BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021156
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AGK|A Chain A, Structure Of S. Cerevisiae His6 Protein
Length = 260
Score = 201 bits (510), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 115/264 (43%), Positives = 163/264 (61%), Gaps = 12/264 (4%)
Query: 54 VRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAI 113
+F CID+H G+VKQIVG TL K+D K TNF S ++ +A LYK+ + G H I
Sbjct: 1 TKFIGCIDLHNGEVKQIVGGTLTSKKEDVPK--TNFVSQHPSSYYAKLYKDRDVQGCHVI 58
Query: 114 MLGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN-NGQMDL 172
LG P + AA EAL P LQVGGGIN N L ++ + A+ VIVTS++F G L
Sbjct: 59 KLG--PNNDDAAREALQESPQFLQVGGGINDTNCLEWL-KWASKVIVTSWLFTKEGHFQL 115
Query: 173 ERLKDLVRVVGKQRLVLDLSCRK-KDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFL 231
+RL+ L + GK R+V+DLSCRK +DG++ + ++WQ +D+ L+ L Y +EFL
Sbjct: 116 KRLERLTELCGKDRIVVDLSCRKTQDGRWIVAMNKWQTLTDLELNADTFRELRKYTNEFL 175
Query: 232 VHGVDVEGKKLGIDDELVALLGK----YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTV 287
+H DVEG GID+ LV+ L + Y + + YAGG ++ DL+ + G+VD+T
Sbjct: 176 IHAADVEGLCGGIDELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTF 235
Query: 288 GSALDIFGGNLA-YKDVVAWHAQQ 310
GS+LDIFGGNL ++D W+ +Q
Sbjct: 236 GSSLDIFGGNLVKFEDCCRWNEKQ 259
>pdb|4GJ1|A Chain A, Crystal Structure Of
1-(5-Phosphoribosyl)-5-[(5-Phosphoribosylamino)
Methylideneamino] Imidazole-4-Carboxamide Isomerase
(Hisa)
Length = 243
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 111/240 (46%), Gaps = 24/240 (10%)
Query: 58 PCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNF-ESDKSAAEFANLYKEDGLTGGHAIMLG 116
P +D+ G+V ++V + K + F E +K+ A+ +L LTG
Sbjct: 6 PALDLIDGEVVRLVKGDYEQKKVYKYNPLKKFKEYEKAGAKELHLVD---LTGAK----- 57
Query: 117 ADPLSKA-AAIEAL-HAYPGGLQVGGGINSDNSL-SYIEEGATHVIVTSYVFNNGQMDLE 173
DP + A IE L LQVGGGI S + + ++ G V++ S + + LE
Sbjct: 58 -DPSKRQFALIEKLAKEVSVNLQVGGGIRSKEEVKALLDCGVKRVVIGSXAIKDATLCLE 116
Query: 174 RLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYA-DEFLV 232
LK+ G + +VL L K+ Y + + WQ+ SD L E VLDF ++ L
Sbjct: 117 ILKEF----GSEAIVLALDTILKE-DYVVAVNAWQEASDKKLXE-VLDFYSNKGLKHILC 170
Query: 233 HGVDVEGKKLGIDDELVALLGKYSP-IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291
+ +G G++ L L+ + P I + +GGV ++ DLE +K G V VG AL
Sbjct: 171 TDISKDGTXQGVNVRLYKLIHEIFPNICIQASGGVASLKDLENLKGICSG---VIVGKAL 227
>pdb|1THF|D Chain D, Cyclase Subunit Of Imidazoleglycerolphosphate Synthase
From Thermotoga Maritima
Length = 253
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 22/223 (9%)
Query: 52 CAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGH 111
A R C+D+ G+V + GS ++ +D G E Y E G+
Sbjct: 2 LAKRIIACLDVKDGRV--VKGSNFENLRDSG-----------DPVELGKFYSEIGIDELV 48
Query: 112 AIMLGADPLSKAAAIEALHAYPGGL----QVGGGINSDNSLS-YIEEGATHVIVTSYVFN 166
+ + A + +E + + VGGGI+ + S I GA V + +
Sbjct: 49 FLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVE 108
Query: 167 NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASY 226
N + + + + G Q +V+ + ++ DG++ + T +K + + L + V++
Sbjct: 109 NPSL----ITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRG 164
Query: 227 ADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTM 269
A E L+ +D +G K G D E++ + + +P+ +GG M
Sbjct: 165 AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKM 207
>pdb|2A0N|A Chain A, Crystal Structure Of Imidazole Glycerol Phosphate Synthase
Subunit Hisf (ec 4.1.3.-) (tm1036) From Thermotoga
Maritima At 1.64 A Resolution
Length = 265
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 95/223 (42%), Gaps = 22/223 (9%)
Query: 52 CAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGH 111
A R C+D+ G+V + G+ ++ +D G E Y E G+
Sbjct: 14 LAKRIIACLDVKDGRV--VKGTNFENLRDSG-----------DPVELGKFYSEIGIDELV 60
Query: 112 AIMLGADPLSKAAAIEALHAYPGGL----QVGGGINSDNSLS-YIEEGATHVIVTSYVFN 166
+ + A + +E + + VGGGI+ + S I GA V + +
Sbjct: 61 FLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVE 120
Query: 167 NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASY 226
N + + + + G Q +V+ + ++ DG++ + T +K + + L + V++
Sbjct: 121 NPSL----ITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRG 176
Query: 227 ADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTM 269
A E L+ +D +G K G D E++ + + +P+ +GG M
Sbjct: 177 AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKM 219
>pdb|2WJZ|A Chain A, Crystal Structure Of (Hish) K181a Y138a Mutant Of
Imidazoleglycerolphosphate Synthase (Hish Hisf) Which
Displays Constitutive Glutaminase Activity
pdb|2WJZ|C Chain C, Crystal Structure Of (Hish) K181a Y138a Mutant Of
Imidazoleglycerolphosphate Synthase (Hish Hisf) Which
Displays Constitutive Glutaminase Activity
pdb|2WJZ|E Chain E, Crystal Structure Of (Hish) K181a Y138a Mutant Of
Imidazoleglycerolphosphate Synthase (Hish Hisf) Which
Displays Constitutive Glutaminase Activity
pdb|3ZR4|A Chain A, Structural Evidence For Ammonia Tunneling Across The
(Beta- Alpha)8 Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
pdb|3ZR4|C Chain C, Structural Evidence For Ammonia Tunneling Across The
(Beta- Alpha)8 Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
pdb|3ZR4|E Chain E, Structural Evidence For Ammonia Tunneling Across The
(Beta- Alpha)8 Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
Length = 253
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 95/223 (42%), Gaps = 22/223 (9%)
Query: 52 CAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGH 111
A R C+D+ G+V + G+ ++ +D G E Y E G+
Sbjct: 2 LAKRIIACLDVKDGRV--VKGTNFENLRDSG-----------DPVELGKFYSEIGIDELV 48
Query: 112 AIMLGADPLSKAAAIEALHAYPGGL----QVGGGINSDNSLS-YIEEGATHVIVTSYVFN 166
+ + A + +E + + VGGGI+ + S I GA V + +
Sbjct: 49 FLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVE 108
Query: 167 NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASY 226
N + + + + G Q +V+ + ++ DG++ + T +K + + L + V++
Sbjct: 109 NPSL----ITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRG 164
Query: 227 ADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTM 269
A E L+ +D +G K G D E++ + + +P+ +GG M
Sbjct: 165 AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKM 207
>pdb|1VH7|A Chain A, Crystal Structure Of A Cyclase Subunit Of
Imidazolglycerolphosphate Synthase
Length = 265
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 95/223 (42%), Gaps = 22/223 (9%)
Query: 52 CAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGH 111
A R C+D+ G+V + G+ ++ +D G E Y E G+
Sbjct: 4 LAKRIIACLDVKDGRV--VKGTNFENLRDSG-----------DPVELGKFYSEIGIDELV 50
Query: 112 AIMLGADPLSKAAAIEALHAYPGGL----QVGGGINSDNSLS-YIEEGATHVIVTSYVFN 166
+ + A + +E + + VGGGI+ + S I GA V + +
Sbjct: 51 FLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVE 110
Query: 167 NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASY 226
N + + + + G Q +V+ + ++ DG++ + T +K + + L + V++
Sbjct: 111 NPSL----ITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRG 166
Query: 227 ADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTM 269
A E L+ +D +G K G D E++ + + +P+ +GG M
Sbjct: 167 AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKM 209
>pdb|1GPW|A Chain A, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1GPW|C Chain C, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1GPW|E Chain E, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex
Length = 253
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 95/223 (42%), Gaps = 22/223 (9%)
Query: 52 CAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGH 111
A R C+++ G+V + G+ ++ +D G E Y E G+
Sbjct: 2 LAKRIIACLNVKDGRV--VKGTNFENLRDSG-----------DPVELGKFYSEIGIDELV 48
Query: 112 AIMLGADPLSKAAAIEALHAYPGGL----QVGGGINSDNSLS-YIEEGATHVIVTSYVFN 166
+ + A + +E + + VGGGI+ + S I GA V + +
Sbjct: 49 FLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVE 108
Query: 167 NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASY 226
N + + + + G Q +V+ + ++ DG++ + T +K + + L + V++
Sbjct: 109 NPSL----ITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRG 164
Query: 227 ADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTM 269
A E L+ +D +G K G D E++ + + +P+ +GG M
Sbjct: 165 AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKM 207
>pdb|4EWN|D Chain D, Structure Of Hisf-D130v+d176v With Bound Rcdrp
Length = 253
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 22/223 (9%)
Query: 52 CAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGH 111
A R C+D+ G+V + G+ ++ +D G E Y E G+
Sbjct: 2 LAKRIIACLDVKDGRV--VKGTNFENLRDSG-----------DPVELGKFYSEIGIDELV 48
Query: 112 AIMLGADPLSKAAAIEALHAYPGGL----QVGGGINSDNSLS-YIEEGATHVIVTSYVFN 166
+ + A + +E + + VGGGI+ + S I GA V + +
Sbjct: 49 FLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVE 108
Query: 167 NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASY 226
N + + + + G Q +V+ + ++ DG++ + T +K + + L + V++
Sbjct: 109 NPSL----ITQIAQTFGSQAVVVAIVAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRG 164
Query: 227 ADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTM 269
A E L+ +D G K G D E++ + + +P+ +GG M
Sbjct: 165 AGEILLTSIDRVGTKSGYDTEMIRFVRPLTTLPIIASGGAGKM 207
>pdb|3OG3|A Chain A, Crystal Structure Of An Artificial Thermostable
(Ba)8-Barrel Protein From Identical Half Barrels
Length = 251
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 69/151 (45%), Gaps = 4/151 (2%)
Query: 139 GGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDG 198
GG ++ L GA V + + N + + + + G Q +V+ + ++ DG
Sbjct: 81 GGAGKMEHFLEAFLAGADKVSINTAAVENPSL----ITQIAQTFGSQAVVVAIDAKRVDG 136
Query: 199 KYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPI 258
++ + T +K + + L + V++ A E L+ +D +G K G D E++ + + +
Sbjct: 137 EFMVFTHSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTL 196
Query: 259 PVTYAGGVTTMADLEKIKVAGIGRVDVTVGS 289
P+ +GG M + +AG +V + +
Sbjct: 197 PIIASGGAGKMEHFLEAFLAGADKVSINTAA 227
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 54/105 (51%)
Query: 185 QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI 244
QR+V+ + ++ DG++ + T +K + + L + V++ A E L+ +D +G K G
Sbjct: 2 QRVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGY 61
Query: 245 DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGS 289
D E++ + + +P+ +GG M + +AG +V + +
Sbjct: 62 DTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKVSINTAA 106
>pdb|2W6R|A Chain A, Crystal Structure Of An Artificial (Ba)8-Barrel Protein
Designed From Identical Half Barrels
Length = 266
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 67/133 (50%), Gaps = 3/133 (2%)
Query: 139 GGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGK--QRLVLDLSCRKK 196
GG ++ L GA + S VF+ ++D+ LK+ ++ G Q +V+ + ++
Sbjct: 81 GGAGKMEHFLEAFLAGADKALAAS-VFHFREIDMRELKEYLKKHGGSGQAVVVAIDAKRV 139
Query: 197 DGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS 256
DG++ + T +K + + L + V++ A E L+ +D +G K G D E++ + +
Sbjct: 140 DGEFMVFTHSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLT 199
Query: 257 PIPVTYAGGVTTM 269
+P+ +GG M
Sbjct: 200 TLPIIASGGAGKM 212
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 50/95 (52%)
Query: 185 QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI 244
QR+V+ + ++ DG++ + T +K + + L + V++ A E L+ +D +G K G
Sbjct: 2 QRVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGY 61
Query: 245 DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAG 279
D E++ + + +P+ +GG M + +AG
Sbjct: 62 DTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAG 96
>pdb|2LLE|A Chain A, Computational Design Of An Eight-Stranded
(BetaALPHA)-Barrel From Fragments Of Different Folds
Length = 234
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 148 LSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRW 207
+ I+ GA IV + N + + L + G Q +V+ + ++ DG++ + T
Sbjct: 69 IEAIKAGAKGFIVNTAAVENPSL----ITQLAQTFGSQAVVVAIDAKRVDGEFMVFTYSG 124
Query: 208 QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVT 267
+K + + L + V++ A E L+ +D +G K G D E++ + + +P+ +GG
Sbjct: 125 KKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAG 184
Query: 268 TM 269
M
Sbjct: 185 KM 186
>pdb|3TDN|A Chain A, Computationally Designed Two-Fold Symmetric Tim-Barrel
Protein, Flr
pdb|3TDN|B Chain B, Computationally Designed Two-Fold Symmetric Tim-Barrel
Protein, Flr
Length = 247
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 61/131 (46%), Gaps = 4/131 (3%)
Query: 139 GGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDG 198
GG ++ L GA V + + N + + + + G Q +V+ + ++ DG
Sbjct: 86 GGAGKMEHFLEAFLRGADKVSINTAAVENPSL----ITQIAQTFGSQAVVVAIDAKRVDG 141
Query: 199 KYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPI 258
++ + T +K + + L + V++ A E L+ +D +G K G D E++ + + +
Sbjct: 142 EFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTL 201
Query: 259 PVTYAGGVTTM 269
P+ +GG M
Sbjct: 202 PIIASGGAGKM 212
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 45/85 (52%)
Query: 185 QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI 244
Q +V+ + ++ DG++ + T +K + + L + V++ A E L+ +D +G K G
Sbjct: 7 QAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGY 66
Query: 245 DDELVALLGKYSPIPVTYAGGVTTM 269
D E++ + + +P+ +GG M
Sbjct: 67 DTEMIRFVRPLTTLPIIASGGAGKM 91
>pdb|3CWO|X Chain X, A BetaALPHA-Barrel Built By The Combination Of Fragments
From Different Folds
Length = 237
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 148 LSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRW 207
+ I+ GA IV + N + + + + G Q +V+ + ++ DG++ + T
Sbjct: 69 IEAIKAGAKDFIVNTAAVENPSL----ITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSG 124
Query: 208 QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVT 267
+K + + L + V++ A E L+ +D +G K G D E++ + + +P+ +GG
Sbjct: 125 KKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAG 184
Query: 268 TM 269
M
Sbjct: 185 KM 186
>pdb|2RKX|A Chain A, The 3d Structure Of Chain D, Cyclase Subunit Of
Imidazoleglycerol_evolvedcerolphosphate Synthase
Length = 255
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 68/145 (46%), Gaps = 5/145 (3%)
Query: 136 LQVGGGINSDNSLS-YIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCR 194
VGGGI+ + S I GA V + + N + + + + G Q +V+ ++ +
Sbjct: 77 FTVGGGIHDFETASELILRGADKVEINTAAVENPSL----ITQIAQTFGSQAVVVYIAAK 132
Query: 195 KKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGK 254
+ DG++ + T +K + + L + V++ A E ++ +D G K G D E++ +
Sbjct: 133 RVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEIVLGSIDRLGTKSGYDTEMIRFVRP 192
Query: 255 YSPIPVTYAGGVTTMADLEKIKVAG 279
+ +P+ GG M + +AG
Sbjct: 193 LTTLPIIAHGGAGKMEHFLEAFLAG 217
>pdb|1H5Y|A Chain A, Hisf Protein From Pyrobaculum Aerophilum
pdb|1H5Y|B Chain B, Hisf Protein From Pyrobaculum Aerophilum
Length = 253
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 20/218 (9%)
Query: 53 AVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHA 112
A+R PC+DI G + G Q ++ G + E A Y+E+G
Sbjct: 4 ALRIIPCLDIDGGAKVVVKGVNFQGIREVGDPV-----------EMAVRYEEEGADEIAI 52
Query: 113 IMLGADPLSKAAAIEAL----HAYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNN 167
+ + A P +A I+++ A + VGGG+ S +++ + GA V V + N
Sbjct: 53 LDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVRN 112
Query: 168 GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYA 227
Q+ + L R G Q V+ + + Y + ++ + + + + A
Sbjct: 113 PQL----VALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGA 168
Query: 228 DEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGG 265
E L+ +D +G LG D EL+ + IPV +GG
Sbjct: 169 GEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGG 206
>pdb|3IIO|A Chain A, Evolutionary Optimization Of Computationally Designed
Enzymes: Kemp Eliminases Of The Ke07 Series
pdb|3IIO|B Chain B, Evolutionary Optimization Of Computationally Designed
Enzymes: Kemp Eliminases Of The Ke07 Series
pdb|3IIO|C Chain C, Evolutionary Optimization Of Computationally Designed
Enzymes: Kemp Eliminases Of The Ke07 Series
pdb|3IIO|D Chain D, Evolutionary Optimization Of Computationally Designed
Enzymes: Kemp Eliminases Of The Ke07 Series
pdb|3IIO|E Chain E, Evolutionary Optimization Of Computationally Designed
Enzymes: Kemp Eliminases Of The Ke07 Series
pdb|3IIO|F Chain F, Evolutionary Optimization Of Computationally Designed
Enzymes: Kemp Eliminases Of The Ke07 Series
Length = 262
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 67/145 (46%), Gaps = 5/145 (3%)
Query: 136 LQVGGGINSDNSLS-YIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCR 194
VGGGI+ + S I GA V + + N + + + + G Q +V+ ++ +
Sbjct: 78 FTVGGGIHDFETASELILRGADKVEINTAAVENPSL----ITQIAQTFGSQAVVVYIAAK 133
Query: 195 KKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGK 254
+ DG++ + T +K + + L + V++ A E ++ +D G K G D E++ +
Sbjct: 134 RVDGEFMVFTYSGEKNTGILLRDWVVEVEKRGAGEIVLGSIDRLGTKSGYDTEMIRFVRP 193
Query: 255 YSPIPVTYAGGVTTMADLEKIKVAG 279
+ +P+ G M + +AG
Sbjct: 194 LTTLPIIAHRGAGKMEHFLEAFLAG 218
>pdb|3TDM|A Chain A, Computationally Designed Tim-Barrel Protein, Halfflr
pdb|3TDM|B Chain B, Computationally Designed Tim-Barrel Protein, Halfflr
pdb|3TDM|C Chain C, Computationally Designed Tim-Barrel Protein, Halfflr
pdb|3TDM|D Chain D, Computationally Designed Tim-Barrel Protein, Halfflr
Length = 126
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 51/101 (50%)
Query: 185 QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI 244
Q +V+ + ++ DG++ + T +K + + L + V++ A E L+ +D +G K G
Sbjct: 7 QAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGY 66
Query: 245 DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDV 285
D E++ + + +P+ +GG M + + G +V +
Sbjct: 67 DTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSI 107
>pdb|3IIP|A Chain A, Evolutionary Optimization Of Computationally Designed
Enzymes: Kemp Eliminases Of The Ke07 Series
pdb|3IIP|B Chain B, Evolutionary Optimization Of Computationally Designed
Enzymes: Kemp Eliminases Of The Ke07 Series
pdb|3IIP|C Chain C, Evolutionary Optimization Of Computationally Designed
Enzymes: Kemp Eliminases Of The Ke07 Series
pdb|3IIP|D Chain D, Evolutionary Optimization Of Computationally Designed
Enzymes: Kemp Eliminases Of The Ke07 Series
pdb|3IIP|E Chain E, Evolutionary Optimization Of Computationally Designed
Enzymes: Kemp Eliminases Of The Ke07 Series
pdb|3IIP|F Chain F, Evolutionary Optimization Of Computationally Designed
Enzymes: Kemp Eliminases Of The Ke07 Series
Length = 256
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 5/145 (3%)
Query: 136 LQVGGGINSDNSLS-YIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCR 194
VGGGI+ + S I GA V + + N + + + + G Q +V+ ++ +
Sbjct: 78 FTVGGGIHDFETASELILRGADKVEINTAAVENPSL----ITQIAQTFGSQAVVVYIAAK 133
Query: 195 KKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGK 254
+ DG++ + T K + + L + V++ A E ++ +D G K G D E++ +
Sbjct: 134 RVDGEFMVFTYSGTKNTGILLRDWVVEVEKRGAGEIVLGSIDRLGTKSGYDTEMIRFVRP 193
Query: 255 YSPIPVTYAGGVTTMADLEKIKVAG 279
+ +P+ G M + +AG
Sbjct: 194 LTTLPIIAHRGAGKMEHFLEAFLAG 218
>pdb|3IIV|A Chain A, Evolutionary Optimization Of Computationally Designed
Enzymes: Kemp Eliminases Of The Ke07 Series
pdb|3IIV|B Chain B, Evolutionary Optimization Of Computationally Designed
Enzymes: Kemp Eliminases Of The Ke07 Series
Length = 263
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 136 LQVGGGI-NSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCR 194
+ VGGGI + + + I GA V + + N + + + + G Q +V+ ++ +
Sbjct: 77 ITVGGGIYDFETASELILRGADKVEINTAAVENPSL----ITQIAQTFGSQAVVVYIAAK 132
Query: 195 KKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGK 254
+ DG++ + T K + + L + V++ A E ++ +D G K G D E++ +
Sbjct: 133 RVDGEFMVFTYSGTKNTGILLRDWVVEVEKRGAGEIVLGSIDRLGTKSGYDTEMIRFVRP 192
Query: 255 YSPIPV 260
+ +P+
Sbjct: 193 LTTLPI 198
>pdb|1KA9|F Chain F, Imidazole Glycerol Phosphate Synthase
Length = 252
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 93/218 (42%), Gaps = 14/218 (6%)
Query: 53 AVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHA 112
A R PC+D+H G+V + G + +D G + D++ A+ A
Sbjct: 4 AKRIVPCLDVHAGRV--VKGVNFVNLRDAGDPVEAARAYDEAGADELVFLDISATHEERA 61
Query: 113 IMLGADPLSKAAAIEALHAYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQMD 171
I+L D +++ A + L VGGG+ S +++ + GA V V S ++
Sbjct: 62 ILL--DVVARVAERVFIP-----LTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRPEL- 113
Query: 172 LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFL 231
+++L G Q +VL + R + + + + ++ E + + A E L
Sbjct: 114 ---IRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEIL 170
Query: 232 VHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTM 269
+ +D +G K G D L ++ + +PV +GG M
Sbjct: 171 LTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRM 208
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 227 ADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVT 286
ADE + + ++ I ++VA + + IP+T GGV ++ D K+ ++G +V V
Sbjct: 45 ADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVN 104
>pdb|2Y85|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Phosphoribosyl Isomerase With Bound Rcdrp
pdb|2Y85|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Phosphoribosyl Isomerase With Bound Rcdrp
pdb|2Y85|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Phosphoribosyl Isomerase With Bound Rcdrp
pdb|2Y85|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
Phosphoribosyl Isomerase With Bound Rcdrp
pdb|3ZS4|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Phosphoribosyl Isomerase With Bound Prfar
Length = 244
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 92/226 (40%), Gaps = 29/226 (12%)
Query: 58 PCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGA 117
P +D+ +G+ ++V + G+ + + AE+ +L D G
Sbjct: 7 PAVDVVEGRAVRLVQGKAGSQTEYGSAVDAALGWQRDGAEWIHLVDLDAAFG-------- 58
Query: 118 DPLSKAAAIEALHAYPGGLQV----GGGINSDNSLSY-IEEGATHVIVTSYVFNNGQMDL 172
+ + E L G L V GGI D SL+ + G V V + N Q
Sbjct: 59 ----RGSNHELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGTAALENPQW-- 112
Query: 173 ERLKDLVRVVGKQ--RLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASY-ADE 229
RV+G+ ++ + L + DG++ + W+ D VL+ L S
Sbjct: 113 -----CARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGGDLWD--VLERLDSEGCSR 165
Query: 230 FLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKI 275
F+V + +G G + +L+A + + PV +GGV+++ DL I
Sbjct: 166 FVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAI 211
>pdb|2Y88|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Phosphoribosyl Isomerase (Variant D11n) With Bound Prfar
pdb|2Y89|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Phosphoribosyl Isomerase A (Variant D11n)
Length = 244
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 13/144 (9%)
Query: 136 LQVGGGINSDNSLSY-IEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQ--RLVLDLS 192
+++ GGI D SL+ + G V V + N Q RV+G+ ++ + L
Sbjct: 77 VELSGGIRDDESLAAALATGCARVNVGTAALENPQW-------CARVIGEHGDQVAVGLD 129
Query: 193 CRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASY-ADEFLVHGVDVEGKKLGIDDELVAL 251
+ DG++ + W+ D VL+ L S F+V + +G G + +L+A
Sbjct: 130 VQIIDGEHRLRGRGWETDGGDLWD--VLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAG 187
Query: 252 LGKYSPIPVTYAGGVTTMADLEKI 275
+ + PV +GGV+++ DL I
Sbjct: 188 VADRTDAPVIASGGVSSLDDLRAI 211
>pdb|2CFF|A Chain A, Crystal Structure Of N-((5'-Phosphoribosyl)-Formimino)-5-
Aminoimidazol-4-Carboxamid Ribonucleotid Isomerase
Mutant D127v (Ec 3.1.3.15, Hisa)
pdb|2CFF|B Chain B, Crystal Structure Of N-((5'-Phosphoribosyl)-Formimino)-5-
Aminoimidazol-4-Carboxamid Ribonucleotid Isomerase
Mutant D127v (Ec 3.1.3.15, Hisa)
Length = 241
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 20/117 (17%)
Query: 58 PCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLG- 116
P ID+ +GKV +++ G K T F +K E E+G T H + L
Sbjct: 5 PAIDLFRGKVARMI---------KGRKENTIF-YEKDPVELVEKLIEEGFTLIHVVDLSN 54
Query: 117 --ADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEE----GATHVIVTSYVFNN 167
+ +E L + +Q+GGGI SL Y E+ G IV+S V +
Sbjct: 55 AIENSGENLPVLEKLSEFAEHIQIGGGI---RSLDYAEKLRKLGYRRQIVSSKVLED 108
>pdb|2W79|A Chain A, Establishing Wild-Type Levels Of Catalytic Activity On
Natural And Artificial (Ba)8-Barrel Protein Scaffolds
pdb|2W79|B Chain B, Establishing Wild-Type Levels Of Catalytic Activity On
Natural And Artificial (Ba)8-Barrel Protein Scaffolds
Length = 241
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 20/117 (17%)
Query: 58 PCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLG- 116
P ID+ +GKV +++ G K T F +K E E+G T H + L
Sbjct: 5 PAIDLFRGKVARMI---------KGRKENTIF-YEKDPVELVEKLIEEGFTLIHVVDLSN 54
Query: 117 --ADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEE----GATHVIVTSYVFNN 167
+ +E L + +Q+GGGI SL Y E+ G IV+S V +
Sbjct: 55 AIENSGENLPVLEKLSEFAEYIQIGGGI---RSLDYAEKLRKLGYRRQIVSSKVLED 108
>pdb|3PZF|A Chain A, 1.75a Resolution Structure Of Serpin-2 From Anopheles
Gambiae
Length = 397
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 60 IDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLG--- 116
ID + KQ++ S QD+KD + TNF D E N Y++ T HA++
Sbjct: 83 IDHTRSYYKQLLESAQQDNKDYDLNIATNFFVD-DFIEVINKYQQIANTHYHAMLEKVSY 141
Query: 117 ADPLSKAAAI 126
++P AA I
Sbjct: 142 SNPTQTAATI 151
>pdb|1QO2|A Chain A, Crystal Structure Of N-((5'-Phosphoribosyl)-Formimino)-5-
Aminoimidazol-4-Carboxamid Ribonucleotid Isomerase (Ec
3.1.3.15, Hisa)
pdb|1QO2|B Chain B, Crystal Structure Of N-((5'-Phosphoribosyl)-Formimino)-5-
Aminoimidazol-4-Carboxamid Ribonucleotid Isomerase (Ec
3.1.3.15, Hisa)
Length = 241
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 20/117 (17%)
Query: 58 PCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLG- 116
P ID+ +GKV + + G K T F +K E E+G T H + L
Sbjct: 5 PAIDLFRGKVARXI---------KGRKENTIF-YEKDPVELVEKLIEEGFTLIHVVDLSN 54
Query: 117 --ADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEE----GATHVIVTSYVFNN 167
+ +E L + +Q+GGGI SL Y E+ G IV+S V +
Sbjct: 55 AIENSGENLPVLEKLSEFAEHIQIGGGI---RSLDYAEKLRKLGYRRQIVSSKVLED 108
>pdb|1GNT|A Chain A, Hybrid Cluster Protein From Desulfovibrio Vulgaris. X-Ray
Structure At 1.25a Resolution Using Synchrotron
Radiation.
pdb|1OA1|A Chain A, Reduced Hybrid Cluster Protein (Hcp) From Desulfovibrio
Vulgaris Hildenborough Structure At 1.55a Resolution
Using Synchrotron Radiation
Length = 553
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 219 VLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGG--VTTMADLEKIK 276
VL F + DEF++ + K L + DE+VAL+ K AGG VTTMA L++
Sbjct: 167 VLGFRKTEIDEFMLEALASTTKDLSV-DEMVALVMK--------AGGMAVTTMALLDEAN 217
Query: 277 VAGIGRVDVT 286
G ++T
Sbjct: 218 TTTYGNPEIT 227
>pdb|1E2U|A Chain A, Low Temperature Stucture Of Hybrid Cluster Protein From
Desulfovibrio Vulgaris To 1.6a
pdb|1E9V|A Chain A, Xenon Bound In Hydrophobic Channel Of Hybrid Cluster
Protein From Desulfovibrio Vulgaris
pdb|1W9M|A Chain A, As-Isolated Hybrid Cluster Protein From Desulfovibrio
Vulgaris X-Ray Structure At 1.35a Resolution Using Iron
Anomalous Signal
Length = 553
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 219 VLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGG--VTTMADLEKIK 276
VL F + DEF++ + K L + DE+VAL+ K AGG VTTMA L++
Sbjct: 167 VLGFRKTEIDEFMLEALASTTKDLSV-DEMVALVMK--------AGGMAVTTMALLDEAN 217
Query: 277 VAGIGRVDVT 286
G ++T
Sbjct: 218 TTTYGNPEIT 227
>pdb|2FJI|1 Chain 1, Crystal Structure Of The C-Terminal Domain Of The Exocyst
Subunit Sec6p
pdb|2FJI|2 Chain 2, Crystal Structure Of The C-Terminal Domain Of The Exocyst
Subunit Sec6p
Length = 399
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 186 RLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERV 219
+DLSC D + D WQK+ +VY D R+
Sbjct: 312 EFFMDLSCEPIDS----ILDIWQKYLEVYWDSRI 341
>pdb|2X30|A Chain A, Crystal Structure Of The R139n Mutant Of A Bifunctional
Enzyme Pria
Length = 240
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 92/227 (40%), Gaps = 27/227 (11%)
Query: 54 VRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAI 113
+ P +D+ G+ ++V G+ L +S AE+ +L D G
Sbjct: 4 LELLPAVDVRDGQAVRLVHGESGTETSYGSPLEAALAWQRSGAEWLHLVDLDAAFGTGD- 62
Query: 114 MLGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSY-IEEGATHVIVTSYVFNNGQMDL 172
++A E A +++ GGI D++L+ + G T V N G L
Sbjct: 63 -------NRALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRV-------NLGTAAL 108
Query: 173 ERLKDLVRVVGKQ--RLVLDLSCRKKDGKYAIVTDRWQK-FSDVYLDERVLDFLASY-AD 228
E + + +V+ + ++ + L R + + W + D+Y LD L
Sbjct: 109 ETPEWVAKVIAEHGDKIAVGLDVRGT----TLRGNGWTRDGGDLY---ETLDRLNKEGCA 161
Query: 229 EFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKI 275
++V + +G G + EL+ + + PV +GGV+++ DL I
Sbjct: 162 RYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAI 208
>pdb|1E1D|A Chain A, Hybrid Cluster Protein From Desulfovibrio Vulgaris
Length = 553
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 219 VLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVA 278
VL F + DEF++ + K L + DE+VAL+ K + VTTMA L++
Sbjct: 167 VLGFRKTEIDEFMLEALASTTKDLSV-DEMVALVMKGRRM------AVTTMALLDEANTT 219
Query: 279 GIGRVDVT 286
G ++T
Sbjct: 220 TYGNPEIT 227
>pdb|1TQJ|A Chain A, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|B Chain B, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|C Chain C, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|D Chain D, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|E Chain E, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|F Chain F, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
Length = 230
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 136 LQVGGGINSDNSLSYIEEGATHVIVTSYVFN 166
++V GG+ +N+ +E GA ++ S VFN
Sbjct: 176 IEVDGGLKPNNTWQVLEAGANAIVAGSAVFN 206
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,289,584
Number of Sequences: 62578
Number of extensions: 404794
Number of successful extensions: 1179
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1132
Number of HSP's gapped (non-prelim): 56
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)