+|+||++| |||+++|++||++||+|++||.|||||+|||++|
T Consensus 78 l~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~ 157 (335)
T PF08569_consen 78 LYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHESLA 157 (335)
T ss_dssp HHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999 999999999 9999999999999999999999999999999999
Q ss_pred HHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhchhhHHHHH
Q 021148 159 RYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDI 238 (316)
Q Consensus 159 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQSLKLLgel 238 (316)
++||++++||+||+|++.++||||||||+||+|+||+||++||+||.+|||+||++|| +||+|+|||||||||||||||
T Consensus 158 ~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~-~Ll~s~NYvtkrqslkLL~el 236 (335)
T PF08569_consen 158 KIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYN-KLLESSNYVTKRQSLKLLGEL 236 (335)
T ss_dssp HHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHH-HHCT-SSHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-HHccCCCeEeehhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred hccCCcHHHHHHhhcChhhHHHHHHHhccCC----CCcceeeeeeeeccCCCCCCccccccc
Q 021148 239 LLDRSNSVVMTRYVSSRENLRILMNLLRVRY----FPRMHVEDIFYLAYQKLQGTEPVTFDK 296 (316)
Q Consensus 239 LLdr~N~~vM~rYIs~~eNLKl~M~LL~d~s----~EAFHVFKvFVANP~K~~~~~~~~~~~ 296 (316)
|+||+|++||+|||+||+|||+||+||+|+| ||||||||||||||||||+|..||.+.
T Consensus 237 lldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~N 298 (335)
T PF08569_consen 237 LLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKN 298 (335)
T ss_dssp HHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHT
T ss_pred HHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999 999999999999999999999999875
No 2
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=100.00 E-value=1.8e-108 Score=780.22 Aligned_cols=296 Identities=54% Similarity=0.835 Sum_probs=289.9
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhch
Q 021148 1 MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENT 80 (316)
Q Consensus 1 M~~lF~~~~ktP~elVr~l~e~l~~L~~~~~~~~~K~~~k~eeisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dl 80 (316)
|++||+++||||+|+||.+||+|..+++.++..++|+++++|||+|++..+|+|+||++|.||.+|+|+||++|+|+.|+
T Consensus 1 M~~~f~k~~ktP~d~Vr~~rd~l~~~~~~~~l~~~~~~k~~eevsk~l~~~k~il~Gn~e~eP~~e~~~qLtqef~~~~~ 80 (342)
T KOG1566|consen 1 MFFLFKKSPKTPADVVRRTRDKLKFLDKVRDLLDHKREKAVEEVSKNLDMLKSILYGNDEAEPFAEAVAQLTQEFYNADV 80 (342)
T ss_pred CCCccCCCCCCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHhhhHHheeCCCCCCCChHHHHHHHHHHHhCCc
Confidence 89999999999999999999999999988766889999989999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhcCC-chhhHhHHHHHHHHHHHHHHHH
Q 021148 81 LRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYEN-TDMALHYGAMLRECIRHQSVAR 159 (316)
Q Consensus 81 l~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY~~-~dial~~G~mLREcir~e~la~ 159 (316)
+.+||+++|+++||+|||+++||++++|||+|+|+|+|+|+++|||+++.|++||++ ||+|++||+|||||+|||.||+
T Consensus 81 l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~Lak 160 (342)
T KOG1566|consen 81 LSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEFLAK 160 (342)
T ss_pred hHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999996 9999999999999999999999
Q ss_pred HHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhchhhHHHHHh
Q 021148 160 YVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDIL 239 (316)
Q Consensus 160 ~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQSLKLLgelL 239 (316)
++|+|++||+||.||+.|+||||||||+|||++||+||.+|||||.+|||+||.+|+++|++|+||||||||+|||||+|
T Consensus 161 iiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~ll 240 (342)
T KOG1566|consen 161 IILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELL 240 (342)
T ss_pred HHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999996679999999999999999999999
Q ss_pred ccCCcHHHHHHhhcChhhHHHHHHHhccCC----CCcceeeeeeeeccCCCCCCccccccc
Q 021148 240 LDRSNSVVMTRYVSSRENLRILMNLLRVRY----FPRMHVEDIFYLAYQKLQGTEPVTFDK 296 (316)
Q Consensus 240 Ldr~N~~vM~rYIs~~eNLKl~M~LL~d~s----~EAFHVFKvFVANP~K~~~~~~~~~~~ 296 (316)
+||+|+.+|++||++|+|||+||+||||+| +||||||||||||||||++|-.|+-+.
T Consensus 241 ldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~N 301 (342)
T KOG1566|consen 241 LDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRN 301 (342)
T ss_pred hCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhC
Confidence 999999999999999999999999999999 999999999999999999999988654
No 3
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=86.77 E-value=14 Score=36.02 Aligned_cols=173 Identities=17% Similarity=0.187 Sum_probs=102.5
Q ss_pred HHHHHhcCCCCChhhhh-hHHHHHHHHhhhccCCCccchhhhhcC--hhHHHHHHHhcC-CchhhHhHHHHHHHHHHHHH
Q 021148 81 LRLLITCLPKLNLEARK-DATQVVANLQRQQVHSKLIASDYLEAN--IDLLDILIAGYE-NTDMALHYGAMLRECIRHQS 156 (316)
Q Consensus 81 l~~Li~~L~~L~fE~RK-dv~~If~~llr~~~~~r~p~v~Yl~~~--peil~~Ll~gY~-~~dial~~G~mLREcir~e~ 156 (316)
+..++..-..-..++|- .|-.+++.+.++-.+.-.|.+.-+..+ .-++.++-++++ .||....+=.+||-++++-.
T Consensus 73 ~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f 152 (319)
T PF08767_consen 73 LDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCF 152 (319)
T ss_dssp HHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhH
Confidence 33344344444555565 556666777665333222223222221 223333344444 69999999999999998743
Q ss_pred HHHHHhcchhhHhhhhhc----cCCCchhhhhHHHHHHHHHhhCh----HHHHHHHHhcHHHHHHHhhhhhccCCC-cee
Q 021148 157 VARYVLESQHMKKFFDYI----QLPNFDIAADAAATFKELLTRHK----STVAEFLSKNYDWFFAEYNSKLLESSN-YIT 227 (316)
Q Consensus 157 la~~iL~~~~f~~fF~yv----~~~~FdiasDAf~TfkelLt~Hk----~lvaefl~~Nyd~Ff~~yn~~LL~S~N-YVT 227 (316)
-+=.-|..+.|..+++.+ +.++-||+..++.++.+++++-. ..+.+|..+.|-.+..+.=.-|..+.. ..-
T Consensus 153 ~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf 232 (319)
T PF08767_consen 153 PALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGF 232 (319)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGH
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHH
Confidence 332337777888888765 68999999999999999999643 455588888877666664323433332 222
Q ss_pred hhchhhHHHHHhc--------------cCCcHHHHHHhhcC
Q 021148 228 RRQAVKLLGDILL--------------DRSNSVVMTRYVSS 254 (316)
Q Consensus 228 kRQSLKLLgelLL--------------dr~N~~vM~rYIs~ 254 (316)
+.|+ .+|..|+. ..+|..++..|+++
T Consensus 233 ~~q~-~iL~~Lf~~ve~~~i~~~l~~~~~~n~~~v~~~i~~ 272 (319)
T PF08767_consen 233 KLQS-QILSNLFRLVESGSIQVPLFDPGMSNQEFVSEYIAN 272 (319)
T ss_dssp HHHH-HHHHHHHHHHHTT-SSSSSSSTTT-HHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHcccccccccCCCCccHHHHHHHHHH
Confidence 3333 66666661 23677777777754
No 4
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=83.01 E-value=32 Score=35.48 Aligned_cols=138 Identities=17% Similarity=0.243 Sum_probs=98.7
Q ss_pred ChhHHHHHHHhcCCchhhH--hHHHHHHHHHHHHHH-HHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHH
Q 021148 124 NIDLLDILIAGYENTDMAL--HYGAMLRECIRHQSV-ARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTV 200 (316)
Q Consensus 124 ~peil~~Ll~gY~~~dial--~~G~mLREcir~e~l-a~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lv 200 (316)
-|++...|..|..+|+-.+ .+=..|+-|+++... +..+.+.+.+-.+...+..++-+||..|...++.+.. |+.-.
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~ 153 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGL 153 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhH
Confidence 5777778888877654433 222337778886655 5556666667777788999999999999999999986 45455
Q ss_pred HHHHHhcHHHHHHHhhhhhccCCCceehhchhhHHHHHhccCCcHHHHHHhhcChhhHHHHHHHhccCC
Q 021148 201 AEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 201 aefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQSLKLLgelLLdr~N~~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
+..+..|. ..+.. .|+.++|=+.|.+.+-++.++- +.+...+ .|+.+..-+..+...|.++-
T Consensus 154 ~~l~~~~~---~~~L~-~l~~~~~~~vR~Rv~el~v~i~--~~S~~~~-~~~~~sgll~~ll~eL~~dD 215 (503)
T PF10508_consen 154 EQLFDSNL---LSKLK-SLMSQSSDIVRCRVYELLVEIA--SHSPEAA-EAVVNSGLLDLLLKELDSDD 215 (503)
T ss_pred HHHhCcch---HHHHH-HHHhccCHHHHHHHHHHHHHHH--hcCHHHH-HHHHhccHHHHHHHHhcCcc
Confidence 56666664 55664 7888877788889999999986 4444444 45555567888888787754
No 5
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=79.68 E-value=15 Score=28.30 Aligned_cols=97 Identities=13% Similarity=0.130 Sum_probs=70.9
Q ss_pred chhhHhHHHHHHHHHHH-HHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhh
Q 021148 138 TDMALHYGAMLRECIRH-QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYN 216 (316)
Q Consensus 138 ~dial~~G~mLREcir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn 216 (316)
++.-..+-..|.....+ +.....++..+.+..+.+++..++-++.-.|..++..+....+.....+...+ +.....
T Consensus 21 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g---~l~~l~ 97 (120)
T cd00020 21 ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAG---GVPKLV 97 (120)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCC---ChHHHH
Confidence 45555555566666665 77778888888888888899889999999999999999776554333444333 444453
Q ss_pred hhhccCCCceehhchhhHHHHH
Q 021148 217 SKLLESSNYITRRQAVKLLGDI 238 (316)
Q Consensus 217 ~~LL~S~NYVTkRQSLKLLgel 238 (316)
+++.+++.=++++++-+|+.|
T Consensus 98 -~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 98 -NLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred -HHHhcCCHHHHHHHHHHHHHh
Confidence 677788888899999888876
No 6
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=78.90 E-value=3.3 Score=41.08 Aligned_cols=137 Identities=15% Similarity=0.175 Sum_probs=98.4
Q ss_pred ChhHHHHHHHhcCCchhhHhHHHHHHHHHH-HHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhCh---HH
Q 021148 124 NIDLLDILIAGYENTDMALHYGAMLRECIR-HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHK---ST 199 (316)
Q Consensus 124 ~peil~~Ll~gY~~~dial~~G~mLREcir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk---~l 199 (316)
+-++++.+.+||..+...+......+.-.. .-+|+.-+-.++.+.....+...-.||--=|+...|.-++.++. ..
T Consensus 37 ~~k~~eevsk~l~~~k~il~Gn~e~eP~~e~~~qLtqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~ 116 (342)
T KOG1566|consen 37 REKAVEEVSKNLDMLKSILYGNDEAEPFAEAVAQLTQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSP 116 (342)
T ss_pred HHHHHHHHHHHHhhhHHheeCCCCCCCChHHHHHHHHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcch
Confidence 356666666777666655555555554333 22455556666778888888888889988899999999998765 67
Q ss_pred HHHHHHhcHHHHH---HHhh---hhhccCCCceehhchhhHHHHHhccCCcHHHHHHhhcChhhHHHH
Q 021148 200 VAEFLSKNYDWFF---AEYN---SKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRIL 261 (316)
Q Consensus 200 vaefl~~Nyd~Ff---~~yn---~~LL~S~NYVTkRQSLKLLgelLLdr~N~~vM~rYIs~~eNLKl~ 261 (316)
+++||..|.+-.+ ..|. ...|+.+|..-.--+-+.|++++|.-.|+.-.-.||..|.. ++.
T Consensus 117 tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~LakiiL~s~~~~~FF~~vq~p~F-dia 183 (342)
T KOG1566|consen 117 TVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEFLAKIILESTNFEKFFLYVQLPNF-DIA 183 (342)
T ss_pred HHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHHHHHHHHcchhHHHHHHHHhccch-HHH
Confidence 7799988766533 2221 24677777776666678899999999999999999998876 553
No 7
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=70.99 E-value=21 Score=27.45 Aligned_cols=114 Identities=18% Similarity=0.169 Sum_probs=75.7
Q ss_pred HHHhhchHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHh--cCCchhhHhHHHHHHHH
Q 021148 74 EFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAG--YENTDMALHYGAMLREC 151 (316)
Q Consensus 74 ei~~~dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~g--Y~~~dial~~G~mLREc 151 (316)
++++.+.+..|+..|..=+.+.|..+.....++-.... +....+.+ .+++..|+.. .+++++...+-..|+..
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~----~~~~~~~~-~~~i~~l~~~l~~~~~~v~~~a~~~L~~l 76 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNN----DNIQAVVE-AGGLPALVQLLKSEDEEVVKAALWALRNL 76 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCH----HHHHHHHH-CCChHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 56778888888888888888889988888888766432 22334433 2333333222 24678888888888887
Q ss_pred HHHHH-HHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHH
Q 021148 152 IRHQS-VARYVLESQHMKKFFDYIQLPNFDIAADAAATFKEL 192 (316)
Q Consensus 152 ir~e~-la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkel 192 (316)
..++. ....+...+....+.+++..++-++...|..++..+
T Consensus 77 ~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 77 AAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred ccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 77764 444455556677777777777777766666666543
No 8
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=69.08 E-value=8.4 Score=35.46 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=19.9
Q ss_pred CCCCCCCCCCC-------------hHHHHHHHHHHHHHhhc
Q 021148 1 MKGLFKSKPRT-------------PVDIVRQTRDLIIYANR 28 (316)
Q Consensus 1 M~~lF~~~~kt-------------P~elVr~l~e~l~~L~~ 28 (316)
|.|||||+.++ |.+-+-.+++++..|..
T Consensus 1 m~~~fgk~~~~~~~~~~~~~~~~~~~~AIl~Lk~~~~~L~k 41 (191)
T PTZ00446 1 MRFWFGKKKNSSECSDNKKKNNDEIYKAILKNREAIDALEK 41 (191)
T ss_pred CccccCCCCCCCcchhhhhccCCCHHHHHHHHHHHHHHHHH
Confidence 88999776444 55666677888777764
No 9
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.48 E-value=97 Score=34.70 Aligned_cols=118 Identities=17% Similarity=0.243 Sum_probs=76.8
Q ss_pred HHHHHHHHHHH-hhchHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhh-hcChhHHHHHHHhcCCchhhHh
Q 021148 66 EACAQLTAEFF-RENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYL-EANIDLLDILIAGYENTDMALH 143 (316)
Q Consensus 66 e~~~qLa~ei~-~~dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl-~~~peil~~Ll~gY~~~dial~ 143 (316)
+.-.++|..++ +.|.+..|+..+...||-.|.-..++++++++.+. +-++-. ..+|-=+..|+.--.+
T Consensus 108 d~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~----~e~q~~ll~~P~gIS~lmdlL~D------ 177 (970)
T KOG0946|consen 108 DLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRP----TELQDALLVSPMGISKLMDLLRD------ 177 (970)
T ss_pred HHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCC----HHHHHHHHHCchhHHHHHHHHhh------
Confidence 34567888775 45899999999999999999999999999998443 334433 4677666666543322
Q ss_pred HHHHHHHHHHHHHH-------------HHHHhcchhhHhhhhhcc----CCCchhhhhHHHHHHHHHhhCh
Q 021148 144 YGAMLRECIRHQSV-------------ARYVLESQHMKKFFDYIQ----LPNFDIAADAAATFKELLTRHK 197 (316)
Q Consensus 144 ~G~mLREcir~e~l-------------a~~iL~~~~f~~fF~yv~----~~~FdiasDAf~TfkelLt~Hk 197 (316)
-||-||.|.+ -+++-....|.++|+-++ +..==|.-|+..-+.-||..|-
T Consensus 178 ----srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~ 244 (970)
T KOG0946|consen 178 ----SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI 244 (970)
T ss_pred ----hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc
Confidence 1344444443 333333445666666664 2222356678877777777764
No 10
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.08 E-value=51 Score=36.76 Aligned_cols=156 Identities=19% Similarity=0.256 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHhhchHHHHHhcCCCCChhhhhhHHHHHHHHhhh---ccCCCccchhhhhcChhHHHHHHHhcCCchhh
Q 021148 65 SEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQ---QVHSKLIASDYLEANIDLLDILIAGYENTDMA 141 (316)
Q Consensus 65 ~e~~~qLa~ei~~~dll~~Li~~L~~L~fE~RKdv~~If~~llr~---~~~~r~p~v~Yl~~~peil~~Ll~gY~~~dia 141 (316)
.|.+..|...++.+-++ |-|||++.=...+-|. .+|.. -=+-++..|=+-|.++|+.
T Consensus 21 aETI~kLcDRvessTL~------------eDRR~A~rgLKa~srkYR~~Vga~--------Gmk~li~vL~~D~~D~E~i 80 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLL------------EDRRDAVRGLKAFSRKYREEVGAQ--------GMKPLIQVLQRDYMDPEII 80 (970)
T ss_pred HhHHHHHHHHHhhccch------------hhHHHHHHHHHHHHHHHHHHHHHc--------ccHHHHHHHhhccCCHHHH
Confidence 45577777777766554 6688887655554442 12211 1267788888888888876
Q ss_pred HhHHHHHHHHHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhcc
Q 021148 142 LHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLE 221 (316)
Q Consensus 142 l~~G~mLREcir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~ 221 (316)
-.+=..+--.++|+. +-.-+..+. .+.|-=.-|-|.|+..+..+.--+. +.++|+
T Consensus 81 k~~LdTl~il~~~dd-------------~~~v~dds~--qsdd~g~~iae~fik~qd~I~lll~-----~~e~~D----- 135 (970)
T KOG0946|consen 81 KYALDTLLILTSHDD-------------SPEVMDDST--QSDDLGLWIAEQFIKNQDNITLLLQ-----SLEEFD----- 135 (970)
T ss_pred HHHHHHHHHHHhcCc-------------chhhcccch--hhhHHHHHHHHHHHcCchhHHHHHH-----HHHhhc-----
Confidence 444333333333332 222334455 5666666778888877755553332 333444
Q ss_pred CCCceehhchhhHHHHHhccCCcHHHHHHhhcChhhHHHHHHHhccCC
Q 021148 222 SSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 222 S~NYVTkRQSLKLLgelLLdr~N~~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
+-.||-+++||..+|-.|. -++-..-+.+|-..-.||-+|+|..
T Consensus 136 ---F~VR~~aIqLlsalls~r~-~e~q~~ll~~P~gIS~lmdlL~Dsr 179 (970)
T KOG0946|consen 136 ---FHVRLYAIQLLSALLSCRP-TELQDALLVSPMGISKLMDLLRDSR 179 (970)
T ss_pred ---hhhhhHHHHHHHHHHhcCC-HHHHHHHHHCchhHHHHHHHHhhhh
Confidence 8889999999999999998 6788888999999999999999976
No 11
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=63.22 E-value=1.3e+02 Score=36.94 Aligned_cols=178 Identities=11% Similarity=0.143 Sum_probs=118.0
Q ss_pred HHhhchHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhcCCchhhH----hHHHHHHH
Q 021148 75 FFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMAL----HYGAMLRE 150 (316)
Q Consensus 75 i~~~dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY~~~dial----~~G~mLRE 150 (316)
+.+.+.+..|+.-|..=+++.|+.++..-.++.+..... .+ +.++.+ +.+ +++.+-. ..|.|+-.
T Consensus 526 V~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~---~I------~~Lv~L-Lls-dd~~~~~~aL~vLgnIlsl 594 (2102)
T PLN03200 526 VESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA---TI------SQLTAL-LLG-DLPESKVHVLDVLGHVLSV 594 (2102)
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh---HH------HHHHHH-hcC-CChhHHHHHHHHHHHHHhh
Confidence 346688888898888889999999988877777632111 11 222222 111 2222222 23444443
Q ss_pred HHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhc
Q 021148 151 CIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQ 230 (316)
Q Consensus 151 cir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQ 230 (316)
+-.++...........+..+.+.++.++=++--+|..++-.+.+.+++.....+..+- +.-.- .||.+++.-++++
T Consensus 595 ~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~aga---IpPLV-~LLss~~~~v~ke 670 (2102)
T PLN03200 595 ASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEI---INPCI-KLLTNNTEAVATQ 670 (2102)
T ss_pred cchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCC---HHHHH-HHHhcCChHHHHH
Confidence 3344434444445567778888888888888889999999999998888777666552 22332 6899999999999
Q ss_pred hhhHHHHHhccCCcHHHHHHhhcChhhHHHHHHHhccCC
Q 021148 231 AVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 231 SLKLLgelLLdr~N~~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
+-.-|+.+.. ....--..++-+..-++-.+.||++++
T Consensus 671 AA~AL~nL~~--~~~~~q~~~~v~~GaV~pL~~LL~~~d 707 (2102)
T PLN03200 671 SARALAALSR--SIKENRKVSYAAEDAIKPLIKLAKSSS 707 (2102)
T ss_pred HHHHHHHHHh--CCCHHHHHHHHHcCCHHHHHHHHhCCC
Confidence 9999999994 333332234445667888999999987
No 12
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=60.35 E-value=4.2e+02 Score=32.96 Aligned_cols=181 Identities=18% Similarity=0.165 Sum_probs=119.7
Q ss_pred HHHHHHhhchHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcC--hhHHHHHHHhcCCchhhHhHHHHH
Q 021148 71 LTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEAN--IDLLDILIAGYENTDMALHYGAML 148 (316)
Q Consensus 71 La~ei~~~dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~--peil~~Ll~gY~~~dial~~G~mL 148 (316)
..+.+.+.+.+..|+..|..=+-+.|+.++...+++-....+++ .--+... |-++.+|-.| ++++--.+=..|
T Consensus 438 ~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr---~aIieaGaIP~LV~LL~s~--~~~iqeeAawAL 512 (2102)
T PLN03200 438 LWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESK---WAITAAGGIPPLVQLLETG--SQKAKEDSATVL 512 (2102)
T ss_pred HHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH---HHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHH
Confidence 44667777889999999988788888888888877754221111 1111122 4455555333 333333333333
Q ss_pred HHHHHHHH-HHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhC-hHHHHHHHHhcHHHHHHHhhhhhccCCCce
Q 021148 149 RECIRHQS-VARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRH-KSTVAEFLSKNYDWFFAEYNSKLLESSNYI 226 (316)
Q Consensus 149 REcir~e~-la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~H-k~lvaefl~~Nyd~Ff~~yn~~LL~S~NYV 226 (316)
-....++. ..+.+...+.+-.+++.++.+++++-..|..++..++... +..+ ..+ ..|+.+++--
T Consensus 513 ~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I------------~~L-v~LLlsdd~~ 579 (2102)
T PLN03200 513 WNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATI------------SQL-TALLLGDLPE 579 (2102)
T ss_pred HHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHH------------HHH-HHHhcCCChh
Confidence 33333443 4444556678888888888889998888888888776432 2211 334 2578888888
Q ss_pred ehhchhhHHHHHhccCCcHHHHHHhhcChhhHHHHHHHhccCC
Q 021148 227 TRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 227 TkRQSLKLLgelLLdr~N~~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
++-.+++.||.++---....+.+.-+.+..-+..+..||++.+
T Consensus 580 ~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs 622 (2102)
T PLN03200 580 SKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSK 622 (2102)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCC
Confidence 8888999999998766666666666767789999999999988
No 13
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.25 E-value=2.2e+02 Score=32.56 Aligned_cols=157 Identities=18% Similarity=0.199 Sum_probs=85.1
Q ss_pred CCChhhhhhHHHHHHHHhhhccCCC-ccchhhh-------hcChhHHHHHHHhcCCchhhHhHHHHHHHHHHHHHHHHHH
Q 021148 90 KLNLEARKDATQVVANLQRQQVHSK-LIASDYL-------EANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYV 161 (316)
Q Consensus 90 ~L~fE~RKdv~~If~~llr~~~~~r-~p~v~Yl-------~~~peil~~Ll~gY~~~dial~~G~mLREcir~e~la~~i 161 (316)
..|+-.|..++.-|.|...++-+++ .|...+- .=+..|+++++++.+- +-...|.. .+.|
T Consensus 49 ~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk~~irenIl~~iv~~p~~--iRvql~~~----------l~~I 116 (1010)
T KOG1991|consen 49 GVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDKAVIRENILETIVQVPEL--IRVQLTAC----------LNTI 116 (1010)
T ss_pred CCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHHHHHHHHHHHHHHhCchH--HHHHHHHH----------HHHH
Confidence 4555566666666677766554433 2221111 1245677777776321 11112222 2334
Q ss_pred hcch---hhHhhhhhc----cCCCchhhhhHHHHHHHHHhhCh-----------HHHHHHHHhcHHHHHHHhhhhhccCC
Q 021148 162 LESQ---HMKKFFDYI----QLPNFDIAADAAATFKELLTRHK-----------STVAEFLSKNYDWFFAEYNSKLLESS 223 (316)
Q Consensus 162 L~~~---~f~~fF~yv----~~~~FdiasDAf~TfkelLt~Hk-----------~lvaefl~~Nyd~Ff~~yn~~LL~S~ 223 (316)
++.+ ..|.+++++ +.+.=-.-=-|.-.+.+|...|+ .++.+++-. .-+..+ +|+..+
T Consensus 117 i~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~----il~~~~-~ll~~~ 191 (1010)
T KOG1991|consen 117 IKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPD----ILQIFN-GLLSQE 191 (1010)
T ss_pred HhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH----HHHHHH-hhcccc
Confidence 4443 456777655 33322222256777777777666 344444443 334454 799999
Q ss_pred CceehhchhhHHHHHhc--cCCcHHHHHHhhcChhhHHHHHHHhcc
Q 021148 224 NYITRRQAVKLLGDILL--DRSNSVVMTRYVSSRENLRILMNLLRV 267 (316)
Q Consensus 224 NYVTkRQSLKLLgelLL--dr~N~~vM~rYIs~~eNLKl~M~LL~d 267 (316)
|| ||.+++--+|- --..+--.-++..+++..---|.|+..
T Consensus 192 s~----~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~ 233 (1010)
T KOG1991|consen 192 SY----QSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLS 233 (1010)
T ss_pred ch----HHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHH
Confidence 99 88877766662 122233345677888888887877653
No 14
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=55.55 E-value=3.6e+02 Score=31.80 Aligned_cols=237 Identities=14% Similarity=0.153 Sum_probs=128.8
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHH-HHHhhhccCCCCCCcHHHHHHHHHHHHhhchHHHHHhc
Q 021148 9 PRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIR-ELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITC 87 (316)
Q Consensus 9 ~ktP~elVr~l~e~l~~L~~~~~~~~~K~~~k~eeisK~L~-~mK~il~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~ 87 (316)
+=|-.|+++.|++...-|.+.. .|. .. .+.+.+... -++..+....+++- +|--..|=+|+|+. .
T Consensus 16 ~~s~~ell~rLk~l~~~l~~~~--qd~-~~--~~~~~pl~~~l~~~~~L~h~d~dv------rllvacCvseilRi---~ 81 (1266)
T KOG1525|consen 16 PISKDELLKRLKKLANCLASLD--QDN-LD--LASLLPLADHLIKDFLLKHKDKDV------RLLVACCVSEILRI---Y 81 (1266)
T ss_pred cccHHHHHHHHHHHHHHHhhcc--cCc-hh--HHHHHHHHHHHhhHHHhcCCCcCh------hHHHHHHHHHHHHH---h
Confidence 4456788888888766665432 111 11 123333222 24555555554442 34444454555554 3
Q ss_pred CCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHh--------c-------------------CCchh
Q 021148 88 LPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAG--------Y-------------------ENTDM 140 (316)
Q Consensus 88 L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~g--------Y-------------------~~~di 140 (316)
-|.+||+.- +...||.-++++.-|=.-+..-|.-+++.|+..|... + ..|..
T Consensus 82 aPeaPy~~~-~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~ 160 (1266)
T KOG1525|consen 82 APEAPYTDE-QLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKK 160 (1266)
T ss_pred CCCCCCcHH-HHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHH
Confidence 577888877 8899999999977555445556666666666666321 1 23444
Q ss_pred hHhHHHHHHHHHHH-----HHHHHHHhcc----------------------------hhhHhhhhhccCCCchhhhhHHH
Q 021148 141 ALHYGAMLRECIRH-----QSVARYVLES----------------------------QHMKKFFDYIQLPNFDIAADAAA 187 (316)
Q Consensus 141 al~~G~mLREcir~-----e~la~~iL~~----------------------------~~f~~fF~yv~~~~FdiasDAf~ 187 (316)
..+-+.|++..|-- ..+..++|++ +...+|+.-.=...+-.-+.-..
T Consensus 161 v~~~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~ 240 (1266)
T KOG1525|consen 161 VFNMLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKI 240 (1266)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhh
Confidence 44455555555532 2233333322 12334443111111224445555
Q ss_pred HHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhchhhHHHHHhccCCcHHHHHHhhcChhhHHHHHHHhcc
Q 021148 188 TFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRV 267 (316)
Q Consensus 188 TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQSLKLLgelLLdr~N~~vM~rYIs~~eNLKl~M~LL~d 267 (316)
-+.+++-.+-.++.+-|..=.. +. ..=|.|+|=-+|-++++|+|.++.+...... =..+.-.+....-+.|
T Consensus 241 ~~he~i~~L~~~~p~ll~~vip----~l-~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~----~~~~~~~~~fl~r~~D 311 (1266)
T KOG1525|consen 241 KYHELILELWRIAPQLLLAVIP----QL-EFELLSEQEEVRLKAVKLVGRMFSDKDSQLS----ETYDDLWSAFLGRFND 311 (1266)
T ss_pred HHHHHHHHHHHhhHHHHHHHHH----HH-HHHHhcchHHHHHHHHHHHHHHHhcchhhhc----ccchHHHHHHHHHhcc
Confidence 6666666666666665554322 22 1236788888999999999999987664322 1234444445555556
Q ss_pred CC
Q 021148 268 RY 269 (316)
Q Consensus 268 ~s 269 (316)
.+
T Consensus 312 ~~ 313 (1266)
T KOG1525|consen 312 IS 313 (1266)
T ss_pred CC
Confidence 65
No 15
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=55.46 E-value=7.8 Score=29.24 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=16.7
Q ss_pred chhhhhcChhHHHHHHHhc
Q 021148 117 ASDYLEANIDLLDILIAGY 135 (316)
Q Consensus 117 ~v~Yl~~~peil~~Ll~gY 135 (316)
.|.||..|||++.-|..|=
T Consensus 5 iV~YLv~nPevl~kl~~g~ 23 (57)
T PF05952_consen 5 IVNYLVQNPEVLEKLKEGE 23 (57)
T ss_pred HHHHHHHChHHHHHHHcCC
Confidence 3899999999999998764
No 16
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=55.40 E-value=12 Score=30.82 Aligned_cols=74 Identities=14% Similarity=0.214 Sum_probs=50.8
Q ss_pred HHHHHhcHHHHHHHhhhhhcc---CCCceehhchhhHHHHHhccCCcHHHHHHhhcChhhHHHHHHHhc----cCC--CC
Q 021148 201 AEFLSKNYDWFFAEYNSKLLE---SSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLR----VRY--FP 271 (316)
Q Consensus 201 aefl~~Nyd~Ff~~yn~~LL~---S~NYVTkRQSLKLLgelLLdr~N~~vM~rYIs~~eNLKl~M~LL~----d~s--~E 271 (316)
++||..|+=..+..+|..|.. +..|..||++++=||+++- .+..||+.. --| ||..|+ .+. .+
T Consensus 2 ~~fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~------~~~~~i~~~-~pQ-I~a~L~sal~~~~l~~~ 73 (107)
T PF08064_consen 2 ADFLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIK------LGGSHISSA-RPQ-IMACLQSALEIPELREE 73 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHH------HhHHHHHHH-HHH-HHHHHHHHhCChhhHHH
Confidence 689999987778888766655 7999999999999999993 334444432 123 344443 333 66
Q ss_pred cceeeeeeeec
Q 021148 272 RMHVEDIFYLA 282 (316)
Q Consensus 272 AFHVFKvFVAN 282 (316)
|+.+..+||-+
T Consensus 74 al~~W~~fi~~ 84 (107)
T PF08064_consen 74 ALSCWNCFIKT 84 (107)
T ss_pred HHHHHHHHHHH
Confidence 77777777654
No 17
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.46 E-value=44 Score=37.32 Aligned_cols=22 Identities=32% Similarity=0.598 Sum_probs=19.3
Q ss_pred HHHHhcHHHHHHHhhhhhccCCC
Q 021148 202 EFLSKNYDWFFAEYNSKLLESSN 224 (316)
Q Consensus 202 efl~~Nyd~Ff~~yn~~LL~S~N 224 (316)
||+++|-+.|...+. ++++.+|
T Consensus 226 EFFEdnm~~wM~~F~-k~l~~~~ 247 (960)
T KOG1992|consen 226 EFFEDNMKTWMGAFH-KLLTYDN 247 (960)
T ss_pred HHHHhhHHHHHHHHH-HHHhccC
Confidence 899999999999996 8888655
No 18
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=53.94 E-value=1.1e+02 Score=26.38 Aligned_cols=135 Identities=21% Similarity=0.349 Sum_probs=79.3
Q ss_pred hhhhHHHHHHHHhhhcc--CCCccchhhhh--cC-----hhHHHHHHHhcCCchhhHhHHHHHHHHHHHHHHHHHHhcch
Q 021148 95 ARKDATQVVANLQRQQV--HSKLIASDYLE--AN-----IDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQ 165 (316)
Q Consensus 95 ~RKdv~~If~~llr~~~--~~r~p~v~Yl~--~~-----peil~~Ll~gY~~~dial~~G~mLREcir~e~la~~iL~~~ 165 (316)
..||+..||..|-+=.. .+.....+++. .. =|++...+.++ |..++..-+|..+.. ++.++
T Consensus 4 ~~~Da~~vf~~Lc~L~~~~~~~~~~~~~~~~~~~~k~l~LeLl~~iL~~~---------~~~f~~~~~~~~l~~-~lk~~ 73 (168)
T PF12783_consen 4 YVKDAFLVFRDLCSLSSKPSDPGNSPDFLSHDERSKLLSLELLESILENH---------GSVFRSSEEHPSLIN-LLKDD 73 (168)
T ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHhC---------HHHHhCCcchHHHHH-HHHHH
Confidence 35899999998876441 11111133332 11 23333333333 333331102223333 33344
Q ss_pred hhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCC--ceehhchhhHHHHHhccCC
Q 021148 166 HMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSN--YITRRQAVKLLGDILLDRS 243 (316)
Q Consensus 166 ~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~N--YVTkRQSLKLLgelLLdr~ 243 (316)
...-+.+.+..++|.|..-+...|.-++.+++ .+|..-.+.|+......++++++ |=.|.-+|..+.++.-++.
T Consensus 74 l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~----~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~ 149 (168)
T PF12783_consen 74 LCPALLKNLSSSDFPIFSRSLRIFLTLLSRFR----SHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQ 149 (168)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChh
Confidence 44455555666779999999999999998765 46666678899887644788776 5555668888888885543
No 19
>PTZ00429 beta-adaptin; Provisional
Probab=52.23 E-value=3.7e+02 Score=29.78 Aligned_cols=69 Identities=16% Similarity=0.290 Sum_probs=53.0
Q ss_pred CCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhchhhHHHHHhccCCcHHH----HHHh
Q 021148 176 LPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVV----MTRY 251 (316)
Q Consensus 176 ~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQSLKLLgelLLdr~N~~v----M~rY 251 (316)
.+.-+|.-=++.++..++.+|+.+. ..+++.||-.|| .++|| |+..|.+|..|. +..|... +..|
T Consensus 308 ss~~eiqyvaLr~I~~i~~~~P~lf----~~~~~~Ff~~~~-----Dp~yI-K~~KLeIL~~La-ne~Nv~~IL~EL~eY 376 (746)
T PTZ00429 308 RRDAETQYIVCKNIHALLVIFPNLL----RTNLDSFYVRYS-----DPPFV-KLEKLRLLLKLV-TPSVAPEILKELAEY 376 (746)
T ss_pred CCCccHHHHHHHHHHHHHHHCHHHH----HHHHHhhhcccC-----CcHHH-HHHHHHHHHHHc-CcccHHHHHHHHHHH
Confidence 4567888889999999999998654 446888997775 68896 999999999665 7777765 3467
Q ss_pred hcCh
Q 021148 252 VSSR 255 (316)
Q Consensus 252 Is~~ 255 (316)
+.+.
T Consensus 377 a~d~ 380 (746)
T PTZ00429 377 ASGV 380 (746)
T ss_pred hhcC
Confidence 7654
No 20
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.34 E-value=1.3e+02 Score=31.86 Aligned_cols=115 Identities=17% Similarity=0.190 Sum_probs=69.2
Q ss_pred HHHHHhhchHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhcC--Cchhh--------
Q 021148 72 TAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYE--NTDMA-------- 141 (316)
Q Consensus 72 a~ei~~~dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY~--~~dia-------- 141 (316)
++.+...++++.|+..|..=||..||.++=..+|+.- ++..--+.||.... ++.-|+.--. +.++.
T Consensus 357 iqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts---~g~~~qi~yLv~~g-iI~plcdlL~~~D~~ii~v~Ld~l~ 432 (514)
T KOG0166|consen 357 IQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTS---SGTPEQIKYLVEQG-IIKPLCDLLTCPDVKIILVALDGLE 432 (514)
T ss_pred HHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcc---cCCHHHHHHHHHcC-CchhhhhcccCCChHHHHHHHHHHH
Confidence 4678889999999999999999999999999999875 33333466776543 3333322221 22222
Q ss_pred --HhHHHHHHHHHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHH
Q 021148 142 --LHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKE 191 (316)
Q Consensus 142 --l~~G~mLREcir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfke 191 (316)
+-.|.+..+-=. +.++.+|=+.+...++-..=...|=||..-|+..+..
T Consensus 433 nil~~~e~~~~~~~-n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~ 483 (514)
T KOG0166|consen 433 NILKVGEAEKNRGT-NPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDT 483 (514)
T ss_pred HHHHHHHHhccccc-cHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHH
Confidence 222332222111 5566666666666665544445555665555544433
No 21
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=45.60 E-value=47 Score=29.21 Aligned_cols=72 Identities=19% Similarity=0.369 Sum_probs=52.1
Q ss_pred hhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhchhhHHHHHhccCCcHHHHHHhhcChhhH-H
Q 021148 181 IAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENL-R 259 (316)
Q Consensus 181 iasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQSLKLLgelLLdr~N~~vM~rYIs~~eNL-K 259 (316)
|-+-|..++-||..||+.++-.|+..= + ..|.+++=..|++++..|..|++. -||--...+ -
T Consensus 4 vR~n~i~~l~DL~~r~~~~ve~~~~~l----~-----~~L~D~~~~VR~~al~~Ls~Li~~--------d~ik~k~~l~~ 66 (178)
T PF12717_consen 4 VRNNAIIALGDLCIRYPNLVEPYLPNL----Y-----KCLRDEDPLVRKTALLVLSHLILE--------DMIKVKGQLFS 66 (178)
T ss_pred HHHHHHHHHHHHHHhCcHHHHhHHHHH----H-----HHHCCCCHHHHHHHHHHHHHHHHc--------CceeehhhhhH
Confidence 456788899999999998887665422 2 567788888999999999999864 234444444 5
Q ss_pred HHHHHhccCC
Q 021148 260 ILMNLLRVRY 269 (316)
Q Consensus 260 l~M~LL~d~s 269 (316)
.++.+|.|+.
T Consensus 67 ~~l~~l~D~~ 76 (178)
T PF12717_consen 67 RILKLLVDEN 76 (178)
T ss_pred HHHHHHcCCC
Confidence 5556666665
No 22
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=45.47 E-value=1.3e+02 Score=26.39 Aligned_cols=82 Identities=18% Similarity=0.286 Sum_probs=55.1
Q ss_pred hhHhhhhhccCCCchhhhhHHHHHHHHHhh-ChHHHHHHHHhcHHHHHHHhhhhhccC-----CCceehhchhhHHHHHh
Q 021148 166 HMKKFFDYIQLPNFDIAADAAATFKELLTR-HKSTVAEFLSKNYDWFFAEYNSKLLES-----SNYITRRQAVKLLGDIL 239 (316)
Q Consensus 166 ~f~~fF~yv~~~~FdiasDAf~TfkelLt~-Hk~lvaefl~~Nyd~Ff~~yn~~LL~S-----~NYVTkRQSLKLLgelL 239 (316)
.|+.+...+.-++=+|++-|-.-|.+++.+ ++..+ .+++-.....+| .-.+. .+.-.+++-.+.|-+.+
T Consensus 64 l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i----~~~~~e~i~~l~-~~~~~~~~~~~~~~~~~~I~~fll~~i 138 (178)
T PF12717_consen 64 LFSRILKLLVDENPEIRSLARSFFSELLKKRNPNII----YNNFPELISSLN-NCYEHPVYGPLSREKRKKIYKFLLDFI 138 (178)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHH----HHHHHHHHHHHh-CccccccccccCHHHHHHHHHHHHHHc
Confidence 458889889999999999999999999998 66555 444445555555 33333 33334455566666666
Q ss_pred c-cCCcHHHHHHhh
Q 021148 240 L-DRSNSVVMTRYV 252 (316)
Q Consensus 240 L-dr~N~~vM~rYI 252 (316)
- |+..+++..|..
T Consensus 139 ~~d~~~~~l~~kl~ 152 (178)
T PF12717_consen 139 DKDKQKESLVEKLC 152 (178)
T ss_pred CcHHHHHHHHHHHH
Confidence 6 666666655544
No 23
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=45.29 E-value=2.5e+02 Score=27.85 Aligned_cols=141 Identities=16% Similarity=0.242 Sum_probs=99.0
Q ss_pred HHHHHHHhhchHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhcCC-------chhhH
Q 021148 70 QLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYEN-------TDMAL 142 (316)
Q Consensus 70 qLa~ei~~~dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY~~-------~dial 142 (316)
.++.-+..++.+..+......=.||.--|+-..|..++-+. +..+.+|+..|-+-++....+-=. ..+-=
T Consensus 155 ~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~h---k~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslk 231 (335)
T PF08569_consen 155 SLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRH---KKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLK 231 (335)
T ss_dssp HHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSS---HHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHH
Confidence 45666666667777888888889999999999999988753 335789998887655544333222 22233
Q ss_pred hHHHHHHHHHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhh-Ch-HHHHHHHHhcHHHHHH
Q 021148 143 HYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTR-HK-STVAEFLSKNYDWFFA 213 (316)
Q Consensus 143 ~~G~mLREcir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~-Hk-~lvaefl~~Nyd~Ff~ 213 (316)
..|.+|-+=.-++...+|+=..+.+.-+...+..++=-|..+||..||--..+ || +-|.+.|..|=++...
T Consensus 232 LL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~ 304 (335)
T PF08569_consen 232 LLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLR 304 (335)
T ss_dssp HHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Confidence 45666666666777788887777888888888888888999999999987764 33 5677999988776443
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=42.95 E-value=4e+02 Score=27.56 Aligned_cols=147 Identities=16% Similarity=0.204 Sum_probs=97.3
Q ss_pred hhcChhHHHHHHHhcC--CchhhHhHHHHHHHHHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChH
Q 021148 121 LEANIDLLDILIAGYE--NTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKS 198 (316)
Q Consensus 121 l~~~peil~~Ll~gY~--~~dial~~G~mLREcir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~ 198 (316)
+...++++..++.+-. +.++|-.+..+|+...+++.-...++.++..-.+-+.+..++=.+-.=+++.+-.+.. |..
T Consensus 114 ~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~-~S~ 192 (503)
T PF10508_consen 114 LLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIAS-HSP 192 (503)
T ss_pred HhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHh-cCH
Confidence 3456777777766654 5678889999999999998888877776654444444443222233333444444433 333
Q ss_pred HHHHHHHhcHHHHHHHhhhhhccCCCceehhchhhHHHHHhccCCcHHHHHHhhcChhhHHHHHHHhccCC----CCcce
Q 021148 199 TVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRY----FPRMH 274 (316)
Q Consensus 199 lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQSLKLLgelLLdr~N~~vM~rYIs~~eNLKl~M~LL~d~s----~EAFH 274 (316)
-++++.... .++...- +.+.++--..|.-++.+|++|-...++. .|+.+..=++.+.++|.+.+ +-+++
T Consensus 193 ~~~~~~~~s--gll~~ll-~eL~~dDiLvqlnalell~~La~~~~g~----~yL~~~gi~~~L~~~l~~~~~dp~~~~~~ 265 (503)
T PF10508_consen 193 EAAEAVVNS--GLLDLLL-KELDSDDILVQLNALELLSELAETPHGL----QYLEQQGIFDKLSNLLQDSEEDPRLSSLL 265 (503)
T ss_pred HHHHHHHhc--cHHHHHH-HHhcCccHHHHHHHHHHHHHHHcChhHH----HHHHhCCHHHHHHHHHhccccCCcccchh
Confidence 444444432 3565553 5677788888999999999999877774 56777788888899987765 44554
Q ss_pred e
Q 021148 275 V 275 (316)
Q Consensus 275 V 275 (316)
|
T Consensus 266 l 266 (503)
T PF10508_consen 266 L 266 (503)
T ss_pred h
Confidence 4
No 25
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=42.82 E-value=74 Score=21.01 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=32.2
Q ss_pred HHHHHHhhchHHHHHhcCCCCChhhhhhHHHHHHHHh
Q 021148 71 LTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQ 107 (316)
Q Consensus 71 La~ei~~~dll~~Li~~L~~L~fE~RKdv~~If~~ll 107 (316)
-.+.+...+.+..|+..|..-+.+.|+.++-...|+-
T Consensus 4 ~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 4 NKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4567788999999999999999999999988887764
No 26
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=40.73 E-value=78 Score=27.98 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhch
Q 021148 41 MAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENT 80 (316)
Q Consensus 41 ~eeisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dl 80 (316)
.+|+.|.|..|-.-+-.+.=..|..+...+|++++-+.|+
T Consensus 67 ~~D~~KRL~iLfd~ln~g~Ls~~v~~~L~~L~~aL~~~d~ 106 (157)
T PF07304_consen 67 VDDIEKRLNILFDHLNNGKLSKPVVDKLHQLAQALQARDY 106 (157)
T ss_dssp HHHHHHHHHHHHHHHHHT-S-HHHHHHHHHHHHHHHHT-H
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCH
Confidence 5899999999998887665566777888999999877765
No 27
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.43 E-value=1e+02 Score=28.92 Aligned_cols=68 Identities=31% Similarity=0.456 Sum_probs=39.1
Q ss_pred CCCCCC-CCCCChHHHHHHHHHHHHHhhcCCCchhhhhHHHH-HHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHh
Q 021148 1 MKGLFK-SKPRTPVDIVRQTRDLIIYANRSADVRESKREDKM-AELCKNIRELKSILYGNSESEPVSEACAQLTAEFFR 77 (316)
Q Consensus 1 M~~lF~-~~~ktP~elVr~l~e~l~~L~~~~~~~~~K~~~k~-eeisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~ 77 (316)
|.-+|+ ++||.|.- +|.|+...+++.+..-+ ++-.++ .|++|+=.+|+.+=- .|..+.+.|=|-.+.+
T Consensus 1 MnRiFG~~k~k~p~p---sL~dai~~v~~r~dSve-~KIskLDaeL~k~~~Qi~k~R~-----gpaq~~~KqrAlrVLk 70 (218)
T KOG1655|consen 1 MNRIFGRGKPKEPPP---SLQDAIDSVNKRSDSVE-KKISKLDAELCKYKDQIKKTRP-----GPAQNALKQRALRVLK 70 (218)
T ss_pred CcccccCCCCCCCCh---hHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHhcCC-----CcchhHHHHHHHHHHH
Confidence 667895 55788854 45566666654332122 222233 779999999988833 3444555555544433
No 28
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=36.49 E-value=2.3e+02 Score=24.33 Aligned_cols=84 Identities=11% Similarity=0.036 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhh-----chHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhcCCch-
Q 021148 66 EACAQLTAEFFRE-----NTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTD- 139 (316)
Q Consensus 66 e~~~qLa~ei~~~-----dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY~~~d- 139 (316)
-...+||+..+.+ .++..|...|..=+--.+-.+-.|...|.+. ++...+.++..|..++..+...-.-||
T Consensus 20 y~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~---G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp 96 (122)
T cd03572 20 YLYEEIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEK---GNSDFKRELQRNSAQIRECANYKGPPDP 96 (122)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhh---CCHHHHHHHHHhHHHHHHHHHcCCCCCc
Confidence 4566777777775 4567777777776555555677788888774 345568888899999998754333233
Q ss_pred -hhHhHHHHHHHHH
Q 021148 140 -MALHYGAMLRECI 152 (316)
Q Consensus 140 -ial~~G~mLREci 152 (316)
-.-.-|...|+-.
T Consensus 97 ~~Gd~~~~~VR~~A 110 (122)
T cd03572 97 LKGDSLNEKVREEA 110 (122)
T ss_pred ccCcchhHHHHHHH
Confidence 4556677777655
No 29
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=34.67 E-value=1.1e+02 Score=25.45 Aligned_cols=91 Identities=19% Similarity=0.208 Sum_probs=42.9
Q ss_pred CCCCCCcHHHHHHHHHHHHhhc----hHHHHHhcC---CCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHH
Q 021148 58 NSESEPVSEACAQLTAEFFREN----TLRLLITCL---PKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDI 130 (316)
Q Consensus 58 ~~e~ep~~e~~~qLa~ei~~~d----ll~~Li~~L---~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~ 130 (316)
+++..|.+....+|++..|+++ .+..|...| +.=.+-..-.+-++...|++. +..-.++.+..+-++|..
T Consensus 14 ~d~~gp~~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~n---G~~~~~~~~~~~~~~I~~ 90 (125)
T PF01417_consen 14 NDPWGPPGKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKN---GSERFVDELRDHIDIIRE 90 (125)
T ss_dssp SSSSS--HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHH---S-HHHHHHHHHTHHHHHG
T ss_pred CCCCCcCHHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHhh
Confidence 4556788888999999888843 334444444 222232222333344444441 222245555556566666
Q ss_pred HHHhcCCch-hhHhHHHHHHHHH
Q 021148 131 LIAGYENTD-MALHYGAMLRECI 152 (316)
Q Consensus 131 Ll~gY~~~d-ial~~G~mLREci 152 (316)
| ..|..+| -.-..|.-+|+-.
T Consensus 91 l-~~f~~~d~~g~d~~~~VR~~A 112 (125)
T PF01417_consen 91 L-QDFQYVDPKGKDQGQNVREKA 112 (125)
T ss_dssp G-GG---BBTTSTBHHHHHHHHH
T ss_pred c-ceeeccCCCCccHHHHHHHHH
Confidence 6 3332222 2334444466543
No 30
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=29.75 E-value=71 Score=28.37 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=16.6
Q ss_pred HHHHHhcchhhHhhhhhccCCCch
Q 021148 157 VARYVLESQHMKKFFDYIQLPNFD 180 (316)
Q Consensus 157 la~~iL~~~~f~~fF~yv~~~~Fd 180 (316)
..+|+.+|+.|.++++|++.+.|.
T Consensus 24 ~~~Y~~~D~efq~~~~yl~s~~f~ 47 (179)
T PF06757_consen 24 VQRYYLEDAEFQAAVRYLNSSEFK 47 (179)
T ss_pred HHHHHHcCHHHHHHHHHHcChHHH
Confidence 455677777777777777666553
No 31
>PF15087 DUF4551: Protein of unknown function (DUF4551)
Probab=29.18 E-value=4.8e+02 Score=28.43 Aligned_cols=199 Identities=20% Similarity=0.304 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhHHHHHH--HHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhchHHHHHhcCCCCC
Q 021148 15 IVRQTRDLIIYANRSADVRESKREDKMAE--LCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLN 92 (316)
Q Consensus 15 lVr~l~e~l~~L~~~~~~~~~K~~~k~ee--isK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~L~~L~ 92 (316)
+|..|.|.|..=.+..+.. .+.+ .++| ++-.+.|+-..++.++|.+|+.=.+-.--+...-.|+|..|| +-|.++
T Consensus 374 lv~~L~eyLp~s~~~~~~q-~~~q-rADeL~~~i~i~qtL~lMFReTE~e~sRln~L~A~kg~l~~~LL~~Li-~~P~~p 450 (617)
T PF15087_consen 374 LVQTLHEYLPESRSKNGLQ-NKSQ-RADELELCILIIQTLGLMFRETEVEPSRLNTLAAKKGALFSNLLVILI-CEPQIP 450 (617)
T ss_pred HHHHHHHhcccCcCccccc-cccc-hHHHHHHHHHHHHHHHHHHhccccchhhHHHHHhhhhhhHHHHHHHHh-cCcccc
Confidence 4777777665322111101 1111 2344 566677888889989998887433332223334445554443 233332
Q ss_pred -----hhhhhhHHHHHHHHhhhccCCCccc--------hhhhhcChhHHHHHH-Hhc-----CCchhhHhHHHHHHHHHH
Q 021148 93 -----LEARKDATQVVANLQRQQVHSKLIA--------SDYLEANIDLLDILI-AGY-----ENTDMALHYGAMLRECIR 153 (316)
Q Consensus 93 -----fE~RKdv~~If~~llr~~~~~r~p~--------v~Yl~~~peil~~Ll-~gY-----~~~dial~~G~mLREcir 153 (316)
|+. +-++ ++..+. .+|+-+-..+|+.++ -|- ...+-.++.|-|+|..=-
T Consensus 451 ~~~~~~~~-~~~~-----------~~~~~~d~elq~L~~EYtdaAtalLfEillv~~q~s~~~~~~~fl~i~Wi~~~Lq~ 518 (617)
T PF15087_consen 451 KSCPPFDI-QLVA-----------DSSMSFDAELQKLLLEYTDAATALLFEILLVFQQGSLGLGSDKFLAISWIMRVLQS 518 (617)
T ss_pred ccCCcccc-cccc-----------ccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCchhHHHHHHHHhc
Confidence 111 1000 011111 445544443333332 111 234555666777764333
Q ss_pred HHHHHHHHhcchhhHhhhhhcc-------CCC---chhhhhHHHHHHH---HHh--hChHHHHHHHHhcHHHHHHHhhhh
Q 021148 154 HQSVARYVLESQHMKKFFDYIQ-------LPN---FDIAADAAATFKE---LLT--RHKSTVAEFLSKNYDWFFAEYNSK 218 (316)
Q Consensus 154 ~e~la~~iL~~~~f~~fF~yv~-------~~~---FdiasDAf~Tfke---lLt--~Hk~lvaefl~~Nyd~Ff~~yn~~ 218 (316)
|. ..-.|..|+- .+. +=-.++|---|+- |++ .|.+-.|+|+.+||.+=|..|- +
T Consensus 519 ~p----------~~~~Fv~~~v~q~v~~LS~s~~~~LSp~qaVLlyQq~~iL~~cLq~s~~la~~ir~~yrEEFRYfI-~ 587 (617)
T PF15087_consen 519 HP----------PLLSFVGRIVKQVVKVLSASQHEPLSPSQAVLLYQQFYILLSCLQYSKQLAEHIRNNYREEFRYFI-K 587 (617)
T ss_pred CC----------cHHHHHHHHHHHHHHHhcccccccCChhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhheeeee-c
Confidence 32 3334444432 111 2223455444433 333 5777899999999988665442 3
Q ss_pred h--cc---CCCceehhchhhHHHHHh
Q 021148 219 L--LE---SSNYITRRQAVKLLGDIL 239 (316)
Q Consensus 219 L--L~---S~NYVTkRQSLKLLgelL 239 (316)
. ++ =+-|=..+..++|++|+|
T Consensus 588 ~p~lekKLP~~YPItqpT~~Li~evl 613 (617)
T PF15087_consen 588 MPCLEKKLPPCYPITQPTLQLIHEVL 613 (617)
T ss_pred chhhHhhCCCCCCCchHHHHHHHHHH
Confidence 3 22 256888889999999987
No 32
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=28.50 E-value=5.4e+02 Score=25.41 Aligned_cols=146 Identities=11% Similarity=0.179 Sum_probs=74.7
Q ss_pred hhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhcC--Cch-hhHhHHHHH----HHHHH-HHHHHHHHhcchh
Q 021148 95 ARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYE--NTD-MALHYGAML----RECIR-HQSVARYVLESQH 166 (316)
Q Consensus 95 ~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY~--~~d-ial~~G~mL----REcir-~e~la~~iL~~~~ 166 (316)
+|+|...-+..+..+...+..+--.-|..+-.++.-+++-|+ +++ ..+.-|.++ |-++. .+. ....
T Consensus 111 t~~Dli~FL~~~i~~~~~~k~~~Y~~LVk~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~------~l~a 184 (292)
T PF13929_consen 111 TKEDLISFLKLVIINLSSNKSFNYWDLVKRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENT------KLNA 184 (292)
T ss_pred cHHHHHHHHHHHHhccccccchHHHHHHHhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhcccc------chhh
Confidence 467777777776665555544332334555555666666777 665 222223322 22222 111 2235
Q ss_pred hHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhchhhHHHHHhccCCcHH
Q 021148 167 MKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSV 246 (316)
Q Consensus 167 f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQSLKLLgelLLdr~N~~ 246 (316)
+|.+.+|+. +.|+ .+..-.+...++. +-++ .++|+++|+-.. +.+....|-.---==...=+++.+--...
T Consensus 185 lYEvV~~l~-~t~~-~~l~~~vi~~Il~----~L~~--~~dW~kl~~fW~-~~~~~~~~~~D~rpW~~FI~li~~sgD~~ 255 (292)
T PF13929_consen 185 LYEVVDFLV-STFS-KSLTRNVIISILE----ILAE--SRDWNKLFQFWE-QCIPNSVPGNDPRPWAEFIKLIVESGDQE 255 (292)
T ss_pred HHHHHHHHH-hccc-cCCChhHHHHHHH----HHHh--cccHHHHHHHHH-HhcccCCCCCCCchHHHHHHHHHHcCCHH
Confidence 889999885 4444 2222222222221 1111 368999998886 66555444332122223334455666677
Q ss_pred HHHHhhcCh
Q 021148 247 VMTRYVSSR 255 (316)
Q Consensus 247 vM~rYIs~~ 255 (316)
+|.+-|++.
T Consensus 256 ~~~kiI~~G 264 (292)
T PF13929_consen 256 VMRKIIDDG 264 (292)
T ss_pred HHHHHhhCC
Confidence 777777664
No 33
>PF14680 FANCI_HD2: FANCI helical domain 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=28.33 E-value=54 Score=30.87 Aligned_cols=46 Identities=20% Similarity=0.470 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHH---HHHHhcHHHHHH
Q 021148 145 GAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVA---EFLSKNYDWFFA 213 (316)
Q Consensus 145 G~mLREcir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lva---efl~~Nyd~Ff~ 213 (316)
=.+||-|+-++.-.|.+||.. |-+++++.+.++. ++|..|+..||+
T Consensus 36 lg~LRRCL~QQa~VR~~LY~g-----------------------l~~~v~~n~~l~~~iLd~L~~hf~~y~~ 84 (234)
T PF14680_consen 36 LGILRRCLTQQADVRLMLYEG-----------------------LYDVVTRNPQLAPHILDMLLSHFKQYYE 84 (234)
T ss_dssp HHHHHGGGGS-HHHHHHHHHH-----------------------HHHHHHHSGGGHHHHHHHHHHHHHHHB-
T ss_pred HHHHHHHhcChHHHHHHHHHH-----------------------HHHHHHcCcccHHHHHHHHHHHHHHHhC
Confidence 357899999999999999884 3366778887766 666688887776
No 34
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=27.20 E-value=2.7e+02 Score=30.29 Aligned_cols=99 Identities=19% Similarity=0.291 Sum_probs=65.8
Q ss_pred hhHhhhhhccCCCchhhhhHHHHHHHHHhhCh------HHHHHHHHh---------------cHHHHHHHhhhhhccCCC
Q 021148 166 HMKKFFDYIQLPNFDIAADAAATFKELLTRHK------STVAEFLSK---------------NYDWFFAEYNSKLLESSN 224 (316)
Q Consensus 166 ~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk------~lvaefl~~---------------Nyd~Ff~~yn~~LL~S~N 224 (316)
.+..+|.+++.+.=.+.=|+=+-++|+|+.-+ .+|--|++. |--.||...| ..+..+.
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~s~~~~~il~~~~~P~~K~~~~~l~-~~~~~~~ 83 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLSTNSQRALEILVGVQEPHDKHLFDKLN-DYFVKPS 83 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCcHHHHHHHHhcCCccHHHHHHHHH-HHHcCch
Confidence 46778888888888888889999999998764 233344442 2256999998 6777665
Q ss_pred ceehhchhhHHHHHhccCCcHHHHHHhhcChhhHHHHHHHhccCC
Q 021148 225 YITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 225 YVTkRQSLKLLgelLLdr~N~~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
+|-++|-|||.++ |..-.-.-+-+..+=.--+.=.|+.|.+
T Consensus 84 --~Rl~~L~Ll~~~v--~~qp~~l~~i~~t~Lf~~LLk~L~~D~~ 124 (668)
T PF04388_consen 84 --YRLQALTLLGHFV--RSQPPWLYKILQTPLFKSLLKCLQFDTS 124 (668)
T ss_pred --hHHHHHHHHHHHH--hcCCchHHHHhcChhHHHHHHHHhhccc
Confidence 5889999999999 4443333333444433333334445555
No 35
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=26.68 E-value=6.1e+02 Score=29.90 Aligned_cols=96 Identities=18% Similarity=0.170 Sum_probs=45.7
Q ss_pred CCCCChHHHHHHHHHHHHHhhcCCCchhhhhHHHHHH-HHHHHHHHHhhh-ccCCCCCCcHHHHHHHHHHHHhhchHHHH
Q 021148 7 SKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAE-LCKNIRELKSIL-YGNSESEPVSEACAQLTAEFFRENTLRLL 84 (316)
Q Consensus 7 ~~~ktP~elVr~l~e~l~~L~~~~~~~~~K~~~k~ee-isK~L~~mK~il-~G~~e~ep~~e~~~qLa~ei~~~dll~~L 84 (316)
+++|-|.|++-.|.+. .+++.. .++=++++ +.++-.++.++- +|.+ --|| +- +=|-++++....
T Consensus 862 ~SqkDPkEyLP~L~el-~~m~~~------~rkF~ID~~L~ry~~AL~hLs~~~~~---~~~e-~~---n~I~kh~Ly~~a 927 (1265)
T KOG1920|consen 862 KSQKDPKEYLPFLNEL-KKMETL------LRKFKIDDYLKRYEDALSHLSECGET---YFPE-CK---NYIKKHGLYDEA 927 (1265)
T ss_pred HhccChHHHHHHHHHH-hhchhh------hhheeHHHHHHHHHHHHHHHHHcCcc---ccHH-HH---HHHHhcccchhh
Confidence 5688899998877763 333321 11112333 555555555552 3311 1111 11 112223332221
Q ss_pred HhcCCCCChhhhhhHHHHHHHHhhhccCCCccc
Q 021148 85 ITCLPKLNLEARKDATQVVANLQRQQVHSKLIA 117 (316)
Q Consensus 85 i~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~ 117 (316)
.-|-+=+-|.+|++..+|+..||+..-.+.-+
T Consensus 928 -L~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aa 959 (1265)
T KOG1920|consen 928 -LALYKPDSEKQKVIYEAYADHLREELMSDEAA 959 (1265)
T ss_pred -hheeccCHHHHHHHHHHHHHHHHHhccccHHH
Confidence 12334456677777777777776654444333
No 36
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=26.49 E-value=7.2e+02 Score=25.53 Aligned_cols=137 Identities=14% Similarity=0.223 Sum_probs=77.0
Q ss_pred hHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhcCCchhhHhHHHHHHHHHHHHHHHHHHhcchhhHhhhhhccCC
Q 021148 98 DATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLP 177 (316)
Q Consensus 98 dv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY~~~dial~~G~mLREcir~e~la~~iL~~~~f~~fF~yv~~~ 177 (316)
-+--+|..+|...+..-. -|. -+|+..|+.-+..+.+.-.|..++- .|-+|.+|.....+
T Consensus 117 ~L~P~f~~ILq~dV~EF~---PYv---fQIla~Lle~~~~~~~p~~y~~L~~-----------~Ll~p~lWe~~gni--- 176 (435)
T PF03378_consen 117 ALFPPFQEILQQDVQEFI---PYV---FQILAQLLELRPSSPLPDAYKQLFP-----------PLLSPALWERRGNI--- 176 (435)
T ss_dssp HHHHHHHHHHHTT-TTTH---HHH---HHHHHHHHHHSS--S--TTTGGGHH-----------HHTSGGGGGSTTTH---
T ss_pred HHHHHHHHHHHHHHHHHH---HHH---HHHHHHHHHcCCCCCCcHHHHHHHH-----------HHcCcchhccCCCc---
Confidence 456677777777765432 233 3577777776664454444443333 33366778644433
Q ss_pred CchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhchhhHHHHHhccCCcHHHHHHhhcChhh
Q 021148 178 NFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSREN 257 (316)
Q Consensus 178 ~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQSLKLLgelLLdr~N~~vM~rYIs~~eN 257 (316)
-..-.-++..+.+++.-+.+ .++....++-+. +|++|.. +--++..||..++..= -.+.+..|+. .=
T Consensus 177 -----PalvrLL~a~i~k~~~~i~~--~~~l~~iLgvFQ-kLi~sk~--~D~~gF~LL~~iv~~~-p~~~l~~yl~--~I 243 (435)
T PF03378_consen 177 -----PALVRLLQAYIKKDPSFIVA--NNQLEPILGVFQ-KLIASKA--NDHYGFDLLESIVENL-PPEALEPYLK--QI 243 (435)
T ss_dssp -----HHHHHHHHHHHHHHGGG------S-CHHHHHHHH-HHHT-TT--CHHHHHHHHHHHHHHS--HHHHGGGHH--HH
T ss_pred -----CcHHHHHHHHHHhCchhhcc--hhhHHHHHHHHH-HHHCCCC--cchHHHHHHHHHHHHC-CHHHHHHHHH--HH
Confidence 22233455556666654422 356678888996 9999987 5678999999988653 3556777773 34
Q ss_pred HHHHHHHhcc
Q 021148 258 LRILMNLLRV 267 (316)
Q Consensus 258 LKl~M~LL~d 267 (316)
+.+++.=|..
T Consensus 244 ~~lll~RLq~ 253 (435)
T PF03378_consen 244 FTLLLTRLQS 253 (435)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 4555555554
No 37
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.17 E-value=7.6e+02 Score=26.30 Aligned_cols=145 Identities=16% Similarity=0.219 Sum_probs=90.8
Q ss_pred HHHHHHHhhchHHHHHhcCCCCChh-hhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhcCC------chhhH
Q 021148 70 QLTAEFFRENTLRLLITCLPKLNLE-ARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYEN------TDMAL 142 (316)
Q Consensus 70 qLa~ei~~~dll~~Li~~L~~L~fE-~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY~~------~dial 142 (316)
+.+|++++.+.|..|...|..-+=+ -||.++=+.+|+-. |+ ...++++... .++..|+++++. .|.|-
T Consensus 312 ~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA---G~-~~qiqaVida-~l~p~Li~~l~~~ef~~rKEAaw 386 (514)
T KOG0166|consen 312 EQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA---GN-QEQIQAVIDA-NLIPVLINLLQTAEFDIRKEAAW 386 (514)
T ss_pred HHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc---CC-HHHHHHHHHc-ccHHHHHHHHhccchHHHHHHHH
Confidence 6789999999999988888877777 47778888888876 32 2346777643 455555555543 35555
Q ss_pred hHHHHHHHHHHHHHHHHHHhcchhhHhhhhhccCCCchhhh---hHHHHHHHHHhhCh----HHHHHHHHhcHHHHHHHh
Q 021148 143 HYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAA---DAAATFKELLTRHK----STVAEFLSKNYDWFFAEY 215 (316)
Q Consensus 143 ~~G~mLREcir~e~la~~iL~~~~f~~fF~yv~~~~Fdias---DAf~TfkelLt~Hk----~lvaefl~~Nyd~Ff~~y 215 (316)
..++..-.+. ...-+||.+.+++.-|-+++..+.=++.. ||+.++...--..+ ..++.+++...- -++.
T Consensus 387 aIsN~ts~g~--~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~gg--ldki 462 (514)
T KOG0166|consen 387 AISNLTSSGT--PEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGG--LDKI 462 (514)
T ss_pred HHHhhcccCC--HHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccC--hhHH
Confidence 5666655555 44457788888888888877766666655 44444443332222 556666664311 2233
Q ss_pred hhhhccCCC
Q 021148 216 NSKLLESSN 224 (316)
Q Consensus 216 n~~LL~S~N 224 (316)
. .|=.|+|
T Consensus 463 E-~LQ~hen 470 (514)
T KOG0166|consen 463 E-NLQSHEN 470 (514)
T ss_pred H-Hhhcccc
Confidence 2 4545666
No 38
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=24.85 E-value=58 Score=29.24 Aligned_cols=53 Identities=23% Similarity=0.267 Sum_probs=39.3
Q ss_pred cCCCceehhchhhHHHHHhccCCcHHHHHHhh--cChhhHHHHHHHhccCC--CCcce
Q 021148 221 ESSNYITRRQAVKLLGDILLDRSNSVVMTRYV--SSRENLRILMNLLRVRY--FPRMH 274 (316)
Q Consensus 221 ~S~NYVTkRQSLKLLgelLLdr~N~~vM~rYI--s~~eNLKl~M~LL~d~s--~EAFH 274 (316)
.+..++++..+++|||.++ .=-|...+..-+ +|++-=+..-..|+..- |+|||
T Consensus 73 ~~~~~Is~~~Av~LLGtM~-GGYNV~~LI~~L~~~d~~lA~~Aa~aLk~TlLvyDaf~ 129 (154)
T PF11791_consen 73 ISSPLISPAEAVELLGTML-GGYNVQPLIDLLKSDDEELAEEAAEALKNTLLVYDAFN 129 (154)
T ss_dssp S-BTTB-HHHHHHHHTTS--SSTTHHHHHHGG--G-TTTHHHHHHHHHT--TTCCHHH
T ss_pred ccCCCcCHHHHHHHHhhcc-CCCcHHHHHHHHcCCcHHHHHHHHHHHHhhHHHHhhHH
Confidence 3567999999999999987 556888888888 77777777778887777 89987
No 39
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=24.71 E-value=3.4e+02 Score=25.45 Aligned_cols=127 Identities=17% Similarity=0.201 Sum_probs=61.2
Q ss_pred CCCCCCChHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhchHHHH
Q 021148 5 FKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLL 84 (316)
Q Consensus 5 F~~~~ktP~elVr~l~e~l~~L~~~~~~~~~K~~~k~eeisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dll~~L 84 (316)
|+...-+-.+.++.+.+.+.. |.. .+|+...+..++....|.+. ++.+-.+.-+.+.++..
T Consensus 3 y~~e~~P~~~~a~~l~~~ir~----------k~~--~eei~~~l~~i~~~~~~~~~-~~~~~~i~v~~q~ll~~------ 63 (253)
T PF09090_consen 3 YENESLPFHALAQKLLDLIRK----------KAP--PEEISELLEEIEEPAEEHGS-DFDKFVIDVFVQCLLHI------ 63 (253)
T ss_dssp TS-TTSTTHHHHHHHHHHHHT----------T----HHHHHHHHTTS-------------HHHHHHHHHHHHHH------
T ss_pred CCCCCCccHHHHHHHHHHHHc----------CCC--HHHHHHHHHhcccccccccc-chhhHHHHHHHHHHHHh------
Confidence 333333345677888777752 111 37888888888888887766 66665666666666543
Q ss_pred HhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhh-----hcChhHHHHHHHhcCC-chh-hHhHHHHHHH-HHHHHH
Q 021148 85 ITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYL-----EANIDLLDILIAGYEN-TDM-ALHYGAMLRE-CIRHQS 156 (316)
Q Consensus 85 i~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl-----~~~peil~~Ll~gY~~-~di-al~~G~mLRE-cir~e~ 156 (316)
+.|...+.++.+=|+.. ....+ ..+-.||+.+.+.+.+ |.+ .+.+-.||+- -+.-..
T Consensus 64 ----------GSkS~SH~~~~lery~~-----~Lk~l~~~~~~~q~~il~~v~~~W~~~~q~~~li~dkll~~~ii~~~~ 128 (253)
T PF09090_consen 64 ----------GSKSFSHVLSALERYKE-----VLKELEAESEEAQFWILDAVFRFWKNNPQMGFLIIDKLLNYGIISPSA 128 (253)
T ss_dssp ----------TTTSHHHHHHHHHHTHH-----HHHHH-TSSHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTTSS-HHH
T ss_pred ----------cCchHHHHHHHHHHHHH-----HHHHhccCChHHHHHHHHHHHHHHhcCCceehHHHHHHHhcCCCCHHH
Confidence 46777777777666542 12223 1234456666655542 332 2333333332 333455
Q ss_pred HHHHHhcch
Q 021148 157 VARYVLESQ 165 (316)
Q Consensus 157 la~~iL~~~ 165 (316)
+++.++.++
T Consensus 129 Vv~w~f~~~ 137 (253)
T PF09090_consen 129 VVNWVFSPE 137 (253)
T ss_dssp HHHHHTSGG
T ss_pred HHHHHcCcc
Confidence 666666554
No 40
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=23.48 E-value=1e+02 Score=22.75 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=22.6
Q ss_pred HHHHHhhhhhccCCCceehhchhhHHHHH
Q 021148 210 WFFAEYNSKLLESSNYITRRQAVKLLGDI 238 (316)
Q Consensus 210 ~Ff~~yn~~LL~S~NYVTkRQSLKLLgel 238 (316)
+....+- .++.++|..+|++++.-||.+
T Consensus 31 ~~~~~L~-~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 31 EAIPALI-ELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHH-HHHTSSSHHHHHHHHHHHHCC
T ss_pred hHHHHHH-HHHcCCCHHHHHHHHHHHHHh
Confidence 3455553 678999999999999999976
No 41
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=22.70 E-value=1.9e+02 Score=32.27 Aligned_cols=84 Identities=30% Similarity=0.407 Sum_probs=57.3
Q ss_pred hccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhch-hhHHHHHhccCCcHH---HH
Q 021148 173 YIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQA-VKLLGDILLDRSNSV---VM 248 (316)
Q Consensus 173 yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQS-LKLLgelLLdr~N~~---vM 248 (316)
+++..+|++ +|-.+..+++|... | -|||.- -| .-|.+.+=--|+||= +..|+|+|---+|-- +|
T Consensus 75 ~~q~~sf~l-~~~~~~~~~~lq~a------~--ln~d~~--t~-all~~~sln~t~~~l~~pvl~~~i~~s~ngv~di~~ 142 (1117)
T COG5108 75 IIQRGSFEL-TDVLSNAKELLQQA------R--LNGDSL--TY-ALLCQASLNPTQRQLGLPVLHELIHRSANGVIDILM 142 (1117)
T ss_pred HHhcCCccH-HHHHHHHHHHHHHh------h--cCCcch--HH-HHHHHhhcChHhHHhccHHHHHHHHhhhhhHHHHHh
Confidence 568889998 78888888887643 2 355542 23 244443333788885 567888887555542 35
Q ss_pred HHhhcChhhHHHHHHHhccC
Q 021148 249 TRYVSSRENLRILMNLLRVR 268 (316)
Q Consensus 249 ~rYIs~~eNLKl~M~LL~d~ 268 (316)
-.=|=+|+.+|++|+-|.=+
T Consensus 143 ~~~v~s~~ev~limd~l~i~ 162 (1117)
T COG5108 143 HESVFSPEEVKLIMDQLNIP 162 (1117)
T ss_pred hhccCCHHHHHHHHHhcCCC
Confidence 56678999999999988643
No 42
>PTZ00464 SNF-7-like protein; Provisional
Probab=22.67 E-value=4e+02 Score=24.79 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=18.9
Q ss_pred CCCCCCCC----CCChHHHHHHHHHHHHHhh
Q 021148 1 MKGLFKSK----PRTPVDIVRQTRDLIIYAN 27 (316)
Q Consensus 1 M~~lF~~~----~ktP~elVr~l~e~l~~L~ 27 (316)
|..|||++ +.|+.|-++.+++.+..|+
T Consensus 1 M~rlFG~~k~~p~~t~~d~~~~l~~r~~~l~ 31 (211)
T PTZ00464 1 MNRLFGKKNKTPKPTLEDASKRIGGRSEVVD 31 (211)
T ss_pred CccccCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 77899754 2367777777777777665
No 43
>PHA02800 hypothetical protein; Provisional
Probab=22.51 E-value=4.6e+02 Score=23.70 Aligned_cols=84 Identities=14% Similarity=0.167 Sum_probs=47.9
Q ss_pred HHhcCCchhhHhHHHHHHHHHHHHHHHHHHhcchhh---Hhhhhhc---cCCCchh----hhhHHHHHHHHHhhChHHHH
Q 021148 132 IAGYENTDMALHYGAMLRECIRHQSVARYVLESQHM---KKFFDYI---QLPNFDI----AADAAATFKELLTRHKSTVA 201 (316)
Q Consensus 132 l~gY~~~dial~~G~mLREcir~e~la~~iL~~~~f---~~fF~yv---~~~~Fdi----asDAf~TfkelLt~Hk~lva 201 (316)
-+|++++ +-=.||.+..|..+++.+|+.-.....+ .+.+.-. ..+.-+| --|-....|+++.---.++.
T Consensus 44 WR~ng~~-~~~~cGKIFKELmKyD~lAkk~~~~~d~~~~KNM~l~~Dk~~syvLni~e~~~~D~i~~~Ke~IG~~AILse 122 (161)
T PHA02800 44 WRFNGGK-VDENTGKIFKEFFKYDTLAKWRFSKRDFEQCKNMLLENDKNTSYVLDVPKPEKNDPLLNLKELIGFLAILSE 122 (161)
T ss_pred hhcCCCh-hhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHhhccccchhccchhhccccHHHHHHHHHHHHHHHHH
Confidence 4555444 5568999999999999999977533333 2222111 1111111 12556667777765444433
Q ss_pred HH-HHhcHHHHHHHhh
Q 021148 202 EF-LSKNYDWFFAEYN 216 (316)
Q Consensus 202 ef-l~~Nyd~Ff~~yn 216 (316)
|. +..||+..|...|
T Consensus 123 eIk~D~~F~~lFn~l~ 138 (161)
T PHA02800 123 EIKKDTKFFALFNIMN 138 (161)
T ss_pred HhhhhhhHHHHHHHHH
Confidence 44 4566666666665
No 44
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=21.70 E-value=2.4e+02 Score=26.88 Aligned_cols=82 Identities=26% Similarity=0.393 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHhhChHHHHHHHHh-------cHHHHHHHhhhhhccCCCceehhchhhHHHHHhccCCcHH------HHH
Q 021148 183 ADAAATFKELLTRHKSTVAEFLSK-------NYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSV------VMT 249 (316)
Q Consensus 183 sDAf~TfkelLt~Hk~lvaefl~~-------Nyd~Ff~~yn~~LL~S~NYVTkRQSLKLLgelLLdr~N~~------vM~ 249 (316)
-=....+-|++.-++..+.-|+.. .|..|+ +++++++-.++.+|.++|+.++..+.... ++.
T Consensus 75 ~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl-----~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~ 149 (312)
T PF03224_consen 75 QYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFL-----KLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALP 149 (312)
T ss_dssp HHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHH-----HH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHH-----HHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHH
Confidence 334567778888888666655551 345555 47888899999999999999997755432 233
Q ss_pred ---HhhcC----hhh------HHHHHHHhccCC
Q 021148 250 ---RYVSS----REN------LRILMNLLRVRY 269 (316)
Q Consensus 250 ---rYIs~----~eN------LKl~M~LL~d~s 269 (316)
.|+.+ .++ +...++||+.+.
T Consensus 150 ~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~ 182 (312)
T PF03224_consen 150 KLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE 182 (312)
T ss_dssp HHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH
T ss_pred HHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch
Confidence 33332 333 677788887776
No 45
>PF06393 BID: BH3 interacting domain (BID); InterPro: IPR010479 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. Bcl-2 proteins are central regulators of caspase activation, and play a key role in cell death by regulating the integrity of the mitochondrial and endoplasmic reticulum (ER) membranes []. At least 20 Bcl-2 proteins have been reported in mammals, and several others have been identified in viruses. Bcl-2 family proteins fall roughly into three subtypes, which either promote cell survival (anti-apoptotic) or trigger cell death (pro-apoptotic). All members contain at least one of four conserved motifs, termed Bcl-2 Homology (BH) domains. Bcl-2 subfamily proteins, which contain at least BH1 and BH2, promote cell survival by inhibiting the adapters needed for the activation of caspases. Pro-apoptotic members potentially exert their effects by displacing the adapters from the pro-survival proteins; these proteins belong either to the Bax subfamily, which contain BH1-BH3, or to the BH3 subfamily, which mostly only feature BH3 []. Thus, the balance between antagonistic family members is believed to play a role in determining cell fate. Members of the wider Bcl-2 family, which also includes Bcl-x, Bcl-w and Mcl-1, are described by their similarity to Bcl-2 protein, a member of the pro-survival Bcl-2 subfamily []. Full-length Bcl-2 proteins feature all four BH domains, seven alpha-helices, and a C-terminal hydrophobic motif that targets the protein to the outer mitochondrial membrane, ER and nuclear envelope. BID is a member of the Bcl-2 superfamily of proteins that are key regulators of programmed cell death, hence this family is related to the Apoptosis regulator Bcl-2 protein BH domain. BID is a pro-apoptotic member of the Bcl-2 superfamily and as such posses the ability to target intracellular membranes and contains the BH3 death domain. The activity of BID is regulated by a Caspase 8-mediated cleavage event, exposing the BH3 domain and significantly changing the surface charge and hydrophobicity, which causes a change of cellular localisation [].; GO: 0043065 positive regulation of apoptosis, 0005737 cytoplasm; PDB: 2BID_A 1ZY3_B 2KBW_B 1DDB_A 2VOI_B.
Probab=21.60 E-value=1.8e+02 Score=27.16 Aligned_cols=72 Identities=14% Similarity=0.263 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhch------------HHHHHhcCCCCChhhhhhHHHHHHHH
Q 021148 39 DKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENT------------LRLLITCLPKLNLEARKDATQVVANL 106 (316)
Q Consensus 39 ~k~eeisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dl------------l~~Li~~L~~L~fE~RKdv~~If~~l 106 (316)
+-+.+|+..|.+|=.-+-+ +-.|+.|..||+.+-+.++ +..+++..| .|+| +-.+..+++-+
T Consensus 83 Eiir~IA~qLAqIGD~me~----sI~p~lV~~La~qf~n~~LseEdrr~~LAaavq~lmqt~P-~Dme-~Eka~L~ltML 156 (196)
T PF06393_consen 83 EIIRRIARQLAQIGDRMER----SIQPSLVNNLAQQFRNSNLSEEDRRRCLAAAVQQLMQTVP-KDME-QEKAMLVLTML 156 (196)
T ss_dssp HCHHHHHHHHHHHHHHHHC----C-TTTTHHHHHHHHHSCCCCCCCCCHHHHHHHHHHHCCS--STCH-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHCC-ccHH-HHHHHHHHHHH
Confidence 3345688888888777754 3567789999999987743 455666553 4666 34567788888
Q ss_pred hhhccCCCcc
Q 021148 107 QRQQVHSKLI 116 (316)
Q Consensus 107 lr~~~~~r~p 116 (316)
|-.++-+..|
T Consensus 157 LaKKVa~htP 166 (196)
T PF06393_consen 157 LAKKVADHTP 166 (196)
T ss_dssp HHHHHHHH-T
T ss_pred HHHHHHHhCc
Confidence 8888766655
No 46
>PRK15201 fimbriae regulatory protein FimW; Provisional
Probab=21.19 E-value=76 Score=29.51 Aligned_cols=86 Identities=19% Similarity=0.353 Sum_probs=57.1
Q ss_pred HHHhhhccCCCCCCcH-HHHHHHHHHHHhhchHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCC---Cccchhhhh-cC
Q 021148 50 ELKSILYGNSESEPVS-EACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHS---KLIASDYLE-AN 124 (316)
Q Consensus 50 ~mK~il~G~~e~ep~~-e~~~qLa~ei~~~dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~---r~p~v~Yl~-~~ 124 (316)
|.+.|++...|++--- .-|.-+---||++|=+..+ ++|.+-.++--.||+++.. -..+.+-|- +.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~iyr~d~v~~i----------~~k~~~il~~~al~~~~~~~~~~~~~~~~LSpRE 138 (198)
T PRK15201 69 QLRVIICNKCDKEKLMFRPCLYMLPHIYREDDVEEI----------TRKMILILHKRALRHSVPSGICHYCTTRHFSVTE 138 (198)
T ss_pred eeEEEEeccccchhhhhchhHhhcchhhccccHHHH----------HHHHHHHHHHHHHHhhCCchhccccCCCCCCHHH
Confidence 4566777666655321 1144444567777766554 4778888888899988755 333334454 34
Q ss_pred hhHHHHHHHhcCCchhhHhHH
Q 021148 125 IDLLDILIAGYENTDMALHYG 145 (316)
Q Consensus 125 peil~~Ll~gY~~~dial~~G 145 (316)
-+|+..+..|+.+.+||-..|
T Consensus 139 rEVLrLLAqGkTnKEIAe~L~ 159 (198)
T PRK15201 139 RHLLKLIASGYHLSETAALLS 159 (198)
T ss_pred HHHHHHHHCCCCHHHHHHHhC
Confidence 799999999999999986554
No 47
>COG0255 RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]
Probab=20.65 E-value=1.4e+02 Score=23.25 Aligned_cols=49 Identities=10% Similarity=0.184 Sum_probs=29.9
Q ss_pred CCCChHHHHHHHHHHHHHhh---cCCCchhhhhHHHHHHHHHHHHHHHhhhc
Q 021148 8 KPRTPVDIVRQTRDLIIYAN---RSADVRESKREDKMAELCKNIRELKSILY 56 (316)
Q Consensus 8 ~~ktP~elVr~l~e~l~~L~---~~~~~~~~K~~~k~eeisK~L~~mK~il~ 56 (316)
+.+|+.|+...+.|.-..|- .....+...++.++-++-|.+.+++.++.
T Consensus 9 R~~s~eeL~~~l~eLK~ELf~LR~q~a~g~l~n~~~ir~vRr~IARi~Tv~~ 60 (69)
T COG0255 9 REKSVEELEEELRELKKELFNLRFQLATGQLENPHRIREVRRDIARILTVLR 60 (69)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 45789999888877644332 11001112234456788888888888874
No 48
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.58 E-value=5.3e+02 Score=24.40 Aligned_cols=66 Identities=26% Similarity=0.418 Sum_probs=36.4
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhcCCCchhhhhHHH-HH-HHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhh
Q 021148 1 MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDK-MA-ELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRE 78 (316)
Q Consensus 1 M~~lF~~~~ktP~elVr~l~e~l~~L~~~~~~~~~K~~~k-~e-eisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~ 78 (316)
|. +|+++ +||+|+.|.-+-.|.+--. +-.++.. ++ +=-|-+..||..-- .-+-.++.-+|..+.+.
T Consensus 1 m~-lFgk~-~tp~e~Lr~nqRal~~a~R-----eleRer~~le~qeKklvaeIKk~AK-----~gq~~A~KimAkdLvRt 68 (224)
T KOG3230|consen 1 MD-LFGKK-KTPAELLRENQRALNKATR-----ELERERQKLELQEKKLVAEIKKTAK-----QGQMDAVKIMAKDLVRT 68 (224)
T ss_pred CC-cccCC-CCHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH-----cccHHHHHHHHHHHHHH
Confidence 45 88887 8999999988777776332 2112211 11 12234556665432 23344566666665553
No 49
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=20.44 E-value=5e+02 Score=26.19 Aligned_cols=46 Identities=15% Similarity=0.105 Sum_probs=33.3
Q ss_pred CCCcHHHHHHHHHHHHhhchHHHHHhcCCCCChhhhhhHHHHHHHH
Q 021148 61 SEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANL 106 (316)
Q Consensus 61 ~ep~~e~~~qLa~ei~~~dll~~Li~~L~~L~fE~RKdv~~If~~l 106 (316)
-.|++...++||+.-|+..-+..++..|.+=-=++.|.-.+||..|
T Consensus 35 wGPs~~lm~eIA~~ty~~~e~~eIm~vi~kRl~d~gknWR~VyKaL 80 (336)
T KOG2056|consen 35 WGPSGTLMAEIAQATYNFVEYQEIMDVLWKRLNDSGKNWRHVYKAL 80 (336)
T ss_pred CCCchHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 3688999999999999998777777666553233456666666655
Done!