BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021150
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 122/286 (42%), Gaps = 15/286 (5%)
Query: 33 PLDVIKTRLQVHGLPK---LTNGTVKGSLIVGSLEQIFQKEGLRGMYRGLSPTVLALLPN 89
PLD K RLQ+ G + T + + ++G++ + + EG R +Y GL + +
Sbjct: 21 PLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSF 80
Query: 90 WAVYFTMYEQLKSFLCSEDKNHHLSXXXXXXXXXXXXXXXXXXXXPLWVVKTRLQQTQGM 149
+V +Y+ +K F + H P VVK R Q Q
Sbjct: 81 ASVRIGLYDSVKQFY--TKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQ-AQAR 137
Query: 150 KAGVVPYRSTLSALSRIAQEEGIRGLYSGLVPALAGISHV-AIQFPTYEKIKMHLADQGN 208
G Y+ST+ A IA+EEGIRGL+ G P +A + V + TY+ IK L + N
Sbjct: 138 AGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLL-KAN 196
Query: 209 TSMDKLXXXXXXXXXXXXKIFAST-LTYPHEVVRSRLQEQGHHSEKRYSGVVDCIKKVFQ 267
D L F +T + P +VV++R + + +Y C + +
Sbjct: 197 LMTDDLPCHFTSAFGAG---FCTTVIASPVDVVKTRYM---NSALGQYHSAGHCALTMLR 250
Query: 268 QEGLPGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVSYFPPDPQP 313
+EG FY+G + LR V+ F ++E + R L++ + P
Sbjct: 251 KEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSREAP 296
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 230 ASTLTYPHEVVRSRLQEQGHH-------SEKRYSGVVDCIKKVFQQEGLPGFYRGCATNL 282
A +T+P + + RLQ QG + +Y GV+ I + + EG Y G L
Sbjct: 15 ADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGL 74
Query: 283 LRTTPAAVITFTSFEMIHRF 302
R A + ++ + +F
Sbjct: 75 QRQMSFASVRIGLYDSVKQF 94
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 118/281 (41%), Gaps = 12/281 (4%)
Query: 29 TFVCPLDVIKTRLQVHGLPKLTNGTVKGSLIVGSLEQIFQKEGLRGMYRGLSPTVLALLP 88
T V P++ +K LQV K + + I+ + +I +++G +RG V+ P
Sbjct: 23 TAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFP 82
Query: 89 NWAVYFTMYEQLKS-FLCSEDKNHHLSXXXXXXXXXXXXXXXXXX--XXPLWVVKTRLQQ 145
A+ F ++ K FL D++ PL +TRL
Sbjct: 83 TQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAA 142
Query: 146 TQGMKAGVVPYRSTLSALSRIAQEEGIRGLYSGLVPALAGIS-HVAIQFPTYEKIKMHLA 204
G A + + +++I + +G+RGLY G ++ GI + A F Y+ K L
Sbjct: 143 DVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLP 202
Query: 205 DQGNTSMDKLXXXXXXXXXXXXKIFASTLTYPHEVVRSRLQEQGHH--SEKRYSGVVDCI 262
D N + A ++YP + VR R+ Q ++ Y+G VDC
Sbjct: 203 DPKNVHI-----IVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCW 257
Query: 263 KKVFQQEGLPGFYRGCATNLLRTTPAAVITFTSFEMIHRFL 303
+K+ + EG F++G +N+LR A + ++ I +F+
Sbjct: 258 RKIAKDEGPKAFFKGAWSNVLRGMGGAFV-LVLYDEIKKFV 297
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 230 ASTLTYPHEVVRSRLQEQGHHS-----EKRYSGVVDCIKKVFQQEGLPGFYRGCATNLLR 284
+ T P E V+ LQ Q H S EK+Y G++DC+ ++ +++G F+RG N++R
Sbjct: 21 SKTAVAPIERVKLLLQVQ-HASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIR 79
Query: 285 TTPAAVITFT 294
P + F
Sbjct: 80 YFPTQALNFA 89
>pdb|3IWF|A Chain A, The Crystal Structure Of The N-Terminal Domain Of A Rpir
Transcriptional Regulator From Staphylococcus
Epidermidis To 1.4a
pdb|3IWF|B Chain B, The Crystal Structure Of The N-Terminal Domain Of A Rpir
Transcriptional Regulator From Staphylococcus
Epidermidis To 1.4a
Length = 107
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 227 KIFASTLTYPHEVVRSRLQEQGHHSEKRYSGVVDCIKKVFQQEGLPGFYRGCATNLLRTT 286
KI L YPH+VV QE + E + ++ KKV PG + T L +
Sbjct: 21 KIAQFILNYPHKVVNXTSQEIANQLETSSTSIIRLSKKV-----TPGGFNELKTRLSKFL 75
Query: 287 PAAVITFT 294
P V +
Sbjct: 76 PKEVTQYN 83
>pdb|2F3O|A Chain A, Crystal Structure Of A Glycyl Radical Enzyme From
Archaeoglobus Fulgidus
pdb|2F3O|B Chain B, Crystal Structure Of A Glycyl Radical Enzyme From
Archaeoglobus Fulgidus
Length = 776
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 144 QQTQGMKAGVVPY--RSTLSALSRIAQEEGIRGLYSGLVPAL---AGISHVAIQFP 194
+ + ++ + PY R T+ A + + ++ LY+G V L AGISHVA+ +P
Sbjct: 106 EDAKVLREEIAPYWQRKTIEAFAFPLMPDIMQILYTGSVFVLTEIAGISHVAVNYP 161
>pdb|1GL4|A Chain A, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 285
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 45 GLPKLTNGTVKGSLIVGSLE--QIFQKEGLRG---MYRGLSPTVLALLPNWAVY 93
G P+ NG VKG + VGS + +F+ L M G S T ++ +P Y
Sbjct: 47 GSPQRVNGKVKGRIFVGSSQVPVVFENTDLHSYVVMNHGRSYTAISTIPETVGY 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,292,900
Number of Sequences: 62578
Number of extensions: 283915
Number of successful extensions: 507
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 490
Number of HSP's gapped (non-prelim): 9
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)