Query 021149
Match_columns 316
No_of_seqs 128 out of 148
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 07:58:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021149.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021149hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05212 DUF707: Protein of un 100.0 5E-118 1E-122 839.4 23.3 260 10-299 34-293 (294)
2 cd04185 GT_2_like_b Subfamily 94.4 0.14 3.1E-06 43.5 6.9 101 92-237 78-178 (202)
3 cd04186 GT_2_like_c Subfamily 93.9 0.15 3.3E-06 40.8 5.6 92 93-233 74-166 (166)
4 TIGR01556 rhamnosyltran L-rham 93.1 0.35 7.6E-06 44.0 7.3 128 92-233 72-202 (281)
5 cd02510 pp-GalNAc-T pp-GalNAc- 90.9 4.1 8.9E-05 37.6 11.7 139 92-234 82-227 (299)
6 cd02525 Succinoglycan_BP_ExoA 88.4 1.3 2.9E-05 38.2 6.1 128 92-234 80-210 (249)
7 cd02526 GT2_RfbF_like RfbF is 88.4 1.1 2.3E-05 38.9 5.5 127 93-233 75-205 (237)
8 cd02520 Glucosylceramide_synth 88.4 0.62 1.4E-05 40.0 4.0 93 92-233 85-177 (196)
9 PF13641 Glyco_tranf_2_3: Glyc 86.5 0.98 2.1E-05 39.0 4.2 198 19-236 3-214 (228)
10 cd06421 CESA_CelA_like CESA_Ce 86.5 0.49 1.1E-05 40.7 2.3 129 92-237 83-216 (234)
11 cd04195 GT2_AmsE_like GT2_AmsE 82.5 0.98 2.1E-05 38.1 2.3 119 91-230 78-199 (201)
12 cd06442 DPM1_like DPM1_like re 77.4 2.9 6.3E-05 35.8 3.6 36 92-127 77-112 (224)
13 cd06433 GT_2_WfgS_like WfgS an 76.1 5.1 0.00011 33.0 4.6 37 92-128 74-111 (202)
14 COG1216 Predicted glycosyltran 76.0 14 0.0003 34.7 8.1 138 94-238 85-226 (305)
15 PLN02726 dolichyl-phosphate be 74.9 7.3 0.00016 34.8 5.6 109 16-129 8-129 (243)
16 cd06437 CESA_CaSu_A2 Cellulose 73.0 3.5 7.6E-05 36.1 3.1 132 92-237 86-218 (232)
17 PF13632 Glyco_trans_2_3: Glyc 68.1 6 0.00013 33.6 3.4 124 96-235 1-127 (193)
18 cd06434 GT2_HAS Hyaluronan syn 67.7 2.9 6.3E-05 36.1 1.4 41 92-132 76-116 (235)
19 cd06439 CESA_like_1 CESA_like_ 66.8 4.1 9E-05 35.8 2.2 39 93-131 109-147 (251)
20 PF00535 Glycos_transf_2: Glyc 66.6 4.5 9.8E-05 31.8 2.2 38 92-129 77-114 (169)
21 cd04188 DPG_synthase DPG_synth 63.2 4.7 0.0001 34.7 1.8 37 92-128 81-117 (211)
22 PF13506 Glyco_transf_21: Glyc 62.9 5 0.00011 35.3 2.0 125 92-235 30-156 (175)
23 cd06435 CESA_NdvC_like NdvC_li 60.1 5.2 0.00011 34.8 1.5 37 93-129 84-120 (236)
24 PF02434 Fringe: Fringe-like; 58.1 4.2 9.1E-05 38.1 0.7 126 91-241 84-216 (252)
25 cd06913 beta3GnTL1_like Beta 1 54.1 24 0.00053 30.5 4.8 33 91-123 82-114 (219)
26 PTZ00260 dolichyl-phosphate be 52.4 23 0.0005 34.3 4.7 190 17-226 70-286 (333)
27 PF01762 Galactosyl_T: Galacto 46.8 45 0.00098 29.3 5.3 165 16-215 18-186 (195)
28 PF12621 DUF3779: Phosphate me 46.8 15 0.00033 29.9 2.2 52 83-139 34-87 (95)
29 PF10111 Glyco_tranf_2_2: Glyc 45.4 41 0.00089 31.3 5.1 95 21-116 2-111 (281)
30 cd00761 Glyco_tranf_GTA_type G 44.5 19 0.00041 27.3 2.3 22 93-114 77-98 (156)
31 cd06423 CESA_like CESA_like is 44.2 13 0.00029 28.9 1.4 38 93-130 78-116 (180)
32 cd00505 Glyco_transf_8 Members 43.2 37 0.00081 30.9 4.4 89 17-117 30-118 (246)
33 cd04187 DPM1_like_bac Bacteria 42.8 27 0.00059 29.1 3.2 35 92-127 79-113 (181)
34 cd04184 GT2_RfbC_Mx_like Myxoc 41.6 21 0.00045 30.0 2.3 37 92-128 82-119 (202)
35 cd04192 GT_2_like_e Subfamily 40.4 22 0.00047 30.2 2.3 38 92-129 81-118 (229)
36 KOG0747 Putative NAD+-dependen 38.4 46 0.00099 33.4 4.4 75 17-91 7-82 (331)
37 cd02522 GT_2_like_a GT_2_like_ 36.9 25 0.00054 29.9 2.1 94 33-132 18-111 (221)
38 cd04196 GT_2_like_d Subfamily 36.0 28 0.00061 29.2 2.2 47 182-233 158-204 (214)
39 cd06427 CESA_like_2 CESA_like_ 35.4 34 0.00075 30.3 2.8 38 92-129 83-122 (241)
40 cd06430 GT8_like_2 GT8_like_2 34.1 1.4E+02 0.0031 29.4 7.0 102 19-122 2-124 (304)
41 PF09828 Chrome_Resist: Chroma 33.8 33 0.00071 30.4 2.3 55 79-140 15-87 (135)
42 TIGR03469 HonB hopene-associat 33.3 40 0.00086 32.9 3.1 33 94-126 134-166 (384)
43 PF12996 DUF3880: DUF based on 32.3 22 0.00047 27.6 0.9 25 88-122 13-37 (79)
44 cd06420 GT2_Chondriotin_Pol_N 30.6 34 0.00074 28.2 1.8 27 92-118 78-104 (182)
45 PF09258 Glyco_transf_64: Glyc 29.8 92 0.002 29.3 4.8 95 26-121 8-103 (247)
46 KOG2264 Exostosin EXT1L [Signa 27.2 83 0.0018 34.4 4.3 97 25-122 631-753 (907)
47 PRK11498 bcsA cellulose syntha 26.7 1.5E+02 0.0033 33.2 6.4 109 16-129 259-376 (852)
48 TIGR02165 cas_GSU0054 CRISPR-a 25.5 11 0.00024 38.2 -2.2 19 193-211 89-107 (465)
49 cd04190 Chitin_synth_C C-termi 25.3 93 0.002 28.0 3.9 30 91-120 71-100 (244)
50 KOG1555 26S proteasome regulat 25.1 37 0.00081 33.9 1.3 41 163-203 80-120 (316)
51 PLN02867 Probable galacturonos 24.5 32 0.0007 36.5 0.8 34 83-117 334-367 (535)
52 cd02515 Glyco_transf_6 Glycosy 24.4 3.1E+02 0.0068 27.0 7.4 93 18-114 36-145 (271)
53 cd06438 EpsO_like EpsO protein 23.6 78 0.0017 26.7 2.8 29 92-120 80-108 (183)
54 cd04191 Glucan_BSP_ModH Glucan 22.5 57 0.0012 30.5 2.0 36 92-127 94-130 (254)
55 KOG2547 Ceramide glucosyltrans 22.4 1.4E+02 0.0031 31.0 4.8 114 91-224 168-289 (431)
56 PF03314 DUF273: Protein of un 21.7 54 0.0012 31.3 1.6 39 77-115 24-65 (222)
57 PF14538 Raptor_N: Raptor N-te 21.6 51 0.0011 29.2 1.4 11 45-55 90-100 (154)
58 cd04179 DPM_DPG-synthase_like 21.4 63 0.0014 26.6 1.8 35 95-129 81-115 (185)
59 TIGR03472 HpnI hopanoid biosyn 21.3 65 0.0014 31.3 2.1 127 91-232 124-252 (373)
60 PRK10073 putative glycosyl tra 21.1 85 0.0018 30.2 2.9 106 16-127 5-119 (328)
61 PRK11204 N-glycosyltransferase 20.4 82 0.0018 30.6 2.6 201 16-238 53-266 (420)
No 1
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=100.00 E-value=4.7e-118 Score=839.37 Aligned_cols=260 Identities=65% Similarity=1.184 Sum_probs=248.6
Q ss_pred ccCCCCCCCcEEEEEecccchhhHHHHhhcCCCCCcEEEEEEecCccCccccccccCceeEEEeeccchhhhhhhccCcc
Q 021149 10 CQNNQRPPMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPD 89 (316)
Q Consensus 10 ~~~~~~~~k~Lva~~vG~kqk~~vd~~v~kf~~~nF~v~LfhYDg~v~~w~d~ews~~aiHv~a~kqtKWw~akRfLhPd 89 (316)
.++...++|||||||||+|||++||++|+|| ++|||||||||||+||+|++||||++||||++.|||||||||||||||
T Consensus 34 ~~~~~~~~k~Lla~~VG~kqk~~vd~~v~Kf-~~nF~i~LfhYDg~vd~w~~~~ws~~aiHv~~~kqtKww~akrfLHPd 112 (294)
T PF05212_consen 34 SEDLPKKPKYLLAMTVGIKQKDNVDAIVKKF-SDNFDIMLFHYDGRVDEWDDFEWSDRAIHVSARKQTKWWFAKRFLHPD 112 (294)
T ss_pred cccccCCCceEEEEEecHHHHhhhhHHHhhh-ccCceEEEEEecCCcCchhhcccccceEEEEeccceEEeehhhhcChh
Confidence 4556677899999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred ccccccEEEEeccccccCCCChHHHHHHHHHhCCcccccccCCCCCceeccccccccCcccceeeeeccCCCCCCCCCCC
Q 021149 90 IVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTA 169 (316)
Q Consensus 90 iv~~YdYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~ish~iT~r~~~~~vHr~~~~~~~~~~C~~~~~~ 169 (316)
||++|||||||||||+||+|+|+|||+||++||||||||||+++|+++||+||+|++.++|||. .++++.|.+++++
T Consensus 113 iv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~~~~~~iT~R~~~~~vhr~---~~~~~~~~~~~~~ 189 (294)
T PF05212_consen 113 IVAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSSEIHHPITKRRPDSEVHRK---TRGGPRCCDDSTG 189 (294)
T ss_pred hhccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCceeeeeEEeecCCceeEec---cCCCCCcCCCCCC
Confidence 9999999999999999999999999999999999999999999998999999999999999993 5778888899999
Q ss_pred CCccceEEEeccccchHHHHHHhhhccCCCcccchhhhhhhhhhcCCCCCcEEEEeeceEEeccCCCCCCCCCccccccc
Q 021149 170 PPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTLGVTTEPELNTVG 249 (316)
Q Consensus 170 ppcTgFVEiMaPVFSR~Awrcvw~miqndlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~~ptlg~~~~~~~~~~~ 249 (316)
||||||||||||||||+|||||||||||||+|||||||+|+||+ +++++||||||||||+|+++|||||++.++.
T Consensus 190 ppct~fVEiMAPVFSr~Awrcvw~miqNDLvhGWGLDf~~~~c~-~~~~~kiGVVDs~~VvH~gvptLG~~~~~~~---- 264 (294)
T PF05212_consen 190 PPCTGFVEIMAPVFSRAAWRCVWHMIQNDLVHGWGLDFKWGYCA-GDRHKKIGVVDSQYVVHTGVPTLGGQGNSEK---- 264 (294)
T ss_pred CCcceEEEEecceechHHHHHHHhcccCCCccccchhhhHHHHh-ccccccEEEEeeEEEEEcCCCcCCCcccccc----
Confidence 99999999999999999999999999999999999999999999 6899999999999999999999999886632
Q ss_pred CCCchhhhhccccccCCCCCCCCCChhHHHhhhHHHHHHHHHHHHHhHhc
Q 021149 250 QASDDLEQIANPVALAPSQSRRYDNRPEVRRQSYIEMQIFRNRWKHAVED 299 (316)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vr~r~~~E~~~f~~Rw~~A~~~ 299 (316)
+.++|.+||+||++||++|++||++|++|
T Consensus 265 ---------------------~~~~~~~Vr~r~~~E~~~F~~R~~~a~~~ 293 (294)
T PF05212_consen 265 ---------------------GKDPREEVRRRSFAEMRIFQKRWANAVKE 293 (294)
T ss_pred ---------------------CCchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999986
No 2
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.45 E-value=0.14 Score=43.49 Aligned_cols=101 Identities=17% Similarity=0.239 Sum_probs=67.5
Q ss_pred ccccEEEEeccccccCCCChHHHHHHHHHhCCcccccccCCCCCceeccccccccCcccceeeeeccCCCCCCCCCCCCC
Q 021149 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPP 171 (316)
Q Consensus 92 ~~YdYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~ish~iT~r~~~~~vHr~~~~~~~~~~C~~~~~~pp 171 (316)
+.+|||++.|+|..++..-+.++.+.+++.++.+..|..-...+ +
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-----------------------------------~ 122 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPDG-----------------------------------S 122 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcCCC-----------------------------------c
Confidence 57999999999999998888888888775555554443222110 1
Q ss_pred ccceEEEeccccchHHHHHHhhhccCCCcccchhhhhhhhhhcCCCCCcEEEEeeceEEeccCCCC
Q 021149 172 CIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTL 237 (316)
Q Consensus 172 cTgFVEiMaPVFSR~Awrcvw~miqndlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~~ptl 237 (316)
+.++ +++|++|..+ . .+.+.-..||=|.-+.+-+. ..+.+| .+.+..+.|....+.
T Consensus 123 ~~~~------~~~~~~~~~~-g-~~~~~~~~~~eD~~~~~r~~-~~G~~i-~~~~~~~~h~~~~~~ 178 (202)
T cd04185 123 FVGV------LISRRVVEKI-G-LPDKEFFIWGDDTEYTLRAS-KAGPGI-YVPDAVVVHKTAINK 178 (202)
T ss_pred eEEE------EEeHHHHHHh-C-CCChhhhccchHHHHHHHHH-HcCCcE-EecceEEEEcccccc
Confidence 1121 4889999876 2 23444567887777754443 235688 999999999985443
No 3
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.86 E-value=0.15 Score=40.81 Aligned_cols=92 Identities=20% Similarity=0.150 Sum_probs=61.2
Q ss_pred cccEEEEeccccccCCCChHHHHHHHHHh-CCcccccccCCCCCceeccccccccCcccceeeeeccCCCCCCCCCCCCC
Q 021149 93 EYNYIFLWDEDIGVENFNPRRYLSIVKDE-GLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPP 171 (316)
Q Consensus 93 ~YdYIflwDDDL~vd~f~i~ry~~Ivr~~-gLeISQPALd~~s~~ish~iT~r~~~~~vHr~~~~~~~~~~C~~~~~~pp 171 (316)
.+|||++.|+|..++...+.++.+.+.+. +..+..+.
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------------------ 111 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK------------------------------------------ 111 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc------------------------------------------
Confidence 79999999999999888788877754432 22222222
Q ss_pred ccceEEEeccccchHHHHHHhhhccCCCcccchhhhhhhhhhcCCCCCcEEEEeeceEEecc
Q 021149 172 CIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLG 233 (316)
Q Consensus 172 cTgFVEiMaPVFSR~Awrcvw~miqndlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~ 233 (316)
+=.-+.+|++++++.+= .+++.-..+|-|..+...+. ..+.+|..+....+.|.+
T Consensus 112 ----~~~~~~~~~~~~~~~~~--~~~~~~~~~~eD~~~~~~~~-~~g~~i~~~~~~~~~h~~ 166 (166)
T cd04186 112 ----VSGAFLLVRREVFEEVG--GFDEDFFLYYEDVDLCLRAR-LAGYRVLYVPQAVIYHHG 166 (166)
T ss_pred ----CceeeEeeeHHHHHHcC--CCChhhhccccHHHHHHHHH-HcCCeEEEccceEEEecC
Confidence 00124588999998762 23343334777777765543 235789999999999964
No 4
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=93.08 E-value=0.35 Score=44.03 Aligned_cols=128 Identities=15% Similarity=0.065 Sum_probs=72.2
Q ss_pred ccccEEEEeccccccCCCChHHHHHHHHHh--CCccccccc-CCCCCceeccccccccCcccceeeeeccCCCCCCCCCC
Q 021149 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKDE--GLEISQPAL-DPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYST 168 (316)
Q Consensus 92 ~~YdYIflwDDDL~vd~f~i~ry~~Ivr~~--gLeISQPAL-d~~s~~ish~iT~r~~~~~vHr~~~~~~~~~~C~~~~~ 168 (316)
+.+|||++.|+|..++...+.++++.+++. +.-+..|.. +.+.. ...+...... . .-+.. ... ...
T Consensus 72 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~-------~~~-~~~ 140 (281)
T TIGR01556 72 RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTS-RRLPAIHLDG-L-LLRQI-------SLD-GLT 140 (281)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCc-ccCCceeecc-c-ceeee-------ccc-ccC
Confidence 379999999999999999999999988876 567777764 33221 1112111111 0 00000 000 000
Q ss_pred CCCccceEEEeccccchHHHHHHhhhccCCCcccchhhhhhhhhhcCCCCCcEEEEeeceEEecc
Q 021149 169 APPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLG 233 (316)
Q Consensus 169 ~ppcTgFVEiMaPVFSR~Awrcvw~miqndlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~ 233 (316)
.+.-+.++=.-..+++|++++.+= + +++.--.++.|.-|..-+. ..+.+|.++....+.|..
T Consensus 141 ~~~~~~~~~~sg~li~~~~~~~iG-~-fde~~fi~~~D~e~~~R~~-~~G~~i~~~~~~~~~H~~ 202 (281)
T TIGR01556 141 TPQKTSFLISSGCLITREVYQRLG-M-MDEELFIDHVDTEWSLRAQ-NYGIPLYIDPDIVLEHRI 202 (281)
T ss_pred CceeccEEEcCcceeeHHHHHHhC-C-ccHhhcccchHHHHHHHHH-HCCCEEEEeCCEEEEEec
Confidence 111111110012368999999873 2 3333334567777743332 235689999999999974
No 5
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=90.90 E-value=4.1 Score=37.61 Aligned_cols=139 Identities=14% Similarity=0.087 Sum_probs=75.8
Q ss_pred ccccEEEEeccccccCCCChHHHHHHHHHhCCcccccccCCCCC-ceecccccc-cc---CcccceeeeeccCCCCCCCC
Q 021149 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKS-EVHHPITAR-RR---NSKAHRRMYKYKGSGRCDDY 166 (316)
Q Consensus 92 ~~YdYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~-~ish~iT~r-~~---~~~vHr~~~~~~~~~~C~~~ 166 (316)
+..|||++.|.|..++..-++++++.+.+..-.+.-|.+..-.+ .+.+.-... .. ...++...........+...
T Consensus 82 A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (299)
T cd02510 82 ATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERRRES 161 (299)
T ss_pred ccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHHhhhcC
Confidence 67899999999999999999999999998887777787653211 122221111 00 00011000000000000111
Q ss_pred CCCCCccceEEEeccccchHHHHHHhhhccCCCcccch-hhhhhh-hhhcCCCCCcEEEEeeceEEeccC
Q 021149 167 STAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWG-LDIQLG-YCAQGDRTKNVGVVDSEYIVHLGL 234 (316)
Q Consensus 167 ~~~ppcTgFVEiMaPVFSR~Awrcvw~miqndlvhGWG-LD~~w~-~c~~g~~~~kiGVVDa~~V~H~~~ 234 (316)
+..+..+..+-..+=+|+|++|..+=. +......|| =|.-+. ++.+ .+.+|-++-...|.|...
T Consensus 162 ~~~~~~~~~~~g~~~~irr~~~~~vGg--fDe~~~~~~~ED~Dl~~R~~~--~G~~i~~~p~a~v~H~~~ 227 (299)
T cd02510 162 PTAPIRSPTMAGGLFAIDREWFLELGG--YDEGMDIWGGENLELSFKVWQ--CGGSIEIVPCSRVGHIFR 227 (299)
T ss_pred CCCCccCccccceeeEEEHHHHHHhCC--CCCcccccCchhHHHHHHHHH--cCCeEEEeeccEEEEecc
Confidence 112222333333344688999988732 344445565 344442 2221 235799999999999864
No 6
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=88.41 E-value=1.3 Score=38.15 Aligned_cols=128 Identities=9% Similarity=-0.026 Sum_probs=68.0
Q ss_pred ccccEEEEeccccccCCCChHHHHHHHHHhCCcccccccCCCCCceeccccccccCcccceeeeeccCCCCCCCC-C-CC
Q 021149 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDY-S-TA 169 (316)
Q Consensus 92 ~~YdYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~ish~iT~r~~~~~vHr~~~~~~~~~~C~~~-~-~~ 169 (316)
+.+|||.+.|+|..++...++++++..++.+..+.++...............+...+.+. ......+... . ..
T Consensus 80 a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 154 (249)
T cd02525 80 SRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLG-----SGGSAYRGGAVKIGY 154 (249)
T ss_pred hCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhc-----cCCcccccccccccc
Confidence 479999999999999999999999888888877766544321110111000000000000 0000000000 0 00
Q ss_pred CCccceEEEeccccchHHHHHHhhhccCCCcccchhhhhhh-hhhcCCCCCcEEEEeeceEEeccC
Q 021149 170 PPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLG-YCAQGDRTKNVGVVDSEYIVHLGL 234 (316)
Q Consensus 170 ppcTgFVEiMaPVFSR~Awrcvw~miqndlvhGWGLD~~w~-~c~~g~~~~kiGVVDa~~V~H~~~ 234 (316)
..+.++ | +|+|++|+.+= . ++. ....|-|+.+. ++.+ .+.++..+....+.|...
T Consensus 155 ~~~~~~---~--~~~~~~~~~~g-~-~~~-~~~~~eD~~l~~r~~~--~G~~~~~~~~~~~~~~~~ 210 (249)
T cd02525 155 VDTVHH---G--AYRREVFEKVG-G-FDE-SLVRNEDAELNYRLRK--AGYKIWLSPDIRVYYYPR 210 (249)
T ss_pred cccccc---c--eEEHHHHHHhC-C-CCc-ccCccchhHHHHHHHH--cCcEEEEcCCeEEEEcCC
Confidence 001111 1 57899998763 2 222 22346677665 4443 356899999888888763
No 7
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=88.36 E-value=1.1 Score=38.88 Aligned_cols=127 Identities=14% Similarity=0.132 Sum_probs=61.8
Q ss_pred cccEEEEeccccccCCCChHHHH---HHHH-HhCCcccccccCCCCCceeccccccccCcccceeeeeccCCCCCCCCCC
Q 021149 93 EYNYIFLWDEDIGVENFNPRRYL---SIVK-DEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYST 168 (316)
Q Consensus 93 ~YdYIflwDDDL~vd~f~i~ry~---~Ivr-~~gLeISQPALd~~s~~ish~iT~r~~~~~vHr~~~~~~~~~~C~~~~~ 168 (316)
.||||++.|+|..++...+.+++ .... ...+-+..|.............. +.....+ . . .. +.. .
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~-~--~~----~~~--~ 143 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGV-RKSGYKL-R-I--QK----EGE--E 143 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccce-eccCccc-e-e--cc----ccc--C
Confidence 68999999999999988888885 2222 22444555544322211111110 0000000 0 0 00 000 0
Q ss_pred CCCccceEEEeccccchHHHHHHhhhccCCCcccchhhhhhhhhhcCCCCCcEEEEeeceEEecc
Q 021149 169 APPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLG 233 (316)
Q Consensus 169 ~ppcTgFVEiMaPVFSR~Awrcvw~miqndlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~ 233 (316)
..+-..++=.-+-+|+|++++.+=.+ .+.....|-|+.+...+. ..+.++..+....|.|..
T Consensus 144 ~~~~~~~~~~~~~~~rr~~~~~~ggf--d~~~~~~~eD~d~~~r~~-~~G~~~~~~~~~~v~h~~ 205 (237)
T cd02526 144 GLKEVDFLITSGSLISLEALEKVGGF--DEDLFIDYVDTEWCLRAR-SKGYKIYVVPDAVLKHEL 205 (237)
T ss_pred CceEeeeeeccceEEcHHHHHHhCCC--CHHHcCccchHHHHHHHH-HcCCcEEEEcCeEEEecc
Confidence 00000011011125789999887322 222223355666654442 235689888888888864
No 8
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=88.36 E-value=0.62 Score=40.03 Aligned_cols=93 Identities=17% Similarity=0.144 Sum_probs=54.9
Q ss_pred ccccEEEEeccccccCCCChHHHHHHHHHhCCcccccccCCCCCceeccccccccCcccceeeeeccCCCCCCCCCCCCC
Q 021149 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPP 171 (316)
Q Consensus 92 ~~YdYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~ish~iT~r~~~~~vHr~~~~~~~~~~C~~~~~~pp 171 (316)
+.+|||++.|.|..++...+.++++.+. +|..+--.+. |
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l~~~~~-------~~~~~~v~~~--------------------------~-------- 123 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRMVAPLM-------DPGVGLVTCL--------------------------C-------- 123 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHHHHHhh-------CCCCCeEEee--------------------------c--------
Confidence 5799999999999887777777665542 2322211110 0
Q ss_pred ccceEEEeccccchHHHHHHhhhccCCCcccchhhhhhhhhhcCCCCCcEEEEeeceEEecc
Q 021149 172 CIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLG 233 (316)
Q Consensus 172 cTgFVEiMaPVFSR~Awrcvw~miqndlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~ 233 (316)
++ ..+=+|+|++++.+=.+ .....-.+=|+.+...+. ..+.+|.+++.. ++|..
T Consensus 124 ~~----g~~~~~r~~~~~~~ggf--~~~~~~~~eD~~l~~rl~-~~G~~i~~~~~~-~~~~~ 177 (196)
T cd02520 124 AF----GKSMALRREVLDAIGGF--EAFADYLAEDYFLGKLIW-RLGYRVVLSPYV-VMQPL 177 (196)
T ss_pred cc----CceeeeEHHHHHhccCh--HHHhHHHHHHHHHHHHHH-HcCCeEEEcchh-eeccC
Confidence 01 12347889999876322 221223466888876654 246789888775 45543
No 9
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=86.55 E-value=0.98 Score=39.01 Aligned_cols=198 Identities=16% Similarity=0.104 Sum_probs=89.0
Q ss_pred cEEEEEecccchhhHHHHhhcCCC---CCcEEEEEEecCccCcccc-c-----cccCceeEEEee---cc--chhhhhhh
Q 021149 19 NLLAIAAGIKQKKIVDQIVRKFPS---KDFVVMLFHYDGVVDEWKD-L-----VWADRAIHVSAA---NQ--TKWWFAKR 84 (316)
Q Consensus 19 ~Lva~~vG~kqk~~vd~~v~kf~~---~nF~v~LfhYDg~v~~w~d-~-----ews~~aiHv~a~---kq--tKWw~akR 84 (316)
-.|++|+-... ..+...++.... .++.|+++- |+..++=.+ + ++....+++... .+ +|-.-++.
T Consensus 3 v~Vvip~~~~~-~~l~~~l~sl~~~~~~~~~v~vvd-~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~ 80 (228)
T PF13641_consen 3 VSVVIPAYNED-DVLRRCLESLLAQDYPRLEVVVVD-DGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNE 80 (228)
T ss_dssp EEEE--BSS-H-HHHHHHHHHHTTSHHHTEEEEEEE-E-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHH
T ss_pred EEEEEEecCCH-HHHHHHHHHHHcCCCCCeEEEEEE-CCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHH
Confidence 45566654332 355555554432 468888876 343333211 1 233323444332 22 23332333
Q ss_pred ccCccccccccEEEEeccccccCCCChHHHHHHHHHhCCcccccccCCCCCceeccccccccCcccceeeeeccCCCCCC
Q 021149 85 FLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCD 164 (316)
Q Consensus 85 fLhPdiv~~YdYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~ish~iT~r~~~~~vHr~~~~~~~~~~C~ 164 (316)
.+. ...+|||++.|+|..++...+.++++.+...+..+.++........ ..++.-......+... .... ..
T Consensus 81 ~~~---~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~--~~ 151 (228)
T PF13641_consen 81 ALA---AARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDR--NWLTRLQDLFFARWHL--RFRS--GR 151 (228)
T ss_dssp HHH---H---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCC--CEEEE-TT--S-EETT--TS-T--T-
T ss_pred HHH---hcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCC--CHHHHHHHHHHhhhhh--hhhh--hh
Confidence 331 1459999999999999999999999999778888888665332211 1111111000000000 0000 00
Q ss_pred CCCCCCCccceEEEeccccchHHHHHHhhhccCCCcccchhhhhhhhhhcCCCCCcEEEEeeceEEeccCCC
Q 021149 165 DYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPT 236 (316)
Q Consensus 165 ~~~~~ppcTgFVEiMaPVFSR~Awrcvw~miqndlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~~pt 236 (316)
.....+.++| -+=+|+|++++.+-. ++. ..-|=|+.+...+.. .+.+|.......|.|...++
T Consensus 152 ~~~~~~~~~G----~~~~~rr~~~~~~g~--fd~--~~~~eD~~l~~r~~~-~G~~~~~~~~~~v~~~~~~~ 214 (228)
T PF13641_consen 152 RALGVAFLSG----SGMLFRRSALEEVGG--FDP--FILGEDFDLCLRLRA-AGWRIVYAPDALVYHEEPSS 214 (228)
T ss_dssp B----S-B------TEEEEEHHHHHHH-S----S--SSSSHHHHHHHHHHH-TT--EEEEEEEEEEE--SSS
T ss_pred cccceeeccC----cEEEEEHHHHHHhCC--CCC--CCcccHHHHHHHHHH-CCCcEEEECCcEEEEeCCCC
Confidence 0000111221 123689999998842 234 444578877644432 45789999888888886444
No 10
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=86.51 E-value=0.49 Score=40.69 Aligned_cols=129 Identities=13% Similarity=0.006 Sum_probs=72.3
Q ss_pred ccccEEEEeccccccCCCChHHHHHHHHH-hCCcccccccC--CCCCceecccccccc--CcccceeeeeccCCCCCCCC
Q 021149 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKD-EGLEISQPALD--PVKSEVHHPITARRR--NSKAHRRMYKYKGSGRCDDY 166 (316)
Q Consensus 92 ~~YdYIflwDDDL~vd~f~i~ry~~Ivr~-~gLeISQPALd--~~s~~ish~iT~r~~--~~~vHr~~~~~~~~~~C~~~ 166 (316)
+.+|||++.|+|..++...+.++++.+.+ .++.+.++... .... .. .+..... ...+.+.+. .+...+
T Consensus 83 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~--~~~~~~--- 155 (234)
T cd06421 83 TTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDP-FD-WLADGAPNEQELFYGVIQ--PGRDRW--- 155 (234)
T ss_pred CCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCc-ch-hHHHHHHHHHHHHHHHHH--HHHhhc---
Confidence 48999999999999999999999999987 77777776421 1111 10 0111000 000000000 000000
Q ss_pred CCCCCccceEEEeccccchHHHHHHhhhccCCCcccchhhhhhhhhhcCCCCCcEEEEeeceEEeccCCCC
Q 021149 167 STAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTL 237 (316)
Q Consensus 167 ~~~ppcTgFVEiMaPVFSR~Awrcvw~miqndlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~~ptl 237 (316)
++ .++=.+.=+|+|++++.+-.+ +. ...+-|+.+..-+. ..+.+|..++...+.|...+++
T Consensus 156 ----~~-~~~~g~~~~~r~~~~~~ig~~--~~--~~~~eD~~l~~r~~-~~g~~i~~~~~~~~~~~~~~~~ 216 (234)
T cd06421 156 ----GA-AFCCGSGAVVRREALDEIGGF--PT--DSVTEDLATSLRLH-AKGWRSVYVPEPLAAGLAPETL 216 (234)
T ss_pred ----CC-ceecCceeeEeHHHHHHhCCC--Cc--cceeccHHHHHHHH-HcCceEEEecCccccccCCccH
Confidence 11 122234557899999987533 22 34577888864332 2356888888777776654433
No 11
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=82.46 E-value=0.98 Score=38.12 Aligned_cols=119 Identities=12% Similarity=0.017 Sum_probs=63.7
Q ss_pred cccccEEEEeccccccCCCChHHHHHHHHHh-CCcccccccCCC--CCceeccccccccCcccceeeeeccCCCCCCCCC
Q 021149 91 VAEYNYIFLWDEDIGVENFNPRRYLSIVKDE-GLEISQPALDPV--KSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYS 167 (316)
Q Consensus 91 v~~YdYIflwDDDL~vd~f~i~ry~~Ivr~~-gLeISQPALd~~--s~~ish~iT~r~~~~~vHr~~~~~~~~~~C~~~~ 167 (316)
.+.+|||++.|+|..++.-.+.+.++.+.++ +..|..+....- .+.-.+... .+.. .+..+. -....|
T Consensus 78 ~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~-~~~~~~---- 148 (201)
T cd04195 78 HCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRR--LPTS--HDDILK-FARRRS---- 148 (201)
T ss_pred hcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeecccc--CCCC--HHHHHH-HhccCC----
Confidence 3589999999999999988888988887654 566665543211 111111111 0100 000000 000111
Q ss_pred CCCCccceEEEeccccchHHHHHHhhhccCCCcccchhhhhhhhhhcCCCCCcEEEEeeceEE
Q 021149 168 TAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIV 230 (316)
Q Consensus 168 ~~ppcTgFVEiMaPVFSR~Awrcvw~miqndlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~ 230 (316)
++..++=+|.|+++..+-.+ ... -.+-|+.+...+- ..+.++..+....+.
T Consensus 149 -------~~~~~~~~~rr~~~~~~g~~--~~~--~~~eD~~~~~r~~-~~g~~~~~~~~~~~~ 199 (201)
T cd04195 149 -------PFNHPTVMFRKSKVLAVGGY--QDL--PLVEDYALWARML-ANGARFANLPEILVK 199 (201)
T ss_pred -------CCCChHHhhhHHHHHHcCCc--CCC--CCchHHHHHHHHH-HcCCceecccHHHhh
Confidence 11111236889999887532 232 4677888765542 235678877655443
No 12
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=77.44 E-value=2.9 Score=35.78 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=26.8
Q ss_pred ccccEEEEeccccccCCCChHHHHHHHHHhCCcccc
Q 021149 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQ 127 (316)
Q Consensus 92 ~~YdYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQ 127 (316)
+..|||++.|+|..++...+.++++.+.+.+..+..
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 112 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVI 112 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 456999999999888777777888876555555443
No 13
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=76.09 E-value=5.1 Score=32.96 Aligned_cols=37 Identities=8% Similarity=-0.049 Sum_probs=27.4
Q ss_pred ccccEEEEeccccccCCCChHHHHHHH-HHhCCccccc
Q 021149 92 AEYNYIFLWDEDIGVENFNPRRYLSIV-KDEGLEISQP 128 (316)
Q Consensus 92 ~~YdYIflwDDDL~vd~f~i~ry~~Iv-r~~gLeISQP 128 (316)
+..|||++.|+|..++...+.+.++.+ ...+..+..+
T Consensus 74 a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g 111 (202)
T cd06433 74 ATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYG 111 (202)
T ss_pred cCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEe
Confidence 468999999999999998888888444 3334554443
No 14
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=76.01 E-value=14 Score=34.70 Aligned_cols=138 Identities=14% Similarity=0.022 Sum_probs=83.2
Q ss_pred ccEEEEeccccccCCCChHHHHHHHHHhCCcccccccCCCCCceeccccccccCcccceeeeeccCCCCCCCC----CCC
Q 021149 94 YNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDY----STA 169 (316)
Q Consensus 94 YdYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~ish~iT~r~~~~~vHr~~~~~~~~~~C~~~----~~~ 169 (316)
|+|++++++|..++...++++++.+++.+-...-|++-.+...-.+. ..+.......... .....+... ...
T Consensus 85 ~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 160 (305)
T COG1216 85 DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYI-DRRGGESDGLTGG---WRASPLLEIAPDLSSY 160 (305)
T ss_pred CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcch-heecccccccccc---ceecccccccccccch
Confidence 55999999999999999999999999998887777765432211111 1111111000000 000011110 111
Q ss_pred CCccceEEEeccccchHHHHHHhhhccCCCcccchhhhhhhhhhcCCCCCcEEEEeeceEEeccCCCCC
Q 021149 170 PPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTLG 238 (316)
Q Consensus 170 ppcTgFVEiMaPVFSR~Awrcvw~miqndlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~~ptlg 238 (316)
+.+-+++..-+-+++|++++.+=. +...-=...-|.-|..-+. ..+.+|..+=+-.|.|..--+-+
T Consensus 161 ~~~~~~~~G~~~li~~~~~~~vG~--~de~~F~y~eD~D~~~R~~-~~G~~i~~~p~a~i~H~~g~s~~ 226 (305)
T COG1216 161 LEVVASLSGACLLIRREAFEKVGG--FDERFFIYYEDVDLCLRAR-KAGYKIYYVPDAIIYHKIGSSKG 226 (305)
T ss_pred hhhhhhcceeeeEEcHHHHHHhCC--CCcccceeehHHHHHHHHH-HcCCeEEEeeccEEEEeccCCCC
Confidence 223336677678899999998842 3444555666777755553 23458999999999998744444
No 15
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=74.94 E-value=7.3 Score=34.79 Aligned_cols=109 Identities=16% Similarity=0.185 Sum_probs=59.7
Q ss_pred CCCcEEEEEecccchhhHHHHhh---c-CC-CCCcEEEEEEecCccCccccc--ccc----CceeEEEee--ccchhhhh
Q 021149 16 PPMNLLAIAAGIKQKKIVDQIVR---K-FP-SKDFVVMLFHYDGVVDEWKDL--VWA----DRAIHVSAA--NQTKWWFA 82 (316)
Q Consensus 16 ~~k~Lva~~vG~kqk~~vd~~v~---k-f~-~~nF~v~LfhYDg~v~~w~d~--ews----~~aiHv~a~--kqtKWw~a 82 (316)
.++..|++|+ ++....+..+++ + .. ..+|.|+++. ||+.|+=.++ ++. ...+.+... +..+---.
T Consensus 8 ~~~vsVvIp~-yne~~~l~~~l~~l~~~~~~~~~~eiivvD-dgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~ 85 (243)
T PLN02726 8 AMKYSIIVPT-YNERLNIALIVYLIFKALQDVKDFEIIVVD-DGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAY 85 (243)
T ss_pred CceEEEEEcc-CCchhhHHHHHHHHHHHhccCCCeEEEEEe-CCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHH
Confidence 4567788887 444444443322 2 11 1266666654 7776642111 111 112333222 22331111
Q ss_pred hhccCccccccccEEEEeccccccCCCChHHHHHHHHHhCCcccccc
Q 021149 83 KRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA 129 (316)
Q Consensus 83 kRfLhPdiv~~YdYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPA 129 (316)
+.-+ -.+..|||++.|.|...+...+.++++.+.+.+..+....
T Consensus 86 n~g~---~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 129 (243)
T PLN02726 86 IHGL---KHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGT 129 (243)
T ss_pred HHHH---HHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEc
Confidence 1101 1357899999999999998889999998877777665443
No 16
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=73.03 E-value=3.5 Score=36.09 Aligned_cols=132 Identities=15% Similarity=0.064 Sum_probs=69.4
Q ss_pred ccccEEEEeccccccCCCChHHHHHHHHHhCCcccccccCCCCCceecccc-ccccCcccceeeeeccCCCCCCCCCCCC
Q 021149 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPIT-ARRRNSKAHRRMYKYKGSGRCDDYSTAP 170 (316)
Q Consensus 92 ~~YdYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~ish~iT-~r~~~~~vHr~~~~~~~~~~C~~~~~~p 170 (316)
+.+|||++.|.|..++...++++..++...+..+.|+-+......-++ ++ .+.-....|-. .+..+. ...
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~-----~~~ 156 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANYSL-LTRVQAMSLDYHFT---IEQVAR-----SST 156 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCCch-hhHhhhhhHHhhhh---HhHhhH-----hhc
Confidence 589999999999999988888877777655665666543210000000 10 00000000000 000000 000
Q ss_pred CccceEEEeccccchHHHHHHhhhccCCCcccchhhhhhhhhhcCCCCCcEEEEeeceEEeccCCCC
Q 021149 171 PCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTL 237 (316)
Q Consensus 171 pcTgFVEiMaPVFSR~Awrcvw~miqndlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~~ptl 237 (316)
.+...+=.++-+|+|++|..+-.+ .+. ..+=|+.+...+. .++.++..+....|.|...+|+
T Consensus 157 ~~~~~~~g~~~~~rr~~~~~vgg~--~~~--~~~ED~~l~~rl~-~~G~~~~~~~~~~v~~~~~~~~ 218 (232)
T cd06437 157 GLFFNFNGTAGVWRKECIEDAGGW--NHD--TLTEDLDLSYRAQ-LKGWKFVYLDDVVVPAELPASM 218 (232)
T ss_pred CCeEEeccchhhhhHHHHHHhCCC--CCC--cchhhHHHHHHHH-HCCCeEEEeccceeeeeCCcCH
Confidence 011111122237999999887432 222 2457877765543 2457899998888777765444
No 17
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=68.12 E-value=6 Score=33.61 Aligned_cols=124 Identities=17% Similarity=0.122 Sum_probs=66.8
Q ss_pred EEEEeccccccCCCChHHHHHHHHHhCCcccccccCCCCCceeccccccccCccc--ceeeee-ccCCCCCCCCCCCCCc
Q 021149 96 YIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKA--HRRMYK-YKGSGRCDDYSTAPPC 172 (316)
Q Consensus 96 YIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~ish~iT~r~~~~~v--Hr~~~~-~~~~~~C~~~~~~ppc 172 (316)
||.+.|+|..++.....+..+.++.-+..+.|+...... ....++.-...... |..... ....+.|.
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 70 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRN--RGSLLTRLQDFEYAISHGLSRLSQSSLGRPL-------- 70 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecC--CCChhheeehhhhhhhhhhhHHHHHhcCCCc--------
Confidence 789999999999988899988888558888888876542 11112221111100 000000 00111111
Q ss_pred cceEEEeccccchHHHHHHhhhccCCCcccchhhhhhhhhhcCCCCCcEEEEeeceEEeccCC
Q 021149 173 IGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLP 235 (316)
Q Consensus 173 TgFVEiMaPVFSR~Awrcvw~miqndlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~~p 235 (316)
++=.-.=+|++++++.+= -.+ ..--.|=|+.+..-+. ..+.+++.++...+.|...+
T Consensus 71 --~~~G~~~~~r~~~l~~vg--~~~-~~~~~~ED~~l~~~l~-~~G~~~~~~~~~~~~~~~p~ 127 (193)
T PF13632_consen 71 --FLSGSGMLFRREALREVG--GFD-DPFSIGEDMDLGFRLR-RAGYRIVYVPDAIVYTEAPP 127 (193)
T ss_pred --cccCcceeeeHHHHHHhC--ccc-ccccccchHHHHHHHH-HCCCEEEEecccceeeeCCC
Confidence 122334578899998772 112 1122335666643321 23478999988844444333
No 18
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=67.74 E-value=2.9 Score=36.13 Aligned_cols=41 Identities=12% Similarity=-0.021 Sum_probs=36.0
Q ss_pred ccccEEEEeccccccCCCChHHHHHHHHHhCCcccccccCC
Q 021149 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDP 132 (316)
Q Consensus 92 ~~YdYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~ 132 (316)
+.+|||++.|+|..++...+.+.++.+...++.+.++....
T Consensus 76 a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~ 116 (235)
T cd06434 76 VTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRI 116 (235)
T ss_pred hCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEe
Confidence 48999999999999999999999999988888888877544
No 19
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=66.76 E-value=4.1 Score=35.76 Aligned_cols=39 Identities=10% Similarity=0.012 Sum_probs=32.0
Q ss_pred cccEEEEeccccccCCCChHHHHHHHHHhCCcccccccC
Q 021149 93 EYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALD 131 (316)
Q Consensus 93 ~YdYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd 131 (316)
..|||++.|+|..++...+.++++.++..+..+.++...
T Consensus 109 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~ 147 (251)
T cd06439 109 TGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELV 147 (251)
T ss_pred CCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEE
Confidence 469999999999999888889888887667777666554
No 20
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=66.61 E-value=4.5 Score=31.81 Aligned_cols=38 Identities=13% Similarity=0.145 Sum_probs=29.9
Q ss_pred ccccEEEEeccccccCCCChHHHHHHHHHhCCcccccc
Q 021149 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA 129 (316)
Q Consensus 92 ~~YdYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPA 129 (316)
+..+||++.|+|..++.-.+.++++.+++.+-.+.-+.
T Consensus 77 a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 77 AKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGS 114 (169)
T ss_dssp --SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred cceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence 46679999999999999999999999999776554443
No 21
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=63.20 E-value=4.7 Score=34.73 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=27.8
Q ss_pred ccccEEEEeccccccCCCChHHHHHHHHHhCCccccc
Q 021149 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQP 128 (316)
Q Consensus 92 ~~YdYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQP 128 (316)
+..|||++.|.|...+...+.++++.+...+..+...
T Consensus 81 a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g 117 (211)
T cd04188 81 ARGDYILFADADLATPFEELEKLEEALKTSGYDIAIG 117 (211)
T ss_pred hcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 3459999999999888888888887765555555443
No 22
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=62.89 E-value=5 Score=35.31 Aligned_cols=125 Identities=19% Similarity=0.108 Sum_probs=74.4
Q ss_pred ccccEEEEeccccccCCCChHHHHHHHHH--hCCcccccccCCCCCceeccccccccCcccceeeeeccCCCCCCCCCCC
Q 021149 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKD--EGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTA 169 (316)
Q Consensus 92 ~~YdYIflwDDDL~vd~f~i~ry~~Ivr~--~gLeISQPALd~~s~~ish~iT~r~~~~~vHr~~~~~~~~~~C~~~~~~ 169 (316)
+.||||++.|+|+.++.-.+.++..-+.. .||-=+-|-..+.++. .-.+-.-...+|-.++..
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~---~~~l~~~~~~~~~~~~~a------------ 94 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGF---WSRLEAAFFNFLPGVLQA------------ 94 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCH---HHHHHHHHHhHHHHHHHH------------
Confidence 89999999999999998888888775554 4443233333332221 111111111122111100
Q ss_pred CCccceEEEeccccchHHHHHHhhhccCCCcccchhhhhhhhhhcCCCCCcEEEEeeceEEeccCC
Q 021149 170 PPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLP 235 (316)
Q Consensus 170 ppcTgFVEiMaPVFSR~Awrcvw~miqndlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~~p 235 (316)
..-+.|+=.|+=.|+|++++.+= -++.+.+.-.=||.++..+. .++.+|...... |+++.+|
T Consensus 95 ~~~~~~~~G~~m~~rr~~L~~~G--G~~~l~~~ladD~~l~~~~~-~~G~~v~~~~~~-v~~~~~~ 156 (175)
T PF13506_consen 95 LGGAPFAWGGSMAFRREALEEIG--GFEALADYLADDYALGRRLR-ARGYRVVLSPYP-VVQTSVP 156 (175)
T ss_pred hcCCCceecceeeeEHHHHHHcc--cHHHHhhhhhHHHHHHHHHH-HCCCeEEEcchh-eeecccC
Confidence 11245677888889999998762 23555667788999998875 356777766533 4555544
No 23
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=60.10 E-value=5.2 Score=34.83 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=31.3
Q ss_pred cccEEEEeccccccCCCChHHHHHHHHHhCCcccccc
Q 021149 93 EYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA 129 (316)
Q Consensus 93 ~YdYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPA 129 (316)
.||||++.|.|..++.-.+.++++.++..+..+.++.
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 120 (236)
T cd06435 84 DAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAP 120 (236)
T ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecC
Confidence 4999999999999999999999988876677776653
No 24
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=58.06 E-value=4.2 Score=38.10 Aligned_cols=126 Identities=21% Similarity=0.228 Sum_probs=55.9
Q ss_pred cccccEEEEeccccccCCCChHHHHHHHHHhCCcccccccCCCCCceeccccccccCcccceeeeeccCCCCCCCCCCCC
Q 021149 91 VAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAP 170 (316)
Q Consensus 91 v~~YdYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~ish~iT~r~~~~~vHr~~~~~~~~~~C~~~~~~p 170 (316)
-..+|++++.|||.-| ++++++++...|+ -++|-.=...+ ..++++.-.+.. .+ + ...
T Consensus 84 ~~~~~Wf~~~DDDtyv---~~~~L~~~L~~~~--~~~~~yiG~~~-~~~~~~~~~~~~-~~------~---------~~~ 141 (252)
T PF02434_consen 84 NSDKDWFCFADDDTYV---NVENLRRLLSKYD--PSEPIYIGRPS-GDRPIEIIHRFN-PN------K---------SKD 141 (252)
T ss_dssp HHT-SEEEEEETTEEE----HHHHHHHHTTS---TTS--EEE-EE-----------------------------------
T ss_pred cCCceEEEEEeCCcee---cHHHHHHHHhhCC--CccCEEeeeec-cCccceeecccc-cc------c---------cCc
Confidence 3578999999999987 6777777777654 23443211111 222222211000 00 0 000
Q ss_pred CccceEEE-eccccchHHHHHH--hh----hccCCCcccchhhhhhhhhhcCCCCCcEEEEeeceEEeccCCCCCCCC
Q 021149 171 PCIGWVEM-MAPVFSRAAWRCA--WY----MIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTLGVTT 241 (316)
Q Consensus 171 pcTgFVEi-MaPVFSR~Awrcv--w~----miqndlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~~ptlg~~~ 241 (316)
.+-.|.-+ -.=|+||.+.+.+ |. .++.+....+.=|..+|+|++. --+|-++++ .-.|.-.|.|....
T Consensus 142 ~~~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~--~lgv~lt~s-~~fhs~~~~l~~~~ 216 (252)
T PF02434_consen 142 SGFWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIEN--LLGVPLTHS-PLFHSHLENLQDYN 216 (252)
T ss_dssp ----EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHH--TT---EEE--TT---SSS-GGG--
T ss_pred CceEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHh--cCCcceeec-hhhcccCcccccCC
Confidence 11123222 2347899998777 32 2333444467889999999963 235556665 66788888876554
No 25
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=54.13 E-value=24 Score=30.49 Aligned_cols=33 Identities=12% Similarity=-0.013 Sum_probs=27.2
Q ss_pred cccccEEEEeccccccCCCChHHHHHHHHHhCC
Q 021149 91 VAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGL 123 (316)
Q Consensus 91 v~~YdYIflwDDDL~vd~f~i~ry~~Ivr~~gL 123 (316)
.+..|||++.|.|..++...+.+.+..+.+...
T Consensus 82 ~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~ 114 (219)
T cd06913 82 QSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPN 114 (219)
T ss_pred hcCCCEEEEECCCccCChhHHHHHHHHHHhCCC
Confidence 357899999999999998888888877766543
No 26
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=52.37 E-value=23 Score=34.26 Aligned_cols=190 Identities=17% Similarity=0.181 Sum_probs=93.5
Q ss_pred CCcEEEEEecccchhhHHHHhhcC-----------CCCCcEEEEEEecCccCcccc--ccccCc------eeEEEe--ec
Q 021149 17 PMNLLAIAAGIKQKKIVDQIVRKF-----------PSKDFVVMLFHYDGVVDEWKD--LVWADR------AIHVSA--AN 75 (316)
Q Consensus 17 ~k~Lva~~vG~kqk~~vd~~v~kf-----------~~~nF~v~LfhYDg~v~~w~d--~ews~~------aiHv~a--~k 75 (316)
+.--|++|| ++...++..+++.- +..++.|++ .-||+.|+=.+ -++.+. .+++.. .+
T Consensus 70 ~~isVVIP~-yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIV-VDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N 147 (333)
T PTZ00260 70 VDLSIVIPA-YNEEDRLPKMLKETIKYLESRSRKDPKFKYEIII-VNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRN 147 (333)
T ss_pred eEEEEEEee-CCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEE-EeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCC
Confidence 345566665 44445555544421 122566554 46888775222 111111 245432 35
Q ss_pred cchhhhhhhccCccccccccEEEEeccccccCCCChHHHHHHHHH---hCCcccccccCCC-CC-ceecccccccc-Ccc
Q 021149 76 QTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKD---EGLEISQPALDPV-KS-EVHHPITARRR-NSK 149 (316)
Q Consensus 76 qtKWw~akRfLhPdiv~~YdYIflwDDDL~vd~f~i~ry~~Ivr~---~gLeISQPALd~~-s~-~ish~iT~r~~-~~~ 149 (316)
+.|-.-.+.=+ -.+..|||++.|.|...+..++.++++.+++ .+.++..-+.... .+ ....+--.|+- ...
T Consensus 148 ~G~~~A~~~Gi---~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~~~ 224 (333)
T PTZ00260 148 KGKGGAVRIGM---LASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILMYG 224 (333)
T ss_pred CChHHHHHHHH---HHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHHHHH
Confidence 56644222211 1256899999999999999999999999875 4555444332211 01 01111111111 111
Q ss_pred cceeeeeccCCCCCCCCCCCCCccceEEEeccccchHHHHHHhhhccCCCcccchhhhhhhhhhcCCCCCcEEEEee
Q 021149 150 AHRRMYKYKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDS 226 (316)
Q Consensus 150 vHr~~~~~~~~~~C~~~~~~ppcTgFVEiMaPVFSR~Awrcvw~miqndlvhGWGLD~~w~~c~~g~~~~kiGVVDa 226 (316)
+|... +.- |... ..-..+||- +|+|++++.+.. +-...+|+.|.-+-..+. ..+.+|.-|--
T Consensus 225 ~~~l~-~~~----~~~~-i~D~~~Gfk-----~~~r~~~~~i~~---~~~~~~~~fd~Ell~~a~-~~g~~I~EvPv 286 (333)
T PTZ00260 225 FHFIV-NTI----CGTN-LKDTQCGFK-----LFTRETARIIFP---SLHLERWAFDIEIVMIAQ-KLNLPIAEVPV 286 (333)
T ss_pred HHHHH-HHH----cCCC-cccCCCCeE-----EEeHHHHHHHhh---hccccCccchHHHHHHHH-HcCCCEEEEce
Confidence 11100 000 1100 001122333 789999987642 223358888888877764 22344554433
No 27
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=46.85 E-value=45 Score=29.26 Aligned_cols=165 Identities=18% Similarity=0.191 Sum_probs=84.4
Q ss_pred CCCcEEEEEecccc--hhhHHHHhhcCCCCCcEEEEEEecCccCccccccccCceeEEEeeccchhhhhhhccCcccccc
Q 021149 16 PPMNLLAIAAGIKQ--KKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAE 93 (316)
Q Consensus 16 ~~k~Lva~~vG~kq--k~~vd~~v~kf~~~nF~v~LfhYDg~v~~w~d~ews~~aiHv~a~kqtKWw~akRfLhPdiv~~ 93 (316)
..+.-+.+=+|... ...++..+.+-....=||+++-+ +|.+..+.. +.+ -.-+|- .+. ...
T Consensus 18 ~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~---~D~y~nlt~--K~~-----~~~~w~-~~~------c~~ 80 (195)
T PF01762_consen 18 GVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDF---VDSYRNLTL--KTL-----AGLKWA-SKH------CPN 80 (195)
T ss_pred CCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeec---ccccchhhH--HHH-----HHHHHH-Hhh------CCc
Confidence 35566777778877 45566666653223338877654 344443311 111 112222 221 125
Q ss_pred ccEEEEeccccccCCCChHHHHHHHHHhCCcccccccCCCCCceeccccccccCccc--ceeeeeccCCCCCCCCCCCCC
Q 021149 94 YNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKA--HRRMYKYKGSGRCDDYSTAPP 171 (316)
Q Consensus 94 YdYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~ish~iT~r~~~~~v--Hr~~~~~~~~~~C~~~~~~pp 171 (316)
++||+..|||+-| ++.++++..++.-.+.+.+.+... .....-..|.+.++. ....| ....-||
T Consensus 81 ~~~v~k~DDD~~v---n~~~l~~~L~~~~~~~~~~~~~g~--~~~~~~~~r~~~~kw~v~~~~y---------~~~~yP~ 146 (195)
T PF01762_consen 81 AKYVLKVDDDVFV---NPDRLVSFLKSLKQDPSKNSIYGG--CIKNGPPIRDPSSKWYVSEEEY---------PDDYYPP 146 (195)
T ss_pred hhheeecCcEEEE---ehHHhhhhhhhcccCccccccccc--cccCCccccccccCceeeeeec---------ccccCCC
Confidence 8999999999988 556666666666333333333321 122222333333321 11111 0112233
Q ss_pred ccceEEEeccccchHHHHHHhhhccCCCcccchhhhhhhhhhcC
Q 021149 172 CIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQG 215 (316)
Q Consensus 172 cTgFVEiMaPVFSR~Awrcvw~miqndlvhGWGLD~~w~~c~~g 215 (316)
|..+.+=++|+++.+.+....+ ....-+-=|-.+|.|++.
T Consensus 147 ---y~~G~~yvls~~~v~~i~~~~~-~~~~~~~eDv~iGi~~~~ 186 (195)
T PF01762_consen 147 ---YCSGGGYVLSSDVVKRIYKASS-HTPFFPLEDVFIGILAEK 186 (195)
T ss_pred ---cCCCCeEEecHHHHHHHHHHhh-cCCCCCchHHHHHHHHHH
Confidence 3446777899999988764322 222333445556888863
No 28
>PF12621 DUF3779: Phosphate metabolism protein ; InterPro: IPR022257 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02714 from PFAM. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=46.82 E-value=15 Score=29.89 Aligned_cols=52 Identities=25% Similarity=0.455 Sum_probs=38.8
Q ss_pred hhccCccccccccEEEEeccccccCCCChHHHHHHHHHhCCcccccc--cCCCCCceec
Q 021149 83 KRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA--LDPVKSEVHH 139 (316)
Q Consensus 83 kRfLhPdiv~~YdYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPA--Ld~~s~~ish 139 (316)
.-|+||.+.++--.|||+-|++|+.... ++-.++.|+.||.-+ |+. +|.+.|
T Consensus 34 ~ay~~Pa~~~~~P~lWIP~D~~GvS~~e----i~~~~~~~v~~Sd~gA~lde-kgkv~~ 87 (95)
T PF12621_consen 34 HAYLHPAVSAPQPILWIPRDPLGVSRQE----IEETRKVGVPISDEGATLDE-KGKVVW 87 (95)
T ss_pred hccCCHhHcCCCCeEEeecCCCCCCHHH----HHHhhcCCeEEECCCeEEcc-CCCEEE
Confidence 4489999999999999999999997644 455677778887655 343 344444
No 29
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=45.39 E-value=41 Score=31.31 Aligned_cols=95 Identities=16% Similarity=0.198 Sum_probs=52.7
Q ss_pred EEEEecccchh-----hHHHHh---hcC-CCCCcEEEEEEecCccCccc-cc-ccc--Ccee-EEEeeccchhh-hhhhc
Q 021149 21 LAIAAGIKQKK-----IVDQIV---RKF-PSKDFVVMLFHYDGVVDEWK-DL-VWA--DRAI-HVSAANQTKWW-FAKRF 85 (316)
Q Consensus 21 va~~vG~kqk~-----~vd~~v---~kf-~~~nF~v~LfhYDg~v~~w~-d~-ews--~~ai-Hv~a~kqtKWw-~akRf 85 (316)
|++||..+... .+..++ +++ ...++.|++..++.. +++. .+ +.. ...+ .+....+...| .++..
T Consensus 2 iIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~eiIvvd~~s~-~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~ar 80 (281)
T PF10111_consen 2 IIIPVRNRSERPDILERLRNCLESLSQFQSDPDFEIIVVDDGSS-DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAKAR 80 (281)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCc-hhHHHHHHHHHhccCceEEEEcCCCCCCcCHHHHH
Confidence 68899988842 332223 332 356888888887664 3341 11 111 1222 11111122222 22211
Q ss_pred cCccccccccEEEEeccccccCCCChHHHHH
Q 021149 86 LHPDIVAEYNYIFLWDEDIGVENFNPRRYLS 116 (316)
Q Consensus 86 LhPdiv~~YdYIflwDDDL~vd~f~i~ry~~ 116 (316)
--.=-.+.-|||+++|-|+-++...+.+++.
T Consensus 81 N~g~~~A~~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 81 NIGAKYARGDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred HHHHHHcCCCEEEEEcCCeeeCHHHHHHHHH
Confidence 1122236899999999999999988888888
No 30
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=44.46 E-value=19 Score=27.29 Aligned_cols=22 Identities=23% Similarity=0.099 Sum_probs=19.2
Q ss_pred cccEEEEeccccccCCCChHHH
Q 021149 93 EYNYIFLWDEDIGVENFNPRRY 114 (316)
Q Consensus 93 ~YdYIflwDDDL~vd~f~i~ry 114 (316)
.+||+++.|+|..++...+.++
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~ 98 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERL 98 (156)
T ss_pred cCCEEEEECCCCccCccHHHHH
Confidence 7999999999999888777776
No 31
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=44.23 E-value=13 Score=28.93 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=26.7
Q ss_pred cccEEEEeccccccCCCChHHH-HHHHHHhCCccccccc
Q 021149 93 EYNYIFLWDEDIGVENFNPRRY-LSIVKDEGLEISQPAL 130 (316)
Q Consensus 93 ~YdYIflwDDDL~vd~f~i~ry-~~Ivr~~gLeISQPAL 130 (316)
.+|||++.|+|..++...+.++ ..+.+..+..+..+..
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~ 116 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRV 116 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeE
Confidence 8999999999999887777777 3444444454544444
No 32
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=43.20 E-value=37 Score=30.90 Aligned_cols=89 Identities=15% Similarity=0.107 Sum_probs=54.6
Q ss_pred CCcEEEEEecccchhhHHHHhhcCCCCCcEEEEEEecCccCccccccccCceeEEEeeccchhhhhhhccCccccccccE
Q 021149 17 PMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNY 96 (316)
Q Consensus 17 ~k~Lva~~vG~kqk~~vd~~v~kf~~~nF~v~LfhYDg~v~~w~d~ews~~aiHv~a~kqtKWw~akRfLhPdiv~~YdY 96 (316)
+-.+.+++-|++.. +.+++-+-....++.+-+..++- .++..+++.. -| -++.- ..||+=|+++..||-
T Consensus 30 ~~~~~il~~~is~~-~~~~L~~~~~~~~~~i~~~~~~~--~~~~~~~~~~--~~-----~~~~~-y~RL~i~~llp~~~k 98 (246)
T cd00505 30 PLRFHVLTNPLSDT-FKAALDNLRKLYNFNYELIPVDI--LDSVDSEHLK--RP-----IKIVT-LTKLHLPNLVPDYDK 98 (246)
T ss_pred CeEEEEEEccccHH-HHHHHHHHHhccCceEEEEeccc--cCcchhhhhc--Cc-----cccce-eHHHHHHHHhhccCe
Confidence 45677777776653 44443322222467777766642 3444443320 01 12222 456777999888999
Q ss_pred EEEeccccccCCCChHHHHHH
Q 021149 97 IFLWDEDIGVENFNPRRYLSI 117 (316)
Q Consensus 97 IflwDDDL~vd~f~i~ry~~I 117 (316)
|...|.|+.+- -+++.++++
T Consensus 99 vlYLD~D~iv~-~di~~L~~~ 118 (246)
T cd00505 99 ILYVDADILVL-TDIDELWDT 118 (246)
T ss_pred EEEEcCCeeec-cCHHHHhhc
Confidence 99999999986 688888865
No 33
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=42.77 E-value=27 Score=29.06 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=25.6
Q ss_pred ccccEEEEeccccccCCCChHHHHHHHHHhCCcccc
Q 021149 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQ 127 (316)
Q Consensus 92 ~~YdYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQ 127 (316)
+..|||++.|+|...+.-.+.++++.+ +.+.++.-
T Consensus 79 a~~d~i~~~D~D~~~~~~~l~~l~~~~-~~~~~~v~ 113 (181)
T cd04187 79 ARGDAVITMDADLQDPPELIPEMLAKW-EEGYDVVY 113 (181)
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHH-hCCCcEEE
Confidence 345999999999998877778888763 34545433
No 34
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=41.59 E-value=21 Score=29.97 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=29.7
Q ss_pred ccccEEEEeccccccCCCChHHHHHHH-HHhCCccccc
Q 021149 92 AEYNYIFLWDEDIGVENFNPRRYLSIV-KDEGLEISQP 128 (316)
Q Consensus 92 ~~YdYIflwDDDL~vd~f~i~ry~~Iv-r~~gLeISQP 128 (316)
+.+|||++.|+|-.++...+.++++.+ +..+..+..+
T Consensus 82 a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~ 119 (202)
T cd04184 82 ATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYS 119 (202)
T ss_pred hcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEc
Confidence 568999999999999888889999887 5555656544
No 35
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=40.38 E-value=22 Score=30.20 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=29.2
Q ss_pred ccccEEEEeccccccCCCChHHHHHHHHHhCCcccccc
Q 021149 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA 129 (316)
Q Consensus 92 ~~YdYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPA 129 (316)
+.+|||++.|+|..++.-.++++++.+.+.+-.+.+.+
T Consensus 81 ~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 118 (229)
T cd04192 81 AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGP 118 (229)
T ss_pred hcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeee
Confidence 56899999999999988888888886666554444433
No 36
>KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism]
Probab=38.41 E-value=46 Score=33.39 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=63.6
Q ss_pred CCcEEEEEecccchhhHHHHhhcCCCCCcEEEE-EEecCccCccccccccCceeEEEeeccchhhhhhhccCcccc
Q 021149 17 PMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVML-FHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIV 91 (316)
Q Consensus 17 ~k~Lva~~vG~kqk~~vd~~v~kf~~~nF~v~L-fhYDg~v~~w~d~ews~~aiHv~a~kqtKWw~akRfLhPdiv 91 (316)
++.|++--+|.--.+.++.++.++++.+|..++ +-|-+....=....||-+.-.++...-.-|-..+-|+|++|.
T Consensus 7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~id 82 (331)
T KOG0747|consen 7 KNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEPVRNSPNYKFVEGDIADADLVLYLFETEEID 82 (331)
T ss_pred ceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccchhhhhccCCCceEeeccccchHHHHhhhccCchh
Confidence 567889999999999999999999988887766 677777666677889999999988888889999999998654
No 37
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=36.93 E-value=25 Score=29.94 Aligned_cols=94 Identities=9% Similarity=0.054 Sum_probs=52.8
Q ss_pred HHHHhhcCCCCCcEEEEEEecCccCccccccccCceeEEEeeccchhhhhhhccCccccccccEEEEeccccccCCCChH
Q 021149 33 VDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPR 112 (316)
Q Consensus 33 vd~~v~kf~~~nF~v~LfhYDg~v~~w~d~ews~~aiHv~a~kqtKWw~akRfLhPdiv~~YdYIflwDDDL~vd~f~i~ 112 (316)
++.+...- ..++.|++. -|+..|+=.++.=. .-+++...++.+-.-...-+ -.+..|||++.|+|..++...++
T Consensus 18 l~sl~~q~-~~~~evivv-dd~s~d~~~~~~~~-~~~~~~~~~~g~~~a~n~g~---~~a~~~~i~~~D~D~~~~~~~l~ 91 (221)
T cd02522 18 LASLRRLN-PLPLEIIVV-DGGSTDGTVAIARS-AGVVVISSPKGRARQMNAGA---AAARGDWLLFLHADTRLPPDWDA 91 (221)
T ss_pred HHHHHhcc-CCCcEEEEE-eCCCCccHHHHHhc-CCeEEEeCCcCHHHHHHHHH---HhccCCEEEEEcCCCCCChhHHH
Confidence 34444432 256777666 56665432221101 22333344444422111111 12458999999999999998888
Q ss_pred HHHHHHHHhCCcccccccCC
Q 021149 113 RYLSIVKDEGLEISQPALDP 132 (316)
Q Consensus 113 ry~~Ivr~~gLeISQPALd~ 132 (316)
+++..+...+..++.+....
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~ 111 (221)
T cd02522 92 AIIETLRADGAVAGAFRLRF 111 (221)
T ss_pred HHHHHhhcCCcEEEEEEeee
Confidence 88777777776666655443
No 38
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=36.01 E-value=28 Score=29.21 Aligned_cols=47 Identities=21% Similarity=0.118 Sum_probs=31.6
Q ss_pred ccchHHHHHHhhhccCCCcccchhhhhhhhhhcCCCCCcEEEEeeceEEecc
Q 021149 182 VFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLG 233 (316)
Q Consensus 182 VFSR~Awrcvw~miqndlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~ 233 (316)
+|+|++++.+-.+ ... ..|+-|+.+..++.. ..++.+++...+.|+.
T Consensus 158 ~~r~~~~~~~~~~--~~~-~~~~~D~~~~~~~~~--~~~~~~~~~~~~~~r~ 204 (214)
T cd04196 158 AFNRELLELALPF--PDA-DVIMHDWWLALLASA--FGKVVFLDEPLILYRQ 204 (214)
T ss_pred eEEHHHHHhhccc--ccc-ccccchHHHHHHHHH--cCceEEcchhHHHHhc
Confidence 6999999887422 221 267778776666542 4579999888776665
No 39
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=35.43 E-value=34 Score=30.27 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=29.7
Q ss_pred ccccEEEEeccccccCCCChHHHHHHHHHh--CCcccccc
Q 021149 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKDE--GLEISQPA 129 (316)
Q Consensus 92 ~~YdYIflwDDDL~vd~f~i~ry~~Ivr~~--gLeISQPA 129 (316)
+.+|||++.|.|..++.-.+.+.++.+.+. ++-+.|+-
T Consensus 83 a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~ 122 (241)
T cd06427 83 ARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAP 122 (241)
T ss_pred cCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCc
Confidence 678999999999999998888888877643 44444543
No 40
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=34.14 E-value=1.4e+02 Score=29.42 Aligned_cols=102 Identities=18% Similarity=0.270 Sum_probs=63.8
Q ss_pred cEEEEEecccchhhHHHHhh--cCCCCCcEEEEEEecCccCcccc---ccc-------cCceeEEEeeccc---hhhh--
Q 021149 19 NLLAIAAGIKQKKIVDQIVR--KFPSKDFVVMLFHYDGVVDEWKD---LVW-------ADRAIHVSAANQT---KWWF-- 81 (316)
Q Consensus 19 ~Lva~~vG~kqk~~vd~~v~--kf~~~nF~v~LfhYDg~v~~w~d---~ew-------s~~aiHv~a~kqt---KWw~-- 81 (316)
.|.+++||..-...+..+.+ .+....+.+.+|.-| ...+|.. =+| ....+|-.....+ .|-.
T Consensus 2 ~~~vv~~g~~~~~~~~~lkSil~~n~~~l~Fhi~~d~-~~~~~~~~~l~~~~~~~~~~i~~~i~~I~~P~~~~~~ws~l~ 80 (304)
T cd06430 2 HLAVVACGERLEETLTMLKSAIVFSQKPLRFHIFAED-QLKQSFKEKLDDWPELIDRKFNYTLHPITFPSGNAAEWKKLF 80 (304)
T ss_pred EEEEEEcCCcHHHHHHHHHHHHHhCCCCEEEEEEECC-ccCHHHHHHHHHHHHhccceeeeEEEEEecCccchhhhhhcc
Confidence 47888999984333222222 223457888888844 3333332 122 2233444333222 3432
Q ss_pred ----hhhccCccccccccEEEEeccccccCCCChHHHHHHHHHhC
Q 021149 82 ----AKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEG 122 (316)
Q Consensus 82 ----akRfLhPdiv~~YdYIflwDDDL~vd~f~i~ry~~Ivr~~g 122 (316)
..|++=|+++.++|-|.-.|-|+-+ .-++..++++.+.++
T Consensus 81 ~~~~y~RL~ip~lLp~~dkvLYLD~Dii~-~~dI~eL~~~~~df~ 124 (304)
T cd06430 81 KPCAAQRLFLPSLLPDVDSLLYVDTDILF-LRPVEEIWSFLKKFN 124 (304)
T ss_pred cHHHHHHHHHHHHhhhhceEEEeccceee-cCCHHHHHHHHhhcC
Confidence 3578889999999999999999988 568999999866554
No 41
>PF09828 Chrome_Resist: Chromate resistance exported protein; InterPro: IPR018634 Members of this family of bacterial proteins are involved in the reduction of chromate accumulation and are essential for chromate resistance [, ].
Probab=33.79 E-value=33 Score=30.38 Aligned_cols=55 Identities=20% Similarity=0.505 Sum_probs=36.8
Q ss_pred hhhhhhccCccccccccEEEEeccc-------cccCCCChH-----------HHHHHHHHhCCcccccccCCCCCceecc
Q 021149 79 WWFAKRFLHPDIVAEYNYIFLWDED-------IGVENFNPR-----------RYLSIVKDEGLEISQPALDPVKSEVHHP 140 (316)
Q Consensus 79 Ww~akRfLhPdiv~~YdYIflwDDD-------L~vd~f~i~-----------ry~~Ivr~~gLeISQPALd~~s~~ish~ 140 (316)
=|+++||+-|+ =+++|++++. .+-..||+. .|=-++++||| ..|||..= +.|-|.
T Consensus 15 ~WLIrRFIDp~----A~F~fv~~~~v~~~~~~~~A~pFD~~ga~~tH~g~~cTFe~ll~~f~L--~dpaL~~l-a~IV~~ 87 (135)
T PF09828_consen 15 PWLIRRFIDPE----AEFLFVPPPEVLDVACPFDAIPFDIPGAEFTHRGDRCTFEVLLASFGL--DDPALARL-AAIVRG 87 (135)
T ss_pred HHHHHHhcCCC----ceEEEeCchhhccccccCCCCcccCCCCeeeeeCCcccHHHHHHHhCC--CCHHHHHH-HHHHHH
Confidence 48999999885 3677887766 122234332 46678899999 89999763 234343
No 42
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=33.33 E-value=40 Score=32.95 Aligned_cols=33 Identities=30% Similarity=0.467 Sum_probs=29.8
Q ss_pred ccEEEEeccccccCCCChHHHHHHHHHhCCccc
Q 021149 94 YNYIFLWDEDIGVENFNPRRYLSIVKDEGLEIS 126 (316)
Q Consensus 94 YdYIflwDDDL~vd~f~i~ry~~Ivr~~gLeIS 126 (316)
+|||++.|.|..++...+.++++.+++.+..+.
T Consensus 134 gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~v 166 (384)
T TIGR03469 134 ADYLLLTDADIAHGPDNLARLVARARAEGLDLV 166 (384)
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHHhCCCCEE
Confidence 999999999999999999999999988776654
No 43
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=32.33 E-value=22 Score=27.65 Aligned_cols=25 Identities=28% Similarity=0.668 Sum_probs=19.1
Q ss_pred ccccccccEEEEeccccccCCCChHHHHHHHHHhC
Q 021149 88 PDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEG 122 (316)
Q Consensus 88 Pdiv~~YdYIflwDDDL~vd~f~i~ry~~Ivr~~g 122 (316)
..+...|||||++|.+ +++-.|+.|
T Consensus 13 ~~i~~~~~~iFt~D~~----------~~~~~~~~G 37 (79)
T PF12996_consen 13 YSIANSYDYIFTFDRS----------FVEEYRNLG 37 (79)
T ss_pred hhhCCCCCEEEEECHH----------HHHHHHHcC
Confidence 4788899999999975 455566666
No 44
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=30.56 E-value=34 Score=28.17 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=20.4
Q ss_pred ccccEEEEeccccccCCCChHHHHHHH
Q 021149 92 AEYNYIFLWDEDIGVENFNPRRYLSIV 118 (316)
Q Consensus 92 ~~YdYIflwDDDL~vd~f~i~ry~~Iv 118 (316)
+.+|||++.|+|..++..-+.+.++.+
T Consensus 78 a~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred hcCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 578999999999988765555555543
No 45
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=29.84 E-value=92 Score=29.27 Aligned_cols=95 Identities=12% Similarity=0.209 Sum_probs=51.5
Q ss_pred cccchhhHHHHhhcCCC-CCcEEEEEEecCccCccccccccCceeEEEeeccchhhhhhhccCccccccccEEEEecccc
Q 021149 26 GIKQKKIVDQIVRKFPS-KDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDI 104 (316)
Q Consensus 26 G~kqk~~vd~~v~kf~~-~nF~v~LfhYDg~v~~w~d~ews~~aiHv~a~kqtKWw~akRfLhPdiv~~YdYIflwDDDL 104 (316)
..+-.....++|+.... ..-.=+++...+...--....|....+-|....+++=-.-.||+..+. -.=|.||..|||+
T Consensus 8 ~~~R~~~L~~~l~~l~~~~~l~~IvVvWn~~~~~P~~~~~~~~~vpV~~~~~~~nsLnnRF~p~~~-i~T~AVl~~DDDv 86 (247)
T PF09258_consen 8 SYKRSDLLKRLLRHLASSPSLRKIVVVWNNPNPPPPSSKWPSTGVPVRVVRSSRNSLNNRFLPDPE-IETDAVLSLDDDV 86 (247)
T ss_dssp -SS-HHHHHHHHHHHTTSTTEEEEEEEEE-TS--THHHHHT---S-EEEEEESSHHGGGGGS--TT---SSEEEEEETTE
T ss_pred cccchHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcccccCCCCceEEEEecCCccHHhcCcCccc-cCcceEEEecCCc
Confidence 45555566666665432 223323333333222222355655556565566666556677765333 3579999999999
Q ss_pred ccCCCChHHHHHHHHHh
Q 021149 105 GVENFNPRRYLSIVKDE 121 (316)
Q Consensus 105 ~vd~f~i~ry~~Ivr~~ 121 (316)
.++..+++.=|+.-+++
T Consensus 87 ~~~~~~l~faF~~W~~~ 103 (247)
T PF09258_consen 87 MLSCDELEFAFQVWREF 103 (247)
T ss_dssp EE-HHHHHHHHHHHCCS
T ss_pred ccCHHHHHHHHHHHHhC
Confidence 99999999989888854
No 46
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=27.17 E-value=83 Score=34.42 Aligned_cols=97 Identities=21% Similarity=0.302 Sum_probs=69.8
Q ss_pred ecccchhhHHHHhhcCCCCCcEEEEEEecCc-------------------c-------CccccccccCceeEEEeeccch
Q 021149 25 AGIKQKKIVDQIVRKFPSKDFVVMLFHYDGV-------------------V-------DEWKDLVWADRAIHVSAANQTK 78 (316)
Q Consensus 25 vG~kqk~~vd~~v~kf~~~nF~v~LfhYDg~-------------------v-------~~w~d~ews~~aiHv~a~kqtK 78 (316)
+|..-|+.-.++=-..+.++|+||++-|.-. | +--+|+-|-+-.+-|....-.|
T Consensus 631 ~gGsGkEF~~aLGGN~pREQFTvVmLTYERe~VLm~sLeRL~gLPYLnKvvVVWNspk~P~ddl~WPdigvPv~viR~~~ 710 (907)
T KOG2264|consen 631 AGGSGKEFSKALGGNRPREQFTVVMLTYEREAVLMGSLERLHGLPYLNKVVVVWNSPKDPPDDLTWPDIGVPVEVIRVAE 710 (907)
T ss_pred CCCchHHHHHHhcCCCccceEEEEEEEehHHHHHHHHHHHhhCCcccceEEEEeCCCCCChhcccCcCCCCceEEEEccc
Confidence 4556666666666667789999999988532 2 2235788877777776666666
Q ss_pred hhhhhhccCccccccccEEEEeccccccCCCChHHHHHHHHHhC
Q 021149 79 WWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEG 122 (316)
Q Consensus 79 Ww~akRfLhPdiv~~YdYIflwDDDL~vd~f~i~ry~~Ivr~~g 122 (316)
=-.-+|||-+|.++ -+.|.=.|||..+-|..|-==|..-|+..
T Consensus 711 NsLNNRFlPwd~IE-TEAvLS~DDDahLrhdEI~fgFRVWRE~R 753 (907)
T KOG2264|consen 711 NSLNNRFLPWDRIE-TEAVLSLDDDAHLRHDEIIFGFRVWRENR 753 (907)
T ss_pred ccccccccCchhhh-heeeeecccchhhhhhheeeeeehhhhcc
Confidence 66778999988874 58999999999998887765555555543
No 47
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=26.74 E-value=1.5e+02 Score=33.23 Aligned_cols=109 Identities=15% Similarity=0.185 Sum_probs=66.4
Q ss_pred CCCcEEEEEecccchhhHHHHhh-----cCCCCCcEEEEEEecCccCccccccccCceeEEEeec---cchhhhhhhccC
Q 021149 16 PPMNLLAIAAGIKQKKIVDQIVR-----KFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAAN---QTKWWFAKRFLH 87 (316)
Q Consensus 16 ~~k~Lva~~vG~kqk~~vd~~v~-----kf~~~nF~v~LfhYDg~v~~w~d~ews~~aiHv~a~k---qtKWw~akRfLh 87 (316)
.++.=|.+|+=....+.+.+.+. .++.++|.|++.. ||+.|+..++-= +-.+++..+. +.|=--++..+.
T Consensus 259 ~P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVD-DgS~D~t~~la~-~~~v~yI~R~~n~~gKAGnLN~aL~ 336 (852)
T PRK11498 259 WPTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILD-DGGREEFRQFAQ-EVGVKYIARPTHEHAKAGNINNALK 336 (852)
T ss_pred CCcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEe-CCCChHHHHHHH-HCCcEEEEeCCCCcchHHHHHHHHH
Confidence 45677788874443344433332 5666789999885 898888765421 1234544432 222111122221
Q ss_pred ccccccccEEEEeccccccCCCChHHHHHHH-HHhCCcccccc
Q 021149 88 PDIVAEYNYIFLWDEDIGVENFNPRRYLSIV-KDEGLEISQPA 129 (316)
Q Consensus 88 Pdiv~~YdYIflwDDDL~vd~f~i~ry~~Iv-r~~gLeISQPA 129 (316)
.+.+|||.+.|-|-.++...+.+.+..+ +.-.+.+.|..
T Consensus 337 ---~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp 376 (852)
T PRK11498 337 ---YAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTP 376 (852)
T ss_pred ---hCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcc
Confidence 2579999999999998877777777654 45567777753
No 48
>TIGR02165 cas_GSU0054 CRISPR-associated protein, GSU0054 family. This model represents a rare CRISPR-associated protein. So far, members are found in Geobacter sulfurreducens and in two unpublished genomes: Gemmata obscuriglobus and Actinomyces naeslundii.CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.
Probab=25.52 E-value=11 Score=38.20 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=16.5
Q ss_pred hhccCCCcccchhhhhhhh
Q 021149 193 YMIQNDLIHAWGLDIQLGY 211 (316)
Q Consensus 193 ~miqndlvhGWGLD~~w~~ 211 (316)
.|-||=..-|||+|++.|.
T Consensus 89 ~~A~~i~hLGWGiDmv~G~ 107 (465)
T TIGR02165 89 EAAQNINHLGWGIDMVAGD 107 (465)
T ss_pred HHHhhccccccchhhcccc
Confidence 6789999999999999864
No 49
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=25.30 E-value=93 Score=28.00 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=25.8
Q ss_pred cccccEEEEeccccccCCCChHHHHHHHHH
Q 021149 91 VAEYNYIFLWDEDIGVENFNPRRYLSIVKD 120 (316)
Q Consensus 91 v~~YdYIflwDDDL~vd~f~i~ry~~Ivr~ 120 (316)
.+.+|||++.|.|..++.--+.++++.+.+
T Consensus 71 ~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~ 100 (244)
T cd04190 71 PDDPEFILLVDADTKFDPDSIVQLYKAMDK 100 (244)
T ss_pred cCCCCEEEEECCCCcCCHhHHHHHHHHHHh
Confidence 578999999999999988888888877743
No 50
>KOG1555 consensus 26S proteasome regulatory complex, subunit RPN11 [Posttranslational modification, protein turnover, chaperones]
Probab=25.10 E-value=37 Score=33.86 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=32.2
Q ss_pred CCCCCCCCCccceEEEeccccchHHHHHHhhhccCCCcccc
Q 021149 163 CDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAW 203 (316)
Q Consensus 163 C~~~~~~ppcTgFVEiMaPVFSR~Awrcvw~miqndlvhGW 203 (316)
|+-+..+.-.|.|||-+-|||++.+..-+---.+-.++-||
T Consensus 80 ~am~~sg~~is~~~e~~d~V~q~q~~~~l~~tGrp~~VVGW 120 (316)
T KOG1555|consen 80 FAMPQSGTGISKFVEAVDPVFQTQMMDLLKQTGRPELVVGW 120 (316)
T ss_pred eccccccceecccchhccHHHHHHHHHHHHhcCCcceEEee
Confidence 44445566688899999999999999887755666778888
No 51
>PLN02867 Probable galacturonosyltransferase
Probab=24.53 E-value=32 Score=36.54 Aligned_cols=34 Identities=21% Similarity=0.439 Sum_probs=30.1
Q ss_pred hhccCccccccccEEEEeccccccCCCChHHHHHH
Q 021149 83 KRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSI 117 (316)
Q Consensus 83 kRfLhPdiv~~YdYIflwDDDL~vd~f~i~ry~~I 117 (316)
.||+=||++.++|-|...|+|+-|.. |+..++++
T Consensus 334 lRflIPeLLP~LdKVLYLD~DVVVqg-DLseLwdi 367 (535)
T PLN02867 334 LRIYIPELFPDLNKIVFLDDDVVVQH-DLSSLWEL 367 (535)
T ss_pred HHHHHHHHhhccCeEEEecCCEEEcC-chHHHHhC
Confidence 46777999999999999999999987 88888876
No 52
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=24.39 E-value=3.1e+02 Score=26.98 Aligned_cols=93 Identities=18% Similarity=0.312 Sum_probs=56.4
Q ss_pred CcEEEEEecccchhhHHHHhh---cCCCCCcEEEEEEecCccCcccccccc----CceeEEEeeccchhh-h--hhhc--
Q 021149 18 MNLLAIAAGIKQKKIVDQIVR---KFPSKDFVVMLFHYDGVVDEWKDLVWA----DRAIHVSAANQTKWW-F--AKRF-- 85 (316)
Q Consensus 18 k~Lva~~vG~kqk~~vd~~v~---kf~~~nF~v~LfhYDg~v~~w~d~ews----~~aiHv~a~kqtKWw-~--akRf-- 85 (316)
--|+.+++|.=.. ..+..++ |+...++.+.-+-+=. .-..++.- .+-+.|...++.+.| . +.||
T Consensus 36 Igl~vfatGkY~~-f~~~F~~SAEk~Fm~g~~v~YyVFTD---~~~~~p~v~lg~~r~~~V~~v~~~~~W~~~sl~Rm~~ 111 (271)
T cd02515 36 IGLTVFAVGKYTE-FLERFLESAEKHFMVGYRVIYYIFTD---KPAAVPEVELGPGRRLTVLKIAEESRWQDISMRRMKT 111 (271)
T ss_pred EEEEEEEeccHHH-HHHHHHHHHHHhccCCCeeEEEEEeC---CcccCcccccCCCceeEEEEeccccCCcHHHHHHHHH
Confidence 3688999997443 3333332 4456888887776633 33334432 245666666666766 2 3443
Q ss_pred -c-C--ccccccccEEEEecccccc-CCCChHHH
Q 021149 86 -L-H--PDIVAEYNYIFLWDEDIGV-ENFNPRRY 114 (316)
Q Consensus 86 -L-h--Pdiv~~YdYIflwDDDL~v-d~f~i~ry 114 (316)
+ | -.+..++||+|..|=|... +++..+-+
T Consensus 112 ~~~~~~~~~~~e~DYlF~~dvd~~F~~~ig~E~L 145 (271)
T cd02515 112 LADHIADRIGHEVDYLFCMDVDMVFQGPFGVETL 145 (271)
T ss_pred HHHHHHHhhcccCCEEEEeeCCceEeecCCHHHh
Confidence 2 2 3467899999999977654 45555554
No 53
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=23.55 E-value=78 Score=26.69 Aligned_cols=29 Identities=10% Similarity=0.066 Sum_probs=25.3
Q ss_pred ccccEEEEeccccccCCCChHHHHHHHHH
Q 021149 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKD 120 (316)
Q Consensus 92 ~~YdYIflwDDDL~vd~f~i~ry~~Ivr~ 120 (316)
+.||||++.|.|..++...+.++.+.+.+
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELNARFAA 108 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHHHHHhh
Confidence 46999999999999998888888887754
No 54
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=22.53 E-value=57 Score=30.47 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=30.4
Q ss_pred ccccEEEEeccccccCCCChHHHHHHHH-HhCCcccc
Q 021149 92 AEYNYIFLWDEDIGVENFNPRRYLSIVK-DEGLEISQ 127 (316)
Q Consensus 92 ~~YdYIflwDDDL~vd~f~i~ry~~Ivr-~~gLeISQ 127 (316)
+.||||.+.|-|..++...+.+.+..+. .-++-+.|
T Consensus 94 ~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq 130 (254)
T cd04191 94 SRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQ 130 (254)
T ss_pred CCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 6899999999999999999999998885 44555555
No 55
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=22.41 E-value=1.4e+02 Score=30.96 Aligned_cols=114 Identities=14% Similarity=0.107 Sum_probs=64.0
Q ss_pred cccccEEEEeccccccCCCChHHHHHHHHH---hCCcccccccCCCCCceeccccccc-cCcccceeeeeccCCCCCCCC
Q 021149 91 VAEYNYIFLWDEDIGVENFNPRRYLSIVKD---EGLEISQPALDPVKSEVHHPITARR-RNSKAHRRMYKYKGSGRCDDY 166 (316)
Q Consensus 91 v~~YdYIflwDDDL~vd~f~i~ry~~Ivr~---~gLeISQPALd~~s~~ish~iT~r~-~~~~vHr~~~~~~~~~~C~~~ 166 (316)
.+.||||++.|+||.+-..++-.+-.-|.+ .+|-=--|-.--..| -.+|+-. .-...|-|.|-
T Consensus 168 ~a~ydlvlisDsgI~m~pdtildm~t~M~shekmalvtq~py~~dr~G---f~atle~~~fgTsh~r~yl---------- 234 (431)
T KOG2547|consen 168 AAKYDLVLISDSGIFMKPDTILDMATTMMSHEKMALVTQTPYCKDRQG---FDATLEQVYFGTSHPRIYL---------- 234 (431)
T ss_pred HhcCCEEEEecCCeeecCchHHHHHHhhhcccceeeecCCceeecccc---chhhhhheeeccCCceEEE----------
Confidence 478999999999999999999888877763 333222222111111 1122221 11223444431
Q ss_pred CCCCCccceEE--EeccccchHHHHHHhhhccCCCcccchh--hhhhhhhhcCCCCCcEEEE
Q 021149 167 STAPPCIGWVE--MMAPVFSRAAWRCAWYMIQNDLIHAWGL--DIQLGYCAQGDRTKNVGVV 224 (316)
Q Consensus 167 ~~~ppcTgFVE--iMaPVFSR~Awrcvw~miqndlvhGWGL--D~~w~~c~~g~~~~kiGVV 224 (316)
.-+|++|+= .|--...++|+...=.+. ..||=| |+-..+|.- .|+-|.+++
T Consensus 235 --~~n~~~~~c~tgms~~mrK~~ld~~ggi~----~f~~yLaedyFaaksll-SRG~ksais 289 (431)
T KOG2547|consen 235 --SGNVLGFNCSTGMSSMMRKEALDECGGIS----AFGGYLAEDYFAAKSLL-SRGWKSAIS 289 (431)
T ss_pred --ccccccccccccHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHHHHH-hhhhhhhhc
Confidence 224777765 577777788885332221 133333 777788875 466666553
No 56
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=21.72 E-value=54 Score=31.30 Aligned_cols=39 Identities=31% Similarity=0.535 Sum_probs=28.1
Q ss_pred chhhhhhhccC-ccccccccEEEEeccccccCC--CChHHHH
Q 021149 77 TKWWFAKRFLH-PDIVAEYNYIFLWDEDIGVEN--FNPRRYL 115 (316)
Q Consensus 77 tKWw~akRfLh-Pdiv~~YdYIflwDDDL~vd~--f~i~ry~ 115 (316)
.|=+|.+|.-. -.++..||+|++.|=|++|=| --|+.|+
T Consensus 24 ~kd~fFrRHCvva~~L~~~~~vlflDaDigVvNp~~~iEefi 65 (222)
T PF03314_consen 24 QKDKFFRRHCVVAKILPEYDWVLFLDADIGVVNPNRRIEEFI 65 (222)
T ss_pred chhHHHHHHHHHHHHhccCCEEEEEcCCceeecCcccHHHhc
Confidence 36577777422 678889999999999999944 3345555
No 57
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=21.63 E-value=51 Score=29.25 Aligned_cols=11 Identities=45% Similarity=0.751 Sum_probs=9.6
Q ss_pred cEEEEEEecCc
Q 021149 45 FVVMLFHYDGV 55 (316)
Q Consensus 45 F~v~LfhYDg~ 55 (316)
-+-+||||-|.
T Consensus 90 ~~RvLFHYnGh 100 (154)
T PF14538_consen 90 DERVLFHYNGH 100 (154)
T ss_pred CceEEEEECCC
Confidence 49999999984
No 58
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=21.44 E-value=63 Score=26.56 Aligned_cols=35 Identities=11% Similarity=0.185 Sum_probs=27.6
Q ss_pred cEEEEeccccccCCCChHHHHHHHHHhCCcccccc
Q 021149 95 NYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA 129 (316)
Q Consensus 95 dYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPA 129 (316)
|||.+.|+|..++..-++++++.+.+.+..+....
T Consensus 81 d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 81 DIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 99999999999888888888887666666554444
No 59
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=21.28 E-value=65 Score=31.30 Aligned_cols=127 Identities=16% Similarity=0.046 Sum_probs=64.2
Q ss_pred cccccEEEEeccccccCCCChHHHHHHHHHhCCcccccccC--CCCCceeccccccccCcccceeeeeccCCCCCCCCCC
Q 021149 91 VAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALD--PVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYST 168 (316)
Q Consensus 91 v~~YdYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd--~~s~~ish~iT~r~~~~~vHr~~~~~~~~~~C~~~~~ 168 (316)
.+.+|||.+.|.|..++..-+.+....++..+..+.+.... +..+....-.+.. -...+.....-....+.+
T Consensus 124 ~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~----- 197 (373)
T TIGR03472 124 HARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYRGRPVPGFWSRLGAMG-INHNFLPSVMVARALGRA----- 197 (373)
T ss_pred hccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEeccccCCCCCCHHHHHHHHH-hhhhhhHHHHHHHhccCC-----
Confidence 36899999999999998888888887776556555443221 1111000000000 000000000000000000
Q ss_pred CCCccceEEEeccccchHHHHHHhhhccCCCcccchhhhhhhhhhcCCCCCcEEEEeeceEEec
Q 021149 169 APPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHL 232 (316)
Q Consensus 169 ~ppcTgFVEiMaPVFSR~Awrcvw~miqndlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~ 232 (316)
.|+-...=+|+|+++..+=. ++...+.-+=|+.+++-+. ..+.++.+.+.. |.|+
T Consensus 198 -----~~~~G~~~a~RR~~l~~iGG--f~~~~~~~~ED~~l~~~i~-~~G~~v~~~~~~-v~~~ 252 (373)
T TIGR03472 198 -----RFCFGATMALRRATLEAIGG--LAALAHHLADDYWLGELVR-ALGLRVVLAPVV-VDTD 252 (373)
T ss_pred -----ccccChhhheeHHHHHHcCC--hHHhcccchHHHHHHHHHH-HcCCeEEecchh-hhcC
Confidence 11112223689999988732 2333344457888887765 346788877654 4443
No 60
>PRK10073 putative glycosyl transferase; Provisional
Probab=21.05 E-value=85 Score=30.22 Aligned_cols=106 Identities=18% Similarity=0.178 Sum_probs=60.2
Q ss_pred CCCcEEEEEecccchhhH----HHHhhcCCCCCcEEEEEEecCccCcccc-c-cccC--ceeEEEe-eccchhhhhhhcc
Q 021149 16 PPMNLLAIAAGIKQKKIV----DQIVRKFPSKDFVVMLFHYDGVVDEWKD-L-VWAD--RAIHVSA-ANQTKWWFAKRFL 86 (316)
Q Consensus 16 ~~k~Lva~~vG~kqk~~v----d~~v~kf~~~nF~v~LfhYDg~v~~w~d-~-ews~--~aiHv~a-~kqtKWw~akRfL 86 (316)
.++.-|++||=... ..+ +.++.+- ..+|.|++.. ||+.|+=.+ + +|.+ ..+++.. .++..= .+ |.
T Consensus 5 ~p~vSVIIP~yN~~-~~L~~~l~Sl~~Qt-~~~~EIIiVd-DgStD~t~~i~~~~~~~~~~i~vi~~~n~G~~-~a-rN- 78 (328)
T PRK10073 5 TPKLSIIIPLYNAG-KDFRAFMESLIAQT-WTALEIIIVN-DGSTDNSVEIAKHYAENYPHVRLLHQANAGVS-VA-RN- 78 (328)
T ss_pred CCeEEEEEeccCCH-HHHHHHHHHHHhCC-CCCeEEEEEe-CCCCccHHHHHHHHHhhCCCEEEEECCCCChH-HH-HH-
Confidence 34567788874433 344 4444332 2578877775 888764211 1 1211 1233321 222210 01 10
Q ss_pred CccccccccEEEEeccccccCCCChHHHHHHHHHhCCcccc
Q 021149 87 HPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQ 127 (316)
Q Consensus 87 hPdiv~~YdYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQ 127 (316)
..=-.+.-|||++.|.|-.++...++++++.+++.++++..
T Consensus 79 ~gl~~a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~ 119 (328)
T PRK10073 79 TGLAVATGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ 119 (328)
T ss_pred HHHHhCCCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence 01112567999999999889888888999988888877754
No 61
>PRK11204 N-glycosyltransferase; Provisional
Probab=20.40 E-value=82 Score=30.58 Aligned_cols=201 Identities=16% Similarity=0.103 Sum_probs=96.3
Q ss_pred CCCcEEEEEecccchhhHHHHhhcCC---CCCcEEEEEEecCccCcccc-c-cccCc--eeEEEe--eccchhhhhhhcc
Q 021149 16 PPMNLLAIAAGIKQKKIVDQIVRKFP---SKDFVVMLFHYDGVVDEWKD-L-VWADR--AIHVSA--ANQTKWWFAKRFL 86 (316)
Q Consensus 16 ~~k~Lva~~vG~kqk~~vd~~v~kf~---~~nF~v~LfhYDg~v~~w~d-~-ews~~--aiHv~a--~kqtKWw~akRfL 86 (316)
.++.-|.+|+=... +.+.+.++... -.+++|++.. ||+.|+=.+ + ++..+ -+++.. .+.+|=.-.+.-+
T Consensus 53 ~p~vsViIp~yne~-~~i~~~l~sl~~q~yp~~eiiVvd-D~s~d~t~~~l~~~~~~~~~v~~i~~~~n~Gka~aln~g~ 130 (420)
T PRK11204 53 YPGVSILVPCYNEG-ENVEETISHLLALRYPNYEVIAIN-DGSSDNTGEILDRLAAQIPRLRVIHLAENQGKANALNTGA 130 (420)
T ss_pred CCCEEEEEecCCCH-HHHHHHHHHHHhCCCCCeEEEEEE-CCCCccHHHHHHHHHHhCCcEEEEEcCCCCCHHHHHHHHH
Confidence 45667777775543 44544443321 2368887765 566554222 1 11111 133322 3444422222111
Q ss_pred CccccccccEEEEeccccccCCCChHHHHHHHH-HhCCcccc--cccCCCCCceeccccccccCc-ccceeeeeccCCCC
Q 021149 87 HPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVK-DEGLEISQ--PALDPVKSEVHHPITARRRNS-KAHRRMYKYKGSGR 162 (316)
Q Consensus 87 hPdiv~~YdYIflwDDDL~vd~f~i~ry~~Ivr-~~gLeISQ--PALd~~s~~ish~iT~r~~~~-~vHr~~~~~~~~~~ 162 (316)
-.+.||||++.|.|..++...+.++++.++ ..+..+.| |......+.+.+..+..-... ...++. ....+
T Consensus 131 ---~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~- 204 (420)
T PRK11204 131 ---AAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIRNRSTLLGRIQVGEFSSIIGLIKRA--QRVYG- 204 (420)
T ss_pred ---HHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceeccchhHHHHHHHHHHHHhhhHHHHH--HHHhC-
Confidence 126899999999999999988888888875 33444444 222211110111000000000 000000 00000
Q ss_pred CCCCCCCCCccceEEEeccccchHHHHHHhhhccCCCcccchhhhhhhhhhcCCCCCcEEEEeeceEEeccCCCCC
Q 021149 163 CDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTLG 238 (316)
Q Consensus 163 C~~~~~~ppcTgFVEiMaPVFSR~Awrcvw~miqndlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~~ptlg 238 (316)
....+-.++=+|+|+++..+=.+ ..+.. +=|+.+...+. ..+.++..+....+.|...+|+.
T Consensus 205 ---------~~~~~~G~~~~~rr~~l~~vgg~-~~~~~---~ED~~l~~rl~-~~G~~i~~~p~~~~~~~~p~t~~ 266 (420)
T PRK11204 205 ---------RVFTVSGVITAFRKSALHEVGYW-STDMI---TEDIDISWKLQ-LRGWDIRYEPRALCWILMPETLK 266 (420)
T ss_pred ---------CceEecceeeeeeHHHHHHhCCC-CCCcc---cchHHHHHHHH-HcCCeEEeccccEEEeECcccHH
Confidence 00122234457899999887211 11221 34666654443 23568888887777776655544
Done!