BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021154
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 167 bits (424), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 161/329 (48%), Gaps = 18/329 (5%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
M ++E VCVTG SG IGSWLV LLER YTV ATV++ ++ ++ HL L A+T L L
Sbjct: 1 MGSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTL 60
Query: 61 FQXXXXXXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVL-TAAKALG 119
++ + GCTGVFH+A+P + +DP+N+++ P ++G + ++ + A A
Sbjct: 61 WKADLADEGSFDEAIKGCTGVFHVATPMDFES-KDPENEVIKPTIEGMLGIMKSCAAAKT 119
Query: 120 VKRXXXXXXX-XXXXXXXKWPADKVKDEDCWTDEEYCRQ----------NETLXXXXXXX 168
V+R + P V DE CW+D E+CR ++TL
Sbjct: 120 VRRLVFTSSAGTVNIQEHQLP---VYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWK 176
Query: 169 XXXXXGLDVVVVNPGTVMGPVIPPTLNASXXXXXXXXQGCTDTYENFFMGS-VHFKDVAL 227
+D + + P V+GP I ++ S G Y G VH D+
Sbjct: 177 YAKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCN 236
Query: 228 AHILVYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKK 287
AHI ++ENP A GR++C D + E YPEY+IP K L +KK
Sbjct: 237 AHIYLFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKK 296
Query: 288 LMDLGLQF-IPMDQIIKDSVESLKAKGFI 315
L DLG +F ++ + +V++ +AKG +
Sbjct: 297 LTDLGFEFKYSLEDMFTGAVDTCRAKGLL 325
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 120 bits (301), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 92/330 (27%), Positives = 148/330 (44%), Gaps = 23/330 (6%)
Query: 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQXXX 65
+ CV GG+G + S LV LLL++ Y V+ TV++ ++++ +HL L+ L++F+
Sbjct: 10 KTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELG-DLKIFRADL 68
Query: 66 XXXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTA-AKALGVKRXX 124
+ GC VFH+A+P EDP+N ++ PA++G VNV+ A +A VKR
Sbjct: 69 TDELSFEAPIAGCDFVFHVATPVHFAS-EDPENDMIKPAIQGVVNVMKACTRAKSVKRVI 127
Query: 125 XXXXXXXXXXXXKWPADKVKDEDCWTDEEYCRQ----------NETLXXXXXXXXXXXXG 174
V DE WTD E+ ++TL
Sbjct: 128 LTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEENN 187
Query: 175 LDVVVVNPGTVMGPVIPPTLNASXXXXXXXXQGCTDTYE-----NFFMGSV---HFKDVA 226
+D++ V P + G + + +S G GSV H +DV
Sbjct: 188 IDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVEDVC 247
Query: 227 LAHILVYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAK 286
AHI V E SA GR++C A + + +++ YP+Y +P D P + ++
Sbjct: 248 RAHIFVAEKESASGRYICCAANTSVPELAKFLSKRYPQYKVPTDFGDFPPK-SKLIISSE 306
Query: 287 KLMDLGLQF-IPMDQIIKDSVESLKAKGFI 315
KL+ G F +++I +SVE KAKG +
Sbjct: 307 KLVKEGFSFKYGIEEIYDESVEYFKAKGLL 336
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 140/323 (43%), Gaps = 19/323 (5%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVK-NLSDERETAHLKALEGADTRLRLFQXXXX 66
VCVTGG+G +GSW++ LLE Y+V+ T++ + +R+ + L L GA +L F
Sbjct: 4 VCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLS 63
Query: 67 XXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTA-AKALGVKRXXX 125
+ GC G+FH ASP I V +P+ + V G + +L A + VKR
Sbjct: 64 NPDSFAAAIEGCVGIFHTASP-IDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIY 122
Query: 126 XXXXXXXXXXXKWPADK-VKDEDCWTDEEYCRQ----------NETLXXXXXXXXXXXXG 174
K DK V DE W+D + R ++TL G
Sbjct: 123 TSSGSAVSFNGK---DKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNG 179
Query: 175 LDVVVVNPGTVMGPVIPPTLNASXXXXXXXXQGCTDTYENFFMGSVHFKDVALAHILVYE 234
+DVV + ++G + P L S G + VH DVA AHI + E
Sbjct: 180 IDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYLLE 239
Query: 235 NPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKD-GAKKLMDLGL 293
N GR+ C I + ++ YPEY I + + + R D KKL+D G
Sbjct: 240 NSVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIKGARLPDLNTKKLVDAGF 299
Query: 294 QF-IPMDQIIKDSVESLKAKGFI 315
F ++ + D+++ K KG++
Sbjct: 300 DFKYTIEDMFDDAIQCCKEKGYL 322
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 55/126 (43%), Gaps = 16/126 (12%)
Query: 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVK------NLSDERETAHLKALEGADTR 57
E +V VTG +G + S +V LLE Y V T + NL + + E A
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVE 69
Query: 58 LRLFQXXXXXXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKA 117
L Q + G GV H+AS V + ++++ PA+ GT+N L AA A
Sbjct: 70 DXLKQ------GAYDEVIKGAAGVAHIAS---VVSFSNKYDEVVTPAIGGTLNALRAAAA 120
Query: 118 L-GVKR 122
VKR
Sbjct: 121 TPSVKR 126
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 55/126 (43%), Gaps = 16/126 (12%)
Query: 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVK------NLSDERETAHLKALEGADTR 57
E +V VTG +G + S +V LLE Y V T + NL + + E A
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVE 69
Query: 58 LRLFQXXXXXXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKA 117
L Q + G GV H+AS V + ++++ PA+ GT+N L AA A
Sbjct: 70 DMLKQ------GAYDEVIKGAAGVAHIAS---VVSFSNKYDEVVTPAIGGTLNALRAAAA 120
Query: 118 L-GVKR 122
VKR
Sbjct: 121 TPSVKR 126
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 19/121 (15%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERE----TAHLKALEGADTRLRLFQX 63
+ +TGG+GC+GS L+ L + + + + +RE A L +EG+ T L +
Sbjct: 23 ILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLER 82
Query: 64 XXXXXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPA--VKGTVNVLTAAKALGVK 121
T V H A+ +DP + + A V+G++NV AA GVK
Sbjct: 83 AFDSFKP--------THVVHSAA-----AYKDPDDWAEDAATNVQGSINVAKAASKAGVK 129
Query: 122 R 122
R
Sbjct: 130 R 130
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 2/110 (1%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHA-TVKNLSDERETAHLKALEGADTRLRLFQXXXX 66
+ VTGG G IGS + +LE+ + L A+LK LE D R +
Sbjct: 6 LLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLED-DPRYTFVKGDVA 64
Query: 67 XXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAK 116
V GV HLA+ VD+ L+ V GT +L + +
Sbjct: 65 DYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIR 114
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRY-TVHA----TVKNLSDERETAHLKALEGADTRLRLFQ 62
+ VTGG+G IGS V LL Y V A + +L+ A+L ++ AD RLR
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVD-ADPRLRFVH 61
Query: 63 XXXXXXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKR 122
+ G + H A+ VD+ + V+GT +L A GV R
Sbjct: 62 GDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGR 121
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRY-TVHA----TVKNLSDERETAHLKALEGADTRLRLFQ 62
+ VTGG+G IGS V LL Y V A + +L+ A+L ++ AD RLR
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVD-ADPRLRFVH 61
Query: 63 XXXXXXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKR 122
+ G + H A+ VD+ + V+GT +L A GV R
Sbjct: 62 GDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGR 121
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 15/115 (13%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQXXXXX 67
+ VTG +G +G ++ R A + L+D L L+ A Q
Sbjct: 6 LLVTGAAGQLGR-----VMRERLAPMAEILRLAD------LSPLDPAGPNEECVQCDLAD 54
Query: 68 XXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKR 122
V GC G+ HL VE P Q+L + G N+ AA+A G R
Sbjct: 55 ANAVNAMVAGCDGIVHLGG----ISVEKPFEQILQGNIIGLYNLYEAARAHGQPR 105
>pdb|3RFX|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
Length = 267
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 15/115 (13%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQXXXXX 67
+ VTG +G +G ++ R A + L+D L L+ A Q
Sbjct: 6 LLVTGAAGQLGR-----VMRERLAPMAEILRLAD------LSPLDPAGPNEECVQCDLAD 54
Query: 68 XXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKR 122
V GC G+ HL VE P Q+L + G N+ AA+A G R
Sbjct: 55 ANAVNAMVAGCDGIVHLGG----ISVEKPFEQILQGNIIGLYNLYEAARAHGQPR 105
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 3/115 (2%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATV-KNLSDERETAHLKALEGADTRLRLFQXXXX 66
+ VTGG+G IGS V + VH TV L+ A+L+A+ G R+ L
Sbjct: 7 IIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILG--DRVELVVGDIA 64
Query: 67 XXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK 121
+ H A+ D + + ++ GT +L AA+ ++
Sbjct: 65 DAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIR 119
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 49/117 (41%), Gaps = 16/117 (13%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQXXXXX 67
+ VTGG+G IGS LV L+E Y V V NLS R + E L+ +
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEV-VVVDNLSSGRREFVNPSAELHVRDLKDYSWG--- 58
Query: 68 XXXXXXXVTGCTG--VFHLAS-PCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK 121
G G VFH A+ P + +P N V T NVL A+ GV+
Sbjct: 59 --------AGIKGDVVFHFAANPEVRLSTTEPIVH-FNENVVATFNVLEWARQTGVR 106
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS 40
V +TG +G GS+L LLE+ Y VH V+ S
Sbjct: 26 VALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS 59
>pdb|1XA0|A Chain A, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
pdb|1XA0|B Chain B, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
Length = 328
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSD 41
++ E V VTG +G +GS VS L +R YTV A+ ++
Sbjct: 146 LTPERGPVLVTGATGGVGSLAVSXLAKRGYTVEASTGKAAE 186
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 9 CVTGGSGCIGSWLVSLLLERRYTVHATV-KNLSDERETAHLKALEG 53
VTG +G G++L LLLE+ Y VH V + SD R +EG
Sbjct: 18 LVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEG 63
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS 40
++V +TG +G GS+L LLE+ Y VH + S
Sbjct: 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRAS 36
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGAD 55
++ VTGG+G IGS +V L ++ T V NL D + +L L AD
Sbjct: 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIAD 49
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGAD 55
++ VTGG+G IGS +V L ++ T V NL D + +L L AD
Sbjct: 48 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIAD 96
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQXXXX 66
++ VTGG+G IGS +V L E V + NLS E E + RL +
Sbjct: 3 LIVVTGGAGFIGSHVVDKLSESNEIV--VIDNLSSGNE-------EFVNEAARLVK-ADL 52
Query: 67 XXXXXXXXVTGCTGVFHLAS-PCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKR 122
+ G V+H+A+ P + E+P +++ V T +L A + GV R
Sbjct: 53 AADDIKDYLKGAEEVWHIAANPDVRIGAENP-DEIYRNNVLATYRLLEAMRKAGVSR 108
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSD 41
++ +TG +G GS+L LL + Y VH ++ S+
Sbjct: 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSN 64
>pdb|3UN1|A Chain A, Crystal Structure Of An Oxidoreductase From
Sinorhizobium Meliloti 1021
pdb|3UN1|B Chain B, Crystal Structure Of An Oxidoreductase From
Sinorhizobium Meliloti 1021
pdb|3UN1|C Chain C, Crystal Structure Of An Oxidoreductase From
Sinorhizobium Meliloti 1021
pdb|3UN1|D Chain D, Crystal Structure Of An Oxidoreductase From
Sinorhizobium Meliloti 1021
Length = 260
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39
+ +VV +TG S IG+ LV +R Y V AT +++
Sbjct: 26 NQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSI 62
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 45/117 (38%), Gaps = 20/117 (17%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQXXXXX 67
+ VTGG+G IGS LV L+E Y V D +A L + D
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEVVVVDIVQRDTGGSAELHVRDLKDYSWG-------- 54
Query: 68 XXXXXXXVTGCTG--VFHLAS-PCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK 121
G G VFH A+ P + +P N V T NVL A+ GV+
Sbjct: 55 --------AGIKGDVVFHFAANPEVRLSTTEPIVH-FNENVVATFNVLEWARQTGVR 102
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 5 AEVVCVTGGSGCIGSWLVSLLLERRY 30
+++V VTGG+G IGS V L+E Y
Sbjct: 11 SKIVLVTGGAGYIGSHTVVELIENGY 36
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 5 AEVVCVTGGSGCIGSWLVSLLLERRY 30
AE V VTGG+G IGS V LLE Y
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLEAGY 27
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 5 AEVVCVTGGSGCIGSWLVSLLLERRY 30
AE V VTGG+G IGS V LLE Y
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLEAGY 27
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 5 AEVVCVTGGSGCIGSWLVSLLLERRY 30
AE V VTGG+G IGS V LLE Y
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLEAGY 27
>pdb|3ATY|A Chain A, Crystal Structure Of Tcoye
pdb|3ATY|B Chain B, Crystal Structure Of Tcoye
pdb|3ATZ|A Chain A, Crystal Structure Of Tcoye With Phba
pdb|3ATZ|B Chain B, Crystal Structure Of Tcoye With Phba
pdb|3ATZ|C Chain C, Crystal Structure Of Tcoye With Phba
pdb|3ATZ|D Chain D, Crystal Structure Of Tcoye With Phba
Length = 379
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 16/84 (19%)
Query: 229 HILVYENPSACGRHLC--VEAIS----HY----------GDFVAKVAELYPEYDIPRLPK 272
H ++ NP A +HLC +E +S HY GD VA V Y I L
Sbjct: 257 HGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDMVNQQIGDVVAWVRGSYSGVKISNLRY 316
Query: 273 DTQPGLLRTKDGAKKLMDLGLQFI 296
D + + ++G + G +FI
Sbjct: 317 DFEEADQQIREGKVDAVAFGAKFI 340
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-glucose 4- Epimerase Complex With Nad
Length = 311
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS 40
V VTGG+G IGS +V LL R V A + NL+
Sbjct: 3 VLVTGGAGFIGSHIVEDLLARGLEV-AVLDNLA 34
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,131,533
Number of Sequences: 62578
Number of extensions: 283581
Number of successful extensions: 606
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 572
Number of HSP's gapped (non-prelim): 29
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)