Query 021148
Match_columns 316
No_of_seqs 123 out of 221
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 13:26:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021148.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021148hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1upk_A MO25 protein; transfera 100.0 7E-117 2E-121 849.2 20.8 291 1-296 3-298 (341)
2 4hxt_A De novo protein OR329; 96.1 0.3 1E-05 41.1 15.8 186 72-269 37-225 (252)
3 4db8_A Armadillo-repeat protei 95.7 0.087 3E-06 45.1 10.9 185 73-269 48-235 (252)
4 4hxt_A De novo protein OR329; 95.3 0.43 1.5E-05 40.1 13.5 178 80-269 3-183 (252)
5 2jdq_A Importin alpha-1 subuni 94.5 1.9 6.7E-05 39.5 16.8 182 75-269 145-331 (450)
6 4db6_A Armadillo repeat protei 94.3 0.5 1.7E-05 39.2 11.4 159 72-239 47-208 (210)
7 4db6_A Armadillo repeat protei 93.7 1.2 4.1E-05 36.8 12.5 175 83-269 16-193 (210)
8 1wa5_B Importin alpha subunit; 93.4 3.5 0.00012 39.5 16.9 182 76-269 212-396 (530)
9 4db8_A Armadillo-repeat protei 93.1 2.2 7.5E-05 36.2 13.4 157 74-239 91-250 (252)
10 2jdq_A Importin alpha-1 subuni 90.8 3.3 0.00011 37.9 12.7 162 74-242 271-445 (450)
11 4b8j_A Importin subunit alpha- 90.1 5.1 0.00017 38.2 13.8 160 73-241 322-497 (528)
12 4b8j_A Importin subunit alpha- 88.8 17 0.00057 34.6 17.4 188 73-269 280-480 (528)
13 2z6g_A B-catenin; FULL-length, 87.9 19 0.00064 37.2 17.0 180 78-269 149-331 (780)
14 1wa5_B Importin alpha subunit; 87.8 3.3 0.00011 39.7 10.7 183 78-269 256-441 (530)
15 4fdd_A Transportin-1; heat rep 87.4 27 0.00093 35.5 18.1 170 82-269 93-269 (852)
16 1xqr_A HSPBP1 protein; armadil 86.4 20 0.00067 32.9 21.8 208 14-241 25-239 (296)
17 1jdh_A Beta-catenin; beta-cate 83.5 29 0.00099 32.4 14.8 180 78-269 16-198 (529)
18 3tpo_A Importin subunit alpha- 83.1 34 0.0012 33.0 16.5 179 79-269 251-433 (529)
19 2z6h_A Catenin beta-1, beta-ca 80.7 46 0.0016 32.8 15.8 182 76-269 11-195 (644)
20 3nmw_A APC variant protein; AR 78.2 15 0.0005 34.6 10.6 164 74-245 165-339 (354)
21 1u6g_C TIP120 protein, CAND1; 76.3 8.6 0.00029 41.0 9.3 148 80-241 49-205 (1230)
22 3tpo_A Importin subunit alpha- 75.0 61 0.0021 31.2 16.7 188 73-269 287-481 (529)
23 3nmz_A APC variant protein; pr 74.4 33 0.0011 33.5 12.3 162 74-243 281-453 (458)
24 4fdd_A Transportin-1; heat rep 73.8 19 0.00066 36.6 10.9 175 82-269 51-228 (852)
25 3ul1_B Importin subunit alpha- 72.8 69 0.0024 30.8 18.5 179 79-269 232-414 (510)
26 1qgr_A Protein (importin beta 72.1 53 0.0018 32.7 13.4 152 79-240 128-288 (876)
27 2z6g_A B-catenin; FULL-length, 71.6 62 0.0021 33.2 14.1 180 74-269 483-686 (780)
28 1jdh_A Beta-catenin; beta-cate 70.5 25 0.00087 32.8 10.1 177 77-267 141-319 (529)
29 2z6h_A Catenin beta-1, beta-ca 69.3 91 0.0031 30.7 17.3 179 75-269 348-550 (644)
30 3grl_A General vesicular trans 67.9 1.2E+02 0.0039 31.7 15.0 152 45-199 80-246 (651)
31 3now_A UNC-45 protein, SD10334 67.6 1.3E+02 0.0044 31.8 15.7 187 68-269 484-678 (810)
32 3ul1_B Importin subunit alpha- 67.0 92 0.0031 29.9 14.6 188 73-269 268-462 (510)
33 1qgr_A Protein (importin beta 63.8 1.2E+02 0.0041 30.1 14.6 173 80-269 218-421 (876)
34 3qml_C Protein SLS1, nucleotid 58.2 22 0.00076 33.8 7.1 52 78-134 70-122 (315)
35 2qk2_A LP04448P; mini spindles 58.0 85 0.0029 26.5 11.9 163 84-269 20-189 (242)
36 1upk_A MO25 protein; transfera 57.6 96 0.0033 29.8 11.4 140 70-212 155-303 (341)
37 4hat_C Exportin-1; heat repeat 57.4 57 0.002 35.1 11.0 81 136-216 816-905 (1023)
38 2qk2_A LP04448P; mini spindles 56.9 47 0.0016 28.2 8.5 151 90-259 68-223 (242)
39 1w9c_A CRM1 protein, exportin 56.7 1.3E+02 0.0046 28.4 14.4 169 80-254 74-274 (321)
40 2x19_B Importin-13; nuclear tr 56.1 1.8E+02 0.0062 29.7 16.2 125 125-253 725-859 (963)
41 1ibr_B P95, importin beta-1 su 55.7 33 0.0011 31.1 7.7 142 91-239 49-202 (462)
42 3eg5_B Protein diaphanous homo 54.7 1.1E+02 0.0037 29.1 11.5 102 9-140 65-176 (383)
43 3now_A UNC-45 protein, SD10334 53.4 1.4E+02 0.0049 31.5 13.0 188 72-269 529-721 (810)
44 1wa5_C Importin alpha RE-expor 52.9 2.2E+02 0.0074 29.6 14.5 102 91-197 49-155 (960)
45 2f31_A Diaphanous protein homo 52.6 1.2E+02 0.0041 26.5 10.6 38 98-140 73-110 (233)
46 2bnx_A Diaphanous protein homo 51.4 1E+02 0.0034 29.4 10.6 174 8-215 2-211 (386)
47 1ddb_A Protein (BID); apoptosi 50.8 11 0.00037 33.6 3.3 80 39-124 81-181 (195)
48 2bpt_A Importin beta-1 subunit 50.7 2E+02 0.0067 28.5 13.3 155 79-241 134-296 (861)
49 1xqr_A HSPBP1 protein; armadil 50.3 1.5E+02 0.0051 26.9 11.3 123 140-269 56-180 (296)
50 3gjx_A Exportin-1; transport, 44.7 83 0.0029 34.3 9.8 78 136-215 842-928 (1073)
51 1ibr_B P95, importin beta-1 su 44.0 1.8E+02 0.0061 26.1 15.3 148 124-280 126-287 (462)
52 1w63_A Adapter-related protein 42.6 2.6E+02 0.0089 27.6 14.4 42 173-215 187-228 (618)
53 2jqq_A Conserved oligomeric go 42.3 70 0.0024 28.6 7.2 64 12-77 74-138 (204)
54 2bpt_A Importin beta-1 subunit 41.5 2.7E+02 0.0093 27.5 17.4 173 80-269 225-424 (861)
55 2vgl_A Adaptor protein complex 41.1 1.9E+02 0.0065 28.9 11.2 80 17-101 11-96 (621)
56 1xm9_A Plakophilin 1; armadill 37.6 1.1E+02 0.0036 29.1 8.4 116 72-193 323-448 (457)
57 1xm9_A Plakophilin 1; armadill 36.4 1.3E+02 0.0044 28.5 8.7 116 125-246 5-122 (457)
58 1vdy_A Hypothetical protein (R 35.2 72 0.0025 26.7 5.9 89 61-152 25-121 (140)
59 2yru_A Steroid receptor RNA ac 33.6 88 0.003 25.4 6.0 42 40-81 37-78 (118)
60 3grl_A General vesicular trans 28.8 1E+02 0.0035 32.0 7.0 51 218-269 129-179 (651)
61 3dad_A FH1/FH2 domain-containi 27.8 4E+02 0.014 25.4 16.4 139 42-195 133-287 (339)
62 2qk1_A Protein STU2; STU2P, XM 25.1 3.1E+02 0.01 23.8 8.7 165 89-269 26-204 (249)
63 2vgl_B AP-2 complex subunit be 22.8 4.3E+02 0.015 25.7 10.0 137 80-243 50-192 (591)
64 3r1f_A ESX-1 secretion-associa 21.0 91 0.0031 25.2 4.0 97 8-108 25-129 (135)
No 1
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=100.00 E-value=7.2e-117 Score=849.23 Aligned_cols=291 Identities=41% Similarity=0.716 Sum_probs=267.2
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhcCCCchhhhhHHHH-HHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhc
Q 021148 1 MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKM-AELCKNIRELKSILYGNSESEPVSEACAQLTAEFFREN 79 (316)
Q Consensus 1 M~~lF~~~~ktP~elVr~l~e~l~~L~~~~~~~~~K~~~k~-eeisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~d 79 (316)
|+ ||++||||+|+||+++|+|.+|+.++ ++.+.++|+ |||+|+|++||.||||++|+||+||+|+|||+|+|++|
T Consensus 3 m~--F~~~~ktP~elVr~l~d~l~~l~~~~--~~~~~~~k~~ee~sK~l~~mK~iL~G~~e~ep~~e~~~qL~~ei~~~d 78 (341)
T 1upk_A 3 FP--FGKSHKSPADIVKNLKESMAVLEKQD--ISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSG 78 (341)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHC-----CTHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHS
T ss_pred CC--CCCCCCCHHHHHHHHHHHHHHHhccc--cccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhC
Confidence 56 99999999999999999999999643 234443454 89999999999999999999999999999999999999
Q ss_pred hHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhcCCchhhHhHHHHHHHHHHHHHHHH
Q 021148 80 TLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVAR 159 (316)
Q Consensus 80 ll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY~~~dial~~G~mLREcir~e~la~ 159 (316)
+|++||.+|+.||||+|||+++||++++||++|+++|+|+||++||||+++|++||++||+|++||+|||||+|||++|+
T Consensus 79 ll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~la~ 158 (341)
T 1upk_A 79 LLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAK 158 (341)
T ss_dssp HHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhchhhHHHHHh
Q 021148 160 YVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDIL 239 (316)
Q Consensus 160 ~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQSLKLLgelL 239 (316)
+||+|++||+||+|++.|+||||||||+|||||||+||++|||||++|||+||++|| +||+|+||||||||||||||||
T Consensus 159 ~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~-~Ll~S~NYVTkRQSlKLLgelL 237 (341)
T 1upk_A 159 IILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYE-KLLHSENYVTKRQSLKLLGELL 237 (341)
T ss_dssp HHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHH-HHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHH-HHhcCCcchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred ccCCcHHHHHHhhcChhhHHHHHHHhccCC----CCcceeeeeeeeccCCCCCCccccccc
Q 021148 240 LDRSNSVVMTRYVSSRENLRILMNLLRVRY----FPRMHVEDIFYLAYQKLQGTEPVTFDK 296 (316)
Q Consensus 240 Ldr~N~~vM~rYIs~~eNLKl~M~LL~d~s----~EAFHVFKvFVANP~K~~~~~~~~~~~ 296 (316)
|||+|++||++||+|++|||+||+||||+| ||||||||||||||||||+|..||.+.
T Consensus 238 ldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~N 298 (341)
T 1upk_A 238 LDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKN 298 (341)
T ss_dssp HSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHT
T ss_pred hCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHH
Confidence 999999999999999999999999999999 999999999999999999999999865
No 2
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.12 E-value=0.3 Score=41.13 Aligned_cols=186 Identities=12% Similarity=0.205 Sum_probs=136.4
Q ss_pred HHHHHhhchHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhc--CCchhhHhHHHHHH
Q 021148 72 TAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLR 149 (316)
Q Consensus 72 a~ei~~~dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY--~~~dial~~G~mLR 149 (316)
...+.+.+.+..|+..|..=+-+.|..+..+..++.....+ ..+.+. ....+..|+.-. +++++...+-..|.
T Consensus 37 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~----~~~~~~-~~~~i~~l~~ll~~~~~~v~~~a~~~L~ 111 (252)
T 4hxt_A 37 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE----AIKAIV-DAGGVEVLVKLLTSTDSEVQKEAARALA 111 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH----HHHHHH-HTTHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH----HHHHHH-HCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34556678899999999888888898888888888653221 223332 223344443333 45777778888888
Q ss_pred HHH-HHHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceeh
Q 021148 150 ECI-RHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITR 228 (316)
Q Consensus 150 Eci-r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTk 228 (316)
... ..+.....+...+.+..+.+.++.++-++...|..++..+-..++.....+.... .....- .++.+++.-++
T Consensus 112 ~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~L~-~ll~~~~~~v~ 187 (252)
T 4hxt_A 112 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAG---GVEVLV-KLLTSTDSEVQ 187 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHH-HHTTCSCHHHH
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCc---CHHHHH-HHHCCCCHHHH
Confidence 877 5677788888888888999999999999999999999998877766655665544 455553 78999999999
Q ss_pred hchhhHHHHHhccCCcHHHHHHhhcChhhHHHHHHHhccCC
Q 021148 229 RQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 229 RQSLKLLgelLLdr~N~~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
+.++..|+.+.. .+-. ..+++.+..-+..++.+|++++
T Consensus 188 ~~a~~~L~~l~~--~~~~-~~~~l~~~~~i~~L~~ll~~~~ 225 (252)
T 4hxt_A 188 KEAARALANIAS--GPTS-AIKAIVDAGGVEVLQKLLTSTD 225 (252)
T ss_dssp HHHHHHHHHHTT--SBHH-HHHHHHHTTHHHHHHHGGGCSC
T ss_pred HHHHHHHHHHHc--CCHH-HHHHHHHCCCHHHHHHHHCCCc
Confidence 999999999985 2333 3345556678888888888776
No 3
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=95.75 E-value=0.087 Score=45.09 Aligned_cols=185 Identities=14% Similarity=0.120 Sum_probs=130.7
Q ss_pred HHHHhhchHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhc--CCchhhHhHHHHHHH
Q 021148 73 AEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLRE 150 (316)
Q Consensus 73 ~ei~~~dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY--~~~dial~~G~mLRE 150 (316)
+.+...+.+..|+..|..=+-+.|..+..+..++.....+. .+.+.. ...+..|+.-- +++++--.+-..|+.
T Consensus 48 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~----~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~ 122 (252)
T 4db8_A 48 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ----IQAVID-AGALPALVQLLSSPNEQILQEALWALSN 122 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH----HHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH----HHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45667789999999998888888888888888886532211 222322 23444443333 356777777777877
Q ss_pred HHHHHHHH-HHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehh
Q 021148 151 CIRHQSVA-RYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRR 229 (316)
Q Consensus 151 cir~e~la-~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkR 229 (316)
....+... ..+...+.+..+.+.++.++-++...|..++..+-...+.........+ .....- .++.+++--+++
T Consensus 123 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~L~-~ll~~~~~~v~~ 198 (252)
T 4db8_A 123 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG---ALPALV-QLLSSPNEQILQ 198 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---CHHHHH-HGGGCSSHHHHH
T ss_pred hhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCC---CHHHHH-HHHCCCCHHHHH
Confidence 77766665 7788888888888999999999999999999998876665555555443 344453 788899999999
Q ss_pred chhhHHHHHhccCCcHHHHHHhhcChhhHHHHHHHhccCC
Q 021148 230 QAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 230 QSLKLLgelLLdr~N~~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
.++..|+.+.. .+-... ..+-+..-+..++.+|++.+
T Consensus 199 ~a~~~L~~l~~--~~~~~~-~~~~~~g~i~~L~~ll~~~~ 235 (252)
T 4db8_A 199 EALWALSNIAS--GGNEQK-QAVKEAGALEKLEQLQSHEN 235 (252)
T ss_dssp HHHHHHHHHTT--SCHHHH-HHHHHTTHHHHHHTTTTCSS
T ss_pred HHHHHHHHHhc--CCHHHH-HHHHHCCcHHHHHHHhCCCC
Confidence 99999999983 333332 23345567788888888765
No 4
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=95.29 E-value=0.43 Score=40.12 Aligned_cols=178 Identities=12% Similarity=0.205 Sum_probs=128.7
Q ss_pred hHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhc--CCchhhHhHHHHHHHHHHH-HH
Q 021148 80 TLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLRECIRH-QS 156 (316)
Q Consensus 80 ll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY--~~~dial~~G~mLREcir~-e~ 156 (316)
.+..|+..|..=+-+.|..+.....++.+.... ..+.+.. ..++..|+.-- +++++-..+-..|..+..+ +.
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~----~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 77 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPAS----AIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 77 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH----HHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH----HHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 456777777777778888888888888764321 2223322 23444444333 3467777777788887777 78
Q ss_pred HHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhchhhHHH
Q 021148 157 VARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLG 236 (316)
Q Consensus 157 la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQSLKLLg 236 (316)
....+...+.+..+.+.++.++=++...|..++..+-..++.......... .....- +++.+++--+++.++..|+
T Consensus 78 ~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~L~-~~l~~~~~~~~~~a~~~L~ 153 (252)
T 4hxt_A 78 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAG---GVEVLV-KLLTSTDSEVQKEAARALA 153 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHH-HHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC---CHHHHH-HHHcCCCHHHHHHHHHHHH
Confidence 888888888888899999999999999999999999877776666666643 455553 7899999999999999999
Q ss_pred HHhccCCcHHHHHHhhcChhhHHHHHHHhccCC
Q 021148 237 DILLDRSNSVVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 237 elLLdr~N~~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
.|.....+ ..+.+.+..-+..++.+|++++
T Consensus 154 ~l~~~~~~---~~~~~~~~~~i~~L~~ll~~~~ 183 (252)
T 4hxt_A 154 NIASGPDE---AIKAIVDAGGVEVLVKLLTSTD 183 (252)
T ss_dssp HHTTSCHH---HHHHHHHTTHHHHHHHHTTCSC
T ss_pred HHHcCCHH---HHHHHHHCcCHHHHHHHHCCCC
Confidence 99864322 2234445677888888888776
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=94.49 E-value=1.9 Score=39.49 Aligned_cols=182 Identities=14% Similarity=0.166 Sum_probs=125.8
Q ss_pred HHhhchHHHHHhcCCC-CChhhhhhHHHHHHHHhhhc-cCCCccchhhhhcChhHHHHHHHhc--CCchhhHhHHHHHHH
Q 021148 75 FFRENTLRLLITCLPK-LNLEARKDATQVVANLQRQQ-VHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLRE 150 (316)
Q Consensus 75 i~~~dll~~Li~~L~~-L~fE~RKdv~~If~~llr~~-~~~r~p~v~Yl~~~peil~~Ll~gY--~~~dial~~G~mLRE 150 (316)
+...+.+..|+..+.. -+-+.|+.++..+.++.+.. ...+ ...+ ..++..|+..- +++++...+...|+.
T Consensus 145 ~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~---~~~~---~~~l~~L~~~l~~~~~~v~~~a~~~L~~ 218 (450)
T 2jdq_A 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPE---FAKV---SPCLNVLSWLLFVSDTDVLADACWALSY 218 (450)
T ss_dssp HHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCC---GGGT---GGGHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCC---HHHH---HHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 3445788999999985 67889999999999998744 2111 2222 34444444433 345555566666776
Q ss_pred HHHH-HHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehh
Q 021148 151 CIRH-QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRR 229 (316)
Q Consensus 151 cir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkR 229 (316)
+..+ +...+.+...+.+..+.+.+..++-++...|..++..+.+.........+..+ .....- .++.+++--+|+
T Consensus 219 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~-~ll~~~~~~vr~ 294 (450)
T 2jdq_A 219 LSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCS---ALQSLL-HLLSSPKESIKK 294 (450)
T ss_dssp HTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTT---HHHHHH-HHTTCSSHHHHH
T ss_pred HHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCc---cHHHHH-HHHcCCCHHHHH
Confidence 6654 34455666677788888888888999999999999998887665544444433 455553 789999999999
Q ss_pred chhhHHHHHhccCCcHHHHHHhhcChhhHHHHHHHhccCC
Q 021148 230 QAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 230 QSLKLLgelLLdr~N~~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
.++..||.+.. .+-..+...+ +..-+..++.+|++..
T Consensus 295 ~a~~~L~~l~~--~~~~~~~~~~-~~~~l~~L~~~l~~~~ 331 (450)
T 2jdq_A 295 EACWTISNITA--GNRAQIQTVI-DANIFPALISILQTAE 331 (450)
T ss_dssp HHHHHHHHHTT--SCHHHHHHHH-HTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHc--CCHHHHHHHH-HCCCHHHHHHHHhcCC
Confidence 99999999984 3444444433 3456778888888876
No 6
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=94.34 E-value=0.5 Score=39.17 Aligned_cols=159 Identities=12% Similarity=0.118 Sum_probs=113.8
Q ss_pred HHHHHhhchHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhcC--CchhhHhHHHHHH
Q 021148 72 TAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYE--NTDMALHYGAMLR 149 (316)
Q Consensus 72 a~ei~~~dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY~--~~dial~~G~mLR 149 (316)
.+.+...+.+..|+..|..=+-+.|..+.....++.....+ ..+.+. ....+..|+.--+ ++++--.+-..|+
T Consensus 47 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~----~~~~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~ 121 (210)
T 4db6_A 47 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE----QIQAVI-DAGALPALVQLLSSPNEQILQEALWALS 121 (210)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH----HHHHHH-HTTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH----HHHHHH-HCCCHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45567778999999999888888899999888888653221 122222 1223333333322 4566666666677
Q ss_pred HHHH-HHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceeh
Q 021148 150 ECIR-HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITR 228 (316)
Q Consensus 150 Ecir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTk 228 (316)
.... .+...+.+++.+.+..+.+.++.++-++...|..++..+...++.....+...+ .....- +|+.+++.-++
T Consensus 122 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g---~i~~L~-~ll~~~~~~v~ 197 (210)
T 4db6_A 122 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAG---ALEKLE-QLQSHENEKIQ 197 (210)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT---HHHHHH-HGGGCSCHHHH
T ss_pred HHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCC---CHHHHH-HHHhCCCHHHH
Confidence 6654 455566777888889999999999999999999999999887676666665554 455563 78999999999
Q ss_pred hchhhHHHHHh
Q 021148 229 RQAVKLLGDIL 239 (316)
Q Consensus 229 RQSLKLLgelL 239 (316)
++++..|+.|-
T Consensus 198 ~~a~~aL~~l~ 208 (210)
T 4db6_A 198 KEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999998763
No 7
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=93.69 E-value=1.2 Score=36.81 Aligned_cols=175 Identities=13% Similarity=0.109 Sum_probs=116.6
Q ss_pred HHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhc--CCchhhHhHHHHHHHHHH-HHHHHH
Q 021148 83 LLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLRECIR-HQSVAR 159 (316)
Q Consensus 83 ~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY--~~~dial~~G~mLREcir-~e~la~ 159 (316)
.|+.-|..=+-+.|..+.....++.+...+ ..+.+.. ...+..|+..- +++++-..+-..|..+.. .+....
T Consensus 16 ~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~----~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 16 QMVQQLNSPDQQELQSALRKLSQIASGGNE----QIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHH----HHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCHH----HHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 344444445566777777777776542221 1222221 13333333322 256666667777777664 556667
Q ss_pred HHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhchhhHHHHHh
Q 021148 160 YVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDIL 239 (316)
Q Consensus 160 ~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQSLKLLgelL 239 (316)
.+...+.+..+.+.++.++-++...|..++..+-...+......+..+ .+...- .++.+++.-+++.++..|+.+.
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~L~-~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG---ALPALV-QLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHH-HHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcC---cHHHHH-HHHcCCCHHHHHHHHHHHHHHH
Confidence 777788888999999999999999999999998877766665665544 455553 7899999999999999999999
Q ss_pred ccCCcHHHHHHhhcChhhHHHHHHHhccCC
Q 021148 240 LDRSNSVVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 240 Ldr~N~~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
.. +-.. ...+.+..-+..+..+|.+++
T Consensus 167 ~~--~~~~-~~~~~~~g~i~~L~~ll~~~~ 193 (210)
T 4db6_A 167 SG--GNEQ-KQAVKEAGALEKLEQLQSHEN 193 (210)
T ss_dssp TS--CHHH-HHHHHHTTHHHHHHHGGGCSC
T ss_pred cC--CcHH-HHHHHHCCCHHHHHHHHhCCC
Confidence 65 2222 234455567788888888765
No 8
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=93.36 E-value=3.5 Score=39.55 Aligned_cols=182 Identities=13% Similarity=0.117 Sum_probs=126.9
Q ss_pred HhhchHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhc--CCchhhHhHHHHHHHHHH
Q 021148 76 FRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLRECIR 153 (316)
Q Consensus 76 ~~~dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY--~~~dial~~G~mLREcir 153 (316)
...+.+..|+..+..-+-+.|+.++....++.+..... +..... ..++..|+.-- +++++-..+-..|..+..
T Consensus 212 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~--~~~~~~---~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 212 LQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ--PDWSVV---SQALPTLAKLIYSMDTETLVDACWAISYLSD 286 (530)
T ss_dssp HHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSC--CCHHHH---GGGHHHHHHHTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCC--CcHHHH---HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 44578888999888878888999999999988744111 111122 23333333322 345666666666776665
Q ss_pred H-HHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhchh
Q 021148 154 H-QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAV 232 (316)
Q Consensus 154 ~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQSL 232 (316)
. +.....++..+.+..+.+.+..++-++...|..++..+.+........++..+ +...+- .+|.+++.-++..++
T Consensus 287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~-~lL~~~~~~vr~~A~ 362 (530)
T 1wa5_B 287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAG---VLPALR-LLLSSPKENIKKEAC 362 (530)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHH-HHTTCSCHHHHHHHH
T ss_pred CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcc---hHHHHH-HHHcCCCHHHHHHHH
Confidence 3 44556677777788888888888889999999999998887776666666544 455553 789999999999999
Q ss_pred hHHHHHhccCCcHHHHHHhhcChhhHHHHHHHhccCC
Q 021148 233 KLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 233 KLLgelLLdr~N~~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
..||.+.. .+......++ +..-+..++.+|++.+
T Consensus 363 ~aL~~l~~--~~~~~~~~~~-~~~~l~~L~~lL~~~~ 396 (530)
T 1wa5_B 363 WTISNITA--GNTEQIQAVI-DANLIPPLVKLLEVAE 396 (530)
T ss_dssp HHHHHHTT--SCHHHHHHHH-HTTCHHHHHHHHHHSC
T ss_pred HHHHHHHc--CCHHHHHHHH-HCCCHHHHHHHHhcCC
Confidence 99999874 3444444444 5567888888998776
No 9
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=93.07 E-value=2.2 Score=36.17 Aligned_cols=157 Identities=12% Similarity=0.115 Sum_probs=113.1
Q ss_pred HHHhhchHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhcC--CchhhHhHHHHHHHH
Q 021148 74 EFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYE--NTDMALHYGAMLREC 151 (316)
Q Consensus 74 ei~~~dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY~--~~dial~~G~mLREc 151 (316)
.+...+.+..|+..|..=+-+.|..++....++..... ...+.+. ...++..|+..-. ++++...+-..|...
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~----~~~~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 165 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN----EQIQAVI-DAGALPALVQLLSSPNEQILQEALWALSNI 165 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH----HHHHHHH-HTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc----hHHHHHH-HCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 34456788999999988788889999988888854221 1113333 2334444444433 456666666677776
Q ss_pred HH-HHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhc
Q 021148 152 IR-HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQ 230 (316)
Q Consensus 152 ir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQ 230 (316)
.. .+.....+...+.+..+.+.+..++-++...|..++..+...++.....++..+ .....- .++.+++.-+++.
T Consensus 166 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g---~i~~L~-~ll~~~~~~v~~~ 241 (252)
T 4db8_A 166 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAG---ALEKLE-QLQSHENEKIQKE 241 (252)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHH-TTTTCSSSHHHHT
T ss_pred HcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCC---cHHHHH-HHhCCCCHHHHHH
Confidence 65 445666777788888999999999999999999999999877777666666654 455563 7899999999999
Q ss_pred hhhHHHHHh
Q 021148 231 AVKLLGDIL 239 (316)
Q Consensus 231 SLKLLgelL 239 (316)
+...|+.|-
T Consensus 242 A~~~L~~l~ 250 (252)
T 4db8_A 242 AQEALEKLQ 250 (252)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHHh
Confidence 999988653
No 10
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=90.84 E-value=3.3 Score=37.92 Aligned_cols=162 Identities=14% Similarity=0.129 Sum_probs=105.5
Q ss_pred HHHhhchHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhc-C--hhHHHHHHHhcCCchhhHhHHHHHHH
Q 021148 74 EFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEA-N--IDLLDILIAGYENTDMALHYGAMLRE 150 (316)
Q Consensus 74 ei~~~dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~-~--peil~~Ll~gY~~~dial~~G~mLRE 150 (316)
.+...+.+..|+..|..=+.+.|+.+....+++.+... ...+.+.. . |-++..|-. +++++-..+-..|..
T Consensus 271 ~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~----~~~~~~~~~~~l~~L~~~l~~--~~~~v~~~a~~~L~~ 344 (450)
T 2jdq_A 271 VILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNR----AQIQTVIDANIFPALISILQT--AEFRTRKEAAWAITN 344 (450)
T ss_dssp HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH----HHHHHHHHTTHHHHHHHHHHH--SCHHHHHHHHHHHHH
T ss_pred HHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH----HHHHHHHHCCCHHHHHHHHhc--CCHHHHHHHHHHHHH
Confidence 35566788999999988788899999998888875211 11222221 1 333333332 356666666666666
Q ss_pred HHHH--HHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHH--HHHhcHHHH------HHHhhhhhc
Q 021148 151 CIRH--QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAE--FLSKNYDWF------FAEYNSKLL 220 (316)
Q Consensus 151 cir~--e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvae--fl~~Nyd~F------f~~yn~~LL 220 (316)
+..+ +...+.++....+..+.+.++.++.+|...|...+..++.....-... --..+|-.. ..... .|+
T Consensus 345 l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~-~l~ 423 (450)
T 2jdq_A 345 ATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIE-FLQ 423 (450)
T ss_dssp HHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHH-HHH
T ss_pred HHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHH-HHH
Confidence 6653 455666777778888899999899999888888888887644321100 000112222 23453 788
Q ss_pred cCCCceehhchhhHHHHHhccC
Q 021148 221 ESSNYITRRQAVKLLGDILLDR 242 (316)
Q Consensus 221 ~S~NYVTkRQSLKLLgelLLdr 242 (316)
.++||-.+.+++.+|+.++-+.
T Consensus 424 ~~~~~~v~~~a~~~l~~~~~~~ 445 (450)
T 2jdq_A 424 SHENQEIYQKAFDLIEHYFGTE 445 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC
T ss_pred cCCCHHHHHHHHHHHHHHCCcc
Confidence 8999999999999999887543
No 11
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=90.09 E-value=5.1 Score=38.24 Aligned_cols=160 Identities=14% Similarity=0.198 Sum_probs=110.2
Q ss_pred HHHHhhchHHHHHhcCCCC-ChhhhhhHHHHHHHHhhhccCCCccchhhhhcC---hhHHHHHHHhcCCchhhHhHHHHH
Q 021148 73 AEFFRENTLRLLITCLPKL-NLEARKDATQVVANLQRQQVHSKLIASDYLEAN---IDLLDILIAGYENTDMALHYGAML 148 (316)
Q Consensus 73 ~ei~~~dll~~Li~~L~~L-~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~---peil~~Ll~gY~~~dial~~G~mL 148 (316)
+.+.+.+.+..|+..|..= +-+.|+.++.+.+++... ....+.++... |-++..|-.+ ++++-..+-..|
T Consensus 322 ~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~----~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL 395 (528)
T 4b8j_A 322 QCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG----NKDQIQAVINAGIIGPLVNLLQTA--EFDIKKEAAWAI 395 (528)
T ss_dssp HHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS----CHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC----CHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHH
Confidence 3556677888888888776 888999999999998762 12234455432 5555555544 667777777777
Q ss_pred HHHHHH--HHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHH----------HHHHHHhcHHHHHHHhh
Q 021148 149 RECIRH--QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKST----------VAEFLSKNYDWFFAEYN 216 (316)
Q Consensus 149 REcir~--e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~l----------vaefl~~Nyd~Ff~~yn 216 (316)
..+..+ +...+++...+.+..+.+.++.++-++-.-|...+..++...... .++.+... ...+...
T Consensus 396 ~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~l~ 473 (528)
T 4b8j_A 396 SNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEA--EGLEKIE 473 (528)
T ss_dssp HHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHT--THHHHHH
T ss_pred HHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHC--CcHHHHH
Confidence 777766 667778888888999999999898898888888888888754431 22222211 1233443
Q ss_pred hhhccCCCceehhchhhHHHHHhcc
Q 021148 217 SKLLESSNYITRRQAVKLLGDILLD 241 (316)
Q Consensus 217 ~~LL~S~NYVTkRQSLKLLgelLLd 241 (316)
.|..++|.-.+..+.++|..+.-.
T Consensus 474 -~L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 474 -NLQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp -HGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred -HHHcCCCHHHHHHHHHHHHHHCCC
Confidence 678888888888888777766643
No 12
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=88.76 E-value=17 Score=34.63 Aligned_cols=188 Identities=13% Similarity=0.125 Sum_probs=126.1
Q ss_pred HHHHhhchHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhc---CCchhhHhHHHHHH
Q 021148 73 AEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY---ENTDMALHYGAMLR 149 (316)
Q Consensus 73 ~ei~~~dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY---~~~dial~~G~mLR 149 (316)
+.+...+.+..|+..|..=+-+.|..+..+.+++.... ....+.+.. ..++..|+..- .++++.-.+-..|.
T Consensus 280 ~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~----~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~A~~~L~ 354 (528)
T 4b8j_A 280 QAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGD----DAQTQCIID-HQALPCLLSLLTQNLKKSIKKEACWTIS 354 (528)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC----HHHHHHHHT-TTHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCC----HHHHHHHHH-hhhHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 45567788999999998888888888888888887522 122333332 33333333222 14556555555666
Q ss_pred HHHH-HHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhh-ChHHHHHHHHhcHHHHHHHhhhhhccCCCcee
Q 021148 150 ECIR-HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTR-HKSTVAEFLSKNYDWFFAEYNSKLLESSNYIT 227 (316)
Q Consensus 150 Ecir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~-Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVT 227 (316)
.+.. .+.....++..+.+..+.+.++.+++++-..|..++..+... .+.....+...+ .+..+ ..||.+++--+
T Consensus 355 nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~---~i~~L-~~lL~~~d~~v 430 (528)
T 4b8j_A 355 NITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEG---CIKPL-CDLLICPDIRI 430 (528)
T ss_dssp HHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT---CHHHH-HHGGGCSCHHH
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCC---CHHHH-HHHHcCCCHHH
Confidence 6554 445566677777788888888888999999999999888776 454444444433 34444 37888888888
Q ss_pred hhchhhHHHHHhccCCcH--------HHHHHhhcChhhHHHHHHHhccCC
Q 021148 228 RRQAVKLLGDILLDRSNS--------VVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 228 kRQSLKLLgelLLdr~N~--------~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
+..++..|+.|+-.-.+. +-....+.+..-+..+..|+.+++
T Consensus 431 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~ 480 (528)
T 4b8j_A 431 VTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDN 480 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSS
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCC
Confidence 999999999998543321 124556666777888888887776
No 13
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=87.92 E-value=19 Score=37.16 Aligned_cols=180 Identities=12% Similarity=0.123 Sum_probs=124.2
Q ss_pred hchHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhc---CCchhhHhHHHHHHHHHHH
Q 021148 78 ENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY---ENTDMALHYGAMLRECIRH 154 (316)
Q Consensus 78 ~dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY---~~~dial~~G~mLREcir~ 154 (316)
.+.+..|+..|..=+-+.|..++....++-.... ...-+...++++..|+..- +++++-..+-..|+.+.+.
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~-----~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~ 223 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-----SRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH 223 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHH-----HHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCCh-----hHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC
Confidence 5667777777766677778888877777755321 1223345677777766543 4788888899999998887
Q ss_pred HHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhchhhH
Q 021148 155 QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKL 234 (316)
Q Consensus 155 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQSLKL 234 (316)
+.-...+.....+..+.+.++.++=++--.|..++..|-..+..........+ .+..+- .||.++|--.++.++..
T Consensus 224 ~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g---~v~~Lv-~lL~~~~~~v~~~a~~a 299 (780)
T 2z6g_A 224 REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAG---GLQKMV-ALLNKTNVKFLAITTDC 299 (780)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTT---HHHHHH-HGGGCCCHHHHHHHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcC---CHHHHH-HHHhcCCHHHHHHHHHH
Confidence 77777777778888899999998888999999999998876554443333333 344453 78888876667777778
Q ss_pred HHHHhccCCcHHHHHHhhcChhhHHHHHHHhccCC
Q 021148 235 LGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 235 LgelLLdr~N~~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
|+.+-. .|-......+. ...+..++.+|++.+
T Consensus 300 L~~La~--~~~e~~~~i~~-~~~i~~Lv~lL~~~~ 331 (780)
T 2z6g_A 300 LQILAY--GNQESKLIILA-SGGPQALVNIMRTYT 331 (780)
T ss_dssp HHHHHT--TCHHHHHHHHT-TTHHHHHHHHHTTCC
T ss_pred HHHHhc--CChHHHHHHHH-cCCHHHHHHHHhcCC
Confidence 875553 34444444444 356777777777665
No 14
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=87.80 E-value=3.3 Score=39.71 Aligned_cols=183 Identities=16% Similarity=0.184 Sum_probs=121.1
Q ss_pred hchHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhc--CCchhhHhHHHHHHHHHH-H
Q 021148 78 ENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLRECIR-H 154 (316)
Q Consensus 78 ~dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY--~~~dial~~G~mLREcir-~ 154 (316)
.+++..|+..|..=+-+.|.++.....++..... ...+.+.. ..++..|+..- .++++-..+-..|..+.. .
T Consensus 256 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~----~~~~~~~~-~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~ 330 (530)
T 1wa5_B 256 SQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ----EAIQAVID-VRIPKRLVELLSHESTLVQTPALRAVGNIVTGN 330 (530)
T ss_dssp GGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH----HHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCH----HHHHHHHh-cCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCC
Confidence 3578888888877777888888888887765321 11233322 12333333322 345555556566666554 3
Q ss_pred HHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhchhhH
Q 021148 155 QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKL 234 (316)
Q Consensus 155 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQSLKL 234 (316)
+...+.++....+..+.++++.++.+|...|..++..+-...+..+..++..+ ++...- .+|.++++-+++.++..
T Consensus 331 ~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~---~l~~L~-~lL~~~~~~v~~~a~~a 406 (530)
T 1wa5_B 331 DLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDAN---LIPPLV-KLLEVAEYKTKKEACWA 406 (530)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---CHHHHH-HHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC---CHHHHH-HHHhcCCHHHHHHHHHH
Confidence 55666777777788888899999999999999999987765665555555443 344442 67788999999999999
Q ss_pred HHHHhccCCcHHHHHHhhcChhhHHHHHHHhccCC
Q 021148 235 LGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 235 LgelLLdr~N~~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
|+.+...-....-..+|+-+..-+..+..+|.++.
T Consensus 407 L~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~ 441 (530)
T 1wa5_B 407 ISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIAD 441 (530)
T ss_dssp HHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCC
T ss_pred HHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCC
Confidence 99998753210012334445667888888888776
No 15
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=87.41 E-value=27 Score=35.53 Aligned_cols=170 Identities=14% Similarity=0.135 Sum_probs=106.0
Q ss_pred HHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhcCCchhhHhHHHH--HHHHHHH-H-HH
Q 021148 82 RLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAM--LRECIRH-Q-SV 157 (316)
Q Consensus 82 ~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY~~~dial~~G~m--LREcir~-e-~l 157 (316)
..++..|..=+-..|+.++.+.+.+.+.. +...-|+++..|+..-.+++.....|.+ |+..++. . .+
T Consensus 93 ~~ll~~l~~~~~~vr~~~a~~i~~ia~~~---------~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~ 163 (852)
T 4fdd_A 93 SECLNNIGDSSPLIRATVGILITTIASKG---------ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEIL 163 (852)
T ss_dssp HHHHTTTTCSSHHHHHHHHHHHHHHHHHT---------TTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhc---------CccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHh
Confidence 44555555555567777777777777643 1234589999998888776654333332 2221111 0 01
Q ss_pred HHHHh---cchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhchhhH
Q 021148 158 ARYVL---ESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKL 234 (316)
Q Consensus 158 a~~iL---~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQSLKL 234 (316)
.+.-+ -...+-.+++.++.++-+|-.-|..++..++..+.. -+..+.+.+....- +++.+++--+|+++++.
T Consensus 164 ~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~----~~~~~~~~~l~~l~-~~~~d~~~~vr~~a~~~ 238 (852)
T 4fdd_A 164 DSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ----ALMLHIDSFIENLF-ALAGDEEPEVRKNVCRA 238 (852)
T ss_dssp HHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH----HHHTSHHHHHHHHH-HHHTCCCHHHHHHHHHH
T ss_pred chhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH----HHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHH
Confidence 10000 011344566667778888888888888766654332 23455667777764 78889999999999999
Q ss_pred HHHHhccCCcHHHHHHhhcChhhHHHHHHHhccCC
Q 021148 235 LGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 235 LgelLLdr~N~~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
|+++.- .....+..|+. .=+..++.+++|+.
T Consensus 239 L~~l~~--~~~~~~~~~l~--~l~~~l~~~~~~~~ 269 (852)
T 4fdd_A 239 LVMLLE--VRMDRLLPHMH--NIVEYMLQRTQDQD 269 (852)
T ss_dssp HHHHHH--HCHHHHGGGHH--HHHHHHHHHHTCSS
T ss_pred HHHHHH--hCHHHHHHHHH--HHHHHHHHHccCCc
Confidence 999984 35566667765 35666777888876
No 16
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=86.41 E-value=20 Score=32.90 Aligned_cols=208 Identities=13% Similarity=0.100 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHhhcCC-Cchhhhh-HHHHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhchHHHHHh-cCCC
Q 021148 14 DIVRQTRDLIIYANRSA-DVRESKR-EDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLIT-CLPK 90 (316)
Q Consensus 14 elVr~l~e~l~~L~~~~-~~~~~K~-~~k~eeisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~-~L~~ 90 (316)
+-++.+++++..|.+.. ..+.... ..-.++-...+..+..++.+. .-++.+.+.+-+..|+. .|..
T Consensus 25 d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~-----------dna~~~~~~G~l~~Lv~~lL~s 93 (296)
T 1xqr_A 25 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENM-----------DNAADFCQLSGMHLLVGRYLEA 93 (296)
T ss_dssp HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSH-----------HHHHHHHHTTHHHHHHHTTTTC
T ss_pred CHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhCh-----------hhHHHHHHcCCHHHHHHHHHcC
Confidence 44777788888887641 1111110 000133334455555544411 24566777888899999 8888
Q ss_pred CChhhhhhHHHHHHHHhhhccCCCccchhhhhc---ChhHHHHHHHhcCCchhhHhHHHHHHHHHHH-HHHHHHHhcchh
Q 021148 91 LNLEARKDATQVVANLQRQQVHSKLIASDYLEA---NIDLLDILIAGYENTDMALHYGAMLRECIRH-QSVARYVLESQH 166 (316)
Q Consensus 91 L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~---~peil~~Ll~gY~~~dial~~G~mLREcir~-e~la~~iL~~~~ 166 (316)
=+-+.|..++.+.+++...... .-+++.. -|-++..|-.+. ++++.-.+-.-|--++++ +.....+...+.
T Consensus 94 ~~~~vr~~Aa~~Lg~ia~~n~~----~~~~vv~~g~l~~Ll~LL~~~~-~~~v~~~A~~ALsnl~~~~~~~~~~~~~~gg 168 (296)
T 1xqr_A 94 GAAGLRWRAAQLIGTCSQNVAA----IQEQVLGLGALRKLLRLLDRDA-CDTVRVKALFAISCLVREQEAGLLQFLRLDG 168 (296)
T ss_dssp SSHHHHHHHHHHHHHHHTTCHH----HHHHHHHTTHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHHHHhCCHH----HHHHHHHCCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCC
Confidence 8888999999999988752211 1223332 144444443222 333433333334444443 344445555566
Q ss_pred hHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhchhhHHHHHhcc
Q 021148 167 MKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLD 241 (316)
Q Consensus 167 f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQSLKLLgelLLd 241 (316)
+-.+...++.+++++-.+|...+..+...+......+.+.+ ++...- .||.+++--++.+++..|+.|+.+
T Consensus 169 i~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g---~i~~Lv-~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 169 FSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG---MVQQLV-ALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT---HHHHHH-HHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcC---CHHHHH-HHHcCCChhHHHHHHHHHHHHHhC
Confidence 66777778889999999999999999888777777777766 444553 789999999999999999999976
No 17
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=83.51 E-value=29 Score=32.39 Aligned_cols=180 Identities=12% Similarity=0.109 Sum_probs=113.9
Q ss_pred hchHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHh---cCCchhhHhHHHHHHHHHHH
Q 021148 78 ENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAG---YENTDMALHYGAMLRECIRH 154 (316)
Q Consensus 78 ~dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~g---Y~~~dial~~G~mLREcir~ 154 (316)
.+.+..|+..|..=+-+.|..++....++-+.. +..+-+...+..+..|++. -+++++-..+-..|+.+.+.
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~-----~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~ 90 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-----ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH 90 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-----HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-----ccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 445556666555556667777777777765422 1122333444555544432 24678888888889998888
Q ss_pred HHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhchhhH
Q 021148 155 QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKL 234 (316)
Q Consensus 155 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQSLKL 234 (316)
+.....+...+.+-.+.+.++.++-++-..|..++..+...+..........+ .....- .++.+++--.+..+...
T Consensus 91 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g---~i~~L~-~ll~~~~~~~~~~~~~~ 166 (529)
T 1jdh_A 91 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG---GLQKMV-ALLNKTNVKFLAITTDC 166 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHT---HHHHHH-HGGGCCCHHHHHHHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcC---CHHHHH-HHHhcCCHHHHHHHHHH
Confidence 77777788888888999999999888889999999998876543333333333 334443 67888776666677777
Q ss_pred HHHHhccCCcHHHHHHhhcChhhHHHHHHHhccCC
Q 021148 235 LGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 235 LgelLLdr~N~~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
|+.+-.. |-......+. ..-+..++.+|++.+
T Consensus 167 L~~la~~--~~~~~~~i~~-~~~i~~L~~ll~~~~ 198 (529)
T 1jdh_A 167 LQILAYG--NQESKLIILA-SGGPQALVNIMRTYT 198 (529)
T ss_dssp HHHHHTT--CHHHHHHHHH-TTHHHHHHHHHHHCC
T ss_pred HHHHHhC--CHHHHHHHHH-CCCHHHHHHHHHhCC
Confidence 7766542 3333222222 244666666676654
No 18
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=83.10 E-value=34 Score=32.96 Aligned_cols=179 Identities=13% Similarity=0.185 Sum_probs=120.2
Q ss_pred chHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhc-C--hhHHHHHHHhcCCchhhHhHHHHHHHHHH-H
Q 021148 79 NTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEA-N--IDLLDILIAGYENTDMALHYGAMLRECIR-H 154 (316)
Q Consensus 79 dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~-~--peil~~Ll~gY~~~dial~~G~mLREcir-~ 154 (316)
+.++.|+..|..=+-+.+.+++....++.....+ ..+-+.. . |-++..| +..++++...+-..|+.++. .
T Consensus 251 ~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~----~~~~v~~~g~i~~Lv~lL--~~~~~~v~~~a~~aL~nl~~~~ 324 (529)
T 3tpo_A 251 QILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE----RIEMVVKKGVVPQLVKLL--GATELPIVTPALRAIGNIVTGT 324 (529)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHH----HHHHHHTTTCHHHHHHHH--TCSCHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhh----hHHHHHhccchHHHHHHh--cCCChhHHHHHHHHHHHHHccc
Confidence 3566777777777777788777777766542211 1111211 1 2222222 23455666666666776655 4
Q ss_pred HHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhchhhH
Q 021148 155 QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKL 234 (316)
Q Consensus 155 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQSLKL 234 (316)
+.....++....+..+...++.++=+|-..|..++.-+-..++......+..+ .+...- .++.++++-+++.+..-
T Consensus 325 ~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g---~i~~Lv-~lL~~~~~~v~~~A~~a 400 (529)
T 3tpo_A 325 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG---LVPFLV-GVLSKADFKTQKAAAWA 400 (529)
T ss_dssp HHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTT---HHHHHH-HHHHSSCHHHHHHHHHH
T ss_pred hHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcC---cHHHHH-HHhcCCCHHHHHHHHHH
Confidence 55667778887777888888899999999999999988777766666666655 344443 78899999999999999
Q ss_pred HHHHhccCCcHHHHHHhhcChhhHHHHHHHhccCC
Q 021148 235 LGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 235 LgelLLdr~N~~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
|+.+......-. .+|+-+..-++.++.||+++.
T Consensus 401 L~nl~~~~~~~~--~~~l~~~g~i~~L~~LL~~~d 433 (529)
T 3tpo_A 401 ITNYTSGGTVEQ--IVYLVHCGIIEPLMNLLSAKD 433 (529)
T ss_dssp HHHHHHHSCHHH--HHHHHHTTCHHHHHHGGGCSC
T ss_pred HHHHHcCCCHHH--HHHHHHCcCHHHHHHHhcCCC
Confidence 999987554332 345666667888888888766
No 19
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=80.74 E-value=46 Score=32.82 Aligned_cols=182 Identities=12% Similarity=0.113 Sum_probs=116.3
Q ss_pred HhhchHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhc---CCchhhHhHHHHHHHHH
Q 021148 76 FRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY---ENTDMALHYGAMLRECI 152 (316)
Q Consensus 76 ~~~dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY---~~~dial~~G~mLREci 152 (316)
+..+.+..|+..|..=+-+.|..++....++-+.. +...-+...+.++..|++.- +++++-..+-..|+.+.
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-----~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls 85 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-----ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS 85 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-----THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-----hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 34455666666666556677777777777776532 12233344556666655443 36778788888899888
Q ss_pred HHHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhchh
Q 021148 153 RHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAV 232 (316)
Q Consensus 153 r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQSL 232 (316)
+++.....+.....+-.+.+.++.++-++-..|..++..+..........+.... .....- .+|.++|--.+..++
T Consensus 86 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g---~i~~Lv-~lL~~~~~~~~~~a~ 161 (644)
T 2z6h_A 86 HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG---GLQKMV-ALLNKTNVKFLAITT 161 (644)
T ss_dssp TSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTT---HHHHHH-HGGGCCCHHHHHHHH
T ss_pred cChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCC---ChHHHH-HHHCcCCHHHHHHHH
Confidence 8877777788888888899999999888999999999999876544444444333 333442 678887754455556
Q ss_pred hHHHHHhccCCcHHHHHHhhcChhhHHHHHHHhccCC
Q 021148 233 KLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 233 KLLgelLLdr~N~~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
..|+.+-.. |-......+ +..-+..++.+|++.+
T Consensus 162 ~~L~~La~~--~~~~~~~i~-~~g~v~~Lv~lL~~~~ 195 (644)
T 2z6h_A 162 DCLQILAYG--NQESKLIIL-ASGGPQALVNIMRTYT 195 (644)
T ss_dssp HHHHHHHTT--CHHHHHHHH-HTTHHHHHHHHHTTCC
T ss_pred HHHHHHHhc--CcHHHHHHH-HcCChHHHHHHHHcCC
Confidence 677776642 222222222 2345666666666554
No 20
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=78.21 E-value=15 Score=34.61 Aligned_cols=164 Identities=14% Similarity=0.210 Sum_probs=107.7
Q ss_pred HHHhhchHHHHHhcC-CCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHH----HhcCCc--hhhHhHHH
Q 021148 74 EFFRENTLRLLITCL-PKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILI----AGYENT--DMALHYGA 146 (316)
Q Consensus 74 ei~~~dll~~Li~~L-~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll----~gY~~~--dial~~G~ 146 (316)
.+...+.+..|+..| ..=+-+.++.++....+|-...-+.+ .. +......+..|+ .+.+.+ ++.-.+..
T Consensus 165 ~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk---~~-i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~ 240 (354)
T 3nmw_A 165 TLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK---AD-ICAVDGALAFLVGTLTYRSQTNTLAIIESGGG 240 (354)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH---HH-HHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh---HH-HHHhcCcHHHHHHHhccCCCcccHHHHHHHHH
Confidence 345566777777764 33456677766554444432111111 11 111222333332 222221 46666677
Q ss_pred HHHHHHH----HHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccC
Q 021148 147 MLRECIR----HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLES 222 (316)
Q Consensus 147 mLREcir----~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S 222 (316)
.||.... .+.-...+.+.+.+-.+.+.+..+++++-..|-.++..+-.....-.......+ .+... ..|+.+
T Consensus 241 aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G---~i~~L-v~LL~s 316 (354)
T 3nmw_A 241 ILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG---AVSML-KNLIHS 316 (354)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTT---HHHHH-HTTTTC
T ss_pred HHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCC---CHHHH-HHHHhC
Confidence 7887664 566667788888899999999999999999999999998766666666666655 33444 379999
Q ss_pred CCceehhchhhHHHHHhccCCcH
Q 021148 223 SNYITRRQAVKLLGDILLDRSNS 245 (316)
Q Consensus 223 ~NYVTkRQSLKLLgelLLdr~N~ 245 (316)
++--+|+.+..-|..|..++.+.
T Consensus 317 ~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 317 KHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCGG
T ss_pred CCHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999887764
No 21
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=76.30 E-value=8.6 Score=41.00 Aligned_cols=148 Identities=13% Similarity=0.146 Sum_probs=88.8
Q ss_pred hHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhcCC--chhhHhHHHHHHHHHHHHHH
Q 021148 80 TLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYEN--TDMALHYGAMLRECIRHQSV 157 (316)
Q Consensus 80 ll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY~~--~dial~~G~mLREcir~e~l 157 (316)
++..|+..|..=+.+.|+-+......+...- +. . ..+.|+..|+.+..+ +.+-..++.-|..++.+-.-
T Consensus 49 il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~-----~~-~---~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~ 119 (1230)
T 1u6g_C 49 VVKMILKLLEDKNGEVQNLAVKCLGPLVSKV-----KE-Y---QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPP 119 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHTTS-----CH-H---HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC-----CH-H---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCC
Confidence 4455666666678888988888887776521 11 2 236788888888644 33433445555554432110
Q ss_pred H------HHHhcchhhHhhhhhcc-CCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhc
Q 021148 158 A------RYVLESQHMKKFFDYIQ-LPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQ 230 (316)
Q Consensus 158 a------~~iL~~~~f~~fF~yv~-~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQ 230 (316)
. ..-...+.+-.+++.++ .++.++...|+.++.+++....+.+.. ..+.+...+- .++.+++-.+|++
T Consensus 120 ~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~----~~~~ll~~l~-~~L~~~~~~vR~~ 194 (1230)
T 1u6g_C 120 ASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN----FHPSILTCLL-PQLTSPRLAVRKR 194 (1230)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT----THHHHHHHHG-GGGGCSSHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH----HHHHHHHHHH-HHHcCCcHHHHHH
Confidence 0 00011223445566666 588899999999999998654332222 3345555553 6677777777778
Q ss_pred hhhHHHHHhcc
Q 021148 231 AVKLLGDILLD 241 (316)
Q Consensus 231 SLKLLgelLLd 241 (316)
+++-||.+...
T Consensus 195 a~~al~~l~~~ 205 (1230)
T 1u6g_C 195 TIIALGHLVMS 205 (1230)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHHHh
Confidence 87777777643
No 22
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=75.00 E-value=61 Score=31.17 Aligned_cols=188 Identities=10% Similarity=0.108 Sum_probs=116.3
Q ss_pred HHHHhhchHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcC--hhHHHHHHHhcCCchhhHhHHHHHHH
Q 021148 73 AEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEAN--IDLLDILIAGYENTDMALHYGAMLRE 150 (316)
Q Consensus 73 ~ei~~~dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~--peil~~Ll~gY~~~dial~~G~mLRE 150 (316)
+.+...+.+..|+..|..=+-+.+..+.....++..... .....+... -..|..|+.. .++++--.+...|..
T Consensus 287 ~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~----~~~~~i~~~g~l~~L~~LL~~-~~~~i~~~a~~aL~n 361 (529)
T 3tpo_A 287 EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD----EQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSN 361 (529)
T ss_dssp HHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH----HHHHHHHHTTGGGGHHHHTTC-SSHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccch----HHHHHHhhcccHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence 345677888899998888888888888888888764211 111222111 1222223322 234444444455555
Q ss_pred HHH-HHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhC-hHHHHHHHHhcHHHHHHHhhhhhccCCCceeh
Q 021148 151 CIR-HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRH-KSTVAEFLSKNYDWFFAEYNSKLLESSNYITR 228 (316)
Q Consensus 151 cir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~H-k~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTk 228 (316)
+.. .+.....+.....+..+...+..+++++-..|..++.-+.... ...+......+ ..... ..||.+++-=+.
T Consensus 362 l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g---~i~~L-~~LL~~~d~~i~ 437 (529)
T 3tpo_A 362 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCG---IIEPL-MNLLSAKDTKII 437 (529)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT---CHHHH-HHGGGCSCHHHH
T ss_pred HhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCc---CHHHH-HHHhcCCCHHHH
Confidence 444 4555666777778888888999999999999988888876643 22222233333 23334 368888887778
Q ss_pred hchhhHHHHHhc---cCCcHHHHHHhhcChhhHHHHHHHhccCC
Q 021148 229 RQAVKLLGDILL---DRSNSVVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 229 RQSLKLLgelLL---dr~N~~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
+.+|.-|..|+- .-.+.+-+..+|.+..-+..+-.|..+++
T Consensus 438 ~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n 481 (529)
T 3tpo_A 438 QVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHEN 481 (529)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSS
T ss_pred HHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCC
Confidence 888888888762 11234455566666666777666666665
No 23
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=74.39 E-value=33 Score=33.55 Aligned_cols=162 Identities=14% Similarity=0.203 Sum_probs=106.5
Q ss_pred HHHhhchHHHHHhc-CCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHH----HhcCCc--hhhHhHHH
Q 021148 74 EFFRENTLRLLITC-LPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILI----AGYENT--DMALHYGA 146 (316)
Q Consensus 74 ei~~~dll~~Li~~-L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll----~gY~~~--dial~~G~ 146 (316)
.+...+.+..|+.. +..=+-+.++.++....+|-....+.+. -+......+..|+ .+-+.+ ++.-.+..
T Consensus 281 ~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~----~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~ 356 (458)
T 3nmz_A 281 TLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA----DICAVDGALAFLVGTLTYRSQTNTLAIIESGGG 356 (458)
T ss_dssp HHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH----HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH----HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHH
Confidence 44556777888886 4444666676655444444321111111 1121222333332 222222 36666777
Q ss_pred HHHHHHH----HHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccC
Q 021148 147 MLRECIR----HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLES 222 (316)
Q Consensus 147 mLREcir----~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S 222 (316)
.||.+.. .+.-...+.+.+.+-.+.+.+..+++++-..|-.++..+-...+.......... .+.-. ..|+.+
T Consensus 357 aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G---~I~~L-v~LL~s 432 (458)
T 3nmz_A 357 ILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG---AVSML-KNLIHS 432 (458)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHT---HHHHH-HTTTTC
T ss_pred HHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCC---CHHHH-HHHHhC
Confidence 8888764 566667788888899999999999999999999999999777776666666655 33444 379999
Q ss_pred CCceehhchhhHHHHHhccCC
Q 021148 223 SNYITRRQAVKLLGDILLDRS 243 (316)
Q Consensus 223 ~NYVTkRQSLKLLgelLLdr~ 243 (316)
++--+++.+..-|..|+.++.
T Consensus 433 ~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 433 KHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp SSHHHHHHHHHHHHHHHTCCS
T ss_pred CCHHHHHHHHHHHHHHHcCCH
Confidence 999999999999999997654
No 24
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=73.85 E-value=19 Score=36.64 Aligned_cols=175 Identities=9% Similarity=0.116 Sum_probs=103.0
Q ss_pred HHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhcC--CchhhHhHHHHHHHHHHHHHHHH
Q 021148 82 RLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYE--NTDMALHYGAMLRECIRHQSVAR 159 (316)
Q Consensus 82 ~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY~--~~dial~~G~mLREcir~e~la~ 159 (316)
..++..+..-+-+.|.-++..+.+.+++.- ..++ -..+..|-..|+.+-. ++.+-...+..+.+..+++...
T Consensus 51 ~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w----~~~~-~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~- 124 (852)
T 4fdd_A 51 IFVLTKLKSEDEPTRSLSGLILKNNVKAHF----QNFP-NGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ- 124 (852)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHTTTSG----GGCC-HHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTT-
T ss_pred HHHHhccCCCChHHHHHHHHHHHHHHHHcc----CCCC-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcc-
Confidence 344444556677778877777777765421 1100 0123445555555543 4556667777777777665211
Q ss_pred HHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHH-HHHHhcHHHHHHHhhhhhccCCCceehhchhhHHHHH
Q 021148 160 YVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVA-EFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDI 238 (316)
Q Consensus 160 ~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lva-efl~~Nyd~Ff~~yn~~LL~S~NYVTkRQSLKLLgel 238 (316)
-+.+.+-.+++.++.++..+---|+.++..+......... +.+....+.++..+- +++.+++--.|..+++-|+.+
T Consensus 125 --~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~-~~l~~~~~~vR~~A~~aL~~~ 201 (852)
T 4fdd_A 125 --NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFL-QFFKHSSPKIRSHAVACVNQF 201 (852)
T ss_dssp --TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHT-TTTTCSSHHHHHHHHHHHHTT
T ss_pred --ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHH
Confidence 1122344556677777777777778777777765433221 122233566676774 788899999999999999988
Q ss_pred hccCCcHHHHHHhhcChhhHHHHHHHhccCC
Q 021148 239 LLDRSNSVVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 239 LLdr~N~~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
+-... ..+..++ ++-+..+..++.|++
T Consensus 202 ~~~~~--~~~~~~~--~~~l~~l~~~~~d~~ 228 (852)
T 4fdd_A 202 IISRT--QALMLHI--DSFIENLFALAGDEE 228 (852)
T ss_dssp TTTTC--HHHHTSH--HHHHHHHHHHHTCCC
T ss_pred Hhccc--HHHHHHH--HHHHHHHHHHcCCCC
Confidence 74322 2222222 345666777777766
No 25
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=72.85 E-value=69 Score=30.77 Aligned_cols=179 Identities=13% Similarity=0.190 Sum_probs=117.2
Q ss_pred chHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcC---hhHHHHHHHhcCCchhhHhHHHHHHHHHH-H
Q 021148 79 NTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEAN---IDLLDILIAGYENTDMALHYGAMLRECIR-H 154 (316)
Q Consensus 79 dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~---peil~~Ll~gY~~~dial~~G~mLREcir-~ 154 (316)
..+..|+..+..=+-|.+.+++....++.....+ ..+.+... |-++..| +..++.+-..+-..|..+.. .
T Consensus 232 ~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~----~~~~i~~~g~i~~Lv~lL--~~~~~~v~~~al~aL~nl~~~~ 305 (510)
T 3ul1_B 232 QILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE----RIEMVVKKGVVPQLVKLL--GATELPIVTPALRAIGNIVTGT 305 (510)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH----HHHHHHTTTCHHHHHHHH--TCSCHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhh----hHHHHHhcccchhhhhhh--cCCChhhhhHHHHHHHHhhcCC
Confidence 3566677777777777777777777666542110 11111110 2222222 22445555555555665443 4
Q ss_pred HHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhchhhH
Q 021148 155 QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKL 234 (316)
Q Consensus 155 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQSLKL 234 (316)
+..+..++....+..+...++.++=+|-..|..++..+...........+..+ .+...- .++.++++-+|+.+...
T Consensus 306 ~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g---~i~~Lv-~lL~~~~~~v~~~Aa~a 381 (510)
T 3ul1_B 306 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG---LVPFLV-GVLSKADFKTQKEAAWA 381 (510)
T ss_dssp HHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHH-HHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcC---CHHHHH-HHHcCCCHHHHHHHHHH
Confidence 56677788887788888888999999999999999998877766666666655 444553 78899999999999999
Q ss_pred HHHHhccCCcHHHHHHhhcChhhHHHHHHHhccCC
Q 021148 235 LGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 235 LgelLLdr~N~~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
|+.+......-. .+|+-+..-++.++.||+++.
T Consensus 382 L~Nl~~~~~~~~--~~~L~~~g~i~~L~~LL~~~d 414 (510)
T 3ul1_B 382 ITNYTSGGTVEQ--IVYLVHCGIIEPLMNLLSAKD 414 (510)
T ss_dssp HHHHHHHCCHHH--HHHHHHTTCHHHHHHGGGCSC
T ss_pred HHHHHccCCHHH--HHHHHHCCCHHHHHHHhcCCC
Confidence 999886543322 345666677888888888766
No 26
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=72.06 E-value=53 Score=32.73 Aligned_cols=152 Identities=10% Similarity=0.154 Sum_probs=93.7
Q ss_pred chHHHHHhcCCCC--ChhhhhhHHHHHHHHhhhccCCCccchhhhhcC-hhHHHHHHHhcCCc----hhhHhHHHHHHHH
Q 021148 79 NTLRLLITCLPKL--NLEARKDATQVVANLQRQQVHSKLIASDYLEAN-IDLLDILIAGYENT----DMALHYGAMLREC 151 (316)
Q Consensus 79 dll~~Li~~L~~L--~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~-peil~~Ll~gY~~~----dial~~G~mLREc 151 (316)
+++..|+..+..= +.+.|+.+..++..+...-. .+.+..+ +.++..+..+..++ ++-..+-..|..+
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~------~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~ 201 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID------PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNS 201 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC------HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC------HhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Confidence 4677888777665 67788888888888876421 1223333 78888888887654 3333333444444
Q ss_pred HHH-H-HHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehh
Q 021148 152 IRH-Q-SVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRR 229 (316)
Q Consensus 152 ir~-e-~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkR 229 (316)
+.+ + .+......+..+..+++.++.++.++..-|+..+..+...+++....++.. .++...- ..+.+++--+++
T Consensus 202 ~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~---~l~~~~~-~~~~~~~~~v~~ 277 (876)
T 1qgr_A 202 LEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGP---ALFAITI-EAMKSDIDEVAL 277 (876)
T ss_dssp GGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTT---THHHHHH-HHHTCSSHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHH-HHhcCCchHHHH
Confidence 332 0 000000000112233456677788999999999999999998877776652 2343332 445566667788
Q ss_pred chhhHHHHHhc
Q 021148 230 QAVKLLGDILL 240 (316)
Q Consensus 230 QSLKLLgelLL 240 (316)
+++.+|+.+.-
T Consensus 278 ~al~~l~~l~~ 288 (876)
T 1qgr_A 278 QGIEFWSNVCD 288 (876)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888863
No 27
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=71.56 E-value=62 Score=33.22 Aligned_cols=180 Identities=16% Similarity=0.127 Sum_probs=112.9
Q ss_pred HHHhhchHHHHHhcCCCCC-hhhhhhHHHHHHHHhhhccCCCccchhhhh-cC--hhHHHHHHHhc--------------
Q 021148 74 EFFRENTLRLLITCLPKLN-LEARKDATQVVANLQRQQVHSKLIASDYLE-AN--IDLLDILIAGY-------------- 135 (316)
Q Consensus 74 ei~~~dll~~Li~~L~~L~-fE~RKdv~~If~~llr~~~~~r~p~v~Yl~-~~--peil~~Ll~gY-------------- 135 (316)
.+...+.+..|+..|..=+ .+.|+.++....++-+... ....+. .. |.++..|-.+.
T Consensus 483 ~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~-----~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq 557 (780)
T 2z6g_A 483 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-----NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQ 557 (780)
T ss_dssp HHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHH-----HHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHH-----HHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccc
Confidence 4455677888888887655 3788888888888875221 112222 11 44444443332
Q ss_pred ------CCchhhHhHHHHHHHHHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHH
Q 021148 136 ------ENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYD 209 (316)
Q Consensus 136 ------~~~dial~~G~mLREcir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd 209 (316)
...++...+...|+.+.+++.....+.....+..+.+.+..++-+|..-|...+..+. .++.....+....
T Consensus 558 ~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~-~~~~~~~~i~~~g-- 634 (780)
T 2z6g_A 558 QFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEG-- 634 (780)
T ss_dssp CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH-TSHHHHHHHHHTT--
T ss_pred hhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHCC--
Confidence 1234444555667777777766666767778888889999999999888888888775 3454444433332
Q ss_pred HHHHHhhhhhccCCCceehhchhhHHHHHhccCCcHHHHHHhhcChhhHHHHHHHhccCC
Q 021148 210 WFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 210 ~Ff~~yn~~LL~S~NYVTkRQSLKLLgelLLdr~N~~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
....+ .+|+.++|--.|+.++..|+.+.-++..- +..+. ..+++-.++++..
T Consensus 635 -~i~~L-~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~-~~~~l-----~~~ll~~l~~~~~ 686 (780)
T 2z6g_A 635 -ATAPL-TELLHSRNEGVATYAAAVLFRMSEDKPQD-YKKRL-----SVELTSSLFRTEP 686 (780)
T ss_dssp -CHHHH-HHGGGCSCHHHHHHHHHHHHHHHTTSCTT-HHHHH-----HHHHHHHC-----
T ss_pred -CHHHH-HHHHcCCCHHHHHHHHHHHHHHHcCChHh-hhccc-----cHHHHHHHHhCCC
Confidence 23344 37899999999999999999999888722 22221 4455555666554
No 28
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=70.49 E-value=25 Score=32.79 Aligned_cols=177 Identities=13% Similarity=0.097 Sum_probs=108.2
Q ss_pred hhchHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhh-cC-hhHHHHHHHhcCCchhhHhHHHHHHHHHHH
Q 021148 77 RENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLE-AN-IDLLDILIAGYENTDMALHYGAMLRECIRH 154 (316)
Q Consensus 77 ~~dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~-~~-peil~~Ll~gY~~~dial~~G~mLREcir~ 154 (316)
..+.+..|+..|..=+.+.|..+.....++-....+ ...-+. .. .+.+..+++..+..+..-.++..|+....+
T Consensus 141 ~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~----~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 216 (529)
T 1jdh_A 141 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE----SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 216 (529)
T ss_dssp HHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH----HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHH----HHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC
Confidence 467788888888775555555555555555431111 111111 11 233334455556666666777888877777
Q ss_pred HHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhchhhH
Q 021148 155 QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKL 234 (316)
Q Consensus 155 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQSLKL 234 (316)
+.....+...+.+..+.+.++.++=++...|..++..+-...+.. ..........- +|+.+++--++..+...
T Consensus 217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~------~~~~~~i~~L~-~ll~~~~~~v~~~a~~~ 289 (529)
T 1jdh_A 217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ------EGMEGLLGTLV-QLLGSDDINVVTCAAGI 289 (529)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC------SCCHHHHHHHH-HHTTCSCHHHHHHHHHH
T ss_pred cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh------HHHHhHHHHHH-HHHcCCCHHHHHHHHHH
Confidence 777777777777888888888777777777777777654432211 11234555663 78888888889999999
Q ss_pred HHHHhccCCcHHHHHHhhcChhhHHHHHHHhcc
Q 021148 235 LGDILLDRSNSVVMTRYVSSRENLRILMNLLRV 267 (316)
Q Consensus 235 LgelLLdr~N~~vM~rYIs~~eNLKl~M~LL~d 267 (316)
|+.|-.. +... ...+.+..-+..++.+|++
T Consensus 290 L~~L~~~--~~~~-~~~~~~~~~v~~L~~ll~~ 319 (529)
T 1jdh_A 290 LSNLTCN--NYKN-KMMVCQVGGIEALVRTVLR 319 (529)
T ss_dssp HHHHTTT--CHHH-HHHHHHTTHHHHHHHHHHH
T ss_pred HHHHhcC--CHHH-HHHHHHcCChHHHHHHHHc
Confidence 9998643 2222 2223344566677777765
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=69.26 E-value=91 Score=30.68 Aligned_cols=179 Identities=16% Similarity=0.121 Sum_probs=119.6
Q ss_pred HHhhchHHHHHhcCCCCC-hhhhhhHHHHHHHHhhhccCCCccchhhhhc-C--hhHHHHHHHhc---------------
Q 021148 75 FFRENTLRLLITCLPKLN-LEARKDATQVVANLQRQQVHSKLIASDYLEA-N--IDLLDILIAGY--------------- 135 (316)
Q Consensus 75 i~~~dll~~Li~~L~~L~-fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~-~--peil~~Ll~gY--------------- 135 (316)
+...+.+..|+..|..=. .+.|+.++....++..... ....+.. . |.++..|-.+.
T Consensus 348 v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~-----~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~ 422 (644)
T 2z6h_A 348 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-----NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ 422 (644)
T ss_dssp HHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-----GHHHHHHTTHHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH-----HHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccch
Confidence 455678888888887653 6788999888888875221 1122221 1 34444443321
Q ss_pred -----CCchhhHhHHHHHHHHHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHH
Q 021148 136 -----ENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDW 210 (316)
Q Consensus 136 -----~~~dial~~G~mLREcir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~ 210 (316)
...++...+-..|+.+.+++.....+.....+..+.+++..++-+|..-|...+..+. .++.....+....
T Consensus 423 ~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~i~~~g--- 498 (644)
T 2z6h_A 423 FVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEG--- 498 (644)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHH-TSHHHHHHHHHTT---
T ss_pred hcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCHHHHHHHHHcC---
Confidence 2344555666677888888876666767778888889999999999888888888865 4555443333332
Q ss_pred HHHHhhhhhccCCCceehhchhhHHHHHhccCCcHHHHHHhhcChhhHHHHHHHhccCC
Q 021148 211 FFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 211 Ff~~yn~~LL~S~NYVTkRQSLKLLgelLLdr~N~~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
-.... ..|+.++|--+|..+...|+.+.-++. .....+. -+.++..++++..
T Consensus 499 ~l~~L-~~ll~~~~~~vr~~A~~aL~~l~~~~~-~~~~~~~-----~~~il~~~~~~~~ 550 (644)
T 2z6h_A 499 ATAPL-TELLHSRNEGVATYAAAVLFRMSEDKP-QDYKKRL-----SVELTSSLFRTEP 550 (644)
T ss_dssp CHHHH-HHHTTCSCHHHHHHHHHHHHHHTTTSC-HHHHHHH-----HHHHHHHHSCCSC
T ss_pred ChhHH-HHHHcCCCHHHHHHHHHHHHHHhccCc-Hhhhccc-----chHHHHHHHhCCC
Confidence 23345 378999999999999999999987774 2222222 2677888888775
No 30
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=67.91 E-value=1.2e+02 Score=31.65 Aligned_cols=152 Identities=16% Similarity=0.251 Sum_probs=94.8
Q ss_pred HHHHHHHHhhhccCCCCCC-------cHHHHHHHHHHHH-hhchHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCcc
Q 021148 45 CKNIRELKSILYGNSESEP-------VSEACAQLTAEFF-RENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLI 116 (316)
Q Consensus 45 sK~L~~mK~il~G~~e~ep-------~~e~~~qLa~ei~-~~dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p 116 (316)
.-.|..+-.++.++++.+. ..|...+++.++. +.+-+..|+..|..=+|..|--+.++...|++.+...
T Consensus 80 ~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~--- 156 (651)
T 3grl_A 80 GYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQ--- 156 (651)
T ss_dssp HHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHH---
T ss_pred HHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHH---
Confidence 3345555556666554321 1233456777774 4578999999999999999999999999999744321
Q ss_pred chhhhhcChhHHHHHHHhcCCc-hhhHhHHH-HHHHHHH-HHHHHHHHhcchhhHhhhhhccCCCc----hhhhhHHHHH
Q 021148 117 ASDYLEANIDLLDILIAGYENT-DMALHYGA-MLRECIR-HQSVARYVLESQHMKKFFDYIQLPNF----DIAADAAATF 189 (316)
Q Consensus 117 ~v~Yl~~~peil~~Ll~gY~~~-dial~~G~-mLREcir-~e~la~~iL~~~~f~~fF~yv~~~~F----diasDAf~Tf 189 (316)
+=+++...|.-+..|+.--+++ |+.=+-+. +|-+..+ +..+-+++=.-.-|.++|+-++...- .|..|++..+
T Consensus 157 ~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll 236 (651)
T 3grl_A 157 VQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILL 236 (651)
T ss_dssp HHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHH
Confidence 3566777888888888776654 22211111 1222222 23333444343567888887765555 7888999999
Q ss_pred HHHHhhChHH
Q 021148 190 KELLTRHKST 199 (316)
Q Consensus 190 kelLt~Hk~l 199 (316)
..||..+.+-
T Consensus 237 ~nLLr~N~sN 246 (651)
T 3grl_A 237 QNLLKNNNSN 246 (651)
T ss_dssp HHHHTTCHHH
T ss_pred HHHHhcCHHH
Confidence 9999876533
No 31
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=67.56 E-value=1.3e+02 Score=31.83 Aligned_cols=187 Identities=11% Similarity=0.097 Sum_probs=114.9
Q ss_pred HHHHHHHHHhhchHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcC---hhHHHHHHHhcCCchhhHhH
Q 021148 68 CAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEAN---IDLLDILIAGYENTDMALHY 144 (316)
Q Consensus 68 ~~qLa~ei~~~dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~---peil~~Ll~gY~~~dial~~ 144 (316)
+..-++.+...+.++.|+..|..=+-+.|+.++.+..|+-..+ ...+.+..+ |-++..|-.|.... --.-+
T Consensus 484 v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~-----~~r~~Vv~~Gaip~Lv~LL~s~~~~~-k~~Aa 557 (810)
T 3now_A 484 INKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK-----ELRGKVVQEGGVKALLRMALEGTEKG-KRHAT 557 (810)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH-----HHHHHHHHTTHHHHHHHHHHSSCHHH-HHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-----HHHHHHHHCCCHHHHHHHHccCCHHH-HHHHH
Confidence 3333478899999999999999888899999999999996421 234555543 55666665553210 01111
Q ss_pred HHHHHHHHHHHHHHHHHhc----chhhHhhhhhccCCCc-hhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhh
Q 021148 145 GAMLRECIRHQSVARYVLE----SQHMKKFFDYIQLPNF-DIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKL 219 (316)
Q Consensus 145 G~mLREcir~e~la~~iL~----~~~f~~fF~yv~~~~F-diasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~L 219 (316)
..+-+=|+-.++ ..++. .+.+-.+.+.++.+.- ....+|...+.-|.+.........+... .+...- .|
T Consensus 558 ~AL~nL~~~~~p--~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG---~l~~Lv-~L 631 (810)
T 3now_A 558 QALARIGITINP--EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQ---GVSKIE-YY 631 (810)
T ss_dssp HHHHHHHHHSCH--HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHH-HH
T ss_pred HHHHHHhcCCCh--hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcC---CHHHHH-HH
Confidence 222222221111 01110 0123344444443322 2234677777776665544444444433 455663 78
Q ss_pred ccCCCceehhchhhHHHHHhccCCcHHHHHHhhcChhhHHHHHHHhccCC
Q 021148 220 LESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 220 L~S~NYVTkRQSLKLLgelLLdr~N~~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
+.|+|--.++.++.+|+.|...+ ....+++.+..-++.+..||.+++
T Consensus 632 L~s~~~~Vq~~A~~~L~NLa~~~---~~~~~~v~~~g~l~~Lv~LL~s~d 678 (810)
T 3now_A 632 LMEDHLYLTRAAAQCLCNLVMSE---DVIKMFEGNNDRVKFLALLCEDED 678 (810)
T ss_dssp HHSCCTTHHHHHHHHHHHHTTSH---HHHHHHHSSSSHHHHHHHGGGCSS
T ss_pred HcCCCHHHHHHHHHHHHHHhCCh---HHHHHHHhccCcHHHHHHHhcCCC
Confidence 88999999999999999999754 466778866788999999998866
No 32
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=66.96 E-value=92 Score=29.88 Aligned_cols=188 Identities=10% Similarity=0.118 Sum_probs=112.4
Q ss_pred HHHHhhchHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcC--hhHHHHHHHhcCCchhhHhHHHHHHH
Q 021148 73 AEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEAN--IDLLDILIAGYENTDMALHYGAMLRE 150 (316)
Q Consensus 73 ~ei~~~dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~--peil~~Ll~gY~~~dial~~G~mLRE 150 (316)
+.+...+.+..|+..|..=+-+.+..+.....++...... ....+... -..+..|+. -.++++--.+-..|..
T Consensus 268 ~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~----~~~~i~~~g~l~~L~~LL~-~~~~~v~~~A~~aL~n 342 (510)
T 3ul1_B 268 EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE----QTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSN 342 (510)
T ss_dssp HHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH----HHHHHHHTTGGGGCC-CTT-CSSHHHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHH----HHHHHhhccchHHHHHHhc-CCCHHHHHHHHHHHHH
Confidence 3456778888898888888888888777777777642210 01111100 000111111 1223333333344444
Q ss_pred HHH-HHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhCh-HHHHHHHHhcHHHHHHHhhhhhccCCCceeh
Q 021148 151 CIR-HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHK-STVAEFLSKNYDWFFAEYNSKLLESSNYITR 228 (316)
Q Consensus 151 cir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk-~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTk 228 (316)
+.. .+.....+.....+..+.+.++.+++++-..|..++.-+..... ..+......+ ....+ ..||.+++-=+.
T Consensus 343 l~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g---~i~~L-~~LL~~~d~~i~ 418 (510)
T 3ul1_B 343 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG---IIEPL-MNLLSAKDTKII 418 (510)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTT---CHHHH-HHGGGCSCHHHH
T ss_pred HHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCC---CHHHH-HHHhcCCCHHHH
Confidence 333 45556667777778888889999999999999888888766432 2233333333 23334 268888887788
Q ss_pred hchhhHHHHHhc---cCCcHHHHHHhhcChhhHHHHHHHhccCC
Q 021148 229 RQAVKLLGDILL---DRSNSVVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 229 RQSLKLLgelLL---dr~N~~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
+.+|.-|..|+- .-.+.+-+.++|.+..-++.+=.|..+++
T Consensus 419 ~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n 462 (510)
T 3ul1_B 419 QVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHEN 462 (510)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSS
T ss_pred HHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCC
Confidence 888888888773 11234455666777777777777766665
No 33
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=63.79 E-value=1.2e+02 Score=30.11 Aligned_cols=173 Identities=13% Similarity=0.126 Sum_probs=100.2
Q ss_pred hHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhc--CCchhhHhHHHHHHHHHHHHHH
Q 021148 80 TLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLRECIRHQSV 157 (316)
Q Consensus 80 ll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY--~~~dial~~G~mLREcir~e~l 157 (316)
++..+...+..-+.+.|+.+..++..+....... ...|+. ++++..++.+. +++++...+-..+..+++.+.-
T Consensus 218 il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~--~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~ 292 (876)
T 1qgr_A 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY---METYMG--PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD 292 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG---CHHHHT--TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH---HHHHHH--HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHh
Confidence 5666666777778889999999999888754321 123432 46777777654 4456677666666666665421
Q ss_pred ----------------------HHHHhcchhhHhhhhhcc-------CCCchhhhhHHHHHHHHHhhChHHHHHHHHhcH
Q 021148 158 ----------------------ARYVLESQHMKKFFDYIQ-------LPNFDIAADAAATFKELLTRHKSTVAEFLSKNY 208 (316)
Q Consensus 158 ----------------------a~~iL~~~~f~~fF~yv~-------~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Ny 208 (316)
.+..+ .+.+-.+++.+. ..++.+...|...+..+-..-.. .-.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-------~~~ 364 (876)
T 1qgr_A 293 LAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-------DIV 364 (876)
T ss_dssp HHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-------GGH
T ss_pred HhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH-------hhH
Confidence 00000 011112223321 23444444444444444322111 123
Q ss_pred HHHHHHhhhhhccCCCceehhchhhHHHHHhccCCcHHHHHHhhcChhhHHHHHHHhccCC
Q 021148 209 DWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 209 d~Ff~~yn~~LL~S~NYVTkRQSLKLLgelLLdr~N~~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
+.++.... ..+.+++.-.|..++..||.+.-.-. -..+..|+ +.-+..+..+|+|++
T Consensus 365 ~~~l~~l~-~~l~~~~~~~r~~a~~~l~~i~~~~~-~~~~~~~~--~~~l~~l~~~l~d~~ 421 (876)
T 1qgr_A 365 PHVLPFIK-EHIKNPDWRYRDAAVMAFGCILEGPE-PSQLKPLV--IQAMPTLIELMKDPS 421 (876)
T ss_dssp HHHHHHHH-HHTTCSSHHHHHHHHHHHHHTSSSSC-HHHHHHHH--HHHHHHHHHHHTCSS
T ss_pred HHHHHHHH-HHccCCChHHHHHHHHHHHHHHcCCC-HHHHHHHH--HHHHHHHHHHhCCCC
Confidence 45565664 67889999999999999999874322 13344555 446777788888887
No 34
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=58.20 E-value=22 Score=33.85 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=42.8
Q ss_pred hchHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhh-cChhHHHHHHHh
Q 021148 78 ENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLE-ANIDLLDILIAG 134 (316)
Q Consensus 78 ~dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~-~~peil~~Ll~g 134 (316)
.++|..|+ +...+|.+.|.-++.|.+.+|| +.+|+++++. .+|..+..++..
T Consensus 70 f~lL~nL~-~~~~~~~~~rE~aarII~ssLR----NNP~Al~~V~~~~p~fv~~lf~~ 122 (315)
T 3qml_C 70 FALLANLS-LNENLPLTLRELSTRVITSCLR----NNPPVVEFINESFPNFKSKIMAA 122 (315)
T ss_dssp HHHHHHHH-HCTTSCHHHHHHHHHHHHHHHT----TCHHHHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHHH-hhccCChhHHHHHHHHHHHHHc----cCHHHHHHHHHhChhHHHHHHHH
Confidence 36777777 5555999999999999999999 4568899997 579999999854
No 35
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=57.98 E-value=85 Score=26.51 Aligned_cols=163 Identities=10% Similarity=0.133 Sum_probs=96.2
Q ss_pred HHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhcC-CchhhH------hHHHHHHHHHHHHH
Q 021148 84 LITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYE-NTDMAL------HYGAMLRECIRHQS 156 (316)
Q Consensus 84 Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY~-~~dial------~~G~mLREcir~e~ 156 (316)
+...+..=+|..|+.+..-...++.... +... ....+++..|...-. +++... ..|.+.+. ++. .
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~--~~~~----~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~-l~~-~ 91 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHP--KLEN----GEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG-LAK-R 91 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCS--SBCC----CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH-HGG-G
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCC--CCCC----CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH-Hhh-h
Confidence 3344556788889988888888876411 1111 123577777766663 444332 12222211 110 0
Q ss_pred HHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhchhhHHH
Q 021148 157 VARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLG 236 (316)
Q Consensus 157 la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQSLKLLg 236 (316)
+..++ ...+-.+++.+.-++=.|..-|..++..+.... +++.+....- ..+.+.|.-+|.+++.+|+
T Consensus 92 ~~~~~--~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~----------~~~~ll~~l~-~~l~~~~~~vr~~~l~~l~ 158 (242)
T 2qk2_A 92 FSNYA--SACVPSLLEKFKEKKPNVVTALREAIDAIYAST----------SLEAQQESIV-ESLSNKNPSVKSETALFIA 158 (242)
T ss_dssp GHHHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS----------CHHHHHHHHH-HHTTCSCHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC----------CHHHHHHHHH-HHHcCCChHHHHHHHHHHH
Confidence 00100 012334445556667778788888888877632 3566777774 7788999999999999999
Q ss_pred HHhccCCcHHHHHHhhcChhhHHHHHHHhccCC
Q 021148 237 DILLDRSNSVVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 237 elLLdr~N~~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
.++..-..-..+..|+ +.-+..++.+|.|+.
T Consensus 159 ~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~ 189 (242)
T 2qk2_A 159 RALTRTQPTALNKKLL--KLLTTSLVKTLNEPD 189 (242)
T ss_dssp HHHTTCCGGGCCHHHH--HHHHHHHHHHHTSSC
T ss_pred HHHHHcCCCCccHHHH--HHHHHHHHHHhcCCC
Confidence 9885422223444555 356677778887776
No 36
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=57.56 E-value=96 Score=29.77 Aligned_cols=140 Identities=14% Similarity=0.227 Sum_probs=104.4
Q ss_pred HHHHHHHhhchHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhcCCc-------hhhH
Q 021148 70 QLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENT-------DMAL 142 (316)
Q Consensus 70 qLa~ei~~~dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY~~~-------dial 142 (316)
.+|.-+..++.+..+...+..=.||.--|+-..|.-++-+.. ..+.+||.+|-+-++....+-=.. ..-=
T Consensus 155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk---~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHK---LLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSH---HHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccH---HHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 344555555666778888888899999999999999997533 356899999887666554433222 2333
Q ss_pred hHHHHHHHHHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhh-Ch-HHHHHHHHhcHHHHH
Q 021148 143 HYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTR-HK-STVAEFLSKNYDWFF 212 (316)
Q Consensus 143 ~~G~mLREcir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~-Hk-~lvaefl~~Nyd~Ff 212 (316)
..|.+|-+=.-+....+||-..+.+.-+...+..++=-|.-+||..||--..+ || +-|.+.|..|=++..
T Consensus 232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl 303 (341)
T 1upk_A 232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLI 303 (341)
T ss_dssp HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHH
T ss_pred HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHH
Confidence 45777777667788888888888888888889999999999999999976654 33 677799999877643
No 37
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=57.41 E-value=57 Score=35.15 Aligned_cols=81 Identities=19% Similarity=0.201 Sum_probs=61.3
Q ss_pred CCchhhHhHHHHHHHHHHHHHHHHHHhcchhhHhhhhhc----cCCCchhhhhHHHHHHHHHhh-----ChHHHHHHHHh
Q 021148 136 ENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYI----QLPNFDIAADAAATFKELLTR-----HKSTVAEFLSK 206 (316)
Q Consensus 136 ~~~dial~~G~mLREcir~e~la~~iL~~~~f~~fF~yv----~~~~FdiasDAf~TfkelLt~-----Hk~lvaefl~~ 206 (316)
++||.-...=.+||.++.|=.-+=.-+-++.|..+++.+ ..+.-||+.-+..++.+++.+ ....+.+|..+
T Consensus 816 ~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~~~ 895 (1023)
T 4hat_C 816 EYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKN 895 (1023)
T ss_dssp SSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 579988888888998888733322223344888888854 789999999999999999973 23467799998
Q ss_pred cHHHHHHHhh
Q 021148 207 NYDWFFAEYN 216 (316)
Q Consensus 207 Nyd~Ff~~yn 216 (316)
.|-.++.+.-
T Consensus 896 ~~~~~~~~~~ 905 (1023)
T 4hat_C 896 YFFIFVSETF 905 (1023)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888866643
No 38
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=56.86 E-value=47 Score=28.20 Aligned_cols=151 Identities=12% Similarity=0.149 Sum_probs=104.9
Q ss_pred CCChhhhhhHHHHHHHHhhhccCCCccchhhhh-cChhHHHHHHHhcCCc--hhhHhHHHHHHHHHHHHHHHHHHhcchh
Q 021148 90 KLNLEARKDATQVVANLQRQQVHSKLIASDYLE-ANIDLLDILIAGYENT--DMALHYGAMLRECIRHQSVARYVLESQH 166 (316)
Q Consensus 90 ~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~-~~peil~~Ll~gY~~~--dial~~G~mLREcir~e~la~~iL~~~~ 166 (316)
.-+...|+.+...+..+.+.- +. .+. ..+.++..|+....++ .+--.+..-|+.|+..-.+ ++.
T Consensus 68 d~~~~V~~~a~~~l~~la~~l-~~------~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~l 134 (242)
T 2qk2_A 68 DSNVVLVAMAGKCLALLAKGL-AK------RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQ 134 (242)
T ss_dssp CSCHHHHHHHHHHHHHHHHHH-GG------GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH-hh------hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHH
Confidence 456667888888888887532 21 222 2377888898888764 4556677777777664332 123
Q ss_pred hHhhhhhccCCCchhhhhHHHHHHHHHhhCh-H-HHHHHHHhcHHHHHHHhhhhhccCCCceehhchhhHHHHHhccCCc
Q 021148 167 MKKFFDYIQLPNFDIAADAAATFKELLTRHK-S-TVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSN 244 (316)
Q Consensus 167 f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk-~-lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQSLKLLgelLLdr~N 244 (316)
+-.+..+++..+-.+-..+...+..++.+|. . ....+ ++.+....- .++..+++-.|..+...||.+...=.
T Consensus 135 l~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~----l~~l~p~l~-~~l~D~~~~VR~~A~~~l~~l~~~vg- 208 (242)
T 2qk2_A 135 QESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKL----LKLLTTSLV-KTLNEPDPTVRDSSAEALGTLIKLMG- 208 (242)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHH----HHHHHHHHH-HHHTSSCHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHH----HHHHHHHHH-HHhcCCChHHHHHHHHHHHHHHHHcC-
Confidence 4456677888899999999999999999884 2 23333 456666663 88999999999999999999874322
Q ss_pred HHHHHHhhcChhhHH
Q 021148 245 SVVMTRYVSSRENLR 259 (316)
Q Consensus 245 ~~vM~rYIs~~eNLK 259 (316)
...+..|+.+-+..+
T Consensus 209 ~~~~~~~l~~L~~~~ 223 (242)
T 2qk2_A 209 DKAVTPLLADVDPLK 223 (242)
T ss_dssp HHHHGGGGTTSCHHH
T ss_pred HHHHHHHHHhcCHHH
Confidence 356778887655443
No 39
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=56.69 E-value=1.3e+02 Score=28.37 Aligned_cols=169 Identities=13% Similarity=0.141 Sum_probs=101.6
Q ss_pred hHHHHHhcCCCCChhhhh-hHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHh---------cCCchhhHhHHHHHH
Q 021148 80 TLRLLITCLPKLNLEARK-DATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAG---------YENTDMALHYGAMLR 149 (316)
Q Consensus 80 ll~~Li~~L~~L~fE~RK-dv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~g---------Y~~~dial~~G~mLR 149 (316)
++...+..-..-.-++|- .|-.+++.+.++=.+.= .++ =|.|++.+..+ .+.||.-...=.+||
T Consensus 74 Ll~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i---~~~---vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ 147 (321)
T 1w9c_A 74 LLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHI---TAE---IPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQ 147 (321)
T ss_dssp HHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGG---GGG---HHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHh---hhh---HHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHH
Confidence 333333333333444554 34445555554332221 111 17777776433 478999999999999
Q ss_pred HHHHHHHHHHHHhcchhhHhhhhh----ccCCCchhhhhHHHHHHHHHhh---ChHHHHHHHHhcHHHHHHHhhhhhccC
Q 021148 150 ECIRHQSVARYVLESQHMKKFFDY----IQLPNFDIAADAAATFKELLTR---HKSTVAEFLSKNYDWFFAEYNSKLLES 222 (316)
Q Consensus 150 Ecir~e~la~~iL~~~~f~~fF~y----v~~~~FdiasDAf~TfkelLt~---Hk~lvaefl~~Nyd~Ff~~yn~~LL~S 222 (316)
.|..|---+=.-|..++|..+.+- ++.+.-+||--+..++.++|.+ +...+.+|..+.|-....+.=.-|-.+
T Consensus 148 ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs 227 (321)
T 1w9c_A 148 AVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDT 227 (321)
T ss_dssp HHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999883333333677788888875 4799999999999999999985 455666887777777666653222222
Q ss_pred CCceehhchhhHHHHHh-----------c-cC---CcHHHHHHhhcC
Q 021148 223 SNYITRRQAVKLLGDIL-----------L-DR---SNSVVMTRYVSS 254 (316)
Q Consensus 223 ~NYVTkRQSLKLLgelL-----------L-dr---~N~~vM~rYIs~ 254 (316)
..=..=+.-..+|..|+ + +. +|...++.|+++
T Consensus 228 ~Hk~gF~~q~~iL~~lf~~ve~~~i~~pl~~~~~~~n~~~v~~~l~~ 274 (321)
T 1w9c_A 228 SHTAGLTMHASILAYMFNLVEEGKISTSLNPGNPVNNQIFLQEYVAN 274 (321)
T ss_dssp SCCTTHHHHHHHHHHHHHHHHTTCCCSCSCSSSCCCHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHHHcCccccccCCCCCcccHHHHHHHHHH
Confidence 21111122234555555 1 21 377777777765
No 40
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=56.08 E-value=1.8e+02 Score=29.71 Aligned_cols=125 Identities=10% Similarity=0.018 Sum_probs=72.4
Q ss_pred hhHHHHHHHhcCC---chhhHhHHHHHHHHHHHH---HHHHHHhcchhhHhhhhhcc--C-CCchhhhhHHHHHHHHHhh
Q 021148 125 IDLLDILIAGYEN---TDMALHYGAMLRECIRHQ---SVARYVLESQHMKKFFDYIQ--L-PNFDIAADAAATFKELLTR 195 (316)
Q Consensus 125 peil~~Ll~gY~~---~dial~~G~mLREcir~e---~la~~iL~~~~f~~fF~yv~--~-~~FdiasDAf~TfkelLt~ 195 (316)
|.++..++.+|.+ +..--..|.++++.-..+ +...-++. ..+...+.-++ . ..=|+.-++|.-+..++..
T Consensus 725 ~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~ 803 (963)
T 2x19_B 725 PQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKR 803 (963)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHh
Confidence 7778888888864 333334455555432221 11111111 11112221111 1 2347888999999999988
Q ss_pred ChHHHHHHHHhc-HHHHHHHhhhhhccCCCceehhchhhHHHHHhccCCcHHHHHHhhc
Q 021148 196 HKSTVAEFLSKN-YDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVS 253 (316)
Q Consensus 196 Hk~lvaefl~~N-yd~Ff~~yn~~LL~S~NYVTkRQSLKLLgelLLdr~N~~vM~rYIs 253 (316)
++..+-. ... ++.++...- ..+.+++.-+.|.+++.|.+++..-.+......++.
T Consensus 804 ~~~~~~~--~~~~~~~i~~~~~-~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~ 859 (963)
T 2x19_B 804 KPDLFLC--ERLDVKAVFQCAV-LALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQ 859 (963)
T ss_dssp CGGGGGC--TTSCHHHHHHHHH-HHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTT
T ss_pred CcHHHcC--CcccHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 8865421 222 677777764 677889999999999999999965332234444443
No 41
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=55.65 E-value=33 Score=31.12 Aligned_cols=142 Identities=8% Similarity=-0.000 Sum_probs=75.4
Q ss_pred CChhhhhhHHHHHHHHhhhccCCCccch--hh--h--hcChhHHHHHHHhcC--CchhhHhHHHHHHHHHHHHHHHHHHh
Q 021148 91 LNLEARKDATQVVANLQRQQVHSKLIAS--DY--L--EANIDLLDILIAGYE--NTDMALHYGAMLRECIRHQSVARYVL 162 (316)
Q Consensus 91 L~fE~RKdv~~If~~llr~~~~~r~p~v--~Y--l--~~~peil~~Ll~gY~--~~dial~~G~mLREcir~e~la~~iL 162 (316)
.+.+.|.-++.++.+++++.-..+..-+ .| + ..+..|-..|+.+-. ++.+ -..+..|-+..+++.-.. -
T Consensus 49 ~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~--~ 125 (462)
T 1ibr_B 49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN--Q 125 (462)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT--C
T ss_pred CChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc--c
Confidence 4566666666666666543210000000 01 1 112334444444332 3445 555666665555541100 1
Q ss_pred cchhhHhhhhhccCC--CchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCC--CceehhchhhHHHHH
Q 021148 163 ESQHMKKFFDYIQLP--NFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESS--NYITRRQAVKLLGDI 238 (316)
Q Consensus 163 ~~~~f~~fF~yv~~~--~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~--NYVTkRQSLKLLgel 238 (316)
+.+.+-.+++.++.+ +.++---|+.++..+..... .+.+..+.+.++..+. +++.++ +--.|+.+++-|+.+
T Consensus 126 w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~---~~~~~~~~~~ll~~l~-~~l~~~~~~~~vr~~a~~~l~~~ 201 (462)
T 1ibr_B 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID---PEQLQDKSNEILTAII-QGMRKEEPSNNVKLAATNALLNS 201 (462)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC---GGGTGGGHHHHHHHHH-HHHSTTCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCC---chhhHhHHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHH
Confidence 122334455566666 66777778888888776431 1224455566777774 677776 677788899988886
Q ss_pred h
Q 021148 239 L 239 (316)
Q Consensus 239 L 239 (316)
+
T Consensus 202 ~ 202 (462)
T 1ibr_B 202 L 202 (462)
T ss_dssp T
T ss_pred H
Confidence 5
No 42
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=54.69 E-value=1.1e+02 Score=29.13 Aligned_cols=102 Identities=13% Similarity=0.205 Sum_probs=57.6
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhc--hHHHHHh
Q 021148 9 PRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFREN--TLRLLIT 86 (316)
Q Consensus 9 ~ktP~elVr~l~e~l~~L~~~~~~~~~K~~~k~eeisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~d--ll~~Li~ 86 (316)
.++|+++|+.+++.. .+ +.+.+.|..++..|-. .|. ...+++...+ .|..++.
T Consensus 65 ~~sP~~yi~~L~~~~---------~~-------~kl~~~L~sL~v~Lrt----~~~-----sWV~~F~~~Gl~~Ll~iL~ 119 (383)
T 3eg5_B 65 SRSAMMYIQELRSGL---------RD-------MHLLSCLESLRVSLTS----HPV-----SWVQTFGAEGLASLLDILK 119 (383)
T ss_dssp CCCHHHHHHHHTTTC---------CH-------HHHHHHHHHHHHHHHH----SCH-----HHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcc---------cc-------hhHHHHHHHHHHHHhh----Ccc-----HHHHHHHHccHHHHHHHHH
Confidence 578999998886421 11 2345677777777752 222 2344444333 2333333
Q ss_pred cCC--------CCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhcCCchh
Q 021148 87 CLP--------KLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDM 140 (316)
Q Consensus 87 ~L~--------~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY~~~di 140 (316)
.+. .-+.+-.-.+...+..++..+. ..+++.+||+.+..|..+-+.+..
T Consensus 120 ~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~-----G~~~vl~~~~~i~~l~~~L~s~~~ 176 (383)
T 3eg5_B 120 RLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKF-----GIKTMLETEEGILLLVRAMDPAVP 176 (383)
T ss_dssp HHHTCC-------CHHHHHHHHHHHHHHTSSHH-----HHHHHHTCSSHHHHHHHTCCTTSH
T ss_pred HHhhccccccchhhHHHHHHHHHHHHHHhcchh-----hHHHHHcChHHHHHHHHHhCCCch
Confidence 221 1233333345566666666554 488888999999998888765544
No 43
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=53.40 E-value=1.4e+02 Score=31.49 Aligned_cols=188 Identities=16% Similarity=0.121 Sum_probs=120.3
Q ss_pred HHHHHhhchHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhcCCc-h-h-hHhHHHHH
Q 021148 72 TAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENT-D-M-ALHYGAML 148 (316)
Q Consensus 72 a~ei~~~dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY~~~-d-i-al~~G~mL 148 (316)
.+.+.+.+.+..|+..|..=+.+.|+.++...+++.+.... ..+-+...-.+++.-|+.--... + . -..+=.-|
T Consensus 529 r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p---~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL 605 (810)
T 3now_A 529 RGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP---EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMAL 605 (810)
T ss_dssp HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH---HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh---hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 44567778888888888887889999999888888763210 00000000012333333222211 1 1 01122234
Q ss_pred HHHHHH-HHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCcee
Q 021148 149 RECIRH-QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYIT 227 (316)
Q Consensus 149 REcir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVT 227 (316)
+-+..+ |.....+.+...+-.+.+++..++-.|-.-|..++..+.+ ++.....|.. +.+ -....- +|+.+++.-+
T Consensus 606 ~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~-~~~~~~~~v~-~~g-~l~~Lv-~LL~s~d~~v 681 (810)
T 3now_A 606 TNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM-SEDVIKMFEG-NND-RVKFLA-LLCEDEDEET 681 (810)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT-SHHHHHHHHS-SSS-HHHHHH-HGGGCSSHHH
T ss_pred HHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC-ChHHHHHHHh-ccC-cHHHHH-HHhcCCCHHH
Confidence 444444 5666677777778888888888899999999999988765 6666677773 222 234443 7899999999
Q ss_pred hhchhhHHHHHhccCCcHHHHHHhhcC-hhhHHHHHHHhccCC
Q 021148 228 RRQAVKLLGDILLDRSNSVVMTRYVSS-RENLRILMNLLRVRY 269 (316)
Q Consensus 228 kRQSLKLLgelLLdr~N~~vM~rYIs~-~eNLKl~M~LL~d~s 269 (316)
|+.+.-.|+.|-.. +-.. .++|-+ ..-+..+..||++.+
T Consensus 682 q~~Aa~ALanLt~~--s~~~-~~~ii~~~g~I~~Lv~LL~s~d 721 (810)
T 3now_A 682 ATACAGALAIITSV--SVKC-CEKILAIASWLDILHTLIANPS 721 (810)
T ss_dssp HHHHHHHHHHHHHH--CHHH-HHHHHTSTTHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHhCC--CHHH-HHHHHHHcCCHHHHHHHHCCCC
Confidence 99999999999852 1222 234444 778888889998877
No 44
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=52.85 E-value=2.2e+02 Score=29.59 Aligned_cols=102 Identities=10% Similarity=0.150 Sum_probs=63.2
Q ss_pred CChhhhhhHHHHHHHHhhhccCCC-----ccchhhhhcChhHHHHHHHhcCCchhhHhHHHHHHHHHHHHHHHHHHhcch
Q 021148 91 LNLEARKDATQVVANLQRQQVHSK-----LIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQ 165 (316)
Q Consensus 91 L~fE~RKdv~~If~~llr~~~~~r-----~p~v~Yl~~~peil~~Ll~gY~~~dial~~G~mLREcir~e~la~~iL~~~ 165 (316)
.+-+.|--++.++.|.+++.-..+ .|.-+.-.=+..++..|... .+.+....|..+...++++--.+ +.+
T Consensus 49 ~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~--~~~ir~~l~~~ia~ia~~d~p~~---Wp~ 123 (960)
T 1wa5_C 49 LPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISL--PNNLQVQIGEAISSIADSDFPDR---WPT 123 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHHSTTT---CTT
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhhCccc---hhH
Confidence 467788888888888887654321 11111111134556666553 46677777777777776643211 234
Q ss_pred hhHhhhhhccCCCchhhhhHHHHHHHHHhhCh
Q 021148 166 HMKKFFDYIQLPNFDIAADAAATFKELLTRHK 197 (316)
Q Consensus 166 ~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk 197 (316)
.+-.+++.++.++...--.|+.++.+++.+.+
T Consensus 124 ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~ 155 (960)
T 1wa5_C 124 LLSDLASRLSNDDMVTNKGVLTVAHSIFKRWR 155 (960)
T ss_dssp HHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777788889998887543
No 45
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=52.59 E-value=1.2e+02 Score=26.53 Aligned_cols=38 Identities=3% Similarity=0.066 Sum_probs=25.6
Q ss_pred hHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhcCCchh
Q 021148 98 DATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDM 140 (316)
Q Consensus 98 dv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY~~~di 140 (316)
.+...+..++..+ +..+++.+||+.+..|..+-+.+..
T Consensus 73 ~~l~CLkalmn~~-----~G~~~vl~~~~~i~~l~~~L~s~~~ 110 (233)
T 2f31_A 73 EIIRCLKAFMNNK-----FGIKTMLETEEGILLLVRAMDPAVP 110 (233)
T ss_dssp HHHHHHHHHTSSH-----HHHHHHHTSSSHHHHHHTTCCTTSH
T ss_pred HHHHHHHHHhCCh-----HHHHHHHcCcHHHHHHHHHhCCCCc
Confidence 3444444454444 4588888999999888888776555
No 46
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=51.37 E-value=1e+02 Score=29.38 Aligned_cols=174 Identities=13% Similarity=0.205 Sum_probs=86.9
Q ss_pred CCCChHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhchHHHHHhc
Q 021148 8 KPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITC 87 (316)
Q Consensus 8 ~~ktP~elVr~l~e~l~~L~~~~~~~~~K~~~k~eeisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~ 87 (316)
++.+|..+|+.+++.. . . +.+.+.|..++..|-..+ . .-.+++...+ +..|+..
T Consensus 2 ~~~~P~~yv~~L~~~~---------~-~------~~~~~~L~~L~v~Lrt~~----~-----~Wv~~F~~~G-l~~Ll~~ 55 (386)
T 2bnx_A 2 SSRSAMMYIQELRSGL---------R-D------MHLLSCLESLRVSLNNNP----V-----SWVQTFGAEG-LASLLDI 55 (386)
T ss_dssp -CCCHHHHHHHHTSCC---------C-H------HHHHHHHHHHHHHHHHSC----H-----HHHHHHHHHH-HHHHHHH
T ss_pred CCCCHHHHHHHHHhcc---------c-h------HHHHHHHHHHhHHHhcCC----c-----HHHHHHHHhH-HHHHHHH
Confidence 5789999999987521 0 0 235666777777775332 1 1333333332 2222222
Q ss_pred CCCC-----------ChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhcCCchhhHhH------------
Q 021148 88 LPKL-----------NLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHY------------ 144 (316)
Q Consensus 88 L~~L-----------~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY~~~dial~~------------ 144 (316)
|..+ +.+-.-.+...+..+++.+. ..+++..||+.+..|..+-+.+....-.
T Consensus 56 L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~-----Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~ 130 (386)
T 2bnx_A 56 LKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKF-----GIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCIL 130 (386)
T ss_dssp HHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHH-----HHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHHhCCHH-----HHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcC
Confidence 2221 11112233444444444443 4777778888777777776544332111
Q ss_pred ----H--HHHHHHHHHHHHHHHHhcchhhHhhhhhcc-CCCchhhhhHHHHHHHHHhhCh------HHHHHHHHhcHHHH
Q 021148 145 ----G--AMLRECIRHQSVARYVLESQHMKKFFDYIQ-LPNFDIAADAAATFKELLTRHK------STVAEFLSKNYDWF 211 (316)
Q Consensus 145 ----G--~mLREcir~e~la~~iL~~~~f~~fF~yv~-~~~FdiasDAf~TfkelLt~Hk------~lvaefl~~Nyd~F 211 (316)
| ..+-+.+.+-. . .=+...|+.+.+.+. ..+-|..+-++.-+..++..-+ .+-+||.....++.
T Consensus 131 ~~~~G~~~~VL~Al~~~~--~-~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~i 207 (386)
T 2bnx_A 131 PQPEDMNERVLEAMTERA--E-MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQV 207 (386)
T ss_dssp CSSTTHHHHHHHHHHHHH--H-HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHH
T ss_pred CCCCChHHHHHHHHHHHH--H-hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHH
Confidence 1 11222222211 1 113346777777665 4444555555655666655433 35667777666666
Q ss_pred HHHh
Q 021148 212 FAEY 215 (316)
Q Consensus 212 f~~y 215 (316)
+++.
T Consensus 208 l~~L 211 (386)
T 2bnx_A 208 LQEL 211 (386)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 47
>1ddb_A Protein (BID); apoptosis, programmed cell death, BCL-2 family, BH3 domain; NMR {Mus musculus} SCOP: f.1.4.1
Probab=50.77 E-value=11 Score=33.63 Aligned_cols=80 Identities=18% Similarity=0.325 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhc------------hHHHHHhcCCCCChhhhhhHHHHHHHH
Q 021148 39 DKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFREN------------TLRLLITCLPKLNLEARKDATQVVANL 106 (316)
Q Consensus 39 ~k~eeisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~d------------ll~~Li~~L~~L~fE~RKdv~~If~~l 106 (316)
+..-+|++.|.+|-.-+.+.. .|..+..|+..+-+.+ .+..|++..| -|+| +-.+..+++-+
T Consensus 81 e~ir~IA~qLa~igD~le~sI----~p~~v~~L~~~~~N~slsEEdrr~~LAaaleql~Qt~P-~dme-kEk~~L~lamL 154 (195)
T 1ddb_A 81 EIIHNIARHLAQIGDEMDHNI----QPTLVRQLAAQFMNGSLSEEDKRNCLAKALDEVKTAFP-RDME-NDKAMLIMTML 154 (195)
T ss_dssp CSHHHHHHHHHHHHHHHGGGC----CSSSHHHHHHHHCCSSSSSSSTTHHHHHHHHHHHHHSC-STHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc----CHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHcC-chHH-HHHHHHHHHHH
Confidence 345789999999999998743 3466777877776433 3678888888 7888 55678899999
Q ss_pred hhhccCCCccc---------hhhhhcC
Q 021148 107 QRQQVHSKLIA---------SDYLEAN 124 (316)
Q Consensus 107 lr~~~~~r~p~---------v~Yl~~~ 124 (316)
|-.++-+..|. |.||..|
T Consensus 155 LaKKVa~htPsLLrdVf~TTVnFInqN 181 (195)
T 1ddb_A 155 LAKKVASHAPSLLRDVFHTTVNFINQN 181 (195)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 99888777763 6666543
No 48
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=50.67 E-value=2e+02 Score=28.49 Aligned_cols=155 Identities=11% Similarity=0.158 Sum_probs=93.7
Q ss_pred chHHHHHhcCCCC-ChhhhhhHHHHHHHHhhhccCCCccchhhhh-cChhHHHHHHHhcCCc----hhhHhHHHHHHHHH
Q 021148 79 NTLRLLITCLPKL-NLEARKDATQVVANLQRQQVHSKLIASDYLE-ANIDLLDILIAGYENT----DMALHYGAMLRECI 152 (316)
Q Consensus 79 dll~~Li~~L~~L-~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~-~~peil~~Ll~gY~~~----dial~~G~mLREci 152 (316)
+++..|+..+..= +-..|.-+..+...+.+.- +.. .+-+. .-+.++..+..+-.++ ++-..+-..|..|+
T Consensus 134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~-~~~---~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~ 209 (861)
T 2bpt_A 134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESA-DPQ---SQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSL 209 (861)
T ss_dssp HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTS-STT---SSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC-Chh---hhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 4778888888765 6677777777777777632 111 10012 2367888887776554 34444444444443
Q ss_pred HH--HHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhc
Q 021148 153 RH--QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQ 230 (316)
Q Consensus 153 r~--e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQ 230 (316)
.+ +.+....-....+..+++.++.++.++..-|+..+.++...++.....++.. .++.... ..+.+++.-++.+
T Consensus 210 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~---~l~~~~~-~~~~~~~~~vr~~ 285 (861)
T 2bpt_A 210 IFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQ---ALYALTI-ATMKSPNDKVASM 285 (861)
T ss_dssp GGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHH---THHHHHH-HHTTCSSHHHHHH
T ss_pred HHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HHHcCCcHHHHHH
Confidence 21 0000000001112233456677888998899999999998877655555542 4555553 5677888888999
Q ss_pred hhhHHHHHhcc
Q 021148 231 AVKLLGDILLD 241 (316)
Q Consensus 231 SLKLLgelLLd 241 (316)
++.+|+.+.-.
T Consensus 286 a~~~l~~l~~~ 296 (861)
T 2bpt_A 286 TVEFWSTICEE 296 (861)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888743
No 49
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=50.27 E-value=1.5e+02 Score=26.94 Aligned_cols=123 Identities=11% Similarity=0.120 Sum_probs=84.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhcchhhHhhhh-hccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhh
Q 021148 140 MALHYGAMLRECIRHQSVARYVLESQHMKKFFD-YIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSK 218 (316)
Q Consensus 140 ial~~G~mLREcir~e~la~~iL~~~~f~~fF~-yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~ 218 (316)
--..+-..|.+++.....+..+.....+-.++. .++.++=+|-..|..++-.+-+..+..-..++..+ -.... -+
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g---~l~~L-l~ 131 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLG---ALRKL-LR 131 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT---HHHHH-HH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCC---CHHHH-HH
Confidence 344445566666665556666655666667777 88888899999999999998887775555555544 23333 25
Q ss_pred hccC-CCceehhchhhHHHHHhccCCcHHHHHHhhcChhhHHHHHHHhccCC
Q 021148 219 LLES-SNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 219 LL~S-~NYVTkRQSLKLLgelLLdr~N~~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
||.+ ++=-.+|.++--|+.|. |.|-.-...++. ..-+..+..+|++.+
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~--~~~~~~~~~~~~-~ggi~~L~~lL~~~d 180 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLV--REQEAGLLQFLR-LDGFSVLMRAMQQQV 180 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHH--TTCHHHHHHHHH-TTHHHHHHHHHHSSC
T ss_pred HHccCCCHHHHHHHHHHHHHHH--cCCcHHHHHHHH-CCCHHHHHHHHcCCC
Confidence 6765 36567899999999988 556555555554 346888888888765
No 50
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=44.72 E-value=83 Score=34.29 Aligned_cols=78 Identities=14% Similarity=0.162 Sum_probs=58.1
Q ss_pred CCchhhHhHHHHHHHHHHHHHHHHHHhc--chhhHhhhhhc----cCCCchhhhhHHHHHHHHHhh---ChHHHHHHHHh
Q 021148 136 ENTDMALHYGAMLRECIRHQSVARYVLE--SQHMKKFFDYI----QLPNFDIAADAAATFKELLTR---HKSTVAEFLSK 206 (316)
Q Consensus 136 ~~~dial~~G~mLREcir~e~la~~iL~--~~~f~~fF~yv----~~~~FdiasDAf~TfkelLt~---Hk~lvaefl~~ 206 (316)
+.||.-...=..||.++.|=. ..+|. .+.|..+++-+ ..+.-||+.-+..++.++|.+ +...+.+|..+
T Consensus 842 ~~Pe~r~~ff~ll~~~~~~~f--~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~~~~~~~F~~~ 919 (1073)
T 3gjx_A 842 EYPEHRTNFFLLLQAVNSHCF--PAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQT 919 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHCG--GGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHh--HHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHH
Confidence 467877777788888887711 22333 45677777643 789999999999999999975 55677799998
Q ss_pred cHHHHHHHh
Q 021148 207 NYDWFFAEY 215 (316)
Q Consensus 207 Nyd~Ff~~y 215 (316)
.|-.+....
T Consensus 920 ~~~~~~~~i 928 (1073)
T 3gjx_A 920 YFCDILQHI 928 (1073)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888876554
No 51
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=44.00 E-value=1.8e+02 Score=26.12 Aligned_cols=148 Identities=9% Similarity=0.061 Sum_probs=73.5
Q ss_pred ChhHHHHHHHhcCCc--hhhH--hHHHHHHHHHH---HHHHHHHHhcchhhHhhhhhccCC--CchhhhhHHHHHHHHHh
Q 021148 124 NIDLLDILIAGYENT--DMAL--HYGAMLRECIR---HQSVARYVLESQHMKKFFDYIQLP--NFDIAADAAATFKELLT 194 (316)
Q Consensus 124 ~peil~~Ll~gY~~~--dial--~~G~mLREcir---~e~la~~iL~~~~f~~fF~yv~~~--~FdiasDAf~TfkelLt 194 (316)
-|+++..|+....++ +... .+=..|+..++ .+.+..++ .+.+..+...++.+ +=+|-.-|..++..++.
T Consensus 126 w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (462)
T 1ibr_B 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (462)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH--HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 488888888877654 3222 22223333332 11100000 11223344455555 55666666666666542
Q ss_pred hChHHHHHHHHhcHHH-HHHHhhhhhccCCCceehhchhhHHHHHhccCCcHHHHHHhhcChhhHHHHHHHhccCC----
Q 021148 195 RHKSTVAEFLSKNYDW-FFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRY---- 269 (316)
Q Consensus 195 ~Hk~lvaefl~~Nyd~-Ff~~yn~~LL~S~NYVTkRQSLKLLgelLLdr~N~~vM~rYIs~~eNLKl~M~LL~d~s---- 269 (316)
-=+...... .+.. +.... ..++.+++--.|+++++.|+++.-.. ...+..|+.. .-+..++..++|..
T Consensus 204 ~~~~~~~~~---~~~~~l~~~l-~~~~~~~~~~vr~~~~~~l~~l~~~~--~~~~~~~~~~-~l~~~~~~~~~~~~~~v~ 276 (462)
T 1ibr_B 204 FTKANFDKE---SERHFIMQVV-CEATQCPDTRVRVAALQNLVKIMSLY--YQYMETYMGP-ALFAITIEAMKSDIDEVA 276 (462)
T ss_dssp TTHHHHTSH---HHHHHHHHHH-HHHTTCSSHHHHHHHHHHHHHHHHHC--GGGCTTTTTT-THHHHHHHHHHCSSHHHH
T ss_pred HHHHhhhhh---HHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHcCCchHHH
Confidence 111000000 0111 23333 25678888888999999999998543 2333345442 34555666677766
Q ss_pred CCcceeeeeee
Q 021148 270 FPRMHVEDIFY 280 (316)
Q Consensus 270 ~EAFHVFKvFV 280 (316)
..|+..+.-++
T Consensus 277 ~~a~~~l~~~~ 287 (462)
T 1ibr_B 277 LQGIEFWSNVC 287 (462)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44554444443
No 52
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=42.64 E-value=2.6e+02 Score=27.61 Aligned_cols=42 Identities=10% Similarity=0.087 Sum_probs=28.5
Q ss_pred hccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHh
Q 021148 173 YIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEY 215 (316)
Q Consensus 173 yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~y 215 (316)
.+.-++-.|.+.|...+.++...++.. .+.+....+.++...
T Consensus 187 lL~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~~l~~~L 228 (618)
T 1w63_A 187 LLNEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVPQLVRIL 228 (618)
T ss_dssp STTCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHHHHHHHH
T ss_pred HhCCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHH
Confidence 445677889999999999988766554 334445555555544
No 53
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=42.29 E-value=70 Score=28.61 Aligned_cols=64 Identities=13% Similarity=0.249 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHhhcCCC-chhhhhHHHHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHh
Q 021148 12 PVDIVRQTRDLIIYANRSAD-VRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFR 77 (316)
Q Consensus 12 P~elVr~l~e~l~~L~~~~~-~~~~K~~~k~eeisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~ 77 (316)
..|.|....|-|.+||.-.+ -.+.+.-...-+++|.|..--+.++|++. -.+|.|..|+.++++
T Consensus 74 Tre~v~d~l~YLkkLD~l~~~Lq~h~~Lse~l~l~kqLs~sLh~mC~~~p--ld~eLc~~l~~qL~~ 138 (204)
T 2jqq_A 74 TQEIIKDVLEYLKKLDEIYGSLRNHSQLTEALSLGKRLSKSLHEMCGIEP--LEEEICSGLIEQLYK 138 (204)
T ss_dssp THHHHHHHHHHHHHHHHHHHTCSSSSHHHHHHHHHHHHHHHHHHHHTSSC--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCC--CcHHHHHHHHHHHHH
Confidence 37888888888888875211 01122111134588888888888999875 456888888888774
No 54
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=41.45 E-value=2.7e+02 Score=27.47 Aligned_cols=173 Identities=14% Similarity=0.202 Sum_probs=100.7
Q ss_pred hHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhcC--CchhhHhHHHHHHHHHHHHHH
Q 021148 80 TLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYE--NTDMALHYGAMLRECIRHQSV 157 (316)
Q Consensus 80 ll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY~--~~dial~~G~mLREcir~e~l 157 (316)
++..|...+..-+.+.|+.+..++..+.....+. ...|+. ++++..++.+-+ ++++...+-..+..+++...-
T Consensus 225 ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~l~--~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 299 (861)
T 2bpt_A 225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTF---MKPYME--QALYALTIATMKSPNDKVASMTVEFWSTICEEEID 299 (861)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGG---CHHHHH--HTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHh
Confidence 4555555566668888998888888887644211 122332 167777766654 456666666667666665321
Q ss_pred ------------------HHHHhcchhhHhhhhhccC-------CCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHH
Q 021148 158 ------------------ARYVLESQHMKKFFDYIQL-------PNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFF 212 (316)
Q Consensus 158 ------------------a~~iL~~~~f~~fF~yv~~-------~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff 212 (316)
.+..+ .+.+-.++..+.- ..+.+...|..++..+-..-. ..-...+.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~-------~~~~~~l~ 371 (861)
T 2bpt_A 300 IAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG-------NHILEPVL 371 (861)
T ss_dssp HHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-------GGGHHHHH
T ss_pred hhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc-------HhHHHHHH
Confidence 11111 2233344444432 346666666666666554322 12234556
Q ss_pred HHhhhhhccCCCceehhchhhHHHHHhccCCcHHHHHHhhcChhhHHHHHHHhccCC
Q 021148 213 AEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 213 ~~yn~~LL~S~NYVTkRQSLKLLgelLLdr~N~~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
.... .++.+++.-.|..++..||.+.-.- ....+..|+. .=+..+...|+|++
T Consensus 372 ~~l~-~~l~~~~~~~r~~a~~~l~~i~~~~-~~~~~~~~l~--~il~~l~~~l~d~~ 424 (861)
T 2bpt_A 372 EFVE-QNITADNWRNREAAVMAFGSIMDGP-DKVQRTYYVH--QALPSILNLMNDQS 424 (861)
T ss_dssp HHHH-HHTTCSSHHHHHHHHHHHHHTSSSS-CHHHHHHHHH--HHHHHHHHGGGCSC
T ss_pred HHHH-HHcCCCChhHHHHHHHHHHHHHcCC-CHHHHHHHHH--HHHHHHHHHcCCCc
Confidence 6664 7788999999999999999988321 1244455553 33555666677766
No 55
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=41.06 E-value=1.9e+02 Score=28.86 Aligned_cols=80 Identities=11% Similarity=0.109 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHhhhccCCCCCC--cHHHHHHHHHHHH-hh---chHHHHHhcCCC
Q 021148 17 RQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEP--VSEACAQLTAEFF-RE---NTLRLLITCLPK 90 (316)
Q Consensus 17 r~l~e~l~~L~~~~~~~~~K~~~k~eeisK~L~~mK~il~G~~e~ep--~~e~~~qLa~ei~-~~---dll~~Li~~L~~ 90 (316)
|.+++.+..+..+.+ +.+| ..-+.+-+.++|.-+-++...++ -.+.+..|..-+. -. .++...+..++.
T Consensus 11 ~~l~~~I~~ir~~~~----~~~e-~~~i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~s 85 (621)
T 2vgl_A 11 RGLAVFISDIRNCKS----KEAE-IKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSS 85 (621)
T ss_dssp HHHHHHHHHHHHCSS----HHHH-HHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGGGC
T ss_pred hhHHHHHHHHHcCCC----HHHH-HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHhcC
Confidence 556665555544321 1111 13488889999999976322111 1223333333221 11 246778888888
Q ss_pred CChhhhhhHHH
Q 021148 91 LNLEARKDATQ 101 (316)
Q Consensus 91 L~fE~RKdv~~ 101 (316)
=+++.||-+..
T Consensus 86 ~~~~~Krl~YL 96 (621)
T 2vgl_A 86 NRYTEKQIGYL 96 (621)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 88887774444
No 56
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=37.64 E-value=1.1e+02 Score=29.07 Aligned_cols=116 Identities=11% Similarity=0.151 Sum_probs=72.7
Q ss_pred HHHHH-hhchHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhc-C--hhHHHHHHHhcC----CchhhHh
Q 021148 72 TAEFF-RENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEA-N--IDLLDILIAGYE----NTDMALH 143 (316)
Q Consensus 72 a~ei~-~~dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~-~--peil~~Ll~gY~----~~dial~ 143 (316)
++.+. ..+.++.|+..|..=+++.||.++...+++-+.. ...++.. + |.++..|-.+-. .+++...
T Consensus 323 ~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~------~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~ 396 (457)
T 1xm9_A 323 SQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP------LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS 396 (457)
T ss_dssp HHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG------GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH------HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence 34444 4688999999999999999999999999997632 2344432 2 444444432211 1245545
Q ss_pred HHHHHHHHHH-HHHHHHHHhcchhhHhhhhhccCC-CchhhhhHHHHHHHHH
Q 021148 144 YGAMLRECIR-HQSVARYVLESQHMKKFFDYIQLP-NFDIAADAAATFKELL 193 (316)
Q Consensus 144 ~G~mLREcir-~e~la~~iL~~~~f~~fF~yv~~~-~FdiasDAf~TfkelL 193 (316)
+-..|..+++ ....++.+.+.+.+.++.+....+ +=+|.-.|..++..++
T Consensus 397 ~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 397 ACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 5455666554 345677777777777777766666 5566666666654443
No 57
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=36.39 E-value=1.3e+02 Score=28.50 Aligned_cols=116 Identities=17% Similarity=0.153 Sum_probs=79.9
Q ss_pred hhHHHHHHHhcCCchhhHhHHHHHHHHHHH-HHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHH
Q 021148 125 IDLLDILIAGYENTDMALHYGAMLRECIRH-QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEF 203 (316)
Q Consensus 125 peil~~Ll~gY~~~dial~~G~mLREcir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaef 203 (316)
|.++..|-++ ++++-..+-..|+....+ +..-..+.....+-.+.+.+..++=++.-.|-.+++.|...+...-...
T Consensus 5 ~~lv~~L~s~--~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 5 PKAVQYLSSQ--DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp HHHHHHHHSS--CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4445555433 567777777777775544 4444477788888888999998888998899999999887555554444
Q ss_pred HHhcHHHHHHHhhhhhcc-CCCceehhchhhHHHHHhccCCcHH
Q 021148 204 LSKNYDWFFAEYNSKLLE-SSNYITRRQAVKLLGDILLDRSNSV 246 (316)
Q Consensus 204 l~~Nyd~Ff~~yn~~LL~-S~NYVTkRQSLKLLgelLLdr~N~~ 246 (316)
....-- ... -+||. +++.-+++++.-.|+.|-.+..|..
T Consensus 83 ~~~G~i---~~L-v~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~ 122 (457)
T 1xm9_A 83 RRQNGI---REA-VSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122 (457)
T ss_dssp HHTTCH---HHH-HHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH
T ss_pred HHcCCH---HHH-HHHHhhCCCHHHHHHHHHHHHHHhcCHHhHH
Confidence 444322 222 25677 7788888888888888887766655
No 58
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=35.21 E-value=72 Score=26.68 Aligned_cols=89 Identities=9% Similarity=-0.001 Sum_probs=59.1
Q ss_pred CCCcHHHHHHHHHHHHhh------chHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHH--
Q 021148 61 SEPVSEACAQLTAEFFRE------NTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILI-- 132 (316)
Q Consensus 61 ~ep~~e~~~qLa~ei~~~------dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll-- 132 (316)
..|..-...++|+..+++ .++..|..-|..=+-..+-.+-+|...|++ .+....++.+..|..+|..|.
T Consensus 25 ~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~---~Gs~~f~~~~r~~~~~Ik~l~~F 101 (140)
T 1vdy_A 25 KVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVG---KSGSEFRREMQRNSVAVRNLFHY 101 (140)
T ss_dssp SCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTT---TSCHHHHHHHHHTTHHHHTTTTC
T ss_pred CCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHH---hCCHHHHHHHHHhHHHHHHHHhc
Confidence 344445678888888774 356777887777666666666677777765 233456888888888888774
Q ss_pred HhcCCchhhHhHHHHHHHHH
Q 021148 133 AGYENTDMALHYGAMLRECI 152 (316)
Q Consensus 133 ~gY~~~dial~~G~mLREci 152 (316)
+|..+|--.-.-|...|+-.
T Consensus 102 ~g~~dp~~G~d~g~~VR~~A 121 (140)
T 1vdy_A 102 KGHPDPLKGDALNKAVRETA 121 (140)
T ss_dssp CCCCCTTTSSCHHHHHHHHH
T ss_pred CCCCCcccccchhHHHHHHH
Confidence 44444435556677778655
No 59
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=33.56 E-value=88 Score=25.38 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhchH
Q 021148 40 KMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTL 81 (316)
Q Consensus 40 k~eeisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dll 81 (316)
+.+|++|.|..+-.-|-..+=.++..+...+|++++-+.|.-
T Consensus 37 ~~~D~~KRL~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~ 78 (118)
T 2yru_A 37 VCDDISRRLALLREQWAGGKLSIPVKKRMALLVQELLHHQWD 78 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 368999999999888875554555667788999999877764
No 60
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=28.81 E-value=1e+02 Score=32.01 Aligned_cols=51 Identities=29% Similarity=0.307 Sum_probs=40.9
Q ss_pred hhccCCCceehhchhhHHHHHhccCCcHHHHHHhhcChhhHHHHHHHhccCC
Q 021148 218 KLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 218 ~LL~S~NYVTkRQSLKLLgelLLdr~N~~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
.||++++|-+|.-+++||.-|+..|... +-..-++.|..+-.+|.+|.|++
T Consensus 129 ~lL~~~df~vR~~alqlL~~L~~~r~~~-~Q~~Il~~p~gi~~Lv~lL~d~r 179 (651)
T 3grl_A 129 SLLEEFDFHVRWPGVKLLTSLLKQLGPQ-VQQIILVSPMGVSRLMDLLADSR 179 (651)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHSHHH-HHHHHHHSTTHHHHHHGGGGCSS
T ss_pred HHhcCccHHHHHHHHHHHHHHHhcCcHH-HHHHHHhCcccHHHHHHHHhCch
Confidence 5789999999999999999999776531 33334458888889999999886
No 61
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=27.80 E-value=4e+02 Score=25.36 Aligned_cols=139 Identities=13% Similarity=0.094 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhchHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhh
Q 021148 42 AELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYL 121 (316)
Q Consensus 42 eeisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl 121 (316)
+|.-+.|..+|.++..|. .+|+|+++.|=+..|+.....-+-+...-+-.-|..++-+-.| .+=+
T Consensus 133 ~~lr~aLfsLk~~~q~D~----------~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~G-----m~gv 197 (339)
T 3dad_A 133 PELRRSLFSLKQIFQEDK----------DLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDG-----MLGV 197 (339)
T ss_dssp HHHHHHHHHHHHHHHTCT----------THHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHH-----HHHH
T ss_pred HHHHHHHHHHHHHhhcch----------HHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcccc-----ccch
Confidence 467778999999888554 3999999999888888888887777666666666666543111 1123
Q ss_pred hcChhHHHHHHHhcCC--chhhHhHHHHHHHHHHH-HHHHHHHhcchh----------hHhhhhhcc---CCCchhhhhH
Q 021148 122 EANIDLLDILIAGYEN--TDMALHYGAMLRECIRH-QSVARYVLESQH----------MKKFFDYIQ---LPNFDIAADA 185 (316)
Q Consensus 122 ~~~peil~~Ll~gY~~--~dial~~G~mLREcir~-e~la~~iL~~~~----------f~~fF~yv~---~~~FdiasDA 185 (316)
..||+.+..+..--+. +.+.=.+-.+|.-++-+ |..+..+...-. +..+...++ .++=|+..-|
T Consensus 198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 4588888888654432 33333455555554443 223332222111 445555554 5566666666
Q ss_pred HHHHHHHHhh
Q 021148 186 AATFKELLTR 195 (316)
Q Consensus 186 f~TfkelLt~ 195 (316)
++-+..+|..
T Consensus 278 mtLIN~lL~~ 287 (339)
T 3dad_A 278 VTLINKTLAA 287 (339)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 6666666553
No 62
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=25.10 E-value=3.1e+02 Score=23.81 Aligned_cols=165 Identities=10% Similarity=0.125 Sum_probs=80.2
Q ss_pred CCCChhhhhhHHHHHHH-HhhhccCCCccchhhhhcChhHHHHHHHhc-CCchhhH--hHHHHHHHHHHHHHHHHHHhcc
Q 021148 89 PKLNLEARKDATQVVAN-LQRQQVHSKLIASDYLEANIDLLDILIAGY-ENTDMAL--HYGAMLRECIRHQSVARYVLES 164 (316)
Q Consensus 89 ~~L~fE~RKdv~~If~~-llr~~~~~r~p~v~Yl~~~peil~~Ll~gY-~~~dial--~~G~mLREcir~e~la~~iL~~ 164 (316)
..=+|..||.+..-... ++... .+... --....++++.|..+- .++++.. .+...|.. +|+-+ ..
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~--~~i~~--~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~------la~~l-~~ 94 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQT--KKLKS--TSQNYSNLLGIYGHIIQKDANIQAVALAAQSVEL------ICDKL-KT 94 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGC--CCBCC--TTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHH------HHHHH-CT
T ss_pred hcCCHHHHHHHHHHHHHHHHhcC--Ccccc--CcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHH------HHHhc-cc
Confidence 45578889988877776 76421 11110 0012368888888887 4555433 22222222 22211 10
Q ss_pred hhh---------HhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhchhhHH
Q 021148 165 QHM---------KKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLL 235 (316)
Q Consensus 165 ~~f---------~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQSLKLL 235 (316)
+.| -.+++.+.-..=.|..-|...+..+...-.. .+.+ ...+...+... ..|.+.|.=+|.+++..|
T Consensus 95 ~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~--~~l~~ll~~l~-~~l~~k~~~vk~~al~~l 170 (249)
T 2qk1_A 95 PGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASS--GRNEDMLKDIL-EHMKHKTPQIRMECTQLF 170 (249)
T ss_dssp TTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTT--CTTHHHHHHHH-HHTTCSSHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccC--CcHHHHHHHHH-HHHcCCChHHHHHHHHHH
Confidence 112 2233333333333332233332222221100 0000 11445565654 678899999999999999
Q ss_pred HHHhccCCcH-HHHHHhhcChhhHHHHHHHhccCC
Q 021148 236 GDILLDRSNS-VVMTRYVSSRENLRILMNLLRVRY 269 (316)
Q Consensus 236 gelLLdr~N~-~vM~rYIs~~eNLKl~M~LL~d~s 269 (316)
+.++-.-.-. ..+..|+ +++-+..++.+|.|..
T Consensus 171 ~~~~~~~~~~~~~l~~~l-~~~iip~l~~~l~D~~ 204 (249)
T 2qk1_A 171 NASMKEEKDGYSTLQRYL-KDEVVPIVIQIVNDTQ 204 (249)
T ss_dssp HHHHHHCCSCSHHHHHHH-TTTHHHHHHHHHTCSS
T ss_pred HHHHHHcCCcchhHHHHH-HHHHHHHHHHHhcCCC
Confidence 9999542211 4444555 1233445555555544
No 63
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=22.81 E-value=4.3e+02 Score=25.69 Aligned_cols=137 Identities=18% Similarity=0.231 Sum_probs=75.8
Q ss_pred hHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHH----HHHHhcCCchhhHhHHHHHHHHH--H
Q 021148 80 TLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLD----ILIAGYENTDMALHYGAMLRECI--R 153 (316)
Q Consensus 80 ll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~----~Ll~gY~~~dial~~G~mLREci--r 153 (316)
++..++..++.=+++.||-+..-...+.+ .+||.+. .+.+.-.+++-..- |.-||-.. +
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~--------------~~~e~~~l~~n~l~kdL~~~n~~ir-~~AL~~L~~i~ 114 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAK--------------SQPDMAIMAVNSFVKDCEDPNPLIR-ALAVRTMGCIR 114 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHH--------------HSHHHHHTTHHHHGGGSSSSSHHHH-HHHHHHHHTCC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcc--------------cCchHHHHHHHHHHHHcCCCCHHHH-HHHHHHHHcCC
Confidence 45566667777778877766554444433 2344432 23333344332222 22233211 1
Q ss_pred HHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhchhh
Q 021148 154 HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVK 233 (316)
Q Consensus 154 ~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQSLK 233 (316)
.+.+++.+.. .+.+.+..++-.|-.-|...+-.+....+.++-+ ..++.... .+|.++|...++.++.
T Consensus 115 ~~~~~~~l~~-----~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~------~~~~~~l~-~lL~d~d~~V~~~A~~ 182 (591)
T 2vgl_B 115 VDKITEYLCE-----PLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED------QGFLDSLR-DLIADSNPMVVANAVA 182 (591)
T ss_dssp SGGGHHHHHH-----HHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH------HHHHHHHH-HTTSCSCHHHHHHHHH
T ss_pred hHHHHHHHHH-----HHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc------ccHHHHHH-HHhCCCChhHHHHHHH
Confidence 2223333221 1233444555566556666665555555554432 35777775 8999999999999999
Q ss_pred HHHHHhccCC
Q 021148 234 LLGDILLDRS 243 (316)
Q Consensus 234 LLgelLLdr~ 243 (316)
.|+++--+..
T Consensus 183 aL~~i~~~~~ 192 (591)
T 2vgl_B 183 ALSEISESHP 192 (591)
T ss_dssp HHHHHTTSCC
T ss_pred HHHHHHhhCC
Confidence 9999876654
No 64
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=21.01 E-value=91 Score=25.22 Aligned_cols=97 Identities=14% Similarity=0.199 Sum_probs=51.1
Q ss_pred CCCChHHHHHHHH--------HHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhc
Q 021148 8 KPRTPVDIVRQTR--------DLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFREN 79 (316)
Q Consensus 8 ~~ktP~elVr~l~--------e~l~~L~~~~~~~~~K~~~k~eeisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~d 79 (316)
++-|-+|+.+.+. ..+..++.+.. ... ..+.+..+++++.-=-..+.|+...++..+ -.++..+ .++.
T Consensus 25 ~~~T~~elA~~~~~~G~~is~s~is~~E~G~r-~~P-s~~~l~~iA~~f~V~~~yl~~~~~~~~~~~-el~ll~~-~rd~ 100 (135)
T 3r1f_A 25 GPHTSAEVIAALKAEGITMSAPYLSQLRSGNR-TNP-SGATMAALANFFRIKAAYFTDDEYYEKLDK-ELQWLCT-MRDD 100 (135)
T ss_dssp CCCCHHHHHHHHHTTTCCCCHHHHHHHHHTSS-CCC-CHHHHHHHHHHHTSCTHHHHCHHHHHHHHH-HHHHHHH-TTST
T ss_pred CCCCHHHHHHHHcccCCCcCHHHHHHHHCCCC-CCC-CHHHHHHHHHHhCCCHHHHcCCcchhhHHH-HHHHHHH-Hhhh
Confidence 4557778877764 55777765321 011 113356677777765566665432111111 1122222 2223
Q ss_pred hHHHHHhcCCCCChhhhhhHHHHHHHHhh
Q 021148 80 TLRLLITCLPKLNLEARKDATQVVANLQR 108 (316)
Q Consensus 80 ll~~Li~~L~~L~fE~RKdv~~If~~llr 108 (316)
-+..+......|+=|+++.+..+...+.+
T Consensus 101 ~v~~l~~r~~~Ls~e~~~~l~~ii~~l~~ 129 (135)
T 3r1f_A 101 GVRRIAQRAHGLPSAAQQKVLDRIDELRR 129 (135)
T ss_dssp THHHHHHHHTSCCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 33444445557888888888888777654
Done!