Query 021156
Match_columns 316
No_of_seqs 277 out of 2021
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 08:02:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021156.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021156hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02446 (5-phosphoribosyl)-5- 100.0 1.8E-59 4E-64 428.9 30.2 258 54-311 1-261 (262)
2 COG0106 HisA Phosphoribosylfor 100.0 1.3E-56 2.8E-61 402.4 27.9 235 53-309 1-240 (241)
3 TIGR02129 hisA_euk phosphoribo 100.0 9E-53 2E-57 383.5 28.2 246 55-307 2-252 (253)
4 PRK14114 1-(5-phosphoribosyl)- 100.0 2.4E-52 5.3E-57 381.5 27.7 231 54-307 1-240 (241)
5 PF00977 His_biosynth: Histidi 100.0 1.7E-51 3.7E-56 373.9 21.7 224 55-299 1-229 (229)
6 PRK13586 1-(5-phosphoribosyl)- 100.0 4.1E-50 9E-55 365.0 27.4 223 53-299 1-227 (232)
7 TIGR01919 hisA-trpF 1-(5-phosp 100.0 6.7E-50 1.4E-54 366.1 28.1 234 53-306 2-241 (243)
8 COG0107 HisF Imidazoleglycerol 100.0 1.3E-49 2.7E-54 351.5 24.9 241 51-311 1-250 (256)
9 PRK13587 1-(5-phosphoribosyl)- 100.0 1.7E-49 3.6E-54 361.8 26.1 221 54-297 2-228 (234)
10 PRK14024 phosphoribosyl isomer 100.0 3.1E-49 6.6E-54 361.7 27.6 233 52-307 2-239 (241)
11 cd04723 HisA_HisF Phosphoribos 100.0 5E-46 1.1E-50 338.9 26.3 228 55-304 1-232 (233)
12 PRK04128 1-(5-phosphoribosyl)- 100.0 9.2E-45 2E-49 329.3 26.3 221 53-305 1-226 (228)
13 PRK02083 imidazole glycerol ph 100.0 8.5E-44 1.8E-48 327.7 28.3 239 52-311 2-248 (253)
14 TIGR00735 hisF imidazoleglycer 100.0 1.1E-43 2.5E-48 327.2 28.3 238 52-311 2-250 (254)
15 PRK01033 imidazole glycerol ph 100.0 2.6E-43 5.7E-48 325.5 29.8 239 52-311 2-255 (258)
16 PRK13585 1-(5-phosphoribosyl)- 100.0 2.7E-43 5.9E-48 321.6 28.2 233 53-307 2-239 (241)
17 PLN02617 imidazole glycerol ph 100.0 1.4E-43 3.1E-48 354.9 28.4 247 49-311 223-533 (538)
18 TIGR00734 hisAF_rel hisA/hisF 100.0 1.4E-43 3.1E-48 320.2 24.4 216 54-298 1-221 (221)
19 PRK00748 1-(5-phosphoribosyl)- 100.0 3.2E-43 6.9E-48 319.3 26.2 227 54-302 1-232 (233)
20 TIGR00007 phosphoribosylformim 100.0 7.9E-43 1.7E-47 316.5 26.2 224 56-301 1-229 (230)
21 cd04732 HisA HisA. Phosphorib 100.0 8.6E-42 1.9E-46 309.9 27.7 228 55-304 1-233 (234)
22 cd04731 HisF The cyclase subun 100.0 2.1E-39 4.6E-44 296.6 29.2 236 54-309 1-242 (243)
23 TIGR03572 WbuZ glycosyl amidat 100.0 3.5E-38 7.5E-43 286.7 28.0 221 52-291 2-230 (232)
24 KOG3055 Phosphoribosylformimin 100.0 2.3E-38 4.9E-43 272.3 22.4 260 50-313 3-262 (263)
25 COG1411 Uncharacterized protei 100.0 3.7E-30 7.9E-35 223.0 18.1 221 54-304 1-224 (229)
26 KOG0623 Glutamine amidotransfe 99.9 2.5E-24 5.5E-29 199.8 18.2 253 51-310 227-535 (541)
27 cd00331 IGPS Indole-3-glycerol 99.9 1.4E-20 3E-25 169.4 19.3 176 92-298 30-209 (217)
28 TIGR01768 GGGP-family geranylg 99.7 5E-18 1.1E-22 152.8 8.4 136 22-179 76-222 (223)
29 cd02812 PcrB_like PcrB_like pr 99.7 2.3E-17 4.9E-22 148.4 10.3 134 22-179 75-218 (219)
30 PF01884 PcrB: PcrB family; I 99.7 2.9E-18 6.4E-23 154.7 2.9 138 21-181 79-226 (230)
31 PRK04169 geranylgeranylglycery 99.7 2.4E-16 5.1E-21 143.1 10.4 137 22-180 81-229 (232)
32 COG0042 tRNA-dihydrouridine sy 99.6 1.8E-15 4E-20 144.1 13.0 131 161-309 113-246 (323)
33 PRK01033 imidazole glycerol ph 99.6 3.5E-15 7.6E-20 138.1 13.9 117 184-307 3-120 (258)
34 PRK10415 tRNA-dihydrouridine s 99.6 2.9E-15 6.3E-20 142.8 13.6 133 161-310 111-244 (321)
35 cd04731 HisF The cyclase subun 99.6 4.5E-15 9.8E-20 135.8 13.4 115 186-307 2-117 (243)
36 TIGR01769 GGGP geranylgeranylg 99.6 1.3E-15 2.7E-20 136.0 9.2 123 22-161 74-205 (205)
37 TIGR00735 hisF imidazoleglycer 99.6 4.2E-14 9E-19 130.5 12.9 115 184-307 3-120 (254)
38 TIGR03572 WbuZ glycosyl amidat 99.5 8E-14 1.7E-18 126.7 14.0 112 184-304 3-117 (232)
39 PRK04128 1-(5-phosphoribosyl)- 99.5 6.9E-14 1.5E-18 127.2 12.4 101 186-297 3-108 (228)
40 TIGR00737 nifR3_yhdG putative 99.5 3.1E-13 6.6E-18 128.7 15.4 164 134-310 65-242 (319)
41 PRK00748 1-(5-phosphoribosyl)- 99.5 2.2E-13 4.7E-18 123.6 13.4 113 186-307 2-120 (233)
42 PRK02083 imidazole glycerol ph 99.5 2.1E-13 4.6E-18 125.6 13.1 117 184-307 3-120 (253)
43 PRK01130 N-acetylmannosamine-6 99.5 1.7E-12 3.7E-17 117.2 18.7 196 61-302 2-214 (221)
44 cd02801 DUS_like_FMN Dihydrour 99.5 4.9E-13 1.1E-17 120.9 13.3 155 133-305 56-228 (231)
45 PRK10550 tRNA-dihydrouridine s 99.5 7.4E-13 1.6E-17 125.7 13.9 158 133-304 64-238 (312)
46 COG0107 HisF Imidazoleglycerol 99.5 6.1E-13 1.3E-17 118.7 11.4 119 184-309 3-122 (256)
47 PF01207 Dus: Dihydrouridine s 99.4 8E-14 1.7E-18 132.2 5.6 125 161-302 100-225 (309)
48 COG1646 Predicted phosphate-bi 99.4 7.1E-13 1.5E-17 118.6 10.8 140 21-183 90-238 (240)
49 PRK11815 tRNA-dihydrouridine s 99.4 1.5E-12 3.4E-17 124.7 13.0 130 161-308 111-251 (333)
50 TIGR00742 yjbN tRNA dihydrouri 99.4 4.8E-12 1E-16 120.5 13.9 158 133-308 56-241 (318)
51 PF04131 NanE: Putative N-acet 99.4 2.7E-12 5.9E-17 112.1 9.2 169 98-307 4-186 (192)
52 KOG2335 tRNA-dihydrouridine sy 99.3 5.7E-12 1.2E-16 119.2 11.2 121 161-300 119-243 (358)
53 PRK14024 phosphoribosyl isomer 99.3 1.8E-11 4E-16 112.2 14.1 113 186-307 5-121 (241)
54 COG0106 HisA Phosphoribosylfor 99.3 2.2E-11 4.8E-16 110.3 13.7 113 186-310 3-121 (241)
55 TIGR00007 phosphoribosylformim 99.3 4E-11 8.7E-16 108.7 13.3 113 187-306 1-117 (230)
56 cd04732 HisA HisA. Phosphorib 99.3 7.3E-11 1.6E-15 107.1 13.5 115 186-307 1-119 (234)
57 PRK13587 1-(5-phosphoribosyl)- 99.3 7.3E-11 1.6E-15 107.8 12.8 113 186-305 3-120 (234)
58 PF00977 His_biosynth: Histidi 99.3 3E-11 6.5E-16 110.0 10.1 115 186-309 1-121 (229)
59 cd04729 NanE N-acetylmannosami 99.2 9.3E-10 2E-14 99.3 19.2 173 88-295 22-211 (219)
60 TIGR00736 nifR3_rel_arch TIM-b 99.2 4.6E-10 9.9E-15 102.2 17.1 182 95-299 31-229 (231)
61 PRK00278 trpC indole-3-glycero 99.2 1.4E-09 3E-14 100.9 20.5 181 92-304 69-253 (260)
62 PRK14114 1-(5-phosphoribosyl)- 99.2 1.6E-10 3.4E-15 106.0 13.4 112 186-305 2-117 (241)
63 PRK13586 1-(5-phosphoribosyl)- 99.2 1.9E-10 4E-15 105.0 13.5 111 186-305 3-117 (232)
64 PLN02446 (5-phosphoribosyl)-5- 99.2 1.7E-10 3.8E-15 106.3 13.0 113 186-310 2-132 (262)
65 cd04727 pdxS PdxS is a subunit 99.2 2.2E-09 4.8E-14 99.2 19.3 168 94-291 17-228 (283)
66 cd04723 HisA_HisF Phosphoribos 99.2 2.9E-10 6.2E-15 103.8 13.1 111 186-305 1-121 (233)
67 PRK13585 1-(5-phosphoribosyl)- 99.1 6.9E-10 1.5E-14 101.3 13.4 114 186-306 4-121 (241)
68 TIGR01919 hisA-trpF 1-(5-phosp 99.1 9E-10 2E-14 101.2 13.4 110 186-305 4-118 (243)
69 TIGR00343 pyridoxal 5'-phospha 99.1 5.3E-09 1.1E-13 96.8 17.8 168 94-291 19-231 (287)
70 COG3010 NanE Putative N-acetyl 99.1 2.5E-09 5.5E-14 94.2 14.4 173 97-309 37-224 (229)
71 PRK04180 pyridoxal biosynthesi 99.1 4.8E-09 1E-13 97.3 16.5 168 94-291 26-237 (293)
72 TIGR02129 hisA_euk phosphoribo 99.1 2.5E-09 5.4E-14 98.3 12.9 111 186-310 2-125 (253)
73 cd04722 TIM_phosphate_binding 99.0 2E-08 4.3E-13 86.8 17.0 174 94-289 13-200 (200)
74 cd02940 DHPD_FMN Dihydropyrimi 99.0 7.5E-09 1.6E-13 97.8 13.2 153 136-305 104-297 (299)
75 TIGR00734 hisAF_rel hisA/hisF 99.0 6.9E-09 1.5E-13 94.0 12.3 110 186-303 2-121 (221)
76 PLN02617 imidazole glycerol ph 99.0 3.9E-09 8.4E-14 106.9 11.7 109 184-297 227-361 (538)
77 cd04740 DHOD_1B_like Dihydroor 99.0 2.7E-08 5.9E-13 93.6 16.3 153 134-308 92-278 (296)
78 cd02911 arch_FMN Archeal FMN-b 98.9 1.2E-08 2.5E-13 93.3 11.8 107 171-304 124-232 (233)
79 PRK07259 dihydroorotate dehydr 98.9 7E-08 1.5E-12 91.1 17.1 139 147-307 110-280 (301)
80 PRK05458 guanosine 5'-monophos 98.9 3.1E-08 6.7E-13 94.4 12.9 165 97-291 52-233 (326)
81 TIGR01163 rpe ribulose-phospha 98.9 4.3E-07 9.3E-12 80.7 19.5 179 95-304 13-206 (210)
82 TIGR03151 enACPred_II putative 98.9 1.2E-07 2.6E-12 90.0 16.8 164 93-291 23-193 (307)
83 PLN02274 inosine-5'-monophosph 98.8 1.6E-07 3.4E-12 94.8 18.1 175 93-291 182-383 (505)
84 PRK08318 dihydropyrimidine deh 98.8 1.7E-07 3.8E-12 92.5 17.5 143 147-306 119-299 (420)
85 TIGR01037 pyrD_sub1_fam dihydr 98.8 9.5E-08 2.1E-12 90.1 14.4 144 147-308 109-281 (300)
86 cd04730 NPD_like 2-Nitropropan 98.8 2.3E-07 5E-12 84.1 15.1 131 145-309 71-206 (236)
87 cd02810 DHOD_DHPD_FMN Dihydroo 98.8 8.1E-08 1.8E-12 90.0 11.8 144 145-304 115-287 (289)
88 PRK00043 thiE thiamine-phospha 98.8 9.8E-07 2.1E-11 78.5 18.2 172 94-305 22-202 (212)
89 PRK06843 inosine 5-monophospha 98.7 1.7E-07 3.7E-12 91.7 13.9 132 135-291 141-288 (404)
90 PRK09140 2-dehydro-3-deoxy-6-p 98.7 1.7E-06 3.6E-11 77.7 18.6 173 93-309 22-198 (206)
91 cd02803 OYE_like_FMN_family Ol 98.7 4E-07 8.7E-12 86.7 14.4 148 146-304 146-325 (327)
92 TIGR01302 IMP_dehydrog inosine 98.7 1.1E-06 2.3E-11 87.8 17.1 184 93-302 161-368 (450)
93 PRK13957 indole-3-glycerol-pho 98.7 4.2E-06 9.1E-11 76.9 19.5 169 93-297 61-237 (247)
94 cd00429 RPE Ribulose-5-phospha 98.6 4.9E-06 1.1E-10 73.8 19.4 180 95-305 14-208 (211)
95 cd04741 DHOD_1A_like Dihydroor 98.6 5.2E-07 1.1E-11 85.2 13.7 158 136-309 96-292 (294)
96 cd00381 IMPDH IMPDH: The catal 98.6 8.2E-07 1.8E-11 85.0 14.8 168 94-291 47-229 (325)
97 PRK07695 transcriptional regul 98.6 6.4E-06 1.4E-10 73.3 19.4 156 97-291 19-180 (201)
98 PRK08883 ribulose-phosphate 3- 98.6 9.6E-06 2.1E-10 73.5 20.5 184 94-308 10-212 (220)
99 cd04739 DHOD_like Dihydroorota 98.6 2.5E-06 5.3E-11 81.7 17.5 141 147-305 118-282 (325)
100 cd00564 TMP_TenI Thiamine mono 98.6 5.7E-06 1.2E-10 72.1 18.5 164 94-296 13-184 (196)
101 cd00452 KDPG_aldolase KDPG and 98.6 2.4E-06 5.2E-11 75.5 16.0 157 93-295 16-176 (190)
102 PF00218 IGPS: Indole-3-glycer 98.6 2.5E-06 5.5E-11 78.8 16.4 172 92-297 67-245 (254)
103 cd04738 DHOD_2_like Dihydrooro 98.6 4.2E-07 9.1E-12 87.0 11.6 138 153-305 159-325 (327)
104 PRK05567 inosine 5'-monophosph 98.6 3.1E-06 6.7E-11 85.3 17.9 176 92-291 164-363 (486)
105 PRK07565 dihydroorotate dehydr 98.6 4.7E-06 1E-10 80.0 17.9 158 130-305 98-284 (334)
106 cd04733 OYE_like_2_FMN Old yel 98.6 5.4E-07 1.2E-11 86.6 11.4 148 146-304 154-336 (338)
107 PTZ00314 inosine-5'-monophosph 98.6 3.4E-06 7.3E-11 85.1 17.4 175 93-291 178-376 (495)
108 PRK05286 dihydroorotate dehydr 98.5 3.8E-07 8.2E-12 87.9 10.0 141 153-309 168-338 (344)
109 TIGR01306 GMP_reduct_2 guanosi 98.5 3.2E-06 6.8E-11 80.5 15.7 168 97-291 49-230 (321)
110 cd04734 OYE_like_3_FMN Old yel 98.5 1.7E-06 3.6E-11 83.5 13.2 88 214-304 229-329 (343)
111 cd02809 alpha_hydroxyacid_oxid 98.5 2.7E-06 5.8E-11 80.4 13.5 133 135-291 119-259 (299)
112 cd04726 KGPDC_HPS 3-Keto-L-gul 98.5 1.2E-05 2.6E-10 71.1 16.8 177 94-303 14-198 (202)
113 cd04728 ThiG Thiazole synthase 98.5 1.7E-06 3.7E-11 78.9 11.0 75 216-295 134-209 (248)
114 PRK04169 geranylgeranylglycery 98.5 2E-05 4.3E-10 71.9 18.0 65 229-298 156-221 (232)
115 cd04724 Tryptophan_synthase_al 98.4 1.4E-05 3.1E-10 73.3 17.1 171 94-291 15-218 (242)
116 PRK07807 inosine 5-monophospha 98.4 1.5E-06 3.3E-11 87.2 11.4 174 94-291 166-362 (479)
117 cd02932 OYE_YqiM_FMN Old yello 98.4 5.7E-06 1.2E-10 79.4 14.4 147 146-303 159-333 (336)
118 COG0134 TrpC Indole-3-glycerol 98.4 1.3E-05 2.9E-10 73.6 15.9 173 92-298 65-244 (254)
119 PRK13523 NADPH dehydrogenase N 98.4 2.8E-06 6.1E-11 81.7 12.1 92 214-308 228-323 (337)
120 cd02933 OYE_like_FMN Old yello 98.4 5.3E-06 1.1E-10 79.9 14.0 149 146-304 157-328 (338)
121 PRK07028 bifunctional hexulose 98.4 2.7E-05 5.8E-10 77.3 19.4 180 94-305 17-204 (430)
122 PLN02334 ribulose-phosphate 3- 98.4 7.7E-05 1.7E-09 67.8 20.8 181 95-305 22-216 (229)
123 PRK05581 ribulose-phosphate 3- 98.4 5.8E-05 1.2E-09 67.6 19.6 178 95-305 18-212 (220)
124 PRK00208 thiG thiazole synthas 98.4 2.5E-06 5.4E-11 77.9 10.6 75 216-295 134-209 (250)
125 KOG2333 Uncharacterized conser 98.4 1.5E-06 3.3E-11 85.1 9.8 155 134-305 322-500 (614)
126 TIGR00693 thiE thiamine-phosph 98.4 5.2E-05 1.1E-09 66.8 18.9 163 94-295 14-185 (196)
127 TIGR01769 GGGP geranylgeranylg 98.4 2.3E-05 5E-10 70.2 16.6 180 95-288 13-205 (205)
128 TIGR03128 RuMP_HxlA 3-hexulose 98.4 9.1E-05 2E-09 65.9 20.1 134 146-307 68-202 (206)
129 PF03437 BtpA: BtpA family; I 98.4 0.00018 3.9E-09 66.5 22.4 196 95-309 31-251 (254)
130 PLN02460 indole-3-glycerol-pho 98.4 2E-05 4.2E-10 75.4 16.1 176 93-299 139-326 (338)
131 cd02812 PcrB_like PcrB_like pr 98.3 2.2E-06 4.8E-11 77.4 9.0 73 215-296 137-210 (219)
132 TIGR00262 trpA tryptophan synt 98.3 8.4E-06 1.8E-10 75.5 12.4 134 132-291 86-230 (256)
133 TIGR00259 thylakoid_BtpA membr 98.3 0.00022 4.7E-09 66.0 21.2 195 95-309 30-251 (257)
134 TIGR01768 GGGP-family geranylg 98.3 5.4E-05 1.2E-09 68.6 16.8 184 94-296 15-214 (223)
135 PF00478 IMPDH: IMP dehydrogen 98.3 1.3E-05 2.8E-10 77.3 13.2 171 94-291 50-243 (352)
136 PRK13802 bifunctional indole-3 98.3 5.4E-05 1.2E-09 79.0 18.8 185 93-308 70-258 (695)
137 cd02931 ER_like_FMN Enoate red 98.3 1.3E-05 2.7E-10 78.5 13.0 88 215-305 254-350 (382)
138 COG0167 PyrD Dihydroorotate de 98.3 1.5E-05 3.3E-10 75.5 12.9 145 145-306 112-287 (310)
139 PRK04302 triosephosphate isome 98.3 2.9E-05 6.3E-10 70.3 14.3 131 147-305 78-216 (223)
140 TIGR01303 IMP_DH_rel_1 IMP deh 98.2 4.3E-05 9.4E-10 76.7 16.6 172 93-291 163-360 (475)
141 PF02581 TMP-TENI: Thiamine mo 98.2 8.2E-05 1.8E-09 65.1 16.3 160 94-291 13-180 (180)
142 PRK08745 ribulose-phosphate 3- 98.2 0.00049 1.1E-08 62.6 21.7 182 97-309 20-217 (223)
143 PRK13125 trpA tryptophan synth 98.2 9.8E-05 2.1E-09 67.8 17.4 157 125-309 65-235 (244)
144 PRK07455 keto-hydroxyglutarate 98.2 0.00011 2.3E-09 65.1 16.3 158 94-295 25-185 (187)
145 PRK07107 inosine 5-monophospha 98.2 5.6E-05 1.2E-09 76.4 16.2 176 93-291 180-384 (502)
146 PRK08649 inosine 5-monophospha 98.2 3.8E-05 8.3E-10 74.7 14.4 137 129-291 127-288 (368)
147 cd00405 PRAI Phosphoribosylant 98.2 0.00028 6E-09 62.8 18.8 183 94-308 8-201 (203)
148 PRK05096 guanosine 5'-monophos 98.2 4.2E-05 9.1E-10 72.9 14.1 167 97-291 61-245 (346)
149 PRK08005 epimerase; Validated 98.2 0.00053 1.2E-08 61.7 20.5 178 97-305 17-205 (210)
150 PF03060 NMO: Nitronate monoox 98.2 2.5E-05 5.5E-10 74.9 12.7 74 216-291 146-222 (330)
151 TIGR01305 GMP_reduct_1 guanosi 98.2 3.5E-05 7.5E-10 73.4 13.2 177 97-303 60-254 (343)
152 COG1411 Uncharacterized protei 98.1 1.7E-05 3.8E-10 69.8 9.8 99 54-173 118-221 (229)
153 cd02930 DCR_FMN 2,4-dienoyl-Co 98.1 2.8E-05 6E-10 75.3 12.3 149 146-305 142-321 (353)
154 TIGR01304 IMP_DH_rel_2 IMP deh 98.1 3.1E-05 6.7E-10 75.3 12.4 156 93-291 56-219 (369)
155 PRK08255 salicylyl-CoA 5-hydro 98.1 2.4E-05 5.2E-10 83.0 12.7 147 147-306 557-734 (765)
156 PRK02615 thiamine-phosphate py 98.1 0.00028 6E-09 68.2 18.8 164 94-296 158-328 (347)
157 PLN02826 dihydroorotate dehydr 98.1 0.00011 2.4E-09 72.4 15.1 91 214-307 277-388 (409)
158 COG0269 SgbH 3-hexulose-6-phos 98.0 0.00014 3.1E-09 65.1 13.9 142 134-305 57-206 (217)
159 TIGR02708 L_lactate_ox L-lacta 98.0 5.1E-05 1.1E-09 73.6 11.9 74 216-291 239-315 (367)
160 CHL00200 trpA tryptophan synth 98.0 7.1E-05 1.5E-09 69.7 12.3 134 132-291 90-234 (263)
161 PRK13111 trpA tryptophan synth 98.0 9.8E-05 2.1E-09 68.5 13.3 133 132-291 88-231 (258)
162 cd04735 OYE_like_4_FMN Old yel 98.0 3.3E-05 7.1E-10 74.8 10.4 148 146-304 149-327 (353)
163 PRK08091 ribulose-phosphate 3- 98.0 0.0018 3.9E-08 59.0 20.9 179 97-306 29-222 (228)
164 PRK06512 thiamine-phosphate py 98.0 0.0011 2.4E-08 60.1 19.5 165 94-296 27-198 (221)
165 PRK13307 bifunctional formalde 98.0 0.00016 3.4E-09 70.8 14.8 141 134-305 227-372 (391)
166 TIGR01304 IMP_DH_rel_2 IMP deh 98.0 0.00017 3.6E-09 70.2 14.9 120 145-291 146-287 (369)
167 COG0352 ThiE Thiamine monophos 98.0 0.00058 1.3E-08 61.5 17.2 174 96-309 24-205 (211)
168 PLN02591 tryptophan synthase 98.0 0.00011 2.3E-09 68.0 12.5 134 132-291 77-221 (250)
169 PRK08649 inosine 5-monophospha 98.0 8.8E-05 1.9E-09 72.2 12.5 99 172-290 117-217 (368)
170 PRK09427 bifunctional indole-3 98.0 0.00048 1E-08 68.8 17.5 169 93-299 70-247 (454)
171 cd02929 TMADH_HD_FMN Trimethyl 98.0 0.00012 2.5E-09 71.5 12.7 148 146-305 155-334 (370)
172 cd04747 OYE_like_5_FMN Old yel 98.0 0.00019 4E-09 69.8 14.1 151 147-304 150-342 (361)
173 PRK06552 keto-hydroxyglutarate 97.9 0.0018 3.8E-08 58.5 19.3 171 93-308 25-203 (213)
174 PRK05718 keto-hydroxyglutarate 97.9 0.0011 2.3E-08 59.9 17.4 172 93-309 27-206 (212)
175 KOG2334 tRNA-dihydrouridine sy 97.9 4.3E-05 9.2E-10 74.1 8.2 115 160-291 126-245 (477)
176 PF05690 ThiG: Thiazole biosyn 97.9 6.4E-05 1.4E-09 68.1 8.9 84 216-302 134-218 (247)
177 CHL00162 thiG thiamin biosynth 97.9 7.8E-05 1.7E-09 68.3 9.5 78 217-297 149-227 (267)
178 PF03932 CutC: CutC family; I 97.9 0.0013 2.7E-08 58.9 17.0 164 94-279 9-192 (201)
179 cd00958 DhnA Class I fructose- 97.9 0.00054 1.2E-08 62.2 14.8 188 92-305 20-228 (235)
180 COG0434 SgcQ Predicted TIM-bar 97.9 0.0013 2.8E-08 59.8 16.7 191 96-311 37-258 (263)
181 cd04737 LOX_like_FMN L-Lactate 97.9 0.00011 2.3E-09 71.1 10.6 72 216-291 232-308 (351)
182 TIGR01036 pyrD_sub2 dihydrooro 97.9 0.00013 2.8E-09 70.2 11.0 89 214-305 225-333 (335)
183 COG2070 Dioxygenases related t 97.8 0.0001 2.2E-09 71.0 9.8 74 216-291 137-216 (336)
184 PRK02506 dihydroorotate dehydr 97.8 0.00048 1E-08 65.6 14.3 154 133-305 92-286 (310)
185 cd00945 Aldolase_Class_I Class 97.8 0.0011 2.4E-08 57.6 15.6 169 94-288 14-201 (201)
186 PRK14057 epimerase; Provisiona 97.8 0.0046 1E-07 57.2 20.1 183 97-308 36-238 (254)
187 PRK09722 allulose-6-phosphate 97.8 0.0073 1.6E-07 55.1 21.0 180 98-308 20-216 (229)
188 TIGR01182 eda Entner-Doudoroff 97.8 0.0028 6.1E-08 56.8 17.9 171 94-309 21-199 (204)
189 PLN02495 oxidoreductase, actin 97.8 0.0011 2.4E-08 64.9 16.2 158 131-305 110-315 (385)
190 PTZ00170 D-ribulose-5-phosphat 97.7 0.0021 4.4E-08 58.6 16.5 185 93-306 16-216 (228)
191 COG0036 Rpe Pentose-5-phosphat 97.7 0.0093 2E-07 53.8 20.0 183 95-308 18-214 (220)
192 cd04736 MDH_FMN Mandelate dehy 97.7 0.0004 8.6E-09 67.4 12.0 72 216-291 247-321 (361)
193 PRK03512 thiamine-phosphate py 97.7 0.0047 1E-07 55.6 18.1 170 96-305 22-200 (211)
194 PRK10605 N-ethylmaleimide redu 97.7 0.00061 1.3E-08 66.3 13.1 148 146-304 164-335 (362)
195 cd03319 L-Ala-DL-Glu_epimerase 97.7 0.00094 2E-08 63.4 14.1 138 145-311 140-279 (316)
196 PF01884 PcrB: PcrB family; I 97.7 4.1E-05 8.8E-10 69.6 4.5 75 226-307 153-227 (230)
197 PF00290 Trp_syntA: Tryptophan 97.7 0.00074 1.6E-08 62.7 12.7 133 132-291 86-229 (259)
198 PRK11572 copper homeostasis pr 97.7 0.007 1.5E-07 55.7 18.6 162 94-279 10-191 (248)
199 PLN02898 HMP-P kinase/thiamin- 97.7 0.004 8.6E-08 63.1 18.9 160 94-291 308-478 (502)
200 PF00834 Ribul_P_3_epim: Ribul 97.7 0.0006 1.3E-08 61.0 11.3 172 94-295 13-199 (201)
201 cd04743 NPD_PKS 2-Nitropropane 97.6 0.0027 6E-08 60.6 16.3 161 97-291 18-205 (320)
202 COG0159 TrpA Tryptophan syntha 97.6 0.00083 1.8E-08 62.3 12.3 133 132-291 93-236 (265)
203 cd04728 ThiG Thiazole synthase 97.6 0.00041 8.9E-09 63.4 9.4 77 88-166 128-209 (248)
204 KOG2550 IMP dehydrogenase/GMP 97.6 0.00065 1.4E-08 65.9 10.9 134 134-291 238-386 (503)
205 cd04740 DHOD_1B_like Dihydroor 97.6 0.00041 8.9E-09 65.2 9.3 85 94-182 167-277 (296)
206 PRK08999 hypothetical protein; 97.5 0.0046 1E-07 58.5 16.3 157 97-291 148-311 (312)
207 cd02801 DUS_like_FMN Dihydrour 97.5 0.0002 4.4E-09 64.5 6.8 84 94-181 139-229 (231)
208 cd02811 IDI-2_FMN Isopentenyl- 97.5 0.00047 1E-08 66.1 9.6 72 216-291 192-287 (326)
209 PRK00208 thiG thiazole synthas 97.5 0.00056 1.2E-08 62.6 9.4 74 89-166 129-209 (250)
210 PRK11840 bifunctional sulfur c 97.5 0.001 2.2E-08 63.2 11.2 81 216-300 208-290 (326)
211 COG2022 ThiG Uncharacterized e 97.5 0.0028 6E-08 57.4 12.9 83 218-303 143-226 (262)
212 PRK07259 dihydroorotate dehydr 97.5 0.00048 1E-08 65.0 8.6 86 93-182 169-280 (301)
213 TIGR02151 IPP_isom_2 isopenten 97.5 0.00048 1E-08 66.2 8.6 72 216-291 193-286 (333)
214 PRK13957 indole-3-glycerol-pho 97.4 0.002 4.3E-08 59.4 11.7 111 184-308 38-148 (247)
215 TIGR01037 pyrD_sub1_fam dihydr 97.4 0.00049 1.1E-08 64.9 8.0 86 93-182 169-280 (300)
216 PF01180 DHO_dh: Dihydroorotat 97.4 0.00025 5.4E-09 66.8 5.6 162 133-309 96-293 (295)
217 PLN02535 glycolate oxidase 97.4 0.001 2.2E-08 64.7 9.9 71 217-291 235-310 (364)
218 PRK06015 keto-hydroxyglutarate 97.4 0.026 5.6E-07 50.5 18.2 171 94-309 17-195 (201)
219 cd03315 MLE_like Muconate lact 97.4 0.0043 9.2E-08 57.4 13.6 139 145-311 91-231 (265)
220 PRK10415 tRNA-dihydrouridine s 97.4 0.00082 1.8E-08 64.3 8.9 85 94-182 150-241 (321)
221 PRK07998 gatY putative fructos 97.4 0.0071 1.5E-07 56.8 14.9 156 127-291 68-232 (283)
222 cd02911 arch_FMN Archeal FMN-b 97.3 0.00079 1.7E-08 61.6 8.0 78 94-179 153-232 (233)
223 PRK07114 keto-hydroxyglutarate 97.3 0.016 3.4E-07 52.7 16.3 171 94-309 28-211 (222)
224 PRK08185 hypothetical protein; 97.3 0.017 3.6E-07 54.4 16.6 151 129-291 64-231 (283)
225 PRK05848 nicotinate-nucleotide 97.3 0.0027 5.9E-08 59.4 10.9 90 172-297 169-264 (273)
226 cd03332 LMO_FMN L-Lactate 2-mo 97.2 0.0025 5.5E-08 62.3 10.4 72 216-291 264-340 (383)
227 cd02803 OYE_like_FMN_family Ol 97.2 0.00077 1.7E-08 64.2 6.7 83 94-180 229-326 (327)
228 TIGR00262 trpA tryptophan synt 97.2 0.0017 3.6E-08 60.3 8.7 74 93-166 150-232 (256)
229 PRK07226 fructose-bisphosphate 97.2 0.0081 1.8E-07 55.9 13.3 69 217-297 164-238 (267)
230 cd00331 IGPS Indole-3-glycerol 97.2 0.003 6.5E-08 56.7 10.1 75 212-291 30-104 (217)
231 PF04481 DUF561: Protein of un 97.2 0.031 6.7E-07 50.3 15.9 170 98-292 29-218 (242)
232 TIGR00737 nifR3_yhdG putative 97.2 0.0017 3.6E-08 62.0 8.6 85 94-182 148-239 (319)
233 TIGR01859 fruc_bis_ald_ fructo 97.2 0.012 2.6E-07 55.4 14.0 152 128-291 68-233 (282)
234 TIGR01949 AroFGH_arch predicte 97.1 0.0074 1.6E-07 55.8 12.4 185 92-305 35-241 (258)
235 cd02922 FCB2_FMN Flavocytochro 97.1 0.0051 1.1E-07 59.4 11.6 76 216-297 224-307 (344)
236 PRK05437 isopentenyl pyrophosp 97.1 0.0026 5.7E-08 61.7 9.6 72 216-291 200-293 (352)
237 CHL00162 thiG thiamin biosynth 97.1 0.0036 7.9E-08 57.5 9.7 76 88-167 142-224 (267)
238 PF03437 BtpA: BtpA family; I 97.1 0.0039 8.4E-08 57.7 9.9 89 93-182 158-252 (254)
239 cd02940 DHPD_FMN Dihydropyrimi 97.1 0.002 4.2E-08 61.0 7.9 86 93-181 180-298 (299)
240 TIGR00259 thylakoid_BtpA membr 97.1 0.0057 1.2E-07 56.7 10.6 89 93-182 157-252 (257)
241 PF01081 Aldolase: KDPG and KH 97.0 0.027 5.8E-07 50.2 14.5 159 93-296 20-182 (196)
242 PRK01130 N-acetylmannosamine-6 97.0 0.0046 1E-07 55.7 9.8 84 94-182 128-219 (221)
243 CHL00200 trpA tryptophan synth 97.0 0.0016 3.6E-08 60.6 6.8 74 93-166 154-236 (263)
244 PRK12290 thiE thiamine-phospha 97.0 0.063 1.4E-06 53.3 18.1 169 97-305 221-406 (437)
245 PRK08883 ribulose-phosphate 3- 97.0 0.0026 5.5E-08 57.7 7.9 86 94-181 117-214 (220)
246 COG1902 NemA NADH:flavin oxido 97.0 0.0064 1.4E-07 59.2 11.1 146 147-303 155-331 (363)
247 KOG3111 D-ribulose-5-phosphate 97.0 0.17 3.7E-06 44.8 18.6 185 94-309 18-215 (224)
248 cd04742 NPD_FabD 2-Nitropropan 97.0 0.0026 5.7E-08 62.8 8.4 73 216-291 166-251 (418)
249 TIGR00736 nifR3_rel_arch TIM-b 97.0 0.0029 6.2E-08 57.8 8.0 74 94-167 149-226 (231)
250 PRK07709 fructose-bisphosphate 97.0 0.024 5.3E-07 53.4 14.1 146 134-291 80-236 (285)
251 PRK06801 hypothetical protein; 97.0 0.036 7.8E-07 52.3 15.3 153 130-291 71-236 (286)
252 PRK11197 lldD L-lactate dehydr 97.0 0.0061 1.3E-07 59.6 10.4 72 216-291 256-332 (381)
253 cd04738 DHOD_2_like Dihydrooro 96.9 0.0011 2.3E-08 63.7 5.0 85 94-181 217-326 (327)
254 cd04739 DHOD_like Dihydroorota 96.9 0.0038 8.2E-08 59.8 8.4 87 93-182 175-284 (325)
255 PLN02979 glycolate oxidase 96.9 0.0064 1.4E-07 59.0 9.9 74 216-291 234-310 (366)
256 KOG0623 Glutamine amidotransfe 96.9 0.0035 7.7E-08 59.6 7.8 104 185-290 230-358 (541)
257 cd02810 DHOD_DHPD_FMN Dihydroo 96.9 0.002 4.3E-08 60.3 6.2 84 94-180 177-288 (289)
258 KOG4201 Anthranilate synthase 96.9 0.017 3.8E-07 51.8 11.7 175 92-297 90-273 (289)
259 cd04726 KGPDC_HPS 3-Keto-L-gul 96.9 0.0058 1.2E-07 53.9 8.8 74 92-167 113-192 (202)
260 PRK09517 multifunctional thiam 96.8 0.096 2.1E-06 55.8 18.9 163 95-296 21-200 (755)
261 COG1646 Predicted phosphate-bi 96.8 0.004 8.6E-08 56.5 7.2 65 235-308 170-235 (240)
262 PRK08610 fructose-bisphosphate 96.8 0.038 8.3E-07 52.1 14.0 146 134-291 80-236 (286)
263 PRK13111 trpA tryptophan synth 96.8 0.0039 8.4E-08 57.9 7.2 74 92-166 151-233 (258)
264 cd00377 ICL_PEPM Members of th 96.8 0.04 8.8E-07 50.6 13.7 176 94-291 18-229 (243)
265 PRK12738 kbaY tagatose-bisphos 96.8 0.077 1.7E-06 50.0 15.7 154 129-291 70-235 (286)
266 TIGR02814 pfaD_fam PfaD family 96.7 0.0063 1.4E-07 60.6 8.6 72 217-291 172-256 (444)
267 PLN02334 ribulose-phosphate 3- 96.7 0.0089 1.9E-07 54.3 8.9 87 94-182 126-222 (229)
268 PRK05286 dihydroorotate dehydr 96.7 0.0013 2.7E-08 63.6 3.5 86 94-182 226-336 (344)
269 cd04724 Tryptophan_synthase_al 96.7 0.0051 1.1E-07 56.5 7.4 73 93-166 139-220 (242)
270 COG0434 SgcQ Predicted TIM-bar 96.7 0.023 5E-07 51.8 11.2 88 94-182 164-257 (263)
271 PRK07565 dihydroorotate dehydr 96.7 0.0067 1.5E-07 58.3 8.3 86 94-182 178-286 (334)
272 PLN02591 tryptophan synthase 96.7 0.0053 1.1E-07 56.8 7.2 73 94-166 142-223 (250)
273 PRK06806 fructose-bisphosphate 96.7 0.063 1.4E-06 50.5 14.5 154 126-295 67-235 (281)
274 PF00724 Oxidored_FMN: NADH:fl 96.7 0.005 1.1E-07 59.3 7.2 145 147-303 155-334 (341)
275 cd00947 TBP_aldolase_IIB Tagat 96.7 0.054 1.2E-06 50.8 13.8 153 130-291 66-229 (276)
276 PF01070 FMN_dh: FMN-dependent 96.6 0.016 3.5E-07 56.2 10.7 72 216-291 236-312 (356)
277 cd03316 MR_like Mandelate race 96.6 0.03 6.6E-07 53.9 12.5 138 145-310 145-290 (357)
278 PF05690 ThiG: Thiazole biosyn 96.6 0.0084 1.8E-07 54.6 7.8 72 93-167 132-210 (247)
279 TIGR01858 tag_bisphos_ald clas 96.6 0.098 2.1E-06 49.2 15.3 153 130-291 69-233 (282)
280 PLN02826 dihydroorotate dehydr 96.6 0.0065 1.4E-07 60.0 7.8 86 94-182 277-388 (409)
281 PRK08091 ribulose-phosphate 3- 96.6 0.011 2.4E-07 53.8 8.7 35 133-167 179-213 (228)
282 PRK11320 prpB 2-methylisocitra 96.6 0.051 1.1E-06 51.4 13.1 178 94-291 26-237 (292)
283 PRK09195 gatY tagatose-bisphos 96.6 0.11 2.4E-06 49.0 15.2 155 128-291 69-235 (284)
284 cd00429 RPE Ribulose-5-phospha 96.5 0.009 2E-07 52.8 7.6 35 133-167 166-200 (211)
285 cd04730 NPD_like 2-Nitropropan 96.5 0.018 4E-07 51.9 9.8 73 95-167 111-191 (236)
286 PLN02493 probable peroxisomal 96.5 0.0082 1.8E-07 58.4 7.8 72 216-291 235-311 (367)
287 TIGR00167 cbbA ketose-bisphosp 96.5 0.069 1.5E-06 50.4 13.7 150 133-291 77-239 (288)
288 PRK07084 fructose-bisphosphate 96.5 0.12 2.6E-06 49.5 15.3 147 133-291 85-271 (321)
289 KOG1606 Stationary phase-induc 96.5 0.0082 1.8E-07 53.7 6.8 60 245-308 195-256 (296)
290 cd04729 NanE N-acetylmannosami 96.5 0.012 2.5E-07 53.0 7.9 72 94-166 132-211 (219)
291 PRK12857 fructose-1,6-bisphosp 96.4 0.13 2.9E-06 48.4 15.1 154 129-291 70-235 (284)
292 COG2022 ThiG Uncharacterized e 96.4 0.012 2.6E-07 53.4 7.6 76 87-166 134-216 (262)
293 PRK11815 tRNA-dihydrouridine s 96.4 0.01 2.2E-07 57.1 7.6 84 94-182 152-250 (333)
294 cd02809 alpha_hydroxyacid_oxid 96.4 0.0093 2E-07 56.4 7.3 70 97-166 184-261 (299)
295 PRK07315 fructose-bisphosphate 96.4 0.073 1.6E-06 50.4 13.2 147 134-291 80-235 (293)
296 COG0036 Rpe Pentose-5-phosphat 96.4 0.018 4E-07 51.9 8.5 74 93-167 119-203 (220)
297 PF01791 DeoC: DeoC/LacD famil 96.3 0.018 3.8E-07 52.5 8.4 71 215-291 148-233 (236)
298 PRK05835 fructose-bisphosphate 96.3 0.1 2.2E-06 49.6 13.6 149 134-291 77-258 (307)
299 cd01573 modD_like ModD; Quinol 96.3 0.025 5.5E-07 52.9 9.4 72 217-299 194-267 (272)
300 PRK08745 ribulose-phosphate 3- 96.3 0.026 5.6E-07 51.4 8.9 35 133-167 171-205 (223)
301 TIGR01163 rpe ribulose-phospha 96.3 0.013 2.8E-07 51.8 7.0 34 134-167 166-199 (210)
302 PRK08005 epimerase; Validated 96.3 0.022 4.9E-07 51.3 8.5 73 94-167 117-197 (210)
303 PRK14057 epimerase; Provisiona 96.3 0.03 6.6E-07 51.8 9.4 73 94-167 143-227 (254)
304 PRK10550 tRNA-dihydrouridine s 96.2 0.015 3.1E-07 55.6 7.5 83 94-180 149-239 (312)
305 TIGR03151 enACPred_II putative 96.2 0.03 6.5E-07 53.3 9.6 71 97-167 120-196 (307)
306 PRK00230 orotidine 5'-phosphat 96.2 0.11 2.3E-06 47.4 12.8 189 94-306 13-223 (230)
307 PRK12737 gatY tagatose-bisphos 96.2 0.25 5.3E-06 46.6 15.5 152 128-291 69-235 (284)
308 cd02932 OYE_YqiM_FMN Old yello 96.2 0.011 2.5E-07 56.7 6.6 83 94-180 242-335 (336)
309 PRK05581 ribulose-phosphate 3- 96.2 0.021 4.6E-07 50.9 7.8 34 134-167 171-204 (220)
310 PRK08072 nicotinate-nucleotide 96.1 0.065 1.4E-06 50.3 11.2 66 217-296 199-266 (277)
311 PRK13125 trpA tryptophan synth 96.1 0.031 6.6E-07 51.3 8.9 34 133-166 185-219 (244)
312 TIGR01521 FruBisAldo_II_B fruc 96.1 0.12 2.6E-06 49.9 13.2 150 134-291 76-278 (347)
313 PF01116 F_bP_aldolase: Fructo 96.1 0.2 4.2E-06 47.4 14.4 151 129-291 69-238 (287)
314 COG0214 SNZ1 Pyridoxine biosyn 96.1 0.018 3.9E-07 52.3 7.0 187 94-297 29-246 (296)
315 PRK08318 dihydropyrimidine deh 96.1 0.022 4.8E-07 56.4 8.3 86 93-181 180-299 (420)
316 cd04737 LOX_like_FMN L-Lactate 96.1 0.019 4.1E-07 55.7 7.5 71 97-167 233-311 (351)
317 PRK00507 deoxyribose-phosphate 96.1 0.11 2.4E-06 47.1 12.1 128 145-291 78-209 (221)
318 cd01572 QPRTase Quinolinate ph 96.1 0.065 1.4E-06 50.0 10.9 66 217-296 193-260 (268)
319 PRK11840 bifunctional sulfur c 96.1 0.036 7.8E-07 52.9 9.1 76 88-167 202-284 (326)
320 cd04741 DHOD_1A_like Dihydroor 96.0 0.024 5.2E-07 53.6 7.9 46 133-182 243-290 (294)
321 PRK13399 fructose-1,6-bisphosp 96.0 0.12 2.7E-06 49.9 12.7 150 134-291 76-280 (347)
322 PRK07428 nicotinate-nucleotide 96.0 0.078 1.7E-06 50.1 11.0 68 216-297 206-278 (288)
323 PRK07028 bifunctional hexulose 96.0 0.042 9.2E-07 54.6 9.8 75 93-167 118-196 (430)
324 PRK05742 nicotinate-nucleotide 96.0 0.081 1.8E-06 49.7 10.9 68 216-297 199-268 (277)
325 cd02808 GltS_FMN Glutamate syn 96.0 0.038 8.2E-07 54.4 9.1 75 214-291 226-317 (392)
326 PLN02535 glycolate oxidase 95.9 0.023 5E-07 55.3 7.4 73 94-167 233-313 (364)
327 PRK06852 aldolase; Validated 95.9 0.14 3E-06 48.7 12.4 77 216-297 191-274 (304)
328 TIGR01036 pyrD_sub2 dihydrooro 95.9 0.0076 1.6E-07 58.1 4.0 85 94-181 225-334 (335)
329 cd03321 mandelate_racemase Man 95.9 0.088 1.9E-06 50.9 11.4 151 134-311 131-288 (355)
330 PRK13813 orotidine 5'-phosphat 95.9 0.16 3.5E-06 45.3 12.3 134 147-307 73-208 (215)
331 cd00564 TMP_TenI Thiamine mono 95.9 0.034 7.3E-07 48.1 7.7 73 94-167 104-184 (196)
332 PRK00043 thiE thiamine-phospha 95.9 0.055 1.2E-06 47.9 9.1 73 94-167 113-194 (212)
333 cd04734 OYE_like_3_FMN Old yel 95.9 0.017 3.6E-07 55.9 6.2 93 94-191 229-340 (343)
334 PLN02411 12-oxophytodienoate r 95.8 0.065 1.4E-06 52.7 10.2 53 247-303 303-355 (391)
335 TIGR00078 nadC nicotinate-nucl 95.8 0.12 2.5E-06 48.3 11.3 63 217-291 189-253 (265)
336 PRK04302 triosephosphate isome 95.8 0.015 3.4E-07 52.5 5.2 43 125-167 163-208 (223)
337 TIGR02317 prpB methylisocitrat 95.7 0.22 4.8E-06 47.0 12.9 178 94-291 22-232 (285)
338 cd02922 FCB2_FMN Flavocytochro 95.6 0.041 9E-07 53.2 7.7 71 97-167 225-306 (344)
339 PRK13307 bifunctional formalde 95.6 0.047 1E-06 53.7 8.1 73 93-167 287-364 (391)
340 PRK09196 fructose-1,6-bisphosp 95.5 0.26 5.6E-06 47.7 12.6 150 134-291 78-280 (347)
341 TIGR02151 IPP_isom_2 isopenten 95.5 0.059 1.3E-06 51.8 8.2 69 95-166 192-288 (333)
342 cd02930 DCR_FMN 2,4-dienoyl-Co 95.5 0.019 4E-07 55.6 4.7 95 94-193 225-333 (353)
343 TIGR02319 CPEP_Pphonmut carbox 95.4 0.47 1E-05 45.0 13.9 174 94-291 25-236 (294)
344 PRK14567 triosephosphate isome 95.4 0.19 4.1E-06 46.6 10.9 147 146-309 77-249 (253)
345 TIGR00742 yjbN tRNA dihydrouri 95.4 0.076 1.7E-06 50.8 8.7 81 94-182 142-240 (318)
346 PRK10605 N-ethylmaleimide redu 95.4 0.061 1.3E-06 52.4 8.0 83 95-181 251-337 (362)
347 cd04736 MDH_FMN Mandelate dehy 95.4 0.031 6.7E-07 54.4 5.9 72 94-166 246-323 (361)
348 COG3142 CutC Uncharacterized p 95.3 1.1 2.3E-05 40.9 15.1 161 94-277 10-190 (241)
349 cd02933 OYE_like_FMN Old yello 95.3 0.055 1.2E-06 52.2 7.4 82 95-180 243-329 (338)
350 TIGR03128 RuMP_HxlA 3-hexulose 95.3 0.12 2.5E-06 45.8 9.0 75 93-167 113-192 (206)
351 cd04733 OYE_like_2_FMN Old yel 95.2 0.062 1.3E-06 51.7 7.5 83 94-180 237-337 (338)
352 cd04735 OYE_like_4_FMN Old yel 95.2 0.017 3.7E-07 55.9 3.6 95 94-193 236-340 (353)
353 COG0167 PyrD Dihydroorotate de 95.2 0.072 1.6E-06 50.7 7.7 88 92-182 172-288 (310)
354 PRK13523 NADPH dehydrogenase N 95.2 0.039 8.4E-07 53.2 6.0 84 93-183 227-323 (337)
355 PLN02274 inosine-5'-monophosph 95.2 0.058 1.3E-06 54.8 7.5 71 97-167 301-386 (505)
356 PRK09722 allulose-6-phosphate 95.2 0.063 1.4E-06 49.0 7.1 34 133-166 169-203 (229)
357 PF04131 NanE: Putative N-acet 95.2 0.036 7.7E-07 49.0 5.2 49 125-178 136-185 (192)
358 PRK06843 inosine 5-monophospha 95.2 0.076 1.6E-06 52.4 8.0 71 97-167 206-291 (404)
359 PRK15452 putative protease; Pr 95.2 0.43 9.4E-06 47.8 13.5 133 144-309 13-155 (443)
360 cd00959 DeoC 2-deoxyribose-5-p 95.1 0.19 4.1E-06 44.8 9.9 116 145-279 73-196 (203)
361 cd02931 ER_like_FMN Enoate red 95.1 0.063 1.4E-06 52.6 7.4 92 94-193 253-362 (382)
362 PRK05096 guanosine 5'-monophos 95.1 0.034 7.4E-07 53.3 5.2 71 97-167 163-248 (346)
363 TIGR01305 GMP_reduct_1 guanosi 95.1 0.073 1.6E-06 51.1 7.5 72 94-166 160-246 (343)
364 TIGR02708 L_lactate_ox L-lacta 95.1 0.059 1.3E-06 52.6 7.0 70 97-166 240-317 (367)
365 COG2513 PrpB PEP phosphonomuta 95.1 0.54 1.2E-05 44.2 13.0 175 94-291 27-237 (289)
366 PTZ00333 triosephosphate isome 95.1 0.24 5.3E-06 45.9 10.7 149 146-309 81-253 (255)
367 PTZ00170 D-ribulose-5-phosphat 95.1 0.05 1.1E-06 49.5 6.0 35 133-167 173-207 (228)
368 PRK05458 guanosine 5'-monophos 95.0 0.35 7.7E-06 46.4 11.9 96 172-288 71-168 (326)
369 PRK09250 fructose-bisphosphate 95.0 0.22 4.7E-06 48.1 10.4 150 145-309 150-335 (348)
370 cd03329 MR_like_4 Mandelate ra 95.0 0.34 7.4E-06 47.1 11.9 139 145-311 149-292 (368)
371 cd01568 QPRTase_NadC Quinolina 95.0 0.2 4.2E-06 46.9 9.8 66 217-296 192-261 (269)
372 PF00290 Trp_syntA: Tryptophan 95.0 0.045 9.7E-07 50.9 5.4 72 94-166 151-231 (259)
373 KOG0538 Glycolate oxidase [Ene 94.9 0.1 2.2E-06 49.3 7.7 92 215-309 233-331 (363)
374 TIGR01306 GMP_reduct_2 guanosi 94.9 0.26 5.7E-06 47.2 10.7 69 215-288 95-165 (321)
375 PF00834 Ribul_P_3_epim: Ribul 94.9 0.018 3.9E-07 51.5 2.7 36 132-167 165-200 (201)
376 KOG1436 Dihydroorotate dehydro 94.9 0.069 1.5E-06 50.6 6.4 90 214-306 267-377 (398)
377 PRK05848 nicotinate-nucleotide 94.9 0.14 3.1E-06 47.9 8.6 66 96-166 192-262 (273)
378 COG1304 idi Isopentenyl diphos 94.8 0.054 1.2E-06 52.7 5.8 75 215-291 228-305 (360)
379 PRK08227 autoinducer 2 aldolas 94.8 0.32 6.9E-06 45.4 10.6 68 218-297 163-235 (264)
380 cd00311 TIM Triosephosphate is 94.8 0.24 5.3E-06 45.6 9.7 132 146-291 76-231 (242)
381 TIGR02090 LEU1_arch isopropylm 94.8 3.8 8.1E-05 39.9 18.5 200 93-309 22-238 (363)
382 PRK05567 inosine 5'-monophosph 94.8 0.13 2.8E-06 52.0 8.6 70 97-166 281-365 (486)
383 cd02811 IDI-2_FMN Isopentenyl- 94.7 0.066 1.4E-06 51.4 6.1 71 96-166 192-289 (326)
384 PRK07807 inosine 5-monophospha 94.7 0.074 1.6E-06 53.7 6.6 71 97-167 280-365 (479)
385 COG0159 TrpA Tryptophan syntha 94.6 0.09 2E-06 48.9 6.5 74 93-167 157-239 (265)
386 cd04722 TIM_phosphate_binding 94.6 0.097 2.1E-06 44.6 6.5 33 130-162 167-200 (200)
387 PF03060 NMO: Nitronate monoox 94.6 0.25 5.4E-06 47.4 9.7 76 93-169 144-227 (330)
388 PF01207 Dus: Dihydrouridine s 94.5 0.035 7.5E-07 52.9 3.7 80 94-177 139-225 (309)
389 PRK00278 trpC indole-3-glycero 94.5 0.41 8.8E-06 44.5 10.7 97 205-310 63-159 (260)
390 PF00478 IMPDH: IMP dehydrogen 94.5 0.09 2E-06 50.9 6.5 71 97-167 161-246 (352)
391 KOG2550 IMP dehydrogenase/GMP 94.4 0.077 1.7E-06 51.9 5.7 70 97-166 304-388 (503)
392 cd00381 IMPDH IMPDH: The catal 94.4 0.14 3.1E-06 49.0 7.7 70 97-167 147-232 (325)
393 TIGR00381 cdhD CO dehydrogenas 94.3 0.68 1.5E-05 45.2 11.9 118 93-232 139-273 (389)
394 PRK07455 keto-hydroxyglutarate 94.2 0.24 5.2E-06 43.7 8.1 71 93-166 113-185 (187)
395 COG1902 NemA NADH:flavin oxido 94.2 0.084 1.8E-06 51.5 5.6 86 94-183 238-336 (363)
396 PRK09427 bifunctional indole-3 94.2 1.9 4.1E-05 43.4 15.3 154 122-309 148-304 (454)
397 KOG3111 D-ribulose-5-phosphate 94.1 0.3 6.6E-06 43.3 8.2 49 133-182 169-217 (224)
398 PRK09140 2-dehydro-3-deoxy-6-p 94.0 0.47 1E-05 42.6 9.7 71 93-166 112-184 (206)
399 PRK13397 3-deoxy-7-phosphohept 94.0 5.1 0.00011 37.1 17.7 194 88-309 24-246 (250)
400 cd00452 KDPG_aldolase KDPG and 94.0 1.5 3.4E-05 38.4 12.8 105 98-234 68-172 (190)
401 PRK07107 inosine 5-monophospha 94.0 0.13 2.7E-06 52.3 6.6 69 97-166 296-386 (502)
402 cd03328 MR_like_3 Mandelate ra 94.0 0.93 2E-05 43.8 12.3 139 145-311 144-286 (352)
403 COG0269 SgbH 3-hexulose-6-phos 93.9 0.22 4.8E-06 44.9 7.2 76 92-167 116-198 (217)
404 PRK08385 nicotinate-nucleotide 93.9 0.55 1.2E-05 44.1 10.2 68 215-296 191-265 (278)
405 PRK07695 transcriptional regul 93.9 0.34 7.4E-06 42.9 8.4 72 94-166 104-182 (201)
406 PRK05742 nicotinate-nucleotide 93.8 0.23 5.1E-06 46.6 7.6 66 96-166 199-266 (277)
407 COG0042 tRNA-dihydrouridine sy 93.8 0.19 4.1E-06 48.2 7.1 80 95-178 154-241 (323)
408 PF00697 PRAI: N-(5'phosphorib 93.8 0.54 1.2E-05 41.7 9.6 157 140-308 4-196 (197)
409 TIGR00126 deoC deoxyribose-pho 93.8 0.74 1.6E-05 41.5 10.5 117 145-279 74-197 (211)
410 cd03332 LMO_FMN L-Lactate 2-mo 93.8 0.13 2.8E-06 50.5 5.9 72 94-166 263-342 (383)
411 TIGR01334 modD putative molybd 93.6 0.56 1.2E-05 44.1 9.7 76 215-300 197-273 (277)
412 cd03318 MLE Muconate Lactonizi 93.6 1.5 3.3E-05 42.4 13.2 140 145-311 148-290 (365)
413 cd06556 ICL_KPHMT Members of t 93.6 1.8 3.9E-05 39.8 12.8 153 94-265 21-199 (240)
414 TIGR01302 IMP_dehydrog inosine 93.6 0.12 2.6E-06 51.7 5.5 39 129-167 323-362 (450)
415 cd04727 pdxS PdxS is a subunit 93.5 0.25 5.5E-06 46.2 7.2 46 121-166 182-230 (283)
416 COG0826 Collagenase and relate 93.5 2.1 4.6E-05 41.5 13.8 134 144-310 16-159 (347)
417 COG0191 Fba Fructose/tagatose 93.5 4.8 0.0001 37.9 15.6 153 127-291 69-237 (286)
418 PF01180 DHO_dh: Dihydroorotat 93.5 0.084 1.8E-06 49.7 4.1 85 95-182 178-291 (295)
419 cd01568 QPRTase_NadC Quinolina 93.5 0.28 6.1E-06 45.8 7.5 68 93-166 189-260 (269)
420 PRK04180 pyridoxal biosynthesi 93.5 0.27 5.8E-06 46.3 7.2 46 121-166 191-239 (293)
421 PF01070 FMN_dh: FMN-dependent 93.4 0.18 4E-06 49.0 6.4 72 94-166 235-314 (356)
422 PRK05437 isopentenyl pyrophosp 93.4 0.16 3.4E-06 49.3 5.9 72 96-167 200-296 (352)
423 cd03174 DRE_TIM_metallolyase D 93.4 6 0.00013 36.0 16.5 197 93-310 19-245 (265)
424 cd07948 DRE_TIM_HCS Saccharomy 93.4 3.7 8.1E-05 38.1 14.8 200 93-309 22-238 (262)
425 PRK07428 nicotinate-nucleotide 93.4 0.41 8.8E-06 45.2 8.4 67 94-166 205-276 (288)
426 PRK09197 fructose-bisphosphate 93.4 2.9 6.3E-05 40.5 14.3 153 130-291 89-282 (350)
427 TIGR01361 DAHP_synth_Bsub phos 93.3 5.4 0.00012 37.0 15.8 162 122-309 78-256 (260)
428 TIGR02320 PEP_mutase phosphoen 93.3 2.5 5.4E-05 39.9 13.7 144 127-291 72-243 (285)
429 PLN02858 fructose-bisphosphate 93.3 1.9 4.1E-05 49.2 14.9 153 130-291 1166-1334(1378)
430 TIGR01303 IMP_DH_rel_1 IMP deh 93.3 0.27 5.9E-06 49.6 7.5 68 97-167 278-363 (475)
431 PRK06806 fructose-bisphosphate 93.2 0.37 7.9E-06 45.4 7.9 75 93-167 153-236 (281)
432 TIGR00693 thiE thiamine-phosph 93.2 0.44 9.6E-06 41.7 8.0 73 94-167 105-186 (196)
433 PRK06552 keto-hydroxyglutarate 93.2 0.56 1.2E-05 42.3 8.7 70 93-166 117-188 (213)
434 cd00405 PRAI Phosphoribosylant 93.2 0.27 5.9E-06 43.6 6.6 50 132-181 151-202 (203)
435 PRK13306 ulaD 3-keto-L-gulonat 93.2 1.4 3E-05 39.8 11.3 127 149-305 75-205 (216)
436 PTZ00314 inosine-5'-monophosph 93.1 0.37 8E-06 48.9 8.3 69 214-288 241-310 (495)
437 PRK08385 nicotinate-nucleotide 93.1 0.41 8.8E-06 45.0 8.0 68 94-166 190-264 (278)
438 cd00958 DhnA Class I fructose- 93.0 0.54 1.2E-05 42.5 8.5 65 99-167 149-220 (235)
439 PRK12858 tagatose 1,6-diphosph 93.0 2.1 4.5E-05 41.4 12.9 89 215-309 186-301 (340)
440 PRK05718 keto-hydroxyglutarate 93.0 0.58 1.3E-05 42.2 8.5 87 93-182 116-207 (212)
441 cd03324 rTSbeta_L-fuconate_deh 93.0 1.8 3.9E-05 43.0 12.8 138 145-310 202-344 (415)
442 TIGR01334 modD putative molybd 93.0 0.52 1.1E-05 44.3 8.5 68 94-166 196-268 (277)
443 TIGR01425 SRP54_euk signal rec 92.9 4.3 9.4E-05 40.5 15.3 156 94-273 116-282 (429)
444 PRK04452 acetyl-CoA decarbonyl 92.9 0.68 1.5E-05 44.3 9.3 147 93-265 75-249 (319)
445 cd00453 FTBP_aldolase_II Fruct 92.9 4.6 9.9E-05 39.0 14.8 150 130-291 82-275 (340)
446 KOG0538 Glycolate oxidase [Ene 92.8 0.3 6.5E-06 46.3 6.5 66 99-164 237-310 (363)
447 COG0149 TpiA Triosephosphate i 92.8 1.6 3.4E-05 40.4 11.1 148 146-306 80-246 (251)
448 TIGR01859 fruc_bis_ald_ fructo 92.8 0.41 8.9E-06 45.0 7.5 74 93-166 153-235 (282)
449 TIGR02534 mucon_cyclo muconate 92.8 2.2 4.7E-05 41.4 12.8 137 146-309 148-287 (368)
450 cd04742 NPD_FabD 2-Nitropropan 92.7 0.56 1.2E-05 46.6 8.6 61 133-193 219-283 (418)
451 PRK06106 nicotinate-nucleotide 92.6 0.69 1.5E-05 43.5 8.7 65 97-166 205-271 (281)
452 PRK08195 4-hyroxy-2-oxovalerat 92.6 10 0.00023 36.5 17.9 194 93-310 25-244 (337)
453 PRK06559 nicotinate-nucleotide 92.5 0.76 1.6E-05 43.4 8.8 67 95-166 206-274 (290)
454 PRK08072 nicotinate-nucleotide 92.4 0.61 1.3E-05 43.8 8.1 67 94-166 197-265 (277)
455 cd01572 QPRTase Quinolinate ph 92.4 0.66 1.4E-05 43.3 8.3 67 94-166 191-259 (268)
456 PF01645 Glu_synthase: Conserv 92.4 1.8 3.9E-05 42.3 11.5 71 218-291 219-306 (368)
457 KOG4175 Tryptophan synthase al 92.3 1.3 2.9E-05 39.6 9.4 141 122-291 79-238 (268)
458 PRK02714 O-succinylbenzoate sy 92.2 3.1 6.6E-05 39.7 12.9 136 145-310 124-264 (320)
459 TIGR01182 eda Entner-Doudoroff 92.2 0.93 2E-05 40.7 8.7 86 94-182 110-200 (204)
460 PRK14017 galactonate dehydrata 92.2 2.8 6E-05 41.0 12.8 143 145-311 130-279 (382)
461 TIGR00078 nadC nicotinate-nucl 92.2 0.58 1.3E-05 43.6 7.6 66 94-165 187-254 (265)
462 cd02808 GltS_FMN Glutamate syn 92.1 0.37 7.9E-06 47.5 6.6 73 94-166 226-319 (392)
463 TIGR00959 ffh signal recogniti 92.1 5.2 0.00011 39.9 14.7 155 95-273 116-282 (428)
464 cd03327 MR_like_2 Mandelate ra 92.1 3.5 7.6E-05 39.6 13.2 154 133-310 108-272 (341)
465 PRK11858 aksA trans-homoaconit 92.1 13 0.00028 36.4 17.8 199 93-308 26-241 (378)
466 TIGR00064 ftsY signal recognit 92.1 7.7 0.00017 36.2 15.1 157 94-274 88-261 (272)
467 PF13714 PEP_mutase: Phosphoen 92.0 1.2 2.6E-05 40.8 9.5 175 94-291 18-222 (238)
468 PLN02979 glycolate oxidase 92.0 0.43 9.3E-06 46.5 6.7 70 97-166 235-312 (366)
469 cd03325 D-galactonate_dehydrat 92.0 2.4 5.2E-05 40.9 12.0 143 145-311 129-278 (352)
470 TIGR02660 nifV_homocitr homoci 92.0 13 0.00028 36.2 17.4 198 93-307 23-237 (365)
471 PF03932 CutC: CutC family; I 91.9 2.3 5.1E-05 38.0 10.9 108 144-262 10-119 (201)
472 cd07944 DRE_TIM_HOA_like 4-hyd 91.9 11 0.00023 35.1 17.2 196 93-309 20-237 (266)
473 PRK06978 nicotinate-nucleotide 91.9 1 2.2E-05 42.7 8.9 67 96-167 215-283 (294)
474 cd03326 MR_like_1 Mandelate ra 91.8 3.2 6.8E-05 40.8 12.7 140 145-311 166-311 (385)
475 COG3010 NanE Putative N-acetyl 91.8 0.69 1.5E-05 41.5 7.2 51 124-179 171-222 (229)
476 PRK12595 bifunctional 3-deoxy- 91.8 8.8 0.00019 37.4 15.7 162 122-309 171-349 (360)
477 cd03317 NAAAR N-acylamino acid 91.8 3.8 8.1E-05 39.4 13.1 136 145-310 143-278 (354)
478 PRK09016 quinolinate phosphori 91.8 0.96 2.1E-05 42.9 8.7 66 96-166 218-285 (296)
479 PRK06096 molybdenum transport 91.8 2.1 4.5E-05 40.4 10.9 71 215-299 198-273 (284)
480 TIGR00343 pyridoxal 5'-phospha 91.8 0.49 1.1E-05 44.4 6.6 46 121-166 185-233 (287)
481 COG0135 TrpF Phosphoribosylant 91.7 9.7 0.00021 34.3 18.9 184 93-309 10-204 (208)
482 TIGR01740 pyrF orotidine 5'-ph 91.7 4.2 9.1E-05 36.4 12.4 151 124-304 40-209 (213)
483 TIGR01949 AroFGH_arch predicte 91.6 1.1 2.4E-05 41.3 8.9 65 99-167 162-233 (258)
484 TIGR00419 tim triosephosphate 91.6 2.4 5.1E-05 38.1 10.6 117 146-291 73-201 (205)
485 PRK08255 salicylyl-CoA 5-hydro 91.6 0.55 1.2E-05 50.1 7.7 83 95-184 640-736 (765)
486 COG2070 Dioxygenases related t 91.6 0.25 5.5E-06 47.6 4.6 71 97-167 138-219 (336)
487 PRK11572 copper homeostasis pr 91.6 3 6.5E-05 38.6 11.4 100 144-254 11-111 (248)
488 PRK11197 lldD L-lactate dehydr 91.5 0.3 6.4E-06 47.9 5.1 70 97-166 257-334 (381)
489 PRK06256 biotin synthase; Vali 91.5 13 0.00028 35.4 16.9 183 95-291 96-303 (336)
490 PRK02261 methylaspartate mutas 91.5 2.7 5.9E-05 35.1 10.3 88 213-312 41-135 (137)
491 PRK13398 3-deoxy-7-phosphohept 91.5 12 0.00026 34.9 17.0 193 89-309 37-258 (266)
492 PRK06543 nicotinate-nucleotide 91.5 1.2 2.6E-05 42.0 8.9 65 97-166 204-270 (281)
493 PLN02429 triosephosphate isome 91.4 2.4 5.1E-05 40.6 10.9 147 146-307 139-308 (315)
494 TIGR01520 FruBisAldo_II_A fruc 91.3 4.4 9.5E-05 39.4 12.7 150 133-291 101-290 (357)
495 PRK00771 signal recognition pa 91.3 8.6 0.00019 38.5 15.2 154 95-272 112-274 (437)
496 PF01729 QRPTase_C: Quinolinat 91.3 0.48 1E-05 41.2 5.7 65 97-166 91-160 (169)
497 TIGR00640 acid_CoA_mut_C methy 91.3 1.8 3.9E-05 36.0 8.9 83 214-309 41-125 (132)
498 PLN02493 probable peroxisomal 91.3 0.56 1.2E-05 45.8 6.6 70 97-166 236-313 (367)
499 PRK06096 molybdenum transport 91.1 1.1 2.4E-05 42.2 8.3 66 95-165 198-268 (284)
500 TIGR02814 pfaD_fam PfaD family 91.1 1.4 3E-05 44.1 9.3 49 133-181 224-274 (444)
No 1
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=100.00 E-value=1.8e-59 Score=428.91 Aligned_cols=258 Identities=79% Similarity=1.272 Sum_probs=230.8
Q ss_pred cEEEEEEEeeCCeEEEEEcccccC---CCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH
Q 021156 54 VRFRPCIDIHKGKVKQIVGSTLQD---SKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH 130 (316)
Q Consensus 54 ~~iIP~IDi~~G~vvr~~~g~~~~---~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~ 130 (316)
.|+||||||++|+|||+++|++++ +...+....+.|.|..||+++|+.|.++|++++|+||||+....+..+++.+.
T Consensus 1 ~~~~PAIDl~~Gk~VrL~~G~~~~~~~~~~~~~~~~~~y~~~~dP~~~A~~~~~~Ga~~lHvVDLdgg~~~n~~~i~~i~ 80 (262)
T PLN02446 1 VRFRPCIDIHKGKVKQIVGSTLKDSKDGSEDGSELVTNFESDKSAAEFAEMYKRDGLTGGHVIMLGADDASLAAALEALR 80 (262)
T ss_pred CCeeeeEEeeCCEEEEeeCccccccccccccCCCceEEeCCCCCHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHH
Confidence 378999999999999999987642 11111122678865689999999999999999999999986555555555554
Q ss_pred hCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCccee
Q 021156 131 AYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKF 210 (316)
Q Consensus 131 ~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~ 210 (316)
++++|+|||||||++++++++++||++|||||.+++||+++|+++++++++||+++|++++|+|+++|+|.|+++||++.
T Consensus 81 ~~~~~vqvGGGIR~e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~ 160 (262)
T PLN02446 81 AYPGGLQVGGGVNSENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKF 160 (262)
T ss_pred hCCCCEEEeCCccHHHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCccc
Confidence 48899999999999999999999999999999999999999999999999999999999999975456689999999999
Q ss_pred cccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccc
Q 021156 211 SDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA 290 (316)
Q Consensus 211 ~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~A 290 (316)
++.++.+++.++.+.|++++++|+|++|||++|+|+++++++++.+++|||+|||++|++|+.++.++|.|+.++|+|+|
T Consensus 161 t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~G~d~el~~~l~~~~~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkA 240 (262)
T PLN02446 161 SDLAVDEETLEFLAAYCDEFLVHGVDVEGKRLGIDEELVALLGEHSPIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSA 240 (262)
T ss_pred CCCCHHHHHHHHHHhCCCEEEEEEEcCCCcccCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999998655899999999
Q ss_pred hhhccCcccHHHHHHHHHhhc
Q 021156 291 LDIFGGNLAYKDVVAWHAQQE 311 (316)
Q Consensus 291 l~~~~g~~~~~~~~~~~~~~~ 311 (316)
+.+|+|+++++|+++|.++++
T Consensus 241 l~~y~g~~~l~ea~~~~~~~~ 261 (262)
T PLN02446 241 LDIFGGNLPYDDVVAWHKQQK 261 (262)
T ss_pred HHHhCCCccHHHHHHHHhhcC
Confidence 988999999999999999764
No 2
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-56 Score=402.41 Aligned_cols=235 Identities=28% Similarity=0.418 Sum_probs=217.8
Q ss_pred ccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc---c-cHHHHHHH
Q 021156 53 AVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP---L-SKAAAIEA 128 (316)
Q Consensus 53 ~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~---~-~~~~i~~~ 128 (316)
+|.||||||+++|+|||+++|++. +++.| .+||.++|+.|.+.|++++|+||||++. + |.+.+.++
T Consensus 1 ~~~iiPAIDl~~G~~VRL~qGd~~--------~~~~y--~~~P~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i 70 (241)
T COG0106 1 MMIIIPAIDLKDGKVVRLVQGDYG--------KETVY--SDDPLEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEI 70 (241)
T ss_pred CceEEEeEEeeCCEEEEeecccCC--------cceEe--cCCHHHHHHHHHHcCCcEEEEeeccccccCCcccHHHHHHH
Confidence 589999999999999999988543 55777 4699999999999999999999999873 3 45667777
Q ss_pred HHhCCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCc
Q 021156 129 LHAYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRW 207 (316)
Q Consensus 129 v~~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw 207 (316)
++.+++|+|+|||||+ ++++.|+++|+++||+||.+++| |++++++.++|| ++|+++||+| +| .+.++||
T Consensus 71 ~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~~----p~~v~~~~~~~g-~rivv~lD~r--~g--~vav~GW 141 (241)
T COG0106 71 LEATDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVKN----PDLVKELCEEYG-DRIVVALDAR--DG--KVAVSGW 141 (241)
T ss_pred HHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceecC----HHHHHHHHHHcC-CcEEEEEEcc--CC--ccccccc
Confidence 7889999999999995 99999999999999999999998 999999999998 9999999998 67 5899999
Q ss_pred ceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEE
Q 021156 208 QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTV 287 (316)
Q Consensus 208 ~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gViv 287 (316)
++.+++++.++++++++.|+.+||+||+++|||++|+|+++++++++.+++|||+|||++|.+|++++.+.. |++|||+
T Consensus 142 ~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~~ipviaSGGv~s~~Di~~l~~~~-G~~GvIv 220 (241)
T COG0106 142 QEDSGVELEELAKRLEEVGLAHILYTDISRDGTLSGPNVDLVKELAEAVDIPVIASGGVSSLDDIKALKELS-GVEGVIV 220 (241)
T ss_pred cccccCCHHHHHHHHHhcCCCeEEEEecccccccCCCCHHHHHHHHHHhCcCEEEecCcCCHHHHHHHHhcC-CCcEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999993 3999999
Q ss_pred ccchhhccCcccHHHHHHHHHh
Q 021156 288 GSALDIFGGNLAYKDVVAWHAQ 309 (316)
Q Consensus 288 G~Al~~~~g~~~~~~~~~~~~~ 309 (316)
|||+ |+|.++++++++.++.
T Consensus 221 G~AL--y~g~~~l~ea~~~~~~ 240 (241)
T COG0106 221 GRAL--YEGKFTLEEALACVRN 240 (241)
T ss_pred ehHH--hcCCCCHHHHHHHHhc
Confidence 9999 9999999999887653
No 3
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=100.00 E-value=9e-53 Score=383.46 Aligned_cols=246 Identities=54% Similarity=0.984 Sum_probs=215.5
Q ss_pred EEEEEEEeeCCeEEEEEcccccCCCCCCCceee-ecCCccCH-HHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhC
Q 021156 55 RFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVT-NFESDKSA-AEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAY 132 (316)
Q Consensus 55 ~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~-~~~~~~~p-~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~ 132 (316)
++||||||++|+|||+++|++++. .+....+ .|. .|| +++|+.|+++|++++|+||| +.. |.+.+.++++.+
T Consensus 2 ~~iPAIDl~~Gk~VrL~qG~~~~~--~~~~~~~~~y~--~~pp~~~A~~~~~~Ga~~lHvVDL-g~~-n~~~i~~i~~~~ 75 (253)
T TIGR02129 2 KFRPCIDIHNGKVKQIVGGTLTSK--KGSVLKTNFVS--DKPSSYYAKLYKDDGVKGCHVIML-GPN-NDDAAKEALHAY 75 (253)
T ss_pred ceEeEEEeeCCEEEEeeCcCcccc--ccCCcceEEec--CCCHHHHHHHHHHcCCCEEEEEEC-CCC-cHHHHHHHHHhC
Confidence 689999999999999999865421 0011115 563 456 99999999999999999999 434 777777778888
Q ss_pred CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeec-CCeeEEEeCCcceec
Q 021156 133 PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKK-DGKYAIVTDRWQKFS 211 (316)
Q Consensus 133 ~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~-~g~~~v~~~gw~~~~ 211 (316)
++|+++|||||++++++++++||++|++||.+++++.++|++++++.++||+++|++++|+|.+ +|.|.|+++||++.+
T Consensus 76 ~~~v~vGGGIr~e~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~~~t 155 (253)
T TIGR02129 76 PGGLQVGGGINDTNAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQTIT 155 (253)
T ss_pred CCCEEEeCCcCHHHHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEECCCcccC
Confidence 9999999999999999999999999999999999877779999999999999999999999732 455799999999999
Q ss_pred ccCHH-HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccc
Q 021156 212 DVYLD-ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA 290 (316)
Q Consensus 212 ~~~~~-e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~A 290 (316)
++++. ++++++.+. ++++++|+|++|||++|||+++++++++.+++|||+|||++|++|+.++.+...++.++++|+|
T Consensus 156 ~~~~~~e~~~~~~~~-~~~il~TdI~rDGtl~G~dlel~~~l~~~~~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~A 234 (253)
T TIGR02129 156 DLELNAETLEELSKY-CDEFLIHAADVEGLCKGIDEELVSKLGEWSPIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSA 234 (253)
T ss_pred CCChHHHHHHHHHhh-CCEEEEeeecccCccccCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeeh
Confidence 99999 999999999 9999999999999999999999999999999999999999999999999766222788999999
Q ss_pred hhhccCcc-cHHHHHHHH
Q 021156 291 LDIFGGNL-AYKDVVAWH 307 (316)
Q Consensus 291 l~~~~g~~-~~~~~~~~~ 307 (316)
+|||.|++ .|.+.++|-
T Consensus 235 lf~f~~~~~~~~~~~~~~ 252 (253)
T TIGR02129 235 LDIFGGNLVKFTDCVAWN 252 (253)
T ss_pred HHHhCCCCccHHHHHhhh
Confidence 99999984 677877774
No 4
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=100.00 E-value=2.4e-52 Score=381.51 Aligned_cols=231 Identities=22% Similarity=0.287 Sum_probs=206.4
Q ss_pred cEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCC---cccHHHHHH-HH
Q 021156 54 VRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGAD---PLSKAAAIE-AL 129 (316)
Q Consensus 54 ~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~---~~~~~~i~~-~v 129 (316)
|+|||||||++|+|||+++|++.+ .+.| .+||+++|+.|+++|++++|++|||++ ...+..+++ +.
T Consensus 1 M~IIPaIDl~~Gk~Vrl~~G~~~~--------~~~~--~~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~ 70 (241)
T PRK14114 1 MLVVPAIDLFRGKVARMVKGKKEN--------TIFY--EKDPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLS 70 (241)
T ss_pred CEEEEEEEEECCEEEEeeccccCc--------ceEE--CCCHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHH
Confidence 689999999999999999997642 2445 369999999999999999999999975 234444444 44
Q ss_pred HhCCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcc
Q 021156 130 HAYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQ 208 (316)
Q Consensus 130 ~~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~ 208 (316)
+.+ .|+|+|||||+ +++++++++||++||+||++++| |++++++ ++|| +++++|+|+| +| .|.++||.
T Consensus 71 ~~~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~----p~~l~~~-~~~~-~~ivvslD~k--~g--~v~~~gw~ 139 (241)
T PRK14114 71 EFA-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLED----PSFLKFL-KEID-VEPVFSLDTR--GG--KVAFKGWL 139 (241)
T ss_pred hhc-CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhCC----HHHHHHH-HHhC-CCEEEEEEcc--CC--EEeeCCCe
Confidence 555 79999999995 99999999999999999999998 9999999 5697 5699999998 67 68899999
Q ss_pred eecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhC---C-CcCE
Q 021156 209 KFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAG---I-GRVD 284 (316)
Q Consensus 209 ~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G---~-g~~g 284 (316)
+.++.++.++++++.+.|++++++|++++|||++|||+++++++++.+++|||++||++|.+|+.++.+.. . +++|
T Consensus 140 ~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~g 219 (241)
T PRK14114 140 AEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRETNGLLKG 219 (241)
T ss_pred ecCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCCcCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcccccCCcEEE
Confidence 99999999999999999999999999999999999999999999998999999999999999999999971 2 3999
Q ss_pred EEEccchhhccCcccHHHHHHHH
Q 021156 285 VTVGSALDIFGGNLAYKDVVAWH 307 (316)
Q Consensus 285 VivG~Al~~~~g~~~~~~~~~~~ 307 (316)
|++|+|+ |+|.++++++++++
T Consensus 220 vivg~Al--~~g~i~~~e~~~~~ 240 (241)
T PRK14114 220 VIVGRAF--LEGILTVEVMKRYA 240 (241)
T ss_pred EEEehHH--HCCCCCHHHHHHhh
Confidence 9999999 99999999998775
No 5
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=100.00 E-value=1.7e-51 Score=373.91 Aligned_cols=224 Identities=31% Similarity=0.472 Sum_probs=197.5
Q ss_pred EEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc----ccHHHHHHHHH
Q 021156 55 RFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP----LSKAAAIEALH 130 (316)
Q Consensus 55 ~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~~v~ 130 (316)
||||||||++|+|||+++|+|. ..+.+ .+||+++|+.|++.|++++|++|||++. .|.+.+.++++
T Consensus 1 ~iiP~iDl~~G~~Vr~~~G~~~--------~~~~~--~~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~ 70 (229)
T PF00977_consen 1 RIIPAIDLKNGRVVRLVKGDRF--------SETVY--SGDPVEVAKAFNEQGADELHIVDLDAAKEGRGSNLELIKEIAK 70 (229)
T ss_dssp EEEEEEEEETTEEEEESTTCCS--------CEECE--CCCHHHHHHHHHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHH
T ss_pred CEEEEEEEECCEEEECCCeecc--------eeeEE--CcCHHHHHHHHHHcCCCEEEEEEccCcccCchhHHHHHHHHHh
Confidence 7999999999999999998753 22445 4799999999999999999999999763 34555566667
Q ss_pred hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcce
Q 021156 131 AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQK 209 (316)
Q Consensus 131 ~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~ 209 (316)
.+++|+|+||||| .+++++++++||++||+||++++| |++++++.+.||+++|++|+|+| +| |.+.+++|++
T Consensus 71 ~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~----~~~l~~~~~~~g~~~ivvslD~~--~g-~~v~~~gw~~ 143 (229)
T PF00977_consen 71 ETGIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALED----PELLEELAERYGSQRIVVSLDAR--DG-YKVATNGWQE 143 (229)
T ss_dssp HSSSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHC----CHHHHHHHHHHGGGGEEEEEEEE--ET-EEEEETTTTE
T ss_pred cCCccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhc----hhHHHHHHHHcCcccEEEEEEee--ec-eEEEecCccc
Confidence 7899999999999 599999999999999999999998 99999999999999999999998 56 6899999999
Q ss_pred ecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEcc
Q 021156 210 FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGS 289 (316)
Q Consensus 210 ~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~ 289 (316)
.++.++.++++++.+.|++++++|++++||+++|||+++++++++.+++|+|++|||++.+|+.++.+.| +++|++|+
T Consensus 144 ~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G--~~gvivg~ 221 (229)
T PF00977_consen 144 SSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKKAG--IDGVIVGS 221 (229)
T ss_dssp EEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTT--ECEEEESH
T ss_pred cCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCC--CcEEEEeh
Confidence 9899999999999999999999999999999999999999999988899999999999999999999998 99999999
Q ss_pred chhhccCccc
Q 021156 290 ALDIFGGNLA 299 (316)
Q Consensus 290 Al~~~~g~~~ 299 (316)
|+ |+|.++
T Consensus 222 al--~~g~it 229 (229)
T PF00977_consen 222 AL--HEGKIT 229 (229)
T ss_dssp HH--HTTSS-
T ss_pred Hh--hCCccC
Confidence 99 999875
No 6
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=100.00 E-value=4.1e-50 Score=365.02 Aligned_cols=223 Identities=22% Similarity=0.306 Sum_probs=197.8
Q ss_pred ccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc---ccHHHHHHHH
Q 021156 53 AVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP---LSKAAAIEAL 129 (316)
Q Consensus 53 ~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~---~~~~~i~~~v 129 (316)
+|+||||||+++|+|||+++|+|++ .+.+ +||+++|+.|+++|++++|++|||++. .|.+.+.+++
T Consensus 1 mm~iIP~iDl~~G~~Vr~~~G~~~~--------~~~~---~dP~~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~ 69 (232)
T PRK13586 1 MSKIIPSIDISLGKAVKRIRGVKGT--------GLIL---GNPIEIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEIS 69 (232)
T ss_pred CcEEEEEEEEECCEEEEeeecCCCC--------ceEc---CCHHHHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHH
Confidence 4799999999999999999987641 1333 489999999999999999999999862 3444444444
Q ss_pred HhCCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcc
Q 021156 130 HAYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQ 208 (316)
Q Consensus 130 ~~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~ 208 (316)
+....|+|+|||||+ ++++++++.||++||+||+++++ |+++++++++||+++|++|+|+|+ ++ .|+++||.
T Consensus 70 ~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~----p~~~~~~~~~~g~~~ivvslD~~~-~~--~v~~~gw~ 142 (232)
T PRK13586 70 KIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTN----FNLFHDIVREIGSNRVLVSIDYDN-TK--RVLIRGWK 142 (232)
T ss_pred hhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCC----HHHHHHHHHHhCCCCEEEEEEcCC-CC--EEEccCCe
Confidence 435569999999995 99999999999999999999998 999999999999999999999942 55 79999997
Q ss_pred eecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEc
Q 021156 209 KFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVG 288 (316)
Q Consensus 209 ~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG 288 (316)
+ +..++.++++++.+.|++++++|++++|||++|+|+++++.+++. ..|+|++||+++.+|+.++.+.| ++||+||
T Consensus 143 ~-~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G~d~el~~~~~~~-~~~viasGGv~s~~Dl~~l~~~G--~~gvivg 218 (232)
T PRK13586 143 E-KSMEVIDGIKKVNELELLGIIFTYISNEGTTKGIDYNVKDYARLI-RGLKEYAGGVSSDADLEYLKNVG--FDYIIVG 218 (232)
T ss_pred e-CCCCHHHHHHHHHhcCCCEEEEecccccccCcCcCHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCC--CCEEEEe
Confidence 7 778999999999999999999999999999999999999999876 55799999999999999999988 9999999
Q ss_pred cchhhccCccc
Q 021156 289 SALDIFGGNLA 299 (316)
Q Consensus 289 ~Al~~~~g~~~ 299 (316)
+|+ |+|.+.
T Consensus 219 ~Al--y~g~~~ 227 (232)
T PRK13586 219 MAF--YLGKLR 227 (232)
T ss_pred hhh--hcCccc
Confidence 999 999864
No 7
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=100.00 E-value=6.7e-50 Score=366.12 Aligned_cols=234 Identities=16% Similarity=0.166 Sum_probs=206.7
Q ss_pred ccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc---ccHHHHHHHH
Q 021156 53 AVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP---LSKAAAIEAL 129 (316)
Q Consensus 53 ~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~---~~~~~i~~~v 129 (316)
.|+||||||+++|+|||+++|++. ..+.| ++|++.|+.|++.|++++|++|||++. .|...+.+++
T Consensus 2 ~m~iiPaIDl~~G~vVrl~~G~~~--------~~~~y---~~p~~~a~~~~~~g~~~lhivDLd~a~g~~~n~~~i~~i~ 70 (243)
T TIGR01919 2 TLILLPAVDVNGGAAVRLQQGAGG--------SKTYY---GSLESAAKWWEQGGAEWIHLVDLDAAFGGGNNEMMLEEVV 70 (243)
T ss_pred ceEEEEEEEEECCEEEEeecCCCC--------Cceec---CCHHHHHHHHHhCCCeEEEEEECCCCCCCcchHHHHHHHH
Confidence 579999999999999999988643 23566 389999999999999999999999862 3455455555
Q ss_pred HhCCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCC-eeEEEeCCc
Q 021156 130 HAYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDG-KYAIVTDRW 207 (316)
Q Consensus 130 ~~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g-~~~v~~~gw 207 (316)
+.+++|+|+|||||+ +++++++++||++||+||+++++ |++++++.+.|| +++++|+|+|. +| ...+.++||
T Consensus 71 ~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~----p~~~~~~~~~~g-~~ivvslD~k~-~g~~~~v~~~Gw 144 (243)
T TIGR01919 71 KLLVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALEN----PWWAAAVIRYGG-DIVAVGLDVLE-DGEWHTLGNRGW 144 (243)
T ss_pred HHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCC----HHHHHHHHHHcc-ccEEEEEEEec-CCceEEEECCCe
Confidence 678899999999995 99999999999999999999998 999999999996 67999999973 33 246788999
Q ss_pred ceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhC-CCcCEEE
Q 021156 208 QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAG-IGRVDVT 286 (316)
Q Consensus 208 ~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G-~g~~gVi 286 (316)
.+ +..++.++++++.+.|++++++|++++|||++|||+++++++++.+++|||++||++|.+|+.++.+.. .|++||+
T Consensus 145 ~~-~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l~~~l~~~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvi 223 (243)
T TIGR01919 145 SD-GGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGGPNELLLEVVAARTDAIVAASGGSSLLDDLRAIKYLDEGGVSVAI 223 (243)
T ss_pred ec-CCCcHHHHHHHHHhCCCCEEEEEecCCcccCCCcCHHHHHHHHhhCCCCEEEECCcCCHHHHHHHHhhccCCeeEEE
Confidence 87 788999999999999999999999999999999999999999999999999999999999999987541 1499999
Q ss_pred EccchhhccCcccHHHHHHH
Q 021156 287 VGSALDIFGGNLAYKDVVAW 306 (316)
Q Consensus 287 vG~Al~~~~g~~~~~~~~~~ 306 (316)
+|+|+ |+|+++++|+++.
T Consensus 224 vg~Al--~~g~i~~~~~~~~ 241 (243)
T TIGR01919 224 GGKLL--YARFFTLEAALAV 241 (243)
T ss_pred EhHHH--HcCCCCHHHHHhh
Confidence 99999 9999999998653
No 8
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-49 Score=351.49 Aligned_cols=241 Identities=23% Similarity=0.354 Sum_probs=215.8
Q ss_pred ccccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH
Q 021156 51 RCAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH 130 (316)
Q Consensus 51 ~~~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~ 130 (316)
++.+|||||+|+++|+||+ +.+|++.++. +||+++|+.|++.|++++.+.|++|.......+++.++
T Consensus 1 mL~kRIIPCLDVk~GrVVK--Gv~F~~lrd~-----------GDpVelA~~Y~e~GADElvFlDItAs~~gr~~~~~vv~ 67 (256)
T COG0107 1 MLAKRIIPCLDVKDGRVVK--GVNFKNLRDA-----------GDPVELAKRYNEEGADELVFLDITASSEGRETMLDVVE 67 (256)
T ss_pred CCcceeEeeEEccCCEEEe--cccccchhhc-----------CChHHHHHHHHHcCCCeEEEEecccccccchhHHHHHH
Confidence 3578999999999999999 6667655543 69999999999999999999999998655555555553
Q ss_pred ----hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeec-CC---eeE
Q 021156 131 ----AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKK-DG---KYA 201 (316)
Q Consensus 131 ----~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~-~g---~~~ 201 (316)
.+.+|++|||||| .+|++++|.+|||+|-|+|.+.+| |+++.+++++||+|+|++++|.|.+ +| .|.
T Consensus 68 r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~~----p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~ 143 (256)
T COG0107 68 RVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVKD----PELITEAADRFGSQCIVVAIDAKRVPDGENGWYE 143 (256)
T ss_pred HHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhcC----hHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEE
Confidence 5789999999999 599999999999999999999998 9999999999999999999999875 33 589
Q ss_pred EEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCC
Q 021156 202 IVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIG 281 (316)
Q Consensus 202 v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g 281 (316)
|+++|+++.+++++++|+++++++|++||++|++|+||+..|+|+++++.+++.+++|||+|||.++++|+.+++..| .
T Consensus 144 v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~v~iPvIASGGaG~~ehf~eaf~~~-~ 222 (256)
T COG0107 144 VFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAGYDLELTRAVREAVNIPVIASGGAGKPEHFVEAFTEG-K 222 (256)
T ss_pred EEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccccccCcCHHHHHHHHHhCCCCEEecCCCCcHHHHHHHHHhc-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998 3
Q ss_pred cCEEEEccchhhccCcccHHHHHHHHHhhc
Q 021156 282 RVDVTVGSALDIFGGNLAYKDVVAWHAQQE 311 (316)
Q Consensus 282 ~~gVivG~Al~~~~g~~~~~~~~~~~~~~~ 311 (316)
++++..++-+ || +.+++.+++++++++.
T Consensus 223 adAaLAAsiF-H~-~~~~i~evK~yL~~~g 250 (256)
T COG0107 223 ADAALAASIF-HF-GEITIGEVKEYLAEQG 250 (256)
T ss_pred ccHHHhhhhh-hc-CcccHHHHHHHHHHcC
Confidence 6655555554 55 8899999999998865
No 9
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=100.00 E-value=1.7e-49 Score=361.80 Aligned_cols=221 Identities=19% Similarity=0.275 Sum_probs=202.3
Q ss_pred cEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHH-cCCCcceEEEecCCc----ccHHHHHHH
Q 021156 54 VRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKE-DGLTGGHAIMLGADP----LSKAAAIEA 128 (316)
Q Consensus 54 ~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~-~G~~~l~lvDLda~~----~~~~~i~~~ 128 (316)
++|||+||+++|+|||+++|+|+ ..++|. +||+++|+.|++ .|++++|++|||++. .|.+.+.++
T Consensus 2 ~~iiPaIDl~~G~~Vr~~~G~~~--------~~~~~~--~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i 71 (234)
T PRK13587 2 IELWPAIDLIGSTSVRLTEGKYD--------SEEKMS--RSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSL 71 (234)
T ss_pred CEEEEEEEccCCEEEEcCcccCC--------CceEeC--CCHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHH
Confidence 67999999999999999999875 236673 699999999999 689999999999873 345555566
Q ss_pred HHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCc
Q 021156 129 LHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRW 207 (316)
Q Consensus 129 v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw 207 (316)
++.+++|+|+||||| .|++++++++||++||+||++++| |+++++++++|| ++|++|+|++ +| .+.++||
T Consensus 72 ~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~----~~~l~~~~~~fg-~~ivvslD~~--~g--~v~~~gw 142 (234)
T PRK13587 72 RRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQD----TDWLKEMAHTFP-GRIYLSVDAY--GE--DIKVNGW 142 (234)
T ss_pred HhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcC----HHHHHHHHHHcC-CCEEEEEEee--CC--EEEecCC
Confidence 677889999999999 599999999999999999999998 999999999997 7799999998 66 6889999
Q ss_pred ceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEE
Q 021156 208 QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTV 287 (316)
Q Consensus 208 ~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gViv 287 (316)
++.++.++.++++++.+.|++++++|++++|||++|+|+++++++.+.+++|||++||+++++|+.++++.| +++|++
T Consensus 143 ~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G--~~~viv 220 (234)
T PRK13587 143 EEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLN--VHAAII 220 (234)
T ss_pred cccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC--CCEEEE
Confidence 999999999999999999999999999999999999999999999988899999999999999999999988 999999
Q ss_pred ccchhhccCc
Q 021156 288 GSALDIFGGN 297 (316)
Q Consensus 288 G~Al~~~~g~ 297 (316)
|+|+ |++.
T Consensus 221 G~a~--~~~~ 228 (234)
T PRK13587 221 GKAA--HQAS 228 (234)
T ss_pred hHHH--HhCh
Confidence 9999 9854
No 10
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=100.00 E-value=3.1e-49 Score=361.70 Aligned_cols=233 Identities=20% Similarity=0.316 Sum_probs=208.0
Q ss_pred cccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc---ccHHHHHHH
Q 021156 52 CAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP---LSKAAAIEA 128 (316)
Q Consensus 52 ~~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~---~~~~~i~~~ 128 (316)
++|+|||+||+++|+|||+++|+|. + .+.| +||+++|+.|+++|++++|++|||++. .|...+.++
T Consensus 2 ~~m~iIP~idl~~G~~V~~~~g~~~--~------~~~~---~dp~~~a~~~~~~g~~~l~ivDLd~~~g~~~n~~~i~~i 70 (241)
T PRK14024 2 MSLTLLPAVDVVDGQAVRLVQGEAG--S------ETSY---GSPLDAALAWQRDGAEWIHLVDLDAAFGRGSNRELLAEV 70 (241)
T ss_pred CceEEEEEEEeECCEEEEeeccccc--C------ceEC---CCHHHHHHHHHHCCCCEEEEEeccccCCCCccHHHHHHH
Confidence 4589999999999999999998754 2 2445 499999999999999999999999873 456566666
Q ss_pred HHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCc
Q 021156 129 LHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRW 207 (316)
Q Consensus 129 v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw 207 (316)
++.+++|+|+||||| .|++++++++||+++++||++++| |+++.+++++|+ +++++|+|++ ++ .+++.||
T Consensus 71 ~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~----p~l~~~i~~~~~-~~i~vsld~~--~~--~v~~~Gw 141 (241)
T PRK14024 71 VGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAALEN----PEWCARVIAEHG-DRVAVGLDVR--GH--TLAARGW 141 (241)
T ss_pred HHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCC----HHHHHHHHHHhh-hhEEEEEEEe--cc--EeccCCe
Confidence 677899999999999 599999999999999999999998 999999999996 6799999997 55 5777999
Q ss_pred ceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhC-CCcCEEE
Q 021156 208 QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAG-IGRVDVT 286 (316)
Q Consensus 208 ~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G-~g~~gVi 286 (316)
.+ +..++.++++++.+.|++++++|+++++|+++|+||++++++++.+++|||++||++|.+|+.++.+.. .|++|||
T Consensus 142 ~~-~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~ 220 (241)
T PRK14024 142 TR-DGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAI 220 (241)
T ss_pred ee-cCccHHHHHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEE
Confidence 86 557899999999999999999999999999999999999999999999999999999999999997541 1399999
Q ss_pred EccchhhccCcccHHHHHHHH
Q 021156 287 VGSALDIFGGNLAYKDVVAWH 307 (316)
Q Consensus 287 vG~Al~~~~g~~~~~~~~~~~ 307 (316)
+|+|+ |+|+++++++++..
T Consensus 221 igra~--~~g~~~~~~~~~~~ 239 (241)
T PRK14024 221 VGKAL--YAGAFTLPEALAVV 239 (241)
T ss_pred EeHHH--HcCCCCHHHHHHHh
Confidence 99999 99999999998764
No 11
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=100.00 E-value=5e-46 Score=338.87 Aligned_cols=228 Identities=33% Similarity=0.433 Sum_probs=201.2
Q ss_pred EEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCC---cccHHHHHHHHHh
Q 021156 55 RFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGAD---PLSKAAAIEALHA 131 (316)
Q Consensus 55 ~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~---~~~~~~i~~~v~~ 131 (316)
|||||||+++|+|||+++|+|+ +|.|. .+.+...+||+++|+.|.++|++++|++|||++ +.|...+.++.+.
T Consensus 1 riiP~iDl~~G~~V~~~~G~~~--~~~p~--~~~~~~~~dp~~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~ 76 (233)
T cd04723 1 RIIPVIDLKDGVVVHGVGGDRD--NYRPI--TSNLCSTSDPLDVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAA 76 (233)
T ss_pred CeEEEEECcCCEEEEeeccChh--hcccc--ccCcccCCCHHHHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHh
Confidence 6899999999999999999875 34432 123332469999999999999999999999986 3455566666677
Q ss_pred CCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCccee
Q 021156 132 YPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKF 210 (316)
Q Consensus 132 ~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~ 210 (316)
+++|+|+|||||+ |++++++++||++||+||++++ + +++++++++||++++++|+|++ +++ +. | +.
T Consensus 77 ~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~----~-~~~~~~~~~~~~~~iivslD~~--~~~--~~---~-~~ 143 (233)
T cd04723 77 WPLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLP----S-DDDEDRLAALGEQRLVLSLDFR--GGQ--LL---K-PT 143 (233)
T ss_pred CCCCEEEecCcCCHHHHHHHHHcCCCeEEEcceecc----c-hHHHHHHHhcCCCCeEEEEecc--CCe--ec---c-cc
Confidence 8899999999995 9999999999999999999998 6 8999999999877999999998 663 33 4 34
Q ss_pred cccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccc
Q 021156 211 SDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA 290 (316)
Q Consensus 211 ~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~A 290 (316)
+..++.++++++.+. +++++++|++++|+++|+|+++++++.+.+++||+++||++|.+|+.++++.| +++|++|+|
T Consensus 144 ~~~~~~~~~~~~~~~-~~~li~~di~~~G~~~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G--~~~vivGsa 220 (233)
T cd04723 144 DFIGPEELLRRLAKW-PEELIVLDIDRVGSGQGPDLELLERLAARADIPVIAAGGVRSVEDLELLKKLG--ASGALVASA 220 (233)
T ss_pred CcCCHHHHHHHHHHh-CCeEEEEEcCccccCCCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcC--CCEEEEehH
Confidence 567899999999999 99999999999999999999999999999999999999999999999999998 999999999
Q ss_pred hhhccCcccHHHHH
Q 021156 291 LDIFGGNLAYKDVV 304 (316)
Q Consensus 291 l~~~~g~~~~~~~~ 304 (316)
+ |+|.+++++++
T Consensus 221 l--~~g~~~~~~~~ 232 (233)
T cd04723 221 L--HDGGLTLEDVV 232 (233)
T ss_pred H--HcCCCCHHHHh
Confidence 9 99999998875
No 12
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=100.00 E-value=9.2e-45 Score=329.34 Aligned_cols=221 Identities=21% Similarity=0.378 Sum_probs=195.4
Q ss_pred ccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc----ccHHHHHHH
Q 021156 53 AVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP----LSKAAAIEA 128 (316)
Q Consensus 53 ~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~~ 128 (316)
+|+|||+||+++|+|||+++|++++ | +.+ .+|+++|+.|.+. ++++|++|||++. .|.+.+.++
T Consensus 1 mmrIip~iD~~~G~vVr~~~G~~~~--~------~~~---~dp~~~a~~~~~~-~~~l~ivDldga~~g~~~n~~~i~~i 68 (228)
T PRK04128 1 MMRIYPAIDLMNGKAVRLYKGRKEE--V------KVY---GDPVEIALRFSEY-VDKIHVVDLDGAFEGKPKNLDVVKNI 68 (228)
T ss_pred CcEEEEEEEeECCEEEEEEeccccC--c------eEC---CCHHHHHHHHHHh-CCEEEEEECcchhcCCcchHHHHHHH
Confidence 4899999999999999999997652 1 233 4899999999998 9999999999752 355555566
Q ss_pred HHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCc
Q 021156 129 LHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRW 207 (316)
Q Consensus 129 v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw 207 (316)
.+.+++|+++||||| .+|+++++++||++||+||+++ | |+++++++++|| + +++|+|+| +| .+.++||
T Consensus 69 ~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~-~----~~~l~~~~~~~g-~-ivvslD~~--~g--~v~~~gw 137 (228)
T PRK04128 69 IRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF-D----LEFLEKVTSEFE-G-ITVSLDVK--GG--RIAVKGW 137 (228)
T ss_pred HhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc-C----HHHHHHHHHHcC-C-EEEEEEcc--CC--eEecCCC
Confidence 667889999999999 5999999999999999999999 7 999999999996 3 99999998 77 6889999
Q ss_pred ceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEE
Q 021156 208 QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTV 287 (316)
Q Consensus 208 ~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gViv 287 (316)
++.++.+++++++++.+. ++++++|++++|||++|+| ++.+.+ .++|||++||+++.+|+.++.+.| ++||++
T Consensus 138 ~~~~~~~~~~~~~~~~~~-~~~ii~t~i~~dGt~~G~d-~l~~~~---~~~pviasGGv~~~~Dl~~l~~~g--~~gviv 210 (228)
T PRK04128 138 LEESSIKVEDAYEMLKNY-VNRFIYTSIERDGTLTGIE-EIERFW---GDEEFIYAGGVSSAEDVKKLAEIG--FSGVII 210 (228)
T ss_pred eEcCCCCHHHHHHHHHHH-hCEEEEEeccchhcccCHH-HHHHhc---CCCCEEEECCCCCHHHHHHHHHCC--CCEEEE
Confidence 998899999999999998 9999999999999999999 444332 579999999999999999999987 999999
Q ss_pred ccchhhccCcccHHHHHH
Q 021156 288 GSALDIFGGNLAYKDVVA 305 (316)
Q Consensus 288 G~Al~~~~g~~~~~~~~~ 305 (316)
|+|+ |+|.++++++++
T Consensus 211 g~al--~~g~~~~~~~~~ 226 (228)
T PRK04128 211 GKAL--YEGRISLEELLE 226 (228)
T ss_pred Ehhh--hcCCcCHHHHHh
Confidence 9999 999999998754
No 13
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=100.00 E-value=8.5e-44 Score=327.75 Aligned_cols=239 Identities=22% Similarity=0.292 Sum_probs=213.0
Q ss_pred cccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc----ccHHHHHH
Q 021156 52 CAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP----LSKAAAIE 127 (316)
Q Consensus 52 ~~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~ 127 (316)
+..+|||+||+++|+|||+++.+ + ..+ ..||.++|+.|+++|++++|++|++++. .+...+.+
T Consensus 2 ~~~~iip~idl~~g~~V~~~~~~----------~-~~~--~~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~ 68 (253)
T PRK02083 2 LAKRIIPCLDVKDGRVVKGVNFV----------N-LRD--AGDPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVER 68 (253)
T ss_pred CCCeEEEEEEEECCEEEEeEEec----------c-eee--cCCHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHH
Confidence 57899999999999999987521 1 123 3699999999999999999999999752 34445555
Q ss_pred HHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeec--CCeeEEEe
Q 021156 128 ALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKK--DGKYAIVT 204 (316)
Q Consensus 128 ~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~--~g~~~v~~ 204 (316)
+.+.+++|+++||||+ .++++++++.||+.|++||..+++ |++++++.+.||++++++++|++.. .+.+.|++
T Consensus 69 i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~~----p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~ 144 (253)
T PRK02083 69 VAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVAN----PELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYT 144 (253)
T ss_pred HHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhhC----cHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEE
Confidence 5567889999999999 599999999999999999999998 9999999999999999999999720 14578999
Q ss_pred CCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHh-CCCcC
Q 021156 205 DRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVA-GIGRV 283 (316)
Q Consensus 205 ~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~-G~g~~ 283 (316)
++|.+.+..++.++++++.+.|++++++|+++++|+++|+|+++++++++.+++|||++||+++.+|+.++++. | ++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G--~~ 222 (253)
T PRK02083 145 HGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGG--AD 222 (253)
T ss_pred cCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCC--cc
Confidence 99999888899999999999999999999999999999999999999999899999999999999999999986 6 99
Q ss_pred EEEEccchhhccCcccHHHHHHHHHhhc
Q 021156 284 DVTVGSALDIFGGNLAYKDVVAWHAQQE 311 (316)
Q Consensus 284 gVivG~Al~~~~g~~~~~~~~~~~~~~~ 311 (316)
+|++|+|+ |+|.+++++++++++++.
T Consensus 223 gvivg~al--~~~~~~~~~~~~~~~~~~ 248 (253)
T PRK02083 223 AALAASIF--HFGEITIGELKAYLAEQG 248 (253)
T ss_pred EEeEhHHH--HcCCCCHHHHHHHHHHCC
Confidence 99999999 999999999999998754
No 14
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=100.00 E-value=1.1e-43 Score=327.23 Aligned_cols=238 Identities=21% Similarity=0.241 Sum_probs=213.1
Q ss_pred cccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc----ccHHHHHH
Q 021156 52 CAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP----LSKAAAIE 127 (316)
Q Consensus 52 ~~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~ 127 (316)
+..+|||+||+++|+|||+++.+ . +.+ ..||+++|+.|++.|++++|++||+++. .+.+.+.+
T Consensus 2 ~~~~iip~iD~~~G~~V~~~~~~----------~-~~~--~~dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~ 68 (254)
T TIGR00735 2 LAKRIIPCLDVRDGRVVKGVQFL----------N-LRD--AGDPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVER 68 (254)
T ss_pred CCCeEEEEEEeECCEEEEeEeec----------C-ceE--CCCHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHH
Confidence 57899999999999999977421 1 223 3599999999999999999999999762 34444455
Q ss_pred HHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCC------ee
Q 021156 128 ALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDG------KY 200 (316)
Q Consensus 128 ~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g------~~ 200 (316)
+.+.+++|+++||||| .+|+++++++||++|++||+++++ |++++++.+.||+++|++++|++ +| .|
T Consensus 69 i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~~----p~~~~~~~~~~~~~~iv~slD~~--~g~~~~~~~~ 142 (254)
T TIGR00735 69 TAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVKN----PELIYELADRFGSQCIVVAIDAK--RVYVNSYCWY 142 (254)
T ss_pred HHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhhC----hHHHHHHHHHcCCCCEEEEEEec--cCCCCCCccE
Confidence 5567889999999999 599999999999999999999998 99999999999889999999997 44 35
Q ss_pred EEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCC
Q 021156 201 AIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGI 280 (316)
Q Consensus 201 ~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~ 280 (316)
.|++++|.+.+..++.++++.+.+.|++++++|+++++|+..|+|+++++++++.+++|||++||+++++|+.++++.|
T Consensus 143 ~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g- 221 (254)
T TIGR00735 143 EVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKG- 221 (254)
T ss_pred EEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC-
Confidence 8999999998888999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CcCEEEEccchhhccCcccHHHHHHHHHhhc
Q 021156 281 GRVDVTVGSALDIFGGNLAYKDVVAWHAQQE 311 (316)
Q Consensus 281 g~~gVivG~Al~~~~g~~~~~~~~~~~~~~~ 311 (316)
++++|++|+++ |++.++++++++++++..
T Consensus 222 ~~dgv~~g~a~--~~~~~~~~~~~~~~~~~g 250 (254)
T TIGR00735 222 KADAALAASVF--HYREITIGEVKEYLAERG 250 (254)
T ss_pred CcceeeEhHHH--hCCCCCHHHHHHHHHHCC
Confidence 69999999999 999999999999998643
No 15
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=100.00 E-value=2.6e-43 Score=325.54 Aligned_cols=239 Identities=18% Similarity=0.211 Sum_probs=209.9
Q ss_pred cccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc----ccHHHHHH
Q 021156 52 CAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP----LSKAAAIE 127 (316)
Q Consensus 52 ~~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~ 127 (316)
++++|||+||+++|++|++.+++. .+ | ..||+++|+.|.++|++++|++|||++. .|.+.+.+
T Consensus 2 ~~~~iipaiD~~~G~~V~~~~~~~----------~~-~--~~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~ 68 (258)
T PRK01033 2 LRPRIIPCLLLKDGGLVKTVKFKD----------PR-Y--IGDPINAVRIFNEKEVDELIVLDIDASKRGSEPNYELIEN 68 (258)
T ss_pred CCcEEEEEEEEECCcEEEeecccC----------ce-e--CCCHHHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHH
Confidence 578999999999999999886431 13 4 2599999999999999999999999762 35555556
Q ss_pred HHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeec-CCeeEEEeC
Q 021156 128 ALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKK-DGKYAIVTD 205 (316)
Q Consensus 128 ~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~-~g~~~v~~~ 205 (316)
+++.+++|+++||||+ .+++++++++|+++|++||+.+++ |+++++++++||++++++|+|+|.. .|.|.+.++
T Consensus 69 i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~~----~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~ 144 (258)
T PRK01033 69 LASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALED----PDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTH 144 (258)
T ss_pred HHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhcC----HHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEc
Confidence 5667889999999999 599999999999999999999998 9999999999988999999999832 134789999
Q ss_pred CcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHH-HhCCCcCE
Q 021156 206 RWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIK-VAGIGRVD 284 (316)
Q Consensus 206 gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~-~~G~g~~g 284 (316)
||++.++.++.++++++++.|++++++|+++++|+++|+|+++++++++.+++|||++||+++.+|+.+++ +.| ++|
T Consensus 145 gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~G--vdg 222 (258)
T PRK01033 145 NGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLG--ADA 222 (258)
T ss_pred CCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCC--CCE
Confidence 99998888999999999999999999999999999999999999999999999999999999999999999 566 999
Q ss_pred EEEccchhhccC--------cccHHHHHHHHHhhc
Q 021156 285 VTVGSALDIFGG--------NLAYKDVVAWHAQQE 311 (316)
Q Consensus 285 VivG~Al~~~~g--------~~~~~~~~~~~~~~~ 311 (316)
|++|+|+ |-. ..++..++.+++++.
T Consensus 223 Vivg~a~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (258)
T PRK01033 223 AAAGSLF--VFKGVYKAVLINYPNGDEKEELLKAG 255 (258)
T ss_pred EEEccee--eeCcccccccccccHHHHHHHHHHcC
Confidence 9999999 545 566777777776553
No 16
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=100.00 E-value=2.7e-43 Score=321.63 Aligned_cols=233 Identities=28% Similarity=0.411 Sum_probs=211.8
Q ss_pred ccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCC----cccHHHHHHH
Q 021156 53 AVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGAD----PLSKAAAIEA 128 (316)
Q Consensus 53 ~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~----~~~~~~i~~~ 128 (316)
.|+||||||+++|+|||+++|++++ | ..+ .+||+++|+.|.+.|++++|++|+++. ..+...+.++
T Consensus 2 ~~~iip~idl~~g~~v~~~~g~~~~--~------~~~--~~~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i 71 (241)
T PRK13585 2 SFEVIPAVDMKGGKCVQLVQGEPGT--E------TVS--YGDPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKI 71 (241)
T ss_pred CeEEEEEEEeECCeEEEeeccccCC--c------eEE--CCCHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHH
Confidence 5899999999999999999987541 1 233 369999999999999999999999965 2456667777
Q ss_pred HHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCc
Q 021156 129 LHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRW 207 (316)
Q Consensus 129 v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw 207 (316)
++.+++|+++||||| .++++.++++||++|++|++.+++ |+++.++.+.||++++++++|++ ++ .+.++||
T Consensus 72 ~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~----~~~~~~i~~~~g~~~i~~sid~~--~~--~v~~~g~ 143 (241)
T PRK13585 72 IEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVEN----PEIVRELSEEFGSERVMVSLDAK--DG--EVVIKGW 143 (241)
T ss_pred HHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhC----hHHHHHHHHHhCCCcEEEEEEee--CC--EEEECCC
Confidence 778899999999999 599999999999999999999997 99999999999999999999998 66 5778999
Q ss_pred ceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEE
Q 021156 208 QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTV 287 (316)
Q Consensus 208 ~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gViv 287 (316)
.+.++.++.++++.+.+.|++++++|+++++|+..|+|+++++++++.+++||+++|||++.+|+.++++.| +++|++
T Consensus 144 ~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~G--a~gv~v 221 (241)
T PRK13585 144 TEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLLEGVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAG--AAGVVV 221 (241)
T ss_pred cccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC--CCEEEE
Confidence 987777899999999999999999999999999999999999999999999999999999999999998888 999999
Q ss_pred ccchhhccCcccHHHHHHHH
Q 021156 288 GSALDIFGGNLAYKDVVAWH 307 (316)
Q Consensus 288 G~Al~~~~g~~~~~~~~~~~ 307 (316)
|+++ |++++.+++++++.
T Consensus 222 gsa~--~~~~~~~~~~~~~~ 239 (241)
T PRK13585 222 GSAL--YKGKFTLEEAIEAV 239 (241)
T ss_pred EHHH--hcCCcCHHHHHHHh
Confidence 9999 99999999987764
No 17
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=100.00 E-value=1.4e-43 Score=354.87 Aligned_cols=247 Identities=21% Similarity=0.274 Sum_probs=210.4
Q ss_pred ccccccEEEEEEEeeC---C--eEEEEEcccc--------cCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEe
Q 021156 49 SVRCAVRFRPCIDIHK---G--KVKQIVGSTL--------QDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIML 115 (316)
Q Consensus 49 ~~~~~~~iIP~IDi~~---G--~vvr~~~g~~--------~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDL 115 (316)
+..+++|||||+|+++ | .||+ +-+| ++.+| -+||+++|+.|+++|++++|++||
T Consensus 223 ~~~l~~riip~l~v~~~~~g~~~v~k--g~~f~~~~~~~~~~~~~-----------~gdPve~a~~y~~~Gadel~~~Di 289 (538)
T PLN02617 223 SKSLAKRVIACLDVRSNDKGDLVVTK--GDQYDVREHSEGREVRN-----------LGKPVELAGQYYKDGADEVAFLNI 289 (538)
T ss_pred ccCccceEEEEEEeecCCCCceEEee--cccccccccccccCCCc-----------CCCHHHHHHHHHHcCCCEEEEEEC
Confidence 3567899999999997 6 4555 5566 22222 379999999999999999999999
Q ss_pred cCCc---cc----HHHHHHHHHhCCCcEEEecCCCH------------HHHHHHHHcCCCEEEeCCeeecCC--------
Q 021156 116 GADP---LS----KAAAIEALHAYPGGLQVGGGINS------------DNSLSYIEEGATHVIVTSYVFNNG-------- 168 (316)
Q Consensus 116 da~~---~~----~~~i~~~v~~~~~pl~vGGGIr~------------e~~~~~l~~Gad~VVigt~~~~~~-------- 168 (316)
++.. .. .+.+.++++.+++|++||||||+ |+++++|++|||+|+|||.+++++
T Consensus 290 ~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~ 369 (538)
T PLN02617 290 TGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVYAAEEYIASGV 369 (538)
T ss_pred CCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHHcCCCEEEEChHHHhChhhhhcccc
Confidence 9852 22 33445555678999999999994 559999999999999999999862
Q ss_pred CCCHHHHHHHHHHhcCceEEEeeeeeec--------------------CCe----eEEEeCCcceecccCHHHHHHHHHH
Q 021156 169 QMDLERLKDLVRVVGKQRLVLDLSCRKK--------------------DGK----YAIVTDRWQKFSDVYLDERVLDFLA 224 (316)
Q Consensus 169 ~~~~eli~ei~~~~G~~~IvvslD~k~~--------------------~g~----~~v~~~gw~~~~~~~~~e~a~~~~~ 224 (316)
+.+|+++++++++||+|+|+++||+|.. +|+ |.|+++||++.++++++++++++++
T Consensus 370 ~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~ 449 (538)
T PLN02617 370 KTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEE 449 (538)
T ss_pred ccCHHHHHHHHHHcCCceEEEEEecCcCcccCccccccccccccccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHh
Confidence 2357999999999999999999999721 111 7799999999999999999999999
Q ss_pred cCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156 225 SYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV 304 (316)
Q Consensus 225 ~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~ 304 (316)
+|+++|++|++++|||++|+|+++++.+++.+++|||+|||+++++|+.++++.+ ++++++.|+.+ |-+..++.+++
T Consensus 450 ~Gageil~t~id~DGt~~G~d~~l~~~v~~~~~ipviasGG~g~~~d~~~~~~~~-~~~a~~aa~~f--h~~~~~~~~~k 526 (538)
T PLN02617 450 LGAGEILLNCIDCDGQGKGFDIELVKLVSDAVTIPVIASSGAGTPEHFSDVFSKT-NASAALAAGIF--HRKEVPISSVK 526 (538)
T ss_pred cCCCEEEEeeccccccccCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHhcC-CccEEEEEeee--ccCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999865 47888888777 66789999999
Q ss_pred HHHHhhc
Q 021156 305 AWHAQQE 311 (316)
Q Consensus 305 ~~~~~~~ 311 (316)
+++.+..
T Consensus 527 ~~l~~~g 533 (538)
T PLN02617 527 EHLLEEG 533 (538)
T ss_pred HHHHHCC
Confidence 9988754
No 18
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=100.00 E-value=1.4e-43 Score=320.17 Aligned_cols=216 Identities=19% Similarity=0.177 Sum_probs=184.2
Q ss_pred cEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc--ccHHHHHHHHHh
Q 021156 54 VRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP--LSKAAAIEALHA 131 (316)
Q Consensus 54 ~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~--~~~~~i~~~v~~ 131 (316)
|||||+||+++|+|||+++|+|+ .|+|.+..+.| .+||+++|+.|++.|++++|++|||+.. ..+..+++.+.+
T Consensus 1 m~iIP~iDl~~g~~Vr~~~G~~~--~~~~~~~~~~~--~~dP~~~a~~~~~~g~~~l~ivDLd~~~~~~~n~~~i~~i~~ 76 (221)
T TIGR00734 1 MKIIPVIDLKDGIAVAGKSGERE--SYPPLESVSRL--SSSPDDAAKVIEEIGARFIYIADLDRIVGLGDNFSLLSKLSK 76 (221)
T ss_pred CEEEEEEEeeCCEEEEccccCcc--cccccccceec--CCCHHHHHHHHHHcCCCEEEEEEcccccCCcchHHHHHHHHh
Confidence 79999999999999999999876 44443222344 4799999999999999999999999873 334444444433
Q ss_pred CCCcEEEecCCC-HHHHHHHHH--cCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcc
Q 021156 132 YPGGLQVGGGIN-SDNSLSYIE--EGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQ 208 (316)
Q Consensus 132 ~~~pl~vGGGIr-~e~~~~~l~--~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~ 208 (316)
. .|+|+||||| .|++++++. .||++||+||+++++ |++++++. +++|+|++ +| .+.+.||.
T Consensus 77 ~-~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~~~----p~~l~~~~-------~vvslD~~--~g--~v~~~g~~ 140 (221)
T TIGR00734 77 R-VELIADCGVRSPEDLETLPFTLEFASRVVVATETLDI----TELLRECY-------TVVSLDFK--EK--FLDASGLF 140 (221)
T ss_pred h-CcEEEcCccCCHHHHHHHHhhhccceEEeecChhhCC----HHHHHHhh-------hEEEEEeE--CC--cccccccc
Confidence 2 4899999999 599999976 369999999999998 99998874 48999998 66 46778998
Q ss_pred eecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEc
Q 021156 209 KFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVG 288 (316)
Q Consensus 209 ~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG 288 (316)
+ ++.++...+.+.|+ ++++||+++|||++|+|+++++++++.+++|||++||++|++|+.++++.| +++|++|
T Consensus 141 ~----~~~~~~~~~~~~g~-~ii~tdI~~dGt~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~G--a~~vivg 213 (221)
T TIGR00734 141 E----SLEEVRDFLNSFDY-GLIVLDIHSVGTMKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMG--VSAVLVA 213 (221)
T ss_pred c----cHHHHHHHHHhcCC-EEEEEECCccccCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCC--CCEEEEh
Confidence 5 57788888888998 789999999999999999999999999999999999999999999999988 9999999
Q ss_pred cchhhccCcc
Q 021156 289 SALDIFGGNL 298 (316)
Q Consensus 289 ~Al~~~~g~~ 298 (316)
+|+ |+|++
T Consensus 214 sal--~~g~i 221 (221)
T TIGR00734 214 TAV--HKGKI 221 (221)
T ss_pred HHh--hCCCC
Confidence 999 99874
No 19
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=100.00 E-value=3.2e-43 Score=319.34 Aligned_cols=227 Identities=24% Similarity=0.396 Sum_probs=204.6
Q ss_pred cEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc----ccHHHHHHHH
Q 021156 54 VRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP----LSKAAAIEAL 129 (316)
Q Consensus 54 ~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~~v 129 (316)
|+|||+||+++|+|||+++|+++. .+.+ ..||+++|+.|++.|++++|++|||+.. .+.+.+.++.
T Consensus 1 m~iip~iD~~~g~~v~~~~G~~~~--------~~~~--~~~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~ 70 (233)
T PRK00748 1 MIIIPAIDLKDGKCVRLYQGDYDQ--------ATVY--SDDPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIV 70 (233)
T ss_pred CeEEEEEEEECCeEEEcccccccc--------ceEe--cCCHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHH
Confidence 689999999999999999887542 2334 3699999999999999999999999862 4555555555
Q ss_pred HhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcc
Q 021156 130 HAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQ 208 (316)
Q Consensus 130 ~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~ 208 (316)
+.+++|+++||||| .+|+++++++||++|++|++.+++ |++++++.+.| ++++++++|+| ++ .+.+++|.
T Consensus 71 ~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~~----~~~l~ei~~~~-~~~i~vsid~k--~~--~v~~~g~~ 141 (233)
T PRK00748 71 KAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVKN----PELVKEACKKF-PGKIVVGLDAR--DG--KVATDGWL 141 (233)
T ss_pred HHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHhC----HHHHHHHHHHh-CCCceeeeecc--CC--EEEEccCe
Confidence 67889999999999 599999999999999999999997 99999999999 57899999998 55 68889998
Q ss_pred eecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEc
Q 021156 209 KFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVG 288 (316)
Q Consensus 209 ~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG 288 (316)
+.+..++.++++.+.+.|++++++|+++++|+++|+|+++++++++.+++|+|++||+++++|+.++++.| +++||++|
T Consensus 142 ~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g-~~~gv~vg 220 (233)
T PRK00748 142 ETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLG-AVEGVIVG 220 (233)
T ss_pred ecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC-CccEEEEE
Confidence 87788899999999999999999999999999999999999999998899999999999999999999987 69999999
Q ss_pred cchhhccCcccHHH
Q 021156 289 SALDIFGGNLAYKD 302 (316)
Q Consensus 289 ~Al~~~~g~~~~~~ 302 (316)
+|+ |.|.++++|
T Consensus 221 ~a~--~~~~~~~~~ 232 (233)
T PRK00748 221 RAL--YEGKFDLAE 232 (233)
T ss_pred HHH--HcCCcCccc
Confidence 999 999998876
No 20
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=100.00 E-value=7.9e-43 Score=316.48 Aligned_cols=224 Identities=25% Similarity=0.415 Sum_probs=202.0
Q ss_pred EEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc----ccHHHHHHHHHh
Q 021156 56 FRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP----LSKAAAIEALHA 131 (316)
Q Consensus 56 iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~~v~~ 131 (316)
|||+||+++|+|||+++|++++ | +++ ..||+++|+.|++.|++++|++|||+.. .|.+.+.++.+.
T Consensus 1 iip~id~~~g~~v~~~~G~~~~--~------~~~--~~dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~ 70 (230)
T TIGR00007 1 IIPAIDIKDGKCVRLYQGDYDK--E------TVY--GDDPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRE 70 (230)
T ss_pred CEeEEEeeCCEEEEeeccccCc--c------eEe--cCCHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHh
Confidence 6999999999999999987652 2 334 3699999999999999999999999862 244445555566
Q ss_pred CCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCccee
Q 021156 132 YPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKF 210 (316)
Q Consensus 132 ~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~ 210 (316)
+++|+++||||| .+++++++++||++|++||..+++ |+.+.++++++|++++++++|+| +| .+.++||++.
T Consensus 71 ~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d----~~~~~~~~~~~g~~~i~~sid~~--~~--~v~~~g~~~~ 142 (230)
T TIGR00007 71 TGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVEN----PDLVKELLKEYGPERIVVSLDAR--GG--EVAVKGWLEK 142 (230)
T ss_pred cCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhhC----HHHHHHHHHHhCCCcEEEEEEEE--CC--EEEEcCCccc
Confidence 889999999999 599999999999999999999997 99999999999989999999998 67 5888999987
Q ss_pred cccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccc
Q 021156 211 SDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA 290 (316)
Q Consensus 211 ~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~A 290 (316)
+..++.++++.+.+.|++++++|+++++|+..|+|+++++++++.+++|++++|||++.+|++++++.| +++|++|++
T Consensus 143 ~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~G--adgv~ig~a 220 (230)
T TIGR00007 143 SEVSLEELAKRLEELGLEGIIYTDISRDGTLSGPNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLG--VYGVIVGKA 220 (230)
T ss_pred CCCCHHHHHHHHHhCCCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCC--CCEEEEeHH
Confidence 778899999999999999999999999999999999999999998999999999999999999999987 999999999
Q ss_pred hhhccCcccHH
Q 021156 291 LDIFGGNLAYK 301 (316)
Q Consensus 291 l~~~~g~~~~~ 301 (316)
+ |.+.++++
T Consensus 221 ~--~~~~~~~~ 229 (230)
T TIGR00007 221 L--YEGKITLE 229 (230)
T ss_pred H--HcCCCCCC
Confidence 9 99998865
No 21
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=100.00 E-value=8.6e-42 Score=309.94 Aligned_cols=228 Identities=26% Similarity=0.430 Sum_probs=204.7
Q ss_pred EEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc----ccHHHHHHHHH
Q 021156 55 RFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP----LSKAAAIEALH 130 (316)
Q Consensus 55 ~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~~v~ 130 (316)
.||||||++||+|||.++|+|.. | ..+ ..+|.++|+.|.+.|++++|++||++.. .+.+.+.++.+
T Consensus 1 ~iip~idl~~g~~v~~~~G~~~~--~------~~~--~~dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~ 70 (234)
T cd04732 1 IIIPAIDLKDGKCVRLYQGDYDK--K------TVY--SDDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVK 70 (234)
T ss_pred CEEEEEEeECCEEEEeecccCCC--C------eEE--CCCHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHH
Confidence 48999999999999999998752 1 223 3699999999999999999999999762 24555555556
Q ss_pred hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcce
Q 021156 131 AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQK 209 (316)
Q Consensus 131 ~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~ 209 (316)
.+++|+++||||+ .+++++++++|||+|++|+..+.+ |++++++.+.||++++++++|++ ++ .+.+.+|.+
T Consensus 71 ~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~d----p~~~~~i~~~~g~~~i~~sid~~--~~--~~~~~~~~~ 142 (234)
T cd04732 71 AVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKN----PELVKELLKEYGGERIVVGLDAK--DG--KVATKGWLE 142 (234)
T ss_pred hcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHhC----hHHHHHHHHHcCCceEEEEEEee--CC--EEEECCCee
Confidence 6889999999999 599999999999999999999997 99999999999988999999998 66 566788987
Q ss_pred ecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEcc
Q 021156 210 FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGS 289 (316)
Q Consensus 210 ~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~ 289 (316)
.+..++.++++.+.+.|++++++|+++++|+..|+|+++++++++.+++|++++||+++.+|+.++++.| +++|++|+
T Consensus 143 ~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~G--a~gv~vg~ 220 (234)
T cd04732 143 TSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLDDIKALKELG--VAGVIVGK 220 (234)
T ss_pred ecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCC--CCEEEEeH
Confidence 7778899999999999999999999999999999999999999999999999999999999999999987 99999999
Q ss_pred chhhccCcccHHHHH
Q 021156 290 ALDIFGGNLAYKDVV 304 (316)
Q Consensus 290 Al~~~~g~~~~~~~~ 304 (316)
++ |.|++++++++
T Consensus 221 ~~--~~~~~~~~~~~ 233 (234)
T cd04732 221 AL--YEGKITLEEAL 233 (234)
T ss_pred HH--HcCCCCHHHHh
Confidence 99 99999988764
No 22
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=100.00 E-value=2.1e-39 Score=296.57 Aligned_cols=236 Identities=22% Similarity=0.295 Sum_probs=208.4
Q ss_pred cEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCC----cccHHHHHHHH
Q 021156 54 VRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGAD----PLSKAAAIEAL 129 (316)
Q Consensus 54 ~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~----~~~~~~i~~~v 129 (316)
++|||+||+++|+||++.+.+ . ..+ ..+|.++|+.|+++|++++|++|+++. +.+.+.+.++.
T Consensus 1 ~~ii~~iD~~~g~~v~~~~~~----------~-~~~--~~d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~ 67 (243)
T cd04731 1 KRIIPCLDVKDGRVVKGVNFK----------N-LRD--AGDPVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVA 67 (243)
T ss_pred CeEEEEEEEECCeEEEeEccc----------c-cee--CCCHHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHH
Confidence 489999999999999987532 1 122 258999999999999999999999965 23444455555
Q ss_pred HhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCC-eeEEEeCCc
Q 021156 130 HAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDG-KYAIVTDRW 207 (316)
Q Consensus 130 ~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g-~~~v~~~gw 207 (316)
+.+++|++++|||+ .++++++++.||+.|++|+.++++ |+++.++.+.|+++++++++|+|.+.+ .+.|.+++|
T Consensus 68 ~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~~----p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~ 143 (243)
T cd04731 68 EEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVEN----PELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGG 143 (243)
T ss_pred HhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhhC----hHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCC
Confidence 56889999999999 599999999999999999999998 999999999998889999999985321 258999999
Q ss_pred ceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEE
Q 021156 208 QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTV 287 (316)
Q Consensus 208 ~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gViv 287 (316)
.+.+..+..++++.+.+.|++++++|+++++|+.+|+|+++++++++.+++|||++|||++++|+.++++.+ |+++|++
T Consensus 144 ~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~-g~dgv~v 222 (243)
T cd04731 144 RKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEG-GADAALA 222 (243)
T ss_pred ceecCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhC-CCCEEEE
Confidence 988888999999999999999999999999999999999999999998899999999999999999999983 3999999
Q ss_pred ccchhhccCcccHHHHHHHHHh
Q 021156 288 GSALDIFGGNLAYKDVVAWHAQ 309 (316)
Q Consensus 288 G~Al~~~~g~~~~~~~~~~~~~ 309 (316)
|+|+ |+|.+++++++++++.
T Consensus 223 g~al--~~~~~~~~~~~~~~~~ 242 (243)
T cd04731 223 ASIF--HFGEYTIAELKEYLAE 242 (243)
T ss_pred eHHH--HcCCCCHHHHHHHHhh
Confidence 9999 9999999999888753
No 23
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=100.00 E-value=3.5e-38 Score=286.66 Aligned_cols=221 Identities=21% Similarity=0.293 Sum_probs=194.5
Q ss_pred cccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc----ccHHHHHH
Q 021156 52 CAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP----LSKAAAIE 127 (316)
Q Consensus 52 ~~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~ 127 (316)
+..+|||+||+++|++|++++++. + + + ..+|+++|+.|++.|++++|++||++.. .+.+.+.+
T Consensus 2 ~~~~ii~~iD~~~g~~V~~~~~~~-------~---~-~--~~dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~ 68 (232)
T TIGR03572 2 LKKRIIPCLLLKDGRLVKTVQFKD-------P---R-Y--IGDPVNAARIYNAKGADELIVLDIDASKRGREPLFELISN 68 (232)
T ss_pred CCceEEEEEEEECCeEEEeeccCC-------C---e-E--CCCHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHHHH
Confidence 467999999999999999875321 1 1 2 2589999999999999999999999762 45555566
Q ss_pred HHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeec--CCeeEEEe
Q 021156 128 ALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKK--DGKYAIVT 204 (316)
Q Consensus 128 ~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~--~g~~~v~~ 204 (316)
+.+.+++|+++|||+| .++++++++.||+.|++|++.+++ |++++++.+.||.++|++++|++.. .+.|.+.+
T Consensus 69 i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~~----~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~ 144 (232)
T TIGR03572 69 LAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALEN----PDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYS 144 (232)
T ss_pred HHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhcC----HHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEE
Confidence 6667899999999999 599999999999999999999998 9999999999987789999999831 11157999
Q ss_pred CCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHH-HHHhCCCcC
Q 021156 205 DRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEK-IKVAGIGRV 283 (316)
Q Consensus 205 ~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~-l~~~G~g~~ 283 (316)
++|++.+..++.+.++.+.+.|++++++|+++++|+..|+|+++++++++.+++||+++||+++.+|+.+ +.+.| ++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~g--ad 222 (232)
T TIGR03572 145 DNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAG--AS 222 (232)
T ss_pred CCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcC--CC
Confidence 9999888888999999999999999999999999999999999999999999999999999999999999 66666 99
Q ss_pred EEEEccch
Q 021156 284 DVTVGSAL 291 (316)
Q Consensus 284 gVivG~Al 291 (316)
+|++|+|+
T Consensus 223 gV~vg~a~ 230 (232)
T TIGR03572 223 AVAAASLF 230 (232)
T ss_pred EEEEehhh
Confidence 99999999
No 24
>KOG3055 consensus Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-38 Score=272.25 Aligned_cols=260 Identities=69% Similarity=1.125 Sum_probs=235.5
Q ss_pred cccccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHH
Q 021156 50 VRCAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEAL 129 (316)
Q Consensus 50 ~~~~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v 129 (316)
+.+..+++|||||.+|+|.++++|...+-+ +-.+.|+|.|+.....+|+.|.+.+..+-|++.|. +.+....+.++
T Consensus 3 ~~~~t~FrpCIDiH~G~VKQIVGgTL~~~d--~dV~kTNfvS~kpssyYAklYK~~~l~G~HVImLG--Pn~~~AA~~AL 78 (263)
T KOG3055|consen 3 LISATQFRPCIDIHKGKVKQIVGGTLRDLD--GDVLKTNFVSDKPSSYYAKLYKEDGLTGGHVIMLG--PNSQAAAIGAL 78 (263)
T ss_pred cccccceecceeeccCeeeeeeccccccCc--CCcccccccccCchHHHHHHHhhcCCCcceEEEEC--CCcHHHHHHHH
Confidence 456788999999999999999998775422 22346889876666689999999999999999996 45666778888
Q ss_pred HhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcce
Q 021156 130 HAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQK 209 (316)
Q Consensus 130 ~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~ 209 (316)
.+.+.-+||||||+++.+..+++.||++||+.|..+++|+++.+.++++++..|++|+++.+.+|+++|+|.+.++.|+.
T Consensus 79 h~~Pg~LQvGGGIN~~Nc~~wl~egASkVIVTSwlF~~g~fdL~RLk~i~s~~GKdRlvvDlSCRkkDgRw~~a~nkWQ~ 158 (263)
T KOG3055|consen 79 HAYPGGLQVGGGINSENCMSWLEEGASKVIVTSWLFNNGKFDLERLKDIVSIVGKDRLVVDLSCRKKDGRWAIATNKWQK 158 (263)
T ss_pred HhCCCceeecCccChHHHHHHHHhcCceEEEEEEeccCCcccHHHHHHHHHHhCcceEEEEeeeeccCCeEEEEechhhh
Confidence 88999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred ecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEcc
Q 021156 210 FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGS 289 (316)
Q Consensus 210 ~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~ 289 (316)
.+++.+-+..-++.....+++++|..|.+|...|+|.+++.++-+.+++|+.++||+++++|++.+.+++.|--.+.+|+
T Consensus 159 ~td~eLne~~l~~L~~y~~EFLiHaaDVEGlc~GIDE~LV~kLgew~kip~tYAGG~~s~dDl~lvd~lskGkVDlT~GS 238 (263)
T KOG3055|consen 159 FTDVELNEKSLEFLGGYSDEFLIHAADVEGLCLGIDEELVAKLGEWSKIPVTYAGGVTSMDDLELVDDLSKGKVDLTVGS 238 (263)
T ss_pred hhheeeCHHHHHHHhccchhheeeccccchhhcCccHHHHHHhccceecceEEecCceehhHHHHHHhhcCCceeEEecc
Confidence 88877777777777777999999999999999999999999999999999999999999999999999987788899999
Q ss_pred chhhccCcccHHHHHHHHHhhccc
Q 021156 290 ALDIFGGNLAYKDVVAWHAQQEAL 313 (316)
Q Consensus 290 Al~~~~g~~~~~~~~~~~~~~~~~ 313 (316)
|+++|+|.+.|+++.+|.++|..+
T Consensus 239 aLDIFGG~l~f~dvvaWn~kq~~l 262 (263)
T KOG3055|consen 239 ALDIFGGNLPFKDVVAWNHKQHSL 262 (263)
T ss_pred hhhhhcCCcchhhhhhcccccCCC
Confidence 999999999999999999988764
No 25
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=99.97 E-value=3.7e-30 Score=222.96 Aligned_cols=221 Identities=23% Similarity=0.254 Sum_probs=185.1
Q ss_pred cEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc--ccHHHHHHHHHh
Q 021156 54 VRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP--LSKAAAIEALHA 131 (316)
Q Consensus 54 ~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~--~~~~~i~~~v~~ 131 (316)
|+++|+|||++|+||..++|+|+ +|+|.. ..|+.++||+++|+.+...|++.+|++|||+.. ..+..+++.+..
T Consensus 1 m~vi~viDik~g~vV~gKsg~re--~Y~Pis--~~~~~s~dP~eia~~lr~rgar~vYiADLdaI~g~g~n~d~i~~l~~ 76 (229)
T COG1411 1 MKVIFVIDIKDGKVVVGKSGERE--EYRPIS--SRYCLSDDPLEIAEALRERGARFVYIADLDAILGGGDNADTIRELSS 76 (229)
T ss_pred CceEEEEEeccCcEEeccCCCcc--cccCcc--eeecCCCChHHHHHHHhhccCceEEeeehHHHhcCCCcHHHHHHHHh
Confidence 78999999999999999999987 777744 477778899999999999999999999999862 345555555543
Q ss_pred CCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCccee
Q 021156 132 YPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKF 210 (316)
Q Consensus 132 ~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~ 210 (316)
. .+++++-|+| .++.++.+.. +++.+++|+.+++ .+..++ .++++|+|+| +++ + ...|.+
T Consensus 77 ~-~~~ivD~Gv~dL~s~~~~l~~-~~~~vv~TEt~e~----~e~~e~-------~r~vvslD~k--~~~--L-l~~~~e- 137 (229)
T COG1411 77 L-EKVIVDVGVRDLESHAHRLIP-AETAVVGTETLED----TEEDEE-------GRIVVSLDVK--GGE--L-LGPWLE- 137 (229)
T ss_pred h-hhheeecccccccCHHHhcCC-Ccceeeccchhhh----hhhhhc-------cceEEEEecC--CCe--e-cCCCch-
Confidence 2 3489999999 5887777764 7899999999986 555444 5899999998 552 2 245532
Q ss_pred cccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccc
Q 021156 211 SDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA 290 (316)
Q Consensus 211 ~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~A 290 (316)
+.+|..+.+....-.-+|+.|+++.||++|||.|++..+...+..||+.+|||+.+||++.+..+| ++||++|+|
T Consensus 138 ---d~le~Vk~l~~~~~~~lIvLDi~aVGt~~G~~~E~l~~~~~~s~~pVllGGGV~g~Edlel~~~~G--v~gvLvaTa 212 (229)
T COG1411 138 ---DFLETVKDLNYRRDPGLIVLDIGAVGTKSGPDYELLTKVLELSEHPVLLGGGVGGMEDLELLLGMG--VSGVLVATA 212 (229)
T ss_pred ---hHHHHHHHHhccCCCCeEEEEccccccccCCCHHHHHHHHHhccCceeecCCcCcHHHHHHHhcCC--Cceeeehhh
Confidence 467778888777777789999999999999999999999999999999999999999999999998 999999999
Q ss_pred hhhccCcccHHHHH
Q 021156 291 LDIFGGNLAYKDVV 304 (316)
Q Consensus 291 l~~~~g~~~~~~~~ 304 (316)
+ |+|.++++...
T Consensus 213 l--h~G~vple~~~ 224 (229)
T COG1411 213 L--HEGVVPLEVEQ 224 (229)
T ss_pred h--hcCcCcHHHHh
Confidence 9 99999987653
No 26
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=99.92 E-value=2.5e-24 Score=199.78 Aligned_cols=253 Identities=21% Similarity=0.285 Sum_probs=193.5
Q ss_pred ccccEEEEEEEeeCCe----EEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCC---cccHH
Q 021156 51 RCAVRFRPCIDIHKGK----VKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGAD---PLSKA 123 (316)
Q Consensus 51 ~~~~~iIP~IDi~~G~----vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~---~~~~~ 123 (316)
.+..|||.|+|++..- ||. +|+-++.+.+. .....-.-+.|+++|..|.+.|++++.+..+..- +....
T Consensus 227 gLtkRiIACLDVRtND~GDLVVT--KGDQYDVREkS--~g~eVRNLGKPV~Laq~Yyq~GADEv~FLNITsFRdcPl~D~ 302 (541)
T KOG0623|consen 227 GLTKRIIACLDVRTNDKGDLVVT--KGDQYDVREKS--NGNEVRNLGKPVDLAQQYYQDGADEVSFLNITSFRDCPLGDL 302 (541)
T ss_pred hhhhhheeeeeeeccCCCceEEe--cCcccchhhcc--CchhhhccCChHHHHHHHHhcCCceeEEEeeccccCCCcccC
Confidence 5668999999997542 555 66422222111 1111112368999999999999999999988742 22333
Q ss_pred HHHHHH----HhCCCcEEEecCCC-HH-----------HHHHHHHcCCCEEEeCCeeecC-------C-C-CCHHHHHHH
Q 021156 124 AAIEAL----HAYPGGLQVGGGIN-SD-----------NSLSYIEEGATHVIVTSYVFNN-------G-Q-MDLERLKDL 178 (316)
Q Consensus 124 ~i~~~v----~~~~~pl~vGGGIr-~e-----------~~~~~l~~Gad~VVigt~~~~~-------~-~-~~~eli~ei 178 (316)
.|++.+ +.+.+|++|||||| .. -+..||..|||+|-|||-+..- | + ....-++.+
T Consensus 303 PMlqVL~qaaktVFVPLTVGGGIrD~~D~dGt~~palEVA~~YFRSGADKvSIGsDAVyAAEkyye~G~k~~Gks~iEtI 382 (541)
T KOG0623|consen 303 PMLQVLRQAAKTVFVPLTVGGGIRDFTDADGTYYPALEVAAEYFRSGADKVSIGSDAVYAAEKYYESGVKGTGKSSIETI 382 (541)
T ss_pred hHHHHHHHhhceEEEEEeecCcccccccCCCcCchhHHHHHHHHhcCCceeeechhHHHHHHHHHHhccCCCCcChHHHH
Confidence 344444 34779999999998 22 2567899999999999876532 2 1 124568999
Q ss_pred HHHhcCceEEEeeeeeec------C--------------Ce----eEEEeCCcceecccCHHHHHHHHHHcCCCEEEEee
Q 021156 179 VRVVGKQRLVLDLSCRKK------D--------------GK----YAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHG 234 (316)
Q Consensus 179 ~~~~G~~~IvvslD~k~~------~--------------g~----~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd 234 (316)
++.||.|.+++|+|-|.. + |+ |.+.++|+++..++..+|+.+.++.+|+++|+++.
T Consensus 383 SkaYGnQAVViSvDPkRvYVn~p~Dtk~kV~~t~~pGPNGE~YcWYQCTvkGGRE~Rdigv~ELtrAcEalGAGEiLLNC 462 (541)
T KOG0623|consen 383 SKAYGNQAVVISVDPKRVYVNHPDDTKYKVIRTTNPGPNGEEYCWYQCTVKGGREGRDIGVFELTRACEALGAGEILLNC 462 (541)
T ss_pred HHHhCCeeEEEEeCCceeeecCCccCcceEEEecCCCCCCceeEEEEEEEcCCcccCccchhhHHHHHHHhCcchheeee
Confidence 999999999999997641 1 21 45567888888888999999999999999999999
Q ss_pred cCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHhh
Q 021156 235 VDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQQ 310 (316)
Q Consensus 235 i~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~~ 310 (316)
+|.||...|+|+|+++.+.+.++||||+|.|.+.+++++++++.. .+++++-+-.+ |.+.++++++++++...
T Consensus 463 iD~DGsn~GyDieLv~lvkdsV~IPVIASSGAG~P~HFeEvF~kT-~adAaLaAGiF--HR~e~~i~dVKEyL~eh 535 (541)
T KOG0623|consen 463 IDCDGSNKGYDIELVKLVKDSVGIPVIASSGAGTPDHFEEVFEKT-NADAALAAGIF--HRKEVPIQDVKEYLQEH 535 (541)
T ss_pred eccCCCCCCcchhHHHHhhcccCCceEecCCCCCcHHHHHHHHhc-Cchhhhhccce--ecCccchHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999987 36555544444 56889999999988764
No 27
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=99.87 E-value=1.4e-20 Score=169.45 Aligned_cols=176 Identities=17% Similarity=0.151 Sum_probs=142.9
Q ss_pred ccCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecCCC
Q 021156 92 DKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQ 169 (316)
Q Consensus 92 ~~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~~~ 169 (316)
..+|.++|+.|.+.|++++|++|+++.........+.++ .+++|++++|+++. ++++.++++|||.|++++..+.
T Consensus 30 ~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~--- 106 (217)
T cd00331 30 DFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALD--- 106 (217)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCC---
Confidence 468999999999999999999999987533334444444 46899999999985 7899999999999999998876
Q ss_pred CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHH
Q 021156 170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELV 249 (316)
Q Consensus 170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli 249 (316)
++.++++.+.+ ....+|+ .+.+++|. .++++.+.|++.+.+| .++++..++|++.+
T Consensus 107 --~~~~~~~~~~~----~~~g~~~-------~v~v~~~~---------e~~~~~~~g~~~i~~t--~~~~~~~~~~~~~~ 162 (217)
T cd00331 107 --DEQLKELYELA----RELGMEV-------LVEVHDEE---------ELERALALGAKIIGIN--NRDLKTFEVDLNTT 162 (217)
T ss_pred --HHHHHHHHHHH----HHcCCeE-------EEEECCHH---------HHHHHHHcCCCEEEEe--CCCccccCcCHHHH
Confidence 57777777655 1234554 24444443 3667788999999999 56788889999999
Q ss_pred HHHhhc--CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcc
Q 021156 250 ALLGKY--SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNL 298 (316)
Q Consensus 250 ~~l~~~--~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~ 298 (316)
+++++. .++|++++|||++++|+.++++.| +++|+||+|+ |...-
T Consensus 163 ~~l~~~~~~~~pvia~gGI~s~edi~~~~~~G--a~gvivGsai--~~~~~ 209 (217)
T cd00331 163 ERLAPLIPKDVILVSESGISTPEDVKRLAEAG--ADAVLIGESL--MRAPD 209 (217)
T ss_pred HHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcC--CCEEEECHHH--cCCCC
Confidence 999876 478999999999999999999998 9999999999 86553
No 28
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=99.74 E-value=5e-18 Score=152.84 Aligned_cols=136 Identities=15% Similarity=0.197 Sum_probs=108.5
Q ss_pred CceeeecCCCCCCccccccccccCcccccccccEEEEE--EEeeCCe-EEEEEcccccCCCCCCCceeeecCCccCHHHH
Q 021156 22 SDLFWLHKNNNSSFYAPSSSLSRPSRLSVRCAVRFRPC--IDIHKGK-VKQIVGSTLQDSKDDGTKLVTNFESDKSAAEF 98 (316)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIP~--IDi~~G~-vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~ 98 (316)
.-+|++++|||+|+||+|+. ++|. +++++.++||+ |-+..|. |-++.+. .+.+ -++.++
T Consensus 76 l~~svlNs~~~~~iig~~~~-~~~~--~~~~~~e~ip~gYiv~~~~~~v~~v~~a-------------~~~p--~~~~~~ 137 (223)
T TIGR01768 76 FFPSVLNSDDPYWIIGAQIE-AAPK--FKKIGEEIIPEGYIIVNPGGAAARVTKA-------------KPIP--YDKEDL 137 (223)
T ss_pred EEEEeecCCCchHHHhHHHH-HHHH--HhhhcceecceEEEEECCCcceeecccc-------------cccC--CCcHHH
Confidence 45899999999999999999 8888 58888999998 6676665 4444322 1111 245568
Q ss_pred HHHHHHcC-CCcceEEEecCC----cccHHHHHHHHHh-C-CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156 99 ANLYKEDG-LTGGHAIMLGAD----PLSKAAAIEALHA-Y-PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQM 170 (316)
Q Consensus 99 a~~~~~~G-~~~l~lvDLda~----~~~~~~i~~~v~~-~-~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~~~~ 170 (316)
|..++.++ +.+++++||+++ .+.+.++++.+++ . ++|+++|||||+ |++++++++|||+||+||.++++
T Consensus 138 aa~~~lA~~~~g~~~vYlE~gs~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~d--- 214 (223)
T TIGR01768 138 AAYAAMAEEMLGMPIIYLEAGSGAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEED--- 214 (223)
T ss_pred HHHHHHHHHHcCCcEEEEEecCCCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhC---
Confidence 88888876 899999999954 3456667777764 5 799999999995 99999999999999999999998
Q ss_pred CHHHHHHHH
Q 021156 171 DLERLKDLV 179 (316)
Q Consensus 171 ~~eli~ei~ 179 (316)
|+++.+.+
T Consensus 215 -p~~~~~~v 222 (223)
T TIGR01768 215 -VDKALETI 222 (223)
T ss_pred -HHHHHHhh
Confidence 98887764
No 29
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=99.72 E-value=2.3e-17 Score=148.41 Aligned_cols=134 Identities=18% Similarity=0.214 Sum_probs=104.1
Q ss_pred CceeeecCCCCCCccccccccccCcccccc--cccEEEEE--EEeeCCe-EEEEEcccccCCCCCCCceeeecCCccCHH
Q 021156 22 SDLFWLHKNNNSSFYAPSSSLSRPSRLSVR--CAVRFRPC--IDIHKGK-VKQIVGSTLQDSKDDGTKLVTNFESDKSAA 96 (316)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iIP~--IDi~~G~-vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~ 96 (316)
.-+|++++|||+|++|+|+. ++|.. ++ ...++||+ |-+..|. |-++.+. .+ ..+|.
T Consensus 75 l~~svlns~n~~~i~g~~~~-~~~~~--~~~~~~~e~i~~gYiv~~~~~~v~~v~~a-------------~~---~~~~e 135 (219)
T cd02812 75 LFPSVLNSGDPYWIIGAQAE-AAPEV--GKIIPWLELIPEGYLVLNPDSTVARVTGA-------------KT---DLKPE 135 (219)
T ss_pred EEEeeecCCCchHHHHHHHH-HHHHh--ccccccccccceEEEEECCCCceeeeecc-------------Cc---CCCHH
Confidence 45899999999999999999 88884 55 88999998 6676665 4454332 11 24676
Q ss_pred HHHHHHHHcC-CCcceEEEecCC-cccHHHHHHHHH-hC-CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecCCCCC
Q 021156 97 EFANLYKEDG-LTGGHAIMLGAD-PLSKAAAIEALH-AY-PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQMD 171 (316)
Q Consensus 97 e~a~~~~~~G-~~~l~lvDLda~-~~~~~~i~~~v~-~~-~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~~~~~ 171 (316)
.+..|+.++ ..++|++|||.. ...+..+++.++ .. +.|+++|||||+ |++++++++|||+||+||.++++
T Consensus 136 -~~~ayA~aae~~g~~ivyLe~SG~~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~~---- 210 (219)
T cd02812 136 -DAAAYALAAEYLGMPIVYLEYSGAYGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEED---- 210 (219)
T ss_pred -HHHHHHHHHHHcCCeEEEeCCCCCcCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhCC----
Confidence 455566654 666999999943 234555666665 56 899999999995 99999999999999999999997
Q ss_pred HHHHHHHH
Q 021156 172 LERLKDLV 179 (316)
Q Consensus 172 ~eli~ei~ 179 (316)
|+++++++
T Consensus 211 p~~~~~~v 218 (219)
T cd02812 211 PNAALETV 218 (219)
T ss_pred HHHHHHHh
Confidence 99988875
No 30
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=99.71 E-value=2.9e-18 Score=154.75 Aligned_cols=138 Identities=20% Similarity=0.225 Sum_probs=102.1
Q ss_pred CCceeeecCCCCCCccccccccccCcccccccccEEEEE--EEeeCCeE-EEEEcccccCCCCCCCceeeecCCccCHHH
Q 021156 21 VSDLFWLHKNNNSSFYAPSSSLSRPSRLSVRCAVRFRPC--IDIHKGKV-KQIVGSTLQDSKDDGTKLVTNFESDKSAAE 97 (316)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIP~--IDi~~G~v-vr~~~g~~~~~~y~~~~~~~~~~~~~~p~e 97 (316)
-.-+|++++|||+|++|+|+. ++|. ++++..++||+ |-+..|.- -++.+. .+.+ -+..+
T Consensus 79 il~~svlNs~n~~~iig~~~~-aa~~--~~~~~~e~ip~gYivi~~g~~v~~v~~a-------------~pi~--~~~~~ 140 (230)
T PF01884_consen 79 ILFPSVLNSRNPYWIIGAQVE-AAPL--IKKLGLEVIPTGYIVINPGSKVARVTGA-------------RPIP--LDKPE 140 (230)
T ss_dssp EEEEEETTBSSTTTTTHHHHH-HHHH--CHHHHCCEEEEEEEEESTTSHHHHHTTB--------------------SHHH
T ss_pred EEEEEEecCCCcchHhhHHHH-HHHH--HHhhcceecceEEEEECCCCceEEeecc-------------eecC--CCcHH
Confidence 346899999999999999999 8888 58888999999 77766653 332211 1121 24557
Q ss_pred HHHHHHHcC-CCcceEEEecCC----cccHHHHHHHHHh-CCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156 98 FANLYKEDG-LTGGHAIMLGAD----PLSKAAAIEALHA-YPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQM 170 (316)
Q Consensus 98 ~a~~~~~~G-~~~l~lvDLda~----~~~~~~i~~~v~~-~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~~~~ 170 (316)
+|..++.++ +.++.++||+++ .+.++.+++.++. .+.|++||||||+ |++++++++|||.||+||.++++
T Consensus 141 iaa~~alA~~~~g~~~iYLEaGSGa~~~v~~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~--- 217 (230)
T PF01884_consen 141 IAAAAALAAEYLGMPIIYLEAGSGAYGPVPEEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEED--- 217 (230)
T ss_dssp HHHHHHHHHHHTT-SEEEEE--TTSSS-HHHHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHH---
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCCCCCCccHHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEc---
Confidence 888888766 999999999973 2345778887775 6899999999995 99999999999999999999997
Q ss_pred CHHHHHHHHHH
Q 021156 171 DLERLKDLVRV 181 (316)
Q Consensus 171 ~~eli~ei~~~ 181 (316)
++ ++++.+.
T Consensus 218 -~~-~e~~~~~ 226 (230)
T PF01884_consen 218 -PD-LEEALET 226 (230)
T ss_dssp -H--HHHHHTH
T ss_pred -ch-HHHHHHH
Confidence 64 5555543
No 31
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=99.67 E-value=2.4e-16 Score=143.10 Aligned_cols=137 Identities=16% Similarity=0.174 Sum_probs=106.7
Q ss_pred CceeeecCCCCCCccccccccccCcccccccccEEEEE--EEeeCCe-EEEEEcccccCCCCCCCceeeecCCccCHHHH
Q 021156 22 SDLFWLHKNNNSSFYAPSSSLSRPSRLSVRCAVRFRPC--IDIHKGK-VKQIVGSTLQDSKDDGTKLVTNFESDKSAAEF 98 (316)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIP~--IDi~~G~-vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~ 98 (316)
..+|++++|||+|+||+|++ ++|.+ +++.+++||+ |-+..|. |-++..+ ...++ ++.++
T Consensus 81 l~~svlNs~~~~~iig~~~~-~~~~~--~~~~le~ip~gYiv~~~~~~va~~~~~-----------~~~~~----~~~~~ 142 (232)
T PRK04169 81 LFPSVLNSRNPYWIIGAHVE-AAPII--KKGGLEVIPEGYIVLNPGSKVAVVGTA-----------APIPL----DKPDI 142 (232)
T ss_pred EEEEEecCCCcchHhhHHHH-HHHHH--hhcCcEECceEEEEECCCCeeeeeecc-----------ccCCC----ChHHH
Confidence 46899999999999999999 89984 8899999998 6676665 4442221 11333 56679
Q ss_pred HHHHHHcC-CCcceEEEecCC----cccHHHHHHHHH-hCCC-cEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156 99 ANLYKEDG-LTGGHAIMLGAD----PLSKAAAIEALH-AYPG-GLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQM 170 (316)
Q Consensus 99 a~~~~~~G-~~~l~lvDLda~----~~~~~~i~~~v~-~~~~-pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~~~~ 170 (316)
|..++.++ +.++.+++|+++ .+.+.++++.++ ..+. |+++|||||+ |++++++.+|||.||+||.+.+|
T Consensus 143 ~~~~~lA~~~~g~~~vYle~gs~~g~~~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~d--- 219 (232)
T PRK04169 143 AAYAALAAEYLGMPIVYLEYGGGAGDPVPPEMVKAVKKALDITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEED--- 219 (232)
T ss_pred HHHHHHHHHHcCCCeEEEECCCCCCCCCCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhhC---
Confidence 99888886 889999999954 234455656665 4777 9999999995 89999999999999999999998
Q ss_pred CHH-HHHHHHH
Q 021156 171 DLE-RLKDLVR 180 (316)
Q Consensus 171 ~~e-li~ei~~ 180 (316)
++ .++++.+
T Consensus 220 -~~~~~~~~~~ 229 (232)
T PRK04169 220 -PKKTVKAIKK 229 (232)
T ss_pred -HHHHHHHHHh
Confidence 66 5555543
No 32
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.8e-15 Score=144.11 Aligned_cols=131 Identities=19% Similarity=0.309 Sum_probs=111.0
Q ss_pred CCeeecCCCCCHHHHHHHHHHhcCceEE-EeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcc
Q 021156 161 TSYVFNNGQMDLERLKDLVRVVGKQRLV-LDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEG 239 (316)
Q Consensus 161 gt~~~~~~~~~~eli~ei~~~~G~~~Iv-vslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG 239 (316)
|+++.++ |+++.+++++. .+.+- +.+.+|+| -||.+.. ....++++.+++.|++.+.+|.+++..
T Consensus 113 Ga~Ll~~----p~lv~~iv~a~-~~av~~iPVTVKiR--------lG~d~~~-~~~~~ia~~~~~~g~~~ltVHgRtr~~ 178 (323)
T COG0042 113 GAALLKN----PELLAEIVKAM-VEAVGDIPVTVKIR--------LGWDDDD-ILALEIARILEDAGADALTVHGRTRAQ 178 (323)
T ss_pred chhhcCC----HHHHHHHHHHH-HHhhCCCCeEEEEe--------cccCccc-ccHHHHHHHHHhcCCCEEEEecccHHh
Confidence 8889997 99999999887 34442 55665533 4776543 457889999999999999999999999
Q ss_pred ccCCC-CHHHHHHHhhcCC-CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156 240 KKLGI-DDELVALLGKYSP-IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ 309 (316)
Q Consensus 240 ~~~G~-d~eli~~l~~~~~-iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~ 309 (316)
.+.|+ ||+.++++++.++ +|||++|+|.|.+|..++++.+ |++||||||++ |++||.+.++ ++...
T Consensus 179 ~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~t-g~DgVMigRga--~~nP~l~~~i-~~~~~ 246 (323)
T COG0042 179 GYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYT-GADGVMIGRGA--LGNPWLFRQI-DYLET 246 (323)
T ss_pred cCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhh-CCCEEEEcHHH--ccCCcHHHHH-HHhhc
Confidence 99987 9999999999888 9999999999999999999987 69999999999 9999998887 44443
No 33
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.63 E-value=3.5e-15 Score=138.06 Aligned_cols=117 Identities=21% Similarity=0.245 Sum_probs=106.1
Q ss_pred CceEEEeeeeeecCCeeEEEeCCcceec-ccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEE
Q 021156 184 KQRLVLDLSCRKKDGKYAIVTDRWQKFS-DVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTY 262 (316)
Q Consensus 184 ~~~IvvslD~k~~~g~~~v~~~gw~~~~-~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIa 262 (316)
..+|++++|++ +|+ .|++.+|.+.+ ..++.++++.+.+.|+++++++|++++++.+|+|+++++++++.+++||++
T Consensus 3 ~~~iipaiD~~--~G~-~V~~~~~~~~~~~~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~ 79 (258)
T PRK01033 3 RPRIIPCLLLK--DGG-LVKTVKFKDPRYIGDPINAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASECFMPLCY 79 (258)
T ss_pred CcEEEEEEEEE--CCc-EEEeecccCceeCCCHHHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHhCCCCEEE
Confidence 36899999998 886 89999998755 568999999999999999999999999999999999999999989999999
Q ss_pred EeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156 263 AGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH 307 (316)
Q Consensus 263 sGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~ 307 (316)
+||+++++|+.++++.| ++++++|+++ ++++-.++++.+..
T Consensus 80 gGGi~s~~d~~~l~~~G--~~~vvigs~~--~~~~~~~~~~~~~~ 120 (258)
T PRK01033 80 GGGIKTLEQAKKIFSLG--VEKVSINTAA--LEDPDLITEAAERF 120 (258)
T ss_pred CCCCCCHHHHHHHHHCC--CCEEEEChHH--hcCHHHHHHHHHHh
Confidence 99999999999999988 9999999999 99886666665544
No 34
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.63 E-value=2.9e-15 Score=142.76 Aligned_cols=133 Identities=13% Similarity=0.126 Sum_probs=110.4
Q ss_pred CCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccc
Q 021156 161 TSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGK 240 (316)
Q Consensus 161 gt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~ 240 (316)
|++..+| |+++.++.+.+ .+.+-+.+.+|. + .||... ..+..++++.+++.|++.+.+|.+++++.
T Consensus 111 Gs~ll~~----p~~~~eiv~av-~~a~d~pv~vKi-------R-~G~~~~-~~~~~~~a~~le~~G~d~i~vh~rt~~~~ 176 (321)
T PRK10415 111 GSALLQY----PDLVKSILTEV-VNAVDVPVTLKI-------R-TGWAPE-HRNCVEIAQLAEDCGIQALTIHGRTRACL 176 (321)
T ss_pred ccHHhcC----HHHHHHHHHHH-HHhcCCceEEEE-------E-ccccCC-cchHHHHHHHHHHhCCCEEEEecCccccc
Confidence 7888887 99999999887 333322333332 1 577642 33678999999999999999999999999
Q ss_pred cCC-CCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHhh
Q 021156 241 KLG-IDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQQ 310 (316)
Q Consensus 241 ~~G-~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~~ 310 (316)
+.| .||+.++++++.+++|||++|||.|.+|+.++++.+ |+++|++||++ +.+||.++++.+++...
T Consensus 177 ~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~-gadgVmiGR~~--l~nP~if~~~~~~~~~~ 244 (321)
T PRK10415 177 FNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYT-GADALMIGRAA--QGRPWIFREIQHYLDTG 244 (321)
T ss_pred cCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhcc-CCCEEEEChHh--hcCChHHHHHHHHHhCC
Confidence 988 599999999999999999999999999999999864 49999999999 99999999998776543
No 35
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=99.62 E-value=4.5e-15 Score=135.80 Aligned_cols=115 Identities=17% Similarity=0.248 Sum_probs=103.6
Q ss_pred eEEEeeeeeecCCeeEEEeCCcceec-ccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEe
Q 021156 186 RLVLDLSCRKKDGKYAIVTDRWQKFS-DVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAG 264 (316)
Q Consensus 186 ~IvvslD~k~~~g~~~v~~~gw~~~~-~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasG 264 (316)
+|++++|++ +|+ .|...+|.+.. ..++.++++.+++.|++++++||++++|+..|+|+++++++++.+++||+++|
T Consensus 2 ~ii~~iD~~--~g~-~v~~~~~~~~~~~~d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~G 78 (243)
T cd04731 2 RIIPCLDVK--DGR-VVKGVNFKNLRDAGDPVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGG 78 (243)
T ss_pred eEEEEEEEE--CCe-EEEeEccccceeCCCHHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeC
Confidence 789999998 886 66878888754 45899999999999999999999999999999999999999998999999999
Q ss_pred CCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156 265 GVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH 307 (316)
Q Consensus 265 GI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~ 307 (316)
||++.+|++++++.| +++|++|+++ +.++..+.++.+.+
T Consensus 79 GI~s~~d~~~~l~~G--~~~v~ig~~~--~~~p~~~~~i~~~~ 117 (243)
T cd04731 79 GIRSLEDARRLLRAG--ADKVSINSAA--VENPELIREIAKRF 117 (243)
T ss_pred CCCCHHHHHHHHHcC--CceEEECchh--hhChHHHHHHHHHc
Confidence 999999999999987 9999999999 99887777766544
No 36
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=99.62 E-value=1.3e-15 Score=135.99 Aligned_cols=123 Identities=14% Similarity=0.093 Sum_probs=92.7
Q ss_pred CceeeecCCCCCCccccccccccCcccccccccEEEEE--EEeeCCe-EEEEEcccccCCCCCCCceeeecCCccCHH--
Q 021156 22 SDLFWLHKNNNSSFYAPSSSLSRPSRLSVRCAVRFRPC--IDIHKGK-VKQIVGSTLQDSKDDGTKLVTNFESDKSAA-- 96 (316)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIP~--IDi~~G~-vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~-- 96 (316)
.-+|++++|||+|++|+|+. ++|. +++...++||+ |-+..|. |-++.+. .+.+ +.+|.
T Consensus 74 ~~~sllns~~~~~i~g~~~~-~~~~--~~~~~~e~ip~gYiv~~~~~~v~~v~~a-------------~~ip-~~~~e~~ 136 (205)
T TIGR01769 74 FFMSLLNSADTYFIVGAQIL-GAIT--ILKLNLEVIPMAYLIVGPGGAVGYVGKA-------------REIP-YNKPEIA 136 (205)
T ss_pred EEEEeecCCCcchhhhHHHH-HHHH--HHHcCCcccceEEEEECCCCceeeecCc-------------ccCC-CCCHHHH
Confidence 45899999999999999999 8988 58899999998 6677666 4443321 1121 12343
Q ss_pred -HHHHHHHHcCCCcceEEEecCCc-ccHHHHHHHHH-hCCCcEEEecCCCH-HHHHHHHHcCCCEEEeC
Q 021156 97 -EFANLYKEDGLTGGHAIMLGADP-LSKAAAIEALH-AYPGGLQVGGGINS-DNSLSYIEEGATHVIVT 161 (316)
Q Consensus 97 -e~a~~~~~~G~~~l~lvDLda~~-~~~~~i~~~v~-~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVig 161 (316)
++|..-+..|++++|+.|+++.. ..+..+++.++ .+++|+++|||||+ |++++++++|||.||+|
T Consensus 137 ~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 137 AAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 23333334689999999999873 45566666665 56899999999995 99999999999999997
No 37
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=99.55 E-value=4.2e-14 Score=130.54 Aligned_cols=115 Identities=19% Similarity=0.234 Sum_probs=101.7
Q ss_pred CceEEEeeeeeecCCeeEEEeCCccee---cccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcE
Q 021156 184 KQRLVLDLSCRKKDGKYAIVTDRWQKF---SDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPV 260 (316)
Q Consensus 184 ~~~IvvslD~k~~~g~~~v~~~gw~~~---~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPV 260 (316)
..+|++++|++ +|+ + +++|+.. ...++.++++.+.+.|++++.++|+++.++..+.|+++++++++.+++||
T Consensus 3 ~~~iip~iD~~--~G~--~-V~~~~~~~~~~~~dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv 77 (254)
T TIGR00735 3 AKRIIPCLDVR--DGR--V-VKGVQFLNLRDAGDPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAETVFIPL 77 (254)
T ss_pred CCeEEEEEEeE--CCE--E-EEeEeecCceECCCHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCE
Confidence 36899999998 884 5 6777632 23589999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156 261 TYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH 307 (316)
Q Consensus 261 IasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~ 307 (316)
+++|||+|.+|+++++..| +++|++|+++ ++++.-++++.+..
T Consensus 78 ~~~GGi~s~~d~~~~~~~G--a~~vivgt~~--~~~p~~~~~~~~~~ 120 (254)
T TIGR00735 78 TVGGGIKSIEDVDKLLRAG--ADKVSINTAA--VKNPELIYELADRF 120 (254)
T ss_pred EEECCCCCHHHHHHHHHcC--CCEEEEChhH--hhChHHHHHHHHHc
Confidence 9999999999999999998 9999999999 99887777776544
No 38
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=99.55 E-value=8e-14 Score=126.69 Aligned_cols=112 Identities=21% Similarity=0.220 Sum_probs=99.1
Q ss_pred CceEEEeeeeeecCCeeEEE---eCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcE
Q 021156 184 KQRLVLDLSCRKKDGKYAIV---TDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPV 260 (316)
Q Consensus 184 ~~~IvvslD~k~~~g~~~v~---~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPV 260 (316)
.++|++++|++ +|+ .|. ..+|+. ..++.+.++.+.+.|+++++++|++++|+..|+|++.++++++.+++||
T Consensus 3 ~~~ii~~iD~~--~g~-~V~~~~~~~~~~--~~dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~pv 77 (232)
T TIGR03572 3 KKRIIPCLLLK--DGR-LVKTVQFKDPRY--IGDPVNAARIYNAKGADELIVLDIDASKRGREPLFELISNLAEECFMPL 77 (232)
T ss_pred CceEEEEEEEE--CCe-EEEeeccCCCeE--CCCHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCCE
Confidence 36899999998 885 665 678874 3389999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156 261 TYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV 304 (316)
Q Consensus 261 IasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~ 304 (316)
+++||+++.+|+.++++.| +++|++|+++ ++++-.++++.
T Consensus 78 ~~~ggi~~~~d~~~~~~~G--~~~vilg~~~--l~~~~~~~~~~ 117 (232)
T TIGR03572 78 TVGGGIRSLEDAKKLLSLG--ADKVSINTAA--LENPDLIEEAA 117 (232)
T ss_pred EEECCCCCHHHHHHHHHcC--CCEEEEChhH--hcCHHHHHHHH
Confidence 9999999999999999988 9999999999 98764444444
No 39
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.54 E-value=6.9e-14 Score=127.22 Aligned_cols=101 Identities=22% Similarity=0.278 Sum_probs=88.7
Q ss_pred eEEEeeeeeecCCeeEE-EeCCcceecc--cCHHHHHHHHHHcCCCEEEEeecCCccccCC--CCHHHHHHHhhcCCCcE
Q 021156 186 RLVLDLSCRKKDGKYAI-VTDRWQKFSD--VYLDERVLDFLASYADEFLVHGVDVEGKKLG--IDDELVALLGKYSPIPV 260 (316)
Q Consensus 186 ~IvvslD~k~~~g~~~v-~~~gw~~~~~--~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G--~d~eli~~l~~~~~iPV 260 (316)
+|++++|++ +|+ .| .++||.+.+. .++.+.++.+.+. ++++++ +|.||+.+| +|+++++++.+.+++|+
T Consensus 3 rIip~iD~~--~G~-vVr~~~G~~~~~~~~~dp~~~a~~~~~~-~~~l~i--vDldga~~g~~~n~~~i~~i~~~~~~pv 76 (228)
T PRK04128 3 RIYPAIDLM--NGK-AVRLYKGRKEEVKVYGDPVEIALRFSEY-VDKIHV--VDLDGAFEGKPKNLDVVKNIIRETGLKV 76 (228)
T ss_pred EEEEEEEeE--CCE-EEEEEeccccCceECCCHHHHHHHHHHh-CCEEEE--EECcchhcCCcchHHHHHHHHhhCCCCE
Confidence 689999998 884 44 5799987544 3899999999998 999877 778898877 69999999999899999
Q ss_pred EEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156 261 TYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN 297 (316)
Q Consensus 261 IasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~ 297 (316)
+++|||+|.+|++++++.| +++|++|++. | ++
T Consensus 77 ~~gGGIrs~edv~~l~~~G--~~~vivGtaa--~-~~ 108 (228)
T PRK04128 77 QVGGGLRTYESIKDAYEIG--VENVIIGTKA--F-DL 108 (228)
T ss_pred EEcCCCCCHHHHHHHHHCC--CCEEEECchh--c-CH
Confidence 9999999999999999998 9999999999 8 53
No 40
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.51 E-value=3.1e-13 Score=128.70 Aligned_cols=164 Identities=15% Similarity=0.171 Sum_probs=125.5
Q ss_pred CcEEEecCCC--H-HHHHHHHHcCCCEEEeCCeeecC-------CC---CCHHHHHHHHHHhcCceEEEeeeeeecCCee
Q 021156 134 GGLQVGGGIN--S-DNSLSYIEEGATHVIVTSYVFNN-------GQ---MDLERLKDLVRVVGKQRLVLDLSCRKKDGKY 200 (316)
Q Consensus 134 ~pl~vGGGIr--~-e~~~~~l~~Gad~VVigt~~~~~-------~~---~~~eli~ei~~~~G~~~IvvslD~k~~~g~~ 200 (316)
+-+|++|.-- . +.++.+.++|+|-|=++...-.+ |. -+|+++.++.+.. ++.+-+.+.+|.+
T Consensus 65 ~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~v-r~~~~~pv~vKir---- 139 (319)
T TIGR00737 65 ISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAV-VDAVDIPVTVKIR---- 139 (319)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHH-HhhcCCCEEEEEE----
Confidence 3468888774 3 44777778899988774332111 11 1588888888887 4554455666522
Q ss_pred EEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhC
Q 021156 201 AIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAG 279 (316)
Q Consensus 201 ~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G 279 (316)
.||.+ ...+..++++.+++.|++.+.+|.++..+.+.|+ +|+.++++++.+++|||++|||.+.+|+.++++.+
T Consensus 140 ----~g~~~-~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~ 214 (319)
T TIGR00737 140 ----IGWDD-AHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETT 214 (319)
T ss_pred ----cccCC-CcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhh
Confidence 25643 2335779999999999999999998887777665 99999999999999999999999999999999655
Q ss_pred CCcCEEEEccchhhccCcccHHHHHHHHHhh
Q 021156 280 IGRVDVTVGSALDIFGGNLAYKDVVAWHAQQ 310 (316)
Q Consensus 280 ~g~~gVivG~Al~~~~g~~~~~~~~~~~~~~ 310 (316)
|+++|++||++ +.+|+.++++.+++..+
T Consensus 215 -gad~VmigR~~--l~~P~l~~~~~~~~~~~ 242 (319)
T TIGR00737 215 -GCDGVMIGRGA--LGNPWLFRQIEQYLTTG 242 (319)
T ss_pred -CCCEEEEChhh--hhCChHHHHHHHHHhCC
Confidence 59999999999 99999999887766543
No 41
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=99.51 E-value=2.2e-13 Score=123.62 Aligned_cols=113 Identities=19% Similarity=0.209 Sum_probs=97.0
Q ss_pred eEEEeeeeeecCCeeEEE-eCCcceec---ccCHHHHHHHHHHcCCCEEEEeecCCccccC--CCCHHHHHHHhhcCCCc
Q 021156 186 RLVLDLSCRKKDGKYAIV-TDRWQKFS---DVYLDERVLDFLASYADEFLVHGVDVEGKKL--GIDDELVALLGKYSPIP 259 (316)
Q Consensus 186 ~IvvslD~k~~~g~~~v~-~~gw~~~~---~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~--G~d~eli~~l~~~~~iP 259 (316)
+|++++|++ +|+ .|+ ++||.+.. ..++.+.++.+.+.|++++.++|+ ||+.+ ++|+++++++++.+++|
T Consensus 2 ~iip~iD~~--~g~-~v~~~~G~~~~~~~~~~~~~~~a~~~~~~g~~~i~v~dl--d~~~~g~~~~~~~i~~i~~~~~~p 76 (233)
T PRK00748 2 IIIPAIDLK--DGK-CVRLYQGDYDQATVYSDDPVAQAKAWEDQGAKWLHLVDL--DGAKAGKPVNLELIEAIVKAVDIP 76 (233)
T ss_pred eEEEEEEEE--CCe-EEEccccccccceEecCCHHHHHHHHHHcCCCEEEEEeC--CccccCCcccHHHHHHHHHHCCCC
Confidence 589999998 884 444 78998754 558999999999999999999998 46544 48999999999989999
Q ss_pred EEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156 260 VTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH 307 (316)
Q Consensus 260 VIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~ 307 (316)
|+++|||++.+|++++++.| +++|++|+++ ++++-.++++.+..
T Consensus 77 v~~~GGI~~~ed~~~~~~~G--a~~vilg~~~--l~~~~~l~ei~~~~ 120 (233)
T PRK00748 77 VQVGGGIRSLETVEALLDAG--VSRVIIGTAA--VKNPELVKEACKKF 120 (233)
T ss_pred EEEcCCcCCHHHHHHHHHcC--CCEEEECchH--HhCHHHHHHHHHHh
Confidence 99999999999999999998 9999999999 99876666665543
No 42
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.50 E-value=2.1e-13 Score=125.64 Aligned_cols=117 Identities=17% Similarity=0.215 Sum_probs=100.2
Q ss_pred CceEEEeeeeeecCCeeEEEeCCcce-ecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEE
Q 021156 184 KQRLVLDLSCRKKDGKYAIVTDRWQK-FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTY 262 (316)
Q Consensus 184 ~~~IvvslD~k~~~g~~~v~~~gw~~-~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIa 262 (316)
..+|++++|++ +|+ .|+.....+ ....++.++++.+.+.|++++.+||++++++..++|+++++++++.+++||++
T Consensus 3 ~~~iip~idl~--~g~-~V~~~~~~~~~~~~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~~ipv~~ 79 (253)
T PRK02083 3 AKRIIPCLDVK--DGR-VVKGVNFVNLRDAGDPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQVFIPLTV 79 (253)
T ss_pred CCeEEEEEEEE--CCE-EEEeEEecceeecCCHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHhCCCCEEe
Confidence 36899999998 885 554333221 22348999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156 263 AGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH 307 (316)
Q Consensus 263 sGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~ 307 (316)
+||+++.+|++++++.| +++|++|+++ +.++..++++.+..
T Consensus 80 ~GGi~s~~~~~~~l~~G--a~~Viigt~~--l~~p~~~~ei~~~~ 120 (253)
T PRK02083 80 GGGIRSVEDARRLLRAG--ADKVSINSAA--VANPELISEAADRF 120 (253)
T ss_pred eCCCCCHHHHHHHHHcC--CCEEEEChhH--hhCcHHHHHHHHHc
Confidence 99999999999999987 9999999999 99887777776554
No 43
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.50 E-value=1.7e-12 Score=117.17 Aligned_cols=196 Identities=17% Similarity=0.043 Sum_probs=127.3
Q ss_pred EeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEE--
Q 021156 61 DIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQ-- 137 (316)
Q Consensus 61 Di~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~-- 137 (316)
++++|-+|.+. . | +-+++.+..++.++|+.+.+.|+..+.+- . ...++.++ .+++|+.
T Consensus 2 ~~~~~~~~~~~-~------~----~~~~~~~~~~~~~~a~a~~~~G~~~~~~~-------~-~~~i~~i~~~~~~Pil~~ 62 (221)
T PRK01130 2 QLKGGLIVSCQ-A------L----PGEPLHSPEIMAAMALAAVQGGAVGIRAN-------G-VEDIKAIRAVVDVPIIGI 62 (221)
T ss_pred CcCCCEEEEec-C------C----CCCCCCCHHHHHHHHHHHHHCCCeEEEcC-------C-HHHHHHHHHhCCCCEEEE
Confidence 56788877753 1 1 11444434578899999999998776651 1 33444444 4667764
Q ss_pred -E-e-cC--C----CHHHHHHHHHcCCCEEEeCCeeecCC--CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCC
Q 021156 138 -V-G-GG--I----NSDNSLSYIEEGATHVIVTSYVFNNG--QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDR 206 (316)
Q Consensus 138 -v-G-GG--I----r~e~~~~~l~~Gad~VVigt~~~~~~--~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~g 206 (316)
. . .+ + ..++++.+.++|||.|+++.....++ +...++++++.+.. .+.+..++
T Consensus 63 ~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~---~i~vi~~v------------- 126 (221)
T PRK01130 63 IKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYP---GQLLMADC------------- 126 (221)
T ss_pred EecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC---CCeEEEeC-------------
Confidence 1 0 01 1 23679999999999988877654320 11133444443211 12222222
Q ss_pred cceecccCHHHHHHHHHHcCCCEEEEeecCCcc---ccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcC
Q 021156 207 WQKFSDVYLDERVLDFLASYADEFLVHGVDVEG---KKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRV 283 (316)
Q Consensus 207 w~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG---~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~ 283 (316)
...+.++.+.+.|++.+.++.....+ ...+.++++++++++.+++||+++|||++.+|+.++++.| ++
T Consensus 127 -------~t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~G--ad 197 (221)
T PRK01130 127 -------STLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKKALELG--AH 197 (221)
T ss_pred -------CCHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCC--CC
Confidence 12356788999999987654322222 2355689999999988899999999999999999999998 99
Q ss_pred EEEEccchhhccCcccHHH
Q 021156 284 DVTVGSALDIFGGNLAYKD 302 (316)
Q Consensus 284 gVivG~Al~~~~g~~~~~~ 302 (316)
+|++|+++ ..-....++
T Consensus 198 gV~iGsai--~~~~~~~~~ 214 (221)
T PRK01130 198 AVVVGGAI--TRPEEITKW 214 (221)
T ss_pred EEEEchHh--cCCHHHHHH
Confidence 99999999 754333333
No 44
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.48 E-value=4.9e-13 Score=120.88 Aligned_cols=155 Identities=19% Similarity=0.229 Sum_probs=118.4
Q ss_pred CCcEEEecCC-C-H-HHHHHHHHcCCCEEEeCCe--------------eecCCCCCHHHHHHHHHHhcCceEEEeeeeee
Q 021156 133 PGGLQVGGGI-N-S-DNSLSYIEEGATHVIVTSY--------------VFNNGQMDLERLKDLVRVVGKQRLVLDLSCRK 195 (316)
Q Consensus 133 ~~pl~vGGGI-r-~-e~~~~~l~~Gad~VVigt~--------------~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~ 195 (316)
++.+|++|+- . . +.++.+.++|+|.|-|+.. ..++ ++++.++.+++. +.+-+.+.+|.
T Consensus 56 p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~----~~~~~eii~~v~-~~~~~~v~vk~ 130 (231)
T cd02801 56 PLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKD----PELVAEIVRAVR-EAVPIPVTVKI 130 (231)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCC----HHHHHHHHHHHH-HhcCCCEEEEE
Confidence 4556788875 3 3 5577777889999987532 2334 888888888773 43333444432
Q ss_pred cCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcc-ccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHH
Q 021156 196 KDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEG-KKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEK 274 (316)
Q Consensus 196 ~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG-~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~ 274 (316)
+ .+|... .+..++++.+.+.|++.+.+|.++.++ ...+.+++.++++++.+++||+++|||.+.+|+.+
T Consensus 131 r--------~~~~~~--~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~ 200 (231)
T cd02801 131 R--------LGWDDE--EETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALR 200 (231)
T ss_pred e--------eccCCc--hHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHH
Confidence 1 245432 257789999999999999999988775 33456999999999999999999999999999999
Q ss_pred HHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156 275 IKVAGIGRVDVTVGSALDIFGGNLAYKDVVA 305 (316)
Q Consensus 275 l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~ 305 (316)
+++.+ ++++|++|+++ +.+|+.++++.+
T Consensus 201 ~l~~~-gad~V~igr~~--l~~P~~~~~~~~ 228 (231)
T cd02801 201 CLEQT-GVDGVMIGRGA--LGNPWLFREIKE 228 (231)
T ss_pred HHHhc-CCCEEEEcHHh--HhCCHHHHhhhh
Confidence 99985 49999999999 999988877654
No 45
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.46 E-value=7.4e-13 Score=125.72 Aligned_cols=158 Identities=16% Similarity=0.113 Sum_probs=119.7
Q ss_pred CCcEEEecCCC--H-HHHHHHHHcCCCEEEeCCeeec-----CC-----CCCHHHHHHHHHHhcCceE--EEeeeeeecC
Q 021156 133 PGGLQVGGGIN--S-DNSLSYIEEGATHVIVTSYVFN-----NG-----QMDLERLKDLVRVVGKQRL--VLDLSCRKKD 197 (316)
Q Consensus 133 ~~pl~vGGGIr--~-e~~~~~l~~Gad~VVigt~~~~-----~~-----~~~~eli~ei~~~~G~~~I--vvslD~k~~~ 197 (316)
++-+|+.|.-- . +.++.+.+.|+|.|=|+..... .| .-+|+++.++.+.. .+.+ -+.+.+|.+
T Consensus 64 p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~av-r~~~~~~~pVsvKiR- 141 (312)
T PRK10550 64 LVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM-REAVPAHLPVTVKVR- 141 (312)
T ss_pred cEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHH-HHhcCCCcceEEEEE-
Confidence 34578887763 3 4577777889888776533311 11 01488888887766 2322 134555421
Q ss_pred CeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC--CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHH
Q 021156 198 GKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI--DDELVALLGKYSPIPVTYAGGVTTMADLEKI 275 (316)
Q Consensus 198 g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~--d~eli~~l~~~~~iPVIasGGI~s~eDi~~l 275 (316)
.||.+.. ...++++.+++.|++.+.+|.+++.+.++|+ ||+.++++++.+++|||++|||.|.+|+.++
T Consensus 142 -------~g~~~~~--~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~ 212 (312)
T PRK10550 142 -------LGWDSGE--RKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQC 212 (312)
T ss_pred -------CCCCCch--HHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHH
Confidence 2675322 3679999999999999999999988888886 9999999999999999999999999999999
Q ss_pred HHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156 276 KVAGIGRVDVTVGSALDIFGGNLAYKDVV 304 (316)
Q Consensus 276 ~~~G~g~~gVivG~Al~~~~g~~~~~~~~ 304 (316)
++.+ |+++|||||++ +.+||.|+++.
T Consensus 213 l~~~-g~DgVmiGRg~--l~nP~lf~~~~ 238 (312)
T PRK10550 213 MAIT-GCDAVMIGRGA--LNIPNLSRVVK 238 (312)
T ss_pred Hhcc-CCCEEEEcHHh--HhCcHHHHHhh
Confidence 9876 69999999999 99999998764
No 46
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=99.45 E-value=6.1e-13 Score=118.69 Aligned_cols=119 Identities=18% Similarity=0.242 Sum_probs=101.1
Q ss_pred CceEEEeeeeeecCCeeEEEeCCcceecc-cCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEE
Q 021156 184 KQRLVLDLSCRKKDGKYAIVTDRWQKFSD-VYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTY 262 (316)
Q Consensus 184 ~~~IvvslD~k~~~g~~~v~~~gw~~~~~-~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIa 262 (316)
..||+++||++ +|+ .|+...+.+... =++.++++.+.+.|++|+++.||+..-..+.++++.+++.++.+.||+.+
T Consensus 3 ~kRIIPCLDVk--~Gr-VVKGv~F~~lrd~GDpVelA~~Y~e~GADElvFlDItAs~~gr~~~~~vv~r~A~~vfiPltV 79 (256)
T COG0107 3 AKRIIPCLDVK--DGR-VVKGVNFKNLRDAGDPVELAKRYNEEGADELVFLDITASSEGRETMLDVVERVAEQVFIPLTV 79 (256)
T ss_pred cceeEeeEEcc--CCE-EEecccccchhhcCChHHHHHHHHHcCCCeEEEEecccccccchhHHHHHHHHHhhceeeeEe
Confidence 36899999998 885 565555654211 17999999999999999999999988777889999999999999999999
Q ss_pred EeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156 263 AGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ 309 (316)
Q Consensus 263 sGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~ 309 (316)
+|||++.+|+.+++..| ++.|.|+++. ..+|-.+.++.+.+-.
T Consensus 80 GGGI~s~eD~~~ll~aG--ADKVSINsaA--v~~p~lI~~~a~~FGs 122 (256)
T COG0107 80 GGGIRSVEDARKLLRAG--ADKVSINSAA--VKDPELITEAADRFGS 122 (256)
T ss_pred cCCcCCHHHHHHHHHcC--CCeeeeChhH--hcChHHHHHHHHHhCC
Confidence 99999999999999999 8999999999 8888666666554433
No 47
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.44 E-value=8e-14 Score=132.21 Aligned_cols=125 Identities=20% Similarity=0.296 Sum_probs=91.9
Q ss_pred CCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccc
Q 021156 161 TSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGK 240 (316)
Q Consensus 161 gt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~ 240 (316)
|++..++ |+.+.++++.. .+.+-+.+.+|.+ -||.+ +..+..++++.+++.|++.+.+|.+++...
T Consensus 100 Ga~Ll~~----p~~~~~iv~~~-~~~~~~pvsvKiR--------~g~~~-~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~ 165 (309)
T PF01207_consen 100 GAALLKD----PDLLAEIVKAV-RKAVPIPVSVKIR--------LGWDD-SPEETIEFARILEDAGVSAITVHGRTRKQR 165 (309)
T ss_dssp GGGGGC-----HHHHHHHHHHH-HHH-SSEEEEEEE--------SECT---CHHHHHHHHHHHHTT--EEEEECS-TTCC
T ss_pred ChhhhcC----hHHhhHHHHhh-hcccccceEEecc--------ccccc-chhHHHHHHHHhhhcccceEEEecCchhhc
Confidence 5666666 88888888776 2333344444432 34542 223578999999999999999999999999
Q ss_pred cCCC-CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHH
Q 021156 241 KLGI-DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKD 302 (316)
Q Consensus 241 ~~G~-d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~ 302 (316)
++|+ ||+.++++++.+++|||++|||.|.+|+.++++.. |++||||||++ +.+||.|.+
T Consensus 166 ~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~t-g~dgvMigRga--l~nP~lf~~ 225 (309)
T PF01207_consen 166 YKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQT-GADGVMIGRGA--LGNPWLFRE 225 (309)
T ss_dssp CTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH--SSEEEESHHH--CC-CCHHCH
T ss_pred CCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhc-CCcEEEEchhh--hhcCHHhhh
Confidence 9887 99999999999999999999999999999999884 59999999999 999999986
No 48
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=99.44 E-value=7.1e-13 Score=118.62 Aligned_cols=140 Identities=16% Similarity=0.176 Sum_probs=108.7
Q ss_pred CCceeeecCCCCCCccccccccccCcccccccccEEEEE--EEe-eCCeEEEEEcccccCCCCCCCceeeecCCccCHHH
Q 021156 21 VSDLFWLHKNNNSSFYAPSSSLSRPSRLSVRCAVRFRPC--IDI-HKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAE 97 (316)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIP~--IDi-~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e 97 (316)
...+|++..+||.|.+|.|+. .+|. +.+..+++||. |=+ .+++|-++.+- ..+++ ++| +
T Consensus 90 vff~svLNS~n~~~i~gaq~~-~a~~--~~~~~~e~i~~gYiV~~p~~~va~v~~A-----------~~ip~---~~~-~ 151 (240)
T COG1646 90 VFFPSVLNSDNPYWIVGAQVE-GAKL--VGKLGLEVIPEGYIVVNPDGTVAWVGKA-----------KPIPL---DKE-D 151 (240)
T ss_pred EEEEEEecCCCcccccchhhh-hhHH--HHhhhheecceEEEEECCCCceeeeccc-----------ccCCC---CcH-H
Confidence 345799999999999999999 8888 58888999998 333 45566664321 11444 244 5
Q ss_pred HHHHHHHcC-CCcceEEEecCC----cccHHHHHHHHHhCCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecCCCCC
Q 021156 98 FANLYKEDG-LTGGHAIMLGAD----PLSKAAAIEALHAYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQMD 171 (316)
Q Consensus 98 ~a~~~~~~G-~~~l~lvDLda~----~~~~~~i~~~v~~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~~~~~ 171 (316)
+|..|+.++ +.++.++||+++ .+...++.+.+... .|++||||||+ |+++++.++|||.||+|+..+++
T Consensus 152 iaa~y~la~~~~g~~~~YlEagsga~~Pv~~e~v~~v~~~-~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~---- 226 (240)
T COG1646 152 IAAYYALAEKYLGMPVVYLEAGSGAGDPVPVEMVSRVLSD-TPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEED---- 226 (240)
T ss_pred HHHHHHHHHHHhCCeEEEEEecCCCCCCcCHHHHHHhhcc-ceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecC----
Confidence 888887766 999999999965 35566666655533 39999999995 99999999999999999999998
Q ss_pred HHHHHHHHHHhc
Q 021156 172 LERLKDLVRVVG 183 (316)
Q Consensus 172 ~eli~ei~~~~G 183 (316)
++.+.++.+.+.
T Consensus 227 ~~~~~~~v~~~k 238 (240)
T COG1646 227 PDKALETVEAIK 238 (240)
T ss_pred HHHHHHHHHHhh
Confidence 888888887763
No 49
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.42 E-value=1.5e-12 Score=124.66 Aligned_cols=130 Identities=18% Similarity=0.215 Sum_probs=102.5
Q ss_pred CCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcce-ecccCHHHHHHHHHHcCCCEEEEeecCC--
Q 021156 161 TSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQK-FSDVYLDERVLDFLASYADEFLVHGVDV-- 237 (316)
Q Consensus 161 gt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~-~~~~~~~e~a~~~~~~Ga~~ilvtdi~~-- 237 (316)
|+...++ |+++.++.+.+ ++.+.+.+++|.+ + +|.. .+..++.++++.+++.|++.+.+|.++.
T Consensus 111 Gs~L~~~----p~~~~eiv~av-r~~v~~pVsvKiR-----~---g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~ 177 (333)
T PRK11815 111 GACLMAE----PELVADCVKAM-KDAVSIPVTVKHR-----I---GIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWL 177 (333)
T ss_pred eeHHhcC----HHHHHHHHHHH-HHHcCCceEEEEE-----e---eeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhh
Confidence 6777787 99999999998 4666678888732 2 3322 1223567899999999999999997653
Q ss_pred cccc-------CCCCHHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156 238 EGKK-------LGIDDELVALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA 308 (316)
Q Consensus 238 dG~~-------~G~d~eli~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~ 308 (316)
.|.. ...+|+.++++++.+ ++|||++|||.|++|+.++++ + +++|||||++ +.+||.++++.++..
T Consensus 178 ~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~--aDgVmIGRa~--l~nP~~~~~~~~~~~ 251 (333)
T PRK11815 178 KGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-H--VDGVMIGRAA--YHNPYLLAEVDRELF 251 (333)
T ss_pred cCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-c--CCEEEEcHHH--HhCCHHHHHHHHHhc
Confidence 2211 123799999998874 899999999999999999997 5 9999999999 999999999876554
No 50
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.39 E-value=4.8e-12 Score=120.48 Aligned_cols=158 Identities=15% Similarity=0.150 Sum_probs=116.6
Q ss_pred CCcEEEecCCC--H-HHHHHHHHcCCCEEEeC--------------CeeecCCCCCHHHHHHHHHHhcCceEEEeeeeee
Q 021156 133 PGGLQVGGGIN--S-DNSLSYIEEGATHVIVT--------------SYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRK 195 (316)
Q Consensus 133 ~~pl~vGGGIr--~-e~~~~~l~~Gad~VVig--------------t~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~ 195 (316)
++-+|++|+-- . +-++.+-+.|+|.|=|+ +...+ +|+++.++++.. .+.+-+.+.+|.
T Consensus 56 p~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~----~p~~~~~iv~av-~~~~~~PVsvKi 130 (318)
T TIGR00742 56 PVALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMG----NADLVADCVKAM-QEAVNIPVTVKH 130 (318)
T ss_pred cEEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhc----CHHHHHHHHHHH-HHHhCCCeEEEE
Confidence 34578888773 3 44555556788776553 34444 489999998887 344334455542
Q ss_pred cCCeeEEEeCCccee-cccCHHHHHHHHHHcCCCEEEEeecCC-ccccCC-------C-CHHHHHHHhhcC-CCcEEEEe
Q 021156 196 KDGKYAIVTDRWQKF-SDVYLDERVLDFLASYADEFLVHGVDV-EGKKLG-------I-DDELVALLGKYS-PIPVTYAG 264 (316)
Q Consensus 196 ~~g~~~v~~~gw~~~-~~~~~~e~a~~~~~~Ga~~ilvtdi~~-dG~~~G-------~-d~eli~~l~~~~-~iPVIasG 264 (316)
+ -||... +..+..++++.+++.|++.+.+|.+++ .+.++| + ||+.++++++.+ ++|||++|
T Consensus 131 R--------~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NG 202 (318)
T TIGR00742 131 R--------IGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEING 202 (318)
T ss_pred e--------cCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEEC
Confidence 2 256432 112467889999999999999999986 222333 2 899999998876 89999999
Q ss_pred CCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156 265 GVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA 308 (316)
Q Consensus 265 GI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~ 308 (316)
||.|.+|+.+.+. | +++|||||++ +.+||.|.++.+++.
T Consensus 203 dI~s~~da~~~l~-g--~dgVMigRga--l~nP~if~~~~~~l~ 241 (318)
T TIGR00742 203 GIKNSEQIKQHLS-H--VDGVMVGREA--YENPYLLANVDREIF 241 (318)
T ss_pred CcCCHHHHHHHHh-C--CCEEEECHHH--HhCCHHHHHHHHHhc
Confidence 9999999999996 6 9999999999 999999999977654
No 51
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=99.36 E-value=2.7e-12 Score=112.10 Aligned_cols=169 Identities=19% Similarity=0.124 Sum_probs=110.3
Q ss_pred HHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEEE-------ecCC--C--HHHHHHHHHcCCCEEEeCCeee
Q 021156 98 FANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQV-------GGGI--N--SDNSLSYIEEGATHVIVTSYVF 165 (316)
Q Consensus 98 ~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~v-------GGGI--r--~e~~~~~l~~Gad~VVigt~~~ 165 (316)
+|+.-..-|+.++. .+..+-++.++ .+++|++- +.++ . .++++.+.++||+.|.++.+.+
T Consensus 4 mA~Aa~~gGA~giR--------~~~~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R 75 (192)
T PF04131_consen 4 MAKAAEEGGAVGIR--------ANGVEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDR 75 (192)
T ss_dssp HHHHHHHCT-SEEE--------EESHHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSS
T ss_pred HHHHHHHCCceEEE--------cCCHHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCC
Confidence 55555555655332 23344445555 57788752 2344 3 3899999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEe--ecCCccccCC
Q 021156 166 NNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVH--GVDVEGKKLG 243 (316)
Q Consensus 166 ~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvt--di~~dG~~~G 243 (316)
.+++...+++.++.++| ..+.-|+. .+|.+....++|++.+--| .-+.+....+
T Consensus 76 ~Rp~~l~~li~~i~~~~----~l~MADis--------------------t~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~ 131 (192)
T PF04131_consen 76 PRPETLEELIREIKEKY----QLVMADIS--------------------TLEEAINAAELGFDIIGTTLSGYTPYTKGDG 131 (192)
T ss_dssp S-SS-HHHHHHHHHHCT----SEEEEE-S--------------------SHHHHHHHHHTT-SEEE-TTTTSSTTSTTSS
T ss_pred CCCcCHHHHHHHHHHhC----cEEeeecC--------------------CHHHHHHHHHcCCCEEEcccccCCCCCCCCC
Confidence 88644457777777766 35666763 3578899999999977421 1122222288
Q ss_pred CCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156 244 IDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH 307 (316)
Q Consensus 244 ~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~ 307 (316)
||+++++++.+. ++|||+.|++++++++.++++.| +++|+||+|+ ++| +.+.+|+
T Consensus 132 pD~~lv~~l~~~-~~pvIaEGri~tpe~a~~al~~G--A~aVVVGsAI---TrP---~~It~~F 186 (192)
T PF04131_consen 132 PDFELVRELVQA-DVPVIAEGRIHTPEQAAKALELG--AHAVVVGSAI---TRP---QEITKRF 186 (192)
T ss_dssp HHHHHHHHHHHT-TSEEEEESS--SHHHHHHHHHTT---SEEEE-HHH---H-H---HHHHHHH
T ss_pred CCHHHHHHHHhC-CCcEeecCCCCCHHHHHHHHhcC--CeEEEECccc---CCH---HHHHHHH
Confidence 999999999876 89999999999999999999999 9999999999 554 4444443
No 52
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=5.7e-12 Score=119.22 Aligned_cols=121 Identities=20% Similarity=0.208 Sum_probs=99.0
Q ss_pred CCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccc
Q 021156 161 TSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGK 240 (316)
Q Consensus 161 gt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~ 240 (316)
|+.+..+ |+++.++++.. ...+-+.+.+|++ +..- .-+..+.++.+++.|++.+.+|+++++..
T Consensus 119 Ga~L~~~----~eLv~e~V~~v-~~~l~~pVs~KIR-------I~~d----~~kTvd~ak~~e~aG~~~ltVHGRtr~~k 182 (358)
T KOG2335|consen 119 GAFLMDN----PELVGEMVSAV-RANLNVPVSVKIR-------IFVD----LEKTVDYAKMLEDAGVSLLTVHGRTREQK 182 (358)
T ss_pred cceeccC----HHHHHHHHHHH-HhhcCCCeEEEEE-------ecCc----HHHHHHHHHHHHhCCCcEEEEecccHHhc
Confidence 5666665 99999999887 3555555666542 2211 12467999999999999999999999866
Q ss_pred c--CCC-CHHHHHHHhhcCC-CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccH
Q 021156 241 K--LGI-DDELVALLGKYSP-IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAY 300 (316)
Q Consensus 241 ~--~G~-d~eli~~l~~~~~-iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~ 300 (316)
. .|+ ||+.++.+++... +|||++|+|.+.+|+.++++.. |++|||+|+++ +.||+.|
T Consensus 183 g~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~t-G~dGVM~argl--L~NPa~F 243 (358)
T KOG2335|consen 183 GLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYT-GADGVMSARGL--LYNPALF 243 (358)
T ss_pred CCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHh-CCceEEecchh--hcCchhh
Confidence 5 677 9999999998776 9999999999999999999965 59999999999 9999887
No 53
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=99.34 E-value=1.8e-11 Score=112.15 Aligned_cols=113 Identities=20% Similarity=0.183 Sum_probs=95.1
Q ss_pred eEEEeeeeeecCCeeEEEeCCcc----eecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEE
Q 021156 186 RLVLDLSCRKKDGKYAIVTDRWQ----KFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVT 261 (316)
Q Consensus 186 ~IvvslD~k~~~g~~~v~~~gw~----~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVI 261 (316)
+|++++|++ +|+ .|+...+. ...+ ++.+.++.+.+.|++++.+.|++... ..+.|.++++++.+.+++|++
T Consensus 5 ~iIP~idl~--~G~-~V~~~~g~~~~~~~~~-dp~~~a~~~~~~g~~~l~ivDLd~~~-g~~~n~~~i~~i~~~~~~pv~ 79 (241)
T PRK14024 5 TLLPAVDVV--DGQ-AVRLVQGEAGSETSYG-SPLDAALAWQRDGAEWIHLVDLDAAF-GRGSNRELLAEVVGKLDVKVE 79 (241)
T ss_pred EEEEEEEeE--CCE-EEEeecccccCceECC-CHHHHHHHHHHCCCCEEEEEeccccC-CCCccHHHHHHHHHHcCCCEE
Confidence 799999998 886 77665554 2333 89999999999999999888887653 567799999999999999999
Q ss_pred EEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156 262 YAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH 307 (316)
Q Consensus 262 asGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~ 307 (316)
++|||+|.||++++++.| ++.+++|+++ ++++=.++++.+..
T Consensus 80 vgGGirs~edv~~~l~~G--a~kvviGs~~--l~~p~l~~~i~~~~ 121 (241)
T PRK14024 80 LSGGIRDDESLEAALATG--CARVNIGTAA--LENPEWCARVIAEH 121 (241)
T ss_pred EcCCCCCHHHHHHHHHCC--CCEEEECchH--hCCHHHHHHHHHHh
Confidence 999999999999999998 9999999999 98765566665433
No 54
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=99.33 E-value=2.2e-11 Score=110.26 Aligned_cols=113 Identities=21% Similarity=0.241 Sum_probs=96.7
Q ss_pred eEEEeeeeeecCCeeEEEeCCcce----ecccCHHHHHHHHHHcCCCEEEEeecCCccccCC-C-CHHHHHHHhhcCCCc
Q 021156 186 RLVLDLSCRKKDGKYAIVTDRWQK----FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLG-I-DDELVALLGKYSPIP 259 (316)
Q Consensus 186 ~IvvslD~k~~~g~~~v~~~gw~~----~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G-~-d~eli~~l~~~~~iP 259 (316)
.|++++|++ +|+ .|+..+++. ....+|.+.++.+.+.|+.. +|-+|.||...| + |.++++++.+.+++|
T Consensus 3 ~iiPAIDl~--~G~-~VRL~qGd~~~~~~y~~~P~~~a~~~~~~Ga~~--lHlVDLdgA~~g~~~n~~~i~~i~~~~~~~ 77 (241)
T COG0106 3 IIIPAIDLK--DGK-VVRLVQGDYGKETVYSDDPLEVAKKWSDQGAEW--LHLVDLDGAKAGGPRNLEAIKEILEATDVP 77 (241)
T ss_pred eEEEeEEee--CCE-EEEeecccCCcceEecCCHHHHHHHHHHcCCcE--EEEeeccccccCCcccHHHHHHHHHhCCCC
Confidence 478999998 897 888766642 23458999999999999995 599999999844 3 889999999999999
Q ss_pred EEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHhh
Q 021156 260 VTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQQ 310 (316)
Q Consensus 260 VIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~~ 310 (316)
|..+|||+|.++++++++.| +..|++|++. +++ ++.+.++++++
T Consensus 78 vQvGGGIRs~~~v~~ll~~G--~~rViiGt~a--v~~---p~~v~~~~~~~ 121 (241)
T COG0106 78 VQVGGGIRSLEDVEALLDAG--VARVIIGTAA--VKN---PDLVKELCEEY 121 (241)
T ss_pred EEeeCCcCCHHHHHHHHHCC--CCEEEEecce--ecC---HHHHHHHHHHc
Confidence 99999999999999999998 9999999999 886 45566667665
No 55
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=99.30 E-value=4e-11 Score=108.70 Aligned_cols=113 Identities=17% Similarity=0.188 Sum_probs=92.1
Q ss_pred EEEeeeeeecCCeeEEE-eCCcceec---ccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEE
Q 021156 187 LVLDLSCRKKDGKYAIV-TDRWQKFS---DVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTY 262 (316)
Q Consensus 187 IvvslD~k~~~g~~~v~-~~gw~~~~---~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIa 262 (316)
|++++|++ +|+ .|+ ..||.+.. ..++.+.++.+.+.|++++.+.|.+...+..+.|+++++++++.+++|+++
T Consensus 1 iip~id~~--~g~-~v~~~~G~~~~~~~~~~dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~~~pi~~ 77 (230)
T TIGR00007 1 IIPAIDIK--DGK-CVRLYQGDYDKETVYGDDPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRETGVPVQV 77 (230)
T ss_pred CEeEEEee--CCE-EEEeeccccCcceEecCCHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhcCCCEEE
Confidence 57999998 885 554 56887543 458999999999999999988766654445556999999999989999999
Q ss_pred EeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHH
Q 021156 263 AGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAW 306 (316)
Q Consensus 263 sGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~ 306 (316)
+|||++.+|++++++.| ++.|++|+++ ++++-.+.++.+.
T Consensus 78 ggGI~~~ed~~~~~~~G--a~~vvlgs~~--l~d~~~~~~~~~~ 117 (230)
T TIGR00007 78 GGGIRSLEDVEKLLDLG--VDRVIIGTAA--VENPDLVKELLKE 117 (230)
T ss_pred eCCcCCHHHHHHHHHcC--CCEEEEChHH--hhCHHHHHHHHHH
Confidence 99999999999999998 9999999999 8765444444433
No 56
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=99.27 E-value=7.3e-11 Score=107.05 Aligned_cols=115 Identities=19% Similarity=0.182 Sum_probs=95.1
Q ss_pred eEEEeeeeeecCCeeEEEe-CCcce---ecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEE
Q 021156 186 RLVLDLSCRKKDGKYAIVT-DRWQK---FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVT 261 (316)
Q Consensus 186 ~IvvslD~k~~~g~~~v~~-~gw~~---~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVI 261 (316)
.|+++||++ +|+ .|+. .|+.. ....++.+.++.+.+.|++++.++|+++..+..+.|+++++++++.+++|++
T Consensus 1 ~iip~idl~--~g~-~v~~~~G~~~~~~~~~~dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~ 77 (234)
T cd04732 1 IIIPAIDLK--DGK-CVRLYQGDYDKKTVYSDDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQ 77 (234)
T ss_pred CEEEEEEeE--CCE-EEEeecccCCCCeEECCCHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEE
Confidence 378999998 885 5554 34432 2234899999999999999999998887545577899999999998899999
Q ss_pred EEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156 262 YAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH 307 (316)
Q Consensus 262 asGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~ 307 (316)
++|||+++++++++++.| ++.|++|+++ ++.+..++++.+.+
T Consensus 78 ~~GgI~~~e~~~~~~~~G--ad~vvigs~~--l~dp~~~~~i~~~~ 119 (234)
T cd04732 78 VGGGIRSLEDIERLLDLG--VSRVIIGTAA--VKNPELVKELLKEY 119 (234)
T ss_pred EeCCcCCHHHHHHHHHcC--CCEEEECchH--HhChHHHHHHHHHc
Confidence 999999999999999988 9999999999 88776666665543
No 57
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.26 E-value=7.3e-11 Score=107.80 Aligned_cols=113 Identities=10% Similarity=0.063 Sum_probs=91.7
Q ss_pred eEEEeeeeeecCCeeEEEeCCcce----ecccCHHHHHHHHHH-cCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcE
Q 021156 186 RLVLDLSCRKKDGKYAIVTDRWQK----FSDVYLDERVLDFLA-SYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPV 260 (316)
Q Consensus 186 ~IvvslD~k~~~g~~~v~~~gw~~----~~~~~~~e~a~~~~~-~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPV 260 (316)
+|++++|++ +|+ .|+...+.. ...-++.+.++.+.+ .|++++.+-|++..-.....|+++++++++.+++|+
T Consensus 3 ~iiPaIDl~--~G~-~Vr~~~G~~~~~~~~~~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi 79 (234)
T PRK13587 3 ELWPAIDLI--GST-SVRLTEGKYDSEEKMSRSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDI 79 (234)
T ss_pred EEEEEEEcc--CCE-EEEcCcccCCCceEeCCCHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeE
Confidence 589999998 886 777755532 223378999999999 699999777766443345569999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156 261 TYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA 305 (316)
Q Consensus 261 IasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~ 305 (316)
+++|||+|.+|++++++.| ++.|++|++. ++++--++++.+
T Consensus 80 ~vGGGIrs~e~v~~~l~~G--a~kvvigt~a--~~~~~~l~~~~~ 120 (234)
T PRK13587 80 EVGGGIRTKSQIMDYFAAG--INYCIVGTKG--IQDTDWLKEMAH 120 (234)
T ss_pred EEcCCcCCHHHHHHHHHCC--CCEEEECchH--hcCHHHHHHHHH
Confidence 9999999999999999998 9999999999 887644555543
No 58
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=99.25 E-value=3e-11 Score=109.97 Aligned_cols=115 Identities=20% Similarity=0.302 Sum_probs=92.9
Q ss_pred eEEEeeeeeecCCeeEEEeCCcce----ecccCHHHHHHHHHHcCCCEEEEeecCCcccc--CCCCHHHHHHHhhcCCCc
Q 021156 186 RLVLDLSCRKKDGKYAIVTDRWQK----FSDVYLDERVLDFLASYADEFLVHGVDVEGKK--LGIDDELVALLGKYSPIP 259 (316)
Q Consensus 186 ~IvvslD~k~~~g~~~v~~~gw~~----~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~--~G~d~eli~~l~~~~~iP 259 (316)
+|++++|++ +|+ .|+...+.. ...-+|.+.++.+.+.|++++.+.|++ +.. .+.|+++++++++.+.+|
T Consensus 1 ~iiP~iDl~--~G~-~Vr~~~G~~~~~~~~~~dP~~~a~~~~~~g~~~l~ivDLd--aa~~g~~~n~~~i~~i~~~~~~~ 75 (229)
T PF00977_consen 1 RIIPAIDLK--NGR-VVRLVKGDRFSETVYSGDPVEVAKAFNEQGADELHIVDLD--AAKEGRGSNLELIKEIAKETGIP 75 (229)
T ss_dssp EEEEEEEEE--TTE-EEEESTTCCSCEECECCCHHHHHHHHHHTT-SEEEEEEHH--HHCCTHHHHHHHHHHHHHHSSSE
T ss_pred CEEEEEEEE--CCE-EEECCCeecceeeEECcCHHHHHHHHHHcCCCEEEEEEcc--CcccCchhHHHHHHHHHhcCCcc
Confidence 589999998 886 776655543 234589999999999999999777765 454 345899999999999999
Q ss_pred EEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156 260 VTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ 309 (316)
Q Consensus 260 VIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~ 309 (316)
++++|||++.+|++++++.| ++.|++|++. ++++-.++++.+....
T Consensus 76 i~vgGGIrs~ed~~~ll~~G--a~~Vvigt~~--~~~~~~l~~~~~~~g~ 121 (229)
T PF00977_consen 76 IQVGGGIRSIEDAERLLDAG--ADRVVIGTEA--LEDPELLEELAERYGS 121 (229)
T ss_dssp EEEESSE-SHHHHHHHHHTT---SEEEESHHH--HHCCHHHHHHHHHHGG
T ss_pred EEEeCccCcHHHHHHHHHhC--CCEEEeChHH--hhchhHHHHHHHHcCc
Confidence 99999999999999999999 9999999999 9988777777665444
No 59
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=99.24 E-value=9.3e-10 Score=99.25 Aligned_cols=173 Identities=19% Similarity=0.068 Sum_probs=115.0
Q ss_pred ecCCccCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEEE----ec---C--C--CHHHHHHHHHcCC
Q 021156 88 NFESDKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQV----GG---G--I--NSDNSLSYIEEGA 155 (316)
Q Consensus 88 ~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~v----GG---G--I--r~e~~~~~l~~Ga 155 (316)
++....++.++|+.+.+.|+..+- . +....++.++ ..++|+.. +- . | ..++++.+.++||
T Consensus 22 ~~~~~~~i~~~a~~~~~~G~~~~~---~-----~~~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGa 93 (219)
T cd04729 22 PLHSPEIMAAMALAAVQGGAVGIR---A-----NGVEDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGA 93 (219)
T ss_pred CcCcHHHHHHHHHHHHHCCCeEEE---c-----CCHHHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCC
Confidence 343234678999999999976432 1 2223444444 36778752 21 1 1 2468999999999
Q ss_pred CEEEeCCeeecCC--CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEe
Q 021156 156 THVIVTSYVFNNG--QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVH 233 (316)
Q Consensus 156 d~VVigt~~~~~~--~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvt 233 (316)
+.|++......++ +...++++++.+.. . +.+.+++. ..+.+..+.+.|++.+.++
T Consensus 94 d~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~--~~iiv~v~--------------------t~~ea~~a~~~G~d~i~~~ 150 (219)
T cd04729 94 DIIALDATDRPRPDGETLAELIKRIHEEY-N--CLLMADIS--------------------TLEEALNAAKLGFDIIGTT 150 (219)
T ss_pred CEEEEeCCCCCCCCCcCHHHHHHHHHHHh-C--CeEEEECC--------------------CHHHHHHHHHcCCCEEEcc
Confidence 9998876554321 11234555554433 1 22222321 1255688889999987653
Q ss_pred ecCCcc---ccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156 234 GVDVEG---KKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG 295 (316)
Q Consensus 234 di~~dG---~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~ 295 (316)
.....+ ...+++++.++++++.+++|++++|||++.+|+.++++.| +++|++|+++ +.
T Consensus 151 ~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~G--adgV~vGsal--~~ 211 (219)
T cd04729 151 LSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELG--ADAVVVGSAI--TR 211 (219)
T ss_pred CccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCC--CCEEEEchHH--hC
Confidence 332222 1346789999999988899999999999999999999998 9999999999 64
No 60
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.24 E-value=4.6e-10 Score=102.18 Aligned_cols=182 Identities=15% Similarity=0.081 Sum_probs=118.2
Q ss_pred HHHHHHHHHHcCCCcceEEEecCCcc-cHHHHHHHHHhCCCcEEEecCCC-H---HHHHHHHHcCCCEEEeCCeeecC--
Q 021156 95 AAEFANLYKEDGLTGGHAIMLGADPL-SKAAAIEALHAYPGGLQVGGGIN-S---DNSLSYIEEGATHVIVTSYVFNN-- 167 (316)
Q Consensus 95 p~e~a~~~~~~G~~~l~lvDLda~~~-~~~~i~~~v~~~~~pl~vGGGIr-~---e~~~~~l~~Gad~VVigt~~~~~-- 167 (316)
-.+.++...+.|-++. +.|++.-.. ...++ ..++ ...|+.+-=|-. . .++-+.++.+++.+=|++.....
T Consensus 31 t~~a~~~~~~rgr~ef-~~~~e~~~~~i~~e~-~~~~-~~~~vivnv~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v 107 (231)
T TIGR00736 31 TYKASRDIEKRGRKEF-SFNLEEFNSYIIEQI-KKAE-SRALVSVNVRFVDLEEAYDVLLTIAEHADIIEINAHCRQPEI 107 (231)
T ss_pred HHHHHHHHHHcCCccc-CcCcccHHHHHHHHH-HHHh-hcCCEEEEEecCCHHHHHHHHHHHhcCCCEEEEECCCCcHHH
Confidence 3456777888886664 455433111 11122 2222 234554443332 2 33444456688887775443221
Q ss_pred -----CC---CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcc
Q 021156 168 -----GQ---MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEG 239 (316)
Q Consensus 168 -----~~---~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG 239 (316)
|. -+|+++.++.+... + .-+.+.+|.+ -+|. ..+..++++.+++.|++.+.+|.... |
T Consensus 108 ~~~g~G~~Ll~dp~~l~~iv~av~-~-~~~PVsvKiR--------~~~~---~~~~~~~a~~l~~aGad~i~Vd~~~~-g 173 (231)
T TIGR00736 108 TEIGIGQELLKNKELLKEFLTKMK-E-LNKPIFVKIR--------GNCI---PLDELIDALNLVDDGFDGIHVDAMYP-G 173 (231)
T ss_pred cCCCCchhhcCCHHHHHHHHHHHH-c-CCCcEEEEeC--------CCCC---cchHHHHHHHHHHcCCCEEEEeeCCC-C
Confidence 10 14999999998873 2 2234544422 1232 23578999999999999998864321 1
Q ss_pred ccCC-CCHHHHHHHhhcCC-CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCccc
Q 021156 240 KKLG-IDDELVALLGKYSP-IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLA 299 (316)
Q Consensus 240 ~~~G-~d~eli~~l~~~~~-iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~ 299 (316)
.+ .||+.++++++.++ +|||++|||.|.+|+.++++.| +++|+|||++ +.|++.
T Consensus 174 --~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~G--Ad~VmvgR~~--l~~~~~ 229 (231)
T TIGR00736 174 --KPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAG--ADFVSVARAI--LKGNVE 229 (231)
T ss_pred --CchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhC--CCeEEEcHhh--ccCCcC
Confidence 12 49999999999874 9999999999999999999987 9999999999 988764
No 61
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=99.24 E-value=1.4e-09 Score=100.95 Aligned_cols=181 Identities=18% Similarity=0.123 Sum_probs=123.9
Q ss_pred ccCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156 92 DKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQ 169 (316)
Q Consensus 92 ~~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~ 169 (316)
..+|.++|+.|.+.|+..+.+.-=..-...+...++.++ .+++|+..=-=|. ..++..++++|||.|.+....+.
T Consensus 69 ~~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~--- 145 (260)
T PRK00278 69 DFDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAVSLPVLRKDFIIDPYQIYEARAAGADAILLIVAALD--- 145 (260)
T ss_pred CCCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhcCCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCC---
Confidence 358999999999999988754211111122333444444 5889998633233 47899999999999999887765
Q ss_pred CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHH
Q 021156 170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELV 249 (316)
Q Consensus 170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli 249 (316)
++.++++.+..-.-..-+-+|+. + .+.++++.+.|++-+-+|.++.. ...+|++..
T Consensus 146 --~~~l~~li~~a~~lGl~~lvevh-------------------~-~~E~~~A~~~gadiIgin~rdl~--~~~~d~~~~ 201 (260)
T PRK00278 146 --DEQLKELLDYAHSLGLDVLVEVH-------------------D-EEELERALKLGAPLIGINNRNLK--TFEVDLETT 201 (260)
T ss_pred --HHHHHHHHHHHHHcCCeEEEEeC-------------------C-HHHHHHHHHcCCCEEEECCCCcc--cccCCHHHH
Confidence 44555555443110122334442 1 23446677889998888876653 346789988
Q ss_pred HHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156 250 ALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV 304 (316)
Q Consensus 250 ~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~ 304 (316)
.++.+.. ..|+|+.|||.+++|+.++.+.| +++|+||+++ .... ++.+..
T Consensus 202 ~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~G--ad~vlVGsaI--~~~~-dp~~~~ 253 (260)
T PRK00278 202 ERLAPLIPSDRLVVSESGIFTPEDLKRLAKAG--ADAVLVGESL--MRAD-DPGAAL 253 (260)
T ss_pred HHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcC--CCEEEECHHH--cCCC-CHHHHH
Confidence 8887654 36999999999999999999998 9999999999 6443 444433
No 62
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.22 E-value=1.6e-10 Score=106.03 Aligned_cols=112 Identities=15% Similarity=0.102 Sum_probs=91.2
Q ss_pred eEEEeeeeeecCCeeEEEeCCcce----ecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEE
Q 021156 186 RLVLDLSCRKKDGKYAIVTDRWQK----FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVT 261 (316)
Q Consensus 186 ~IvvslD~k~~~g~~~v~~~gw~~----~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVI 261 (316)
+|++++|++ +|+ .|+...+.. ...-+|.+.++.+.+.|++++.+.|++..-...+.|+++++++.+.+ .|+.
T Consensus 2 ~IIPaIDl~--~Gk-~Vrl~~G~~~~~~~~~~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~-~~v~ 77 (241)
T PRK14114 2 LVVPAIDLF--RGK-VARMVKGKKENTIFYEKDPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEFA-EHIQ 77 (241)
T ss_pred EEEEEEEEE--CCE-EEEeeccccCcceEECCCHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhhc-CcEE
Confidence 489999998 886 666544432 22348999999999999999877777643234567999999999877 7999
Q ss_pred EEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156 262 YAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA 305 (316)
Q Consensus 262 asGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~ 305 (316)
++|||+|.+|++++++.| ++.|++|++. ++++-.++++.+
T Consensus 78 vGGGIrs~e~~~~~l~~G--a~rvvigT~a--~~~p~~l~~~~~ 117 (241)
T PRK14114 78 IGGGIRSLDYAEKLRKLG--YRRQIVSSKV--LEDPSFLKFLKE 117 (241)
T ss_pred EecCCCCHHHHHHHHHCC--CCEEEECchh--hCCHHHHHHHHH
Confidence 999999999999999998 9999999999 998766777644
No 63
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.22 E-value=1.9e-10 Score=105.01 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=91.0
Q ss_pred eEEEeeeeeecCCeeEEEeCCcce----ecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEE
Q 021156 186 RLVLDLSCRKKDGKYAIVTDRWQK----FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVT 261 (316)
Q Consensus 186 ~IvvslD~k~~~g~~~v~~~gw~~----~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVI 261 (316)
+|++++|++ +|+ .|+..++.. ..+ +|.+.++.+.+.|++++.+.|++.. ...+.|.+.++++.+.+..|+.
T Consensus 3 ~iIP~iDl~--~G~-~Vr~~~G~~~~~~~~~-dP~~~a~~~~~~ga~~lhivDLd~a-~~~~~n~~~i~~i~~~~~~~v~ 77 (232)
T PRK13586 3 KIIPSIDIS--LGK-AVKRIRGVKGTGLILG-NPIEIASKLYNEGYTRIHVVDLDAA-EGVGNNEMYIKEISKIGFDWIQ 77 (232)
T ss_pred EEEEEEEEE--CCE-EEEeeecCCCCceEcC-CHHHHHHHHHHCCCCEEEEEECCCc-CCCcchHHHHHHHHhhCCCCEE
Confidence 689999998 886 787766542 223 8999999999999999988887654 3456699999999885445999
Q ss_pred EEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156 262 YAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA 305 (316)
Q Consensus 262 asGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~ 305 (316)
++|||+|.+|++++++.| ++.|++|++. ++++-.++++.+
T Consensus 78 vGGGIrs~e~~~~~l~~G--a~kvvigt~a--~~~p~~~~~~~~ 117 (232)
T PRK13586 78 VGGGIRDIEKAKRLLSLD--VNALVFSTIV--FTNFNLFHDIVR 117 (232)
T ss_pred EeCCcCCHHHHHHHHHCC--CCEEEECchh--hCCHHHHHHHHH
Confidence 999999999999999998 9999999999 987655555443
No 64
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=99.21 E-value=1.7e-10 Score=106.31 Aligned_cols=113 Identities=14% Similarity=0.027 Sum_probs=93.0
Q ss_pred eEEEeeeeeecCCeeEEEeCCcce-e------------c--c--cCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHH
Q 021156 186 RLVLDLSCRKKDGKYAIVTDRWQK-F------------S--D--VYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDEL 248 (316)
Q Consensus 186 ~IvvslD~k~~~g~~~v~~~gw~~-~------------~--~--~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~el 248 (316)
|.+++||++ +|+ .|+..++.. . + . .+|.+.|+.+.+.|++.+ |-+|.|| ..+-|.++
T Consensus 2 ~~~PAIDl~--~Gk-~VrL~~G~~~~~~~~~~~~~~~~~~y~~~~dP~~~A~~~~~~Ga~~l--HvVDLdg-g~~~n~~~ 75 (262)
T PLN02446 2 RFRPCIDIH--KGK-VKQIVGSTLKDSKDGSEDGSELVTNFESDKSAAEFAEMYKRDGLTGG--HVIMLGA-DDASLAAA 75 (262)
T ss_pred CeeeeEEee--CCE-EEEeeCccccccccccccCCCceEEeCCCCCHHHHHHHHHHCCCCEE--EEEECCC-CCcccHHH
Confidence 568999998 887 887765543 1 1 1 589999999999999965 7777777 56669999
Q ss_pred HHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccC-cccHHHHHHHHHhh
Q 021156 249 VALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGG-NLAYKDVVAWHAQQ 310 (316)
Q Consensus 249 i~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g-~~~~~~~~~~~~~~ 310 (316)
++++++ +++||.++|||++ ++++++++.| ++.|++|+++ +++ .++++-+.++++.+
T Consensus 76 i~~i~~-~~~~vqvGGGIR~-e~i~~~l~~G--a~rViigT~A--v~~~~~~p~~v~~~~~~~ 132 (262)
T PLN02446 76 LEALRA-YPGGLQVGGGVNS-ENAMSYLDAG--ASHVIVTSYV--FRDGQIDLERLKDLVRLV 132 (262)
T ss_pred HHHHHh-CCCCEEEeCCccH-HHHHHHHHcC--CCEEEEchHH--HhCCCCCHHHHHHHHHHh
Confidence 999998 8899999999996 9999999999 9999999999 885 45566666666665
No 65
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=99.19 E-value=2.2e-09 Score=99.19 Aligned_cols=168 Identities=21% Similarity=0.141 Sum_probs=119.1
Q ss_pred CHHHHHHHHHHcCCCcceEE-----EecCC----cccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCC
Q 021156 94 SAAEFANLYKEDGLTGGHAI-----MLGAD----PLSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTS 162 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lv-----DLda~----~~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt 162 (316)
+| +.|+.-+++|+-.+-+. |+-.. ..+.+..++.++ .+++|++-=-=+. ..+++.+.++|+|.| +.
T Consensus 17 ~~-~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDiI--Da 93 (283)
T cd04727 17 NA-EQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMI--DE 93 (283)
T ss_pred CH-HHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHhCCCCeEEeeehhHHHHHHHHHHcCCCEE--ec
Confidence 44 48888888997765552 22211 135555666665 6899988322222 588999999999988 44
Q ss_pred eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEee--------
Q 021156 163 YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHG-------- 234 (316)
Q Consensus 163 ~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd-------- 234 (316)
+.+.+| ..+++..+.++|+ +.+..|+. .++.+.+..++|++.|=-|-
T Consensus 94 T~r~rP--~~~~~~~iK~~~~---~l~MAD~s--------------------tleEal~a~~~Gad~I~TTl~gyT~~~~ 148 (283)
T cd04727 94 SEVLTP--ADEEHHIDKHKFK---VPFVCGAR--------------------NLGEALRRISEGAAMIRTKGEAGTGNVV 148 (283)
T ss_pred cCCCCc--HHHHHHHHHHHcC---CcEEccCC--------------------CHHHHHHHHHCCCCEEEecCCCCCCcHH
Confidence 444441 1378888888782 44566664 24677888888998764221
Q ss_pred ------------------cCCcc-----ccCCCCHHHHHHHhhcCCCcEE--EEeCCCCHHHHHHHHHhCCCcCEEEEcc
Q 021156 235 ------------------VDVEG-----KKLGIDDELVALLGKYSPIPVT--YAGGVTTMADLEKIKVAGIGRVDVTVGS 289 (316)
Q Consensus 235 ------------------i~~dG-----~~~G~d~eli~~l~~~~~iPVI--asGGI~s~eDi~~l~~~G~g~~gVivG~ 289 (316)
.+.+. ...++|+++++++.+..++||+ +.|||.+++++.++++.| +++|+||+
T Consensus 149 ~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~G--AdgVaVGS 226 (283)
T cd04727 149 EAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLG--ADGVFVGS 226 (283)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcC--CCEEEEcH
Confidence 01111 1246899999999998899997 999999999999999998 99999999
Q ss_pred ch
Q 021156 290 AL 291 (316)
Q Consensus 290 Al 291 (316)
++
T Consensus 227 AI 228 (283)
T cd04727 227 GI 228 (283)
T ss_pred Hh
Confidence 99
No 66
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=99.19 E-value=2.9e-10 Score=103.80 Aligned_cols=111 Identities=16% Similarity=0.169 Sum_probs=91.4
Q ss_pred eEEEeeeeeecCCeeEEEeCCcce----------ecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhc
Q 021156 186 RLVLDLSCRKKDGKYAIVTDRWQK----------FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKY 255 (316)
Q Consensus 186 ~IvvslD~k~~~g~~~v~~~gw~~----------~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~ 255 (316)
+|++++|++ +|+ .|+..++.. ...-++.+.++.+.+.|++++.+-|+++. ...+.|.++++++.+.
T Consensus 1 riiP~iDl~--~G~-~V~~~~G~~~~~~p~~~~~~~~~dp~~~a~~~~~~g~~~l~i~DLd~~-~~~~~n~~~i~~i~~~ 76 (233)
T cd04723 1 RIIPVIDLK--DGV-VVHGVGGDRDNYRPITSNLCSTSDPLDVARAYKELGFRGLYIADLDAI-MGRGDNDEAIRELAAA 76 (233)
T ss_pred CeEEEEECc--CCE-EEEeeccChhhccccccCcccCCCHHHHHHHHHHCCCCEEEEEeCccc-cCCCccHHHHHHHHHh
Confidence 589999998 886 777655441 11348999999999999999988888765 3566799999999998
Q ss_pred CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156 256 SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA 305 (316)
Q Consensus 256 ~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~ 305 (316)
+.+|+.++|||++.+|+.++++.| ++.|++|+.. +.+ -.++++.+
T Consensus 77 ~~~~v~vgGGir~~edv~~~l~~G--a~~viigt~~--~~~-~~~~~~~~ 121 (233)
T cd04723 77 WPLGLWVDGGIRSLENAQEWLKRG--ASRVIVGTET--LPS-DDDEDRLA 121 (233)
T ss_pred CCCCEEEecCcCCHHHHHHHHHcC--CCeEEEccee--ccc-hHHHHHHH
Confidence 899999999999999999999998 9999999999 876 33444443
No 67
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.14 E-value=6.9e-10 Score=101.29 Aligned_cols=114 Identities=14% Similarity=0.130 Sum_probs=90.4
Q ss_pred eEEEeeeeeecCCeeEEEeCCcc----eecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEE
Q 021156 186 RLVLDLSCRKKDGKYAIVTDRWQ----KFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVT 261 (316)
Q Consensus 186 ~IvvslD~k~~~g~~~v~~~gw~----~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVI 261 (316)
+|++++|++ +|+ .|...++. ....-++.+.++.+.+.|++++.+-|.+..-...+.+++.++++++.+++|++
T Consensus 4 ~iip~idl~--~g~-~v~~~~g~~~~~~~~~~~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~ 80 (241)
T PRK13585 4 EVIPAVDMK--GGK-CVQLVQGEPGTETVSYGDPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQ 80 (241)
T ss_pred EEEEEEEeE--CCe-EEEeeccccCCceEECCCHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEE
Confidence 699999998 886 66665553 12234799999999999999875554443323345689999999999999999
Q ss_pred EEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHH
Q 021156 262 YAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAW 306 (316)
Q Consensus 262 asGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~ 306 (316)
++|||++.+|+..+++.| +++|++|+++ +..+-.+.++.+.
T Consensus 81 v~GGi~~~~~~~~~~~~G--a~~v~iGs~~--~~~~~~~~~i~~~ 121 (241)
T PRK13585 81 LGGGIRSAEDAASLLDLG--VDRVILGTAA--VENPEIVRELSEE 121 (241)
T ss_pred EcCCcCCHHHHHHHHHcC--CCEEEEChHH--hhChHHHHHHHHH
Confidence 999999999999999998 9999999999 8776555555544
No 68
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=99.12 E-value=9e-10 Score=101.18 Aligned_cols=110 Identities=16% Similarity=0.150 Sum_probs=89.8
Q ss_pred eEEEeeeeeecCCeeEEEeCCcc----eecccCHHHHHHHHHHcCCCEEEEeecCCccc-cCCCCHHHHHHHhhcCCCcE
Q 021156 186 RLVLDLSCRKKDGKYAIVTDRWQ----KFSDVYLDERVLDFLASYADEFLVHGVDVEGK-KLGIDDELVALLGKYSPIPV 260 (316)
Q Consensus 186 ~IvvslD~k~~~g~~~v~~~gw~----~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~-~~G~d~eli~~l~~~~~iPV 260 (316)
.|++++|++ +|+ .|+..+++ +..+ ++.+.++.+.+.|++.+. -+|.|+. ..+.|.++++++.+.+++|+
T Consensus 4 ~iiPaIDl~--~G~-vVrl~~G~~~~~~~y~-~p~~~a~~~~~~g~~~lh--ivDLd~a~g~~~n~~~i~~i~~~~~~~v 77 (243)
T TIGR01919 4 ILLPAVDVN--GGA-AVRLQQGAGGSKTYYG-SLESAAKWWEQGGAEWIH--LVDLDAAFGGGNNEMMLEEVVKLLVVVE 77 (243)
T ss_pred EEEEEEEEE--CCE-EEEeecCCCCCceecC-CHHHHHHHHHhCCCeEEE--EEECCCCCCCcchHHHHHHHHHHCCCCE
Confidence 589999998 886 78776663 2334 889999999999988664 4445555 45669999999999889999
Q ss_pred EEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156 261 TYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA 305 (316)
Q Consensus 261 IasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~ 305 (316)
.++|||+|.+|++++++.| ++.|++|+++ ++++-.++++.+
T Consensus 78 ~vgGGIrs~e~~~~~l~~G--a~~vvigT~a--~~~p~~~~~~~~ 118 (243)
T TIGR01919 78 ELSGGRRDDSSLRAALTGG--RARVNGGTAA--LENPWWAAAVIR 118 (243)
T ss_pred EEcCCCCCHHHHHHHHHcC--CCEEEECchh--hCCHHHHHHHHH
Confidence 9999999999999999998 9999999999 887655555544
No 69
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=99.11 E-value=5.3e-09 Score=96.79 Aligned_cols=168 Identities=20% Similarity=0.116 Sum_probs=115.8
Q ss_pred CHHHHHHHHHHcCCCcceE-----EEecCC----cccHHHHHHHH-HhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCC
Q 021156 94 SAAEFANLYKEDGLTGGHA-----IMLGAD----PLSKAAAIEAL-HAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTS 162 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~l-----vDLda~----~~~~~~i~~~v-~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt 162 (316)
+|. .|+.-+++|+-.+-. .|+-+. ..+.+..++.+ +.+++|++-=--+. ..+++.+.++|+|.| +.
T Consensus 19 ~~e-qa~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~~I~~I~~~V~iPVig~~kigh~~Ea~~L~~~GvDiI--De 95 (287)
T TIGR00343 19 NPE-QAKIAEEAGAVAVMALERVPADIRASGGVARMSDPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYI--DE 95 (287)
T ss_pred CHH-HHHHHHHcCceEEEeeccCchhhHhcCCeeecCCHHHHHHHHHhCCCCEEEEeeccHHHHHHHHHHcCCCEE--Ec
Confidence 564 888888899664333 222211 12455555555 47899998555554 689999999999988 43
Q ss_pred eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC------
Q 021156 163 YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD------ 236 (316)
Q Consensus 163 ~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~------ 236 (316)
+.+.+| ..+++..+.+.|+ +.+..|++ .++.+.+..+.|++.|=-|.-.
T Consensus 96 Te~lrP--ade~~~~~K~~f~---vpfmad~~--------------------~l~EAlrai~~GadmI~Tt~e~gTg~v~ 150 (287)
T TIGR00343 96 SEVLTP--ADWTFHIDKKKFK---VPFVCGAR--------------------DLGEALRRINEGAAMIRTKGEAGTGNIV 150 (287)
T ss_pred cCCCCc--HHHHHHHHHHHcC---CCEEccCC--------------------CHHHHHHHHHCCCCEEeccccCCCccHH
Confidence 333331 1367777777772 45666664 1355666667777765322100
Q ss_pred --------------------Cc------cccCCCCHHHHHHHhhcCCCcEE--EEeCCCCHHHHHHHHHhCCCcCEEEEc
Q 021156 237 --------------------VE------GKKLGIDDELVALLGKYSPIPVT--YAGGVTTMADLEKIKVAGIGRVDVTVG 288 (316)
Q Consensus 237 --------------------~d------G~~~G~d~eli~~l~~~~~iPVI--asGGI~s~eDi~~l~~~G~g~~gVivG 288 (316)
.+ -...++++++++++++..++||+ +.|||.|++|+..+++.| +++|+||
T Consensus 151 ~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melG--AdGVaVG 228 (287)
T TIGR00343 151 EAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLG--ADGVFVG 228 (287)
T ss_pred HHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcC--CCEEEEh
Confidence 00 11236899999999998899998 999999999999999998 9999999
Q ss_pred cch
Q 021156 289 SAL 291 (316)
Q Consensus 289 ~Al 291 (316)
+++
T Consensus 229 SaI 231 (287)
T TIGR00343 229 SGI 231 (287)
T ss_pred HHh
Confidence 999
No 70
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=99.10 E-value=2.5e-09 Score=94.17 Aligned_cols=173 Identities=17% Similarity=0.101 Sum_probs=121.5
Q ss_pred HHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEE-------ec--CCC--HHHHHHHHHcCCCEEEeCCeee
Q 021156 97 EFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQV-------GG--GIN--SDNSLSYIEEGATHVIVTSYVF 165 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~v-------GG--GIr--~e~~~~~l~~Gad~VVigt~~~ 165 (316)
.+|+.-.+.|+-++..= ....+..+-+.+++|++- +- =|. .++++.+.++||+.|.++.+.+
T Consensus 37 ~mA~Aa~~gGAvgiR~~-------gv~dIkai~~~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R 109 (229)
T COG3010 37 AMALAAEQGGAVGIRIE-------GVEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDR 109 (229)
T ss_pred HHHHHHHhCCcceEeec-------chhhHHHHHhhCCCCeEEEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecccC
Confidence 45555555676644321 122233333357777751 11 133 2789999999999999999999
Q ss_pred cCCCCCHH-HHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEE--EeecCC-cccc
Q 021156 166 NNGQMDLE-RLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFL--VHGVDV-EGKK 241 (316)
Q Consensus 166 ~~~~~~~e-li~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~il--vtdi~~-dG~~ 241 (316)
++ |+ -++++.+....-...++.|+. .+|....+.++|++.+- +..-+. .-+-
T Consensus 110 ~R----P~~~~~~~i~~~k~~~~l~MAD~S--------------------t~ee~l~a~~~G~D~IGTTLsGYT~~~~~~ 165 (229)
T COG3010 110 PR----PDGDLEELIARIKYPGQLAMADCS--------------------TFEEGLNAHKLGFDIIGTTLSGYTGYTEKP 165 (229)
T ss_pred CC----CcchHHHHHHHhhcCCcEEEeccC--------------------CHHHHHHHHHcCCcEEecccccccCCCCCC
Confidence 98 65 666666543222345677763 34677888999999763 222222 1245
Q ss_pred CCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156 242 LGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ 309 (316)
Q Consensus 242 ~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~ 309 (316)
.+||+++++++.+ .+++||+.|.+.|++..+++++.| +++|+||+|+ +. ++++-+|+..
T Consensus 166 ~~pDf~lvk~l~~-~~~~vIAEGr~~tP~~Ak~a~~~G--a~aVvVGsAI---TR---p~~It~~F~~ 224 (229)
T COG3010 166 TEPDFQLVKQLSD-AGCRVIAEGRYNTPEQAKKAIEIG--ADAVVVGSAI---TR---PEEITQWFVD 224 (229)
T ss_pred CCCcHHHHHHHHh-CCCeEEeeCCCCCHHHHHHHHHhC--CeEEEECccc---CC---HHHHHHHHHH
Confidence 7899999999988 689999999999999999999999 9999999999 43 6778777654
No 71
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.09 E-value=4.8e-09 Score=97.34 Aligned_cols=168 Identities=19% Similarity=0.121 Sum_probs=117.5
Q ss_pred CHHHHHHHHHHcCCCcceE-----EEec--CC--cccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCC
Q 021156 94 SAAEFANLYKEDGLTGGHA-----IMLG--AD--PLSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTS 162 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~l-----vDLd--a~--~~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt 162 (316)
+|. .|+.-+++|++++-+ -|.- ++ -.+.+..++.++ .+++|++.=-=+- ..+++.+.++|+|.| ..
T Consensus 26 ~~~-~a~iae~~g~~~v~~~~~~psd~~~~gg~~Rm~~p~~I~aIk~~V~iPVigk~Righ~~Ea~~L~~~GvDiI--D~ 102 (293)
T PRK04180 26 NAE-QAKIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIEEIMDAVSIPVMAKARIGHFVEAQILEALGVDYI--DE 102 (293)
T ss_pred CHH-HHHHHHHhChHHHHHccCCCchHhhcCCeeecCCHHHHHHHHHhCCCCeEEeehhhHHHHHHHHHHcCCCEE--ec
Confidence 454 778778889887665 2221 11 124555555554 6899998655554 689999999999988 33
Q ss_pred eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEe---------
Q 021156 163 YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVH--------- 233 (316)
Q Consensus 163 ~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvt--------- 233 (316)
+.+.+| ..+++..+.+.| .+.+..|++ .++.+.+..+.|++.|=-|
T Consensus 103 Te~lrp--ad~~~~~~K~~f---~~~fmad~~--------------------~l~EAlrai~~GadmI~Ttge~gtg~v~ 157 (293)
T PRK04180 103 SEVLTP--ADEEYHIDKWDF---TVPFVCGAR--------------------NLGEALRRIAEGAAMIRTKGEAGTGNVV 157 (293)
T ss_pred cCCCCc--hHHHHHHHHHHc---CCCEEccCC--------------------CHHHHHHHHHCCCCeeeccCCCCCccHH
Confidence 333331 136777887878 345666664 1355666666777755333
Q ss_pred -----------------ecCCcc--c---cCCCCHHHHHHHhhcCCCcEE--EEeCCCCHHHHHHHHHhCCCcCEEEEcc
Q 021156 234 -----------------GVDVEG--K---KLGIDDELVALLGKYSPIPVT--YAGGVTTMADLEKIKVAGIGRVDVTVGS 289 (316)
Q Consensus 234 -----------------di~~dG--~---~~G~d~eli~~l~~~~~iPVI--asGGI~s~eDi~~l~~~G~g~~gVivG~ 289 (316)
..+.+. + ..++|+++++++++..++||+ +.|||.+++|+..+++.| +++|+||+
T Consensus 158 ~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~G--AdgVaVGS 235 (293)
T PRK04180 158 EAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLG--ADGVFVGS 235 (293)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhC--CCEEEEcH
Confidence 111111 1 257899999999998899998 999999999999999998 99999999
Q ss_pred ch
Q 021156 290 AL 291 (316)
Q Consensus 290 Al 291 (316)
++
T Consensus 236 aI 237 (293)
T PRK04180 236 GI 237 (293)
T ss_pred Hh
Confidence 99
No 72
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=99.05 E-value=2.5e-09 Score=98.31 Aligned_cols=111 Identities=13% Similarity=0.035 Sum_probs=89.0
Q ss_pred eEEEeeeeeecCCeeEEEeCCccee--------c---ccCH-HHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHh
Q 021156 186 RLVLDLSCRKKDGKYAIVTDRWQKF--------S---DVYL-DERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLG 253 (316)
Q Consensus 186 ~IvvslD~k~~~g~~~v~~~gw~~~--------~---~~~~-~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~ 253 (316)
+.+++||++ +|+ .|+...+... + ..++ .+.|+.+.+.|++.+ |-+|. ... |.++++++.
T Consensus 2 ~~iPAIDl~--~Gk-~VrL~qG~~~~~~~~~~~~~~y~~~pp~~~A~~~~~~Ga~~l--HvVDL---g~~-n~~~i~~i~ 72 (253)
T TIGR02129 2 KFRPCIDIH--NGK-VKQIVGGTLTSKKGSVLKTNFVSDKPSSYYAKLYKDDGVKGC--HVIML---GPN-NDDAAKEAL 72 (253)
T ss_pred ceEeEEEee--CCE-EEEeeCcCccccccCCcceEEecCCCHHHHHHHHHHcCCCEE--EEEEC---CCC-cHHHHHHHH
Confidence 468999998 887 8887665422 1 2346 999999999999976 55555 233 999999999
Q ss_pred hcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc-ccHHHHHHHHHhh
Q 021156 254 KYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN-LAYKDVVAWHAQQ 310 (316)
Q Consensus 254 ~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~-~~~~~~~~~~~~~ 310 (316)
+.+++||.++|||++ +++++++++| ++.|++|+++ +.++ +..+.+.++.+.+
T Consensus 73 ~~~~~~v~vGGGIr~-e~v~~~l~aG--a~rVvIGS~a--v~~~~i~~~~~~~i~~~f 125 (253)
T TIGR02129 73 HAYPGGLQVGGGIND-TNAQEWLDEG--ASHVIVTSWL--FTKGKFDLKRLKEIVSLV 125 (253)
T ss_pred HhCCCCEEEeCCcCH-HHHHHHHHcC--CCEEEECcHH--HhCCCCCHHHHHHHHHHh
Confidence 999999999999998 9999999999 9999999999 8874 4555666666665
No 73
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.03 E-value=2e-08 Score=86.77 Aligned_cols=174 Identities=23% Similarity=0.172 Sum_probs=119.3
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCcc-c--H--HHHHHHHHhCCCcEEEecCCC-HHH-H----HHHHHcCCCEEEeCC
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADPL-S--K--AAAIEALHAYPGGLQVGGGIN-SDN-S----LSYIEEGATHVIVTS 162 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~~-~--~--~~i~~~v~~~~~pl~vGGGIr-~e~-~----~~~l~~Gad~VVigt 162 (316)
++.+.++.+.+.|+..+++...+.... + . ..+....+..++|+.+...++ ..+ . +.+.++|+|.|.++.
T Consensus 13 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~ 92 (200)
T cd04722 13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHG 92 (200)
T ss_pred HHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEec
Confidence 678899999999999888888775421 1 1 124444456788999998886 333 3 478899999999987
Q ss_pred eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccC
Q 021156 163 YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKL 242 (316)
Q Consensus 163 ~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~ 242 (316)
.....++..++.++++.+.++.-.+.+.+... . + .. .+ .+.+.|++.+.++.....+...
T Consensus 93 ~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~---~----------~---~~---~~-~~~~~g~d~i~~~~~~~~~~~~ 152 (200)
T cd04722 93 AVGYLAREDLELIRELREAVPDVKVVVKLSPT---G----------E---LA---AA-AAEEAGVDEVGLGNGGGGGGGR 152 (200)
T ss_pred cCCcHHHHHHHHHHHHHHhcCCceEEEEECCC---C----------c---cc---hh-hHHHcCCCEEEEcCCcCCCCCc
Confidence 76431011156777777766222333333221 0 0 00 11 1678899999888876655555
Q ss_pred CCCH---HHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEcc
Q 021156 243 GIDD---ELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGS 289 (316)
Q Consensus 243 G~d~---eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~ 289 (316)
..+. ..++.+.+..++||+++||+.+.+++.++++.| ++++++||
T Consensus 153 ~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~G--ad~v~vgs 200 (200)
T cd04722 153 DAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALG--ADGVIVGS 200 (200)
T ss_pred cCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhC--CCEEEecC
Confidence 5543 456666667789999999999999999999998 99999996
No 74
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=98.97 E-value=7.5e-09 Score=97.80 Aligned_cols=153 Identities=16% Similarity=0.142 Sum_probs=105.4
Q ss_pred EEEecCCCH---HH-HHHHHHcCCCEEEeCCeeecC------C---CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEE
Q 021156 136 LQVGGGINS---DN-SLSYIEEGATHVIVTSYVFNN------G---QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAI 202 (316)
Q Consensus 136 l~vGGGIr~---e~-~~~~l~~Gad~VVigt~~~~~------~---~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v 202 (316)
+++-|+-.. .+ ++.+-+.|||.+-++...-+. | ..+|+.+.++.+.. ++.+-+.+-+|.
T Consensus 104 ~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v-~~~~~~Pv~vKl------- 175 (299)
T cd02940 104 ASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWV-REAVKIPVIAKL------- 175 (299)
T ss_pred EEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHH-HHhcCCCeEEEC-------
Confidence 566665332 22 455555799988775443221 1 02588999988877 333333444442
Q ss_pred EeCCcceecccCHHHHHHHHHHcCCCEEEEee---------------------cCCccccCCC-C----HHHHHHHhhcC
Q 021156 203 VTDRWQKFSDVYLDERVLDFLASYADEFLVHG---------------------VDVEGKKLGI-D----DELVALLGKYS 256 (316)
Q Consensus 203 ~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd---------------------i~~dG~~~G~-d----~eli~~l~~~~ 256 (316)
.-. . .++.++++.+++.|++.+++++ .+..|.++|+ + |+.+.++++.+
T Consensus 176 --~~~---~-~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~ 249 (299)
T cd02940 176 --TPN---I-TDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAP 249 (299)
T ss_pred --CCC---c-hhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhc
Confidence 211 1 1577899999999999987532 2233455665 4 78999999888
Q ss_pred --CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156 257 --PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA 305 (316)
Q Consensus 257 --~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~ 305 (316)
++|||++|||.+.+|+.+.+.+| +++|+|||++ .++|+-.+.++.+
T Consensus 250 ~~~ipIig~GGI~~~~da~~~l~aG--A~~V~i~ta~-~~~g~~~~~~i~~ 297 (299)
T cd02940 250 EPGLPISGIGGIESWEDAAEFLLLG--ASVVQVCTAV-MNQGFTIVDDMCT 297 (299)
T ss_pred CCCCcEEEECCCCCHHHHHHHHHcC--CChheEceee-cccCCcHHHHHhh
Confidence 89999999999999999999988 9999999998 2448877777653
No 75
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=98.97 E-value=6.9e-09 Score=94.04 Aligned_cols=110 Identities=16% Similarity=0.121 Sum_probs=86.0
Q ss_pred eEEEeeeeeecCCeeEEEeCCcce-e---------cccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhc
Q 021156 186 RLVLDLSCRKKDGKYAIVTDRWQK-F---------SDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKY 255 (316)
Q Consensus 186 ~IvvslD~k~~~g~~~v~~~gw~~-~---------~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~ 255 (316)
+|++++|++ +|+ .|+..++.. . ..-+|.+.++.+.+.|++++.+.|++.. ...+.|+++++++++.
T Consensus 2 ~iIP~iDl~--~g~-~Vr~~~G~~~~~~~~~~~~~~~~dP~~~a~~~~~~g~~~l~ivDLd~~-~~~~~n~~~i~~i~~~ 77 (221)
T TIGR00734 2 KIIPVIDLK--DGI-AVAGKSGERESYPPLESVSRLSSSPDDAAKVIEEIGARFIYIADLDRI-VGLGDNFSLLSKLSKR 77 (221)
T ss_pred EEEEEEEee--CCE-EEEccccCcccccccccceecCCCHHHHHHHHHHcCCCEEEEEEcccc-cCCcchHHHHHHHHhh
Confidence 689999998 886 777765331 1 1238999999999999999988887664 2456699999999886
Q ss_pred CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHH
Q 021156 256 SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDV 303 (316)
Q Consensus 256 ~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~ 303 (316)
+|+.++|||+|.+|+++++..-.+++.|++|++. ++++-.++++
T Consensus 78 --~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a--~~~p~~l~~~ 121 (221)
T TIGR00734 78 --VELIADCGVRSPEDLETLPFTLEFASRVVVATET--LDITELLREC 121 (221)
T ss_pred --CcEEEcCccCCHHHHHHHHhhhccceEEeecChh--hCCHHHHHHh
Confidence 4999999999999999998731138999999999 8865444433
No 76
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=98.97 E-value=3.9e-09 Score=106.86 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=84.5
Q ss_pred CceEEEeeeeeecC-Cee-EEEeCCc--------ce--ecccCHHHHHHHHHHcCCCEEEEeecCCccc---cCCCCHHH
Q 021156 184 KQRLVLDLSCRKKD-GKY-AIVTDRW--------QK--FSDVYLDERVLDFLASYADEFLVHGVDVEGK---KLGIDDEL 248 (316)
Q Consensus 184 ~~~IvvslD~k~~~-g~~-~v~~~gw--------~~--~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~---~~G~d~el 248 (316)
..||+++||+|.++ |.. .++...+ .. ..+ ++.++|+.+.+.|++++.+.|++..-. .+.+++++
T Consensus 227 ~~riip~l~v~~~~~g~~~v~kg~~f~~~~~~~~~~~~~~g-dPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~ 305 (538)
T PLN02617 227 AKRVIACLDVRSNDKGDLVVTKGDQYDVREHSEGREVRNLG-KPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEV 305 (538)
T ss_pred cceEEEEEEeecCCCCceEEeecccccccccccccCCCcCC-CHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHH
Confidence 35899999998321 321 2233444 11 122 799999999999999999999986321 23456999
Q ss_pred HHHHhhcCCCcEEEEeCCCCH-----------HHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156 249 VALLGKYSPIPVTYAGGVTTM-----------ADLEKIKVAGIGRVDVTVGSALDIFGGN 297 (316)
Q Consensus 249 i~~l~~~~~iPVIasGGI~s~-----------eDi~~l~~~G~g~~gVivG~Al~~~~g~ 297 (316)
++++++.+.+|+.++|||++. |+++++++.| ++.|+||+++ ++++
T Consensus 306 i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~G--adkV~i~s~A--v~~~ 361 (538)
T PLN02617 306 LRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSG--ADKISIGSDA--VYAA 361 (538)
T ss_pred HHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHHcC--CCEEEEChHH--HhCh
Confidence 999999999999999999998 6699999998 9999999999 8753
No 77
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.96 E-value=2.7e-08 Score=93.61 Aligned_cols=153 Identities=19% Similarity=0.167 Sum_probs=107.0
Q ss_pred CcEEEecCCC--H-HHHHHHHHcCCCEEEeCCe----------eecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCee
Q 021156 134 GGLQVGGGIN--S-DNSLSYIEEGATHVIVTSY----------VFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKY 200 (316)
Q Consensus 134 ~pl~vGGGIr--~-e~~~~~l~~Gad~VVigt~----------~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~ 200 (316)
+-++++|.-. . +-++.+.++|+|.|-++.. ... +++++.++.+.. ++.+-+.+-+|
T Consensus 92 ~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~----~~~~~~eiv~~v-r~~~~~Pv~vK------ 160 (296)
T cd04740 92 VIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGT----DPEAVAEIVKAV-KKATDVPVIVK------ 160 (296)
T ss_pred EEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccC----CHHHHHHHHHHH-HhccCCCEEEE------
Confidence 3356666542 2 3466777789999988432 223 488888888877 34332233332
Q ss_pred EEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC------C----------ccccCCC-----CHHHHHHHhhcCCCc
Q 021156 201 AIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD------V----------EGKKLGI-----DDELVALLGKYSPIP 259 (316)
Q Consensus 201 ~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~------~----------dG~~~G~-----d~eli~~l~~~~~iP 259 (316)
+.... -+..++++.+++.|++.+.+++.. . .|.+.|+ .+++++++++.+++|
T Consensus 161 ---l~~~~----~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ip 233 (296)
T cd04740 161 ---LTPNV----TDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIP 233 (296)
T ss_pred ---eCCCc----hhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCC
Confidence 22111 146788999999999988765321 1 0334444 368899998888999
Q ss_pred EEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156 260 VTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA 308 (316)
Q Consensus 260 VIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~ 308 (316)
||++|||.+.+|+.++++.| ++.|++||++ +.+++.++++.+-+.
T Consensus 234 ii~~GGI~~~~da~~~l~~G--Ad~V~igra~--l~~p~~~~~i~~~l~ 278 (296)
T cd04740 234 IIGVGGIASGEDALEFLMAG--ASAVQVGTAN--FVDPEAFKEIIEGLE 278 (296)
T ss_pred EEEECCCCCHHHHHHHHHcC--CCEEEEchhh--hcChHHHHHHHHHHH
Confidence 99999999999999999988 9999999999 889988888766443
No 78
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=98.92 E-value=1.2e-08 Score=93.30 Aligned_cols=107 Identities=18% Similarity=0.089 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccC--CCCHHH
Q 021156 171 DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKL--GIDDEL 248 (316)
Q Consensus 171 ~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~--G~d~el 248 (316)
+|+.+.++.+..- + .-+.+.+|.+ .+|. .+..++++.+++.|++.+ |-.. +.. ..||+.
T Consensus 124 ~p~~l~eiv~avr-~-~~~pVsvKir--------~g~~----~~~~~la~~l~~aG~d~i--hv~~---~~~g~~ad~~~ 184 (233)
T cd02911 124 DPERLSEFIKALK-E-TGVPVSVKIR--------AGVD----VDDEELARLIEKAGADII--HVDA---MDPGNHADLKK 184 (233)
T ss_pred CHHHHHHHHHHHH-h-cCCCEEEEEc--------CCcC----cCHHHHHHHHHHhCCCEE--EECc---CCCCCCCcHHH
Confidence 4999999998873 3 2233444321 2453 257899999999999954 5432 233 349999
Q ss_pred HHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156 249 VALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV 304 (316)
Q Consensus 249 i~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~ 304 (316)
+++++ +++|||++|||.|.+|+.++++.| +++|++||+. +||.|+++.
T Consensus 185 I~~i~--~~ipVIgnGgI~s~eda~~~l~~G--aD~VmiGR~~----~p~~~~~~~ 232 (233)
T cd02911 185 IRDIS--TELFIIGNNSVTTIESAKEMFSYG--ADMVSVARAS----LPENIEWLV 232 (233)
T ss_pred HHHhc--CCCEEEEECCcCCHHHHHHHHHcC--CCEEEEcCCC----CchHHHHhh
Confidence 99987 689999999999999999999987 9999999994 889988764
No 79
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=98.91 E-value=7e-08 Score=91.13 Aligned_cols=139 Identities=17% Similarity=0.142 Sum_probs=99.5
Q ss_pred HHHHHHcC-CCEEEeC----------CeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCH
Q 021156 147 SLSYIEEG-ATHVIVT----------SYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYL 215 (316)
Q Consensus 147 ~~~~l~~G-ad~VVig----------t~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~ 215 (316)
++++-++| +|.|-++ ....+ +++++.++.+.. ++.+-+.+-+| +.... .+.
T Consensus 110 a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~----~~~~~~eiv~~v-r~~~~~pv~vK---------l~~~~----~~~ 171 (301)
T PRK07259 110 AEKLSKAPNVDAIELNISCPNVKHGGMAFGT----DPELAYEVVKAV-KEVVKVPVIVK---------LTPNV----TDI 171 (301)
T ss_pred HHHHhccCCcCEEEEECCCCCCCCCcccccc----CHHHHHHHHHHH-HHhcCCCEEEE---------cCCCc----hhH
Confidence 66666788 9998773 23333 388888888877 34332333333 22111 156
Q ss_pred HHHHHHHHHcCCCEEEEeecC------C----------ccccCCC-----CHHHHHHHhhcCCCcEEEEeCCCCHHHHHH
Q 021156 216 DERVLDFLASYADEFLVHGVD------V----------EGKKLGI-----DDELVALLGKYSPIPVTYAGGVTTMADLEK 274 (316)
Q Consensus 216 ~e~a~~~~~~Ga~~ilvtdi~------~----------dG~~~G~-----d~eli~~l~~~~~iPVIasGGI~s~eDi~~ 274 (316)
.++++.+++.|++.+.+++.. . .|.+.|+ .+++++++++.+++|||++|||.+.+|+.+
T Consensus 172 ~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~~ 251 (301)
T PRK07259 172 VEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDAIE 251 (301)
T ss_pred HHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHHHH
Confidence 788999999999988764321 1 1223333 578999999888999999999999999999
Q ss_pred HHHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156 275 IKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH 307 (316)
Q Consensus 275 l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~ 307 (316)
++..| ++.|++||++ +.++..++++.+-.
T Consensus 252 ~l~aG--Ad~V~igr~l--l~~P~~~~~i~~~l 280 (301)
T PRK07259 252 FIMAG--ASAVQVGTAN--FYDPYAFPKIIEGL 280 (301)
T ss_pred HHHcC--CCceeEcHHH--hcCcHHHHHHHHHH
Confidence 99988 8999999999 88998887776643
No 80
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.86 E-value=3.1e-08 Score=94.44 Aligned_cols=165 Identities=17% Similarity=0.123 Sum_probs=108.7
Q ss_pred HHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhC-CCcEEEecCCC--H---HHHHHHHHcCC--CEEEeCCeeecCC
Q 021156 97 EFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAY-PGGLQVGGGIN--S---DNSLSYIEEGA--THVIVTSYVFNNG 168 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~-~~pl~vGGGIr--~---e~~~~~l~~Ga--d~VVigt~~~~~~ 168 (316)
++|+..++.|-..+..= + +.+......+++ +-.+.++.++. . +.+.+++++|+ |.++|+++--..
T Consensus 52 ~LA~~a~~~G~~~~~~k-~-----~~e~~~~~~r~~~~~~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~- 124 (326)
T PRK05458 52 KIAEWLAENGYFYIMHR-F-----DPEARIPFIKDMHEQGLIASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHS- 124 (326)
T ss_pred HHHHHHHHcCCEEEEec-C-----CHHHHHHHHHhccccccEEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCch-
Confidence 46776666662221111 1 222222333433 33457777773 2 56889999965 999998876321
Q ss_pred CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEee------cCCcccc-
Q 021156 169 QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHG------VDVEGKK- 241 (316)
Q Consensus 169 ~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd------i~~dG~~- 241 (316)
..-.++++++.+.|+ +..++.-++. ..+.++.+.+.|++.+.+.. +++..+.
T Consensus 125 ~~~~e~I~~ir~~~p-~~~vi~g~V~--------------------t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~ 183 (326)
T PRK05458 125 DSVINMIQHIKKHLP-ETFVIAGNVG--------------------TPEAVRELENAGADATKVGIGPGKVCITKIKTGF 183 (326)
T ss_pred HHHHHHHHHHHhhCC-CCeEEEEecC--------------------CHHHHHHHHHcCcCEEEECCCCCcccccccccCC
Confidence 112467888888773 4443333431 24788999999999976531 1221122
Q ss_pred CCCCHHH--HHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 242 LGIDDEL--VALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 242 ~G~d~el--i~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
.-+||.+ ++++++.+++|||+.|||++..|+.+++.+| +++|++|+++
T Consensus 184 ~~~~w~l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~G--A~aV~vG~~~ 233 (326)
T PRK05458 184 GTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIRFG--ATMVMIGSLF 233 (326)
T ss_pred CCCccHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhC--CCEEEechhh
Confidence 2357774 8888887899999999999999999999998 9999999998
No 81
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.86 E-value=4.3e-07 Score=80.73 Aligned_cols=179 Identities=21% Similarity=0.195 Sum_probs=110.1
Q ss_pred HHHHHHHHHHcCCCcceEEEecCCc----ccHHHHHHHHH-hCCCcEEEecCCC-H-HHHHHHHHcCCCEEEeCCeeecC
Q 021156 95 AAEFANLYKEDGLTGGHAIMLGADP----LSKAAAIEALH-AYPGGLQVGGGIN-S-DNSLSYIEEGATHVIVTSYVFNN 167 (316)
Q Consensus 95 p~e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~~v~-~~~~pl~vGGGIr-~-e~~~~~l~~Gad~VVigt~~~~~ 167 (316)
..+.++...+.|++.+|+.-.|+.. .....+.+.++ ..+.|+.++==++ . +.++.+.++|+|.|++--....+
T Consensus 13 ~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~ 92 (210)
T TIGR01163 13 LGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEH 92 (210)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchh
Confidence 4467788888899999996455432 12233344444 3456766554444 4 45888889999998885433222
Q ss_pred CCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHH
Q 021156 168 GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDE 247 (316)
Q Consensus 168 ~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~e 247 (316)
+....+..+.+|. ++.+.++.. +..+.++.+. .+++.+++..+...++....++.
T Consensus 93 ----~~~~~~~~~~~g~-~~~~~~~~~-------------------t~~e~~~~~~-~~~d~i~~~~~~~g~tg~~~~~~ 147 (210)
T TIGR01163 93 ----IHRLLQLIKDLGA-KAGIVLNPA-------------------TPLEFLEYVL-PDVDLVLLMSVNPGFGGQKFIPD 147 (210)
T ss_pred ----HHHHHHHHHHcCC-cEEEEECCC-------------------CCHHHHHHHH-hhCCEEEEEEEcCCCCcccccHH
Confidence 3223333444553 333444331 1245555553 46888776655543333334554
Q ss_pred H---HHHHhhcC-----CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156 248 L---VALLGKYS-----PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV 304 (316)
Q Consensus 248 l---i~~l~~~~-----~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~ 304 (316)
. ++++++.. ++|+.+.|||+ .+++.++.+.| ++++++|+++ |.-+ ++++..
T Consensus 148 ~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~g--ad~iivgsai--~~~~-d~~~~~ 206 (210)
T TIGR01163 148 TLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAG--ADILVAGSAI--FGAD-DYKEVI 206 (210)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcC--CCEEEEChHH--hCCC-CHHHHH
Confidence 4 44444433 27999999996 69999999988 9999999999 7544 555544
No 82
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=98.86 E-value=1.2e-07 Score=89.99 Aligned_cols=164 Identities=18% Similarity=0.141 Sum_probs=110.9
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCCc-ccHHHHHHHHHh-CCCcEEEecCC-C--H-HHHHHHHHcCCCEEEeCCeeec
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGADP-LSKAAAIEALHA-YPGGLQVGGGI-N--S-DNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~~-~~~~~i~~~v~~-~~~pl~vGGGI-r--~-e~~~~~l~~Gad~VVigt~~~~ 166 (316)
.+|. ++....++|..+ ++...... ......++.+++ .+.|+-++=-. . . +.++.+++.|++.|.++. .
T Consensus 23 s~~~-la~avs~aGglG--~l~~~~~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~---g 96 (307)
T TIGR03151 23 ATGS-LAAAVSNAGGLG--IIGAGNAPPDVVRKEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGA---G 96 (307)
T ss_pred CCHH-HHHHHHhCCCcc--eeccccCCHHHHHHHHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEcC---C
Confidence 3564 888888888443 22221111 112222333443 45565443322 2 2 446778899999887642 2
Q ss_pred CCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc-CCCC
Q 021156 167 NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK-LGID 245 (316)
Q Consensus 167 ~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~-~G~d 245 (316)
+ ..++++++.+ .| -.+ ..++- ..+.++.+++.|++.|++|..+..|+. ..++
T Consensus 97 ~---p~~~i~~lk~-~g-~~v--~~~v~--------------------s~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~ 149 (307)
T TIGR03151 97 N---PGKYIPRLKE-NG-VKV--IPVVA--------------------SVALAKRMEKAGADAVIAEGMESGGHIGELTT 149 (307)
T ss_pred C---cHHHHHHHHH-cC-CEE--EEEcC--------------------CHHHHHHHHHcCCCEEEEECcccCCCCCCCcH
Confidence 2 1346666654 33 122 22331 246789999999999999999888874 3358
Q ss_pred HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 246 DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 246 ~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
+++++++++.+++|||++|||.+.+|+.+++..| +++|++|+.+
T Consensus 150 ~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~G--A~gV~iGt~f 193 (307)
T TIGR03151 150 MALVPQVVDAVSIPVIAAGGIADGRGMAAAFALG--AEAVQMGTRF 193 (307)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcC--CCEeecchHH
Confidence 9999999998899999999999999999999988 9999999987
No 83
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.85 E-value=1.6e-07 Score=94.79 Aligned_cols=175 Identities=17% Similarity=0.153 Sum_probs=120.2
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCC---cccHHHHHHHHHh---------CCCcEEEecCC--C--H-HHHHHHHHcCC
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGAD---PLSKAAAIEALHA---------YPGGLQVGGGI--N--S-DNSLSYIEEGA 155 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~---~~~~~~i~~~v~~---------~~~pl~vGGGI--r--~-e~~~~~l~~Ga 155 (316)
.+..++.+.+.+.+...+-++|=++. -.....+.+.... -...+.||.-| + . |.++.+.++|+
T Consensus 182 ~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~~~~r~~~l~~ag~ 261 (505)
T PLN02274 182 IDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDKERLEHLVKAGV 261 (505)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCccHHHHHHHHHHcCC
Confidence 34556777788888888888874332 1233344444321 13468888866 3 2 66999999999
Q ss_pred CEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEe--
Q 021156 156 THVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVH-- 233 (316)
Q Consensus 156 d~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvt-- 233 (316)
|.|+++++-=.+ ..-++.++++.+.|+ +..++.-++ ...+.++.+.+.|++.|.+.
T Consensus 262 d~i~iD~~~g~~-~~~~~~i~~ik~~~p-~~~vi~g~v--------------------~t~e~a~~a~~aGaD~i~vg~g 319 (505)
T PLN02274 262 DVVVLDSSQGDS-IYQLEMIKYIKKTYP-ELDVIGGNV--------------------VTMYQAQNLIQAGVDGLRVGMG 319 (505)
T ss_pred CEEEEeCCCCCc-HHHHHHHHHHHHhCC-CCcEEEecC--------------------CCHHHHHHHHHcCcCEEEECCC
Confidence 999999963111 111378999988884 333333333 23477899999999988652
Q ss_pred ----ecCCccccCC----CCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 234 ----GVDVEGKKLG----IDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 234 ----di~~dG~~~G----~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
..++..+..| ..+..+.++++..++|||+.|||++..|+.+++.+| +++|++|+++
T Consensus 320 ~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~G--A~~V~vGs~~ 383 (505)
T PLN02274 320 SGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLG--ASTVMMGSFL 383 (505)
T ss_pred CCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcC--CCEEEEchhh
Confidence 1122222222 255667788777889999999999999999999999 9999999998
No 84
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=98.83 E-value=1.7e-07 Score=92.52 Aligned_cols=143 Identities=20% Similarity=0.154 Sum_probs=100.7
Q ss_pred HHHHHHcCCCEEEeCCeeec----C--CC---CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHH
Q 021156 147 SLSYIEEGATHVIVTSYVFN----N--GQ---MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDE 217 (316)
Q Consensus 147 ~~~~l~~Gad~VVigt~~~~----~--~~---~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e 217 (316)
++.+-++|+|.+-++...-+ + |. .+|+.+.++.+.. ++.+-+.+-+| +.-. . .++.+
T Consensus 119 a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v-~~~~~~Pv~vK---------l~p~--~--~~~~~ 184 (420)
T PRK08318 119 APLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWV-KRGSRLPVIVK---------LTPN--I--TDIRE 184 (420)
T ss_pred HHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHH-HhccCCcEEEE---------cCCC--c--ccHHH
Confidence 45555679999887644322 0 10 2589999999887 34333444444 2211 1 14678
Q ss_pred HHHHHHHcCCCEEEE---------------------eecCCccccCCCC-----HHHHHHHhhcC---CCcEEEEeCCCC
Q 021156 218 RVLDFLASYADEFLV---------------------HGVDVEGKKLGID-----DELVALLGKYS---PIPVTYAGGVTT 268 (316)
Q Consensus 218 ~a~~~~~~Ga~~ilv---------------------tdi~~dG~~~G~d-----~eli~~l~~~~---~iPVIasGGI~s 268 (316)
+++.+++.|++.+++ |.....|.++|+- |+.++++.+.+ ++|||++|||.|
T Consensus 185 ~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s 264 (420)
T PRK08318 185 PARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIET 264 (420)
T ss_pred HHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCC
Confidence 999999999999873 1122335566764 78999998876 799999999999
Q ss_pred HHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHH
Q 021156 269 MADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAW 306 (316)
Q Consensus 269 ~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~ 306 (316)
.+|+.+.+.+| +++|+||||+ .++|+-.++++.+-
T Consensus 265 ~~da~e~i~aG--A~~Vqi~ta~-~~~gp~ii~~I~~~ 299 (420)
T PRK08318 265 WRDAAEFILLG--AGTVQVCTAA-MQYGFRIVEDMISG 299 (420)
T ss_pred HHHHHHHHHhC--CChheeeeee-ccCCchhHHHHHHH
Confidence 99999999988 9999999998 24488776666553
No 85
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=98.81 E-value=9.5e-08 Score=90.14 Aligned_cols=144 Identities=19% Similarity=0.165 Sum_probs=98.3
Q ss_pred HHHHHHc--CCCEEEeCCeeecC---C-C--CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHH
Q 021156 147 SLSYIEE--GATHVIVTSYVFNN---G-Q--MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDER 218 (316)
Q Consensus 147 ~~~~l~~--Gad~VVigt~~~~~---~-~--~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~ 218 (316)
++.+-++ ++|.+-++...-.. | . -+++++.++.++. ++.+-+.+-+| +.... .+..++
T Consensus 109 a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~v-r~~~~~pv~vK---------i~~~~----~~~~~~ 174 (300)
T TIGR01037 109 AEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAV-KDKTDVPVFAK---------LSPNV----TDITEI 174 (300)
T ss_pred HHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHH-HHhcCCCEEEE---------CCCCh----hhHHHH
Confidence 4444444 38888885432211 1 0 1588888888777 33332233333 22111 146789
Q ss_pred HHHHHHcCCCEEEEeecC----------------CccccCCCC-----HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHH
Q 021156 219 VLDFLASYADEFLVHGVD----------------VEGKKLGID-----DELVALLGKYSPIPVTYAGGVTTMADLEKIKV 277 (316)
Q Consensus 219 a~~~~~~Ga~~ilvtdi~----------------~dG~~~G~d-----~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~ 277 (316)
++.+++.|++.+.+|... ..|.+.|+. ++.++++++.+++|||++|||.+.+|+.+++.
T Consensus 175 a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~ 254 (300)
T TIGR01037 175 AKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGITSFEDALEFLM 254 (300)
T ss_pred HHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHH
Confidence 999999999999876321 113345552 47888888888999999999999999999999
Q ss_pred hCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156 278 AGIGRVDVTVGSALDIFGGNLAYKDVVAWHA 308 (316)
Q Consensus 278 ~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~ 308 (316)
.| +++|++||++ +.+++.+.++.+-+.
T Consensus 255 ~G--Ad~V~igr~~--l~~p~~~~~i~~~l~ 281 (300)
T TIGR01037 255 AG--ASAVQVGTAV--YYRGFAFKKIIEGLI 281 (300)
T ss_pred cC--CCceeecHHH--hcCchHHHHHHHHHH
Confidence 87 9999999999 888887777766443
No 86
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.77 E-value=2.3e-07 Score=84.09 Aligned_cols=131 Identities=19% Similarity=0.140 Sum_probs=92.6
Q ss_pred HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH
Q 021156 145 DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA 224 (316)
Q Consensus 145 e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~ 224 (316)
+.++.+.++|++.|.++.. .. ++.++++.+ ++ -.+++.+ ...+.++.+.+
T Consensus 71 ~~~~~~~~~g~d~v~l~~~--~~----~~~~~~~~~-~~-i~~i~~v----------------------~~~~~~~~~~~ 120 (236)
T cd04730 71 ALLEVALEEGVPVVSFSFG--PP----AEVVERLKA-AG-IKVIPTV----------------------TSVEEARKAEA 120 (236)
T ss_pred HHHHHHHhCCCCEEEEcCC--CC----HHHHHHHHH-cC-CEEEEeC----------------------CCHHHHHHHHH
Confidence 4688889999999999865 32 566655543 32 1222221 11256777888
Q ss_pred cCCCEEEEeecCCccccCC---CCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc--cc
Q 021156 225 SYADEFLVHGVDVEGKKLG---IDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN--LA 299 (316)
Q Consensus 225 ~Ga~~ilvtdi~~dG~~~G---~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~--~~ 299 (316)
.|++.++++.....|.... .++++++++++.+++||+++|||++.+|+.++++.| +++|++|+++ ..-. -.
T Consensus 121 ~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~G--adgV~vgS~l--~~~~e~~~ 196 (236)
T cd04730 121 AGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALALG--ADGVQMGTRF--LATEESGA 196 (236)
T ss_pred cCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcC--CcEEEEchhh--hcCcccCC
Confidence 9999998887755454433 357799999888899999999999999999999988 9999999999 4322 22
Q ss_pred HHHHHHHHHh
Q 021156 300 YKDVVAWHAQ 309 (316)
Q Consensus 300 ~~~~~~~~~~ 309 (316)
..++++.+.+
T Consensus 197 ~~~~~~~~~~ 206 (236)
T cd04730 197 SPAYKQALLA 206 (236)
T ss_pred CHHHHHHHHc
Confidence 3455554444
No 87
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=98.75 E-value=8.1e-08 Score=89.97 Aligned_cols=144 Identities=19% Similarity=0.156 Sum_probs=98.9
Q ss_pred HHHHHHHHcCCCEEEeCCeeecCC-----CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHH
Q 021156 145 DNSLSYIEEGATHVIVTSYVFNNG-----QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERV 219 (316)
Q Consensus 145 e~~~~~l~~Gad~VVigt~~~~~~-----~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a 219 (316)
+.++.+.++|+|.+-++...-+.+ ..+++.+.++.+... +.+-+.+-+| +....+ .-+..+++
T Consensus 115 ~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr-~~~~~pv~vK---------l~~~~~--~~~~~~~a 182 (289)
T cd02810 115 ELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVK-AAVDIPLLVK---------LSPYFD--LEDIVELA 182 (289)
T ss_pred HHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHH-HccCCCEEEE---------eCCCCC--HHHHHHHH
Confidence 447777788999988864422110 114788888877773 3321223222 222111 11467889
Q ss_pred HHHHHcCCCEEEEeecCCc----------------cccCCC-----CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHH
Q 021156 220 LDFLASYADEFLVHGVDVE----------------GKKLGI-----DDELVALLGKYS--PIPVTYAGGVTTMADLEKIK 276 (316)
Q Consensus 220 ~~~~~~Ga~~ilvtdi~~d----------------G~~~G~-----d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~ 276 (316)
+.+.+.|++.+.++..... |.+.|+ .++.++++++.+ ++|||++|||.+.+|+.+++
T Consensus 183 ~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l 262 (289)
T cd02810 183 KAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEML 262 (289)
T ss_pred HHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHH
Confidence 9999999999987653221 112232 467888998877 89999999999999999999
Q ss_pred HhCCCcCEEEEccchhhccC-cccHHHHH
Q 021156 277 VAGIGRVDVTVGSALDIFGG-NLAYKDVV 304 (316)
Q Consensus 277 ~~G~g~~gVivG~Al~~~~g-~~~~~~~~ 304 (316)
..| +++|++|+++ +.+ +..+.++.
T Consensus 263 ~~G--Ad~V~vg~a~--~~~GP~~~~~i~ 287 (289)
T cd02810 263 MAG--ASAVQVATAL--MWDGPDVIRKIK 287 (289)
T ss_pred HcC--ccHheEcHHH--HhcCccHHHHHh
Confidence 988 9999999999 665 88877764
No 88
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=98.75 E-value=9.8e-07 Score=78.53 Aligned_cols=172 Identities=22% Similarity=0.133 Sum_probs=112.6
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCcc-cHHH---HHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADPL-SKAA---AIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQ 169 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~~-~~~~---i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~ 169 (316)
+..+.++...+.|++.+|+-.-|.... .... +.+.+...++++++- +.++.+.++|++.|.++.....
T Consensus 22 ~~~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~a~~~gad~vh~~~~~~~--- 93 (212)
T PRK00043 22 DLLEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRRYGVPLIVN-----DRVDLALAVGADGVHLGQDDLP--- 93 (212)
T ss_pred cHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEe-----ChHHHHHHcCCCEEecCcccCC---
Confidence 456677777788999988876554321 1111 222233456777763 5688889999999988765322
Q ss_pred CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC----C
Q 021156 170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI----D 245 (316)
Q Consensus 170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~----d 245 (316)
...+..+ .+ ....+++.+. + .+.+.+..+.|++.+.+..+...++..+. .
T Consensus 94 --~~~~~~~---~~-~~~~~g~~~~-------------------t-~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g 147 (212)
T PRK00043 94 --VADARAL---LG-PDAIIGLSTH-------------------T-LEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQG 147 (212)
T ss_pred --HHHHHHH---cC-CCCEEEEeCC-------------------C-HHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCC
Confidence 2323222 22 1223444331 2 23466777889999987665544444332 3
Q ss_pred HHHHHHHhhcCC-CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156 246 DELVALLGKYSP-IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA 305 (316)
Q Consensus 246 ~eli~~l~~~~~-iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~ 305 (316)
++.++++++..+ +||++.||| +.+++.++++.| ++++++|+++ +... ++.+..+
T Consensus 148 ~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~G--a~gv~~gs~i--~~~~-d~~~~~~ 202 (212)
T PRK00043 148 LEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAG--ADGVAVVSAI--TGAE-DPEAAAR 202 (212)
T ss_pred HHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcC--CCEEEEeHHh--hcCC-CHHHHHH
Confidence 889999988776 999999999 689999999998 9999999999 6533 4444443
No 89
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.74 E-value=1.7e-07 Score=91.69 Aligned_cols=132 Identities=18% Similarity=0.212 Sum_probs=94.5
Q ss_pred cEEEecCC--CH---HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcce
Q 021156 135 GLQVGGGI--NS---DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQK 209 (316)
Q Consensus 135 pl~vGGGI--r~---e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~ 209 (316)
.+.||..+ +. +.++.+.++|+|.|+|+++--. ++.-.++++++.+.|+ +..++.=++
T Consensus 141 ~l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g~-~~~~~~~v~~ik~~~p-~~~vi~g~V---------------- 202 (404)
T PRK06843 141 KLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGH-STRIIELVKKIKTKYP-NLDLIAGNI---------------- 202 (404)
T ss_pred CeEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCCC-ChhHHHHHHHHHhhCC-CCcEEEEec----------------
Confidence 46677666 42 5799999999999999887643 2223567888887774 332233333
Q ss_pred ecccCHHHHHHHHHHcCCCEEEEeecCCcc-------ccCC-CCHHHHHH---HhhcCCCcEEEEeCCCCHHHHHHHHHh
Q 021156 210 FSDVYLDERVLDFLASYADEFLVHGVDVEG-------KKLG-IDDELVAL---LGKYSPIPVTYAGGVTTMADLEKIKVA 278 (316)
Q Consensus 210 ~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG-------~~~G-~d~eli~~---l~~~~~iPVIasGGI~s~eDi~~l~~~ 278 (316)
...+.++.+.+.|++.|.+ .+...+ +.-| |++..+.. +.+..++|||+.|||++..|+.+++.+
T Consensus 203 ----~T~e~a~~l~~aGaD~I~v-G~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALal 277 (404)
T PRK06843 203 ----VTKEAALDLISVGADCLKV-GIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAA 277 (404)
T ss_pred ----CCHHHHHHHHHcCCCEEEE-CCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHc
Confidence 2357889999999999864 332211 1123 46776544 444568999999999999999999999
Q ss_pred CCCcCEEEEccch
Q 021156 279 GIGRVDVTVGSAL 291 (316)
Q Consensus 279 G~g~~gVivG~Al 291 (316)
| +++|++|+++
T Consensus 278 G--A~aVmvGs~~ 288 (404)
T PRK06843 278 G--ADSVMIGNLF 288 (404)
T ss_pred C--CCEEEEccee
Confidence 9 9999999998
No 90
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=98.72 E-value=1.7e-06 Score=77.68 Aligned_cols=173 Identities=16% Similarity=0.185 Sum_probs=119.6
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEEecCC-C-HHHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGI-N-SDNSLSYIEEGATHVIVTSYVFNNGQM 170 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~vGGGI-r-~e~~~~~l~~Gad~VVigt~~~~~~~~ 170 (316)
.+..++++...+.|++-+-+.. +. +...+.+.+..++.+.++.+|-|- . .++++.++++||+.++.+..
T Consensus 22 ~~~~~~~~a~~~gGi~~iEvt~-~~-~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~------- 92 (206)
T PRK09140 22 DEALAHVGALIEAGFRAIEIPL-NS-PDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPNT------- 92 (206)
T ss_pred HHHHHHHHHHHHCCCCEEEEeC-CC-ccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCCC-------
Confidence 3566788888888888666663 22 223334545555666678888776 4 59999999999999998764
Q ss_pred CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHH
Q 021156 171 DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVA 250 (316)
Q Consensus 171 ~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~ 250 (316)
+++.++.. ...| ..++++ +. ++ +.+.+..+.|++.+-+..- ....++.++
T Consensus 93 ~~~v~~~~-~~~~-~~~~~G--~~-------------------t~-~E~~~A~~~Gad~vk~Fpa------~~~G~~~l~ 142 (206)
T PRK09140 93 DPEVIRRA-VALG-MVVMPG--VA-------------------TP-TEAFAALRAGAQALKLFPA------SQLGPAGIK 142 (206)
T ss_pred CHHHHHHH-HHCC-CcEEcc--cC-------------------CH-HHHHHHHHcCCCEEEECCC------CCCCHHHHH
Confidence 25555443 4443 222233 21 23 4467788899998865331 123478899
Q ss_pred HHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156 251 LLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ 309 (316)
Q Consensus 251 ~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~ 309 (316)
.+++.. ++|+++.||| +.+++.++++.| ++++.+++++ +......+++.+.+++
T Consensus 143 ~l~~~~~~~ipvvaiGGI-~~~n~~~~~~aG--a~~vav~s~l--~~~~~~~~~i~~~a~~ 198 (206)
T PRK09140 143 ALRAVLPPDVPVFAVGGV-TPENLAPYLAAG--AAGFGLGSAL--YRPGQSAEEVAERARA 198 (206)
T ss_pred HHHhhcCCCCeEEEECCC-CHHHHHHHHHCC--CeEEEEehHh--cccccChHHHHHHHHH
Confidence 998766 4999999999 889999999998 9999999999 7654555666655554
No 91
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.68 E-value=4e-07 Score=86.71 Aligned_cols=148 Identities=20% Similarity=0.144 Sum_probs=102.2
Q ss_pred HHHHHHHcCCCEEEeCCee--------------ecC---C------CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEE
Q 021156 146 NSLSYIEEGATHVIVTSYV--------------FNN---G------QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAI 202 (316)
Q Consensus 146 ~~~~~l~~Gad~VVigt~~--------------~~~---~------~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v 202 (316)
.++++.++|+|-|=|...- ++| | ++..+.++++.+.+|++ +.+.+++.. . ..
T Consensus 146 aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d-~~i~vris~--~--~~ 220 (327)
T cd02803 146 AARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPD-FPVGVRLSA--D--DF 220 (327)
T ss_pred HHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCC-ceEEEEech--h--cc
Confidence 4667778999998775431 111 0 12247777777777643 445555431 1 00
Q ss_pred EeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc---------CCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHH
Q 021156 203 VTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK---------LGIDDELVALLGKYSPIPVTYAGGVTTMADLE 273 (316)
Q Consensus 203 ~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~---------~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~ 273 (316)
.-.+|.. .+..++++.+++.|++.+-++........ .+.+++.++.+++.+++||+++||+.+.+++.
T Consensus 221 ~~~g~~~---~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~ 297 (327)
T cd02803 221 VPGGLTL---EEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAE 297 (327)
T ss_pred CCCCCCH---HHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHH
Confidence 0122221 24678899999999998877665443221 24578899999998999999999999999999
Q ss_pred HHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156 274 KIKVAGIGRVDVTVGSALDIFGGNLAYKDVV 304 (316)
Q Consensus 274 ~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~ 304 (316)
++++.| +++.|.+||++ +.+|..++++.
T Consensus 298 ~~l~~g-~aD~V~igR~~--ladP~l~~k~~ 325 (327)
T cd02803 298 EILAEG-KADLVALGRAL--LADPDLPNKAR 325 (327)
T ss_pred HHHHCC-CCCeeeecHHH--HhCccHHHHHh
Confidence 999986 59999999999 98886665543
No 92
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.66 E-value=1.1e-06 Score=87.81 Aligned_cols=184 Identities=16% Similarity=0.168 Sum_probs=120.4
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCCc---ccHHHHHHHHH------hCCCcEEEecCCC----H-HHHHHHHHcCCCEE
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGADP---LSKAAAIEALH------AYPGGLQVGGGIN----S-DNSLSYIEEGATHV 158 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~~---~~~~~i~~~v~------~~~~pl~vGGGIr----~-e~~~~~l~~Gad~V 158 (316)
.+..++.+.+.+.+...+-++|=++.- .....+.+... .-+..+.|||-+. . +.++.+.++|++.+
T Consensus 161 ~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~~~~~~~d~~g~l~V~aav~~~~~~~~r~~~L~~aG~d~I 240 (450)
T TIGR01302 161 IDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKFPHASKDENGRLIVGAAVGTREFDKERAEALVKAGVDVI 240 (450)
T ss_pred CcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcccCCcceEeCCCCEEEEEEecCchhHHHHHHHHHHhCCCEE
Confidence 345567777777888888888865431 12233333222 1235788999884 1 56889999999999
Q ss_pred EeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEee----
Q 021156 159 IVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHG---- 234 (316)
Q Consensus 159 Vigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd---- 234 (316)
+|.++--.+ +.-.+.++++.+.|+ +..++.=++ ...+.++.+.+.|++.|.+.-
T Consensus 241 ~vd~a~g~~-~~~~~~i~~i~~~~~-~~~vi~G~v--------------------~t~~~a~~l~~aGad~i~vg~g~G~ 298 (450)
T TIGR01302 241 VIDSSHGHS-IYVIDSIKEIKKTYP-DLDIIAGNV--------------------ATAEQAKALIDAGADGLRVGIGPGS 298 (450)
T ss_pred EEECCCCcH-hHHHHHHHHHHHhCC-CCCEEEEeC--------------------CCHHHHHHHHHhCCCEEEECCCCCc
Confidence 998854322 112577888888774 222222111 234788899999999885420
Q ss_pred --cCCccccCC-CCHHHHHHHh---hcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHH
Q 021156 235 --VDVEGKKLG-IDDELVALLG---KYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKD 302 (316)
Q Consensus 235 --i~~dG~~~G-~d~eli~~l~---~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~ 302 (316)
.++.-+.-| |.+..+.+++ +..++|||+.|||++..|+.+++.+| ++.|++|+++ -.-...+.+
T Consensus 299 ~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~G--A~~V~~G~~~--a~~~e~pg~ 368 (450)
T TIGR01302 299 ICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAG--ADAVMLGSLL--AGTTESPGE 368 (450)
T ss_pred CCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcC--CCEEEECchh--hcCCcCCCc
Confidence 122211223 3566666664 34689999999999999999999999 9999999998 433344433
No 93
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=98.65 E-value=4.2e-06 Score=76.90 Aligned_cols=169 Identities=12% Similarity=0.116 Sum_probs=121.9
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCC--cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGAD--PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQ 169 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~--~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~ 169 (316)
-||.++|+.|.+.|+..+ =|.-|.. ..+.+.+..+.+.+++|+.-=..|- ..++.....+|||-|.+=...+.
T Consensus 61 ~d~~~~A~~y~~~GA~aI-SVlTe~~~F~Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L~--- 136 (247)
T PRK13957 61 YHPVQIAKTYETLGASAI-SVLTDQSYFGGSLEDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAILLIVRILT--- 136 (247)
T ss_pred CCHHHHHHHHHHCCCcEE-EEEcCCCcCCCCHHHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhCC---
Confidence 489999999999999776 3344433 2344444444446789999999996 68899999999999988777665
Q ss_pred CCHHHHHHHHH---HhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCH
Q 021156 170 MDLERLKDLVR---VVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDD 246 (316)
Q Consensus 170 ~~~eli~ei~~---~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~ 246 (316)
++.++++.+ .+| +++- |-++ ..+.++...+.|++-+-++.++.... ..|.
T Consensus 137 --~~~l~~l~~~a~~lG-------le~L-------VEVh---------~~~El~~a~~~ga~iiGINnRdL~t~--~vd~ 189 (247)
T PRK13957 137 --PSQIKSFLKHASSLG-------MDVL-------VEVH---------TEDEAKLALDCGAEIIGINTRDLDTF--QIHQ 189 (247)
T ss_pred --HHHHHHHHHHHHHcC-------CceE-------EEEC---------CHHHHHHHHhCCCCEEEEeCCCCccc--eECH
Confidence 444555443 344 3331 2111 23456677788999888898887632 3477
Q ss_pred HHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156 247 ELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN 297 (316)
Q Consensus 247 eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~ 297 (316)
+...++.... +..+|+.+||.+++|+.++.+ + ++++.||+++ ....
T Consensus 190 ~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~-~--~davLvG~~l--m~~~ 237 (247)
T PRK13957 190 NLVEEVAAFLPPNIVKVGESGIESRSDLDKFRK-L--VDAALIGTYF--MEKK 237 (247)
T ss_pred HHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHH-h--CCEEEECHHH--hCCC
Confidence 7777776554 456899999999999999886 3 7999999999 8755
No 94
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=98.65 E-value=4.9e-06 Score=73.81 Aligned_cols=180 Identities=19% Similarity=0.195 Sum_probs=104.9
Q ss_pred HHHHHHHHHHcCCCcceEEEecCCc-c---cHHHHHHHHHh-CCCcEEEecCCC-H-HHHHHHHHcCCCEEEeCCeeecC
Q 021156 95 AAEFANLYKEDGLTGGHAIMLGADP-L---SKAAAIEALHA-YPGGLQVGGGIN-S-DNSLSYIEEGATHVIVTSYVFNN 167 (316)
Q Consensus 95 p~e~a~~~~~~G~~~l~lvDLda~~-~---~~~~i~~~v~~-~~~pl~vGGGIr-~-e~~~~~l~~Gad~VVigt~~~~~ 167 (316)
..+.++...+.|++.+|+=..|+.. + ....+.+.+++ ++.|+.+.==+. . +.++.+.++|+|.|.+--.....
T Consensus 14 ~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~vh~~~~~~ 93 (211)
T cd00429 14 LGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITFHAEATDH 93 (211)
T ss_pred HHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEECccchhh
Confidence 4456777778899999995555431 1 11233444443 334444443334 3 55888899999998664332222
Q ss_pred CCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHH
Q 021156 168 GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDE 247 (316)
Q Consensus 168 ~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~e 247 (316)
+....+..+.+| +.+.+++. .. +..+.++.+... ++.+++..+...++....++.
T Consensus 94 ----~~~~~~~~~~~~---~~~g~~~~--~~---------------~~~~~~~~~~~~-~d~i~~~~~~~g~tg~~~~~~ 148 (211)
T cd00429 94 ----LHRTIQLIKELG---MKAGVALN--PG---------------TPVEVLEPYLDE-VDLVLVMSVNPGFGGQKFIPE 148 (211)
T ss_pred ----HHHHHHHHHHCC---CeEEEEec--CC---------------CCHHHHHHHHhh-CCEEEEEEECCCCCCcccCHH
Confidence 222222223343 33334332 00 123455555433 788877665433333344554
Q ss_pred ---HHHHHhhcC-----CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156 248 ---LVALLGKYS-----PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA 305 (316)
Q Consensus 248 ---li~~l~~~~-----~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~ 305 (316)
.++++++.. ++|+++.|||+. +++.++.+.| ++++++|+++ ++. -++++..+
T Consensus 149 ~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~g--ad~iivgsai--~~~-~~~~~~~~ 208 (211)
T cd00429 149 VLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAG--ADVLVAGSAL--FGS-DDYAEAIK 208 (211)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcC--CCEEEECHHH--hCC-CCHHHHHH
Confidence 444444444 489999999996 9999999998 9999999999 743 35544443
No 95
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.64 E-value=5.2e-07 Score=85.15 Aligned_cols=158 Identities=16% Similarity=0.127 Sum_probs=103.7
Q ss_pred EEEecCCC-H-HHHHHHHHc---CCCEEEeCCeeecC-C--C--CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeC
Q 021156 136 LQVGGGIN-S-DNSLSYIEE---GATHVIVTSYVFNN-G--Q--MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTD 205 (316)
Q Consensus 136 l~vGGGIr-~-e~~~~~l~~---Gad~VVigt~~~~~-~--~--~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~ 205 (316)
++++|-.. . +.++++.+. |||.+-++...-+. + . .+|+.+.++.+.. ++.+-+.+-+|.. .
T Consensus 96 vsi~g~~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v-~~~~~iPv~vKl~--------p 166 (294)
T cd04741 96 ISVTGSAEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAV-KAAYSIPVGVKTP--------P 166 (294)
T ss_pred EECCCCHHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHH-HHhcCCCEEEEeC--------C
Confidence 56666622 2 335555554 69998886653221 0 1 1589999999887 3444344544421 2
Q ss_pred CcceecccCHHHHHHHHHHc--CCCEEEEee-------cC--Cc----------cccCCC--C---HHHHHHHhhcC--C
Q 021156 206 RWQKFSDVYLDERVLDFLAS--YADEFLVHG-------VD--VE----------GKKLGI--D---DELVALLGKYS--P 257 (316)
Q Consensus 206 gw~~~~~~~~~e~a~~~~~~--Ga~~ilvtd-------i~--~d----------G~~~G~--d---~eli~~l~~~~--~ 257 (316)
+|.. .++.+.++.+.+. |++.++.++ ++ +. |-++|+ . ++.++++++.+ +
T Consensus 167 ~~~~---~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ 243 (294)
T cd04741 167 YTDP---AQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSE 243 (294)
T ss_pred CCCH---HHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCC
Confidence 3321 1356777888788 899887421 12 11 111232 2 34567777777 4
Q ss_pred CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhc-cCcccHHHHHHHHHh
Q 021156 258 IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIF-GGNLAYKDVVAWHAQ 309 (316)
Q Consensus 258 iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~-~g~~~~~~~~~~~~~ 309 (316)
+|||++|||.|.+|+.+.+.+| +++|+|++++ + +|++.++++.+.+..
T Consensus 244 ipIig~GGI~s~~da~e~l~aG--A~~Vqv~ta~--~~~gp~~~~~i~~~L~~ 292 (294)
T cd04741 244 IQIIGVGGVLDGRGAFRMRLAG--ASAVQVGTAL--GKEGPKVFARIEKELED 292 (294)
T ss_pred CCEEEeCCCCCHHHHHHHHHcC--CCceeEchhh--hhcCchHHHHHHHHHHh
Confidence 9999999999999999999988 9999999999 6 699999998876654
No 96
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=98.63 E-value=8.2e-07 Score=84.99 Aligned_cols=168 Identities=23% Similarity=0.218 Sum_probs=106.5
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEEecCC--C--H-HHHHHHHHcCCCEEEeCCeeecCC
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGI--N--S-DNSLSYIEEGATHVIVTSYVFNNG 168 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~vGGGI--r--~-e~~~~~l~~Gad~VVigt~~~~~~ 168 (316)
+| ++|...+++|..++ +-.. . ..+...+.++++..++.++..+ + . +.++.++++|++.+++.++.-..
T Consensus 47 ~~-~ma~ava~~GglGv--i~~~--~-~~~~~~~~i~~vk~~l~v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~- 119 (325)
T cd00381 47 ES-EMAIAMARLGGIGV--IHRN--M-SIEEQAEEVRKVKGRLLVGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHS- 119 (325)
T ss_pred cH-HHHHHHHHCCCEEE--EeCC--C-CHHHHHHHHHHhccCceEEEecCCChhHHHHHHHHHhcCCCEEEEECCCCCc-
Confidence 45 48888888874332 2211 1 2233344444444445555544 3 2 56889999999999987754221
Q ss_pred CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEee------cCCccccC
Q 021156 169 QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHG------VDVEGKKL 242 (316)
Q Consensus 169 ~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd------i~~dG~~~ 242 (316)
+...+.++++.+.++ +..++.=+ +...+.++.+.+.|++.|.++- .++.-+..
T Consensus 120 ~~~~~~i~~ik~~~p-~v~Vi~G~--------------------v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~ 178 (325)
T cd00381 120 VYVIEMIKFIKKKYP-NVDVIAGN--------------------VVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGV 178 (325)
T ss_pred HHHHHHHHHHHHHCC-CceEEECC--------------------CCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCC
Confidence 111456667766552 21111101 1234788999999999987631 11111112
Q ss_pred C-CCHHHHHHHhhcC---CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 243 G-IDDELVALLGKYS---PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 243 G-~d~eli~~l~~~~---~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
| +++.++..+.+.. ++|||++|||.+..|+.+++.+| +++|++|+.+
T Consensus 179 g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~G--A~~VmiGt~f 229 (325)
T cd00381 179 GVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAG--ADAVMLGSLL 229 (325)
T ss_pred CCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcC--CCEEEecchh
Confidence 3 4777777776543 69999999999999999999998 9999999987
No 97
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.62 E-value=6.4e-06 Score=73.29 Aligned_cols=156 Identities=16% Similarity=0.048 Sum_probs=101.7
Q ss_pred HHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCC---cEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHH
Q 021156 97 EFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPG---GLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLE 173 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~---pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~e 173 (316)
+.+. ..+.|++.+++=+=+..........+.+.+... ++++- ++.+-++..|++.|=++.....
T Consensus 19 ~~~~-~~~~g~~~iqlR~k~~~~~~~~~~~~~l~~~~~~~~~liin-----~~~~la~~~~~~gvHl~~~~~~------- 85 (201)
T PRK07695 19 AVAM-QIHSEVDYIHIREREKSAKELYEGVESLLKKGVPASKLIIN-----DRVDIALLLNIHRVQLGYRSFS------- 85 (201)
T ss_pred HHHH-HHhCCCCEEEEcCCCCCHHHHHHHHHHHHHhCCCCCeEEEE-----CHHHHHHHcCCCEEEeCcccCC-------
Confidence 3444 445678877776544332222223333333222 24433 3577788889999988764322
Q ss_pred HHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc---CCCCHHHHH
Q 021156 174 RLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK---LGIDDELVA 250 (316)
Q Consensus 174 li~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~---~G~d~eli~ 250 (316)
++++.+.++ +. .+++.+. + .+.++++.+.|++.+++..+....+. .+.+++.++
T Consensus 86 -~~~~r~~~~-~~-~ig~s~~-------------------s-~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~ 142 (201)
T PRK07695 86 -VRSVREKFP-YL-HVGYSVH-------------------S-LEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELS 142 (201)
T ss_pred -HHHHHHhCC-CC-EEEEeCC-------------------C-HHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHH
Confidence 344445553 32 2344332 1 34578888999999876444433333 234789999
Q ss_pred HHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 251 LLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 251 ~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
++.+.+++||++.||| +.+++.++.+.| +++|.+|+++
T Consensus 143 ~~~~~~~ipvia~GGI-~~~~~~~~~~~G--a~gvav~s~i 180 (201)
T PRK07695 143 DIARALSIPVIAIGGI-TPENTRDVLAAG--VSGIAVMSGI 180 (201)
T ss_pred HHHHhCCCCEEEEcCC-CHHHHHHHHHcC--CCEEEEEHHH
Confidence 9988889999999999 999999999988 9999999999
No 98
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=98.61 E-value=9.6e-06 Score=73.51 Aligned_cols=184 Identities=18% Similarity=0.154 Sum_probs=120.9
Q ss_pred CHHH---HHHHHHHcCCCcceEEEecCCc-cc---HHHHHHHHHh--CCCcEEEecCC-CHHH-HHHHHHcCCCEEEeCC
Q 021156 94 SAAE---FANLYKEDGLTGGHAIMLGADP-LS---KAAAIEALHA--YPGGLQVGGGI-NSDN-SLSYIEEGATHVIVTS 162 (316)
Q Consensus 94 ~p~e---~a~~~~~~G~~~l~lvDLda~~-~~---~~~i~~~v~~--~~~pl~vGGGI-r~e~-~~~~l~~Gad~VVigt 162 (316)
|+.. -.+.+.+.|++++|+==+|+.. +| -+.+++.+++ .+.|+.|===+ +.+. ++.+.++||+.+.+-.
T Consensus 10 d~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~ 89 (220)
T PRK08883 10 DFARLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHV 89 (220)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCcccCccccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcc
Confidence 5554 4455566799999998888763 22 3345566654 35554333223 3544 8889999999999988
Q ss_pred eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccC
Q 021156 163 YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKL 242 (316)
Q Consensus 163 ~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~ 242 (316)
++..+ +..+-+..+..| -+.-+++.-. .+.+..+.+.+ -++.+++..++..-..+
T Consensus 90 Ea~~~----~~~~l~~ik~~g-~k~GlalnP~-------------------Tp~~~i~~~l~-~~D~vlvMtV~PGfgGq 144 (220)
T PRK08883 90 EASEH----VDRTLQLIKEHG-CQAGVVLNPA-------------------TPLHHLEYIMD-KVDLILLMSVNPGFGGQ 144 (220)
T ss_pred cCccc----HHHHHHHHHHcC-CcEEEEeCCC-------------------CCHHHHHHHHH-hCCeEEEEEecCCCCCc
Confidence 87665 654445556666 3444555432 23455555655 48999988886643333
Q ss_pred CC---CHHHHHHHhhcC-----CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156 243 GI---DDELVALLGKYS-----PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA 308 (316)
Q Consensus 243 G~---d~eli~~l~~~~-----~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~ 308 (316)
.+ .++.++++++.. ++|+.+-|||. .+.+.++.+.| ++++++|+++ |... ++++..+..+
T Consensus 145 ~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aG--Ad~vVvGSaI--f~~~-d~~~~i~~l~ 212 (220)
T PRK08883 145 SFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAG--ADMFVAGSAI--FGQP-DYKAVIDEMR 212 (220)
T ss_pred eecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcC--CCEEEEeHHH--hCCC-CHHHHHHHHH
Confidence 34 445666665543 38999999999 89999999998 9999999999 6433 4555544443
No 99
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=98.61 E-value=2.5e-06 Score=81.70 Aligned_cols=141 Identities=20% Similarity=0.187 Sum_probs=93.5
Q ss_pred HHHHHHcCCCEEEeCCeeec-CCC----CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156 147 SLSYIEEGATHVIVTSYVFN-NGQ----MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD 221 (316)
Q Consensus 147 ~~~~l~~Gad~VVigt~~~~-~~~----~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~ 221 (316)
++.+-++|+|.+-++..... ++. ..++.+.++.+.+ ++.+-+.+-+| ..... .+..++++.
T Consensus 118 a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v-~~~~~iPv~vK---------l~p~~----~~~~~~a~~ 183 (325)
T cd04739 118 ARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAV-KSAVTIPVAVK---------LSPFF----SALAHMAKQ 183 (325)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHH-HhccCCCEEEE---------cCCCc----cCHHHHHHH
Confidence 55555689999988775422 111 1124556666655 23222333333 22211 157789999
Q ss_pred HHHcCCCEEEEeecC------C-------ccccCCC-----CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcC
Q 021156 222 FLASYADEFLVHGVD------V-------EGKKLGI-----DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRV 283 (316)
Q Consensus 222 ~~~~Ga~~ilvtdi~------~-------dG~~~G~-----d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~ 283 (316)
+++.|++.+.+|... . .+.++|+ -+++++++.+.+++|||++|||.|.+|+.+.+.+| ++
T Consensus 184 l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aG--A~ 261 (325)
T cd04739 184 LDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVHDAEDVVKYLLAG--AD 261 (325)
T ss_pred HHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCCCHHHHHHHHHcC--CC
Confidence 999999999887643 1 1122333 24667788877899999999999999999999988 99
Q ss_pred EEEEccchhhcc-CcccHHHHHH
Q 021156 284 DVTVGSALDIFG-GNLAYKDVVA 305 (316)
Q Consensus 284 gVivG~Al~~~~-g~~~~~~~~~ 305 (316)
.|.||+++ +. |+-.+.++.+
T Consensus 262 ~Vqv~ta~--~~~gp~~~~~i~~ 282 (325)
T cd04739 262 VVMTTSAL--LRHGPDYIGTLLA 282 (325)
T ss_pred eeEEehhh--hhcCchHHHHHHH
Confidence 99999999 55 6755555444
No 100
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=98.61 E-value=5.7e-06 Score=72.05 Aligned_cols=164 Identities=23% Similarity=0.172 Sum_probs=107.0
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHH----HhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEAL----HAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQ 169 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v----~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~ 169 (316)
+..+..+.+.+.|++.+|+=+-+..........+.+ ...++++.+- +.++.+.++|++.+-+......
T Consensus 13 ~~~~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~-----~~~~~a~~~g~~~vh~~~~~~~--- 84 (196)
T cd00564 13 DLLEVVEAALKGGVTLVQLREKDLSARELLELARALRELCRKYGVPLIIN-----DRVDLALAVGADGVHLGQDDLP--- 84 (196)
T ss_pred hHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEe-----ChHHHHHHcCCCEEecCcccCC---
Confidence 456777777788999988877665432222222222 2345666653 3577788999997766653221
Q ss_pred CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc----CCCC
Q 021156 170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK----LGID 245 (316)
Q Consensus 170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~----~G~d 245 (316)
...+.++ .+ ....+++.+. ++ +.+.++.+.|++.+.+..+...+.. ....
T Consensus 85 --~~~~~~~---~~-~~~~~g~~~~-------------------t~-~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~ 138 (196)
T cd00564 85 --VAEARAL---LG-PDLIIGVSTH-------------------SL-EEALRAEELGADYVGFGPVFPTPTKPGAGPPLG 138 (196)
T ss_pred --HHHHHHH---cC-CCCEEEeeCC-------------------CH-HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCC
Confidence 3333333 22 1223333321 12 4567788889999887655332222 2347
Q ss_pred HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccC
Q 021156 246 DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGG 296 (316)
Q Consensus 246 ~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g 296 (316)
++.++++++..++||++.|||. .+++.++.+.| ++++++|+++ +..
T Consensus 139 ~~~~~~~~~~~~~pv~a~GGi~-~~~i~~~~~~G--a~~i~~g~~i--~~~ 184 (196)
T cd00564 139 LELLREIAELVEIPVVAIGGIT-PENAAEVLAAG--ADGVAVISAI--TGA 184 (196)
T ss_pred HHHHHHHHHhCCCCEEEECCCC-HHHHHHHHHcC--CCEEEEehHh--hcC
Confidence 8899999887889999999995 69999999998 9999999999 643
No 101
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=98.60 E-value=2.4e-06 Score=75.47 Aligned_cols=157 Identities=20% Similarity=0.252 Sum_probs=107.6
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEEEecCC-C-HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQVGGGI-N-SDNSLSYIEEGATHVIVTSYVFNNGQ 169 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~vGGGI-r-~e~~~~~l~~Gad~VVigt~~~~~~~ 169 (316)
.+..++++.+.+.|++.+.+-. . ..+....++.++ ..+ .+.+|+|- - .++++.+.++||+.++.+.. +
T Consensus 16 ~~~~~~~~~l~~~G~~~vev~~-~--~~~~~~~i~~l~~~~~-~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~~---~-- 86 (190)
T cd00452 16 EDALALAEALIEGGIRAIEITL-R--TPGALEAIRALRKEFP-EALIGAGTVLTPEQADAAIAAGAQFIVSPGL---D-- 86 (190)
T ss_pred HHHHHHHHHHHHCCCCEEEEeC-C--ChhHHHHHHHHHHHCC-CCEEEEEeCCCHHHHHHHHHcCCCEEEcCCC---C--
Confidence 3566788888888888655442 2 222334445554 444 26677766 3 58899999999999987643 2
Q ss_pred CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHH
Q 021156 170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELV 249 (316)
Q Consensus 170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli 249 (316)
++.++. .+.++ ..+++.+. ++ +.+.++.+.|++.+-+...+ . ...+.+
T Consensus 87 --~~~~~~-~~~~~-~~~i~gv~---------------------t~-~e~~~A~~~Gad~i~~~p~~---~---~g~~~~ 134 (190)
T cd00452 87 --PEVVKA-ANRAG-IPLLPGVA---------------------TP-TEIMQALELGADIVKLFPAE---A---VGPAYI 134 (190)
T ss_pred --HHHHHH-HHHcC-CcEECCcC---------------------CH-HHHHHHHHCCCCEEEEcCCc---c---cCHHHH
Confidence 555444 44454 23333221 23 55777788999988764321 1 145678
Q ss_pred HHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156 250 ALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG 295 (316)
Q Consensus 250 ~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~ 295 (316)
+.+++.. ++|+++.||| +.+++.++++.| ++++.+++++ +.
T Consensus 135 ~~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G--~~~v~v~s~i--~~ 176 (190)
T cd00452 135 KALKGPFPQVRFMPTGGV-SLDNAAEWLAAG--VVAVGGGSLL--PK 176 (190)
T ss_pred HHHHhhCCCCeEEEeCCC-CHHHHHHHHHCC--CEEEEEchhc--ch
Confidence 8887655 5999999999 999999999998 9999999999 73
No 102
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=98.59 E-value=2.5e-06 Score=78.78 Aligned_cols=172 Identities=20% Similarity=0.168 Sum_probs=112.6
Q ss_pred ccCHHHHHHHHHHcCCCcceEEEecCCc-ccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156 92 DKSAAEFANLYKEDGLTGGHAIMLGADP-LSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQ 169 (316)
Q Consensus 92 ~~~p~e~a~~~~~~G~~~l~lvDLda~~-~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~ 169 (316)
..||.++|+.|.+.|+..+-+.==.--. .....+..+.+.+++|+.-===|- ..++.....+|||-|.+=...+.
T Consensus 67 ~~d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L~--- 143 (254)
T PF00218_consen 67 DFDPAEIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIAAILS--- 143 (254)
T ss_dssp S-SHHHHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-SEEEEEGGGSG---
T ss_pred cCCHHHHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCCEeehhHHhCC---
Confidence 3589999999999998866553211111 233334444446888887633332 47899999999999988777777
Q ss_pred CCHHHHHHHH---HHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCH
Q 021156 170 MDLERLKDLV---RVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDD 246 (316)
Q Consensus 170 ~~~eli~ei~---~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~ 246 (316)
++.++++. +.+| +++- |-++. .+.++...+.|++-|-++.++.... ..|+
T Consensus 144 --~~~l~~l~~~a~~lG-------le~l-------VEVh~---------~~El~~al~~~a~iiGINnRdL~tf--~vd~ 196 (254)
T PF00218_consen 144 --DDQLEELLELAHSLG-------LEAL-------VEVHN---------EEELERALEAGADIIGINNRDLKTF--EVDL 196 (254)
T ss_dssp --HHHHHHHHHHHHHTT--------EEE-------EEESS---------HHHHHHHHHTT-SEEEEESBCTTTC--CBHT
T ss_pred --HHHHHHHHHHHHHcC-------CCeE-------EEECC---------HHHHHHHHHcCCCEEEEeCccccCc--ccCh
Confidence 45555554 4455 3331 22221 2445666788999888898876522 3577
Q ss_pred HHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156 247 ELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN 297 (316)
Q Consensus 247 eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~ 297 (316)
+...++.... ++.+|+.+||.+++|+.++.+.| +++++||+++ +..+
T Consensus 197 ~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G--~davLVGe~l--m~~~ 245 (254)
T PF00218_consen 197 NRTEELAPLIPKDVIVISESGIKTPEDARRLARAG--ADAVLVGEAL--MRSP 245 (254)
T ss_dssp HHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT---SEEEESHHH--HTSS
T ss_pred HHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCC--CCEEEECHHH--hCCC
Confidence 7777777643 47899999999999999999998 9999999999 8665
No 103
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=98.59 E-value=4.2e-07 Score=87.03 Aligned_cols=138 Identities=21% Similarity=0.220 Sum_probs=93.7
Q ss_pred cCCCEEEeCCeeecC-C---CCCHHHHHHHHHHhcCceEE-----EeeeeeecCCeeEEEeCCcceecccCHHHHHHHHH
Q 021156 153 EGATHVIVTSYVFNN-G---QMDLERLKDLVRVVGKQRLV-----LDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFL 223 (316)
Q Consensus 153 ~Gad~VVigt~~~~~-~---~~~~eli~ei~~~~G~~~Iv-----vslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~ 223 (316)
.+||.+.++...-+. + ..+++.+.++.+.. ++.+- +.+-+|. . ..|.. -+..++++.++
T Consensus 159 ~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av-~~~~~~~~~~~Pv~vKl-------~-~~~~~---~~~~~ia~~l~ 226 (327)
T cd04738 159 PYADYLVVNVSSPNTPGLRDLQGKEALRELLTAV-KEERNKLGKKVPLLVKI-------A-PDLSD---EELEDIADVAL 226 (327)
T ss_pred hhCCEEEEECCCCCCCccccccCHHHHHHHHHHH-HHHHhhcccCCCeEEEe-------C-CCCCH---HHHHHHHHHHH
Confidence 348888875432211 0 12477777777665 22221 3344431 1 12321 14678899999
Q ss_pred HcCCCEEEEeecCC-------------ccccCCC-----CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcC
Q 021156 224 ASYADEFLVHGVDV-------------EGKKLGI-----DDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRV 283 (316)
Q Consensus 224 ~~Ga~~ilvtdi~~-------------dG~~~G~-----d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~ 283 (316)
+.|++.+.+|.... .|.++|+ .++.++.+++.+ ++||+++|||.|.+|+.+++..| ++
T Consensus 227 ~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aG--Ad 304 (327)
T cd04738 227 EHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAG--AS 304 (327)
T ss_pred HcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcC--CC
Confidence 99999998776422 1234554 268888998887 79999999999999999999987 99
Q ss_pred EEEEccchhhccCcccHHHHHH
Q 021156 284 DVTVGSALDIFGGNLAYKDVVA 305 (316)
Q Consensus 284 gVivG~Al~~~~g~~~~~~~~~ 305 (316)
.|+|||++ .++|++.++++.+
T Consensus 305 ~V~vg~~~-~~~gP~~~~~i~~ 325 (327)
T cd04738 305 LVQLYTGL-VYEGPGLVKRIKR 325 (327)
T ss_pred HHhccHHH-HhhCcHHHHHHHh
Confidence 99999998 2347888887754
No 104
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.58 E-value=3.1e-06 Score=85.28 Aligned_cols=176 Identities=19% Similarity=0.189 Sum_probs=116.5
Q ss_pred ccCHHHHHHHHHHcCCCcceEEEecCCc---ccHHHHHHHHHh------CCCcEEEecCCC-----HHHHHHHHHcCCCE
Q 021156 92 DKSAAEFANLYKEDGLTGGHAIMLGADP---LSKAAAIEALHA------YPGGLQVGGGIN-----SDNSLSYIEEGATH 157 (316)
Q Consensus 92 ~~~p~e~a~~~~~~G~~~l~lvDLda~~---~~~~~i~~~v~~------~~~pl~vGGGIr-----~e~~~~~l~~Gad~ 157 (316)
+.+..++++.+.+.+...+-++|=++.. .....+.+.+.. ....+.||+.+. .+.++.++++|++.
T Consensus 164 ~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~~agvdv 243 (486)
T PRK05567 164 GTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAEALVEAGVDV 243 (486)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeecccCcchHHHHHHHHHhCCCE
Confidence 3455677788888888888888765431 223334333321 124688999886 26799999999999
Q ss_pred EEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEE--ee-
Q 021156 158 VIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLV--HG- 234 (316)
Q Consensus 158 VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilv--td- 234 (316)
+++.++--.. +--.+.++++.+.++ +..++.=+ +...+.++.+.+.|++.|.+ +.
T Consensus 244 ivvD~a~g~~-~~vl~~i~~i~~~~p-~~~vi~g~--------------------v~t~e~a~~l~~aGad~i~vg~g~g 301 (486)
T PRK05567 244 LVVDTAHGHS-EGVLDRVREIKAKYP-DVQIIAGN--------------------VATAEAARALIEAGADAVKVGIGPG 301 (486)
T ss_pred EEEECCCCcc-hhHHHHHHHHHhhCC-CCCEEEec--------------------cCCHHHHHHHHHcCCCEEEECCCCC
Confidence 9887752211 112456777776663 21112111 12347888999999998853 11
Q ss_pred ---cCCccccCC-CCHHHHHHHhhc---CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 235 ---VDVEGKKLG-IDDELVALLGKY---SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 235 ---i~~dG~~~G-~d~eli~~l~~~---~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
.++.-+.-| |+++.+.++++. .++|||+.|||++..|+.+++.+| ++.||+|+++
T Consensus 302 s~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~G--A~~v~~G~~~ 363 (486)
T PRK05567 302 SICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAG--ASAVMLGSML 363 (486)
T ss_pred ccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhC--CCEEEECccc
Confidence 111111222 578888777653 479999999999999999999999 8999999998
No 105
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.56 E-value=4.7e-06 Score=79.99 Aligned_cols=158 Identities=17% Similarity=0.137 Sum_probs=96.5
Q ss_pred HhCCCcEEEecCC-CHH---H-HHHHHHcCCCEEEeCCeeecC-----CCCCHHHHHHHHHHhcCceEEEeeeeeecCCe
Q 021156 130 HAYPGGLQVGGGI-NSD---N-SLSYIEEGATHVIVTSYVFNN-----GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGK 199 (316)
Q Consensus 130 ~~~~~pl~vGGGI-r~e---~-~~~~l~~Gad~VVigt~~~~~-----~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~ 199 (316)
++.+.|+++.=+- ..+ + ++.+-++|+|.+-++...-.. |.-.++.+.++.+.. ++.+-+.+-+|
T Consensus 98 ~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v-~~~~~iPV~vK----- 171 (334)
T PRK07565 98 EAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAV-KSAVSIPVAVK----- 171 (334)
T ss_pred HhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHH-HhccCCcEEEE-----
Confidence 3445666544322 222 3 555566899999886432111 111123444555544 22222333333
Q ss_pred eEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCc-------------cccCCCC-----HHHHHHHhhcCCCcEE
Q 021156 200 YAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVE-------------GKKLGID-----DELVALLGKYSPIPVT 261 (316)
Q Consensus 200 ~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~d-------------G~~~G~d-----~eli~~l~~~~~iPVI 261 (316)
..... .+..++++.+++.|++.|.++..... +-++|+. ++.+.++.+.+++|||
T Consensus 172 ----l~p~~----~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIi 243 (334)
T PRK07565 172 ----LSPYF----SNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLA 243 (334)
T ss_pred ----eCCCc----hhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEE
Confidence 22110 14678899999999999987664321 1122321 4567777777799999
Q ss_pred EEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc-CcccHHHHHH
Q 021156 262 YAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG-GNLAYKDVVA 305 (316)
Q Consensus 262 asGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~-g~~~~~~~~~ 305 (316)
++|||.|.+|+.+.+.+| +++|.+|+++ +. |+-.++++.+
T Consensus 244 g~GGI~s~~Da~e~l~aG--A~~V~v~t~~--~~~g~~~~~~i~~ 284 (334)
T PRK07565 244 ATTGVHDAEDVIKMLLAG--ADVVMIASAL--LRHGPDYIGTILR 284 (334)
T ss_pred EECCCCCHHHHHHHHHcC--CCceeeehHH--hhhCcHHHHHHHH
Confidence 999999999999999988 9999999998 54 6644444444
No 106
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.56 E-value=5.4e-07 Score=86.59 Aligned_cols=148 Identities=16% Similarity=0.133 Sum_probs=103.9
Q ss_pred HHHHHHHcCCCEEEeCCe----------eec----C---C------CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEE
Q 021156 146 NSLSYIEEGATHVIVTSY----------VFN----N---G------QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAI 202 (316)
Q Consensus 146 ~~~~~l~~Gad~VVigt~----------~~~----~---~------~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v 202 (316)
.++++.++|+|-|=|... ... | | ++..+.++++.+.+| +.+.+.+++...+ .
T Consensus 154 aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG-~d~~v~vris~~~----~ 228 (338)
T cd04733 154 AARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVG-PGFPVGIKLNSAD----F 228 (338)
T ss_pred HHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcC-CCCeEEEEEcHHH----c
Confidence 356677899999977533 111 1 1 234578888888887 4455666653111 0
Q ss_pred EeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc------------CCCCHHHHHHHhhcCCCcEEEEeCCCCHH
Q 021156 203 VTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK------------LGIDDELVALLGKYSPIPVTYAGGVTTMA 270 (316)
Q Consensus 203 ~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~------------~G~d~eli~~l~~~~~iPVIasGGI~s~e 270 (316)
.-.||.. -+..++++.+++.|++.+-+|....+... .+..++..+++++.+++||+++|++.+++
T Consensus 229 ~~~g~~~---eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~ 305 (338)
T cd04733 229 QRGGFTE---EDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRA 305 (338)
T ss_pred CCCCCCH---HHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHH
Confidence 1134532 14678899999999998876654322111 22346788899998999999999999999
Q ss_pred HHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156 271 DLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV 304 (316)
Q Consensus 271 Di~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~ 304 (316)
++.++++.| .++.|.+||++ +.+|..++.++
T Consensus 306 ~a~~~l~~g-~aD~V~lgR~~--iadP~~~~k~~ 336 (338)
T cd04733 306 AMEQALASG-AVDGIGLARPL--ALEPDLPNKLL 336 (338)
T ss_pred HHHHHHHcC-CCCeeeeChHh--hhCccHHHHHh
Confidence 999999998 59999999999 99998776654
No 107
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.55 E-value=3.4e-06 Score=85.09 Aligned_cols=175 Identities=19% Similarity=0.200 Sum_probs=114.6
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCCc---ccHHHHHHH------HHhCCCcEEEecCC--CH---HHHHHHHHcCCCEE
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGADP---LSKAAAIEA------LHAYPGGLQVGGGI--NS---DNSLSYIEEGATHV 158 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~~---~~~~~i~~~------v~~~~~pl~vGGGI--r~---e~~~~~l~~Gad~V 158 (316)
.+..+..+.+.+.+...+-++|=++.- .....+.+. ++.-...+.||.-+ +. +.++.+.++|++.+
T Consensus 178 ~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~~~~~~~~l~~ag~d~i 257 (495)
T PTZ00314 178 ISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDIERAAALIEAGVDVL 257 (495)
T ss_pred CCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCchhhhccCCCEEEEEEECCCHHHHHHHHHHHHCCCCEE
Confidence 355677778888888888888755421 111222221 22224578887766 32 55889999999999
Q ss_pred EeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEe-----
Q 021156 159 IVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVH----- 233 (316)
Q Consensus 159 Vigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvt----- 233 (316)
+++++--.+ ....+.++++.+.|+ +..++.=+ +...+.++.+.+.|++.|.+.
T Consensus 258 ~id~a~G~s-~~~~~~i~~ik~~~~-~~~v~aG~--------------------V~t~~~a~~~~~aGad~I~vg~g~Gs 315 (495)
T PTZ00314 258 VVDSSQGNS-IYQIDMIKKLKSNYP-HVDIIAGN--------------------VVTADQAKNLIDAGADGLRIGMGSGS 315 (495)
T ss_pred EEecCCCCc-hHHHHHHHHHHhhCC-CceEEECC--------------------cCCHHHHHHHHHcCCCEEEECCcCCc
Confidence 998852111 112578888888874 21111111 123478889999999987541
Q ss_pred -ecCCccccCC-CCHHHHHHHh---hcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 234 -GVDVEGKKLG-IDDELVALLG---KYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 234 -di~~dG~~~G-~d~eli~~l~---~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
..++.-+.-| |.+..+.+++ +..++|+|+.|||++..|+.+++.+| +++||+|+++
T Consensus 316 ~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~G--A~~Vm~G~~~ 376 (495)
T PTZ00314 316 ICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALALG--ADCVMLGSLL 376 (495)
T ss_pred ccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcC--CCEEEECchh
Confidence 1222222223 4566655554 44689999999999999999999999 9999999998
No 108
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.54 E-value=3.8e-07 Score=87.94 Aligned_cols=141 Identities=23% Similarity=0.189 Sum_probs=95.9
Q ss_pred cCCCEEEeCCeeecC-C---CCCHHHHHHHHHHhcCceEE-----EeeeeeecCCeeEEEeC-CcceecccCHHHHHHHH
Q 021156 153 EGATHVIVTSYVFNN-G---QMDLERLKDLVRVVGKQRLV-----LDLSCRKKDGKYAIVTD-RWQKFSDVYLDERVLDF 222 (316)
Q Consensus 153 ~Gad~VVigt~~~~~-~---~~~~eli~ei~~~~G~~~Iv-----vslD~k~~~g~~~v~~~-gw~~~~~~~~~e~a~~~ 222 (316)
.+||.+.++...-+. + ..+++.+.++.+.. ++.+- +.+-+| +. ++.. -+..++++.+
T Consensus 168 ~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aV-r~~~~~~~~~~PV~vK---------lsp~~~~---~~~~~ia~~l 234 (344)
T PRK05286 168 PYADYFTVNISSPNTPGLRDLQYGEALDELLAAL-KEAQAELHGYVPLLVK---------IAPDLSD---EELDDIADLA 234 (344)
T ss_pred hhCCEEEEEccCCCCCCcccccCHHHHHHHHHHH-HHHHhccccCCceEEE---------eCCCCCH---HHHHHHHHHH
Confidence 358988876432211 0 11366677776665 22221 233333 22 2221 1367899999
Q ss_pred HHcCCCEEEEeecCC-------------ccccCCC-----CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCc
Q 021156 223 LASYADEFLVHGVDV-------------EGKKLGI-----DDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGR 282 (316)
Q Consensus 223 ~~~Ga~~ilvtdi~~-------------dG~~~G~-----d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~ 282 (316)
++.|++.+.++.... .|.++|+ .++.++++++.+ ++|||++|||.+.+|+.+++..| +
T Consensus 235 ~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aG--A 312 (344)
T PRK05286 235 LEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAG--A 312 (344)
T ss_pred HHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcC--C
Confidence 999999998876431 2334553 577888998877 79999999999999999999987 9
Q ss_pred CEEEEccchhhccCcccHHHHHHHHHh
Q 021156 283 VDVTVGSALDIFGGNLAYKDVVAWHAQ 309 (316)
Q Consensus 283 ~gVivG~Al~~~~g~~~~~~~~~~~~~ 309 (316)
+.|.|||++ .++|++.++++.+.+.+
T Consensus 313 d~V~v~~~~-~~~gP~~~~~i~~~L~~ 338 (344)
T PRK05286 313 SLVQIYSGL-IYEGPGLVKEIVRGLAR 338 (344)
T ss_pred CHHHHHHHH-HHhCchHHHHHHHHHHH
Confidence 999999998 23479888888765544
No 109
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=98.53 E-value=3.2e-06 Score=80.55 Aligned_cols=168 Identities=17% Similarity=0.129 Sum_probs=105.0
Q ss_pred HHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEEecCCCH---HHHHHHHHcC--CCEEEeCCeeecCCCCC
Q 021156 97 EFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGINS---DNSLSYIEEG--ATHVIVTSYVFNNGQMD 171 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~vGGGIr~---e~~~~~l~~G--ad~VVigt~~~~~~~~~ 171 (316)
++|+..++.|...+..= ++ ........+.++...+++-++=|++. +.+..+.++| +|.|+++++-=.+ +.-
T Consensus 49 ~LA~~a~~~G~~~i~hK-~~--~E~~~sfvrk~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s-~~~ 124 (321)
T TIGR01306 49 KLAEQLAENGYFYIMHR-FD--EESRIPFIKDMQERGLFASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHS-NSV 124 (321)
T ss_pred HHHHHHHHcCCEEEEec-CC--HHHHHHHHHhccccccEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCch-HHH
Confidence 57777777763322111 11 11111112222222345556666663 4588889999 7999999854322 111
Q ss_pred HHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEee------cCCccccCCC-
Q 021156 172 LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHG------VDVEGKKLGI- 244 (316)
Q Consensus 172 ~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd------i~~dG~~~G~- 244 (316)
.+.++++.+.++ ...++. ++ +...+.++.+.+.|++.+.+.- .++.-+..|.
T Consensus 125 ~~~i~~i~~~~p-~~~vi~------Gn--------------V~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~ 183 (321)
T TIGR01306 125 INMIKHIKTHLP-DSFVIA------GN--------------VGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTG 183 (321)
T ss_pred HHHHHHHHHhCC-CCEEEE------ec--------------CCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCC
Confidence 466777777773 221111 11 1235789999999999986541 1222222233
Q ss_pred CH--HHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 245 DD--ELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 245 d~--eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
+| ..+.++++.+++|||+.|||++-.|+.+++.+| ++.|++|+.+
T Consensus 184 ~~~l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~G--Ad~Vmig~~~ 230 (321)
T TIGR01306 184 GWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIRFG--ASMVMIGSLF 230 (321)
T ss_pred chHHHHHHHHHHhcCCeEEEECCcCcHHHHHHHHHcC--CCEEeechhh
Confidence 34 478888888899999999999999999999998 9999999887
No 110
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=98.50 E-value=1.7e-06 Score=83.45 Aligned_cols=88 Identities=20% Similarity=0.043 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHcC-CCEEEEeecCCc------------cccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCC
Q 021156 214 YLDERVLDFLASY-ADEFLVHGVDVE------------GKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGI 280 (316)
Q Consensus 214 ~~~e~a~~~~~~G-a~~ilvtdi~~d------------G~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~ 280 (316)
+..++++.+++.| ++.+-++.-... ....+++++..+.+++.+++||+++||+.+++++.++++.|
T Consensus 229 e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~- 307 (343)
T cd04734 229 EALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAG- 307 (343)
T ss_pred HHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcC-
Confidence 4568899999998 898766432111 11234578899999988999999999999999999999987
Q ss_pred CcCEEEEccchhhccCcccHHHHH
Q 021156 281 GRVDVTVGSALDIFGGNLAYKDVV 304 (316)
Q Consensus 281 g~~gVivG~Al~~~~g~~~~~~~~ 304 (316)
+++.|++||++ ..+|+.++.+.
T Consensus 308 ~~D~V~~gR~~--ladP~l~~k~~ 329 (343)
T cd04734 308 HADMVGMTRAH--IADPHLVAKAR 329 (343)
T ss_pred CCCeeeecHHh--HhCccHHHHHH
Confidence 59999999999 99998776664
No 111
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=98.47 E-value=2.7e-06 Score=80.45 Aligned_cols=133 Identities=17% Similarity=0.053 Sum_probs=91.6
Q ss_pred cEEEecCCC---H-HHHHHHHHcCCCEEEeCCeeecC-CCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcce
Q 021156 135 GLQVGGGIN---S-DNSLSYIEEGATHVIVTSYVFNN-GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQK 209 (316)
Q Consensus 135 pl~vGGGIr---~-e~~~~~l~~Gad~VVigt~~~~~-~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~ 209 (316)
-+|+-+... . +.++.+.+.|++.+.++.-.-.. ....++.++++.+.++ ..+-+| .+
T Consensus 119 ~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~-----~pvivK------~v------- 180 (299)
T cd02809 119 WFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWK-----GPLILK------GI------- 180 (299)
T ss_pred EEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcC-----CCEEEe------ec-------
Confidence 366655433 2 44667778899988874322211 1223678888887763 122222 01
Q ss_pred ecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEE
Q 021156 210 FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVT 286 (316)
Q Consensus 210 ~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVi 286 (316)
...+.++.+.+.|++.|.++....-....|+ +++.+.++++.+ ++|||++|||++..|+.+++.+| +++|+
T Consensus 181 ----~s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lG--Ad~V~ 254 (299)
T cd02809 181 ----LTPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALG--ADAVL 254 (299)
T ss_pred ----CCHHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcC--CCEEE
Confidence 1246789999999999988653211111344 889999998765 59999999999999999999998 99999
Q ss_pred Eccch
Q 021156 287 VGSAL 291 (316)
Q Consensus 287 vG~Al 291 (316)
+|+++
T Consensus 255 ig~~~ 259 (299)
T cd02809 255 IGRPF 259 (299)
T ss_pred EcHHH
Confidence 99988
No 112
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=98.47 E-value=1.2e-05 Score=71.08 Aligned_cols=177 Identities=18% Similarity=0.104 Sum_probs=105.5
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCC--cccHHHHHHHHHh--CCCcEEEecCCC-H--HHHHHHHHcCCCEEEeCCeeec
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGAD--PLSKAAAIEALHA--YPGGLQVGGGIN-S--DNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~--~~~~~~i~~~v~~--~~~pl~vGGGIr-~--e~~~~~l~~Gad~VVigt~~~~ 166 (316)
+..++++.+.+. +++ +-+... ...-...++.+++ .+.|+.+++=+. . ..++.+.++||+.+++-.+...
T Consensus 14 ~~~~~~~~l~~~-i~~---ieig~~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~~ 89 (202)
T cd04726 14 EALELAKKVPDG-VDI---IEAGTPLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAPL 89 (202)
T ss_pred HHHHHHHHhhhc-CCE---EEcCCHHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCCH
Confidence 445566666555 443 333211 1111334454543 367776665554 2 3478899999999998655421
Q ss_pred CCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc-CCCC
Q 021156 167 NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK-LGID 245 (316)
Q Consensus 167 ~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~-~G~d 245 (316)
+ ..+.+-+..+++| +.+.+++- +..++.+..+ +.+.|++.+.++..-..++. ....
T Consensus 90 ~---~~~~~i~~~~~~g---~~~~v~~~----------------~~~t~~e~~~-~~~~~~d~v~~~~~~~~~~~~~~~~ 146 (202)
T cd04726 90 S---TIKKAVKAAKKYG---KEVQVDLI----------------GVEDPEKRAK-LLKLGVDIVILHRGIDAQAAGGWWP 146 (202)
T ss_pred H---HHHHHHHHHHHcC---CeEEEEEe----------------CCCCHHHHHH-HHHCCCCEEEEcCcccccccCCCCC
Confidence 1 0232333334454 22333321 0113445554 77889998877432222333 2336
Q ss_pred HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHH
Q 021156 246 DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDV 303 (316)
Q Consensus 246 ~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~ 303 (316)
.+.++++.+..++|+.+.|||+ .+++.++++.| ++++++|+++ +.. -++++.
T Consensus 147 ~~~i~~~~~~~~~~i~~~GGI~-~~~i~~~~~~G--ad~vvvGsai--~~~-~d~~~~ 198 (202)
T cd04726 147 EDDLKKVKKLLGVKVAVAGGIT-PDTLPEFKKAG--ADIVIVGRAI--TGA-ADPAEA 198 (202)
T ss_pred HHHHHHHHhhcCCCEEEECCcC-HHHHHHHHhcC--CCEEEEeehh--cCC-CCHHHH
Confidence 7888888876789999999996 99999999998 9999999999 643 244443
No 113
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.45 E-value=1.7e-06 Score=78.87 Aligned_cols=75 Identities=15% Similarity=0.156 Sum_probs=65.0
Q ss_pred HHHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhc
Q 021156 216 DERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIF 294 (316)
Q Consensus 216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~ 294 (316)
...++++.+.|++.+--+. +.-|+..|. |.++++.+++..++|||+.|||++++|+.+++++| +++|++|+|+ .
T Consensus 134 ~~~ar~l~~~G~~~vmPlg-~pIGsg~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelG--AdgVlV~SAI--t 208 (248)
T cd04728 134 PVLAKRLEDAGCAAVMPLG-SPIGSGQGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELG--ADAVLLNTAI--A 208 (248)
T ss_pred HHHHHHHHHcCCCEeCCCC-cCCCCCCCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcC--CCEEEEChHh--c
Confidence 4789999999999773211 445677888 99999999988899999999999999999999999 9999999999 6
Q ss_pred c
Q 021156 295 G 295 (316)
Q Consensus 295 ~ 295 (316)
.
T Consensus 209 ~ 209 (248)
T cd04728 209 K 209 (248)
T ss_pred C
Confidence 4
No 114
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=98.45 E-value=2e-05 Score=71.93 Aligned_cols=65 Identities=20% Similarity=0.286 Sum_probs=55.9
Q ss_pred EEEEeecCCccccCCCCHHHHHHHhhcCCC-cEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcc
Q 021156 229 EFLVHGVDVEGKKLGIDDELVALLGKYSPI-PVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNL 298 (316)
Q Consensus 229 ~ilvtdi~~dG~~~G~d~eli~~l~~~~~i-PVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~ 298 (316)
.++|+.... ++..++|.+.++++++.++. |++++|||++.+++++++..| +++|+||+++ ++++-
T Consensus 156 ~~vYle~gs-~~g~~~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~G--AD~VVVGSai--~~d~~ 221 (232)
T PRK04169 156 PIVYLEYGG-GAGDPVPPEMVKAVKKALDITPLIYGGGIRSPEQARELMAAG--ADTIVVGNII--EEDPK 221 (232)
T ss_pred CeEEEECCC-CCCCCCCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhC--CCEEEEChHH--hhCHH
Confidence 356677543 56677799999999998888 999999999999999999998 9999999999 87643
No 115
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.44 E-value=1.4e-05 Score=73.35 Aligned_cols=171 Identities=17% Similarity=0.186 Sum_probs=107.4
Q ss_pred CHHHHHHHHHHcCCCcceEE------EecCCc-c--------------cHHHHHHHHH-hCCCcEEEecCCCH------H
Q 021156 94 SAAEFANLYKEDGLTGGHAI------MLGADP-L--------------SKAAAIEALH-AYPGGLQVGGGINS------D 145 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lv------DLda~~-~--------------~~~~i~~~v~-~~~~pl~vGGGIr~------e 145 (316)
.-.+.++.+.++|++.+|+= -.|+.. . .-..+++.++ ...+|+.+=.=.+. +
T Consensus 15 ~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~ 94 (242)
T cd04724 15 TTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQYGLE 94 (242)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHhCHH
Confidence 34578888989999988875 444421 1 1123444444 35678654322232 3
Q ss_pred H-HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH
Q 021156 146 N-SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA 224 (316)
Q Consensus 146 ~-~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~ 224 (316)
+ ++.+.++|++.+++--...+. .+.+.+..+++|-+. ++.+.- ..+.+.++.+.+
T Consensus 95 ~fi~~~~~aG~~giiipDl~~ee----~~~~~~~~~~~g~~~-i~~i~P-------------------~T~~~~i~~i~~ 150 (242)
T cd04724 95 RFLRDAKEAGVDGLIIPDLPPEE----AEEFREAAKEYGLDL-IFLVAP-------------------TTPDERIKKIAE 150 (242)
T ss_pred HHHHHHHHCCCcEEEECCCCHHH----HHHHHHHHHHcCCcE-EEEeCC-------------------CCCHHHHHHHHh
Confidence 3 778888999999885443332 333444445555222 222211 123466677777
Q ss_pred cCCCEEEEeecC-CccccCCC--C-HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 225 SYADEFLVHGVD-VEGKKLGI--D-DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 225 ~Ga~~ilvtdi~-~dG~~~G~--d-~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
...+.+++..+. ..|...+. + .+.++++++..++|+.++|||++.+++.++.+. +++++||+++
T Consensus 151 ~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~---ADgvVvGSai 218 (242)
T cd04724 151 LASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVAKY---ADGVIVGSAL 218 (242)
T ss_pred hCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHHcc---CCEEEECHHH
Confidence 667766655542 12222322 2 367888888889999999999999999999986 5999999999
No 116
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.44 E-value=1.5e-06 Score=87.17 Aligned_cols=174 Identities=18% Similarity=0.140 Sum_probs=115.4
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCC---cccHHHHHHHHHhC-----CCcEEEecCC--C--H-HHHHHHHHcCCCEEEe
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGAD---PLSKAAAIEALHAY-----PGGLQVGGGI--N--S-DNSLSYIEEGATHVIV 160 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~---~~~~~~i~~~v~~~-----~~pl~vGGGI--r--~-e~~~~~l~~Gad~VVi 160 (316)
+..++...+.+.+...+-++|=++. -.....+.+....- ...+.||.=+ + . +.++.+.++|++.|++
T Consensus 166 sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~~~~g~l~V~aav~~~~~~~~~a~~Lv~aGvd~i~~ 245 (479)
T PRK07807 166 DPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAVDAAGRLRVAAAVGINGDVAAKARALLEAGVDVLVV 245 (479)
T ss_pred cHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchhhhhhccchHhhhccChhHHHHHHHHHHhCCCEEEE
Confidence 4456666777777887777764332 01222232222110 1134455444 2 2 5588999999999999
Q ss_pred CCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEE--ee----
Q 021156 161 TSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLV--HG---- 234 (316)
Q Consensus 161 gt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilv--td---- 234 (316)
+++-..+ +.-.++++++.++|+ +..++.=|+ ...+-++.+.+.|++.+-+ -.
T Consensus 246 D~a~~~~-~~~~~~i~~ik~~~p-~~~v~agnv--------------------~t~~~a~~l~~aGad~v~vgig~gsic 303 (479)
T PRK07807 246 DTAHGHQ-EKMLEALRAVRALDP-GVPIVAGNV--------------------VTAEGTRDLVEAGADIVKVGVGPGAMC 303 (479)
T ss_pred eccCCcc-HHHHHHHHHHHHHCC-CCeEEeecc--------------------CCHHHHHHHHHcCCCEEEECccCCccc
Confidence 9886653 323678899998884 433333343 2357889999999998741 01
Q ss_pred cCCccccCC-CCHHHHHHHhh---cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 235 VDVEGKKLG-IDDELVALLGK---YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 235 i~~dG~~~G-~d~eli~~l~~---~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
.++.=+.-| |++.++.++++ ..++|||+.|||.+..|+.+++.+| +++||+|+++
T Consensus 304 tt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~g--a~~v~~g~~~ 362 (479)
T PRK07807 304 TTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAG--ASNVMIGSWF 362 (479)
T ss_pred ccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcC--CCeeeccHhh
Confidence 122212222 68999998876 4689999999999999999999998 9999999988
No 117
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=98.42 E-value=5.7e-06 Score=79.42 Aligned_cols=147 Identities=16% Similarity=0.068 Sum_probs=100.0
Q ss_pred HHHHHHHcCCCEEEeCCe--------------eecC---------CCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEE
Q 021156 146 NSLSYIEEGATHVIVTSY--------------VFNN---------GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAI 202 (316)
Q Consensus 146 ~~~~~l~~Gad~VVigt~--------------~~~~---------~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v 202 (316)
.++++.++|+|.|=|... .+.| .++..+.++.+.+.+|++ +.+.+++...+ .
T Consensus 159 aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d-~~v~vri~~~~----~ 233 (336)
T cd02932 159 AARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPED-KPLFVRISATD----W 233 (336)
T ss_pred HHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCC-ceEEEEEcccc----c
Confidence 466777899999977642 1111 112257888888888744 45666653100 1
Q ss_pred EeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccc----c-CCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHH
Q 021156 203 VTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGK----K-LGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKV 277 (316)
Q Consensus 203 ~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~----~-~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~ 277 (316)
.-.||.. .+..++++.+++.|++.+-++.-..... . .+.+++..+++++.+++||+++|++.++++++++++
T Consensus 234 ~~~g~~~---~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~ 310 (336)
T cd02932 234 VEGGWDL---EDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAILE 310 (336)
T ss_pred CCCCCCH---HHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHH
Confidence 1124432 2456888899999998775542111111 1 334678889999989999999999999999999999
Q ss_pred hCCCcCEEEEccchhhccCcccHHHH
Q 021156 278 AGIGRVDVTVGSALDIFGGNLAYKDV 303 (316)
Q Consensus 278 ~G~g~~gVivG~Al~~~~g~~~~~~~ 303 (316)
.| .++.|.+||++ +.+|.....+
T Consensus 311 ~g-~aD~V~~gR~~--i~dP~~~~k~ 333 (336)
T cd02932 311 SG-RADLVALGREL--LRNPYWPLHA 333 (336)
T ss_pred cC-CCCeehhhHHH--HhCccHHHHH
Confidence 98 58999999999 9888655443
No 118
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=98.41 E-value=1.3e-05 Score=73.64 Aligned_cols=173 Identities=19% Similarity=0.156 Sum_probs=118.9
Q ss_pred ccCHHHHHHHHHHcCCCcceEEEecCC-cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156 92 DKSAAEFANLYKEDGLTGGHAIMLGAD-PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQ 169 (316)
Q Consensus 92 ~~~p~e~a~~~~~~G~~~l~lvDLda~-~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~ 169 (316)
+-||.++|+.|++.|+..+-+.-=..- ..+.+.+..+...+.+|+-.===|- ..++..+..+|||.|.+=...+.+
T Consensus 65 d~dp~~ia~~Ye~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L~~-- 142 (254)
T COG0134 65 DFDPVEIAKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDD-- 142 (254)
T ss_pred cCCHHHHHHHHHHhCCeEEEEecCccccCCCHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHHHHHHhcCH--
Confidence 458999999999999876554321111 1334444444456888875544343 578999999999987765555553
Q ss_pred CCHHHHHHHH---HHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCH
Q 021156 170 MDLERLKDLV---RVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDD 246 (316)
Q Consensus 170 ~~~eli~ei~---~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~ 246 (316)
+.++++. +.+| +|+- |-++ -.+.++++.+.|++-|-++.++.... -.|+
T Consensus 143 ---~~l~el~~~A~~LG-------m~~L-------VEVh---------~~eEl~rAl~~ga~iIGINnRdL~tf--~vdl 194 (254)
T COG0134 143 ---EQLEELVDRAHELG-------MEVL-------VEVH---------NEEELERALKLGAKIIGINNRDLTTL--EVDL 194 (254)
T ss_pred ---HHHHHHHHHHHHcC-------CeeE-------EEEC---------CHHHHHHHHhCCCCEEEEeCCCcchh--eecH
Confidence 4344444 4444 3432 2222 23456666779999888888776422 3477
Q ss_pred HHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcc
Q 021156 247 ELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNL 298 (316)
Q Consensus 247 eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~ 298 (316)
+...+++... +.-+|...||.+++|+.++.+.| ++++.||+++ +..+=
T Consensus 195 ~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~g--a~a~LVG~sl--M~~~~ 244 (254)
T COG0134 195 ETTEKLAPLIPKDVILISESGISTPEDVRRLAKAG--ADAFLVGEAL--MRADD 244 (254)
T ss_pred HHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHHcC--CCEEEecHHH--hcCCC
Confidence 7788887654 36789999999999999999998 9999999999 87653
No 119
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=98.41 E-value=2.8e-06 Score=81.73 Aligned_cols=92 Identities=13% Similarity=-0.036 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHcCCCEEEEeecCC----ccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEcc
Q 021156 214 YLDERVLDFLASYADEFLVHGVDV----EGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGS 289 (316)
Q Consensus 214 ~~~e~a~~~~~~Ga~~ilvtdi~~----dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~ 289 (316)
+..++++.+++.|++.+-++.-.. .....|+++++.+++++.+++||+++|++.+++++.++++.| ++|.|.+||
T Consensus 228 e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g-~~D~V~~gR 306 (337)
T PRK13523 228 DYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNN-RADLIFIGR 306 (337)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcC-CCChHHhhH
Confidence 456788999999999887765431 122457789999999999999999999999999999999988 599999999
Q ss_pred chhhccCcccHHHHHHHHH
Q 021156 290 ALDIFGGNLAYKDVVAWHA 308 (316)
Q Consensus 290 Al~~~~g~~~~~~~~~~~~ 308 (316)
++ ..+|..++.+.+.+.
T Consensus 307 ~~--iadP~~~~k~~~~~~ 323 (337)
T PRK13523 307 EL--LRNPYFPRIAAKELG 323 (337)
T ss_pred HH--HhCccHHHHHHHHcC
Confidence 99 999988888766443
No 120
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=98.41 E-value=5.3e-06 Score=79.87 Aligned_cols=149 Identities=15% Similarity=0.089 Sum_probs=99.6
Q ss_pred HHHHHHHcCCCEEEeCCee----------ecC-------C------CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEE
Q 021156 146 NSLSYIEEGATHVIVTSYV----------FNN-------G------QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAI 202 (316)
Q Consensus 146 ~~~~~l~~Gad~VVigt~~----------~~~-------~------~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v 202 (316)
.++++.++|+|.|=|...- ..| | ++..+.++.+.+..|.+. +. +|.....+ +
T Consensus 157 aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~--v~--vRis~~~~-~ 231 (338)
T cd02933 157 AARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADR--VG--IRLSPFGT-F 231 (338)
T ss_pred HHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCc--eE--EEECcccc-C
Confidence 3556678999999885432 111 1 234477777777777552 22 23211100 0
Q ss_pred EeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCc
Q 021156 203 VTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGR 282 (316)
Q Consensus 203 ~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~ 282 (316)
....|. .+.-+..++++.+.+.|++.+-++.-.......+++++..+.+++.+++||+++||+. ++++.++++.| ++
T Consensus 232 ~~~~~~-~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~-~~~a~~~l~~g-~~ 308 (338)
T cd02933 232 NDMGDS-DPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGGYD-AESAEAALADG-KA 308 (338)
T ss_pred CCCCCC-CCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEEECCCC-HHHHHHHHHcC-CC
Confidence 000011 1112356788999999999876622212222367899999999999999999999997 99999999987 59
Q ss_pred CEEEEccchhhccCcccHHHHH
Q 021156 283 VDVTVGSALDIFGGNLAYKDVV 304 (316)
Q Consensus 283 ~gVivG~Al~~~~g~~~~~~~~ 304 (316)
+.|.+||++ ..+|..++++.
T Consensus 309 D~V~~gR~~--ladP~~~~k~~ 328 (338)
T cd02933 309 DLVAFGRPF--IANPDLVERLK 328 (338)
T ss_pred CEEEeCHhh--hhCcCHHHHHh
Confidence 999999999 99997776653
No 121
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=98.41 E-value=2.7e-05 Score=77.29 Aligned_cols=180 Identities=20% Similarity=0.128 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCC-cccHHHHHHHHHhCCCcEEEec----CCCHHHHHHHHHcCCCEEEe-CCeeecC
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGAD-PLSKAAAIEALHAYPGGLQVGG----GINSDNSLSYIEEGATHVIV-TSYVFNN 167 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~-~~~~~~i~~~v~~~~~pl~vGG----GIr~e~~~~~l~~Gad~VVi-gt~~~~~ 167 (316)
+-+++++...+.|++.+|+ ..... ......+.++.+..+.+.++.= ++-..+++.+.++||+.|.+ +......
T Consensus 17 ~~~~~~~~~~~~Gv~~ie~-g~p~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~g~~~v~~a~~aGAdgV~v~g~~~~~~ 95 (430)
T PRK07028 17 RAVEIAKEAVAGGADWIEA-GTPLIKSEGMNAIRTLRKNFPDHTIVADMKTMDTGAIEVEMAAKAGADIVCILGLADDST 95 (430)
T ss_pred HHHHHHHHHHhcCCcEEEe-CCHHHHHhhHHHHHHHHHHCCCCEEEEEeeeccchHHHHHHHHHcCCCEEEEecCCChHH
Confidence 3445666655678888875 11110 0112233333344444444311 11135899999999999886 5422111
Q ss_pred CCCCHHHHHHHHHHhcCceEEEe-eeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC-C
Q 021156 168 GQMDLERLKDLVRVVGKQRLVLD-LSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI-D 245 (316)
Q Consensus 168 ~~~~~eli~ei~~~~G~~~Ivvs-lD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d 245 (316)
+..+.+..+++|. .+++. +.. .+..+.++.+.+.|++.+.++.-- ++...++ .
T Consensus 96 ----~~~~i~~a~~~G~-~~~~g~~s~-------------------~t~~e~~~~a~~~GaD~I~~~pg~-~~~~~~~~~ 150 (430)
T PRK07028 96 ----IEDAVRAARKYGV-RLMADLINV-------------------PDPVKRAVELEELGVDYINVHVGI-DQQMLGKDP 150 (430)
T ss_pred ----HHHHHHHHHHcCC-EEEEEecCC-------------------CCHHHHHHHHHhcCCCEEEEEecc-chhhcCCCh
Confidence 2223333344653 22221 111 124566788889999998765422 1222233 4
Q ss_pred HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156 246 DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA 305 (316)
Q Consensus 246 ~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~ 305 (316)
++.++++++..++|+.+.||| +.+.+.++++.| ++++++|+++ +... ++++..+
T Consensus 151 ~~~l~~l~~~~~iPI~a~GGI-~~~n~~~~l~aG--Adgv~vGsaI--~~~~-d~~~~~~ 204 (430)
T PRK07028 151 LELLKEVSEEVSIPIAVAGGL-DAETAAKAVAAG--ADIVIVGGNI--IKSA-DVTEAAR 204 (430)
T ss_pred HHHHHHHHhhCCCcEEEECCC-CHHHHHHHHHcC--CCEEEEChHH--cCCC-CHHHHHH
Confidence 678999988788999999999 679999999998 9999999999 6543 4444443
No 122
>PLN02334 ribulose-phosphate 3-epimerase
Probab=98.40 E-value=7.7e-05 Score=67.79 Aligned_cols=181 Identities=20% Similarity=0.192 Sum_probs=108.4
Q ss_pred HHHHHHHHHHcCCCcceEEEecCCc-ccHH---HHHHHHHh-CCCcEEEecCCC-H-HHHHHHHHcCCCEEEeCCe-eec
Q 021156 95 AAEFANLYKEDGLTGGHAIMLGADP-LSKA---AAIEALHA-YPGGLQVGGGIN-S-DNSLSYIEEGATHVIVTSY-VFN 166 (316)
Q Consensus 95 p~e~a~~~~~~G~~~l~lvDLda~~-~~~~---~i~~~v~~-~~~pl~vGGGIr-~-e~~~~~l~~Gad~VVigt~-~~~ 166 (316)
..+.++...+.|++++|+=..|+.. ++.. .+.+.+++ ...|+.+-==+. . +.++.++++||+.|.+--. ...
T Consensus 22 l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~v~vH~~q~~~ 101 (229)
T PLN02334 22 LAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTFHIEQAST 101 (229)
T ss_pred HHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCEEEEeeccccc
Confidence 4456666777899999995556532 2211 34444543 333332222222 3 4588889999999944333 111
Q ss_pred CCCCCH-HHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcC-CCEEEEeecCCccccCCC
Q 021156 167 NGQMDL-ERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASY-ADEFLVHGVDVEGKKLGI 244 (316)
Q Consensus 167 ~~~~~~-eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~G-a~~ilvtdi~~dG~~~G~ 244 (316)
+ .+ +.++++. ..| ..+.+.+. .. ++.+.++.+.+.| ++.+++..+....+.+..
T Consensus 102 d---~~~~~~~~i~-~~g---~~iGls~~--~~---------------t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~ 157 (229)
T PLN02334 102 I---HLHRLIQQIK-SAG---MKAGVVLN--PG---------------TPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSF 157 (229)
T ss_pred h---hHHHHHHHHH-HCC---CeEEEEEC--CC---------------CCHHHHHHHHhccCCCEEEEEEEecCCCcccc
Confidence 1 13 3333332 233 23455442 10 2456677776764 999887666542222222
Q ss_pred ---CHHHHHHHhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156 245 ---DDELVALLGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA 305 (316)
Q Consensus 245 ---d~eli~~l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~ 305 (316)
.++.++++++. .++|+.+-||| +.+++..+.+.| ++++++|+++ +... ++++..+
T Consensus 158 ~~~~~~~i~~~~~~~~~~~I~a~GGI-~~e~i~~l~~aG--ad~vvvgsai--~~~~-d~~~~~~ 216 (229)
T PLN02334 158 IPSMMDKVRALRKKYPELDIEVDGGV-GPSTIDKAAEAG--ANVIVAGSAV--FGAP-DYAEVIS 216 (229)
T ss_pred CHHHHHHHHHHHHhCCCCcEEEeCCC-CHHHHHHHHHcC--CCEEEEChHH--hCCC-CHHHHHH
Confidence 34567777665 46899999999 689999999998 9999999999 7533 4444433
No 123
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=98.40 E-value=5.8e-05 Score=67.64 Aligned_cols=178 Identities=19% Similarity=0.204 Sum_probs=100.1
Q ss_pred HHHHHHHHHHcCCCcceEEEecCCc-cc---HHHHHHHHHh-CCCcEEEecCC--C-H-HHHHHHHHcCCCEEEeCCeee
Q 021156 95 AAEFANLYKEDGLTGGHAIMLGADP-LS---KAAAIEALHA-YPGGLQVGGGI--N-S-DNSLSYIEEGATHVIVTSYVF 165 (316)
Q Consensus 95 p~e~a~~~~~~G~~~l~lvDLda~~-~~---~~~i~~~v~~-~~~pl~vGGGI--r-~-e~~~~~l~~Gad~VVigt~~~ 165 (316)
..+.++...+.|++.+|+=..|+.. ++ .....+.++. ++.| ++-.+ + . +.++.+.++|++.+.+--...
T Consensus 18 ~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~--~~v~l~v~d~~~~i~~~~~~g~d~v~vh~~~~ 95 (220)
T PRK05581 18 LGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLP--LDVHLMVENPDRYVPDFAKAGADIITFHVEAS 95 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCc--EEEEeeeCCHHHHHHHHHHcCCCEEEEeeccc
Confidence 3356777778899999995555532 12 2333344432 3322 22223 2 3 457778899999966643322
Q ss_pred cCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCC
Q 021156 166 NNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGID 245 (316)
Q Consensus 166 ~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d 245 (316)
.. +....+..+.+| -++.+++... +..+.++.+. .+++.+++-.+...++.+..+
T Consensus 96 ~~----~~~~~~~~~~~~-~~~g~~~~~~-------------------t~~e~~~~~~-~~~d~i~~~~~~~g~tg~~~~ 150 (220)
T PRK05581 96 EH----IHRLLQLIKSAG-IKAGLVLNPA-------------------TPLEPLEDVL-DLLDLVLLMSVNPGFGGQKFI 150 (220)
T ss_pred hh----HHHHHHHHHHcC-CEEEEEECCC-------------------CCHHHHHHHH-hhCCEEEEEEECCCCCccccc
Confidence 22 222223333443 2333333211 1235555543 347877665554444444446
Q ss_pred HHHHHHH---hhcCC-----CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156 246 DELVALL---GKYSP-----IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA 305 (316)
Q Consensus 246 ~eli~~l---~~~~~-----iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~ 305 (316)
++.++.+ ++..+ .++.+.|||+. +++.++.+.| ++++++||++ +..+ ++++..+
T Consensus 151 ~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~~G--aD~vvvgSai--~~~~-d~~~~~~ 212 (220)
T PRK05581 151 PEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAEAG--ADVFVAGSAV--FGAP-DYKEAID 212 (220)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHcC--CCEEEEChhh--hCCC-CHHHHHH
Confidence 6554444 33322 34668899999 8999999988 9999999999 7433 4444444
No 124
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.39 E-value=2.5e-06 Score=77.87 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=64.7
Q ss_pred HHHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhc
Q 021156 216 DERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIF 294 (316)
Q Consensus 216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~ 294 (316)
...++++.+.|++.+--+. ..-|+..|. |.+.++.+.+..++|||+.|||++++|+.+++++| +++|++|+|+ .
T Consensus 134 ~~~ak~l~~~G~~~vmPlg-~pIGsg~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelG--AdgVlV~SAI--t 208 (250)
T PRK00208 134 PVLAKRLEEAGCAAVMPLG-APIGSGLGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELG--ADAVLLNTAI--A 208 (250)
T ss_pred HHHHHHHHHcCCCEeCCCC-cCCCCCCCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcC--CCEEEEChHh--h
Confidence 4789999999999772211 345677788 99999999988899999999999999999999999 9999999999 6
Q ss_pred c
Q 021156 295 G 295 (316)
Q Consensus 295 ~ 295 (316)
.
T Consensus 209 k 209 (250)
T PRK00208 209 V 209 (250)
T ss_pred C
Confidence 4
No 125
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=98.39 E-value=1.5e-06 Score=85.11 Aligned_cols=155 Identities=13% Similarity=0.153 Sum_probs=109.4
Q ss_pred CcEEEecCCC-H-HHHHHHHHcCC--CEEEe--------------CCeeecCCCCCHHHHHHHHHHhc--CceEEEeeee
Q 021156 134 GGLQVGGGIN-S-DNSLSYIEEGA--THVIV--------------TSYVFNNGQMDLERLKDLVRVVG--KQRLVLDLSC 193 (316)
Q Consensus 134 ~pl~vGGGIr-~-e~~~~~l~~Ga--d~VVi--------------gt~~~~~~~~~~eli~ei~~~~G--~~~IvvslD~ 193 (316)
.-+|+.||-- . ..+.+++..-| |.|=| ||++.++ |..+.++++..- ++.| .+.+
T Consensus 322 FGVQlag~~pdt~~kaaq~i~e~~~VDFIDlN~GCPIDlvy~qG~GsALl~r----p~rl~~~l~~m~~vs~~i--PiTV 395 (614)
T KOG2333|consen 322 FGVQLAGSKPDTAAKAAQVIAETCDVDFIDLNMGCPIDLVYRQGGGSALLNR----PARLIRILRAMNAVSGDI--PITV 395 (614)
T ss_pred eeeEeccCChHHHHHHHHHHHhhcceeeeeccCCCChheeeccCCcchhhcC----cHHHHHHHHHHHHhccCC--CeEE
Confidence 4688989884 3 44555543222 22221 5677776 777777776542 1222 4555
Q ss_pred eecCCeeEEEeCCcceecccCHHHHHHHHH-HcCCCEEEEeecCCccccCCC-CHHHHHHHhhc--CCCcEEEEeCCCCH
Q 021156 194 RKKDGKYAIVTDRWQKFSDVYLDERVLDFL-ASYADEFLVHGVDVEGKKLGI-DDELVALLGKY--SPIPVTYAGGVTTM 269 (316)
Q Consensus 194 k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~-~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~--~~iPVIasGGI~s~ 269 (316)
|++.| ..+.. .-..+++..+. +.|+..+.+|.++|...++-. ||+.+.++++. +.+|+|.+|+|-|.
T Consensus 396 KiRTG--------~keg~-~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l~liGNGDi~S~ 466 (614)
T KOG2333|consen 396 KIRTG--------TKEGH-PVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSALPLIGNGDILSW 466 (614)
T ss_pred EEecc--------cccCc-hhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCceeEecCccccH
Confidence 43322 22211 23456666666 888999999999999998766 99999999764 34899999999999
Q ss_pred HHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156 270 ADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA 305 (316)
Q Consensus 270 eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~ 305 (316)
+|..+-+..+-.+++||||+++ .-.||.|.|+.+
T Consensus 467 eDw~~~~~~~p~v~svMIaRGA--LIKPWIFtEIke 500 (614)
T KOG2333|consen 467 EDWYERLNQNPNVDSVMIARGA--LIKPWIFTEIKE 500 (614)
T ss_pred HHHHHHhhcCCCcceEEeeccc--cccchHhhhhhh
Confidence 9988877776349999999999 999999999975
No 126
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=98.39 E-value=5.2e-05 Score=66.82 Aligned_cols=163 Identities=20% Similarity=0.141 Sum_probs=107.8
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCcc----cHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADPL----SKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQ 169 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~~----~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~ 169 (316)
+..+..+...+.|++.+++-+-+.... ....+...++..+.|+.+-. +++-+.+.|++.|.++.....
T Consensus 14 ~~~~~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~~~~~~l~i~~-----~~~la~~~g~~GvHl~~~~~~--- 85 (196)
T TIGR00693 14 DLLNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRYGVPFIVND-----RVDLALALGADGVHLGQDDLP--- 85 (196)
T ss_pred cHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHHHhCCeEEEEC-----HHHHHHHcCCCEEecCcccCC---
Confidence 355666666677888777765543321 12233444455678888854 677788899999999754322
Q ss_pred CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc----CCCC
Q 021156 170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK----LGID 245 (316)
Q Consensus 170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~----~G~d 245 (316)
++.+++. .+ ....+++.+. +. +.+.++.+.|++.+.+..+-..++. ...+
T Consensus 86 --~~~~r~~---~~-~~~~ig~s~h-------------------~~-~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g 139 (196)
T TIGR00693 86 --ASEARAL---LG-PDKIIGVSTH-------------------NL-EELAEAEAEGADYIGFGPIFPTPTKKDPAPPAG 139 (196)
T ss_pred --HHHHHHh---cC-CCCEEEEeCC-------------------CH-HHHHHHhHcCCCEEEECCccCCCCCCCCCCCCC
Confidence 3333322 32 2234555552 23 3345677889999875444333332 2237
Q ss_pred HHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156 246 DELVALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG 295 (316)
Q Consensus 246 ~eli~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~ 295 (316)
++.++++.+.. ++||++.||| +.+++.++++.| +++|.+|+++ +.
T Consensus 140 ~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G--~~gva~~~~i--~~ 185 (196)
T TIGR00693 140 VELLREIAATSIDIPIVAIGGI-TLENAAEVLAAG--ADGVAVVSAI--MQ 185 (196)
T ss_pred HHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcC--CCEEEEhHHh--hC
Confidence 89999987654 5999999999 589999999998 9999999999 64
No 127
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=98.39 E-value=2.3e-05 Score=70.21 Aligned_cols=180 Identities=14% Similarity=0.012 Sum_probs=105.4
Q ss_pred HHHHHHHHHHcCCCcceEE-EecCCcccHHHHHHHHHh-CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCH
Q 021156 95 AAEFANLYKEDGLTGGHAI-MLGADPLSKAAAIEALHA-YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDL 172 (316)
Q Consensus 95 p~e~a~~~~~~G~~~l~lv-DLda~~~~~~~i~~~v~~-~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~ 172 (316)
-.++|+...+.|.+.+.+= -.+-...+...+.+.+++ +++|+++==|- .+.+. -+||.+.+=|..=.+ ||
T Consensus 13 ~~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvilfp~~-~~~i~----~~aD~~~~~sllns~---~~ 84 (205)
T TIGR01769 13 IEKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVILFPGN-VNGLS----RYADAVFFMSLLNSA---DT 84 (205)
T ss_pred HHHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEEECCC-ccccC----cCCCEEEEEEeecCC---Cc
Confidence 4456667788888855331 111112334445566665 77898864222 12211 347776554433211 36
Q ss_pred HHHHHHH-------HHhcCceEEEeeeeeecCCeeEEEeCCccee-cccC---HHHHHHHHHHcCCCEEEEeecCCcccc
Q 021156 173 ERLKDLV-------RVVGKQRLVLDLSCRKKDGKYAIVTDRWQKF-SDVY---LDERVLDFLASYADEFLVHGVDVEGKK 241 (316)
Q Consensus 173 eli~ei~-------~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~-~~~~---~~e~a~~~~~~Ga~~ilvtdi~~dG~~ 241 (316)
+++-... +++| ..++..--+-.+.|. .+..-+-.+. ...+ ..+.+...+..|++.+ |-.+.+|+.
T Consensus 85 ~~i~g~~~~~~~~~~~~~-~e~ip~gYiv~~~~~-~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i--~Le~~sGa~ 160 (205)
T TIGR01769 85 YFIVGAQILGAITILKLN-LEVIPMAYLIVGPGG-AVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWV--YLEAGSGAS 160 (205)
T ss_pred chhhhHHHHHHHHHHHcC-CcccceEEEEECCCC-ceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEE--EEEcCCCCC
Confidence 5543332 5665 333332222112221 2221111111 1122 3345566667788855 335567886
Q ss_pred CCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEc
Q 021156 242 LGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVG 288 (316)
Q Consensus 242 ~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG 288 (316)
...+.++++++++.+++|++++|||++.++++++.+.| +++|++|
T Consensus 161 ~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~G--AD~VVVG 205 (205)
T TIGR01769 161 YPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAG--ADAIVTG 205 (205)
T ss_pred CCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcC--CCEEEeC
Confidence 66799999999998999999999999999999999998 8999997
No 128
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.37 E-value=9.1e-05 Score=65.86 Aligned_cols=134 Identities=17% Similarity=0.071 Sum_probs=85.8
Q ss_pred HHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHc
Q 021156 146 NSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLAS 225 (316)
Q Consensus 146 ~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~ 225 (316)
+++.+.++|||.+++-...-.. .+..+.+..+++| -.+ .+++- + ..++.+.++.+.+.
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~~---~~~~~i~~~~~~g-~~~--~~~~~--~--------------~~t~~~~~~~~~~~ 125 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADDA---TIKGAVKAAKKHG-KEV--QVDLI--N--------------VKDKVKRAKELKEL 125 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCHH---HHHHHHHHHHHcC-CEE--EEEec--C--------------CCChHHHHHHHHHc
Confidence 6999999999999876553210 1233344445565 223 33321 0 01255777788888
Q ss_pred CCCEEEEeecCCccccCCCCHHHHHHHhhcCC-CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156 226 YADEFLVHGVDVEGKKLGIDDELVALLGKYSP-IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV 304 (316)
Q Consensus 226 Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~-iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~ 304 (316)
|++.+.++.-....+..+..++.++++.+..+ .++.+.||| +.+.+.++++.| ++++++|+++ |..+ ++++..
T Consensus 126 g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI-~~~n~~~~~~~G--a~~v~vGsai--~~~~-d~~~~~ 199 (206)
T TIGR03128 126 GADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEARVAVAGGI-NLDTIPDVIKLG--PDIVIVGGAI--TKAA-DPAEAA 199 (206)
T ss_pred CCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCCcEEEECCc-CHHHHHHHHHcC--CCEEEEeehh--cCCC-CHHHHH
Confidence 99987665322222333346777888876544 455569999 889999999998 9999999999 7543 355554
Q ss_pred HHH
Q 021156 305 AWH 307 (316)
Q Consensus 305 ~~~ 307 (316)
+.+
T Consensus 200 ~~l 202 (206)
T TIGR03128 200 RQI 202 (206)
T ss_pred HHH
Confidence 433
No 129
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=98.37 E-value=0.00018 Score=66.48 Aligned_cols=196 Identities=19% Similarity=0.172 Sum_probs=127.2
Q ss_pred HHHHHHHHHHcCCCcceEEEecCCc---ccH----HHHHHH---HH-hCCCcEEEecCC-C-H--HHHHHHHHcCCCEEE
Q 021156 95 AAEFANLYKEDGLTGGHAIMLGADP---LSK----AAAIEA---LH-AYPGGLQVGGGI-N-S--DNSLSYIEEGATHVI 159 (316)
Q Consensus 95 p~e~a~~~~~~G~~~l~lvDLda~~---~~~----~~i~~~---v~-~~~~pl~vGGGI-r-~--e~~~~~l~~Gad~VV 159 (316)
..+=|+.|.+.|+|++.+-+....+ ... ..|-.+ ++ .+.+| +|=-+ + . +.+.-+...||+.|=
T Consensus 31 A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~~~p--~GVnvL~nd~~aalaiA~A~ga~FIR 108 (254)
T PF03437_consen 31 AVREAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREVSVP--VGVNVLRNDPKAALAIAAATGADFIR 108 (254)
T ss_pred HHHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhCCCC--EEeeeecCCCHHHHHHHHHhCCCEEE
Confidence 3456677888999999999876431 111 222222 22 35555 44344 2 2 345556678999876
Q ss_pred eCCeeec----CCCC--CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH-HHcCCCEEEE
Q 021156 160 VTSYVFN----NGQM--DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF-LASYADEFLV 232 (316)
Q Consensus 160 igt~~~~----~~~~--~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~-~~~Ga~~ilv 232 (316)
++..... .|-+ +...+-+..+..|.+ |.+--|++.+++. +. ...++.+.++.. ...++|.+++
T Consensus 109 v~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~-v~ilaDV~~kh~~-------~l--~~~~~~~~~~~a~~~~~aDaviV 178 (254)
T PF03437_consen 109 VNVFVGAYVTDEGIIEGCAGELLRYRKRLGAD-VKILADVHVKHSS-------PL--ATRDLEEAAKDAVERGGADAVIV 178 (254)
T ss_pred ecCEEceecccCccccccHHHHHHHHHHcCCC-eEEEeeechhhcc-------cC--CCCCHHHHHHHHHHhcCCCEEEE
Confidence 5543322 1322 234555666777776 7777787633331 11 123466677666 5677999998
Q ss_pred eecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchh---hccCcccHHHHHHHHHh
Q 021156 233 HGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALD---IFGGNLAYKDVVAWHAQ 309 (316)
Q Consensus 233 tdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~---~~~g~~~~~~~~~~~~~ 309 (316)
|.-. |...+|.+.++++++.+++||++++|+.. +.+.+++.. ++|+|||+.+= ...|+++.+.+.++.+.
T Consensus 179 tG~~---TG~~~~~~~l~~vr~~~~~PVlvGSGvt~-~Ni~~~l~~---ADG~IVGS~~K~~G~~~n~VD~~Rv~~fm~~ 251 (254)
T PF03437_consen 179 TGKA---TGEPPDPEKLKRVREAVPVPVLVGSGVTP-ENIAEYLSY---ADGAIVGSYFKKDGKWENPVDPERVRRFMEA 251 (254)
T ss_pred CCcc---cCCCCCHHHHHHHHhcCCCCEEEecCCCH-HHHHHHHHh---CCEEEEeeeeeeCCEeCCcCCHHHHHHHHHH
Confidence 7653 44667999999999988899999999765 778888876 69999999871 12346888888887764
No 130
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=98.35 E-value=2e-05 Score=75.39 Aligned_cols=176 Identities=16% Similarity=0.100 Sum_probs=115.5
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCC-cccHHHHHHHHHh-CCCcEEEecCC-CHHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGAD-PLSKAAAIEALHA-YPGGLQVGGGI-NSDNSLSYIEEGATHVIVTSYVFNNGQ 169 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~-~~~~~~i~~~v~~-~~~pl~vGGGI-r~e~~~~~l~~Gad~VVigt~~~~~~~ 169 (316)
-||.++|+.|.+.|+..+-+.-=..- ......+.++-+. +++|+.-===| ..-++.....+|||-|.+=.+.+.+.
T Consensus 139 ~dp~~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIaaiL~~~- 217 (338)
T PLN02460 139 FDPVEIAQAYEKGGAACLSVLTDEKYFQGSFENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIAAVLPDL- 217 (338)
T ss_pred CCHHHHHHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHHHhCCHH-
Confidence 48999999999999876554321111 1233334333334 67887543333 34778999999999988776666620
Q ss_pred CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHc-CCCEEEEeecCCccccCCCCHHH
Q 021156 170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLAS-YADEFLVHGVDVEGKKLGIDDEL 248 (316)
Q Consensus 170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~-Ga~~ilvtdi~~dG~~~G~d~el 248 (316)
....+-++++.+| +++- |-++ ..+.+....+. |++-|-++.++.+.. ..|++.
T Consensus 218 -~L~~l~~~A~~LG-------me~L-------VEVH---------~~~ElerAl~~~ga~iIGINNRdL~Tf--~vDl~~ 271 (338)
T PLN02460 218 -DIKYMLKICKSLG-------MAAL-------IEVH---------DEREMDRVLGIEGVELIGINNRSLETF--EVDISN 271 (338)
T ss_pred -HHHHHHHHHHHcC-------CeEE-------EEeC---------CHHHHHHHHhcCCCCEEEEeCCCCCcc--eECHHH
Confidence 0233334444454 4432 2122 12445566676 999888898887522 247777
Q ss_pred HHHHhh-----c---CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCccc
Q 021156 249 VALLGK-----Y---SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLA 299 (316)
Q Consensus 249 i~~l~~-----~---~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~ 299 (316)
..++.. . .++-+++.+||.+.+|+.++.+.| +++|.||.++ +..+=+
T Consensus 272 t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~G--adAvLVGEsL--Mr~~dp 326 (338)
T PLN02460 272 TKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAG--VKAVLVGESL--VKQDDP 326 (338)
T ss_pred HHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCC--CCEEEECHHH--hCCCCH
Confidence 777765 1 134578999999999999999998 9999999999 876543
No 131
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=98.34 E-value=2.2e-06 Score=77.42 Aligned_cols=73 Identities=16% Similarity=0.116 Sum_probs=59.5
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhh
Q 021156 215 LDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDI 293 (316)
Q Consensus 215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~ 293 (316)
....|...+..| -++++.+ -.|+ ..|.++++++++.+ ++|++++|||++.+++++++++| +++|++|+++
T Consensus 137 ~~ayA~aae~~g-~~ivyLe--~SG~--~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aG--AD~VVVGsai-- 207 (219)
T cd02812 137 AAAYALAAEYLG-MPIVYLE--YSGA--YGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAG--ADTIVVGNIV-- 207 (219)
T ss_pred HHHHHHHHHHcC-CeEEEeC--CCCC--cCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcC--CCEEEECchh--
Confidence 334456666667 5566555 3344 37999999999988 99999999999999999999998 9999999999
Q ss_pred ccC
Q 021156 294 FGG 296 (316)
Q Consensus 294 ~~g 296 (316)
+++
T Consensus 208 ~~~ 210 (219)
T cd02812 208 EED 210 (219)
T ss_pred hCC
Confidence 886
No 132
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.31 E-value=8.4e-06 Score=75.52 Aligned_cols=134 Identities=21% Similarity=0.180 Sum_probs=86.6
Q ss_pred CCCcEEEecCCCH------HH-HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe
Q 021156 132 YPGGLQVGGGINS------DN-SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT 204 (316)
Q Consensus 132 ~~~pl~vGGGIr~------e~-~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~ 204 (316)
.++|+..=+=.+. ++ ++.+.++|++.+++--...+. .+.+.+..+++|-+.+ +.+.-
T Consensus 86 ~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee----~~~~~~~~~~~gl~~i-~lv~P----------- 149 (256)
T TIGR00262 86 PNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEE----SGDLVEAAKKHGVKPI-FLVAP----------- 149 (256)
T ss_pred CCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHH----HHHHHHHHHHCCCcEE-EEECC-----------
Confidence 4678652222233 44 888889999998887665543 4444455566653322 22221
Q ss_pred CCcceecccCHHHHHHHHHHcCCCEEEEeecC-Ccccc---CCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCC
Q 021156 205 DRWQKFSDVYLDERVLDFLASYADEFLVHGVD-VEGKK---LGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGI 280 (316)
Q Consensus 205 ~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~-~dG~~---~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~ 280 (316)
....+.++.+.+..-+.+.+..+. ..|.. .....+.++++++.++.||+++|||++.+++.++.+.|
T Consensus 150 --------~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~G- 220 (256)
T TIGR00262 150 --------NADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAG- 220 (256)
T ss_pred --------CCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcC-
Confidence 122355555656544455544432 22221 12246688888888889999999999999999999998
Q ss_pred CcCEEEEccch
Q 021156 281 GRVDVTVGSAL 291 (316)
Q Consensus 281 g~~gVivG~Al 291 (316)
+++|++|+|+
T Consensus 221 -ADgvVvGSai 230 (256)
T TIGR00262 221 -ADGVIVGSAI 230 (256)
T ss_pred -CCEEEECHHH
Confidence 9999999999
No 133
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=98.30 E-value=0.00022 Score=66.04 Aligned_cols=195 Identities=18% Similarity=0.182 Sum_probs=129.0
Q ss_pred HHHHHHHHHHcCCCcceEEEecCCcc---c----HHHHHHH---HH-hCCCcEEEecCC-C-H--HHHHHHHHcCCCEEE
Q 021156 95 AAEFANLYKEDGLTGGHAIMLGADPL---S----KAAAIEA---LH-AYPGGLQVGGGI-N-S--DNSLSYIEEGATHVI 159 (316)
Q Consensus 95 p~e~a~~~~~~G~~~l~lvDLda~~~---~----~~~i~~~---v~-~~~~pl~vGGGI-r-~--e~~~~~l~~Gad~VV 159 (316)
..+=|+.|++.|+|++.+=+....+- . ...|-.+ ++ .+++| +|=.+ + . +.+.-+...||+.|=
T Consensus 30 A~~ea~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p--~GvnvL~nd~~aal~iA~a~ga~FIR 107 (257)
T TIGR00259 30 AWKDAMALEEGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIP--LGINVLRNDAVAALAIAMAVGAKFIR 107 (257)
T ss_pred HHHHHHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCC--eeeeeecCCCHHHHHHHHHhCCCEEE
Confidence 34556778888999999877764421 1 2222222 32 45666 44444 3 2 345555678999765
Q ss_pred e----CCeeecCCC--CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcC-CCEEEE
Q 021156 160 V----TSYVFNNGQ--MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASY-ADEFLV 232 (316)
Q Consensus 160 i----gt~~~~~~~--~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~G-a~~ilv 232 (316)
+ |+..-..|- -+...+-+..+..| +.+.+--|++.+++ .. -.+.++.|.++.....+ ++.+++
T Consensus 108 v~~~~g~~~~d~G~~~~~a~e~~r~r~~l~-~~v~i~adV~~kh~--------~~-l~~~~~~e~a~~~~~~~~aDaviv 177 (257)
T TIGR00259 108 VNVLTGVYASDQGIIEGNAGELIRYKKLLG-SEVKILADIVVKHA--------VH-LGNRDLESIALDTVERGLADAVIL 177 (257)
T ss_pred EccEeeeEecccccccccHHHHHHHHHHcC-CCcEEEeceeeccc--------Cc-CCCCCHHHHHHHHHHhcCCCEEEE
Confidence 5 444322231 23455666777776 56767677753333 11 23457888899888887 999997
Q ss_pred eecCCccccCCCCHHHHHHHhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccC----cccHHHHHHHH
Q 021156 233 HGVDVEGKKLGIDDELVALLGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGG----NLAYKDVVAWH 307 (316)
Q Consensus 233 tdi~~dG~~~G~d~eli~~l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g----~~~~~~~~~~~ 307 (316)
|.. +|...+||+.++.+++. .+.|++++||+. ++.+.++++. ++|++|||.+= -.| +++.+.+.++.
T Consensus 178 tG~---~TG~~~d~~~l~~vr~~~~~~PvllggGvt-~eNv~e~l~~---adGviVgS~~K-~~G~~~n~~D~~rV~~Fm 249 (257)
T TIGR00259 178 SGK---TTGTEVDLELLKLAKETVKDTPVLAGSGVN-LENVEELLSI---ADGVIVATTIK-KDGVFNNFVDQARVSQFV 249 (257)
T ss_pred CcC---CCCCCCCHHHHHHHHhccCCCeEEEECCCC-HHHHHHHHhh---CCEEEECCCcc-cCCccCCCcCHHHHHHHH
Confidence 764 45566899999999874 478999999986 4788888886 79999999982 224 67888888877
Q ss_pred Hh
Q 021156 308 AQ 309 (316)
Q Consensus 308 ~~ 309 (316)
++
T Consensus 250 ~~ 251 (257)
T TIGR00259 250 EK 251 (257)
T ss_pred HH
Confidence 65
No 134
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=98.29 E-value=5.4e-05 Score=68.61 Aligned_cols=184 Identities=16% Similarity=0.101 Sum_probs=103.2
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCc----ccHHHHHHHHHhCCCcEEEe-cCCCHHHHHHHHHcCCCEEEeCCeeecCC
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADP----LSKAAAIEALHAYPGGLQVG-GGINSDNSLSYIEEGATHVIVTSYVFNNG 168 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~~v~~~~~pl~vG-GGIr~e~~~~~l~~Gad~VVigt~~~~~~ 168 (316)
.+.+.++...+.|.+.+. +.+.. .+...+.+.+++..+|+..= |... .+ --+||.+.+=|..=.+
T Consensus 15 ~~~~~~~~~~~~gtdai~---vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~~--~i----~~~aDa~l~~svlNs~- 84 (223)
T TIGR01768 15 EADEIAKAAAESGTDAIL---IGGSQGVTYEKTDTLIEALRRYGLPIILFPSNPT--NV----SRDADALFFPSVLNSD- 84 (223)
T ss_pred ccHHHHHHHHhcCCCEEE---EcCCCcccHHHHHHHHHHHhccCCCEEEeCCCcc--cc----CcCCCEEEEEEeecCC-
Confidence 355788888888888543 33332 34455566677767888742 3222 11 1347776554433222
Q ss_pred CCCHHHHHHHH----HHhcC--ceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH---HHH-cCCCEEEEeecCCc
Q 021156 169 QMDLERLKDLV----RVVGK--QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD---FLA-SYADEFLVHGVDVE 238 (316)
Q Consensus 169 ~~~~eli~ei~----~~~G~--~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~---~~~-~Ga~~ilvtdi~~d 238 (316)
||+++-... ..+++ ..++..--+-.+.|. .+.--+-.+....+..+.+.. ..+ .|.. ++|..-. .
T Consensus 85 --~~~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~-~v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~~-~vYlE~g-s 159 (223)
T TIGR01768 85 --DPYWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGG-AAARVTKAKPIPYDKEDLAAYAAMAEEMLGMP-IIYLEAG-S 159 (223)
T ss_pred --CchHHHhHHHHHHHHHhhhcceecceEEEEECCCc-ceeecccccccCCCcHHHHHHHHHHHHHcCCc-EEEEEec-C
Confidence 355533322 22211 233222221111221 222111111111233333222 222 2444 5555532 2
Q ss_pred cccCCCCHHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccC
Q 021156 239 GKKLGIDDELVALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGG 296 (316)
Q Consensus 239 G~~~G~d~eli~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g 296 (316)
|.....+.+.++++++.+ ++|++++|||++.+++++++++| +++|++|+++ +++
T Consensus 160 ~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aG--AD~VVVGs~~--~~d 214 (223)
T TIGR01768 160 GAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAG--ADTIVTGNVI--EED 214 (223)
T ss_pred CCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcC--CCEEEECcHH--hhC
Confidence 344555899999999887 89999999999999999999998 9999999999 886
No 135
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=98.28 E-value=1.3e-05 Score=77.26 Aligned_cols=171 Identities=20% Similarity=0.215 Sum_probs=108.5
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHh--------CCCcEEEecC--CC--H-HHHHHHHHcCCCEEEe
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA--------YPGGLQVGGG--IN--S-DNSLSYIEEGATHVIV 160 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~--------~~~pl~vGGG--Ir--~-e~~~~~l~~Gad~VVi 160 (316)
++ ++|..+++.| ++.++..+.........++.+++ ...++.|+.. ++ . +.++.+.++|+|.++|
T Consensus 50 e~-~mAiama~~G--glgvih~~~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~~L~~agvD~ivI 126 (352)
T PF00478_consen 50 ES-EMAIAMARLG--GLGVIHRNMSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAEALVEAGVDVIVI 126 (352)
T ss_dssp SH-HHHHHHHHTT--SEEEEESSSCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHHHHHHTT-SEEEE
T ss_pred hH-HHHHHHHHhc--CCceecCCCCHHHHHHHHhhhccccccccccccccceEEEEecCCHHHHHHHHHHHHcCCCEEEc
Confidence 44 5888888876 55666666543233334444432 2345666664 44 2 6689999999999999
Q ss_pred CCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEe------e
Q 021156 161 TSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVH------G 234 (316)
Q Consensus 161 gt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvt------d 234 (316)
.++--.+ +.-.+.++++.+.|+ +..++.=.+ -..+-++.+.+.|++.+.+- .
T Consensus 127 D~a~g~s-~~~~~~ik~ik~~~~-~~~viaGNV--------------------~T~e~a~~L~~aGad~vkVGiGpGsiC 184 (352)
T PF00478_consen 127 DSAHGHS-EHVIDMIKKIKKKFP-DVPVIAGNV--------------------VTYEGAKDLIDAGADAVKVGIGPGSIC 184 (352)
T ss_dssp E-SSTTS-HHHHHHHHHHHHHST-TSEEEEEEE---------------------SHHHHHHHHHTT-SEEEESSSSSTTB
T ss_pred cccCccH-HHHHHHHHHHHHhCC-CceEEeccc--------------------CCHHHHHHHHHcCCCEEEEeccCCccc
Confidence 8765443 111467888888885 322222222 12478889999999988541 2
Q ss_pred cCCccccCCC-CHHHHHHHh---hcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 235 VDVEGKKLGI-DDELVALLG---KYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 235 i~~dG~~~G~-d~eli~~l~---~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
.+|.-+.-|. -+..+.+.+ +..++|||+-|||++.-|+.+++..| ++.||+|+.|
T Consensus 185 tTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~G--Ad~VMlG~ll 243 (352)
T PF00478_consen 185 TTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAG--ADAVMLGSLL 243 (352)
T ss_dssp HHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT---SEEEESTTT
T ss_pred ccccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeec--ccceeechhh
Confidence 2333333343 444555554 34579999999999999999999999 8999999977
No 136
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=98.28 E-value=5.4e-05 Score=78.99 Aligned_cols=185 Identities=16% Similarity=0.082 Sum_probs=124.2
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCC-cccHHHHHHHHHhCCCcEEEecCC-CHHHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGAD-PLSKAAAIEALHAYPGGLQVGGGI-NSDNSLSYIEEGATHVIVTSYVFNNGQM 170 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~-~~~~~~i~~~v~~~~~pl~vGGGI-r~e~~~~~l~~Gad~VVigt~~~~~~~~ 170 (316)
.||.++|+.|.+.|+..+-+.-=.-- ..+...+..+.+.+++||.-===| ...++.+...+|||.|.+=...+.
T Consensus 70 ~d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~~GADavLLI~~~L~---- 145 (695)
T PRK13802 70 PDPAALAREYEQGGASAISVLTEGRRFLGSLDDFDKVRAAVHIPVLRKDFIVTDYQIWEARAHGADLVLLIVAALD---- 145 (695)
T ss_pred CCHHHHHHHHHHcCCcEEEEecCcCcCCCCHHHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCEeehhHhhcC----
Confidence 48999999999999886655421111 123444444444678887532223 357899999999999988777765
Q ss_pred CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHH
Q 021156 171 DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVA 250 (316)
Q Consensus 171 ~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~ 250 (316)
++.++++.+..- -+.+++- |-++ ..+.++...+.|++-|-++.++..-. ..|.+...
T Consensus 146 -~~~l~~l~~~a~----~lGme~L-------vEvh---------~~~el~~a~~~ga~iiGINnRdL~tf--~vd~~~t~ 202 (695)
T PRK13802 146 -DAQLKHLLDLAH----ELGMTVL-------VETH---------TREEIERAIAAGAKVIGINARNLKDL--KVDVNKYN 202 (695)
T ss_pred -HHHHHHHHHHHH----HcCCeEE-------EEeC---------CHHHHHHHHhCCCCEEEEeCCCCccc--eeCHHHHH
Confidence 344555544321 1223331 2111 23556677888999888898887522 35777777
Q ss_pred HHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156 251 LLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA 308 (316)
Q Consensus 251 ~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~ 308 (316)
+|.... ++.+|+.+||.+.+|+.++.+.| +++|+||.++ +..+=+-+.+.++..
T Consensus 203 ~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G--~davLIGesl--m~~~dp~~~~~~l~~ 258 (695)
T PRK13802 203 ELAADLPDDVIKVAESGVFGAVEVEDYARAG--ADAVLVGEGV--ATADDHELAVERLVK 258 (695)
T ss_pred HHHhhCCCCcEEEEcCCCCCHHHHHHHHHCC--CCEEEECHHh--hCCCCHHHHHHHHHh
Confidence 776654 46789999999999999999998 9999999999 887644344444443
No 137
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=98.26 E-value=1.3e-05 Score=78.48 Aligned_cols=88 Identities=14% Similarity=0.054 Sum_probs=70.4
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCcc---------ccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEE
Q 021156 215 LDERVLDFLASYADEFLVHGVDVEG---------KKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDV 285 (316)
Q Consensus 215 ~~e~a~~~~~~Ga~~ilvtdi~~dG---------~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gV 285 (316)
..++++.+++.|++.+-++.-..+. ...|..++..+.+++.+++||+++||+.+++++.++++.| .++.|
T Consensus 254 ~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g-~~D~V 332 (382)
T cd02931 254 GLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGRMEDPELASEAINEG-IADMI 332 (382)
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcC-CCCee
Confidence 4578899999999988776433221 1123446788888888999999999999999999999988 59999
Q ss_pred EEccchhhccCcccHHHHHH
Q 021156 286 TVGSALDIFGGNLAYKDVVA 305 (316)
Q Consensus 286 ivG~Al~~~~g~~~~~~~~~ 305 (316)
.+||++ ..+|..++++.+
T Consensus 333 ~~gR~~--ladP~l~~k~~~ 350 (382)
T cd02931 333 SLGRPL--LADPDVVNKIRR 350 (382)
T ss_pred eechHh--HhCccHHHHHHc
Confidence 999999 999987777643
No 138
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=98.25 E-value=1.5e-05 Score=75.47 Aligned_cols=145 Identities=25% Similarity=0.228 Sum_probs=102.7
Q ss_pred HH-HHHHHHcC-CCEEEeCCeeecCC-----CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHH
Q 021156 145 DN-SLSYIEEG-ATHVIVTSYVFNNG-----QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDE 217 (316)
Q Consensus 145 e~-~~~~l~~G-ad~VVigt~~~~~~-----~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e 217 (316)
+| +..+-+++ ||.+.++-..-+.+ ..+++.+.++.+.. ++..-+.+=+| ..= ..-+..+
T Consensus 112 ~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~v-k~~~~~Pv~vK---------l~P----~~~di~~ 177 (310)
T COG0167 112 ADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAV-KAATKVPVFVK---------LAP----NITDIDE 177 (310)
T ss_pred HHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHH-HhcccCceEEE---------eCC----CHHHHHH
Confidence 44 44444567 89988876554421 12588888888776 34444444443 211 1125788
Q ss_pred HHHHHHHcCCCEEEEeecCCc-----------------cccCCC-----CHHHHHHHhhcCC--CcEEEEeCCCCHHHHH
Q 021156 218 RVLDFLASYADEFLVHGVDVE-----------------GKKLGI-----DDELVALLGKYSP--IPVTYAGGVTTMADLE 273 (316)
Q Consensus 218 ~a~~~~~~Ga~~ilvtdi~~d-----------------G~~~G~-----d~eli~~l~~~~~--iPVIasGGI~s~eDi~ 273 (316)
.|+.+.+.|++.++++.-..+ |-++|+ -+++++++.+.++ +|+|..|||.|.+|+.
T Consensus 178 iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~ 257 (310)
T COG0167 178 IAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDAL 257 (310)
T ss_pred HHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHH
Confidence 999999999999876552221 233454 4567888888765 9999999999999999
Q ss_pred HHHHhCCCcCEEEEccchhhccCcccHHHHHHH
Q 021156 274 KIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAW 306 (316)
Q Consensus 274 ~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~ 306 (316)
+.+.+| ++.|-|++|+ +|.|+.-++++.+-
T Consensus 258 E~i~aG--A~~vQv~Tal-~~~Gp~i~~~I~~~ 287 (310)
T COG0167 258 EFILAG--ASAVQVGTAL-IYKGPGIVKEIIKG 287 (310)
T ss_pred HHHHcC--Cchheeeeee-eeeCchHHHHHHHH
Confidence 999999 8999999999 67789888887663
No 139
>PRK04302 triosephosphate isomerase; Provisional
Probab=98.25 E-value=2.9e-05 Score=70.33 Aligned_cols=131 Identities=16% Similarity=0.117 Sum_probs=82.3
Q ss_pred HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcC
Q 021156 147 SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASY 226 (316)
Q Consensus 147 ~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~G 226 (316)
++.+.++|++.|+++-.-+.. ..+.+.+..+..-...+.+-+++. + .+.++.+.+.+
T Consensus 78 ~~~l~~~G~~~vii~~ser~~---~~~e~~~~v~~a~~~Gl~~I~~v~-------------------~-~~~~~~~~~~~ 134 (223)
T PRK04302 78 PEAVKDAGAVGTLINHSERRL---TLADIEAVVERAKKLGLESVVCVN-------------------N-PETSAAAAALG 134 (223)
T ss_pred HHHHHHcCCCEEEEecccccc---CHHHHHHHHHHHHHCCCeEEEEcC-------------------C-HHHHHHHhcCC
Confidence 888888999999998742222 133344444332111111112321 1 23455667778
Q ss_pred CCEEEEeecCCccccCC---CCHH----HHHHHhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcc
Q 021156 227 ADEFLVHGVDVEGKKLG---IDDE----LVALLGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNL 298 (316)
Q Consensus 227 a~~ilvtdi~~dG~~~G---~d~e----li~~l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~ 298 (316)
.+.+-|..+..-|+..+ .+.+ .++.+++. .++||+++|||++.+++.++++.| ++||+||+|+ ..- =
T Consensus 135 ~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~g--adGvlVGsa~--l~~-~ 209 (223)
T PRK04302 135 PDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELG--ADGVLLASGV--VKA-K 209 (223)
T ss_pred CCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCC--CCEEEEehHH--hCC-c
Confidence 88777777655565444 2222 34445553 368999999999999999999988 9999999999 643 3
Q ss_pred cHHHHHH
Q 021156 299 AYKDVVA 305 (316)
Q Consensus 299 ~~~~~~~ 305 (316)
++.++.+
T Consensus 210 ~~~~~~~ 216 (223)
T PRK04302 210 DPEAALR 216 (223)
T ss_pred CHHHHHH
Confidence 4544443
No 140
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.24 E-value=4.3e-05 Score=76.70 Aligned_cols=172 Identities=17% Similarity=0.138 Sum_probs=107.2
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCC---cccHHHHHHHHHh-----CCCcEEEecCCC----H-HHHHHHHHcCCCEEE
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGAD---PLSKAAAIEALHA-----YPGGLQVGGGIN----S-DNSLSYIEEGATHVI 159 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~---~~~~~~i~~~v~~-----~~~pl~vGGGIr----~-e~~~~~l~~Gad~VV 159 (316)
.+..++.+.+.+.+...+-++|=++. -.....+.+.... ....+.||.-+. . +-++.+.++|++.++
T Consensus 163 ~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~~~~d~~grl~Vgaav~~~~~~~~ra~~Lv~aGVd~i~ 242 (475)
T TIGR01303 163 TEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYTPATDAAGRLRIGAAVGINGDVGGKAKALLDAGVDVLV 242 (475)
T ss_pred CcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCCchhhhccCceehheeeeCccHHHHHHHHHHhCCCEEE
Confidence 34556777777888887777763332 1122333332211 112455666552 2 558999999999999
Q ss_pred eCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEE--------
Q 021156 160 VTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFL-------- 231 (316)
Q Consensus 160 igt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~il-------- 231 (316)
++++- .+.+.-.+.++++.+.|. +..++ .+. ....+-++.+.+.|++.|-
T Consensus 243 ~D~a~-g~~~~~~~~i~~i~~~~~-~~~vi-~g~-------------------~~t~~~~~~l~~~G~d~i~vg~g~Gs~ 300 (475)
T TIGR01303 243 IDTAH-GHQVKMISAIKAVRALDL-GVPIV-AGN-------------------VVSAEGVRDLLEAGANIIKVGVGPGAM 300 (475)
T ss_pred EeCCC-CCcHHHHHHHHHHHHHCC-CCeEE-Eec-------------------cCCHHHHHHHHHhCCCEEEECCcCCcc
Confidence 99986 432222356666666663 22211 121 1234788899999999875
Q ss_pred EeecCCccccCCC-----CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 232 VHGVDVEGKKLGI-----DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 232 vtdi~~dG~~~G~-----d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
+|.... +.-|. +++..+.+++ .++|||+.|||++..|+.+++.+| ++.||+|+.+
T Consensus 301 ~ttr~~--~~~g~~~~~a~~~~~~~~~~-~~~~viadGgi~~~~di~kala~G--A~~vm~g~~~ 360 (475)
T TIGR01303 301 CTTRMM--TGVGRPQFSAVLECAAEARK-LGGHVWADGGVRHPRDVALALAAG--ASNVMVGSWF 360 (475)
T ss_pred ccCccc--cCCCCchHHHHHHHHHHHHH-cCCcEEEeCCCCCHHHHHHHHHcC--CCEEeechhh
Confidence 333222 22222 3333333333 389999999999999999999999 8999999987
No 141
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=98.23 E-value=8.2e-05 Score=65.08 Aligned_cols=160 Identities=20% Similarity=0.174 Sum_probs=107.8
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCcc----cHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADPL----SKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQ 169 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~~----~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~ 169 (316)
+-.+.+....+.|++.+++=+=+.... --..+.+.++..+.++++.. +.+-+.+.||+.|=++.....
T Consensus 13 ~~~~~l~~~~~~gv~~v~lR~k~~~~~~~~~~a~~l~~~~~~~~~~liin~-----~~~la~~~~~dGvHl~~~~~~--- 84 (180)
T PF02581_consen 13 DFLEQLEAALAAGVDLVQLREKDLSDEELLELARRLAELCQKYGVPLIIND-----RVDLALELGADGVHLGQSDLP--- 84 (180)
T ss_dssp HHHHHHHHHHHTT-SEEEEE-SSS-HHHHHHHHHHHHHHHHHTTGCEEEES------HHHHHHCT-SEEEEBTTSSS---
T ss_pred hHHHHHHHHHHCCCcEEEEcCCCCCccHHHHHHHHHHHHhhcceEEEEecC-----CHHHHHhcCCCEEEecccccc---
Confidence 455677777778888877777554322 12334455556778899887 666777899999988874433
Q ss_pred CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeec----CCccccCCCC
Q 021156 170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGV----DVEGKKLGID 245 (316)
Q Consensus 170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi----~~dG~~~G~d 245 (316)
+ .+..+.++++. +++..+. +. +.++++.+.|++.+.+-.+ ++.+. ....
T Consensus 85 --~---~~~r~~~~~~~-~ig~S~h-------------------~~-~e~~~a~~~g~dYv~~gpvf~T~sk~~~-~~~g 137 (180)
T PF02581_consen 85 --P---AEARKLLGPDK-IIGASCH-------------------SL-EEAREAEELGADYVFLGPVFPTSSKPGA-PPLG 137 (180)
T ss_dssp --H---HHHHHHHTTTS-EEEEEES-------------------SH-HHHHHHHHCTTSEEEEETSS--SSSSS--TTCH
T ss_pred --h---HHhhhhcccce-EEEeecC-------------------cH-HHHHHhhhcCCCEEEECCccCCCCCccc-cccC
Confidence 3 34444454444 4677663 23 3488888999999987555 33333 4458
Q ss_pred HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 246 DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 246 ~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
++.++++++..++||++-||| +.+++..+.+.| ++||.+-+|+
T Consensus 138 ~~~l~~~~~~~~~pv~AlGGI-~~~~i~~l~~~G--a~gvAvi~aI 180 (180)
T PF02581_consen 138 LDGLREIARASPIPVYALGGI-TPENIPELREAG--ADGVAVISAI 180 (180)
T ss_dssp HHHHHHHHHHTSSCEEEESS---TTTHHHHHHTT---SEEEESHHH
T ss_pred HHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcC--CCEEEEEeeC
Confidence 899999999889999999999 679999999998 8999887764
No 142
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=98.23 E-value=0.00049 Score=62.56 Aligned_cols=182 Identities=19% Similarity=0.154 Sum_probs=119.1
Q ss_pred HHHHHHHHcCCCcceEEEecCCc-cc---HHHHHHHHHh--CCCcEEEecCC-CH-HHHHHHHHcCCCEEEeCCeeecCC
Q 021156 97 EFANLYKEDGLTGGHAIMLGADP-LS---KAAAIEALHA--YPGGLQVGGGI-NS-DNSLSYIEEGATHVIVTSYVFNNG 168 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvDLda~~-~~---~~~i~~~v~~--~~~pl~vGGGI-r~-e~~~~~l~~Gad~VVigt~~~~~~ 168 (316)
+-++.+.+.|++++|+==+|+.. +| -+.+++.+++ .+.|+.|===+ +. .-++.+.++||+.+.+-.+.-.+
T Consensus 20 ~~i~~l~~~g~d~lHiDimDG~FVPN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~~H~Ea~~~- 98 (223)
T PRK08745 20 EEVDNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTISFHPEASRH- 98 (223)
T ss_pred HHHHHHHHcCCCEEEEecccCccCCCcccCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCccc-
Confidence 45556666799999998888763 22 2345555654 35664332223 45 44889999999999998886554
Q ss_pred CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHH
Q 021156 169 QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDEL 248 (316)
Q Consensus 169 ~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~el 248 (316)
+..+-+..+..| -+.-+++... .+.+..+.+.+ -++.+++..++-....+.+..+.
T Consensus 99 ---~~~~l~~Ir~~g-~k~GlalnP~-------------------T~~~~i~~~l~-~vD~VlvMtV~PGf~GQ~fi~~~ 154 (223)
T PRK08745 99 ---VHRTIQLIKSHG-CQAGLVLNPA-------------------TPVDILDWVLP-ELDLVLVMSVNPGFGGQAFIPSA 154 (223)
T ss_pred ---HHHHHHHHHHCC-CceeEEeCCC-------------------CCHHHHHHHHh-hcCEEEEEEECCCCCCccccHHH
Confidence 644444445566 3444444331 23455556655 48999999988766666665444
Q ss_pred HHH---Hhhc-----CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156 249 VAL---LGKY-----SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ 309 (316)
Q Consensus 249 i~~---l~~~-----~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~ 309 (316)
+++ +++. .++.+.+-|||. .+.+..+.++| ++.+++|+++ |... ++++..+..++
T Consensus 155 l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~aG--aDi~V~GSai--F~~~-d~~~~~~~lr~ 217 (223)
T PRK08745 155 LDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAAG--ADTFVAGSAI--FNAP-DYAQVIAQMRA 217 (223)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcC--CCEEEEChhh--hCCC-CHHHHHHHHHH
Confidence 433 3332 246699999998 68999999998 8999999999 7432 46666554443
No 143
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.23 E-value=9.8e-05 Score=67.85 Aligned_cols=157 Identities=14% Similarity=0.133 Sum_probs=95.1
Q ss_pred HHHHHH-hCCCcEEEec----CC-CHHH-HHHHHHcCCCEEEeCCeee---cCCCCCHHHHHHHHHHhcCceEEEeeeee
Q 021156 125 AIEALH-AYPGGLQVGG----GI-NSDN-SLSYIEEGATHVIVTSYVF---NNGQMDLERLKDLVRVVGKQRLVLDLSCR 194 (316)
Q Consensus 125 i~~~v~-~~~~pl~vGG----GI-r~e~-~~~~l~~Gad~VVigt~~~---~~~~~~~eli~ei~~~~G~~~IvvslD~k 194 (316)
+.+.++ .+++|+.+=+ -+ +.++ ++.+.++|++.+++=...+ ++ ++.+.+..+++|- +.++.+.-.
T Consensus 65 ~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~----~~~~~~~~~~~Gl-~~~~~v~p~ 139 (244)
T PRK13125 65 LLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDD----LEKYVEIIKNKGL-KPVFFTSPK 139 (244)
T ss_pred HHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHH----HHHHHHHHHHcCC-CEEEEECCC
Confidence 444444 3678874311 12 3455 8889999999999864332 22 4444455566663 334444321
Q ss_pred ecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC--C-HHHHHHHhhcC-CCcEEEEeCCCCHH
Q 021156 195 KKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI--D-DELVALLGKYS-PIPVTYAGGVTTMA 270 (316)
Q Consensus 195 ~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~--d-~eli~~l~~~~-~iPVIasGGI~s~e 270 (316)
.+.+.++.+.+. .+.++|..+.. |+.+.+ + .+.++++++.. +.|+++.|||++.+
T Consensus 140 -------------------T~~e~l~~~~~~-~~~~l~msv~~-~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e 198 (244)
T PRK13125 140 -------------------FPDLLIHRLSKL-SPLFIYYGLRP-ATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPE 198 (244)
T ss_pred -------------------CCHHHHHHHHHh-CCCEEEEEeCC-CCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHH
Confidence 234566666665 44455444421 222223 3 23666777665 57999999999999
Q ss_pred HHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156 271 DLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ 309 (316)
Q Consensus 271 Di~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~ 309 (316)
++.++.+.| ++++++|+++|..-+.-.++++.++++.
T Consensus 199 ~i~~~~~~g--aD~vvvGSai~~~~~~~~~~~~~~~~~~ 235 (244)
T PRK13125 199 DARDALSAG--ADGVVVGTAFIEELEKNGVESALNLLKK 235 (244)
T ss_pred HHHHHHHcC--CCEEEECHHHHHHHHhcCHHHHHHHHHH
Confidence 999999998 9999999999321011125666666654
No 144
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.20 E-value=0.00011 Score=65.06 Aligned_cols=158 Identities=16% Similarity=0.125 Sum_probs=106.7
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEEecCC-C-HHHHHHHHHcCCCEEEeCCeeecCCCCC
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGI-N-SDNSLSYIEEGATHVIVTSYVFNNGQMD 171 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~vGGGI-r-~e~~~~~l~~Gad~VVigt~~~~~~~~~ 171 (316)
+..++++...+.|++.+.+-+=+. ...+.++.+++..--+.+|+|. - .++++.++++||+.++++...
T Consensus 25 ~~~~~~~~~~~~Gv~~vqlr~k~~---~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~~~------- 94 (187)
T PRK07455 25 LGLQMAEAVAAGGMRLIEITWNSD---QPAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTPHVD------- 94 (187)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCC---CHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECCCCC-------
Confidence 455677777778888777775443 3344555555322124466555 3 588999999999999998854
Q ss_pred HHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHH
Q 021156 172 LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVAL 251 (316)
Q Consensus 172 ~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~ 251 (316)
++. .+..+..+.. .++. + .++ +.+.+..+.|++.+-+..- .+.. ..+.++.
T Consensus 95 ~~~-~~~~~~~~~~-~i~G--~-------------------~t~-~e~~~A~~~Gadyv~~Fpt---~~~~--G~~~l~~ 145 (187)
T PRK07455 95 PEL-IEAAVAQDIP-IIPG--A-------------------LTP-TEIVTAWQAGASCVKVFPV---QAVG--GADYIKS 145 (187)
T ss_pred HHH-HHHHHHcCCC-EEcC--c-------------------CCH-HHHHHHHHCCCCEEEECcC---Cccc--CHHHHHH
Confidence 333 3444545421 1122 1 123 4466777899998866332 1222 4567889
Q ss_pred HhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156 252 LGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG 295 (316)
Q Consensus 252 l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~ 295 (316)
+++.. ++|+++.||| +.+++.++++.| +++|.+++++ +.
T Consensus 146 ~~~~~~~ipvvaiGGI-~~~n~~~~l~aG--a~~vav~s~i--~~ 185 (187)
T PRK07455 146 LQGPLGHIPLIPTGGV-TLENAQAFIQAG--AIAVGLSGQL--FP 185 (187)
T ss_pred HHhhCCCCcEEEeCCC-CHHHHHHHHHCC--CeEEEEehhc--cc
Confidence 88776 6999999999 669999999998 9999999999 64
No 145
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.19 E-value=5.6e-05 Score=76.43 Aligned_cols=176 Identities=17% Similarity=0.146 Sum_probs=116.3
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCC--c-ccHHHHHHH------HHhCCCcEEEecCCCH----HHHHHHHHcCCCEEE
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGAD--P-LSKAAAIEA------LHAYPGGLQVGGGINS----DNSLSYIEEGATHVI 159 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~--~-~~~~~i~~~------v~~~~~pl~vGGGIr~----e~~~~~l~~Gad~VV 159 (316)
.+..+..+.+.+.+...+-++|=++. . .....+.+. .+.-...+.||.++.. +.++.+.++|+|.++
T Consensus 180 ~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~~P~a~~d~~grL~V~~av~~~~~~~ra~~Lv~aGvd~i~ 259 (502)
T PRK07107 180 TTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKENPLELLDSSKRYVVGAGINTRDYAERVPALVEAGADVLC 259 (502)
T ss_pred CcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcccChhhhhhhccCeeeeeccChhhHHHHHHHHHHhCCCeEe
Confidence 45557777788888998888875432 0 111112111 1112357889999952 558899999999999
Q ss_pred eCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEE--e----
Q 021156 160 VTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLV--H---- 233 (316)
Q Consensus 160 igt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilv--t---- 233 (316)
|+++--.+ +.-.+.++++.+.|+ .. +++. .| .+-..+.++.+.+.|++.+.+ +
T Consensus 260 vd~a~g~~-~~~~~~i~~ir~~~~-~~----~~V~--aG-------------nV~t~e~a~~li~aGAd~I~vg~g~Gs~ 318 (502)
T PRK07107 260 IDSSEGYS-EWQKRTLDWIREKYG-DS----VKVG--AG-------------NVVDREGFRYLAEAGADFVKVGIGGGSI 318 (502)
T ss_pred ecCccccc-HHHHHHHHHHHHhCC-CC----ceEE--ec-------------cccCHHHHHHHHHcCCCEEEECCCCCcC
Confidence 98554331 111467788877774 22 3332 22 112347888999999998865 1
Q ss_pred ecCCccccCCC-CHHHHHHHhhcC-------C--CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 234 GVDVEGKKLGI-DDELVALLGKYS-------P--IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 234 di~~dG~~~G~-d~eli~~l~~~~-------~--iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
..+|.-+.-|+ -+..+.++++.. + +|||+-|||++..|+.+++.+| ++.||+|+.+
T Consensus 319 c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~G--A~~vm~G~~~ 384 (502)
T PRK07107 319 CITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMG--ADFIMLGRYF 384 (502)
T ss_pred cccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcC--CCeeeeChhh
Confidence 12233344443 566666665532 3 8999999999999999999998 8999999987
No 146
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.19 E-value=3.8e-05 Score=74.70 Aligned_cols=137 Identities=20% Similarity=0.270 Sum_probs=86.2
Q ss_pred HHhCCCcEEEecCC-CH-HHHHHHHHcCCCEEEeCCee----ecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEE
Q 021156 129 LHAYPGGLQVGGGI-NS-DNSLSYIEEGATHVIVTSYV----FNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAI 202 (316)
Q Consensus 129 v~~~~~pl~vGGGI-r~-e~~~~~l~~Gad~VVigt~~----~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v 202 (316)
+++..+++.+.-.- .. +-++.+.++|+|.+++.... +..+.-+++.+.++.+.++ -.|++ =++
T Consensus 127 ~~~~~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~-ipVIa-G~V--------- 195 (368)
T PRK08649 127 IRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELD-VPVIV-GGC--------- 195 (368)
T ss_pred HHhCeEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCC-CCEEE-eCC---------
Confidence 33334555554433 34 66899999999999994322 1111113777777777653 11211 111
Q ss_pred EeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcc------ccCCCCHHH---HHHHhhc----------CCCcEEEE
Q 021156 203 VTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEG------KKLGIDDEL---VALLGKY----------SPIPVTYA 263 (316)
Q Consensus 203 ~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG------~~~G~d~el---i~~l~~~----------~~iPVIas 263 (316)
...+.++.+.+.|++.+.+ .+.. | ...|..... +.+.++. .++|||+.
T Consensus 196 -----------~t~e~A~~l~~aGAD~V~V-G~G~-Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAd 262 (368)
T PRK08649 196 -----------VTYTTALHLMRTGAAGVLV-GIGP-GAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIAD 262 (368)
T ss_pred -----------CCHHHHHHHHHcCCCEEEE-CCCC-CcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEe
Confidence 2246788888999999865 3322 2 123333333 3333221 15899999
Q ss_pred eCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 264 GGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 264 GGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
|||++..|+.+++.+| +++|++|+++
T Consensus 263 GGI~~~~diakAlalG--Ad~Vm~Gs~f 288 (368)
T PRK08649 263 GGIGTSGDIAKAIACG--ADAVMLGSPL 288 (368)
T ss_pred CCCCCHHHHHHHHHcC--CCeecccchh
Confidence 9999999999999998 9999999988
No 147
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=98.18 E-value=0.00028 Score=62.85 Aligned_cols=183 Identities=21% Similarity=0.153 Sum_probs=115.9
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCcc-c-HHHHHHHHHhCC-----CcEEEecCCCHHHHHH-HHHcCCCEEEeCCeee
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADPL-S-KAAAIEALHAYP-----GGLQVGGGINSDNSLS-YIEEGATHVIVTSYVF 165 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~~-~-~~~i~~~v~~~~-----~pl~vGGGIr~e~~~~-~l~~Gad~VVigt~~~ 165 (316)
++. -++...+.|++.+.++.-+..+. . .....++.+.++ +++.+.- +.+++.. +.+.|+|.|=++..
T Consensus 8 ~~e-d~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~--~~~~i~~ia~~~~~d~Vqlhg~-- 82 (203)
T cd00405 8 TLE-DALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALPPFVKRVGVFVNE--DLEEILEIAEELGLDVVQLHGD-- 82 (203)
T ss_pred CHH-HHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeCC--CHHHHHHHHHhcCCCEEEECCC--
Confidence 454 55666688999999997765432 2 333434433332 3333222 2355444 44679999988764
Q ss_pred cCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCc---cccC
Q 021156 166 NNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVE---GKKL 242 (316)
Q Consensus 166 ~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~d---G~~~ 242 (316)
++ ++.++++.+.+| .+++..+.+. .. ...+. ......+++.+++-.-+.. |+..
T Consensus 83 e~----~~~~~~l~~~~~-~~~i~~i~~~--~~---------------~~~~~-~~~~~~~aD~il~dt~~~~~~Gg~g~ 139 (203)
T cd00405 83 ES----PEYCAQLRARLG-LPVIKAIRVK--DE---------------EDLEK-AAAYAGEVDAILLDSKSGGGGGGTGK 139 (203)
T ss_pred CC----HHHHHHHHhhcC-CcEEEEEecC--Ch---------------hhHHH-hhhccccCCEEEEcCCCCCCCCCCcc
Confidence 23 778888887775 4455444442 00 01111 2334568898876332322 2344
Q ss_pred CCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156 243 GIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA 308 (316)
Q Consensus 243 G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~ 308 (316)
.+||++++++. .++|++++||+ +++.+.++++.+ ..+|+-+++++....|.-+++.+.++++
T Consensus 140 ~~~~~~l~~~~--~~~PvilaGGI-~~~Nv~~~i~~~-~~~gvdv~S~ie~~pg~kd~~ki~~~~~ 201 (203)
T cd00405 140 TFDWSLLRGLA--SRKPVILAGGL-TPDNVAEAIRLV-RPYGVDVSSGVETSPGIKDPEKIRAFIE 201 (203)
T ss_pred eEChHHhhccc--cCCCEEEECCC-ChHHHHHHHHhc-CCCEEEcCCcccCCCCCcCHHHHHHHHH
Confidence 56999998876 57899999999 899999999986 3799999999922225677777777665
No 148
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.18 E-value=4.2e-05 Score=72.88 Aligned_cols=167 Identities=16% Similarity=0.061 Sum_probs=106.8
Q ss_pred HHHHHHHHcC-CCcceE-EEecCCcccHHHHHHHHH-hCCCcEEEecCCCH---HHHHHHHH--cCCCEEEeCCeeecCC
Q 021156 97 EFANLYKEDG-LTGGHA-IMLGADPLSKAAAIEALH-AYPGGLQVGGGINS---DNSLSYIE--EGATHVIVTSYVFNNG 168 (316)
Q Consensus 97 e~a~~~~~~G-~~~l~l-vDLda~~~~~~~i~~~v~-~~~~pl~vGGGIr~---e~~~~~l~--~Gad~VVigt~~~~~~ 168 (316)
++|..+++.| +.-+|= .++ ..+....+.++ .....+.|.=|++. +.++.+++ +|+|.++|+++-=.+
T Consensus 61 ~mA~~la~~g~~~~iHk~~~~----e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs- 135 (346)
T PRK05096 61 EMAKALASFDILTAVHKHYSV----EEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSPALNFICIDVANGYS- 135 (346)
T ss_pred HHHHHHHHCCCeEEEecCCCH----HHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcH-
Confidence 7999999987 322221 111 11222222233 22345777888873 55888888 499999999875332
Q ss_pred CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEE------eecCCccccC
Q 021156 169 QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLV------HGVDVEGKKL 242 (316)
Q Consensus 169 ~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilv------tdi~~dG~~~ 242 (316)
+.-.+.++++.+.|+ +..++.=. +-..+.++.+.+.|++.+-+ ...++.-+.-
T Consensus 136 ~~~i~~ik~ik~~~P-~~~vIaGN--------------------V~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGv 194 (346)
T PRK05096 136 EHFVQFVAKAREAWP-DKTICAGN--------------------VVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGV 194 (346)
T ss_pred HHHHHHHHHHHHhCC-CCcEEEec--------------------ccCHHHHHHHHHcCCCEEEEcccCCccccCcccccc
Confidence 112467777777774 32222211 12347889999999998731 1123333333
Q ss_pred CC-CHHHHHHHh---hcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 243 GI-DDELVALLG---KYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 243 G~-d~eli~~l~---~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
|. -+..+.+.+ ...++|||+-|||++.-|+.+.+.+| ++.||+|+.+
T Consensus 195 G~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaG--Ad~VMlGsll 245 (346)
T PRK05096 195 GYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGG--ADFVMLGGML 245 (346)
T ss_pred ChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHHcC--CCEEEeChhh
Confidence 43 445555543 44689999999999999999999998 8999999987
No 149
>PRK08005 epimerase; Validated
Probab=98.17 E-value=0.00053 Score=61.73 Aligned_cols=178 Identities=13% Similarity=0.100 Sum_probs=117.3
Q ss_pred HHHHHHHHcCCCcceEEEecCCc-cc---HHHHHHHHHh-CCCcEEEecCCC-HHH-HHHHHHcCCCEEEeCCeeecCCC
Q 021156 97 EFANLYKEDGLTGGHAIMLGADP-LS---KAAAIEALHA-YPGGLQVGGGIN-SDN-SLSYIEEGATHVIVTSYVFNNGQ 169 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvDLda~~-~~---~~~i~~~v~~-~~~pl~vGGGIr-~e~-~~~~l~~Gad~VVigt~~~~~~~ 169 (316)
+.++.+.++|++++|+==+|+.. +| -+.+++.+++ .+.|+-|===+. .++ ++.+.++||+.+.+-.++..+
T Consensus 17 ~el~~l~~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad~It~H~Ea~~~-- 94 (210)
T PRK08005 17 EALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFIHAESVQN-- 94 (210)
T ss_pred HHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCCEEEEcccCccC--
Confidence 45566677899999987788763 22 2334555543 455644333333 544 889999999999998887655
Q ss_pred CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHH
Q 021156 170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELV 249 (316)
Q Consensus 170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli 249 (316)
+..+-+..++.| -+.-+++... .+.+.++.+.+ -++.+++..++-.-..+.+..+.+
T Consensus 95 --~~~~l~~Ik~~G-~k~GlAlnP~-------------------Tp~~~i~~~l~-~vD~VlvMsV~PGf~GQ~f~~~~~ 151 (210)
T PRK08005 95 --PSEILADIRAIG-AKAGLALNPA-------------------TPLLPYRYLAL-QLDALMIMTSEPDGRGQQFIAAMC 151 (210)
T ss_pred --HHHHHHHHHHcC-CcEEEEECCC-------------------CCHHHHHHHHH-hcCEEEEEEecCCCccceecHHHH
Confidence 644444445566 3444555431 23455555555 489999999877655666766555
Q ss_pred HHHh---hcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156 250 ALLG---KYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA 305 (316)
Q Consensus 250 ~~l~---~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~ 305 (316)
++++ +.. ...+.+=|||+ .+.+..+.++| ++.+++|+++ |... ++++.++
T Consensus 152 ~KI~~l~~~~~~~~I~VDGGI~-~~~i~~l~~aG--ad~~V~Gsai--F~~~-d~~~~~~ 205 (210)
T PRK08005 152 EKVSQSREHFPAAECWADGGIT-LRAARLLAAAG--AQHLVIGRAL--FTTA-NYDVTLS 205 (210)
T ss_pred HHHHHHHHhcccCCEEEECCCC-HHHHHHHHHCC--CCEEEEChHh--hCCC-CHHHHHH
Confidence 5554 332 23699999998 57899999998 8999999999 7533 4555443
No 150
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=98.17 E-value=2.5e-05 Score=74.88 Aligned_cols=74 Identities=19% Similarity=0.257 Sum_probs=57.1
Q ss_pred HHHHHHHHHcCCCEEEEeecCCccccC-CCC--HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 216 DERVLDFLASYADEFLVHGVDVEGKKL-GID--DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~-G~d--~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
.+.++.+.+.|+|.+++...+.-|+.. ... +.++.++++.+++|||++|||.+-+++..++.+| ++||.+|+.+
T Consensus 146 ~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~iaaal~lG--A~gV~~GTrF 222 (330)
T PF03060_consen 146 VREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGIAAALALG--ADGVQMGTRF 222 (330)
T ss_dssp HHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHHHHHHHHCT---SEEEESHHH
T ss_pred HHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHHHHHHHHcC--CCEeecCCeE
Confidence 467889999999999999888766654 223 6688899999999999999999999999999999 9999999988
No 151
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=98.16 E-value=3.5e-05 Score=73.44 Aligned_cols=177 Identities=18% Similarity=0.082 Sum_probs=114.1
Q ss_pred HHHHHHHHcC-CCcceE-EEecCCcccHHHHHHHH-HhCCCcEEEecCCCH---HHHHHHHHcC--CCEEEeCCeeecCC
Q 021156 97 EFANLYKEDG-LTGGHA-IMLGADPLSKAAAIEAL-HAYPGGLQVGGGINS---DNSLSYIEEG--ATHVIVTSYVFNNG 168 (316)
Q Consensus 97 e~a~~~~~~G-~~~l~l-vDLda~~~~~~~i~~~v-~~~~~pl~vGGGIr~---e~~~~~l~~G--ad~VVigt~~~~~~ 168 (316)
++|..+++.| +.-+|= .+++ .+....+.+ +.....+.+.=|++. +.++.++++| +|.++|+++-=.+
T Consensus 60 ~mA~~la~~g~~~~iHk~~~~e----~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs- 134 (343)
T TIGR01305 60 EMAAALSQHSIFTAIHKHYSVD----EWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYS- 134 (343)
T ss_pred HHHHHHHHCCCeEEEeeCCCHH----HHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcH-
Confidence 6899999987 332222 1111 112222222 223345677888873 6688999985 9999999874332
Q ss_pred CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEe------ecCCccccC
Q 021156 169 QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVH------GVDVEGKKL 242 (316)
Q Consensus 169 ~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvt------di~~dG~~~ 242 (316)
+.-.+.++.+.+.|+ +..++.=. +-..|.++.+.+.|++.+.+- ..+|.-+.-
T Consensus 135 ~~~i~~ik~ir~~~p-~~~viaGN--------------------V~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gv 193 (343)
T TIGR01305 135 EHFVEFVKLVREAFP-EHTIMAGN--------------------VVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGV 193 (343)
T ss_pred HHHHHHHHHHHhhCC-CCeEEEec--------------------ccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCC
Confidence 112466777777773 33222211 123478889999999988532 234443444
Q ss_pred C-CCHHHHHHHhhc---CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHH
Q 021156 243 G-IDDELVALLGKY---SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDV 303 (316)
Q Consensus 243 G-~d~eli~~l~~~---~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~ 303 (316)
| |-+..+.++++. .++|||+=|||++.-|+.+++.+| ++.||+|+.+ -.+.-.+.++
T Consensus 194 g~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~G--Ad~VMlG~ll--AG~~Espg~~ 254 (343)
T TIGR01305 194 GYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAG--ADFVMLGGMF--AGHTESGGEV 254 (343)
T ss_pred CcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcC--CCEEEECHhh--hCcCcCccee
Confidence 5 567777776653 478999999999999999999998 8999999777 5554444444
No 152
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=98.14 E-value=1.7e-05 Score=69.83 Aligned_cols=99 Identities=17% Similarity=0.188 Sum_probs=77.5
Q ss_pred cEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCC----cccHHHHHHHH
Q 021156 54 VRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGAD----PLSKAAAIEAL 129 (316)
Q Consensus 54 ~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~----~~~~~~i~~~v 129 (316)
-++.-++|+++|+.-. . .+ +++++..+.++..--.++.++|+++- .++.+.+....
T Consensus 118 ~r~vvslD~k~~~Ll~--~---------------~~---ed~le~Vk~l~~~~~~~lIvLDi~aVGt~~G~~~E~l~~~~ 177 (229)
T COG1411 118 GRIVVSLDVKGGELLG--P---------------WL---EDFLETVKDLNYRRDPGLIVLDIGAVGTKSGPDYELLTKVL 177 (229)
T ss_pred cceEEEEecCCCeecC--C---------------Cc---hhHHHHHHHHhccCCCCeEEEEccccccccCCCHHHHHHHH
Confidence 5688899999988765 1 12 58999999998888899999999953 24444444444
Q ss_pred HhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHH
Q 021156 130 HAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLE 173 (316)
Q Consensus 130 ~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~e 173 (316)
....-|+.+||||+ .|+.+.++..|++-|.++|+.++ |..+.+
T Consensus 178 ~~s~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~-G~vple 221 (229)
T COG1411 178 ELSEHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHE-GVVPLE 221 (229)
T ss_pred HhccCceeecCCcCcHHHHHHHhcCCCceeeehhhhhc-CcCcHH
Confidence 45678999999999 79999999999999999999998 444333
No 153
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=98.14 E-value=2.8e-05 Score=75.26 Aligned_cols=149 Identities=15% Similarity=0.040 Sum_probs=97.1
Q ss_pred HHHHHHHcCCCEEEeCCe-----------eec---C---------CCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEE
Q 021156 146 NSLSYIEEGATHVIVTSY-----------VFN---N---------GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAI 202 (316)
Q Consensus 146 ~~~~~l~~Gad~VVigt~-----------~~~---~---------~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v 202 (316)
.++++.++|+|-|=|-.+ ..+ | .++..+.++.+.+.+|++ +.+.+ |. +.. ..
T Consensus 142 aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d-~~v~i--Ri-~~~-D~ 216 (353)
T cd02930 142 CAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGED-FIIIY--RL-SML-DL 216 (353)
T ss_pred HHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCC-ceEEE--Ee-ccc-cc
Confidence 466677899999977431 111 1 123447777887878743 22322 11 000 00
Q ss_pred EeCCcceecccCHHHHHHHHHHcCCCEEEEee-----cCC-cccc--CCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHH
Q 021156 203 VTDRWQKFSDVYLDERVLDFLASYADEFLVHG-----VDV-EGKK--LGIDDELVALLGKYSPIPVTYAGGVTTMADLEK 274 (316)
Q Consensus 203 ~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd-----i~~-dG~~--~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~ 274 (316)
...+|.. .+..++++.+++.|++.+-++. ... .... .+...+..+++++.+++||+++|++.+++++.+
T Consensus 217 ~~~g~~~---~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~ 293 (353)
T cd02930 217 VEGGSTW---EEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAER 293 (353)
T ss_pred CCCCCCH---HHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHH
Confidence 0012221 2467889999999999876521 111 1111 122456778899989999999999999999999
Q ss_pred HHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156 275 IKVAGIGRVDVTVGSALDIFGGNLAYKDVVA 305 (316)
Q Consensus 275 l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~ 305 (316)
+++.| +++.|.+||++ ..+|..++++++
T Consensus 294 ~i~~g-~~D~V~~gR~~--l~dP~~~~k~~~ 321 (353)
T cd02930 294 LLADG-DADMVSMARPF--LADPDFVAKAAA 321 (353)
T ss_pred HHHCC-CCChhHhhHHH--HHCccHHHHHHh
Confidence 99988 59999999999 999987777653
No 154
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.13 E-value=3.1e-05 Score=75.29 Aligned_cols=156 Identities=19% Similarity=0.067 Sum_probs=104.7
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCC---cccHHHHHHHHHhCCCcEEEecCCCH---HHHHHHHHcCCCEEEeCCeeec
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGAD---PLSKAAAIEALHAYPGGLQVGGGINS---DNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~---~~~~~~i~~~v~~~~~pl~vGGGIr~---e~~~~~l~~Gad~VVigt~~~~ 166 (316)
.||. ++....++|+.++ +++++- ..+...+...+... .-.. +.++.+-+.+++- .
T Consensus 56 td~~-fr~~~~~~Galgv--vsaegl~~~~~~~~~~~~QI~g~--------~~~~~~a~aa~~~~e~~~~~--------~ 116 (369)
T TIGR01304 56 VSPE-FAIELGELGGLGV--LNLEGLWGRHEDPDPAIAKIAEA--------YEEGDQAAATRLLQELHAAP--------L 116 (369)
T ss_pred cCHH-HHHHHHHcCCccc--ccchHHHhcCCCHHHHHHHHhhc--------CCChHHHHHHHHHHHcCCCc--------c
Confidence 4665 8888889997666 444332 12233333222211 1111 3445555555553 2
Q ss_pred CCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc-CC-C
Q 021156 167 NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK-LG-I 244 (316)
Q Consensus 167 ~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~-~G-~ 244 (316)
+ |+++.++.++.. +.. +.++ ++. +..+..++++.+++.|++.+.+|..+++..+ .| -
T Consensus 117 ~----p~l~~~ii~~vr-~a~---Vtvk-------iRl------~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~ 175 (369)
T TIGR01304 117 K----PELLGERIAEVR-DSG---VITA-------VRV------SPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSG 175 (369)
T ss_pred C----hHHHHHHHHHHH-hcc---eEEE-------Eec------CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCC
Confidence 3 899888888874 332 3333 111 1135789999999999999999998877655 33 3
Q ss_pred CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 245 DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 245 d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
||..+.++.+..++|||+ |++.+.+++.++++.| +++|++|+.-
T Consensus 176 ~p~~l~~~i~~~~IPVI~-G~V~t~e~A~~~~~aG--aDgV~~G~gg 219 (369)
T TIGR01304 176 EPLNLKEFIGELDVPVIA-GGVNDYTTALHLMRTG--AAGVIVGPGG 219 (369)
T ss_pred CHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHHcC--CCEEEECCCC
Confidence 788888888888999997 8899999999999987 9999988755
No 155
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.13 E-value=2.4e-05 Score=82.98 Aligned_cols=147 Identities=13% Similarity=0.074 Sum_probs=97.8
Q ss_pred HHHHHHcCCCEEEeCCe----------e----ecC---C------CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEE
Q 021156 147 SLSYIEEGATHVIVTSY----------V----FNN---G------QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIV 203 (316)
Q Consensus 147 ~~~~l~~Gad~VVigt~----------~----~~~---~------~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~ 203 (316)
++++.++|+|.|=|... . ++| | ++..|.++.+.+.+|++ ..++ +|. .
T Consensus 557 A~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~-~~v~--~ri-------~ 626 (765)
T PRK08255 557 ARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAE-KPMS--VRI-------S 626 (765)
T ss_pred HHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCC-CeeE--EEE-------c
Confidence 45666899999988544 1 111 1 23346777777777643 2233 231 1
Q ss_pred eCCccee--cccCHHHHHHHHHHcCCCEEEEeec-CCcc----ccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHH
Q 021156 204 TDRWQKF--SDVYLDERVLDFLASYADEFLVHGV-DVEG----KKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIK 276 (316)
Q Consensus 204 ~~gw~~~--~~~~~~e~a~~~~~~Ga~~ilvtdi-~~dG----~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~ 276 (316)
..+|.+. +..+..++++.+++.|++.+-++.- .... ...++..+..+++++.+++||+++|++.+.+++.+++
T Consensus 627 ~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l 706 (765)
T PRK08255 627 AHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSII 706 (765)
T ss_pred cccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHH
Confidence 1223221 1113568899999999998866531 1110 0123456677888888899999999999999999999
Q ss_pred HhCCCcCEEEEccchhhccCc-ccHHHHHHH
Q 021156 277 VAGIGRVDVTVGSALDIFGGN-LAYKDVVAW 306 (316)
Q Consensus 277 ~~G~g~~gVivG~Al~~~~g~-~~~~~~~~~ 306 (316)
+.| ++|.|++||++ +.+| |.++.+.++
T Consensus 707 ~~g-~~D~v~~gR~~--l~dP~~~~~~~~~~ 734 (765)
T PRK08255 707 AAG-RADLCALARPH--LADPAWTLHEAAEI 734 (765)
T ss_pred HcC-CcceeeEcHHH--HhCccHHHHHHHHc
Confidence 998 69999999999 9999 777666543
No 156
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=98.13 E-value=0.00028 Score=68.16 Aligned_cols=164 Identities=21% Similarity=0.144 Sum_probs=112.7
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCcc----cHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADPL----SKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQ 169 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~~----~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~ 169 (316)
+..+.+....+.|+..+++=+=+.... .-..+.+.++..+.++++-. +++-++..|||.|=+|-....
T Consensus 158 ~ll~~l~~al~~Gv~~VQLR~K~~~~~~~~~~a~~L~~l~~~~~~~lIIND-----~vdlAl~~~aDGVHLgq~dl~--- 229 (347)
T PRK02615 158 NLLEVVEAALKGGVTLVQYRDKTADDRQRLEEAKKLKELCHRYGALFIVND-----RVDIALAVDADGVHLGQEDLP--- 229 (347)
T ss_pred hHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeC-----hHHHHHHcCCCEEEeChhhcC---
Confidence 345566666667877666654443221 12234455556677888875 566778889999988764322
Q ss_pred CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc---CCCCH
Q 021156 170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK---LGIDD 246 (316)
Q Consensus 170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~---~G~d~ 246 (316)
+.+..+.+|++++ +++++. ++ +.+..+.+.|++.+.+-.+-...+. ....+
T Consensus 230 -----~~~aR~llg~~~i-IG~S~H-------------------s~-~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gl 283 (347)
T PRK02615 230 -----LAVARQLLGPEKI-IGRSTT-------------------NP-EEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGL 283 (347)
T ss_pred -----HHHHHHhcCCCCE-EEEecC-------------------CH-HHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCH
Confidence 2344444665554 666652 22 4567777889999876555333333 34578
Q ss_pred HHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccC
Q 021156 247 ELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGG 296 (316)
Q Consensus 247 eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g 296 (316)
+.++.+++..++||++-|||. .+++.+++..| +++|.+++++ +..
T Consensus 284 e~l~~~~~~~~iPv~AiGGI~-~~ni~~l~~~G--a~gVAvisaI--~~a 328 (347)
T PRK02615 284 EYLKYAAKEAPIPWFAIGGID-KSNIPEVLQAG--AKRVAVVRAI--MGA 328 (347)
T ss_pred HHHHHHHHhCCCCEEEECCCC-HHHHHHHHHcC--CcEEEEeHHH--hCC
Confidence 999999888899999999995 89999999998 9999999999 753
No 157
>PLN02826 dihydroorotate dehydrogenase
Probab=98.06 E-value=0.00011 Score=72.36 Aligned_cols=91 Identities=22% Similarity=0.207 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHcCCCEEEEeecC--------------CccccCCCC-----HHHHHHHhhcC--CCcEEEEeCCCCHHHH
Q 021156 214 YLDERVLDFLASYADEFLVHGVD--------------VEGKKLGID-----DELVALLGKYS--PIPVTYAGGVTTMADL 272 (316)
Q Consensus 214 ~~~e~a~~~~~~Ga~~ilvtdi~--------------~dG~~~G~d-----~eli~~l~~~~--~iPVIasGGI~s~eDi 272 (316)
++.++++.+.+.|++.|++++.. ..|-++|+. ++.++++.+.+ ++|||..|||.+.+|+
T Consensus 277 di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da 356 (409)
T PLN02826 277 DLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDA 356 (409)
T ss_pred HHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHH
Confidence 47788999999999999876521 123355653 56788887766 7999999999999999
Q ss_pred HHHHHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156 273 EKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH 307 (316)
Q Consensus 273 ~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~ 307 (316)
.+.+.+| ++.|-+++++ +|+|+..++++.+.+
T Consensus 357 ~e~i~AG--As~VQv~Ta~-~~~Gp~~i~~I~~eL 388 (409)
T PLN02826 357 YKKIRAG--ASLVQLYTAF-AYEGPALIPRIKAEL 388 (409)
T ss_pred HHHHHhC--CCeeeecHHH-HhcCHHHHHHHHHHH
Confidence 9999999 8999999997 466887666665543
No 158
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=98.05 E-value=0.00014 Score=65.12 Aligned_cols=142 Identities=18% Similarity=0.128 Sum_probs=96.6
Q ss_pred CcEEEecCCC-H--HHHHHHHHcCCCEEEe-CCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcce
Q 021156 134 GGLQVGGGIN-S--DNSLSYIEEGATHVIV-TSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQK 209 (316)
Q Consensus 134 ~pl~vGGGIr-~--e~~~~~l~~Gad~VVi-gt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~ 209 (316)
-++..+.=+- . -+++.++++|||.+.+ |.+.... ..-.-+..++|| +-+-+|.- +.
T Consensus 57 ~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g~A~~~T----I~~~i~~A~~~~---~~v~iDl~--~~----------- 116 (217)
T COG0269 57 KIIVADLKTADAGAIEARMAFEAGADWVTVLGAADDAT----IKKAIKVAKEYG---KEVQIDLI--GV----------- 116 (217)
T ss_pred CeEEeeeeecchhHHHHHHHHHcCCCEEEEEecCCHHH----HHHHHHHHHHcC---CeEEEEee--cC-----------
Confidence 3444444443 2 3588899999998766 4443333 445555556676 34556764 11
Q ss_pred ecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCH--HHHHHHhhcCC--CcEEEEeCCCCHHHHHHHHHhCCCcCEE
Q 021156 210 FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDD--ELVALLGKYSP--IPVTYAGGVTTMADLEKIKVAGIGRVDV 285 (316)
Q Consensus 210 ~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~--eli~~l~~~~~--iPVIasGGI~s~eDi~~l~~~G~g~~gV 285 (316)
.++.+.++++.+.|++.+++|- .+|-...|..| +.+.++++..+ .++-+.|||. ++++..+...| ++-+
T Consensus 117 ---~~~~~~~~~l~~~gvd~~~~H~-g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI~-~~~i~~~~~~~--~~iv 189 (217)
T COG0269 117 ---WDPEQRAKWLKELGVDQVILHR-GRDAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGIT-PEDIPLFKGIG--ADIV 189 (217)
T ss_pred ---CCHHHHHHHHHHhCCCEEEEEe-cccHhhcCCCccHHHHHHHHHhhccCceEEEecCCC-HHHHHHHhcCC--CCEE
Confidence 2577888888889999999875 34444455544 56777766554 6899999985 58999999998 8999
Q ss_pred EEccchhhccCcccHHHHHH
Q 021156 286 TVGSALDIFGGNLAYKDVVA 305 (316)
Q Consensus 286 ivG~Al~~~~g~~~~~~~~~ 305 (316)
|+|+++ .+.=++.+..+
T Consensus 190 IvGraI---t~a~dp~~~a~ 206 (217)
T COG0269 190 IVGRAI---TGAKDPAEAAR 206 (217)
T ss_pred EECchh---cCCCCHHHHHH
Confidence 999999 56556555544
No 159
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=98.04 E-value=5.1e-05 Score=73.63 Aligned_cols=74 Identities=16% Similarity=0.124 Sum_probs=60.4
Q ss_pred HHHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 216 DERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
.+.++.+.+.|++.|.+..--.-....++ +++.+.++++.+ ++|||++|||++-.|+.+++.+| +++|+||+.+
T Consensus 239 ~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalG--Ad~V~igR~~ 315 (367)
T TIGR02708 239 PEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASG--ADLVALGRPV 315 (367)
T ss_pred HHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcC--CCEEEEcHHH
Confidence 57899999999999876432222223455 689999998765 49999999999999999999998 9999999986
No 160
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.03 E-value=7.1e-05 Score=69.66 Aligned_cols=134 Identities=15% Similarity=0.207 Sum_probs=86.1
Q ss_pred CCCcEEEecCCC------HHH-HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe
Q 021156 132 YPGGLQVGGGIN------SDN-SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT 204 (316)
Q Consensus 132 ~~~pl~vGGGIr------~e~-~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~ 204 (316)
.++|+.+=+=.+ .|+ ++.+.++|+|.+++--...+. .+.+.+..+++|-+ .+.-+.-
T Consensus 90 ~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee----~~~~~~~~~~~gi~-~I~lv~P----------- 153 (263)
T CHL00200 90 IKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEE----SDYLISVCNLYNIE-LILLIAP----------- 153 (263)
T ss_pred CCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHH----HHHHHHHHHHcCCC-EEEEECC-----------
Confidence 467854433333 133 777788999999987766554 55555666667622 2222211
Q ss_pred CCcceecccCHHHHHHHHHHcCCCEEEEeec-CCccccCCC--C-HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCC
Q 021156 205 DRWQKFSDVYLDERVLDFLASYADEFLVHGV-DVEGKKLGI--D-DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGI 280 (316)
Q Consensus 205 ~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi-~~dG~~~G~--d-~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~ 280 (316)
-.+.+.++.+.+..-+.+.+.+. -..|...-. + .++++++++.++.|+.+++||++.++++++.+.|
T Consensus 154 --------tT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~G- 224 (263)
T CHL00200 154 --------TSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWN- 224 (263)
T ss_pred --------CCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcC-
Confidence 12345666666654444443332 112221111 2 2467778888899999999999999999999998
Q ss_pred CcCEEEEccch
Q 021156 281 GRVDVTVGSAL 291 (316)
Q Consensus 281 g~~gVivG~Al 291 (316)
+||||||+|+
T Consensus 225 -ADGvVVGSal 234 (263)
T CHL00200 225 -INGIVIGSAC 234 (263)
T ss_pred -CCEEEECHHH
Confidence 9999999999
No 161
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.03 E-value=9.8e-05 Score=68.52 Aligned_cols=133 Identities=22% Similarity=0.200 Sum_probs=82.6
Q ss_pred CCCcEEEecCCC------HHH-HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe
Q 021156 132 YPGGLQVGGGIN------SDN-SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT 204 (316)
Q Consensus 132 ~~~pl~vGGGIr------~e~-~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~ 204 (316)
.++|+.+=+=.+ .++ ++.+.++|++-+++--..++. .+.+.+..+++|-+-| +-+..
T Consensus 88 ~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee----~~~~~~~~~~~gl~~I-~lvap----------- 151 (258)
T PRK13111 88 PTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEE----AEELRAAAKKHGLDLI-FLVAP----------- 151 (258)
T ss_pred CCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHH----HHHHHHHHHHcCCcEE-EEeCC-----------
Confidence 457865544222 233 778888999999985433322 2233333355552222 11111
Q ss_pred CCcceecccCHHHHHHHHHHcCCCEEEEeec-CCccccCCC--C-HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCC
Q 021156 205 DRWQKFSDVYLDERVLDFLASYADEFLVHGV-DVEGKKLGI--D-DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGI 280 (316)
Q Consensus 205 ~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi-~~dG~~~G~--d-~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~ 280 (316)
....+.++.+.+..-+.+-+..+ ...|...+. + .+.++++++.+++|+++++||++.+|+.++.+.
T Consensus 152 --------~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-- 221 (258)
T PRK13111 152 --------TTTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAAV-- 221 (258)
T ss_pred --------CCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHh--
Confidence 12345666676666555433232 223433332 3 348899999889999999999999999999974
Q ss_pred CcCEEEEccch
Q 021156 281 GRVDVTVGSAL 291 (316)
Q Consensus 281 g~~gVivG~Al 291 (316)
++||+||+++
T Consensus 222 -ADGviVGSai 231 (258)
T PRK13111 222 -ADGVIVGSAL 231 (258)
T ss_pred -CCEEEEcHHH
Confidence 7999999999
No 162
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.03 E-value=3.3e-05 Score=74.77 Aligned_cols=148 Identities=16% Similarity=0.121 Sum_probs=93.8
Q ss_pred HHHHHHHcCCCEEEeCCe----------e-e---cC---C------CCCHHHHHHHHHHhcC---ceEEEeeeeeecCCe
Q 021156 146 NSLSYIEEGATHVIVTSY----------V-F---NN---G------QMDLERLKDLVRVVGK---QRLVLDLSCRKKDGK 199 (316)
Q Consensus 146 ~~~~~l~~Gad~VVigt~----------~-~---~~---~------~~~~eli~ei~~~~G~---~~IvvslD~k~~~g~ 199 (316)
.++++.++|+|-|=|..+ . . +| | ++..|.++.+.+.+|. ..+.+.+-+. ..
T Consensus 149 aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s---~~ 225 (353)
T cd04735 149 ATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFS---PE 225 (353)
T ss_pred HHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEEC---cc
Confidence 356667899999988642 1 1 11 1 2334677777777761 1222333211 10
Q ss_pred eEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccc--cCCC-CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHH
Q 021156 200 YAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGK--KLGI-DDELVALLGKYS--PIPVTYAGGVTTMADLEK 274 (316)
Q Consensus 200 ~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~--~~G~-d~eli~~l~~~~--~iPVIasGGI~s~eDi~~ 274 (316)
. ...+.. +.-+..++++.+++.|++.+-++.-..... ..++ +++..+.+++.+ ++||+++||+.+++++.+
T Consensus 226 -~-~~~~g~--~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~ 301 (353)
T cd04735 226 -E-PEEPGI--RMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALE 301 (353)
T ss_pred -c-ccCCCC--CHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHH
Confidence 0 001111 112456789999999999887765322221 1222 456666676655 799999999999999999
Q ss_pred HHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156 275 IKVAGIGRVDVTVGSALDIFGGNLAYKDVV 304 (316)
Q Consensus 275 l~~~G~g~~gVivG~Al~~~~g~~~~~~~~ 304 (316)
+++.| ++.|.+||++ ..+|..++.+.
T Consensus 302 ~l~~g--aD~V~~gR~l--iadPdl~~k~~ 327 (353)
T cd04735 302 ALETG--ADLVAIGRGL--LVDPDWVEKIK 327 (353)
T ss_pred HHHcC--CChHHHhHHH--HhCccHHHHHH
Confidence 99987 9999999999 88887666553
No 163
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=98.02 E-value=0.0018 Score=58.98 Aligned_cols=179 Identities=16% Similarity=0.042 Sum_probs=115.2
Q ss_pred HHHHHHHHcCCCcceEEEecCCc-cc---HHHHHHHHHhCCCcEEEecCC-CH-HHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156 97 EFANLYKEDGLTGGHAIMLGADP-LS---KAAAIEALHAYPGGLQVGGGI-NS-DNSLSYIEEGATHVIVTSYVFNNGQM 170 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvDLda~~-~~---~~~i~~~v~~~~~pl~vGGGI-r~-e~~~~~l~~Gad~VVigt~~~~~~~~ 170 (316)
+..+.+.++|++++|+==.|+.. +| -+.+++.++. ..|+.|===+ +. +-++.+.++|||.+.+-.+...+
T Consensus 29 ~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~-~~~~DvHLMv~~P~~~i~~~~~aGad~It~H~Ea~~~--- 104 (228)
T PRK08091 29 ETLTTLSENQLRLLHFDIADGQFSPFFTVGAIAIKQFPT-HCFKDVHLMVRDQFEVAKACVAAGADIVTLQVEQTHD--- 104 (228)
T ss_pred HHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHhCC-CCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCccc---
Confidence 56666777899999987788763 22 2334455553 4453332223 35 44889999999999998887554
Q ss_pred CHHHHHHHHHHhcC-ceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHH
Q 021156 171 DLERLKDLVRVVGK-QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELV 249 (316)
Q Consensus 171 ~~eli~ei~~~~G~-~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli 249 (316)
+..+-+..++.|. -+.-+++... .+.+.++.+.+. ++.+++..++-....+.+..+.+
T Consensus 105 -~~~~l~~Ik~~g~~~kaGlalnP~-------------------Tp~~~i~~~l~~-vD~VLiMtV~PGfgGQ~f~~~~l 163 (228)
T PRK08091 105 -LALTIEWLAKQKTTVLIGLCLCPE-------------------TPISLLEPYLDQ-IDLIQILTLDPRTGTKAPSDLIL 163 (228)
T ss_pred -HHHHHHHHHHCCCCceEEEEECCC-------------------CCHHHHHHHHhh-cCEEEEEEECCCCCCccccHHHH
Confidence 5444444455552 0333333321 234556666654 99999999887655666655444
Q ss_pred HHH---hhc-----CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHH
Q 021156 250 ALL---GKY-----SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAW 306 (316)
Q Consensus 250 ~~l---~~~-----~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~ 306 (316)
+++ ++. .+..+.+=|||+ .+.+.++.++| ++.+++|+++ |..+ ++++..+.
T Consensus 164 ~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~aG--aD~~V~GSal--F~~~-d~~~~i~~ 222 (228)
T PRK08091 164 DRVIQVENRLGNRRVEKLISIDGSMT-LELASYLKQHQ--IDWVVSGSAL--FSQG-ELKTTLKE 222 (228)
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHCC--CCEEEEChhh--hCCC-CHHHHHHH
Confidence 444 322 245689999988 57899999998 8999999999 7532 45555443
No 164
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=98.01 E-value=0.0011 Score=60.14 Aligned_cols=165 Identities=11% Similarity=0.106 Sum_probs=109.3
Q ss_pred CHHHHHHHHHHcC-CCcceEEEecCCcc----cHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCC
Q 021156 94 SAAEFANLYKEDG-LTGGHAIMLGADPL----SKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNG 168 (316)
Q Consensus 94 ~p~e~a~~~~~~G-~~~l~lvDLda~~~----~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~ 168 (316)
+..+.++...+.| +..+++=+=+.... --..+.+.++..++++++-. +++-+++.|||-|=+|.....
T Consensus 27 ~~~~~l~~al~~G~v~~vQlR~K~l~~~~~~~~a~~l~~l~~~~gv~liINd-----~~dlA~~~~adGVHLg~~d~~-- 99 (221)
T PRK06512 27 ELAKLLRAALQGGDVASVILPQYGLDEATFQKQAEKLVPVIQEAGAAALIAG-----DSRIAGRVKADGLHIEGNLAA-- 99 (221)
T ss_pred cHHHHHHHHHcCCCccEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEeC-----HHHHHHHhCCCEEEECccccC--
Confidence 3455666666677 57666654333211 12234445556678888875 577778889998888865322
Q ss_pred CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCc--cccCCCCH
Q 021156 169 QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVE--GKKLGIDD 246 (316)
Q Consensus 169 ~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~d--G~~~G~d~ 246 (316)
+.+..+..|++.+ +++.+. + + .+.+.+..+.|++.+.+-.+-.. .......+
T Consensus 100 ------~~~~r~~~~~~~i-iG~s~~--~----------------s-~~~a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl 153 (221)
T PRK06512 100 ------LAEAIEKHAPKMI-VGFGNL--R----------------D-RHGAMEIGELRPDYLFFGKLGADNKPEAHPRNL 153 (221)
T ss_pred ------HHHHHHhcCCCCE-EEecCC--C----------------C-HHHHHHhhhcCCCEEEECCCCCCCCCCCCCCCh
Confidence 4566666665543 566532 1 1 23455667899999876444211 11122267
Q ss_pred HHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccC
Q 021156 247 ELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGG 296 (316)
Q Consensus 247 eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g 296 (316)
+.++++++.+++||++-||| +.+++.++.+.| ++||.+-+++ +..
T Consensus 154 ~~l~~~~~~~~iPvvAIGGI-~~~n~~~~~~~G--A~giAvisai--~~~ 198 (221)
T PRK06512 154 SLAEWWAEMIEIPCIVQAGS-DLASAVEVAETG--AEFVALERAV--FDA 198 (221)
T ss_pred HHHHHHHHhCCCCEEEEeCC-CHHHHHHHHHhC--CCEEEEhHHh--hCC
Confidence 88888888889999999999 889999999998 9999999999 643
No 165
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=98.01 E-value=0.00016 Score=70.84 Aligned_cols=141 Identities=16% Similarity=0.089 Sum_probs=93.8
Q ss_pred CcEEEecCCC-H-HH-HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCccee
Q 021156 134 GGLQVGGGIN-S-DN-SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKF 210 (316)
Q Consensus 134 ~pl~vGGGIr-~-e~-~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~ 210 (316)
.++.+.==+. . .. ++.+.++||+.+.+-.+.-.. .++...+..+++| +.+.+|.- +
T Consensus 227 ~~I~~DLK~~Di~~~vv~~~a~aGAD~vTVH~ea~~~---ti~~ai~~akk~G---ikvgVD~l--n------------- 285 (391)
T PRK13307 227 AFIVADLKTLDTGNLEARMAADATADAVVISGLAPIS---TIEKAIHEAQKTG---IYSILDML--N------------- 285 (391)
T ss_pred CeEEEEecccChhhHHHHHHHhcCCCEEEEeccCCHH---HHHHHHHHHHHcC---CEEEEEEc--C-------------
Confidence 4555555443 2 23 667789999999887654221 1333444445565 34555543 1
Q ss_pred cccCHHHHHHHHHHcCCCEEEEee-cCCccccCCCCHHHHHHHhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEc
Q 021156 211 SDVYLDERVLDFLASYADEFLVHG-VDVEGKKLGIDDELVALLGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVG 288 (316)
Q Consensus 211 ~~~~~~e~a~~~~~~Ga~~ilvtd-i~~dG~~~G~d~eli~~l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG 288 (316)
.-++.+.++.+ ..+++.+++|. ++.. .+.+-|+.++++++. .++++.+.|||+ .+++..+.+.| ++.+++|
T Consensus 286 -p~tp~e~i~~l-~~~vD~Vllht~vdp~--~~~~~~~kI~~ikk~~~~~~I~VdGGI~-~eti~~l~~aG--ADivVVG 358 (391)
T PRK13307 286 -VEDPVKLLESL-KVKPDVVELHRGIDEE--GTEHAWGNIKEIKKAGGKILVAVAGGVR-VENVEEALKAG--ADILVVG 358 (391)
T ss_pred -CCCHHHHHHHh-hCCCCEEEEccccCCC--cccchHHHHHHHHHhCCCCcEEEECCcC-HHHHHHHHHcC--CCEEEEe
Confidence 01356777776 67899999885 6665 335667778877763 578999999999 78899999998 8999999
Q ss_pred cchhhccCcccHHHHHH
Q 021156 289 SALDIFGGNLAYKDVVA 305 (316)
Q Consensus 289 ~Al~~~~g~~~~~~~~~ 305 (316)
|++ |... ++++..+
T Consensus 359 saI--f~a~-Dp~~aak 372 (391)
T PRK13307 359 RAI--TKSK-DVRRAAE 372 (391)
T ss_pred HHH--hCCC-CHHHHHH
Confidence 999 7433 4444443
No 166
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.01 E-value=0.00017 Score=70.22 Aligned_cols=120 Identities=19% Similarity=0.242 Sum_probs=78.9
Q ss_pred HHHHHHHHcCCCEEEeCCeeec----CCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHH
Q 021156 145 DNSLSYIEEGATHVIVTSYVFN----NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVL 220 (316)
Q Consensus 145 e~~~~~l~~Gad~VVigt~~~~----~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~ 220 (316)
+-++.+.++|++.+++-..+.. .+.-+|..+.++.+.++ -.|+. =++ ...+.++
T Consensus 146 e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~-IPVI~-G~V--------------------~t~e~A~ 203 (369)
T TIGR01304 146 EIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELD-VPVIA-GGV--------------------NDYTTAL 203 (369)
T ss_pred HHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCC-CCEEE-eCC--------------------CCHHHHH
Confidence 5588899999999998533211 12224777888887763 22221 121 1236677
Q ss_pred HHHHcCCCEEEEeecCCccc-----cCC--C-CHHHHHHHhh-------cC---CCcEEEEeCCCCHHHHHHHHHhCCCc
Q 021156 221 DFLASYADEFLVHGVDVEGK-----KLG--I-DDELVALLGK-------YS---PIPVTYAGGVTTMADLEKIKVAGIGR 282 (316)
Q Consensus 221 ~~~~~Ga~~ilvtdi~~dG~-----~~G--~-d~eli~~l~~-------~~---~iPVIasGGI~s~eDi~~l~~~G~g~ 282 (316)
++.+.|++.|+ +.+-|. ..| . ....+.++++ .+ .+|||+.|||++..|+.+++.+| +
T Consensus 204 ~~~~aGaDgV~---~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlG--A 278 (369)
T TIGR01304 204 HLMRTGAAGVI---VGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACG--A 278 (369)
T ss_pred HHHHcCCCEEE---ECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcC--C
Confidence 78889999886 222221 112 2 2334444432 12 38999999999999999999998 9
Q ss_pred CEEEEccch
Q 021156 283 VDVTVGSAL 291 (316)
Q Consensus 283 ~gVivG~Al 291 (316)
++|++|+++
T Consensus 279 daV~iGt~~ 287 (369)
T TIGR01304 279 DAVVLGSPL 287 (369)
T ss_pred CEeeeHHHH
Confidence 999999988
No 167
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=98.00 E-value=0.00058 Score=61.48 Aligned_cols=174 Identities=17% Similarity=0.109 Sum_probs=123.5
Q ss_pred HHHHHHHHHcCCCcceEEEecCCccc----HHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCC
Q 021156 96 AEFANLYKEDGLTGGHAIMLGADPLS----KAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMD 171 (316)
Q Consensus 96 ~e~a~~~~~~G~~~l~lvDLda~~~~----~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~ 171 (316)
.+.++...+.|.+-+.+-+=+..... -..+.+++++.++|+.+.+ +++-+++.|||.|=+|.....
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~v~liINd-----~~dlA~~~~AdGVHlGq~D~~----- 93 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKDLSDEEYLALAEKLRALCQKYGVPLIIND-----RVDLALAVGADGVHLGQDDMP----- 93 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHHHHHHHhCCeEEecC-----cHHHHHhCCCCEEEcCCcccc-----
Confidence 56777777788888888776654322 2345556677889999987 566677899999999987444
Q ss_pred HHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeec----CCccccCCCCHH
Q 021156 172 LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGV----DVEGKKLGIDDE 247 (316)
Q Consensus 172 ~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi----~~dG~~~G~d~e 247 (316)
+.+..+.+++ ..++.+.+. -.+.+.+..+.|++.+.+-.+ +..+. ....++
T Consensus 94 ---~~~ar~~~~~-~~iIG~S~h--------------------~~eea~~A~~~g~DYv~~GpifpT~tK~~~-~~~G~~ 148 (211)
T COG0352 94 ---LAEARELLGP-GLIIGLSTH--------------------DLEEALEAEELGADYVGLGPIFPTSTKPDA-PPLGLE 148 (211)
T ss_pred ---hHHHHHhcCC-CCEEEeecC--------------------CHHHHHHHHhcCCCEEEECCcCCCCCCCCC-CccCHH
Confidence 3455555653 444666553 146788888999998865333 44444 444789
Q ss_pred HHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156 248 LVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ 309 (316)
Q Consensus 248 li~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~ 309 (316)
.++++.+...+|+++-|||. .+.+.++++.| ++||.+-||+ +...=....+.++.++
T Consensus 149 ~l~~~~~~~~iP~vAIGGi~-~~nv~~v~~~G--a~gVAvvsai--~~a~d~~~a~~~~~~~ 205 (211)
T COG0352 149 GLREIRELVNIPVVAIGGIN-LENVPEVLEAG--ADGVAVVSAI--TSAADPAAAAKALRNA 205 (211)
T ss_pred HHHHHHHhCCCCEEEEcCCC-HHHHHHHHHhC--CCeEEehhHh--hcCCCHHHHHHHHHHH
Confidence 99999888889999999986 58899999998 9999999999 6544333334444443
No 168
>PLN02591 tryptophan synthase
Probab=97.99 E-value=0.00011 Score=67.97 Aligned_cols=134 Identities=21% Similarity=0.197 Sum_probs=82.8
Q ss_pred CCCcEEEecCCC------HHH-HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe
Q 021156 132 YPGGLQVGGGIN------SDN-SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT 204 (316)
Q Consensus 132 ~~~pl~vGGGIr------~e~-~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~ 204 (316)
..+|+.+=+=.+ .++ ++++.++|++-+++--..++. .+.+.+..+++|=+ .+..+.-
T Consensus 77 ~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee----~~~~~~~~~~~gl~-~I~lv~P----------- 140 (250)
T PLN02591 77 LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEE----TEALRAEAAKNGIE-LVLLTTP----------- 140 (250)
T ss_pred CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHH----HHHHHHHHHHcCCe-EEEEeCC-----------
Confidence 567865444333 133 777788999999886544332 33344444555421 2222211
Q ss_pred CCcceecccCHHHHHHHHHHcCCCEEEEee-cCCccccCCC--CHH-HHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCC
Q 021156 205 DRWQKFSDVYLDERVLDFLASYADEFLVHG-VDVEGKKLGI--DDE-LVALLGKYSPIPVTYAGGVTTMADLEKIKVAGI 280 (316)
Q Consensus 205 ~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd-i~~dG~~~G~--d~e-li~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~ 280 (316)
-...+.++...+..-+.+-+-+ .-..|...+. +.+ .++++++.+++||.++-||++.+|+.++.+.|
T Consensus 141 --------tt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~G- 211 (250)
T PLN02591 141 --------TTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWG- 211 (250)
T ss_pred --------CCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcC-
Confidence 0123455555555444332222 2223443342 433 58888888899999999999999999999998
Q ss_pred CcCEEEEccch
Q 021156 281 GRVDVTVGSAL 291 (316)
Q Consensus 281 g~~gVivG~Al 291 (316)
++||+||||+
T Consensus 212 -ADGvIVGSal 221 (250)
T PLN02591 212 -ADGVIVGSAM 221 (250)
T ss_pred -CCEEEECHHH
Confidence 9999999999
No 169
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.99 E-value=8.8e-05 Score=72.17 Aligned_cols=99 Identities=16% Similarity=0.176 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC--CHHHH
Q 021156 172 LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI--DDELV 249 (316)
Q Consensus 172 ~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~--d~eli 249 (316)
|+++.++.+...+.. +.+-++ . +..+..+.++.+.+.|++.+.+|..+++..+.+. |++.+
T Consensus 117 p~l~~~iv~~~~~~~--V~v~vr---------~------~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i 179 (368)
T PRK08649 117 PELITERIAEIRDAG--VIVAVS---------L------SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNL 179 (368)
T ss_pred HHHHHHHHHHHHhCe--EEEEEe---------c------CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHH
Confidence 888888887773222 222222 1 1235779999999999999999999888776543 78888
Q ss_pred HHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccc
Q 021156 250 ALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA 290 (316)
Q Consensus 250 ~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~A 290 (316)
.++.+..++|||+ |++.|.++.+++.+.| +++|++|+.
T Consensus 180 ~~~ik~~~ipVIa-G~V~t~e~A~~l~~aG--AD~V~VG~G 217 (368)
T PRK08649 180 KEFIYELDVPVIV-GGCVTYTTALHLMRTG--AAGVLVGIG 217 (368)
T ss_pred HHHHHHCCCCEEE-eCCCCHHHHHHHHHcC--CCEEEECCC
Confidence 8887777999999 8899999999999988 999999965
No 170
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=97.96 E-value=0.00048 Score=68.80 Aligned_cols=169 Identities=15% Similarity=0.074 Sum_probs=113.8
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCC---cccHHHHHHHHHhCCCcEEEecCC-CHHHHHHHHHcCCCEEEeCCeeecCC
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGAD---PLSKAAAIEALHAYPGGLQVGGGI-NSDNSLSYIEEGATHVIVTSYVFNNG 168 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~---~~~~~~i~~~v~~~~~pl~vGGGI-r~e~~~~~l~~Gad~VVigt~~~~~~ 168 (316)
-||.++|+.| +.|+..+-+ |.-. ..+...+..+.+.+.+|+.-===| ..-++.+...+|||.|.+=...+.
T Consensus 70 ~d~~~~a~~y-~~gA~aiSV--lTe~~~F~Gs~~~l~~vr~~v~~PvLrKDFiid~~QI~ea~~~GADavLLI~~~L~-- 144 (454)
T PRK09427 70 FDPAEIARVY-KHYASAISV--LTDEKYFQGSFDFLPIVRAIVTQPILCKDFIIDPYQIYLARYYGADAILLMLSVLD-- 144 (454)
T ss_pred CCHHHHHHHH-HcCCeEEEE--ecCcCcCCCCHHHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCchhHHHHhCC--
Confidence 4899999999 777654333 2211 134444444444677887643334 357899999999999888776666
Q ss_pred CCCHHHHHHHH---HHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCC
Q 021156 169 QMDLERLKDLV---RVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGID 245 (316)
Q Consensus 169 ~~~~eli~ei~---~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d 245 (316)
++.++++. +.+| +++- |-++ ..+.++...+.|++-+-++.++.... -.|
T Consensus 145 ---~~~l~~l~~~a~~lG-------l~~l-------vEvh---------~~~El~~al~~~a~iiGiNnRdL~t~--~vd 196 (454)
T PRK09427 145 ---DEQYRQLAAVAHSLN-------MGVL-------TEVS---------NEEELERAIALGAKVIGINNRNLRDL--SID 196 (454)
T ss_pred ---HHHHHHHHHHHHHcC-------CcEE-------EEEC---------CHHHHHHHHhCCCCEEEEeCCCCccc--eEC
Confidence 44445444 4444 3331 2111 13456677888999888898887522 247
Q ss_pred HHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCccc
Q 021156 246 DELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLA 299 (316)
Q Consensus 246 ~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~ 299 (316)
.+...++.... ++.+++.+||.+.+|+.++.. + ++++.||.++ +..+=+
T Consensus 197 ~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~~-~--~davLiG~~l--m~~~d~ 247 (454)
T PRK09427 197 LNRTRELAPLIPADVIVISESGIYTHAQVRELSP-F--ANGFLIGSSL--MAEDDL 247 (454)
T ss_pred HHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHHHh-c--CCEEEECHHH--cCCCCH
Confidence 77777776543 567899999999999999864 6 8999999999 876533
No 171
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=97.95 E-value=0.00012 Score=71.46 Aligned_cols=148 Identities=17% Similarity=0.078 Sum_probs=92.4
Q ss_pred HHHHHHHcCCCEEEeCCee----------ecC-------C------CCCHHHHHHHHHHhcCc-eEEEeeeeeecCCeeE
Q 021156 146 NSLSYIEEGATHVIVTSYV----------FNN-------G------QMDLERLKDLVRVVGKQ-RLVLDLSCRKKDGKYA 201 (316)
Q Consensus 146 ~~~~~l~~Gad~VVigt~~----------~~~-------~------~~~~eli~ei~~~~G~~-~IvvslD~k~~~g~~~ 201 (316)
.++++.++|+|-|=|..+- ..| | ++..|.++++.+.+|++ .|.+-+... + .
T Consensus 155 AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~--~---~ 229 (370)
T cd02929 155 AALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVD--E---L 229 (370)
T ss_pred HHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHH--H---h
Confidence 3556667999999775432 111 1 23457778887778743 122222211 0 0
Q ss_pred EEe-CCcceecccCHHHHHHHHHHcCCCEEEEee-------cCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHH
Q 021156 202 IVT-DRWQKFSDVYLDERVLDFLASYADEFLVHG-------VDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLE 273 (316)
Q Consensus 202 v~~-~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd-------i~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~ 273 (316)
... .++. .-+..++++.+++. ++.+-++. ........|+.+++.+.+++.+++||+++||+.+++++.
T Consensus 230 ~~~~g~~~---~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~ 305 (370)
T cd02929 230 IGPGGIES---EGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVTSKPVVGVGRFTSPDKMV 305 (370)
T ss_pred cCCCCCCC---HHHHHHHHHHHHhh-CCEEEecCCCccccccccccCCccccHHHHHHHHHHCCCCEEEeCCCCCHHHHH
Confidence 000 0111 11345677777654 55432211 000011245678888899988999999999999999999
Q ss_pred HHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156 274 KIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA 305 (316)
Q Consensus 274 ~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~ 305 (316)
++++.| .+|.|.+||++ ..+|..++++++
T Consensus 306 ~~l~~g-~~D~V~~gR~~--ladP~l~~k~~~ 334 (370)
T cd02929 306 EVVKSG-ILDLIGAARPS--IADPFLPKKIRE 334 (370)
T ss_pred HHHHcC-CCCeeeechHh--hhCchHHHHHHc
Confidence 999998 59999999999 999987776643
No 172
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.95 E-value=0.00019 Score=69.79 Aligned_cols=151 Identities=19% Similarity=0.115 Sum_probs=95.8
Q ss_pred HHHHHHcCCCEEEeCCee--------------ecC--C-------CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEE
Q 021156 147 SLSYIEEGATHVIVTSYV--------------FNN--G-------QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIV 203 (316)
Q Consensus 147 ~~~~l~~Gad~VVigt~~--------------~~~--~-------~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~ 203 (316)
++++.++|+|-|=|..+- ++| | ++..|.++.+.+.+|++. .+.+ |....+..-.
T Consensus 150 A~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~-~v~v--Ris~~~~~~~ 226 (361)
T cd04747 150 AADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDF-PIIL--RFSQWKQQDY 226 (361)
T ss_pred HHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCC-eEEE--EECccccccc
Confidence 556667899999776443 122 1 234577777777777543 2332 2110000000
Q ss_pred eCCcceecccCHHHHHHHHHHcCCCEEEEeecC-CccccCCCCHHHHHHHhhcCCCcEEEEeCC----------------
Q 021156 204 TDRWQKFSDVYLDERVLDFLASYADEFLVHGVD-VEGKKLGIDDELVALLGKYSPIPVTYAGGV---------------- 266 (316)
Q Consensus 204 ~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~-~dG~~~G~d~eli~~l~~~~~iPVIasGGI---------------- 266 (316)
..++. .+..+..++++.+.+.|++.+=+..-. ......|.++++.+++++.+++||++.|++
T Consensus 227 ~~~~g-~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~ 305 (361)
T cd04747 227 TARLA-DTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGA 305 (361)
T ss_pred ccCCC-CCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcCccchhHHHHHHHHcCCCEEEECCccccccccccccccccc
Confidence 00100 011134566777899999865332210 022345667888888888889999999999
Q ss_pred --CCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156 267 --TTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV 304 (316)
Q Consensus 267 --~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~ 304 (316)
.+++++.++++.| +++.|.+||++ ..+|..++++.
T Consensus 306 ~~~~~~~a~~~l~~g-~~D~V~~gR~~--iadP~~~~k~~ 342 (361)
T cd04747 306 SPASLDRLLERLERG-EFDLVAVGRAL--LSDPAWVAKVR 342 (361)
T ss_pred ccCCHHHHHHHHHCC-CCCeehhhHHH--HhCcHHHHHHH
Confidence 6999999999988 59999999999 99997766653
No 173
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.95 E-value=0.0018 Score=58.53 Aligned_cols=171 Identities=16% Similarity=0.182 Sum_probs=110.3
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCC--cEEEecCC-C-HHHHHHHHHcCCCEEEeCCeeecC
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPG--GLQVGGGI-N-SDNSLSYIEEGATHVIVTSYVFNN 167 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~--pl~vGGGI-r-~e~~~~~l~~Gad~VVigt~~~~~ 167 (316)
.+...+++.+.+.|+.-+-+.. ..+.....++.++ +.+- .+.+|.|- . .++++.+.++||+.+|- -
T Consensus 25 ~~a~~~~~al~~~Gi~~iEit~---~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fivs--P---- 95 (213)
T PRK06552 25 EEALKISLAVIKGGIKAIEVTY---TNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVS--P---- 95 (213)
T ss_pred HHHHHHHHHHHHCCCCEEEEEC---CCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEEC--C----
Confidence 3566788888887766444443 2233444445554 4432 28888776 4 59999999999999872 1
Q ss_pred CCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHH
Q 021156 168 GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDE 247 (316)
Q Consensus 168 ~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~e 247 (316)
-++++.++.. ++.| ++.+- | - .++ +.+....+.|++.+-+...+ ..| .+
T Consensus 96 -~~~~~v~~~~-~~~~----i~~iP-----G--------~-----~T~-~E~~~A~~~Gad~vklFPa~----~~G--~~ 144 (213)
T PRK06552 96 -SFNRETAKIC-NLYQ----IPYLP-----G--------C-----MTV-TEIVTALEAGSEIVKLFPGS----TLG--PS 144 (213)
T ss_pred -CCCHHHHHHH-HHcC----CCEEC-----C--------c-----CCH-HHHHHHHHcCCCEEEECCcc----cCC--HH
Confidence 1237766554 3443 22221 1 0 123 44566678999988764422 123 56
Q ss_pred HHHHHhhcCC-CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc--ccHHHHHHHHH
Q 021156 248 LVALLGKYSP-IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN--LAYKDVVAWHA 308 (316)
Q Consensus 248 li~~l~~~~~-iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~--~~~~~~~~~~~ 308 (316)
.++.++...+ +|+++.|||. .+.+.++++.| ++++.+|+++ +... -+++++.+.++
T Consensus 145 ~ik~l~~~~p~ip~~atGGI~-~~N~~~~l~aG--a~~vavgs~l--~~~~~~~~~~~i~~~a~ 203 (213)
T PRK06552 145 FIKAIKGPLPQVNVMVTGGVN-LDNVKDWFAAG--ADAVGIGGEL--NKLASQGDFDLITEKAK 203 (213)
T ss_pred HHHHHhhhCCCCEEEEECCCC-HHHHHHHHHCC--CcEEEEchHH--hCccccCCHHHHHHHHH
Confidence 7888887654 9999999998 68999999998 8999999999 6431 13345544443
No 174
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.92 E-value=0.0011 Score=59.88 Aligned_cols=172 Identities=16% Similarity=0.155 Sum_probs=113.1
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEEEecCCC--HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQVGGGIN--SDNSLSYIEEGATHVIVTSYVFNNGQ 169 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~vGGGIr--~e~~~~~l~~Gad~VVigt~~~~~~~ 169 (316)
++.+++++.+.+.|++-+-+. |+. +.....++.++ +.+ .+.+|.|-- .++++.++++||+.++.=..
T Consensus 27 ~~a~~i~~al~~~Gi~~iEit-l~~--~~~~~~I~~l~~~~p-~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~------ 96 (212)
T PRK05718 27 EDAVPLAKALVAGGLPVLEVT-LRT--PAALEAIRLIAKEVP-EALIGAGTVLNPEQLAQAIEAGAQFIVSPGL------ 96 (212)
T ss_pred HHHHHHHHHHHHcCCCEEEEe-cCC--ccHHHHHHHHHHHCC-CCEEEEeeccCHHHHHHHHHcCCCEEECCCC------
Confidence 356678888888888766666 332 23344445554 454 477887774 48999999999999876442
Q ss_pred CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHH
Q 021156 170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELV 249 (316)
Q Consensus 170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli 249 (316)
+++.++... +++ +++- -| -.++.| +..+.+.|++.+-+.+-+.-| ....+
T Consensus 97 -~~~vi~~a~-~~~-------i~~i--PG-------------~~TptE-i~~a~~~Ga~~vKlFPa~~~g-----g~~~l 146 (212)
T PRK05718 97 -TPPLLKAAQ-EGP-------IPLI--PG-------------VSTPSE-LMLGMELGLRTFKFFPAEASG-----GVKML 146 (212)
T ss_pred -CHHHHHHHH-HcC-------CCEe--CC-------------CCCHHH-HHHHHHCCCCEEEEccchhcc-----CHHHH
Confidence 266665544 333 2221 11 124555 888999999998776643222 44667
Q ss_pred HHHhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcc----cHHHHHHHHHh
Q 021156 250 ALLGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNL----AYKDVVAWHAQ 309 (316)
Q Consensus 250 ~~l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~----~~~~~~~~~~~ 309 (316)
+.++.. .++|++..|||.. +++.++++.| ...++.|+.+ +.... .++++.+.+++
T Consensus 147 k~l~~p~p~~~~~ptGGV~~-~ni~~~l~ag--~v~~vggs~L--~~~~~~~~~~~~~i~~~a~~ 206 (212)
T PRK05718 147 KALAGPFPDVRFCPTGGISP-ANYRDYLALP--NVLCIGGSWM--VPKDAIENGDWDRITRLARE 206 (212)
T ss_pred HHHhccCCCCeEEEeCCCCH-HHHHHHHhCC--CEEEEEChHh--CCcchhccccHHHHHHHHHH
Confidence 777653 5699999999987 8999999998 5566668888 65442 34555554444
No 175
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=4.3e-05 Score=74.13 Aligned_cols=115 Identities=14% Similarity=0.200 Sum_probs=92.0
Q ss_pred eCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcc
Q 021156 160 VTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEG 239 (316)
Q Consensus 160 igt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG 239 (316)
.|.+.+.+ |+.+..+.... -..+.+++++|++ .-. +.-+.+++.+++...|+..|-+|.+++|+
T Consensus 126 mgaalLt~----~dkl~~IL~sL-vk~~~vpvtckIR-------~L~----s~edtL~lv~ri~~tgi~ai~vh~rt~d~ 189 (477)
T KOG2334|consen 126 MGAALLTD----PDKLVAILYSL-VKGNKVPVTCKIR-------LLD----SKEDTLKLVKRICATGIAAITVHCRTRDE 189 (477)
T ss_pred CCchhhcC----HHHHHHHHHHH-HhcCcccceeEEE-------ecC----CcccHHHHHHHHHhcCCceEEEEeecccc
Confidence 47778887 88888887766 2345678887642 211 12257899999999999999999999999
Q ss_pred ccCCC-CHHHHHHHhhcCC-CcEEEEeCCCC---HHHHHHHHHhCCCcCEEEEccch
Q 021156 240 KKLGI-DDELVALLGKYSP-IPVTYAGGVTT---MADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 240 ~~~G~-d~eli~~l~~~~~-iPVIasGGI~s---~eDi~~l~~~G~g~~gVivG~Al 291 (316)
.-+.+ +.+.++++...+. +|||++||..+ ..|+....+.. +.++|||+++.
T Consensus 190 r~~~~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di~~~~~~~-~~~~vmiAR~A 245 (477)
T KOG2334|consen 190 RNQEPATKDYIREIAQACQMVPVIVNGGSMDIEQYSDIEDFQEKT-GADSVMIARAA 245 (477)
T ss_pred CCCCCCCHHHHHHHHHHhccceEeeccchhhHHhhhhHHHHHHHh-ccchhhhhHhh
Confidence 98877 8889999998876 99999999999 77888777765 58999999876
No 176
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=97.89 E-value=6.4e-05 Score=68.09 Aligned_cols=84 Identities=17% Similarity=0.149 Sum_probs=62.9
Q ss_pred HHHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhc
Q 021156 216 DERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIF 294 (316)
Q Consensus 216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~ 294 (316)
.-.++++++.||..+.-.. +--|+.+|. |...++.+.+..++|||+-+||+++.|...+.++| +++|++.+|+..-
T Consensus 134 ~v~akrL~d~GcaavMPlg-sPIGSg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG--~daVLvNTAiA~A 210 (247)
T PF05690_consen 134 PVLAKRLEDAGCAAVMPLG-SPIGSGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELG--ADAVLVNTAIAKA 210 (247)
T ss_dssp HHHHHHHHHTT-SEBEEBS-SSTTT---SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT---SEEEESHHHHTS
T ss_pred HHHHHHHHHCCCCEEEecc-cccccCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcC--CceeehhhHHhcc
Confidence 3589999999999764333 567999999 89999999988899999999999999999999999 9999999999444
Q ss_pred cCcccHHH
Q 021156 295 GGNLAYKD 302 (316)
Q Consensus 295 ~g~~~~~~ 302 (316)
.+|....+
T Consensus 211 ~dPv~MA~ 218 (247)
T PF05690_consen 211 KDPVAMAR 218 (247)
T ss_dssp SSHHHHHH
T ss_pred CCHHHHHH
Confidence 45544433
No 177
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=97.89 E-value=7.8e-05 Score=68.26 Aligned_cols=78 Identities=14% Similarity=0.124 Sum_probs=67.1
Q ss_pred HHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156 217 ERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG 295 (316)
Q Consensus 217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~ 295 (316)
-.++++++.||..+.-.. +--|+.+|. |...++.+.+..++||+..+||++.+|+..+.++| ++||.+++|+..-.
T Consensus 149 v~a~rLed~Gc~aVMPlg-sPIGSg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElG--aDgVL~nSaIakA~ 225 (267)
T CHL00162 149 MLAKHLEDIGCATVMPLG-SPIGSGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQAMELG--ASGVLLNTAVAQAK 225 (267)
T ss_pred HHHHHHHHcCCeEEeecc-CcccCCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcC--CCEEeecceeecCC
Confidence 589999999999764332 556899999 99999999998899999999999999999999999 99999999993333
Q ss_pred Cc
Q 021156 296 GN 297 (316)
Q Consensus 296 g~ 297 (316)
++
T Consensus 226 dP 227 (267)
T CHL00162 226 NP 227 (267)
T ss_pred CH
Confidence 33
No 178
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=97.88 E-value=0.0013 Score=58.89 Aligned_cols=164 Identities=18% Similarity=0.146 Sum_probs=101.8
Q ss_pred CHHHHHHHHHHcCCCcceEEE-ec--CCcccHHHHHHHHHhCCCcEEE-----ecCCC-H--------HHHHHHHHcCCC
Q 021156 94 SAAEFANLYKEDGLTGGHAIM-LG--ADPLSKAAAIEALHAYPGGLQV-----GGGIN-S--------DNSLSYIEEGAT 156 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvD-Ld--a~~~~~~~i~~~v~~~~~pl~v-----GGGIr-~--------e~~~~~l~~Gad 156 (316)
++. -|..-.+.|++++.+.. |. +..+....+..+.+..++|+.| +|... + +|++.+.++|++
T Consensus 9 s~~-~a~~A~~~GAdRiELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~Gad 87 (201)
T PF03932_consen 9 SLE-DALAAEAGGADRIELCSNLEVGGLTPSLGLIRQAREAVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGAD 87 (201)
T ss_dssp SHH-HHHHHHHTT-SEEEEEBTGGGT-B---HHHHHHHHHHTTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-S
T ss_pred CHH-HHHHHHHcCCCEEEECCCccCCCcCcCHHHHHHHHhhcCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCC
Confidence 454 44445678999999986 33 2246666676666778888877 77664 2 357777889999
Q ss_pred EEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC
Q 021156 157 HVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD 236 (316)
Q Consensus 157 ~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~ 236 (316)
-+|+|..... +++|.+.++++.+..++-.+ +..+.+... .++.+....+.++|+++|+ |+=.
T Consensus 88 G~VfG~L~~d-g~iD~~~~~~Li~~a~~~~~--------------tFHRAfD~~--~d~~~al~~L~~lG~~rVL-TSGg 149 (201)
T PF03932_consen 88 GFVFGALTED-GEIDEEALEELIEAAGGMPV--------------TFHRAFDEV--PDPEEALEQLIELGFDRVL-TSGG 149 (201)
T ss_dssp EEEE--BETT-SSB-HHHHHHHHHHHTTSEE--------------EE-GGGGGS--STHHHHHHHHHHHT-SEEE-ESTT
T ss_pred eeEEEeECCC-CCcCHHHHHHHHHhcCCCeE--------------EEeCcHHHh--CCHHHHHHHHHhcCCCEEE-CCCC
Confidence 9999997654 68999999999987752222 222233322 2577888899999999987 4423
Q ss_pred CccccCCCCHHHHHHHhhc--CCCcEEEEeCCCCHHHHHHHHH-hC
Q 021156 237 VEGKKLGIDDELVALLGKY--SPIPVTYAGGVTTMADLEKIKV-AG 279 (316)
Q Consensus 237 ~dG~~~G~d~eli~~l~~~--~~iPVIasGGI~s~eDi~~l~~-~G 279 (316)
...... +.+.++++.+. .++.|+++|||+. +.+..+.+ .|
T Consensus 150 ~~~a~~--g~~~L~~lv~~a~~~i~Im~GgGv~~-~nv~~l~~~tg 192 (201)
T PF03932_consen 150 APTALE--GIENLKELVEQAKGRIEIMPGGGVRA-ENVPELVEETG 192 (201)
T ss_dssp SSSTTT--CHHHHHHHHHHHTTSSEEEEESS--T-TTHHHHHHHHT
T ss_pred CCCHHH--HHHHHHHHHHHcCCCcEEEecCCCCH-HHHHHHHHhhC
Confidence 322223 56778887553 4688999999987 56777776 55
No 179
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=97.87 E-value=0.00054 Score=62.24 Aligned_cols=188 Identities=17% Similarity=0.067 Sum_probs=102.7
Q ss_pred ccCHHHHHHHHHHcCCCcceEEE--ecCCc----ccHHHHHHHHH--hCCCcEEEecCCC--HHHHHHHHHcCCCEE--E
Q 021156 92 DKSAAEFANLYKEDGLTGGHAIM--LGADP----LSKAAAIEALH--AYPGGLQVGGGIN--SDNSLSYIEEGATHV--I 159 (316)
Q Consensus 92 ~~~p~e~a~~~~~~G~~~l~lvD--Lda~~----~~~~~i~~~v~--~~~~pl~vGGGIr--~e~~~~~l~~Gad~V--V 159 (316)
..+|.++++.+.+.|++.+.+-- +.... .....+.+... .++.| .--+. ..+++++++.||+-| +
T Consensus 20 ~~d~~~~~~~~~~~g~~av~v~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~p---~~~~~~~~~~v~~a~~~Ga~~v~~~ 96 (235)
T cd00958 20 LEDPEETVKLAAEGGADAVALTKGIARAYGREYAGDIPLIVKLNGSTSLSPK---DDNDKVLVASVEDAVRLGADAVGVT 96 (235)
T ss_pred ccCHHHHHHHHHhcCCCEEEeChHHHHhcccccCCCCcEEEEECCCCCCCCC---CCCchhhhcCHHHHHHCCCCEEEEE
Confidence 35899999999999988655430 00000 00000000000 01111 11122 255999999999976 4
Q ss_pred eCCeeecCCCCCHHHHHHHH---HHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC
Q 021156 160 VTSYVFNNGQMDLERLKDLV---RVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD 236 (316)
Q Consensus 160 igt~~~~~~~~~~eli~ei~---~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~ 236 (316)
+.--.....+ ..+.+.++. +.+| -.+++.... +|. .+ .. ..+.-.....++.+.+.|++.+-+..
T Consensus 97 ~~~~~~~~~~-~~~~i~~v~~~~~~~g-~~~iie~~~---~g~-~~--~~--~~~~~~i~~~~~~a~~~GaD~Ik~~~-- 164 (235)
T cd00958 97 VYVGSEEERE-MLEELARVAAEAHKYG-LPLIAWMYP---RGP-AV--KN--EKDPDLIAYAARIGAELGADIVKTKY-- 164 (235)
T ss_pred EecCCchHHH-HHHHHHHHHHHHHHcC-CCEEEEEec---cCC-cc--cC--ccCHHHHHHHHHHHHHHCCCEEEecC--
Confidence 4222111100 022344443 3454 234443322 121 00 00 11111122236778899999765421
Q ss_pred CccccCCCCHHHHHHHhhcCCCcEEEEeCC--CCHHH----HHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156 237 VEGKKLGIDDELVALLGKYSPIPVTYAGGV--TTMAD----LEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA 305 (316)
Q Consensus 237 ~dG~~~G~d~eli~~l~~~~~iPVIasGGI--~s~eD----i~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~ 305 (316)
..|++.++++.+.+++||+++||+ .+.+| +.++.+.| ++|+.+|+++ +..+ ++.+..+
T Consensus 165 ------~~~~~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~G--a~gv~vg~~i--~~~~-dp~~~~~ 228 (235)
T cd00958 165 ------TGDAESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAMEAG--AAGVAVGRNI--FQRP-DPVAMLR 228 (235)
T ss_pred ------CCCHHHHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHHHcC--CcEEEechhh--hcCC-CHHHHHH
Confidence 127889999998889999999997 56665 88889888 9999999999 6544 4455444
No 180
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=97.86 E-value=0.0013 Score=59.76 Aligned_cols=191 Identities=20% Similarity=0.234 Sum_probs=119.4
Q ss_pred HHHHHHHHHcCCCcceEEEecCCc-------ccHHHHHHHH----HhCCCcEEEecCCC-H-HH----HHHHHHcCCCEE
Q 021156 96 AEFANLYKEDGLTGGHAIMLGADP-------LSKAAAIEAL----HAYPGGLQVGGGIN-S-DN----SLSYIEEGATHV 158 (316)
Q Consensus 96 ~e~a~~~~~~G~~~l~lvDLda~~-------~~~~~i~~~v----~~~~~pl~vGGGIr-~-e~----~~~~l~~Gad~V 158 (316)
+.=|+.|++.|++.+.+=.-.-.+ .....|-.++ +.+.+|+ ||+ . .| +.-+...||+.|
T Consensus 37 ~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPv----GvNVLrNd~vaA~~IA~a~gA~FI 112 (263)
T COG0434 37 VRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVSIPV----GVNVLRNDAVAALAIAYAVGADFI 112 (263)
T ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhccccc----eeeeeccccHHHHHHHHhcCCCEE
Confidence 345677888899988776654221 2222333333 3455554 554 2 23 333345689976
Q ss_pred EeCCee---ecC-CCC--CHHHHHHHHHHhcCce--EEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH-HHHcCCCE
Q 021156 159 IVTSYV---FNN-GQM--DLERLKDLVRVVGKQR--LVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD-FLASYADE 229 (316)
Q Consensus 159 Vigt~~---~~~-~~~--~~eli~ei~~~~G~~~--IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~-~~~~Ga~~ 229 (316)
=++..+ ..| |-+ +...+.+...+.| .+ +.+.+++| ++. -....++.+.++. .+..+++.
T Consensus 113 RVN~~tg~~~tdqGiieg~A~e~~r~r~~L~-~~v~vlADv~VK--Ha~---------~l~~~~~~~~v~dtver~~aDa 180 (263)
T COG0434 113 RVNVLTGAYATDQGIIEGNAAELARYRARLG-SRVKVLADVHVK--HAV---------HLGNRSLEEAVKDTVERGLADA 180 (263)
T ss_pred EEEeeeceEecccceecchHHHHHHHHHhcc-CCcEEEeecchh--ccc---------ccCCcCHHHHHHHHHHccCCCE
Confidence 654322 222 322 2334455556665 44 44445554 442 0112257777877 44455999
Q ss_pred EEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc-C----cccHHHHH
Q 021156 230 FLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG-G----NLAYKDVV 304 (316)
Q Consensus 230 ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~-g----~~~~~~~~ 304 (316)
+++|.-. |...+|.+.++..++.++.||+++-|+. ++.+.++++. ++|+|||+.+ =+ | +++.+.+.
T Consensus 181 VI~tG~~---TG~~~d~~el~~a~~~~~~pvlvGSGv~-~eN~~~~l~~---adG~IvgT~l--K~~G~~~n~VD~~Rv~ 251 (263)
T COG0434 181 VIVTGSR---TGSPPDLEELKLAKEAVDTPVLVGSGVN-PENIEELLKI---ADGVIVGTSL--KKGGVTWNPVDLERVR 251 (263)
T ss_pred EEEeccc---CCCCCCHHHHHHHHhccCCCEEEecCCC-HHHHHHHHHH---cCceEEEEEE--ccCCEecCccCHHHHH
Confidence 9988753 5567899999999999999999999975 5778888887 6999999998 33 3 56777777
Q ss_pred HHHHhhc
Q 021156 305 AWHAQQE 311 (316)
Q Consensus 305 ~~~~~~~ 311 (316)
++.+..+
T Consensus 252 ~~v~~a~ 258 (263)
T COG0434 252 RFVEAAR 258 (263)
T ss_pred HHHHHHH
Confidence 7766544
No 181
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=97.86 E-value=0.00011 Score=71.13 Aligned_cols=72 Identities=21% Similarity=0.231 Sum_probs=58.9
Q ss_pred HHHHHHHHHcCCCEEEE--eecCCccccCCC-CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccc
Q 021156 216 DERVLDFLASYADEFLV--HGVDVEGKKLGI-DDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA 290 (316)
Q Consensus 216 ~e~a~~~~~~Ga~~ilv--tdi~~dG~~~G~-d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~A 290 (316)
.+.++.+.+.|++.|++ |.- +. ...++ .++.+.++++.+ ++|||++|||++-.|+.+++.+| +++|++|++
T Consensus 232 ~~dA~~a~~~G~d~I~vsnhGG-r~-ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalG--A~~V~iGr~ 307 (351)
T cd04737 232 PEDADVAINAGADGIWVSNHGG-RQ-LDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASG--ADAVAVGRP 307 (351)
T ss_pred HHHHHHHHHcCCCEEEEeCCCC-cc-CCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcC--CCEEEECHH
Confidence 47889999999999988 431 11 11344 678888887766 69999999999999999999998 999999998
Q ss_pred h
Q 021156 291 L 291 (316)
Q Consensus 291 l 291 (316)
+
T Consensus 308 ~ 308 (351)
T cd04737 308 V 308 (351)
T ss_pred H
Confidence 8
No 182
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=97.85 E-value=0.00013 Score=70.18 Aligned_cols=89 Identities=19% Similarity=0.228 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHcCCCEEEEeec--CC-----------ccccCCC-----CHHHHHHHhhcC--CCcEEEEeCCCCHHHHH
Q 021156 214 YLDERVLDFLASYADEFLVHGV--DV-----------EGKKLGI-----DDELVALLGKYS--PIPVTYAGGVTTMADLE 273 (316)
Q Consensus 214 ~~~e~a~~~~~~Ga~~ilvtdi--~~-----------dG~~~G~-----d~eli~~l~~~~--~iPVIasGGI~s~eDi~ 273 (316)
++.++++.+.+.|++.+++++. ++ -|-++|+ -+++++.+.+.+ ++|+|+.|||.+.+|+.
T Consensus 225 ~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~ 304 (335)
T TIGR01036 225 DLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDAL 304 (335)
T ss_pred HHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHH
Confidence 4778999999999999876442 11 2333444 234666776655 68999999999999999
Q ss_pred HHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156 274 KIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA 305 (316)
Q Consensus 274 ~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~ 305 (316)
+.+.+| ++.|.+|+|+ .+.|+-.++++.+
T Consensus 305 e~l~aG--A~~Vqv~ta~-~~~Gp~~~~~i~~ 333 (335)
T TIGR01036 305 EKIRAG--ASLLQIYSGF-IYWGPPLVKEIVK 333 (335)
T ss_pred HHHHcC--CcHHHhhHHH-HHhCchHHHHHHh
Confidence 999998 8999999998 2337766666543
No 183
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=97.83 E-value=0.0001 Score=70.98 Aligned_cols=74 Identities=23% Similarity=0.311 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCCEEEEeecCCccccCC----CC-HHHHHHHhhcCC-CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEcc
Q 021156 216 DERVLDFLASYADEFLVHGVDVEGKKLG----ID-DELVALLGKYSP-IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGS 289 (316)
Q Consensus 216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G----~d-~eli~~l~~~~~-iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~ 289 (316)
..+++.+++.|++.++...-+.-|+..+ +. +.++.++.+.++ +|||++|||.+-+++..++.+| +++|-+|+
T Consensus 137 ~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalG--A~gVq~GT 214 (336)
T COG2070 137 VREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALALG--ADGVQMGT 214 (336)
T ss_pred HHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhc--cHHHHhhh
Confidence 3689999999999999988877666442 22 458999999988 9999999999999999999999 99999999
Q ss_pred ch
Q 021156 290 AL 291 (316)
Q Consensus 290 Al 291 (316)
++
T Consensus 215 ~F 216 (336)
T COG2070 215 RF 216 (336)
T ss_pred hh
Confidence 88
No 184
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=97.83 E-value=0.00048 Score=65.55 Aligned_cols=154 Identities=16% Similarity=0.043 Sum_probs=91.8
Q ss_pred CCcEEEe-cCCCHHH----HHHHHHcC-CCEEEeCCeeecC--C-C--CCHHHHHHHHHHhcCceEEEeeeeeecCCeeE
Q 021156 133 PGGLQVG-GGINSDN----SLSYIEEG-ATHVIVTSYVFNN--G-Q--MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYA 201 (316)
Q Consensus 133 ~~pl~vG-GGIr~e~----~~~~l~~G-ad~VVigt~~~~~--~-~--~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~ 201 (316)
+.|+++. -|.+.++ ++.+-++| ||.+-++...-+- + . .+++.+.++.+.. ++.+-+.+-+|
T Consensus 92 ~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v-~~~~~~Pv~vK------- 163 (310)
T PRK02506 92 NKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEV-FTYFTKPLGVK------- 163 (310)
T ss_pred CCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHH-HHhcCCccEEe-------
Confidence 4788766 5665333 44444577 9998887654311 1 1 1478888888776 33332333333
Q ss_pred EEeCCcceecccCHHHHHHHH---HHcCCCEEEEe---------ecCCc----------cccCCC-----CHHHHHHHhh
Q 021156 202 IVTDRWQKFSDVYLDERVLDF---LASYADEFLVH---------GVDVE----------GKKLGI-----DDELVALLGK 254 (316)
Q Consensus 202 v~~~gw~~~~~~~~~e~a~~~---~~~Ga~~ilvt---------di~~d----------G~~~G~-----d~eli~~l~~ 254 (316)
+.- ..+..++++.+ ...|++.+..+ |++.. |-++|+ -+.++.++.+
T Consensus 164 --lsp-----~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~ 236 (310)
T PRK02506 164 --LPP-----YFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQ 236 (310)
T ss_pred --cCC-----CCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHH
Confidence 111 11233444333 34455554321 22111 222444 2345666666
Q ss_pred cC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc-CcccHHHHHH
Q 021156 255 YS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG-GNLAYKDVVA 305 (316)
Q Consensus 255 ~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~-g~~~~~~~~~ 305 (316)
.+ ++|||++|||.+.+|+.+.+.+| ++.|.+++++ +. |+-.+.++.+
T Consensus 237 ~~~~~ipIig~GGI~s~~da~e~i~aG--A~~Vqv~ta~--~~~gp~~~~~i~~ 286 (310)
T PRK02506 237 RLNPSIQIIGTGGVKTGRDAFEHILCG--ASMVQVGTAL--HKEGPAVFERLTK 286 (310)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHcC--CCHHhhhHHH--HHhChHHHHHHHH
Confidence 65 69999999999999999999999 8999999998 54 7765666544
No 185
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.82 E-value=0.0011 Score=57.59 Aligned_cols=169 Identities=18% Similarity=0.063 Sum_probs=100.2
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHH-HhC---CCcEEEecCCC--------H-HHHHHHHHcCCCEEEe
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEAL-HAY---PGGLQVGGGIN--------S-DNSLSYIEEGATHVIV 160 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v-~~~---~~pl~vGGGIr--------~-e~~~~~l~~Gad~VVi 160 (316)
.+.++++.+.+.|++++.+- + .+++.+ +.. .+|+.+|-|-. . +.++.+.++|||.+.+
T Consensus 14 ~~~~~~~~~~~~gv~gi~~~---g------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v 84 (201)
T cd00945 14 DIAKLCDEAIEYGFAAVCVN---P------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDV 84 (201)
T ss_pred HHHHHHHHHHHhCCcEEEEC---H------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 46677787878887754332 1 333333 322 47877665542 2 6789999999999988
Q ss_pred CCeeecCCC----CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC
Q 021156 161 TSYVFNNGQ----MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD 236 (316)
Q Consensus 161 gt~~~~~~~----~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~ 236 (316)
-......+. ...+.++++.+.. +..+-+.+... .++. .+.....+.++.+.+.|++.+=.+.-.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~~----------p~~~-~~~~~~~~~~~~~~~~g~~~iK~~~~~ 152 (201)
T cd00945 85 VINIGSLKEGDWEEVLEEIAAVVEAA-DGGLPLKVILE----------TRGL-KTADEIAKAARIAAEAGADFIKTSTGF 152 (201)
T ss_pred eccHHHHhCCCHHHHHHHHHHHHHHh-cCCceEEEEEE----------CCCC-CCHHHHHHHHHHHHHhCCCEEEeCCCC
Confidence 544332100 0024444555443 11222333221 1111 011123344455667888876432211
Q ss_pred CccccCCCCHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEc
Q 021156 237 VEGKKLGIDDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVG 288 (316)
Q Consensus 237 ~dG~~~G~d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG 288 (316)
...+.|++.++++.+.. ++|+++.||+.+.+.+..++..| ++|+++|
T Consensus 153 ---~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~G--a~g~~~g 201 (201)
T cd00945 153 ---GGGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAG--ADGIGTS 201 (201)
T ss_pred ---CCCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhc--cceeecC
Confidence 11345899999988765 67999999999999999999998 8888875
No 186
>PRK14057 epimerase; Provisional
Probab=97.82 E-value=0.0046 Score=57.17 Aligned_cols=183 Identities=11% Similarity=0.010 Sum_probs=115.9
Q ss_pred HHHHHHHHcCCCcceEEEecCCc-cc---HHHHHHHHHhCCCcEEEecCC-CHH-HHHHHHHcCCCEEEeCCeeecCCCC
Q 021156 97 EFANLYKEDGLTGGHAIMLGADP-LS---KAAAIEALHAYPGGLQVGGGI-NSD-NSLSYIEEGATHVIVTSYVFNNGQM 170 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvDLda~~-~~---~~~i~~~v~~~~~pl~vGGGI-r~e-~~~~~l~~Gad~VVigt~~~~~~~~ 170 (316)
+..+.+++.|++++|+==+|+.. +| -+.+++.++. ..|+.|===+ +.+ -++.+.++|||.|.+-.++..+
T Consensus 36 ~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~-~~p~DvHLMV~~P~~~i~~~~~aGad~It~H~Ea~~~--- 111 (254)
T PRK14057 36 RYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQLPQ-TFIKDVHLMVADQWTAAQACVKAGAHCITLQAEGDIH--- 111 (254)
T ss_pred HHHHHHHHCCCCEEEEeccCCccCCccccCHHHHHHhcc-CCCeeEEeeeCCHHHHHHHHHHhCCCEEEEeeccccC---
Confidence 55666777899999997788763 22 2334555554 3443222222 454 4889999999999998886555
Q ss_pred CHHHHHHHHHHhcCc------eEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC
Q 021156 171 DLERLKDLVRVVGKQ------RLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI 244 (316)
Q Consensus 171 ~~eli~ei~~~~G~~------~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~ 244 (316)
+...-+..+..|.. .+.+.+-++ - . .+.+.++.+.+. ++.+++..++-.-..+.+
T Consensus 112 -~~~~l~~Ir~~G~k~~~~~~~~kaGlAln--P------------~---Tp~e~i~~~l~~-vD~VLvMtV~PGfgGQ~F 172 (254)
T PRK14057 112 -LHHTLSWLGQQTVPVIGGEMPVIRGISLC--P------------A---TPLDVIIPILSD-VEVIQLLAVNPGYGSKMR 172 (254)
T ss_pred -HHHHHHHHHHcCCCcccccccceeEEEEC--C------------C---CCHHHHHHHHHh-CCEEEEEEECCCCCchhc
Confidence 54444444555521 011222221 0 1 245566666664 999999998776556666
Q ss_pred CHHHHHHHh---hc-----CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156 245 DDELVALLG---KY-----SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA 308 (316)
Q Consensus 245 d~eli~~l~---~~-----~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~ 308 (316)
..+.+++++ +. .++.+.+=|||+. +.+.++.++| ++-++.|+++ |.. -++++..+..+
T Consensus 173 i~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~-~ti~~l~~aG--ad~~V~GSal--F~~-~d~~~~i~~l~ 238 (254)
T PRK14057 173 SSDLHERVAQLLCLLGDKREGKIIVIDGSLTQ-DQLPSLIAQG--IDRVVSGSAL--FRD-DRLVENTRSWR 238 (254)
T ss_pred cHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHCC--CCEEEEChHh--hCC-CCHHHHHHHHH
Confidence 655554443 22 2466899999876 5899999998 8999999999 753 24566555444
No 187
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=97.81 E-value=0.0073 Score=55.13 Aligned_cols=180 Identities=15% Similarity=0.101 Sum_probs=113.8
Q ss_pred HHHHHHHcCCCcceEEEecCCc-cc---HHHHHHHHHh-CCCcEEEecCC-CHH-HHHHHHHcCCCEEEeCCeee-cCCC
Q 021156 98 FANLYKEDGLTGGHAIMLGADP-LS---KAAAIEALHA-YPGGLQVGGGI-NSD-NSLSYIEEGATHVIVTSYVF-NNGQ 169 (316)
Q Consensus 98 ~a~~~~~~G~~~l~lvDLda~~-~~---~~~i~~~v~~-~~~pl~vGGGI-r~e-~~~~~l~~Gad~VVigt~~~-~~~~ 169 (316)
-++.+.. |++++|+==+|+.. +| -+.+++.+++ .+.|+.|===+ +.+ -++.+.++||+.+.+-.+.. .+
T Consensus 20 el~~l~~-g~d~lH~DiMDG~FVPN~tfg~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aGad~it~H~Ea~~~~-- 96 (229)
T PRK09722 20 QIEFLNS-KADYFHIDIMDGHFVPNLTLSPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITLHPETINGQ-- 96 (229)
T ss_pred HHHHHHh-CCCEEEEecccCccCCCcccCHHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcCCCEEEECccCCcch--
Confidence 3444444 89999987788763 22 2335566654 45554333223 354 48999999999999988864 33
Q ss_pred CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHH
Q 021156 170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELV 249 (316)
Q Consensus 170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli 249 (316)
+..+-+..+..| -+.-+++... .+.+....+.+. ++.+++..++-....+.+..+.+
T Consensus 97 --~~~~i~~Ik~~G-~kaGlalnP~-------------------T~~~~l~~~l~~-vD~VLvMsV~PGf~GQ~fi~~~l 153 (229)
T PRK09722 97 --AFRLIDEIRRAG-MKVGLVLNPE-------------------TPVESIKYYIHL-LDKITVMTVDPGFAGQPFIPEML 153 (229)
T ss_pred --HHHHHHHHHHcC-CCEEEEeCCC-------------------CCHHHHHHHHHh-cCEEEEEEEcCCCcchhccHHHH
Confidence 544434445565 3444444331 234555556553 89999999887545566666555
Q ss_pred HHHhh---c-----CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEcc-chhhccCcccHHHHHHHHH
Q 021156 250 ALLGK---Y-----SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGS-ALDIFGGNLAYKDVVAWHA 308 (316)
Q Consensus 250 ~~l~~---~-----~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~-Al~~~~g~~~~~~~~~~~~ 308 (316)
+++++ . .++.+.+=|||+ .+.+.++.++| ++.+++|+ ++ |...-++++.++.++
T Consensus 154 ~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aG--ad~~V~Gss~i--F~~~~d~~~~i~~l~ 216 (229)
T PRK09722 154 DKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAG--ADVFIVGTSGL--FNLDEDIDEAWDIMT 216 (229)
T ss_pred HHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcC--CCEEEEChHHH--cCCCCCHHHHHHHHH
Confidence 55432 1 235689999998 57899999998 89999996 48 752224555554443
No 188
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.80 E-value=0.0028 Score=56.83 Aligned_cols=171 Identities=18% Similarity=0.234 Sum_probs=112.5
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEEEecCC-C-HHHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQVGGGI-N-SDNSLSYIEEGATHVIVTSYVFNNGQM 170 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~vGGGI-r-~e~~~~~l~~Gad~VVigt~~~~~~~~ 170 (316)
+..++++.+.+.|++-+-+.. ..++....++.++ +.+ .+.+|.|- . .++++.+.++||+.+|--+. +
T Consensus 21 ~a~~~~~al~~~Gi~~iEit~---~t~~a~~~i~~l~~~~~-~~~vGAGTVl~~~~a~~a~~aGA~FivsP~~---~--- 90 (204)
T TIGR01182 21 DALPLAKALIEGGLRVLEVTL---RTPVALDAIRLLRKEVP-DALIGAGTVLNPEQLRQAVDAGAQFIVSPGL---T--- 90 (204)
T ss_pred HHHHHHHHHHHcCCCEEEEeC---CCccHHHHHHHHHHHCC-CCEEEEEeCCCHHHHHHHHHcCCCEEECCCC---C---
Confidence 556788888888876444433 2234444455554 454 47777776 4 59999999999999854332 2
Q ss_pred CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHH
Q 021156 171 DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVA 250 (316)
Q Consensus 171 ~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~ 250 (316)
++.++.. +++| ++.+- | - .++ ..+..+.+.|++.+=+...+. +.|+ ..++
T Consensus 91 -~~v~~~~-~~~~----i~~iP-----G--------~-----~Tp-tEi~~A~~~Ga~~vKlFPA~~---~GG~--~yik 140 (204)
T TIGR01182 91 -PELAKHA-QDHG----IPIIP-----G--------V-----ATP-SEIMLALELGITALKLFPAEV---SGGV--KMLK 140 (204)
T ss_pred -HHHHHHH-HHcC----CcEEC-----C--------C-----CCH-HHHHHHHHCCCCEEEECCchh---cCCH--HHHH
Confidence 6666554 4554 22221 1 1 123 456677789999886666432 2234 4677
Q ss_pred HHhh-cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcc----cHHHHHHHHHh
Q 021156 251 LLGK-YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNL----AYKDVVAWHAQ 309 (316)
Q Consensus 251 ~l~~-~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~----~~~~~~~~~~~ 309 (316)
.++. ..++|++..|||.. +.+.+.++.| +.+|.+|+.+ +.... .++++.+.+++
T Consensus 141 al~~plp~i~~~ptGGV~~-~N~~~~l~aG--a~~vg~Gs~L--~~~~~~~~~~~~~i~~~a~~ 199 (204)
T TIGR01182 141 ALAGPFPQVRFCPTGGINL-ANVRDYLAAP--NVACGGGSWL--VPKDLIAAGDWDEITRLARE 199 (204)
T ss_pred HHhccCCCCcEEecCCCCH-HHHHHHHhCC--CEEEEEChhh--cCchhhccccHHHHHHHHHH
Confidence 7765 35799999999987 8999999999 8999999999 75432 45566555444
No 189
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=97.77 E-value=0.0011 Score=64.85 Aligned_cols=158 Identities=16% Similarity=0.142 Sum_probs=98.5
Q ss_pred hC-CCcEEEec--CCCHHH----HHHHHHcCCCEEEeCCeeecC------C---CCCHHHHHHHHHHhcCceEEEeeeee
Q 021156 131 AY-PGGLQVGG--GINSDN----SLSYIEEGATHVIVTSYVFNN------G---QMDLERLKDLVRVVGKQRLVLDLSCR 194 (316)
Q Consensus 131 ~~-~~pl~vGG--GIr~e~----~~~~l~~Gad~VVigt~~~~~------~---~~~~eli~ei~~~~G~~~IvvslD~k 194 (316)
+. ..|+++-= +-..++ ++++-++|||.+-++-..-+. | ..+|+.+.++.+.. ++..-+.+-+|
T Consensus 110 ~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~V-k~~~~iPv~vK 188 (385)
T PLN02495 110 EYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWI-NAKATVPVWAK 188 (385)
T ss_pred hCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHH-HHhhcCceEEE
Confidence 44 46877654 444333 455557899999886543221 0 12589998887776 33332333333
Q ss_pred ecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEee-------cCCc--------------cccCCCCHH-----H
Q 021156 195 KKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHG-------VDVE--------------GKKLGIDDE-----L 248 (316)
Q Consensus 195 ~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd-------i~~d--------------G~~~G~d~e-----l 248 (316)
..-.. + ++.+.++.+.+.|++.+++++ +|-+ |-+.|+-+. .
T Consensus 189 ---------LsPn~--t--~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~ 255 (385)
T PLN02495 189 ---------MTPNI--T--DITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAK 255 (385)
T ss_pred ---------eCCCh--h--hHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHH
Confidence 22111 1 477889999999999886432 2111 112333222 2
Q ss_pred HHHHhhcC------CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156 249 VALLGKYS------PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA 305 (316)
Q Consensus 249 i~~l~~~~------~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~ 305 (316)
+.++++.+ ++|++..|||.+.+|+.+.+.+| ++.|-|++|+ .+.|+-.++++.+
T Consensus 256 v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aG--As~VQv~Ta~-~~~Gp~vi~~i~~ 315 (385)
T PLN02495 256 VMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLG--ADTVQVCTGV-MMHGYPLVKNLCA 315 (385)
T ss_pred HHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhC--CCceeEeeee-eecCcHHHHHHHH
Confidence 33344433 48999999999999999999999 8999999998 2455766666544
No 190
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=97.75 E-value=0.0021 Score=58.60 Aligned_cols=185 Identities=15% Similarity=0.157 Sum_probs=109.1
Q ss_pred cCHH---HHHHHHHHcCCCcceEEEecCCc-cc---HHHHHHHHHh-C-CCcEEEecCCC-H-HHHHHHHHcCCCEEEeC
Q 021156 93 KSAA---EFANLYKEDGLTGGHAIMLGADP-LS---KAAAIEALHA-Y-PGGLQVGGGIN-S-DNSLSYIEEGATHVIVT 161 (316)
Q Consensus 93 ~~p~---e~a~~~~~~G~~~l~lvDLda~~-~~---~~~i~~~v~~-~-~~pl~vGGGIr-~-e~~~~~l~~Gad~VVig 161 (316)
.||. +.++.+.+.|++++|+==.|+.. +| -..+++.+++ . ++|+-+===+. . .-++.+.++|||.+.+-
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~itvH 95 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFTFH 95 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEEEe
Confidence 3555 44555666789999987778753 22 2334555553 3 56654444454 4 45889999999999886
Q ss_pred CeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcC-CCEEEEeecC--Cc
Q 021156 162 SYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASY-ADEFLVHGVD--VE 238 (316)
Q Consensus 162 t~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~G-a~~ilvtdi~--~d 238 (316)
.+.-.. .+...-+..+.+| -+ +.+.+. . .. ..+.++.+.+.. ++.+++..++ .+
T Consensus 96 ~ea~~~---~~~~~l~~ik~~G-~~--~gval~--p--------------~t-~~e~l~~~l~~~~vD~Vl~m~v~pG~~ 152 (228)
T PTZ00170 96 IEATED---DPKAVARKIREAG-MK--VGVAIK--P--------------KT-PVEVLFPLIDTDLVDMVLVMTVEPGFG 152 (228)
T ss_pred ccCCch---HHHHHHHHHHHCC-Ce--EEEEEC--C--------------CC-CHHHHHHHHccchhhhHHhhhcccCCC
Confidence 554221 0223333334455 23 344432 0 11 234444444323 6766665555 33
Q ss_pred cccCCC-CHHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHH
Q 021156 239 GKKLGI-DDELVALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAW 306 (316)
Q Consensus 239 G~~~G~-d~eli~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~ 306 (316)
|....+ .++.++++++.. ...+.+.|||+. +.+..+.+.| ++.+++||++ +... ++++..+.
T Consensus 153 gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~~-~ti~~~~~aG--ad~iVvGsaI--~~a~-d~~~~~~~ 216 (228)
T PTZ00170 153 GQSFMHDMMPKVRELRKRYPHLNIQVDGGINL-ETIDIAADAG--ANVIVAGSSI--FKAK-DRKQAIEL 216 (228)
T ss_pred CcEecHHHHHHHHHHHHhcccCeEEECCCCCH-HHHHHHHHcC--CCEEEEchHH--hCCC-CHHHHHHH
Confidence 333222 355666666543 467899999987 6899999998 8999999999 7543 45554443
No 191
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=97.73 E-value=0.0093 Score=53.82 Aligned_cols=183 Identities=17% Similarity=0.171 Sum_probs=120.7
Q ss_pred HHHHHHHHHHcCCCcceEEEecCCc-cc---HHHHHHHHHh-CCCcEEEecCCC-H-HHHHHHHHcCCCEEEeCCeeecC
Q 021156 95 AAEFANLYKEDGLTGGHAIMLGADP-LS---KAAAIEALHA-YPGGLQVGGGIN-S-DNSLSYIEEGATHVIVTSYVFNN 167 (316)
Q Consensus 95 p~e~a~~~~~~G~~~l~lvDLda~~-~~---~~~i~~~v~~-~~~pl~vGGGIr-~-e~~~~~l~~Gad~VVigt~~~~~ 167 (316)
..+..+.+.++|++++|+==+|+.. +| -+.+.+.++. ...|+-|===+. . .-++.+.++||+++.+-.+.-.+
T Consensus 18 l~~el~~~~~agad~iH~DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E~~~~ 97 (220)
T COG0036 18 LGEELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAEATEH 97 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeccCCCcCCCcccCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEEeccCcC
Confidence 4466777788899999998888863 22 2345566654 456666555554 4 44899999999999998885554
Q ss_pred CCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHH
Q 021156 168 GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDE 247 (316)
Q Consensus 168 ~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~e 247 (316)
+..+-+..+..| +-+.+-.+ -+ .+++..+.+.+. ++.+++..+.-.-..+-+--+
T Consensus 98 ----~~r~i~~Ik~~G---~kaGv~ln--P~---------------Tp~~~i~~~l~~-vD~VllMsVnPGfgGQ~Fi~~ 152 (220)
T COG0036 98 ----IHRTIQLIKELG---VKAGLVLN--PA---------------TPLEALEPVLDD-VDLVLLMSVNPGFGGQKFIPE 152 (220)
T ss_pred ----HHHHHHHHHHcC---CeEEEEEC--CC---------------CCHHHHHHHHhh-CCEEEEEeECCCCcccccCHH
Confidence 444444445555 23334332 11 245566666554 899999998876555666544
Q ss_pred HHHHH---hhcC----CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156 248 LVALL---GKYS----PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA 308 (316)
Q Consensus 248 li~~l---~~~~----~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~ 308 (316)
.++++ ++.. ++-+.+=|||.. +.+..+.++| ++-++.||++ |++.. .++.++..+
T Consensus 153 ~l~Ki~~lr~~~~~~~~~~IeVDGGI~~-~t~~~~~~AG--ad~~VaGSal--F~~~d-~~~~i~~~~ 214 (220)
T COG0036 153 VLEKIRELRAMIDERLDILIEVDGGINL-ETIKQLAAAG--ADVFVAGSAL--FGADD-YKATIRELR 214 (220)
T ss_pred HHHHHHHHHHHhcccCCeEEEEeCCcCH-HHHHHHHHcC--CCEEEEEEEE--eCCcc-HHHHHHHHH
Confidence 44444 4332 345788899865 7899999998 8889999999 88765 444444433
No 192
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=97.72 E-value=0.0004 Score=67.37 Aligned_cols=72 Identities=21% Similarity=0.167 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCCEEEEeecCCcccc-C--CCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 216 DERVLDFLASYADEFLVHGVDVEGKK-L--GIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~-~--G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
.+.++.+.+.|++.|++..-- |+. . ...++.+.++++.+++|||+.|||++-.|+.+++.+| ++.|++|+++
T Consensus 247 ~eda~~a~~~G~d~I~VSnhG--Grqld~~~~~~~~L~ei~~~~~~~vi~dGGIr~g~Dv~KALaLG--A~aV~iGr~~ 321 (361)
T cd04736 247 AEDAKRCIELGADGVILSNHG--GRQLDDAIAPIEALAEIVAATYKPVLIDSGIRRGSDIVKALALG--ANAVLLGRAT 321 (361)
T ss_pred HHHHHHHHHCCcCEEEECCCC--cCCCcCCccHHHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHHcC--CCEEEECHHH
Confidence 478899999999999874321 221 1 1357888888887889999999999999999999999 8999999998
No 193
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.71 E-value=0.0047 Score=55.63 Aligned_cols=170 Identities=15% Similarity=0.075 Sum_probs=111.5
Q ss_pred HHHHHHHHHcCCCcceEEEecCCcccH----HHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCC
Q 021156 96 AEFANLYKEDGLTGGHAIMLGADPLSK----AAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMD 171 (316)
Q Consensus 96 ~e~a~~~~~~G~~~l~lvDLda~~~~~----~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~ 171 (316)
.+.++...+.|+..+++=+-+...... ..+.+.+++.+.++++-. .++-+.+.|++.|=+|.....
T Consensus 22 ~~~l~~~l~~G~~~vqLR~k~~~~~~~~~la~~l~~~~~~~~~~liInd-----~~~lA~~~~adGVHlg~~d~~----- 91 (211)
T PRK03512 22 VQWIERLLDAGVRTLQLRIKDRRDEEVEADVVAAIALGRRYQARLFIND-----YWRLAIKHQAYGVHLGQEDLE----- 91 (211)
T ss_pred HHHHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeC-----HHHHHHHcCCCEEEcChHhCC-----
Confidence 356666777889888887665542211 223344456778888875 566677789998877754322
Q ss_pred HHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeec----CCccccCCCCHH
Q 021156 172 LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGV----DVEGKKLGIDDE 247 (316)
Q Consensus 172 ~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi----~~dG~~~G~d~e 247 (316)
+. +..+..|.. .++++.+. +. +.+.++.+.|++.+.+-.+ +..+......++
T Consensus 92 ~~---~~r~~~~~~-~~iG~S~H-------------------~~-~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~ 147 (211)
T PRK03512 92 TA---DLNAIRAAG-LRLGVSTH-------------------DD-MEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLA 147 (211)
T ss_pred HH---HHHHhcCCC-CEEEEeCC-------------------CH-HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHH
Confidence 22 333334433 34666552 12 3466777889999876444 333333445788
Q ss_pred HHHHHhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156 248 LVALLGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA 305 (316)
Q Consensus 248 li~~l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~ 305 (316)
.++++.+. .++||++-|||. .+++.++++.| ++|+.+-+++ +... ++++..+
T Consensus 148 ~l~~~~~~~~~~PV~AiGGI~-~~ni~~l~~~G--a~GiAvisai--~~~~-d~~~~~~ 200 (211)
T PRK03512 148 QLARHVERLADYPTVAIGGIS-LERAPAVLATG--VGSIAVVSAI--TQAA-DWRAATA 200 (211)
T ss_pred HHHHHHHhcCCCCEEEECCCC-HHHHHHHHHcC--CCEEEEhhHh--hCCC-CHHHHHH
Confidence 88888765 589999999998 68999999998 9999999999 6433 4444433
No 194
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=97.70 E-value=0.00061 Score=66.26 Aligned_cols=148 Identities=15% Similarity=0.012 Sum_probs=94.1
Q ss_pred HHHHHHHcCCCEEEeCCee--------------ecC---C------CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEE
Q 021156 146 NSLSYIEEGATHVIVTSYV--------------FNN---G------QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAI 202 (316)
Q Consensus 146 ~~~~~l~~Gad~VVigt~~--------------~~~---~------~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v 202 (316)
.++++.++|+|-|=|-.+- ++| | ++..|.++.+.+.+|++.|.+-+... +. .-
T Consensus 164 AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~---~~-~~ 239 (362)
T PRK10605 164 AIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPL---GT-FN 239 (362)
T ss_pred HHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCc---cc-cc
Confidence 3566678999999774221 111 1 34558888888888865332222210 10 00
Q ss_pred EeCCcceecccC-HHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCC
Q 021156 203 VTDRWQKFSDVY-LDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIG 281 (316)
Q Consensus 203 ~~~gw~~~~~~~-~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g 281 (316)
...++.. ..+ ..++++.+.+.|++.+=+..-+-.+ ..++..+..+++++.+++||+++|++ +++.++++++.| .
T Consensus 240 ~~~~G~~--~~e~~~~~~~~L~~~giD~i~vs~~~~~~-~~~~~~~~~~~ik~~~~~pv~~~G~~-~~~~ae~~i~~G-~ 314 (362)
T PRK10605 240 NVDNGPN--EEADALYLIEQLGKRGIAYLHMSEPDWAG-GEPYSDAFREKVRARFHGVIIGAGAY-TAEKAETLIGKG-L 314 (362)
T ss_pred cCCCCCC--HHHHHHHHHHHHHHcCCCEEEeccccccC-CccccHHHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHcC-C
Confidence 0112211 112 4678899999999876444321111 12335566678888889999999996 899999999998 5
Q ss_pred cCEEEEccchhhccCcccHHHHH
Q 021156 282 RVDVTVGSALDIFGGNLAYKDVV 304 (316)
Q Consensus 282 ~~gVivG~Al~~~~g~~~~~~~~ 304 (316)
++.|.+||++ ..+|-..+.++
T Consensus 315 ~D~V~~gR~~--iadPd~~~k~~ 335 (362)
T PRK10605 315 IDAVAFGRDY--IANPDLVARLQ 335 (362)
T ss_pred CCEEEECHHh--hhCccHHHHHh
Confidence 9999999999 98885555543
No 195
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=97.70 E-value=0.00094 Score=63.40 Aligned_cols=138 Identities=14% Similarity=0.148 Sum_probs=102.4
Q ss_pred HHHHHHHHcCCCEEE--eCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156 145 DNSLSYIEEGATHVI--VTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF 222 (316)
Q Consensus 145 e~~~~~l~~Gad~VV--igt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~ 222 (316)
+.++++.+.|.+.+= +|....++ .+.++.+.+.+| .+.+.+|+. .+|... +..++++.+
T Consensus 140 ~~~~~~~~~Gf~~iKik~g~~~~~d----~~~v~~lr~~~g--~~~l~vD~n----------~~~~~~---~A~~~~~~l 200 (316)
T cd03319 140 AAAKKAAKRGFPLLKIKLGGDLEDD----IERIRAIREAAP--DARLRVDAN----------QGWTPE---EAVELLREL 200 (316)
T ss_pred HHHHHHHHcCCCEEEEEeCCChhhH----HHHHHHHHHhCC--CCeEEEeCC----------CCcCHH---HHHHHHHHH
Confidence 346777888977543 34433333 788999999897 567889984 356532 467788888
Q ss_pred HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHH
Q 021156 223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKD 302 (316)
Q Consensus 223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~ 302 (316)
.+.++..+ +.-+...|++.++++++.+++||.+++.+.+.++++++++.+ +++.+.+--+. .+|--...+
T Consensus 201 ~~~~l~~i-------EeP~~~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~-~~d~v~~~~~~--~GGi~~~~~ 270 (316)
T cd03319 201 AELGVELI-------EQPVPAGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGG-AYDGINIKLMK--TGGLTEALR 270 (316)
T ss_pred HhcCCCEE-------ECCCCCCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcC-CCCEEEEeccc--cCCHHHHHH
Confidence 88887654 223344589999999999999999999999999999999987 57888887777 777666777
Q ss_pred HHHHHHhhc
Q 021156 303 VVAWHAQQE 311 (316)
Q Consensus 303 ~~~~~~~~~ 311 (316)
+.+++++..
T Consensus 271 ~~~~a~~~g 279 (316)
T cd03319 271 IADLARAAG 279 (316)
T ss_pred HHHHHHHcC
Confidence 777766644
No 196
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=97.70 E-value=4.1e-05 Score=69.64 Aligned_cols=75 Identities=19% Similarity=0.242 Sum_probs=52.5
Q ss_pred CCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156 226 YADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA 305 (316)
Q Consensus 226 Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~ 305 (316)
|.. ++|..- -.|+...+..+.++..++..++|+|++|||+|.++++++.+.| +|-|++|.++ |++.. ++++++
T Consensus 153 g~~-~iYLEa-GSGa~~~v~~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aG--AD~IVvGn~i--ee~~~-~e~~~~ 225 (230)
T PF01884_consen 153 GMP-IIYLEA-GSGAYGPVPEEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAG--ADTIVVGNAI--EEDPD-LEEALE 225 (230)
T ss_dssp T-S-EEEEE---TTSSS-HHHHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTT--SSEEEESCHH--HHHH--HHHHHT
T ss_pred CCC-EEEEEe-CCCCCCCccHHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCC--CCEEEECCEE--EEcch-HHHHHH
Confidence 444 445543 1577665555566555667899999999999999999999998 8999999999 87664 666655
Q ss_pred HH
Q 021156 306 WH 307 (316)
Q Consensus 306 ~~ 307 (316)
..
T Consensus 226 ~i 227 (230)
T PF01884_consen 226 TI 227 (230)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 197
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.68 E-value=0.00074 Score=62.69 Aligned_cols=133 Identities=20% Similarity=0.221 Sum_probs=86.0
Q ss_pred CCCcEEEecCCC------HHH-HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe
Q 021156 132 YPGGLQVGGGIN------SDN-SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT 204 (316)
Q Consensus 132 ~~~pl~vGGGIr------~e~-~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~ 204 (316)
.++|+.+=+=.+ .|. ++++-++|++-+++=-...+. .+.+.+..+.+|= ..+.-+.
T Consensus 86 ~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee----~~~~~~~~~~~gl-~~I~lv~------------ 148 (259)
T PF00290_consen 86 PDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEE----SEELREAAKKHGL-DLIPLVA------------ 148 (259)
T ss_dssp TSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGG----HHHHHHHHHHTT--EEEEEEE------------
T ss_pred CCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHH----HHHHHHHHHHcCC-eEEEEEC------------
Confidence 568887766544 123 555667899999887766664 6677777788871 1212121
Q ss_pred CCcceecccCHHHHHHHHHHcCCCEEEEeec-CCccccCCCC---HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCC
Q 021156 205 DRWQKFSDVYLDERVLDFLASYADEFLVHGV-DVEGKKLGID---DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGI 280 (316)
Q Consensus 205 ~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi-~~dG~~~G~d---~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~ 280 (316)
.....+.++...+..-+.+.+.+. ...|.....+ .+.++++++.++.|+.++=||++.+|++++. .+
T Consensus 149 -------p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~- 219 (259)
T PF00290_consen 149 -------PTTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AG- 219 (259)
T ss_dssp -------TTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TT-
T ss_pred -------CCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH-cc-
Confidence 113456677777665555433333 2223333332 2478888888999999999999999999999 66
Q ss_pred CcCEEEEccch
Q 021156 281 GRVDVTVGSAL 291 (316)
Q Consensus 281 g~~gVivG~Al 291 (316)
+||||||||+
T Consensus 220 -aDGvIVGSa~ 229 (259)
T PF00290_consen 220 -ADGVIVGSAF 229 (259)
T ss_dssp -SSEEEESHHH
T ss_pred -CCEEEECHHH
Confidence 8999999998
No 198
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=97.66 E-value=0.007 Score=55.74 Aligned_cols=162 Identities=15% Similarity=0.112 Sum_probs=107.8
Q ss_pred CHHHHHHHHHHcCCCcceEEE-ec--CCcccHHHHHHHHHhCCCcEEE-----ecCCC-H--------HHHHHHHHcCCC
Q 021156 94 SAAEFANLYKEDGLTGGHAIM-LG--ADPLSKAAAIEALHAYPGGLQV-----GGGIN-S--------DNSLSYIEEGAT 156 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvD-Ld--a~~~~~~~i~~~v~~~~~pl~v-----GGGIr-~--------e~~~~~l~~Gad 156 (316)
++. -|..-.+.|++++.|.+ |. +..+....+..+.+.+.+|+.+ ||+.- + +|++.+.+.|++
T Consensus 10 s~~-~a~~A~~~GAdRiELc~~L~~GGlTPS~g~i~~~~~~~~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~Gad 88 (248)
T PRK11572 10 SME-CALTAQQAGADRIELCAAPKEGGLTPSLGVLKSVRERVTIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRELGFP 88 (248)
T ss_pred CHH-HHHHHHHcCCCEEEEccCcCCCCcCCCHHHHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCC
Confidence 454 44445577999998874 33 3346666676666667888775 67763 2 357777889999
Q ss_pred EEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC
Q 021156 157 HVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD 236 (316)
Q Consensus 157 ~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~ 236 (316)
-+|+|.... ++++|.+.++++.+..++-.+ .+.+.+... .++.+..+.+.++|+++|+ |+
T Consensus 89 GvV~G~L~~-dg~vD~~~~~~Li~~a~~~~v--------------TFHRAfD~~--~d~~~al~~l~~lG~~rIL-TS-- 148 (248)
T PRK11572 89 GLVTGVLDV-DGHVDMPRMRKIMAAAGPLAV--------------TFHRAFDMC--ANPLNALKQLADLGVARIL-TS-- 148 (248)
T ss_pred EEEEeeECC-CCCcCHHHHHHHHHHhcCCce--------------EEechhhcc--CCHHHHHHHHHHcCCCEEE-CC--
Confidence 999998764 478999999999987753222 122222221 2577888899999999987 33
Q ss_pred CccccCCC--CHHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhC
Q 021156 237 VEGKKLGI--DDELVALLGKYS-PIPVTYAGGVTTMADLEKIKVAG 279 (316)
Q Consensus 237 ~dG~~~G~--d~eli~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G 279 (316)
|..... ..+.++++.+.. +.-|+++|||+. +.+.++.+.|
T Consensus 149 --Gg~~~a~~g~~~L~~lv~~a~~~~Im~GgGV~~-~Nv~~l~~tG 191 (248)
T PRK11572 149 --GQQQDAEQGLSLIMELIAASDGPIIMAGAGVRL-SNLHKFLDAG 191 (248)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEeCCCCCH-HHHHHHHHcC
Confidence 222222 466777776543 333777777765 6788887666
No 199
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=97.66 E-value=0.004 Score=63.07 Aligned_cols=160 Identities=18% Similarity=0.134 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCcc----cHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADPL----SKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQ 169 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~~----~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~ 169 (316)
+..+.++...+.|+..+++=+=+.... --..+.+.+++.++++++-. +.+-+.+.|++.|=+|-....
T Consensus 308 ~~~~~l~~~l~~Gv~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~liind-----~~~lA~~~~adGvHl~~~d~~--- 379 (502)
T PLN02898 308 STVDAVRAAIEGGATIVQLREKEAETREFIEEAKACLAICRSYGVPLLIND-----RVDVALACDADGVHLGQSDMP--- 379 (502)
T ss_pred hHHHHHHHHHHcCCCEEEEccCCCCHHHHHHHHHHHHHHHHHhCCEEEEcC-----hHHHHHhcCCCEEEeChHhcC---
Confidence 455677777778887777654333211 11122333444566777654 567777889998877754322
Q ss_pred CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEE----eecCCccccCCCC
Q 021156 170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLV----HGVDVEGKKLGID 245 (316)
Q Consensus 170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilv----tdi~~dG~~~G~d 245 (316)
..+..+.+|++. ++++.+. +. +.+.+..+.|++.+.+ ...+..+ ....+
T Consensus 380 -----~~~~r~~~~~~~-~iG~S~h-------------------~~-~e~~~a~~~gadyi~~gpif~t~tk~~-~~~~g 432 (502)
T PLN02898 380 -----VRLARSLLGPGK-IIGVSCK-------------------TP-EQAEQAWKDGADYIGCGGVFPTNTKAN-NKTIG 432 (502)
T ss_pred -----HHHHHHhcCCCC-EEEEeCC-------------------CH-HHHHHHhhcCCCEEEECCeecCCCCCC-CCCCC
Confidence 234444455444 4666653 23 4467777889999864 2223332 23448
Q ss_pred HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcC---EEEEccch
Q 021156 246 DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRV---DVTVGSAL 291 (316)
Q Consensus 246 ~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~---gVivG~Al 291 (316)
++.++++.+..++||++-|||. .+++.++++.| ++ +|.+++++
T Consensus 433 ~~~~~~~~~~~~~Pv~aiGGI~-~~~~~~~~~~G--~~~~~gvav~~~i 478 (502)
T PLN02898 433 LDGLREVCEASKLPVVAIGGIS-ASNAASVMESG--APNLKGVAVVSAL 478 (502)
T ss_pred HHHHHHHHHcCCCCEEEECCCC-HHHHHHHHHcC--CCcCceEEEEeHH
Confidence 9999999888899999999996 89999999998 56 99999999
No 200
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=97.65 E-value=0.0006 Score=61.01 Aligned_cols=172 Identities=17% Similarity=0.157 Sum_probs=109.2
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCc-c---cHHHHHHHHH-hCCCcEEEecCCC-H-HHHHHHHHcCCCEEEeCCeeec
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADP-L---SKAAAIEALH-AYPGGLQVGGGIN-S-DNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~-~---~~~~i~~~v~-~~~~pl~vGGGIr-~-e~~~~~l~~Gad~VVigt~~~~ 166 (316)
+..+.++.+.++|++++|+==+|+.. + -.+.+++.++ ..+.|+-|===+. . .-++.+.++|++.|.+-.+...
T Consensus 13 ~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~g~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~H~E~~~ 92 (201)
T PF00834_consen 13 NLEEEIKRLEEAGADWLHIDIMDGHFVPNLTFGPDIIKAIRKITDLPLDVHLMVENPERYIEEFAEAGADYITFHAEATE 92 (201)
T ss_dssp GHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B-HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHHT-SEEEEEGGGTT
T ss_pred HHHHHHHHHHHcCCCEEEEeecccccCCcccCCHHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhcCCCEEEEcccchh
Confidence 45577788888999999998888763 1 2344555555 4556666555454 5 4499999999999988887666
Q ss_pred CCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCH
Q 021156 167 NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDD 246 (316)
Q Consensus 167 ~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~ 246 (316)
+ +..+-+..++.| -+.-+++... + +.+..+.+.+ -++.+++..++-....+.+..
T Consensus 93 ~----~~~~i~~ik~~g-~k~GialnP~----------------T---~~~~~~~~l~-~vD~VlvMsV~PG~~Gq~f~~ 147 (201)
T PF00834_consen 93 D----PKETIKYIKEAG-IKAGIALNPE----------------T---PVEELEPYLD-QVDMVLVMSVEPGFGGQKFIP 147 (201)
T ss_dssp T----HHHHHHHHHHTT-SEEEEEE-TT----------------S----GGGGTTTGC-CSSEEEEESS-TTTSSB--HG
T ss_pred C----HHHHHHHHHHhC-CCEEEEEECC----------------C---CchHHHHHhh-hcCEEEEEEecCCCCcccccH
Confidence 5 554445555565 3444444321 1 2233334444 489999999887544555544
Q ss_pred HHHHH---Hhhc-----CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156 247 ELVAL---LGKY-----SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG 295 (316)
Q Consensus 247 eli~~---l~~~-----~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~ 295 (316)
+.+++ +++. .++.+.+=|||+. +.+..+.++| ++.+++||++ |.
T Consensus 148 ~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~-~~~~~~~~aG--ad~~V~Gs~i--F~ 199 (201)
T PF00834_consen 148 EVLEKIRELRKLIPENGLDFEIEVDGGINE-ENIKQLVEAG--ADIFVAGSAI--FK 199 (201)
T ss_dssp GHHHHHHHHHHHHHHHTCGSEEEEESSEST-TTHHHHHHHT----EEEESHHH--HT
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEECCCCH-HHHHHHHHcC--CCEEEECHHH--hC
Confidence 44444 3332 3478999999987 5899999999 8999999999 64
No 201
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=97.65 E-value=0.0027 Score=60.58 Aligned_cols=161 Identities=20% Similarity=0.167 Sum_probs=101.9
Q ss_pred HHHHHHHHcCCCcceEEEecCCc-ccHHHHHHHHHh--CCCcEEEecCC---C---HHHHHHHHHcCCCEEEeCCeeecC
Q 021156 97 EFANLYKEDGLTGGHAIMLGADP-LSKAAAIEALHA--YPGGLQVGGGI---N---SDNSLSYIEEGATHVIVTSYVFNN 167 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvDLda~~-~~~~~i~~~v~~--~~~pl~vGGGI---r---~e~~~~~l~~Gad~VVigt~~~~~ 167 (316)
++|..-.++|..+ ++.+.... ......++.+++ .+-|+-|+==. . .+.++-+++.+...|+++- .+
T Consensus 18 ~LaaAVS~AGgLG--~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~~---G~ 92 (320)
T cd04743 18 EFAVAVAEGGGLP--FIALALMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIAG---GR 92 (320)
T ss_pred HHHHHHHhCCccc--cCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEcC---CC
Confidence 4888888888443 33332211 112223333443 34565444311 1 3568888899998887652 33
Q ss_pred CCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC--C
Q 021156 168 GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI--D 245 (316)
Q Consensus 168 ~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~--d 245 (316)
|..++++. ..| |.+-..+ .-.+.++.+++.|+|.+++...+.-|+. |. -
T Consensus 93 ----P~~~~~lk-~~G---i~v~~~v--------------------~s~~~A~~a~~~GaD~vVaqG~EAGGH~-G~~~t 143 (320)
T cd04743 93 ----PDQARALE-AIG---ISTYLHV--------------------PSPGLLKQFLENGARKFIFEGRECGGHV-GPRSS 143 (320)
T ss_pred ----hHHHHHHH-HCC---CEEEEEe--------------------CCHHHHHHHHHcCCCEEEEecCcCcCCC-CCCCc
Confidence 65554443 344 2222222 1236789999999999999999887764 53 3
Q ss_pred HHHHHHHhhc----------CCCcEEEEeCCCCHHHHHHHHHhCC-----Cc-CEEEEccch
Q 021156 246 DELVALLGKY----------SPIPVTYAGGVTTMADLEKIKVAGI-----GR-VDVTVGSAL 291 (316)
Q Consensus 246 ~eli~~l~~~----------~~iPVIasGGI~s~eDi~~l~~~G~-----g~-~gVivG~Al 291 (316)
+.++.++.+. +++|||++|||.+-..+..++.+|+ |+ +||.+|+++
T Consensus 144 ~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrF 205 (320)
T cd04743 144 FVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAY 205 (320)
T ss_pred hhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHH
Confidence 4455554432 2799999999999999999999983 12 799999998
No 202
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=97.64 E-value=0.00083 Score=62.27 Aligned_cols=133 Identities=20% Similarity=0.223 Sum_probs=87.6
Q ss_pred CCCcEEEecCCC------HHH-HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe
Q 021156 132 YPGGLQVGGGIN------SDN-SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT 204 (316)
Q Consensus 132 ~~~pl~vGGGIr------~e~-~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~ 204 (316)
..+|+.+=+=.+ .+. ++++.++|+|-+++--...+- .+.+.+..+++|=+.|.+ +
T Consensus 93 ~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee----~~~~~~~~~~~gi~~I~l------------v-- 154 (265)
T COG0159 93 VKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEE----SDELLKAAEKHGIDPIFL------------V-- 154 (265)
T ss_pred CCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHH----HHHHHHHHHHcCCcEEEE------------e--
Confidence 456776555443 244 667788999998886655543 455666667776222211 1
Q ss_pred CCcceecccCHHHHHHHHHHcCCCEEEEeec-CCccccCCC--C-HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCC
Q 021156 205 DRWQKFSDVYLDERVLDFLASYADEFLVHGV-DVEGKKLGI--D-DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGI 280 (316)
Q Consensus 205 ~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi-~~dG~~~G~--d-~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~ 280 (316)
+.....+..++..+..-+.+.+-++ -..|..... + .++++++++.+++|+.++-||++.++++++.+.
T Consensus 155 ------aPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-- 226 (265)
T COG0159 155 ------APTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA-- 226 (265)
T ss_pred ------CCCCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh--
Confidence 0112345666666655555544444 222333331 2 458889999899999999999999999999998
Q ss_pred CcCEEEEccch
Q 021156 281 GRVDVTVGSAL 291 (316)
Q Consensus 281 g~~gVivG~Al 291 (316)
++|||||||+
T Consensus 227 -ADGVIVGSAi 236 (265)
T COG0159 227 -ADGVIVGSAI 236 (265)
T ss_pred -CCeEEEcHHH
Confidence 5999999998
No 203
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=97.59 E-value=0.00041 Score=63.43 Aligned_cols=77 Identities=14% Similarity=0.209 Sum_probs=53.6
Q ss_pred ecCCccCHHHHHHHHHHcCCCcceE--EEecCC-cccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCC
Q 021156 88 NFESDKSAAEFANLYKEDGLTGGHA--IMLGAD-PLSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTS 162 (316)
Q Consensus 88 ~~~~~~~p~e~a~~~~~~G~~~l~l--vDLda~-~~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt 162 (316)
+|+ .+||. .|+.+++.|++-+-- --+... ...++..++.++ ..++|++++|||. .+|+.++++.||+-|++||
T Consensus 128 pyc-~dd~~-~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~S 205 (248)
T cd04728 128 PYC-TDDPV-LAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (248)
T ss_pred EEe-CCCHH-HHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 355 35776 778888877664411 001111 122455555555 4689999999998 5999999999999999999
Q ss_pred eeec
Q 021156 163 YVFN 166 (316)
Q Consensus 163 ~~~~ 166 (316)
+..+
T Consensus 206 AIt~ 209 (248)
T cd04728 206 AIAK 209 (248)
T ss_pred HhcC
Confidence 9876
No 204
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=97.57 E-value=0.00065 Score=65.91 Aligned_cols=134 Identities=23% Similarity=0.275 Sum_probs=94.8
Q ss_pred CcEEEecCCC--H---HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcc
Q 021156 134 GGLQVGGGIN--S---DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQ 208 (316)
Q Consensus 134 ~pl~vGGGIr--~---e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~ 208 (316)
-.+.+|.+|- . +.+..+.++|+|.||+++.-=+. .+-.++++-+.+.|+ + +++- .| -|.
T Consensus 238 kqll~gAaiGTre~dK~rl~ll~~aGvdvviLDSSqGnS-~~qiemik~iK~~yP-~-----l~Vi--aG--NVV----- 301 (503)
T KOG2550|consen 238 KQLLCGAAIGTRDDDKERLDLLVQAGVDVVILDSSQGNS-IYQLEMIKYIKETYP-D-----LQII--AG--NVV----- 301 (503)
T ss_pred cceeeeeccccccchhHHHHHhhhcCCcEEEEecCCCcc-hhHHHHHHHHHhhCC-C-----ceee--cc--cee-----
Confidence 4678899993 2 33667778999999997753221 222688888888884 3 3332 23 121
Q ss_pred eecccCHHHHHHHHHHcCCCEE---------EE-eecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHh
Q 021156 209 KFSDVYLDERVLDFLASYADEF---------LV-HGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVA 278 (316)
Q Consensus 209 ~~~~~~~~e~a~~~~~~Ga~~i---------lv-tdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~ 278 (316)
.-+.++.+...|++.+ .+ ..+-.-|.-+|--.--+.+++...++|+|+-|||.+..|+.+.+.+
T Consensus 302 ------T~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviADGGiq~~Ghi~KAl~l 375 (503)
T KOG2550|consen 302 ------TKEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQFGVPCIADGGIQNVGHVVKALGL 375 (503)
T ss_pred ------eHHHHHHHHHccCceeEeccccCceeeeceeeeccCCcccchhhHHHHHHhcCCceeecCCcCccchhHhhhhc
Confidence 2367889999999864 22 2344556656654444556667789999999999999999999999
Q ss_pred CCCcCEEEEccch
Q 021156 279 GIGRVDVTVGSAL 291 (316)
Q Consensus 279 G~g~~gVivG~Al 291 (316)
| ++.||.|.-+
T Consensus 376 G--AstVMmG~lL 386 (503)
T KOG2550|consen 376 G--ASTVMMGGLL 386 (503)
T ss_pred C--chhheeccee
Confidence 8 8899999765
No 205
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.55 E-value=0.00041 Score=65.24 Aligned_cols=85 Identities=22% Similarity=0.303 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHcCCCcceEE--------EecCC-------------cc----cHHHHHHHHHhCCCcEEEecCCC-HHHH
Q 021156 94 SAAEFANLYKEDGLTGGHAI--------MLGAD-------------PL----SKAAAIEALHAYPGGLQVGGGIN-SDNS 147 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lv--------DLda~-------------~~----~~~~i~~~v~~~~~pl~vGGGIr-~e~~ 147 (316)
+..++|+.+.++|++.+.++ |+... .. ....+.++.+.+++||+..|||+ .+|+
T Consensus 167 ~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da 246 (296)
T cd04740 167 DIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDA 246 (296)
T ss_pred hHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHH
Confidence 57788999999999998876 33210 00 11223333345789999999998 5999
Q ss_pred HHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156 148 LSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVV 182 (316)
Q Consensus 148 ~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~ 182 (316)
.+++.+|||.|-+++.++.+ |.++.++.+..
T Consensus 247 ~~~l~~GAd~V~igra~l~~----p~~~~~i~~~l 277 (296)
T cd04740 247 LEFLMAGASAVQVGTANFVD----PEAFKEIIEGL 277 (296)
T ss_pred HHHHHcCCCEEEEchhhhcC----hHHHHHHHHHH
Confidence 99999999999999999997 88888887665
No 206
>PRK08999 hypothetical protein; Provisional
Probab=97.54 E-value=0.0046 Score=58.49 Aligned_cols=157 Identities=19% Similarity=0.084 Sum_probs=97.9
Q ss_pred HHHHHHHHcCCCcceEEEecCCcc----cHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCH
Q 021156 97 EFANLYKEDGLTGGHAIMLGADPL----SKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDL 172 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvDLda~~~----~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~ 172 (316)
+.++.....|+..+++=+=+.... --..+.+.+++.++++++-. +.+-+++.|++.|=+|..... +
T Consensus 148 ~~~~~~l~~g~~~vqlR~k~~~~~~~~~~~~~l~~~~~~~~~~liind-----~~~la~~~~~~GvHl~~~d~~-----~ 217 (312)
T PRK08999 148 ARLERALAAGIRLIQLRAPQLPPAAYRALARAALGLCRRAGAQLLLNG-----DPELAEDLGADGVHLTSAQLA-----A 217 (312)
T ss_pred HHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEEC-----cHHHHHhcCCCEEEcChhhcC-----h
Confidence 344444455666666655443221 11223333445567777765 456667788888877754322 1
Q ss_pred HHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc---CCCCHHHH
Q 021156 173 ERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK---LGIDDELV 249 (316)
Q Consensus 173 eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~---~G~d~eli 249 (316)
.+..+ ++++. ++++.+. +. +.++++.+.|++.+.+-.+-...+. ....++.+
T Consensus 218 ---~~~r~-~~~~~-~ig~S~h-------------------~~-~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~ 272 (312)
T PRK08999 218 ---LAARP-LPAGR-WVAASCH-------------------DA-EELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGF 272 (312)
T ss_pred ---Hhhcc-CCCCC-EEEEecC-------------------CH-HHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHH
Confidence 11222 44333 4555552 12 3466777889999876444222222 33478889
Q ss_pred HHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 250 ALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 250 ~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
+++++..++||++-||| +.+++.++++.| +++|.+-+++
T Consensus 273 ~~~~~~~~~Pv~AiGGI-~~~~~~~~~~~g--~~gva~i~~~ 311 (312)
T PRK08999 273 AALIAGVPLPVYALGGL-GPGDLEEAREHG--AQGIAGIRGL 311 (312)
T ss_pred HHHHHhCCCCEEEECCC-CHHHHHHHHHhC--CCEEEEEEEe
Confidence 99998889999999999 899999999998 8888887765
No 207
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=97.54 E-value=0.0002 Score=64.50 Aligned_cols=84 Identities=15% Similarity=0.173 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCC-----cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHc-CCCEEEeCCeeec
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGAD-----PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEE-GATHVIVTSYVFN 166 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~-----~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~-Gad~VVigt~~~~ 166 (316)
+..++++.+.+.|++.+++..-... +.+.+.+.++.+..++|+++.|||+ .++++++++. |||.|.+|+.++.
T Consensus 139 ~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~ 218 (231)
T cd02801 139 ETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALG 218 (231)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHh
Confidence 5778999999999988877654321 1244444444446789999999998 5999999998 8999999999999
Q ss_pred CCCCCHHHHHHHHHH
Q 021156 167 NGQMDLERLKDLVRV 181 (316)
Q Consensus 167 ~~~~~~eli~ei~~~ 181 (316)
| |+++.++.+.
T Consensus 219 ~----P~~~~~~~~~ 229 (231)
T cd02801 219 N----PWLFREIKEL 229 (231)
T ss_pred C----CHHHHhhhhc
Confidence 8 9999887653
No 208
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=97.54 E-value=0.00047 Score=66.07 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=56.5
Q ss_pred HHHHHHHHHcCCCEEEEeecCCcccc-------CCC-----------C-----HHHHHHHhhcC-CCcEEEEeCCCCHHH
Q 021156 216 DERVLDFLASYADEFLVHGVDVEGKK-------LGI-----------D-----DELVALLGKYS-PIPVTYAGGVTTMAD 271 (316)
Q Consensus 216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~-------~G~-----------d-----~eli~~l~~~~-~iPVIasGGI~s~eD 271 (316)
.+.++.+.+.|++.|.+... -|+. .+. | .+.+.++++.+ ++|||++|||++..|
T Consensus 192 ~~~a~~l~~~Gvd~I~vsG~--GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIiasGGIr~~~d 269 (326)
T cd02811 192 RETAKRLADAGVKAIDVAGA--GGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGIRNGLD 269 (326)
T ss_pred HHHHHHHHHcCCCEEEECCC--CCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEECCCCCHHH
Confidence 48899999999999987653 2210 110 2 24566666656 899999999999999
Q ss_pred HHHHHHhCCCcCEEEEccch
Q 021156 272 LEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 272 i~~l~~~G~g~~gVivG~Al 291 (316)
+.+++.+| +++|.+|+++
T Consensus 270 v~kal~lG--Ad~V~i~~~~ 287 (326)
T cd02811 270 IAKALALG--ADLVGMAGPF 287 (326)
T ss_pred HHHHHHhC--CCEEEEcHHH
Confidence 99999998 9999999987
No 209
>PRK00208 thiG thiazole synthase; Reviewed
Probab=97.52 E-value=0.00056 Score=62.63 Aligned_cols=74 Identities=18% Similarity=0.242 Sum_probs=52.8
Q ss_pred cCCccCHHHHHHHHHHcCCCcceEEEec---CC--cccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeC
Q 021156 89 FESDKSAAEFANLYKEDGLTGGHAIMLG---AD--PLSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVT 161 (316)
Q Consensus 89 ~~~~~~p~e~a~~~~~~G~~~l~lvDLd---a~--~~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVig 161 (316)
|+ .+||. .|+.+++.|++-+ --|. +. ...++..++.++ ..++|++++|||. .+|+.+.++.|||-|++|
T Consensus 129 yc-~~d~~-~ak~l~~~G~~~v--mPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~ 204 (250)
T PRK00208 129 YC-TDDPV-LAKRLEEAGCAAV--MPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (250)
T ss_pred Ee-CCCHH-HHHHHHHcCCCEe--CCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 55 35676 7777777776644 1111 11 122355556655 4689999999998 599999999999999999
Q ss_pred Ceeec
Q 021156 162 SYVFN 166 (316)
Q Consensus 162 t~~~~ 166 (316)
|+..+
T Consensus 205 SAItk 209 (250)
T PRK00208 205 TAIAV 209 (250)
T ss_pred hHhhC
Confidence 99876
No 210
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.50 E-value=0.001 Score=63.23 Aligned_cols=81 Identities=20% Similarity=0.132 Sum_probs=66.3
Q ss_pred HHHHHHHHHcCCCEEEEee-cCCccccCCC-CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhh
Q 021156 216 DERVLDFLASYADEFLVHG-VDVEGKKLGI-DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDI 293 (316)
Q Consensus 216 ~e~a~~~~~~Ga~~ilvtd-i~~dG~~~G~-d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~ 293 (316)
...++++.+.|+ +.+.. -+.-|+..|. |.+.++.+.+..++||+..+||++.+|+..+.++| ++||.+.+|+..
T Consensus 208 ~~~a~~l~~~g~--~avmPl~~pIGsg~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelG--adgVL~nSaIa~ 283 (326)
T PRK11840 208 PIAAKRLEDAGA--VAVMPLGAPIGSGLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELG--CDGVLMNTAIAE 283 (326)
T ss_pred HHHHHHHHhcCC--EEEeeccccccCCCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcC--CCEEEEcceecc
Confidence 467888999888 34455 4566888888 99999999988899999999999999999999999 999999999933
Q ss_pred ccCcccH
Q 021156 294 FGGNLAY 300 (316)
Q Consensus 294 ~~g~~~~ 300 (316)
-.+|...
T Consensus 284 a~dPv~M 290 (326)
T PRK11840 284 AKNPVLM 290 (326)
T ss_pred CCCHHHH
Confidence 3333333
No 211
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.47 E-value=0.0028 Score=57.41 Aligned_cols=83 Identities=14% Similarity=0.131 Sum_probs=63.1
Q ss_pred HHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccC
Q 021156 218 RVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGG 296 (316)
Q Consensus 218 ~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g 296 (316)
.++++++.||..+.=. -.--|+..|+ |...++.+.+..++|||+--||+++.|.....++| +++|++.+|+-.-.+
T Consensus 143 ~arrLee~GcaavMPl-~aPIGSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG--~DaVL~NTAiA~A~D 219 (262)
T COG2022 143 LARRLEEAGCAAVMPL-GAPIGSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAMELG--ADAVLLNTAIARAKD 219 (262)
T ss_pred HHHHHHhcCceEeccc-cccccCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcc--cceeehhhHhhccCC
Confidence 5566666666544211 1334888898 88899999888899999999999999999999999 999999999944444
Q ss_pred cccHHHH
Q 021156 297 NLAYKDV 303 (316)
Q Consensus 297 ~~~~~~~ 303 (316)
+....++
T Consensus 220 Pv~MA~A 226 (262)
T COG2022 220 PVAMARA 226 (262)
T ss_pred hHHHHHH
Confidence 4444333
No 212
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=97.47 E-value=0.00048 Score=65.02 Aligned_cols=86 Identities=19% Similarity=0.232 Sum_probs=65.2
Q ss_pred cCHHHHHHHHHHcCCCcceEEE--------ecCC----------------cc-cHHHHHHHHHhCCCcEEEecCCC-HHH
Q 021156 93 KSAAEFANLYKEDGLTGGHAIM--------LGAD----------------PL-SKAAAIEALHAYPGGLQVGGGIN-SDN 146 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvD--------Lda~----------------~~-~~~~i~~~v~~~~~pl~vGGGIr-~e~ 146 (316)
.+..++|+.+.++|++.++++. ++.. .+ ....+.++.+.+++|++.-|||+ .++
T Consensus 169 ~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~d 248 (301)
T PRK07259 169 TDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAED 248 (301)
T ss_pred hhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 3677899999999999998753 2110 00 12233333345789999999998 599
Q ss_pred HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156 147 SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVV 182 (316)
Q Consensus 147 ~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~ 182 (316)
+.+++.+|||.|.+++.++.+ |+++.++.+..
T Consensus 249 a~~~l~aGAd~V~igr~ll~~----P~~~~~i~~~l 280 (301)
T PRK07259 249 AIEFIMAGASAVQVGTANFYD----PYAFPKIIEGL 280 (301)
T ss_pred HHHHHHcCCCceeEcHHHhcC----cHHHHHHHHHH
Confidence 999999999999999999987 88888887654
No 213
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=97.46 E-value=0.00048 Score=66.23 Aligned_cols=72 Identities=18% Similarity=0.137 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCCEEEEeecCCcccc----------C----C--CCH-----HHHHHHhh-cCCCcEEEEeCCCCHHHHH
Q 021156 216 DERVLDFLASYADEFLVHGVDVEGKK----------L----G--IDD-----ELVALLGK-YSPIPVTYAGGVTTMADLE 273 (316)
Q Consensus 216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~----------~----G--~d~-----eli~~l~~-~~~iPVIasGGI~s~eDi~ 273 (316)
.+.++.+.+.|++.|.++.. -|+. . . .|| +.+.++++ ..++|||++|||++.+|+.
T Consensus 193 ~~~a~~L~~aGvd~I~Vsg~--gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~di~ 270 (333)
T TIGR02151 193 KEVAKLLADAGVSAIDVAGA--GGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGLDVA 270 (333)
T ss_pred HHHHHHHHHcCCCEEEECCC--CCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHHHHH
Confidence 58899999999999988763 2321 1 0 133 34555555 4689999999999999999
Q ss_pred HHHHhCCCcCEEEEccch
Q 021156 274 KIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 274 ~l~~~G~g~~gVivG~Al 291 (316)
+++.+| ++.|.+|+++
T Consensus 271 kaLalG--Ad~V~igr~~ 286 (333)
T TIGR02151 271 KAIALG--ADAVGMARPF 286 (333)
T ss_pred HHHHhC--CCeehhhHHH
Confidence 999998 9999999998
No 214
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=97.42 E-value=0.002 Score=59.36 Aligned_cols=111 Identities=11% Similarity=0.051 Sum_probs=84.8
Q ss_pred CceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEE
Q 021156 184 KQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYA 263 (316)
Q Consensus 184 ~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIas 263 (316)
++++.+..++|.. -...|+. ....++.++++.+++.|+..| ++..|+++-|-+++.++.+++.+++||+.-
T Consensus 38 ~~~~~vIaEiKr~-----SPs~G~i-~~~~d~~~~A~~y~~~GA~aI---SVlTe~~~F~Gs~~~l~~v~~~v~~PvL~K 108 (247)
T PRK13957 38 SRSFSIIAECKRK-----SPSAGEL-RADYHPVQIAKTYETLGASAI---SVLTDQSYFGGSLEDLKSVSSELKIPVLRK 108 (247)
T ss_pred CCCCeEEEEEecC-----CCCCCCc-CCCCCHHHHHHHHHHCCCcEE---EEEcCCCcCCCCHHHHHHHHHhcCCCEEec
Confidence 3557777788732 1123443 245689999999999999987 677788999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156 264 GGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA 308 (316)
Q Consensus 264 GGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~ 308 (316)
+.|-++.++.+....| +++|++=-++ ++ +-.++++.+.+.
T Consensus 109 DFIid~~QI~ea~~~G--ADavLLI~~~--L~-~~~l~~l~~~a~ 148 (247)
T PRK13957 109 DFILDEIQIREARAFG--ASAILLIVRI--LT-PSQIKSFLKHAS 148 (247)
T ss_pred cccCCHHHHHHHHHcC--CCEEEeEHhh--CC-HHHHHHHHHHHH
Confidence 9999999999999998 8888776666 43 223444444443
No 215
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=97.42 E-value=0.00049 Score=64.88 Aligned_cols=86 Identities=20% Similarity=0.239 Sum_probs=64.4
Q ss_pred cCHHHHHHHHHHcCCCcceEE--------EecCC-------------ccc----HHHHHHHHHhCCCcEEEecCCC-HHH
Q 021156 93 KSAAEFANLYKEDGLTGGHAI--------MLGAD-------------PLS----KAAAIEALHAYPGGLQVGGGIN-SDN 146 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lv--------DLda~-------------~~~----~~~i~~~v~~~~~pl~vGGGIr-~e~ 146 (316)
.+..++|+.+.++|++.+++. |+... +.. ...+.++.+.+++|++.-|||+ .+|
T Consensus 169 ~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~~d 248 (300)
T TIGR01037 169 TDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGITSFED 248 (300)
T ss_pred hhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCCCCHHH
Confidence 356789999999999999885 22110 001 1223333345789999999998 599
Q ss_pred HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156 147 SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVV 182 (316)
Q Consensus 147 ~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~ 182 (316)
+.+++.+|||.|.+|+.++.+ |+++.++.+..
T Consensus 249 a~~~l~~GAd~V~igr~~l~~----p~~~~~i~~~l 280 (300)
T TIGR01037 249 ALEFLMAGASAVQVGTAVYYR----GFAFKKIIEGL 280 (300)
T ss_pred HHHHHHcCCCceeecHHHhcC----chHHHHHHHHH
Confidence 999999999999999999997 77777777654
No 216
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=97.40 E-value=0.00025 Score=66.85 Aligned_cols=162 Identities=22% Similarity=0.185 Sum_probs=97.1
Q ss_pred CCcEEEecCC-C---HHHHH---HHHHcCCCEEEeCCeeecC-C----CCCHHHHHHHHHHhcCceEEEeeeeeecCCee
Q 021156 133 PGGLQVGGGI-N---SDNSL---SYIEEGATHVIVTSYVFNN-G----QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKY 200 (316)
Q Consensus 133 ~~pl~vGGGI-r---~e~~~---~~l~~Gad~VVigt~~~~~-~----~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~ 200 (316)
++|+++.-.- . .+|.. +.++.|||.+-++-..-+- + ..+++...++.+... ...-+.+-+|
T Consensus 96 ~~pvi~Si~~~~~~~~~d~~~~a~~~~~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~-~~~~~Pv~vK------ 168 (295)
T PF01180_consen 96 DIPVIASINGDSEEEIEDWAELAKRLEAGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVR-EAVDIPVFVK------ 168 (295)
T ss_dssp CEEEEEEE-TSSSGHHHHHHHHHHHHHHHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHH-HHHSSEEEEE------
T ss_pred ceeEEEEeecCCchhHHHHHHHHHHhcCcCCceEEEeeccCCCCccccccCHHHHHHHHHHHH-hccCCCEEEE------
Confidence 5777765422 2 24422 3345899998886433211 0 113666666665542 2221222222
Q ss_pred EEEeCCcceecccCHHHHHHHHHHcCCCEEEEee-------cCCc----------cccCCC-----CHHHHHHHhhcCC-
Q 021156 201 AIVTDRWQKFSDVYLDERVLDFLASYADEFLVHG-------VDVE----------GKKLGI-----DDELVALLGKYSP- 257 (316)
Q Consensus 201 ~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd-------i~~d----------G~~~G~-----d~eli~~l~~~~~- 257 (316)
+.... +.....+.+..+.+.|++.|..+. +|.+ |-++|+ -+.+++++++.++
T Consensus 169 ---L~p~~--~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~ 243 (295)
T PF01180_consen 169 ---LSPNF--TDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQ 243 (295)
T ss_dssp ---E-STS--SCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTT
T ss_pred ---ecCCC--CchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhcccc
Confidence 22111 122345667777788999876211 2222 123454 3456777888777
Q ss_pred -CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156 258 -IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ 309 (316)
Q Consensus 258 -iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~ 309 (316)
+|||++|||.|.+|+.+.+.+| ++.|-+++++ +|.|+-.++++.+-+.+
T Consensus 244 ~i~Iig~GGI~s~~da~e~l~aG--A~~Vqv~Sal-~~~Gp~~~~~i~~~L~~ 293 (295)
T PF01180_consen 244 DIPIIGVGGIHSGEDAIEFLMAG--ASAVQVCSAL-IYRGPGVIRRINRELEE 293 (295)
T ss_dssp SSEEEEESS--SHHHHHHHHHHT--ESEEEESHHH-HHHGTTHHHHHHHHHHH
T ss_pred ceEEEEeCCcCCHHHHHHHHHhC--CCHheechhh-hhcCcHHHHHHHHHHHh
Confidence 9999999999999999999999 8999999999 56688888888765544
No 217
>PLN02535 glycolate oxidase
Probab=97.40 E-value=0.001 Score=64.68 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=56.6
Q ss_pred HHHHHHHHcCCCEEEEeecCCccccCC--C-CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 217 ERVLDFLASYADEFLVHGVDVEGKKLG--I-DDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G--~-d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
+.++.+.+.|++.|.+.+-- |...+ + -.+.+.++.+.+ ++|||+.|||++-.|+.+++.+| +++|.+|+++
T Consensus 235 ~dA~~a~~~GvD~I~vsn~G--Gr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalG--A~aV~vGr~~ 310 (364)
T PLN02535 235 EDAIKAVEVGVAGIIVSNHG--ARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALG--AQAVLVGRPV 310 (364)
T ss_pred HHHHHHHhcCCCEEEEeCCC--cCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcC--CCEEEECHHH
Confidence 56899999999999875432 33222 2 256777776654 69999999999999999999999 8999999998
No 218
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.39 E-value=0.026 Score=50.50 Aligned_cols=171 Identities=15% Similarity=0.109 Sum_probs=110.2
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEEEecCC-C-HHHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQVGGGI-N-SDNSLSYIEEGATHVIVTSYVFNNGQM 170 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~vGGGI-r-~e~~~~~l~~Gad~VVigt~~~~~~~~ 170 (316)
+..++++.+.+.|++-+-+..- .+.....++.++ +.+ .+.+|.|- . .++++++.++||+.+|-=..
T Consensus 17 ~a~~ia~al~~gGi~~iEit~~---tp~a~~~I~~l~~~~~-~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~------- 85 (201)
T PRK06015 17 HAVPLARALAAGGLPAIEITLR---TPAALDAIRAVAAEVE-EAIVGAGTILNAKQFEDAAKAGSRFIVSPGT------- 85 (201)
T ss_pred HHHHHHHHHHHCCCCEEEEeCC---CccHHHHHHHHHHHCC-CCEEeeEeCcCHHHHHHHHHcCCCEEECCCC-------
Confidence 4567888888888775444432 233444445554 454 47788776 4 59999999999998764332
Q ss_pred CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHH
Q 021156 171 DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVA 250 (316)
Q Consensus 171 ~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~ 250 (316)
+++.++.. ++++ ++.+- | - .++ ..+....+.|++.+=+..-+.- .|+ ..++
T Consensus 86 ~~~vi~~a-~~~~----i~~iP-----G--------~-----~Tp-tEi~~A~~~Ga~~vK~FPa~~~---GG~--~yik 136 (201)
T PRK06015 86 TQELLAAA-NDSD----VPLLP-----G--------A-----ATP-SEVMALREEGYTVLKFFPAEQA---GGA--AFLK 136 (201)
T ss_pred CHHHHHHH-HHcC----CCEeC-----C--------C-----CCH-HHHHHHHHCCCCEEEECCchhh---CCH--HHHH
Confidence 37776554 4554 23331 1 1 123 4566777899998866664322 233 4677
Q ss_pred HHhh-cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcc----cHHHHHHHHHh
Q 021156 251 LLGK-YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNL----AYKDVVAWHAQ 309 (316)
Q Consensus 251 ~l~~-~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~----~~~~~~~~~~~ 309 (316)
.++. ..++|++..|||.. +++.+.+++| ...++.|+.+ +...+ .++++.+.+++
T Consensus 137 al~~plp~~~l~ptGGV~~-~n~~~~l~ag--~~~~~ggs~l--~~~~~~~~~~~~~i~~~a~~ 195 (201)
T PRK06015 137 ALSSPLAGTFFCPTGGISL-KNARDYLSLP--NVVCVGGSWV--APKELVAAGDWAGITKLAAE 195 (201)
T ss_pred HHHhhCCCCcEEecCCCCH-HHHHHHHhCC--CeEEEEchhh--CCchhhhcccHHHHHHHHHH
Confidence 7765 35799999999977 7999999998 5567778888 65433 34555554444
No 219
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=97.38 E-value=0.0043 Score=57.42 Aligned_cols=139 Identities=17% Similarity=0.084 Sum_probs=99.0
Q ss_pred HHHHHHHHcCCCEE--EeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156 145 DNSLSYIEEGATHV--IVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF 222 (316)
Q Consensus 145 e~~~~~l~~Gad~V--Vigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~ 222 (316)
+.++++.+.|...+ =+|....++ .+.++.+.+.+|+ .+.+.+|.. .+|.. .+..++++.+
T Consensus 91 ~~~~~~~~~G~~~~KiKvg~~~~~d----~~~v~~vr~~~g~-~~~l~vDan----------~~~~~---~~a~~~~~~l 152 (265)
T cd03315 91 EEARRALEAGFRTFKLKVGRDPARD----VAVVAALREAVGD-DAELRVDAN----------RGWTP---KQAIRALRAL 152 (265)
T ss_pred HHHHHHHHCCCCEEEEecCCCHHHH----HHHHHHHHHhcCC-CCEEEEeCC----------CCcCH---HHHHHHHHHH
Confidence 46777888897744 345432233 7889999998974 566788873 35653 2466788888
Q ss_pred HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHH
Q 021156 223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKD 302 (316)
Q Consensus 223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~ 302 (316)
.+.++..+ - .-....|++.++++++.+++||.+.+.+.+..++.++.+.+ .++.+.+--+. .+|-....+
T Consensus 153 ~~~~i~~i--E-----eP~~~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~-~~d~v~~k~~~--~GGi~~~~~ 222 (265)
T cd03315 153 EDLGLDYV--E-----QPLPADDLEGRAALARATDTPIMADESAFTPHDAFRELALG-AADAVNIKTAK--TGGLTKAQR 222 (265)
T ss_pred HhcCCCEE--E-----CCCCcccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhC-CCCEEEEeccc--ccCHHHHHH
Confidence 88887644 1 12344589999999999999999999999999999999887 47777776666 666555666
Q ss_pred HHHHHHhhc
Q 021156 303 VVAWHAQQE 311 (316)
Q Consensus 303 ~~~~~~~~~ 311 (316)
+.+++++..
T Consensus 223 ~~~~A~~~g 231 (265)
T cd03315 223 VLAVAEALG 231 (265)
T ss_pred HHHHHHHcC
Confidence 666665543
No 220
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=97.37 E-value=0.00082 Score=64.31 Aligned_cols=85 Identities=9% Similarity=0.067 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCC-----cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHH-cCCCEEEeCCeeec
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGAD-----PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIE-EGATHVIVTSYVFN 166 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~-----~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~-~Gad~VVigt~~~~ 166 (316)
+..++|+.+.++|++.+++-.-... ..+...+.++.+++++||+.-|||+ .++++++++ .|||.|.+|..++.
T Consensus 150 ~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~ 229 (321)
T PRK10415 150 NCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQG 229 (321)
T ss_pred hHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhc
Confidence 5778999999999998877654422 2345555555556899999999998 599999997 69999999999999
Q ss_pred CCCCCHHHHHHHHHHh
Q 021156 167 NGQMDLERLKDLVRVV 182 (316)
Q Consensus 167 ~~~~~~eli~ei~~~~ 182 (316)
| |.++.++.+.+
T Consensus 230 n----P~if~~~~~~~ 241 (321)
T PRK10415 230 R----PWIFREIQHYL 241 (321)
T ss_pred C----ChHHHHHHHHH
Confidence 8 99999987644
No 221
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.36 E-value=0.0071 Score=56.85 Aligned_cols=156 Identities=16% Similarity=0.116 Sum_probs=98.7
Q ss_pred HHHHhCCCc--EEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe
Q 021156 127 EALHAYPGG--LQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT 204 (316)
Q Consensus 127 ~~v~~~~~p--l~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~ 204 (316)
...++..+| +-.+=|-..+.+++++++|++.|.++...+.- +=|.+..+++++..-+ .-+++-.-. | .+.-
T Consensus 68 ~~A~~~~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~DgS~l~~-eeNi~~T~~vve~Ah~--~gv~VEaEl--G--~vgg 140 (283)
T PRK07998 68 RHADKMDVPVSLHLDHGKTFEDVKQAVRAGFTSVMIDGAALPF-EENIAFTKEAVDFAKS--YGVPVEAEL--G--AILG 140 (283)
T ss_pred HHHHHCCCCEEEECcCCCCHHHHHHHHHcCCCEEEEeCCCCCH-HHHHHHHHHHHHHHHH--cCCEEEEEe--c--cCCC
Confidence 333444555 45566666799999999999999996544421 0024555555544311 112332210 1 1110
Q ss_pred -CCc---ceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC--CHHHHHHHhhcCCCcEEEEeCCCCH-HHHHHHHH
Q 021156 205 -DRW---QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI--DDELVALLGKYSPIPVTYAGGVTTM-ADLEKIKV 277 (316)
Q Consensus 205 -~gw---~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~--d~eli~~l~~~~~iPVIasGGI~s~-eDi~~l~~ 277 (316)
.+. ....--++.+..+.+.+.|++.+-+--=+.-|.+.+| |++.++++.+.+++|+..-||=+.. ++++++.+
T Consensus 141 ~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~ 220 (283)
T PRK07998 141 KEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILRSFVN 220 (283)
T ss_pred ccccccccccccCCHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHH
Confidence 000 0111126777777777899997643333445666544 8999999999999999999998877 67788888
Q ss_pred hCCCcCEEEEccch
Q 021156 278 AGIGRVDVTVGSAL 291 (316)
Q Consensus 278 ~G~g~~gVivG~Al 291 (316)
.| +..+-|++.+
T Consensus 221 ~G--i~KiNi~Tel 232 (283)
T PRK07998 221 YK--VAKVNIASDL 232 (283)
T ss_pred cC--CcEEEECHHH
Confidence 88 9999999987
No 222
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=97.34 E-value=0.00079 Score=61.57 Aligned_cols=78 Identities=15% Similarity=0.082 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCC-cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCC
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGAD-PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMD 171 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~-~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~ 171 (316)
+.+++|+.+.++|++.+|+-..... ..+...+ +.++ .++|++.-|||+ .++++++++.|||.|.+|.. .+
T Consensus 153 ~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I-~~i~-~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~--~~---- 224 (233)
T cd02911 153 DDEELARLIEKAGADIIHVDAMDPGNHADLKKI-RDIS-TELFIIGNNSVTTIESAKEMFSYGADMVSVARA--SL---- 224 (233)
T ss_pred CHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHH-HHhc-CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC--CC----
Confidence 6788999999999999888433222 2233333 3333 679999999998 59999999999999999999 54
Q ss_pred HHHHHHHH
Q 021156 172 LERLKDLV 179 (316)
Q Consensus 172 ~eli~ei~ 179 (316)
|.+++++.
T Consensus 225 p~~~~~~~ 232 (233)
T cd02911 225 PENIEWLV 232 (233)
T ss_pred chHHHHhh
Confidence 87887763
No 223
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.33 E-value=0.016 Score=52.66 Aligned_cols=171 Identities=17% Similarity=0.092 Sum_probs=110.5
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-----hCCCcEEEecCC-C-HHHHHHHHHcCCCEEEeCCeeec
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-----AYPGGLQVGGGI-N-SDNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-----~~~~pl~vGGGI-r-~e~~~~~l~~Gad~VVigt~~~~ 166 (316)
+..++++.+.+.|++-+-+..= .++....++.++ +.+ .+.+|.|- . .++++.+.++||+.+|-=..
T Consensus 28 ~a~~~~~al~~gGi~~iEiT~~---tp~a~~~i~~l~~~~~~~~p-~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~~--- 100 (222)
T PRK07114 28 VAKKVIKACYDGGARVFEFTNR---GDFAHEVFAELVKYAAKELP-GMILGVGSIVDAATAALYIQLGANFIVTPLF--- 100 (222)
T ss_pred HHHHHHHHHHHCCCCEEEEeCC---CCcHHHHHHHHHHHHHhhCC-CeEEeeEeCcCHHHHHHHHHcCCCEEECCCC---
Confidence 5667888888888775444432 222333333332 222 37888776 4 59999999999998764331
Q ss_pred CCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCH
Q 021156 167 NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDD 246 (316)
Q Consensus 167 ~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~ 246 (316)
++++++... +++ ++.+- | - .++ ..+....+.|++.+=+...+ .-| .
T Consensus 101 ----~~~v~~~~~-~~~----i~~iP-----G--------~-----~Tp-sEi~~A~~~Ga~~vKlFPA~----~~G--~ 146 (222)
T PRK07114 101 ----NPDIAKVCN-RRK----VPYSP-----G--------C-----GSL-SEIGYAEELGCEIVKLFPGS----VYG--P 146 (222)
T ss_pred ----CHHHHHHHH-HcC----CCEeC-----C--------C-----CCH-HHHHHHHHCCCCEEEECccc----ccC--H
Confidence 377765554 443 22221 1 1 123 45667778999988666633 124 5
Q ss_pred HHHHHHhhc-CCCcEEEEeCCCC-HHHHHHHHHhCCCcCEEEEccchhhccCcc----cHHHHHHHHHh
Q 021156 247 ELVALLGKY-SPIPVTYAGGVTT-MADLEKIKVAGIGRVDVTVGSALDIFGGNL----AYKDVVAWHAQ 309 (316)
Q Consensus 247 eli~~l~~~-~~iPVIasGGI~s-~eDi~~l~~~G~g~~gVivG~Al~~~~g~~----~~~~~~~~~~~ 309 (316)
..++.+..- .++|++..|||.. .+++.+.++.| +.+|-+|+.+ +...+ .++++.+.+++
T Consensus 147 ~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aG--a~avg~Gs~L--~~~~~~~~~~~~~i~~~a~~ 211 (222)
T PRK07114 147 GFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAG--VTCVGMGSKL--IPKEALAAKDYAGIEQKVRE 211 (222)
T ss_pred HHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCC--CEEEEEChhh--cCccccccccHHHHHHHHHH
Confidence 678888763 5799999999996 69999999988 8999999999 75332 34555554433
No 224
>PRK08185 hypothetical protein; Provisional
Probab=97.30 E-value=0.017 Score=54.44 Aligned_cols=151 Identities=17% Similarity=0.217 Sum_probs=96.6
Q ss_pred HHhCCCcE--EEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHH---HHhcCceEEEeeeeeecCCeeEEE
Q 021156 129 LHAYPGGL--QVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLV---RVVGKQRLVLDLSCRKKDGKYAIV 203 (316)
Q Consensus 129 v~~~~~pl--~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~---~~~G~~~IvvslD~k~~~g~~~v~ 203 (316)
.++..+|+ -.+=|-..++++++++.|.+.|.+....+.. +=|.++.++++ +.+| +-+..-+ | .+.
T Consensus 64 a~~~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~l~~-eeNi~~t~~vv~~a~~~g---v~vE~El----G--~vg 133 (283)
T PRK08185 64 AKRSPVPFVIHLDHGATIEDVMRAIRCGFTSVMIDGSLLPY-EENVALTKEVVELAHKVG---VSVEGEL----G--TIG 133 (283)
T ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCH-HHHHHHHHHHHHHHHHcC---CeEEEEE----e--ecc
Confidence 33455554 4555666799999999999999997665532 00244555555 4444 2222221 1 110
Q ss_pred e-----CCcceeccc-CHHHHHHHHHHcCCCEEEE-----eecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCH-HH
Q 021156 204 T-----DRWQKFSDV-YLDERVLDFLASYADEFLV-----HGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTM-AD 271 (316)
Q Consensus 204 ~-----~gw~~~~~~-~~~e~a~~~~~~Ga~~ilv-----tdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~-eD 271 (316)
. ..+...... ++.+..+...+.|++.+.+ |.+-..+...+.|++.++++++.+++|+.+-||.+.+ ++
T Consensus 134 ~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~e~ 213 (283)
T PRK08185 134 NTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVDIPLVLHGGSANPDAE 213 (283)
T ss_pred CcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhCCCEEEECCCCCCHHH
Confidence 0 001110002 4544444444459999877 7776555445679999999999999999999999654 66
Q ss_pred HHHHHHhCCCcCEEEEccch
Q 021156 272 LEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 272 i~~l~~~G~g~~gVivG~Al 291 (316)
++++.+.| +..+=|++.+
T Consensus 214 ~~~ai~~G--I~KiNi~T~l 231 (283)
T PRK08185 214 IAESVQLG--VGKINISSDM 231 (283)
T ss_pred HHHHHHCC--CeEEEeChHH
Confidence 78888888 9999999877
No 225
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.27 E-value=0.0027 Score=59.39 Aligned_cols=90 Identities=13% Similarity=0.206 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhcC-ceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHH
Q 021156 172 LERLKDLVRVVGK-QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVA 250 (316)
Q Consensus 172 ~eli~ei~~~~G~-~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~ 250 (316)
.+.++++.++++. .+|.+ ++. ..|.++++.+.|++.|. +..++.+.++
T Consensus 169 ~~~v~~~k~~~p~~~~I~V--Ev~--------------------tleea~~A~~~GaDiI~---------LDn~~~e~l~ 217 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEI--ECE--------------------SLEEAKNAMNAGADIVM---------CDNMSVEEIK 217 (273)
T ss_pred HHHHHHHHHhCCCCceEEE--EeC--------------------CHHHHHHHHHcCCCEEE---------ECCCCHHHHH
Confidence 5678888888853 34433 332 24778888899999765 2245778777
Q ss_pred HHhhc-----CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156 251 LLGKY-----SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN 297 (316)
Q Consensus 251 ~l~~~-----~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~ 297 (316)
++.+. .++.++++||| +++.+.++.+.| ++.+.+|+.. |..+
T Consensus 218 ~~v~~~~~~~~~~~ieAsGgI-t~~ni~~ya~~G--vD~IsvG~l~--~sa~ 264 (273)
T PRK05848 218 EVVAYRNANYPHVLLEASGNI-TLENINAYAKSG--VDAISSGSLI--HQAT 264 (273)
T ss_pred HHHHHhhccCCCeEEEEECCC-CHHHHHHHHHcC--CCEEEeChhh--cCCC
Confidence 77654 25569999999 999999999998 9999999998 7443
No 226
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=97.21 E-value=0.0025 Score=62.31 Aligned_cols=72 Identities=19% Similarity=0.226 Sum_probs=57.8
Q ss_pred HHHHHHHHHcCCCEEEEeecCCcccc--CCC-CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccc
Q 021156 216 DERVLDFLASYADEFLVHGVDVEGKK--LGI-DDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA 290 (316)
Q Consensus 216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~--~G~-d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~A 290 (316)
.+.++.+.+.|++.|++..- .|+. .++ -.+.+.++++.+ ++||++.|||++-.|+.+++.+| +++|.+|++
T Consensus 264 ~~dA~~a~~~G~d~I~vsnh--GGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLG--A~~v~iGr~ 339 (383)
T cd03332 264 PDDARRAVEAGVDGVVVSNH--GGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALG--AKAVLIGRP 339 (383)
T ss_pred HHHHHHHHHCCCCEEEEcCC--CCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcC--CCEEEEcHH
Confidence 47888999999999987431 2221 233 467788887655 59999999999999999999999 999999998
Q ss_pred h
Q 021156 291 L 291 (316)
Q Consensus 291 l 291 (316)
+
T Consensus 340 ~ 340 (383)
T cd03332 340 Y 340 (383)
T ss_pred H
Confidence 8
No 227
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.20 E-value=0.00077 Score=64.17 Aligned_cols=83 Identities=17% Similarity=0.095 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCc------------ccHHHHHHHH-HhCCCcEEEecCCC-HHHHHHHHHc-CCCEE
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADP------------LSKAAAIEAL-HAYPGGLQVGGGIN-SDNSLSYIEE-GATHV 158 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~------------~~~~~i~~~v-~~~~~pl~vGGGIr-~e~~~~~l~~-Gad~V 158 (316)
+.+++++.+.+.|++.+|+..-.... .......+.+ +.+++||.++|||+ .++++++++. |||.|
T Consensus 229 e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V 308 (327)
T cd02803 229 EAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLV 308 (327)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCee
Confidence 46678999999999988875443221 1112233334 45789999999998 5999999998 79999
Q ss_pred EeCCeeecCCCCCHHHHHHHHH
Q 021156 159 IVTSYVFNNGQMDLERLKDLVR 180 (316)
Q Consensus 159 Vigt~~~~~~~~~~eli~ei~~ 180 (316)
.+|+.++.| |+++.++.+
T Consensus 309 ~igR~~lad----P~l~~k~~~ 326 (327)
T cd02803 309 ALGRALLAD----PDLPNKARE 326 (327)
T ss_pred eecHHHHhC----ccHHHHHhc
Confidence 999999998 999888753
No 228
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=97.20 E-value=0.0017 Score=60.26 Aligned_cols=74 Identities=19% Similarity=0.122 Sum_probs=51.5
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCCc-------ccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCe
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGADP-------LSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSY 163 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~~-------~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~ 163 (316)
..|.+.++.+.+..-..++++-..+.. ......++.++ ..+.|+.+||||+ .++++++.++|||.||+||+
T Consensus 150 ~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSa 229 (256)
T TIGR00262 150 NADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGSA 229 (256)
T ss_pred CCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECHH
Confidence 345566666666543456666655321 12233344444 3578999999998 69999999999999999999
Q ss_pred eec
Q 021156 164 VFN 166 (316)
Q Consensus 164 ~~~ 166 (316)
.++
T Consensus 230 iv~ 232 (256)
T TIGR00262 230 IVK 232 (256)
T ss_pred HHH
Confidence 876
No 229
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=97.20 E-value=0.0081 Score=55.91 Aligned_cols=69 Identities=25% Similarity=0.210 Sum_probs=53.8
Q ss_pred HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCC--CHHHHHHHH----HhCCCcCEEEEccc
Q 021156 217 ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVT--TMADLEKIK----VAGIGRVDVTVGSA 290 (316)
Q Consensus 217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~--s~eDi~~l~----~~G~g~~gVivG~A 290 (316)
..++.+.+.|++.+= ++ +. .+.+.++++.+.+++||.++|||+ +.+++.+.. +.| ++|+.+|++
T Consensus 164 ~a~~~a~e~GAD~vK-t~------~~-~~~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aG--A~Gis~gr~ 233 (267)
T PRK07226 164 HAARVAAELGADIVK-TN------YT-GDPESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAG--AAGVAVGRN 233 (267)
T ss_pred HHHHHHHHHCCCEEe-eC------CC-CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcC--CcEEehhhh
Confidence 446778889999762 22 11 378899999887789999999999 888777765 777 899999999
Q ss_pred hhhccCc
Q 021156 291 LDIFGGN 297 (316)
Q Consensus 291 l~~~~g~ 297 (316)
+ +..+
T Consensus 234 i--~~~~ 238 (267)
T PRK07226 234 V--FQHE 238 (267)
T ss_pred h--hcCC
Confidence 9 6543
No 230
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=97.19 E-value=0.003 Score=56.70 Aligned_cols=75 Identities=13% Similarity=-0.048 Sum_probs=62.3
Q ss_pred ccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 212 DVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 212 ~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
..++.++++.+.+.|++.+ |-.+.++... -+.+.++.+++.+++||+..|++.+.+++..+.+.| +++|+++...
T Consensus 30 ~~~~~~~A~~~~~~GA~~l--~v~~~~~~~~-g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~G--ad~v~l~~~~ 104 (217)
T cd00331 30 DFDPVEIAKAYEKAGAAAI--SVLTEPKYFQ-GSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAG--ADAVLLIVAA 104 (217)
T ss_pred CCCHHHHHHHHHHcCCCEE--EEEeCccccC-CCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcC--CCEEEEeecc
Confidence 3479999999999999987 5555555544 345677777777799999999999999999999999 9999999887
No 231
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=97.18 E-value=0.031 Score=50.32 Aligned_cols=170 Identities=18% Similarity=0.236 Sum_probs=104.9
Q ss_pred HHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCe--eecCCC-CCHH
Q 021156 98 FANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQVGGGINSDNSLSYIEEGATHVIVTSY--VFNNGQ-MDLE 173 (316)
Q Consensus 98 ~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~--~~~~~~-~~~e 173 (316)
+++....+..-+-.++|+-++ +.+.+.++ ..++|+.|.+ +..+..-...++|||.|=||+. ++..|+ +..+
T Consensus 29 V~~i~~AA~~ggAt~vDIAad----p~LV~~~~~~s~lPICVSa-Vep~~f~~aV~AGAdliEIGNfDsFY~qGr~f~a~ 103 (242)
T PF04481_consen 29 VAAIVKAAEIGGATFVDIAAD----PELVKLAKSLSNLPICVSA-VEPELFVAAVKAGADLIEIGNFDSFYAQGRRFSAE 103 (242)
T ss_pred HHHHHHHHHccCCceEEecCC----HHHHHHHHHhCCCCeEeec-CCHHHHHHHHHhCCCEEEecchHHHHhcCCeecHH
Confidence 333333333334447888553 23445555 4789999975 6678888999999999999974 344453 4555
Q ss_pred HHHHHHHHhcC--ceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC----CHH
Q 021156 174 RLKDLVRVVGK--QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI----DDE 247 (316)
Q Consensus 174 li~ei~~~~G~--~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~----d~e 247 (316)
.+-++.++... -.+.+|+.+- + .+.. ..-.+++.++++.|++-|= | .-|+-.-| -..
T Consensus 104 eVL~Lt~~tR~LLP~~~LsVTVP--H---iL~l--------d~Qv~LA~~L~~~GaDiIQ-T---EGgtss~p~~~g~lg 166 (242)
T PF04481_consen 104 EVLALTRETRSLLPDITLSVTVP--H---ILPL--------DQQVQLAEDLVKAGADIIQ-T---EGGTSSKPTSPGILG 166 (242)
T ss_pred HHHHHHHHHHHhCCCCceEEecC--c---cccH--------HHHHHHHHHHHHhCCcEEE-c---CCCCCCCCCCcchHH
Confidence 55555544310 1355666553 1 1110 1245789999999999652 1 11221111 222
Q ss_pred HHH----------HHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchh
Q 021156 248 LVA----------LLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALD 292 (316)
Q Consensus 248 li~----------~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~ 292 (316)
+++ .+.+.+++||+.+-|+++.- .--.+..| +.||=||+|+-
T Consensus 167 lIekaapTLAaay~ISr~v~iPVlcASGlS~vT-~PmAiaaG--AsGVGVGSavn 218 (242)
T PF04481_consen 167 LIEKAAPTLAAAYAISRAVSIPVLCASGLSAVT-APMAIAAG--ASGVGVGSAVN 218 (242)
T ss_pred HHHHHhHHHHHHHHHHhccCCceEeccCcchhh-HHHHHHcC--CcccchhHHhh
Confidence 333 45567899999999999874 45555567 89999999993
No 232
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=97.17 E-value=0.0017 Score=61.95 Aligned_cols=85 Identities=12% Similarity=0.072 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCC-----cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHH-HcCCCEEEeCCeeec
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGAD-----PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYI-EEGATHVIVTSYVFN 166 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~-----~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l-~~Gad~VVigt~~~~ 166 (316)
+..++++.+.+.|++.+++---... +.+.+.+.++.+.+++|++.-|||+ .+++++++ ..|||.|.+|..++.
T Consensus 148 ~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~ 227 (319)
T TIGR00737 148 NAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALG 227 (319)
T ss_pred hHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhh
Confidence 4678999999999998876422111 1234434444446889999999998 59999999 589999999999999
Q ss_pred CCCCCHHHHHHHHHHh
Q 021156 167 NGQMDLERLKDLVRVV 182 (316)
Q Consensus 167 ~~~~~~eli~ei~~~~ 182 (316)
| |.++.++.+.+
T Consensus 228 ~----P~l~~~~~~~~ 239 (319)
T TIGR00737 228 N----PWLFRQIEQYL 239 (319)
T ss_pred C----ChHHHHHHHHH
Confidence 7 99999987665
No 233
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.15 E-value=0.012 Score=55.37 Aligned_cols=152 Identities=16% Similarity=0.247 Sum_probs=91.8
Q ss_pred HHHhCC-CcEEEe--cCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHH---HHhcCceEEEeeeeeecCCeeE
Q 021156 128 ALHAYP-GGLQVG--GGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLV---RVVGKQRLVLDLSCRKKDGKYA 201 (316)
Q Consensus 128 ~v~~~~-~pl~vG--GGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~---~~~G~~~IvvslD~k~~~g~~~ 201 (316)
..++.+ +|+.+= -|-..+.+++.++.|++.|.+........+ +.+..+++. +.+|- .+-..+..- +|+..
T Consensus 68 ~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l~~~e-ni~~t~~v~~~a~~~gv-~Ve~ElG~~--gg~ed 143 (282)
T TIGR01859 68 LIERMSIVPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHLPFEE-NLALTKKVVEIAHAKGV-SVEAELGTL--GGIED 143 (282)
T ss_pred HHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCCCHHH-HHHHHHHHHHHHHHcCC-EEEEeeCCC--cCccc
Confidence 344556 776654 343468899999999999999766554200 133444444 44541 111111110 11000
Q ss_pred EEeCCcceecccCHHHHHHHHHH-cCCCEEEE-----eecCCccccCCCCHHHHHHHhhcCCCcEEEEe--CCCCHHHHH
Q 021156 202 IVTDRWQKFSDVYLDERVLDFLA-SYADEFLV-----HGVDVEGKKLGIDDELVALLGKYSPIPVTYAG--GVTTMADLE 273 (316)
Q Consensus 202 v~~~gw~~~~~~~~~e~a~~~~~-~Ga~~ilv-----tdi~~dG~~~G~d~eli~~l~~~~~iPVIasG--GI~s~eDi~ 273 (316)
...+ ...+--++ |.++++.+ .|++.+.+ |.+.. + ....|++.++++++.+++|+.+-| |+.. +++.
T Consensus 144 -~~~g-~~~~~t~~-eea~~f~~~tgvD~Lavs~Gt~hg~~~-~-~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~-e~i~ 217 (282)
T TIGR01859 144 -GVDE-KEAELADP-DEAEQFVKETGVDYLAAAIGTSHGKYK-G-EPGLDFERLKEIKELTNIPLVLHGASGIPE-EQIK 217 (282)
T ss_pred -cccc-cccccCCH-HHHHHHHHHHCcCEEeeccCccccccC-C-CCccCHHHHHHHHHHhCCCEEEECCCCCCH-HHHH
Confidence 0001 00111145 44555554 89998763 33221 1 133599999999999999999999 8765 6799
Q ss_pred HHHHhCCCcCEEEEccch
Q 021156 274 KIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 274 ~l~~~G~g~~gVivG~Al 291 (316)
++.+.| +.++-|++.+
T Consensus 218 ~~i~~G--i~kiNv~T~l 233 (282)
T TIGR01859 218 KAIKLG--IAKINIDTDC 233 (282)
T ss_pred HHHHcC--CCEEEECcHH
Confidence 999998 9999999988
No 234
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=97.14 E-value=0.0074 Score=55.81 Aligned_cols=185 Identities=15% Similarity=0.032 Sum_probs=101.3
Q ss_pred ccCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHH-HhCCCcEEEecCCC---------H-HHHHHHHHcCCCEEEe
Q 021156 92 DKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEAL-HAYPGGLQVGGGIN---------S-DNSLSYIEEGATHVIV 160 (316)
Q Consensus 92 ~~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v-~~~~~pl~vGGGIr---------~-e~~~~~l~~Gad~VVi 160 (316)
..+|.++.+...+.+++.+.+---- -....+.. ..+.+-+.+++|.. . ..++.+++.||+-|-+
T Consensus 35 ~~~~~~~~~~a~~~~~~~v~~~p~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~ 109 (258)
T TIGR01949 35 LVDIRKTVNEVAEGGADAVLLHKGI-----VRRGHRGYGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSI 109 (258)
T ss_pred cCCHHHHHHHHHhcCCCEEEeCcch-----hhhcccccCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEE
Confidence 3578888887777776654332100 00000111 12333345555542 1 3488999999996655
Q ss_pred CCe--eecCCCCCHHHHHHHHH---HhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeec
Q 021156 161 TSY--VFNNGQMDLERLKDLVR---VVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGV 235 (316)
Q Consensus 161 gt~--~~~~~~~~~eli~ei~~---~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi 235 (316)
-.. .....++ .+.+.++.+ .+|- .+++-+.. +|. .... . +.-.....++.+.+.|++.+-+ +
T Consensus 110 ~~~~g~~~~~~~-~~~~~~i~~~~~~~g~-~liv~~~~---~Gv---h~~~-~--~~~~~~~~~~~a~~~GADyikt-~- 176 (258)
T TIGR01949 110 HVNVGSDTEWEQ-IRDLGMIAEICDDWGV-PLLAMMYP---RGP---HIDD-R--DPELVAHAARLGAELGADIVKT-P- 176 (258)
T ss_pred EEecCCchHHHH-HHHHHHHHHHHHHcCC-CEEEEEec---cCc---cccc-c--cHHHHHHHHHHHHHHCCCEEec-c-
Confidence 221 0111000 233444443 3442 23332222 221 0111 1 1111223357788899997653 2
Q ss_pred CCccccCCCCHHHHHHHhhcCCCcEEEEeCCC--C----HHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156 236 DVEGKKLGIDDELVALLGKYSPIPVTYAGGVT--T----MADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA 305 (316)
Q Consensus 236 ~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~--s----~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~ 305 (316)
+ ..+.+.++++.+.+++||.+.||++ + .+.+.++.+.| ++|+.+|+++ +..+ ++.+..+
T Consensus 177 -----~-~~~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aG--a~Gia~g~~i--~~~~-dp~~~~~ 241 (258)
T TIGR01949 177 -----Y-TGDIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAG--AAGVAVGRNI--FQHD-DPVGITK 241 (258)
T ss_pred -----C-CCCHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcC--CcEEehhhHh--hcCC-CHHHHHH
Confidence 1 2378999999988899999999999 5 55566666888 8999999999 6543 3444433
No 235
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=97.13 E-value=0.0051 Score=59.45 Aligned_cols=76 Identities=20% Similarity=0.158 Sum_probs=58.2
Q ss_pred HHHHHHHHHcCCCEEEEeecCCcccc---CCCCHHHHHHHhhc-----CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEE
Q 021156 216 DERVLDFLASYADEFLVHGVDVEGKK---LGIDDELVALLGKY-----SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTV 287 (316)
Q Consensus 216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~---~G~d~eli~~l~~~-----~~iPVIasGGI~s~eDi~~l~~~G~g~~gViv 287 (316)
.+.++.+.+.|++.|++-+ .-|+. ..+-.+.+.++.+. -++|||++|||++-.|+.+++.+| +++|.|
T Consensus 224 ~~dA~~a~~~G~d~I~vsn--hgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLG--A~aV~i 299 (344)
T cd02922 224 VEDAVLAAEYGVDGIVLSN--HGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLG--AKAVGL 299 (344)
T ss_pred HHHHHHHHHcCCCEEEEEC--CCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcC--CCEEEE
Confidence 5788999999999998744 22442 12345556565542 258999999999999999999999 999999
Q ss_pred ccchhhccCc
Q 021156 288 GSALDIFGGN 297 (316)
Q Consensus 288 G~Al~~~~g~ 297 (316)
|+++ +.+.
T Consensus 300 G~~~--l~~l 307 (344)
T cd02922 300 GRPF--LYAL 307 (344)
T ss_pred CHHH--HHHH
Confidence 9999 6544
No 236
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=97.13 E-value=0.0026 Score=61.65 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCCEEEEeecCCcccc-------C-------------CC-CHHHHHHHhhc-CCCcEEEEeCCCCHHHHH
Q 021156 216 DERVLDFLASYADEFLVHGVDVEGKK-------L-------------GI-DDELVALLGKY-SPIPVTYAGGVTTMADLE 273 (316)
Q Consensus 216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~-------~-------------G~-d~eli~~l~~~-~~iPVIasGGI~s~eDi~ 273 (316)
.+.++.+.+.|++.|.+... -||. + |. -.+.+.++++. .++|||++|||++..|+.
T Consensus 200 ~~~a~~l~~~Gvd~I~Vsg~--GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~~~~dv~ 277 (352)
T PRK05437 200 KETAKRLADAGVKAIDVAGA--GGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIRNGLDIA 277 (352)
T ss_pred HHHHHHHHHcCCCEEEECCC--CCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCCCHHHHH
Confidence 58899999999999988653 2321 1 11 12356666665 589999999999999999
Q ss_pred HHHHhCCCcCEEEEccch
Q 021156 274 KIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 274 ~l~~~G~g~~gVivG~Al 291 (316)
+++.+| +++|.+|+++
T Consensus 278 k~l~~G--Ad~v~ig~~~ 293 (352)
T PRK05437 278 KALALG--ADAVGMAGPF 293 (352)
T ss_pred HHHHcC--CCEEEEhHHH
Confidence 999998 9999999998
No 237
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=97.12 E-value=0.0036 Score=57.48 Aligned_cols=76 Identities=16% Similarity=0.240 Sum_probs=56.3
Q ss_pred ecCCccCHHHHHHHHHHcCCCcceEEEecCC-----cccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcCCCEEEe
Q 021156 88 NFESDKSAAEFANLYKEDGLTGGHAIMLGAD-----PLSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEGATHVIV 160 (316)
Q Consensus 88 ~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~-----~~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVi 160 (316)
+|. ++||+ +|+++.+.|+. -+.-|-+- ...++..++++. ..++|+++|+||. .+|+...++.|||-|.+
T Consensus 142 PY~-~~D~v-~a~rLed~Gc~--aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~ 217 (267)
T CHL00162 142 PYI-NADPM-LAKHLEDIGCA--TVMPLGSPIGSGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLL 217 (267)
T ss_pred ecC-CCCHH-HHHHHHHcCCe--EEeeccCcccCCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEee
Confidence 454 35787 88888888865 23334321 234555556654 5789999999997 59999999999999999
Q ss_pred CCeeecC
Q 021156 161 TSYVFNN 167 (316)
Q Consensus 161 gt~~~~~ 167 (316)
+|...+.
T Consensus 218 nSaIakA 224 (267)
T CHL00162 218 NTAVAQA 224 (267)
T ss_pred cceeecC
Confidence 9999864
No 238
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=97.10 E-value=0.0039 Score=57.71 Aligned_cols=89 Identities=24% Similarity=0.281 Sum_probs=65.8
Q ss_pred cCHHHHHHHHHH-cCCCcceEEEecCCcc-cHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCC--
Q 021156 93 KSAAEFANLYKE-DGLTGGHAIMLGADPL-SKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNG-- 168 (316)
Q Consensus 93 ~~p~e~a~~~~~-~G~~~l~lvDLda~~~-~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~-- 168 (316)
.+..+.++...+ .++|.+.+---..+.+ +.+.+.+..+.++.|+.+|+|++.+.+.+++.. ||-+||||.+-++|
T Consensus 158 ~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~~PVlvGSGvt~~Ni~~~l~~-ADG~IVGS~~K~~G~~ 236 (254)
T PF03437_consen 158 RDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAVPVPVLVGSGVTPENIAEYLSY-ADGAIVGSYFKKDGKW 236 (254)
T ss_pred CCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCCCCEEEecCCCHHHHHHHHHh-CCEEEEeeeeeeCCEe
Confidence 355666666544 4688777665554433 444444444457799999999999999999976 89999999988776
Q ss_pred --CCCHHHHHHHHHHh
Q 021156 169 --QMDLERLKDLVRVV 182 (316)
Q Consensus 169 --~~~~eli~ei~~~~ 182 (316)
.+|++.++++.+..
T Consensus 237 ~n~VD~~Rv~~fm~~v 252 (254)
T PF03437_consen 237 ENPVDPERVRRFMEAV 252 (254)
T ss_pred CCcCCHHHHHHHHHHh
Confidence 47999999988764
No 239
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=97.07 E-value=0.002 Score=61.00 Aligned_cols=86 Identities=27% Similarity=0.282 Sum_probs=63.9
Q ss_pred cCHHHHHHHHHHcCCCcceEE---------EecCC-----------------ccc----HHHHHHHHHhC--CCcEEEec
Q 021156 93 KSAAEFANLYKEDGLTGGHAI---------MLGAD-----------------PLS----KAAAIEALHAY--PGGLQVGG 140 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lv---------DLda~-----------------~~~----~~~i~~~v~~~--~~pl~vGG 140 (316)
.+..++|+...++|++++.++ |++.. +.. ...+.++.+.+ .+||+.-|
T Consensus 180 ~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~G 259 (299)
T cd02940 180 TDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIG 259 (299)
T ss_pred hhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEEC
Confidence 367789999999999999863 32211 011 23333333456 79999999
Q ss_pred CCCH-HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHH
Q 021156 141 GINS-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRV 181 (316)
Q Consensus 141 GIr~-e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~ 181 (316)
||++ +|+.+++.+||+.|-++|+++.. .|+.+.++.+.
T Consensus 260 GI~~~~da~~~l~aGA~~V~i~ta~~~~---g~~~~~~i~~~ 298 (299)
T cd02940 260 GIESWEDAAEFLLLGASVVQVCTAVMNQ---GFTIVDDMCTG 298 (299)
T ss_pred CCCCHHHHHHHHHcCCChheEceeeccc---CCcHHHHHhhh
Confidence 9984 99999999999999999999885 28888887653
No 240
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=97.06 E-value=0.0057 Score=56.72 Aligned_cols=89 Identities=19% Similarity=0.152 Sum_probs=67.4
Q ss_pred cCHHHHHHHHHHcC-CCcceEEEecCCc-ccHHHHHHHHHhC-CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCC-
Q 021156 93 KSAAEFANLYKEDG-LTGGHAIMLGADP-LSKAAAIEALHAY-PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNG- 168 (316)
Q Consensus 93 ~~p~e~a~~~~~~G-~~~l~lvDLda~~-~~~~~i~~~v~~~-~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~- 168 (316)
.+..+.++.....+ +|++.+-=...+. .+.+.+.+..+.. +.|+.+|||++.+.+.++++. ||-+++||.+.++|
T Consensus 157 ~~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~~~~~~PvllggGvt~eNv~e~l~~-adGviVgS~~K~~G~ 235 (257)
T TIGR00259 157 RDLESIALDTVERGLADAVILSGKTTGTEVDLELLKLAKETVKDTPVLAGSGVNLENVEELLSI-ADGVIVATTIKKDGV 235 (257)
T ss_pred CCHHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHhccCCCeEEEECCCCHHHHHHHHhh-CCEEEECCCcccCCc
Confidence 35667888888777 8877665544333 3444444433323 589999999999999999987 99999999998777
Q ss_pred ---CCCHHHHHHHHHHh
Q 021156 169 ---QMDLERLKDLVRVV 182 (316)
Q Consensus 169 ---~~~~eli~ei~~~~ 182 (316)
..|++.++++.+..
T Consensus 236 ~~n~~D~~rV~~Fm~~v 252 (257)
T TIGR00259 236 FNNFVDQARVSQFVEKV 252 (257)
T ss_pred cCCCcCHHHHHHHHHHH
Confidence 57899999988765
No 241
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=97.05 E-value=0.027 Score=50.21 Aligned_cols=159 Identities=25% Similarity=0.369 Sum_probs=101.0
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEEEecCC-C-HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQVGGGI-N-SDNSLSYIEEGATHVIVTSYVFNNGQ 169 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~vGGGI-r-~e~~~~~l~~Gad~VVigt~~~~~~~ 169 (316)
.+..++++.+.+.|++-+-+.. ..++..++++.++ +.+ -+.+|.|- . .++++++.++||+.+|-=..
T Consensus 20 ~~a~~~~~al~~gGi~~iEiT~---~t~~a~~~I~~l~~~~p-~~~vGAGTV~~~e~a~~a~~aGA~FivSP~~------ 89 (196)
T PF01081_consen 20 EDAVPIAEALIEGGIRAIEITL---RTPNALEAIEALRKEFP-DLLVGAGTVLTAEQAEAAIAAGAQFIVSPGF------ 89 (196)
T ss_dssp GGHHHHHHHHHHTT--EEEEET---TSTTHHHHHHHHHHHHT-TSEEEEES--SHHHHHHHHHHT-SEEEESS-------
T ss_pred HHHHHHHHHHHHCCCCEEEEec---CCccHHHHHHHHHHHCC-CCeeEEEeccCHHHHHHHHHcCCCEEECCCC------
Confidence 4677899999988866444333 2234455555554 444 36677665 4 59999999999999875331
Q ss_pred CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHH
Q 021156 170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELV 249 (316)
Q Consensus 170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli 249 (316)
+++.++... +++ ++.+- | + .++ ..+..+.+.|++.+=+...+.-| | ...+
T Consensus 90 -~~~v~~~~~-~~~----i~~iP-----G---~----------~Tp-tEi~~A~~~G~~~vK~FPA~~~G---G--~~~i 139 (196)
T PF01081_consen 90 -DPEVIEYAR-EYG----IPYIP-----G---V----------MTP-TEIMQALEAGADIVKLFPAGALG---G--PSYI 139 (196)
T ss_dssp --HHHHHHHH-HHT----SEEEE-----E---E----------SSH-HHHHHHHHTT-SEEEETTTTTTT---H--HHHH
T ss_pred -CHHHHHHHH-HcC----CcccC-----C---c----------CCH-HHHHHHHHCCCCEEEEecchhcC---c--HHHH
Confidence 266665554 453 12221 1 0 123 34556778999988777765443 2 3578
Q ss_pred HHHhh-cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccC
Q 021156 250 ALLGK-YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGG 296 (316)
Q Consensus 250 ~~l~~-~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g 296 (316)
+.++. ..++|++..|||.. +++.+.++.| +.+|.+|+.+ +..
T Consensus 140 k~l~~p~p~~~~~ptGGV~~-~N~~~~l~ag--~~~vg~Gs~L--~~~ 182 (196)
T PF01081_consen 140 KALRGPFPDLPFMPTGGVNP-DNLAEYLKAG--AVAVGGGSWL--FPK 182 (196)
T ss_dssp HHHHTTTTT-EEEEBSS--T-TTHHHHHTST--TBSEEEESGG--GSH
T ss_pred HHHhccCCCCeEEEcCCCCH-HHHHHHHhCC--CEEEEECchh--cCH
Confidence 88876 45799999999987 7999999998 8899999999 754
No 242
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=97.04 E-value=0.0046 Score=55.68 Aligned_cols=84 Identities=19% Similarity=0.055 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHcCCCcceE--EEecCC-----cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeee
Q 021156 94 SAAEFANLYKEDGLTGGHA--IMLGAD-----PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVF 165 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~l--vDLda~-----~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~ 165 (316)
++. .++...+.|++.+.+ ..+.+. ......+.++.+.+++|+.++|||+ .++++++++.||+-|++||.+.
T Consensus 128 t~e-e~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~ 206 (221)
T PRK01130 128 TLE-EGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKKALELGAHAVVVGGAIT 206 (221)
T ss_pred CHH-HHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhc
Confidence 454 557777889886533 123221 1223334444445689999999998 6999999999999999999987
Q ss_pred cCCCCCHHHHHHHHHHh
Q 021156 166 NNGQMDLERLKDLVRVV 182 (316)
Q Consensus 166 ~~~~~~~eli~ei~~~~ 182 (316)
+. .+..+++.+.+
T Consensus 207 ~~----~~~~~~~~~~~ 219 (221)
T PRK01130 207 RP----EEITKWFVDAL 219 (221)
T ss_pred CC----HHHHHHHHHHh
Confidence 74 55555555544
No 243
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=97.02 E-value=0.0016 Score=60.57 Aligned_cols=74 Identities=11% Similarity=-0.008 Sum_probs=52.1
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCCc-------ccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCe
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGADP-------LSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSY 163 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~~-------~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~ 163 (316)
+.|.+..+.+.+..-..+|++-..+.. ......++.++ ..+.|+.||+||+ .|+++++.+.|||-||+||+
T Consensus 154 tT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSa 233 (263)
T CHL00200 154 TSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGSA 233 (263)
T ss_pred CCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECHH
Confidence 345566666666543455666555431 12334455555 4689999999999 59999999999999999999
Q ss_pred eec
Q 021156 164 VFN 166 (316)
Q Consensus 164 ~~~ 166 (316)
+.+
T Consensus 234 lv~ 236 (263)
T CHL00200 234 CVQ 236 (263)
T ss_pred HHH
Confidence 853
No 244
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.02 E-value=0.063 Score=53.26 Aligned_cols=169 Identities=14% Similarity=0.067 Sum_probs=108.1
Q ss_pred HHHHHHHHcCCCcceEEEecCCccc----HHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCH
Q 021156 97 EFANLYKEDGLTGGHAIMLGADPLS----KAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDL 172 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvDLda~~~~----~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~ 172 (316)
+.++...+.|++.+.+=+=+..... -..+.+.++..+.++++-. ..+-+++.||+-|=+|-.-.. .
T Consensus 221 ~~ve~aL~aGv~~VQLReK~ls~~el~~la~~l~~l~~~~gv~LiIND-----~~dlAl~~gAdGVHLGQeDL~-----~ 290 (437)
T PRK12290 221 EWIERLLPLGINTVQLRIKDPQQADLEQQIIRAIALGREYNAQVFIND-----YWQLAIKHQAYGVHLGQEDLE-----E 290 (437)
T ss_pred HHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEEC-----HHHHHHHcCCCEEEcChHHcc-----h
Confidence 5677777788877666654433211 1223344455677777764 577788899999988875443 2
Q ss_pred HHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccc----cCCCCHHH
Q 021156 173 ERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGK----KLGIDDEL 248 (316)
Q Consensus 173 eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~----~~G~d~el 248 (316)
.+..+..|++ .++++.+. +. +.+.++.+.|++.+.+-.+-...+ ..+..++.
T Consensus 291 ---~~aR~ilg~~-~iIGvStH-------------------s~-eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~ 346 (437)
T PRK12290 291 ---ANLAQLTDAG-IRLGLSTH-------------------GY-YELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVR 346 (437)
T ss_pred ---hhhhhhcCCC-CEEEEecC-------------------CH-HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHH
Confidence 2233333433 34566652 23 345677788999887644422222 23346777
Q ss_pred HHHHhhcC---------CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156 249 VALLGKYS---------PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA 305 (316)
Q Consensus 249 i~~l~~~~---------~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~ 305 (316)
++++++.. ++|+++-||| +.+++.++++.| ++||.+=+|+ ..- -++++..+
T Consensus 347 L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl~aG--a~GVAVVSAI--~~A-~DP~aa~~ 406 (437)
T PRK12290 347 LALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVWQCG--VSSLAVVRAI--TLA-EDPQLVIE 406 (437)
T ss_pred HHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHHHcC--CCEEEEehHh--hcC-CCHHHHHH
Confidence 77665543 6999999999 779999999998 9999999999 643 34555544
No 245
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=97.02 E-value=0.0026 Score=57.74 Aligned_cols=86 Identities=12% Similarity=0.108 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCC---cc----cHHHHHHHHHh-----CCCcEEEecCCCHHHHHHHHHcCCCEEEeC
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGAD---PL----SKAAAIEALHA-----YPGGLQVGGGINSDNSLSYIEEGATHVIVT 161 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~---~~----~~~~i~~~v~~-----~~~pl~vGGGIr~e~~~~~l~~Gad~VVig 161 (316)
.|++..+.+... .+.+-+.=.+.+ +. ..+.+.+..+. .++|++++|||+.+.+..+.++|||.+|+|
T Consensus 117 Tp~~~i~~~l~~-~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvG 195 (220)
T PRK08883 117 TPLHHLEYIMDK-VDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVAG 195 (220)
T ss_pred CCHHHHHHHHHh-CCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEe
Confidence 566676666543 666666555533 11 12222222221 248999999999999999999999999999
Q ss_pred CeeecCCCCCHHHHHHHHHH
Q 021156 162 SYVFNNGQMDLERLKDLVRV 181 (316)
Q Consensus 162 t~~~~~~~~~~eli~ei~~~ 181 (316)
|+.++... ..+.++++.+.
T Consensus 196 SaIf~~~d-~~~~i~~l~~~ 214 (220)
T PRK08883 196 SAIFGQPD-YKAVIDEMRAE 214 (220)
T ss_pred HHHhCCCC-HHHHHHHHHHH
Confidence 99886421 12445555443
No 246
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=97.02 E-value=0.0064 Score=59.19 Aligned_cols=146 Identities=19% Similarity=0.141 Sum_probs=94.2
Q ss_pred HHHHHHcCCCEEEeCCee--------------ecC---C------CCCHHHHHHHHHHhcCce-EEEeeeeeecCCeeEE
Q 021156 147 SLSYIEEGATHVIVTSYV--------------FNN---G------QMDLERLKDLVRVVGKQR-LVLDLSCRKKDGKYAI 202 (316)
Q Consensus 147 ~~~~l~~Gad~VVigt~~--------------~~~---~------~~~~eli~ei~~~~G~~~-IvvslD~k~~~g~~~v 202 (316)
++++.++|.|-|=|-.+- ++| | ++..|.++.+.+++|.++ |.+-+... . + -
T Consensus 155 A~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~---d-~-~ 229 (363)
T COG1902 155 ARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPD---D-F-F 229 (363)
T ss_pred HHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECcc---c-c-C
Confidence 556668999988663221 111 1 345688888888898776 33333321 0 0 0
Q ss_pred EeCCcceecccCHHHHHHHHHHcC-CCEEEEeecCC--cccc----CCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHH
Q 021156 203 VTDRWQKFSDVYLDERVLDFLASY-ADEFLVHGVDV--EGKK----LGIDDELVALLGKYSPIPVTYAGGVTTMADLEKI 275 (316)
Q Consensus 203 ~~~gw~~~~~~~~~e~a~~~~~~G-a~~ilvtdi~~--dG~~----~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l 275 (316)
...||.. -+..++++.+.+.| ++.+-+..-+. .++. .|+-.+..+.++..+.+|+|+.|+|.+++.+.++
T Consensus 230 ~~~g~~~---~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~ 306 (363)
T COG1902 230 DGGGLTI---EEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEI 306 (363)
T ss_pred CCCCCCH---HHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHH
Confidence 0012221 14578899999999 68653322111 2221 2334455666777778999999999999999999
Q ss_pred HHhCCCcCEEEEccchhhccCcccHHHH
Q 021156 276 KVAGIGRVDVTVGSALDIFGGNLAYKDV 303 (316)
Q Consensus 276 ~~~G~g~~gVivG~Al~~~~g~~~~~~~ 303 (316)
++.| .+|-|-+||++ ..+|--...+
T Consensus 307 l~~g-~aDlVa~gR~~--ladP~~~~k~ 331 (363)
T COG1902 307 LASG-RADLVAMGRPF--LADPDLVLKA 331 (363)
T ss_pred HHcC-CCCEEEechhh--hcCccHHHHH
Confidence 9998 68999999999 8887544444
No 247
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=97.00 E-value=0.17 Score=44.84 Aligned_cols=185 Identities=18% Similarity=0.178 Sum_probs=115.0
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCc-cc---HHHHHHHHHh-CCCcEEEecCC---CHHH-HHHHHHcCCCEEEeCCee
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADP-LS---KAAAIEALHA-YPGGLQVGGGI---NSDN-SLSYIEEGATHVIVTSYV 164 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~-~~---~~~i~~~v~~-~~~pl~vGGGI---r~e~-~~~~l~~Gad~VVigt~~ 164 (316)
+-.+-.+...++|++|+|+=-+|+.. +| -+.+.+.+++ .+-+--.+--. +.++ ++...++||+.+-+-.+.
T Consensus 18 nL~~e~~~~l~~GadwlHlDVMDg~FVpNiT~G~pvV~slR~~~~~~~ffD~HmMV~~Peq~V~~~a~agas~~tfH~E~ 97 (224)
T KOG3111|consen 18 NLAAECKKMLDAGADWLHLDVMDGHFVPNITFGPPVVESLRKHTGADPFFDVHMMVENPEQWVDQMAKAGASLFTFHYEA 97 (224)
T ss_pred HHHHHHHHHHHcCCCeEEEeeecccccCCcccchHHHHHHHhccCCCcceeEEEeecCHHHHHHHHHhcCcceEEEEEee
Confidence 34455666778999999999999863 21 1234455553 44433344433 3566 999999999999999988
Q ss_pred ecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC
Q 021156 165 FNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI 244 (316)
Q Consensus 165 ~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~ 244 (316)
.++ +..+-+-.++-| .-+.+-++ -| + ..|.+..+.+ -++.+++..+.--=-.+-+
T Consensus 98 ~q~----~~~lv~~ir~~G---mk~G~alk--Pg------------T---~Ve~~~~~~~-~~D~vLvMtVePGFGGQkF 152 (224)
T KOG3111|consen 98 TQK----PAELVEKIREKG---MKVGLALK--PG------------T---PVEDLEPLAE-HVDMVLVMTVEPGFGGQKF 152 (224)
T ss_pred ccC----HHHHHHHHHHcC---CeeeEEeC--CC------------C---cHHHHHHhhc-cccEEEEEEecCCCchhhh
Confidence 775 543333334333 34455444 33 1 2344444433 4788888887642122334
Q ss_pred CHH---HHHHHhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156 245 DDE---LVALLGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ 309 (316)
Q Consensus 245 d~e---li~~l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~ 309 (316)
-.+ -++.+++. .+.-+.+-||+.. +.+.++.++| +..++.|+|. | +.-+.++++...+.
T Consensus 153 me~mm~KV~~lR~kyp~l~ievDGGv~~-~ti~~~a~AG--AN~iVaGsav--f-~a~d~~~vi~~lr~ 215 (224)
T KOG3111|consen 153 MEDMMPKVEWLREKYPNLDIEVDGGVGP-STIDKAAEAG--ANMIVAGSAV--F-GAADPSDVISLLRN 215 (224)
T ss_pred HHHHHHHHHHHHHhCCCceEEecCCcCc-chHHHHHHcC--CCEEEeccee--e-cCCCHHHHHHHHHH
Confidence 334 45556644 4545558999865 6799999998 7889999999 6 33356666665543
No 248
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=97.00 E-value=0.0026 Score=62.76 Aligned_cols=73 Identities=23% Similarity=0.151 Sum_probs=53.3
Q ss_pred HHHHHHHHHcC-CCEEEEeecCCcccc-CCCCHHHHHHHhh---cC--------CCcEEEEeCCCCHHHHHHHHHhCCCc
Q 021156 216 DERVLDFLASY-ADEFLVHGVDVEGKK-LGIDDELVALLGK---YS--------PIPVTYAGGVTTMADLEKIKVAGIGR 282 (316)
Q Consensus 216 ~e~a~~~~~~G-a~~ilvtdi~~dG~~-~G~d~eli~~l~~---~~--------~iPVIasGGI~s~eDi~~l~~~G~g~ 282 (316)
.+.++.+.+.| ++.|++. .+.-|+- ..+-+.++..+.+ .+ ++||+++|||.|.+++..++.+| +
T Consensus 166 ~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~alG--A 242 (418)
T cd04742 166 EEQAELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFALG--A 242 (418)
T ss_pred HHHHHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHcC--C
Confidence 34555666666 5888776 5665553 2234455555433 22 69999999999999999999999 9
Q ss_pred CEEEEccch
Q 021156 283 VDVTVGSAL 291 (316)
Q Consensus 283 ~gVivG~Al 291 (316)
++|.+|+.+
T Consensus 243 d~V~~GT~f 251 (418)
T cd04742 243 DFIVTGSIN 251 (418)
T ss_pred cEEeeccHH
Confidence 999999987
No 249
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=96.99 E-value=0.0029 Score=57.83 Aligned_cols=74 Identities=14% Similarity=0.100 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCc--ccHHHHHHHHHhCC-CcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecC
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADP--LSKAAAIEALHAYP-GGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNN 167 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~--~~~~~i~~~v~~~~-~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~ 167 (316)
+..++|+...++|++++|+=...... .+...+.++.+.++ +|++.-|||++ +|+.+++++|||-|-+|+..+.+
T Consensus 149 ~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 149 DELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVARAILKG 226 (231)
T ss_pred hHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhccC
Confidence 67789999999999999993222222 23444444444564 99999999985 99999999999999999988875
No 250
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=96.96 E-value=0.024 Score=53.37 Aligned_cols=146 Identities=17% Similarity=0.135 Sum_probs=97.0
Q ss_pred CcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCccee---
Q 021156 134 GGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKF--- 210 (316)
Q Consensus 134 ~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~--- 210 (316)
+-+-.+=|-..+.+.+++++|.+.|.++...+.- +=|.+..+++++...+ .-+++-.- +-.-|..+.
T Consensus 80 V~lHLDHg~~~e~i~~ai~~GftSVM~DgS~lp~-eeNi~~Trevv~~Ah~--~gv~VEaE-------lG~igg~ed~~~ 149 (285)
T PRK07709 80 VAIHLDHGSSFEKCKEAIDAGFTSVMIDASHHPF-EENVETTKKVVEYAHA--RNVSVEAE-------LGTVGGQEDDVI 149 (285)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCH-HHHHHHHHHHHHHHHH--cCCEEEEE-------EeccCCccCCcc
Confidence 3345566666799999999999999997655431 0025555555544311 11334321 111111111
Q ss_pred ---c-ccCHHHHHHHHHHcCCCEEEEeecCCccccCC---CCHHHHHHHhhcCCCcEEEEeCCCCH-HHHHHHHHhCCCc
Q 021156 211 ---S-DVYLDERVLDFLASYADEFLVHGVDVEGKKLG---IDDELVALLGKYSPIPVTYAGGVTTM-ADLEKIKVAGIGR 282 (316)
Q Consensus 211 ---~-~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G---~d~eli~~l~~~~~iPVIasGGI~s~-eDi~~l~~~G~g~ 282 (316)
. --++.+..+...+.|++.+-+--=+.-|.+.| .|+++++++.+.+++|+..-||-+.+ ++++++.+.| +
T Consensus 150 ~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~G--i 227 (285)
T PRK07709 150 AEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLG--T 227 (285)
T ss_pred cccccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHcC--C
Confidence 0 12577767777778999875433355566655 49999999999999999999998877 7788899988 9
Q ss_pred CEEEEccch
Q 021156 283 VDVTVGSAL 291 (316)
Q Consensus 283 ~gVivG~Al 291 (316)
..+=|++.+
T Consensus 228 ~KiNi~T~l 236 (285)
T PRK07709 228 SKINVNTEN 236 (285)
T ss_pred eEEEeChHH
Confidence 999999876
No 251
>PRK06801 hypothetical protein; Provisional
Probab=96.96 E-value=0.036 Score=52.25 Aligned_cols=153 Identities=13% Similarity=0.155 Sum_probs=93.4
Q ss_pred HhCCCcE--EEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHH---HHHhcCceEEEeeeeeecCCee-EEE
Q 021156 130 HAYPGGL--QVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDL---VRVVGKQRLVLDLSCRKKDGKY-AIV 203 (316)
Q Consensus 130 ~~~~~pl--~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei---~~~~G~~~IvvslD~k~~~g~~-~v~ 203 (316)
++..+|+ ..+=|-..+.++++++.|++.|-+....+.. +-|.+..+++ .+.+|- .+-.-+..- +|.. -+.
T Consensus 71 ~~~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~S~l~~-eeNi~~t~~v~~~a~~~gv-~VE~ElG~v--gg~e~~v~ 146 (286)
T PRK06801 71 ARHDIPVVLNLDHGLHFEAVVRALRLGFSSVMFDGSTLEY-EENVRQTREVVKMCHAVGV-SVEAELGAV--GGDEGGAL 146 (286)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHhCCcEEEEcCCCCCH-HHHHHHHHHHHHHHHHcCC-eEEeecCcc--cCCCCCcc
Confidence 3455554 4555556789999999999999996554431 0024444444 444541 111122211 1100 000
Q ss_pred e-C-CcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCC---CCHHHHHHHhhcCCCcEEEEeC--CCCHHHHHHHH
Q 021156 204 T-D-RWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLG---IDDELVALLGKYSPIPVTYAGG--VTTMADLEKIK 276 (316)
Q Consensus 204 ~-~-gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G---~d~eli~~l~~~~~iPVIasGG--I~s~eDi~~l~ 276 (316)
. . +.. ..-++.+..+...+.|++.+-+.-=+..|.+.+ .|++.++++++.+++|+.+-|| +. .+++.++.
T Consensus 147 ~~~~~~~--~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~-~e~~~~~i 223 (286)
T PRK06801 147 YGEADSA--KFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGIS-DADFRRAI 223 (286)
T ss_pred cCCcccc--cCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCC-HHHHHHHH
Confidence 0 0 111 111344444444488999876622244455544 4999999999988999999999 66 47899999
Q ss_pred HhCCCcCEEEEccch
Q 021156 277 VAGIGRVDVTVGSAL 291 (316)
Q Consensus 277 ~~G~g~~gVivG~Al 291 (316)
+.| +..+-|++++
T Consensus 224 ~~G--i~KINv~T~~ 236 (286)
T PRK06801 224 ELG--IHKINFYTGM 236 (286)
T ss_pred HcC--CcEEEehhHH
Confidence 998 9999999988
No 252
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=96.96 E-value=0.0061 Score=59.62 Aligned_cols=72 Identities=19% Similarity=0.245 Sum_probs=56.0
Q ss_pred HHHHHHHHHcCCCEEEEeecCCcccc-CC--CCHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccc
Q 021156 216 DERVLDFLASYADEFLVHGVDVEGKK-LG--IDDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA 290 (316)
Q Consensus 216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~-~G--~d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~A 290 (316)
.+.++.+.+.|++.|++-.- -|+. .+ +-.+.+.++.+.+ ++|||+.|||++-.|+.+++.+| +++|++|+.
T Consensus 256 ~~dA~~a~~~Gvd~I~Vs~h--GGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLG--A~~V~iGr~ 331 (381)
T PRK11197 256 PEDARDAVRFGADGIVVSNH--GGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALG--ADTVLLGRA 331 (381)
T ss_pred HHHHHHHHhCCCCEEEECCC--CCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcC--cCceeEhHH
Confidence 47889999999999986431 2332 11 1356666665543 69999999999999999999999 999999998
Q ss_pred h
Q 021156 291 L 291 (316)
Q Consensus 291 l 291 (316)
+
T Consensus 332 ~ 332 (381)
T PRK11197 332 F 332 (381)
T ss_pred H
Confidence 8
No 253
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=96.94 E-value=0.0011 Score=63.65 Aligned_cols=85 Identities=20% Similarity=0.180 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHcCCCcceEEEec---------------CC---cccH---HHHHHHHH-hC--CCcEEEecCCCH-HHHH
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLG---------------AD---PLSK---AAAIEALH-AY--PGGLQVGGGINS-DNSL 148 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLd---------------a~---~~~~---~~i~~~v~-~~--~~pl~vGGGIr~-e~~~ 148 (316)
+..++|+.+.++|++++.+..=- +. .... ...+..++ .+ ++||+.-|||++ +|+.
T Consensus 217 ~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~ 296 (327)
T cd04738 217 ELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAY 296 (327)
T ss_pred HHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHH
Confidence 57789999999999999887510 00 1111 12233333 45 689999999984 9999
Q ss_pred HHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHH
Q 021156 149 SYIEEGATHVIVTSYVFNNGQMDLERLKDLVRV 181 (316)
Q Consensus 149 ~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~ 181 (316)
+++.+|||.|-++|.++.+ +|.++.++.+.
T Consensus 297 e~l~aGAd~V~vg~~~~~~---gP~~~~~i~~~ 326 (327)
T cd04738 297 EKIRAGASLVQLYTGLVYE---GPGLVKRIKRE 326 (327)
T ss_pred HHHHcCCCHHhccHHHHhh---CcHHHHHHHhc
Confidence 9999999999999999764 39999888754
No 254
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=96.91 E-value=0.0038 Score=59.84 Aligned_cols=87 Identities=20% Similarity=0.250 Sum_probs=62.5
Q ss_pred cCHHHHHHHHHHcCCCcceEEEe--------cCCc----------c---cHHHHHHHH-HhCCCcEEEecCCCH-HHHHH
Q 021156 93 KSAAEFANLYKEDGLTGGHAIML--------GADP----------L---SKAAAIEAL-HAYPGGLQVGGGINS-DNSLS 149 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDL--------da~~----------~---~~~~i~~~v-~~~~~pl~vGGGIr~-e~~~~ 149 (316)
++..++++.+.+.|++++.+..- +... . .....+..+ +.+++||+..|||++ +|+.+
T Consensus 175 ~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~s~~Da~e 254 (325)
T cd04739 175 SALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVHDAEDVVK 254 (325)
T ss_pred cCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCCCHHHHHH
Confidence 36778999999999999988552 1100 0 111222333 346899999999985 99999
Q ss_pred HHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156 150 YIEEGATHVIVTSYVFNNGQMDLERLKDLVRVV 182 (316)
Q Consensus 150 ~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~ 182 (316)
.+.+||+.|-++|+++.+| |+.+.++.+..
T Consensus 255 ~l~aGA~~Vqv~ta~~~~g---p~~~~~i~~~L 284 (325)
T cd04739 255 YLLAGADVVMTTSALLRHG---PDYIGTLLAGL 284 (325)
T ss_pred HHHcCCCeeEEehhhhhcC---chHHHHHHHHH
Confidence 9999999999999998863 66666665544
No 255
>PLN02979 glycolate oxidase
Probab=96.91 E-value=0.0064 Score=58.96 Aligned_cols=74 Identities=19% Similarity=0.152 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 216 DERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
.+.++.+.+.|++.|++-.-.--+...++ -.+.+.++++.+ ++||+++|||++-.|+.+.+.+| +++|.+|+.+
T Consensus 234 ~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALG--AdaV~iGrp~ 310 (366)
T PLN02979 234 GEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG--ASGIFIGRPV 310 (366)
T ss_pred HHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcC--CCEEEEcHHH
Confidence 47889999999999976443211111222 356677776543 49999999999999999999999 8999999988
No 256
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=96.89 E-value=0.0035 Score=59.65 Aligned_cols=104 Identities=20% Similarity=0.182 Sum_probs=72.1
Q ss_pred ceEEEeeeeeecCCeeEEEeCCcc----eecc-------cCHHHHHHHHHHcCCCEEEEeecCC--cccc-CCCCHHHHH
Q 021156 185 QRLVLDLSCRKKDGKYAIVTDRWQ----KFSD-------VYLDERVLDFLASYADEFLVHGVDV--EGKK-LGIDDELVA 250 (316)
Q Consensus 185 ~~IvvslD~k~~~g~~~v~~~gw~----~~~~-------~~~~e~a~~~~~~Ga~~ilvtdi~~--dG~~-~G~d~eli~ 250 (316)
.||++++|+|.++..-.|.++|-+ +.++ -.+.++++++.+.|++++.+..|+. |=-+ .-|-++.++
T Consensus 230 kRiIACLDVRtND~GDLVVTKGDQYDVREkS~g~eVRNLGKPV~Laq~Yyq~GADEv~FLNITsFRdcPl~D~PMlqVL~ 309 (541)
T KOG0623|consen 230 KRIIACLDVRTNDKGDLVVTKGDQYDVREKSNGNEVRNLGKPVDLAQQYYQDGADEVSFLNITSFRDCPLGDLPMLQVLR 309 (541)
T ss_pred hhheeeeeeeccCCCceEEecCcccchhhccCchhhhccCChHHHHHHHHhcCCceeEEEeeccccCCCcccChHHHHHH
Confidence 689999999986432366666653 1111 1588999999999999998877753 2111 223455566
Q ss_pred HHhhcCCCcEEEEeCCCCHHHH-----------HHHHHhCCCcCEEEEccc
Q 021156 251 LLGKYSPIPVTYAGGVTTMADL-----------EKIKVAGIGRVDVTVGSA 290 (316)
Q Consensus 251 ~l~~~~~iPVIasGGI~s~eDi-----------~~l~~~G~g~~gVivG~A 290 (316)
+.++.+-+|+.++|||++..|. ...++.| ++.|.||+-
T Consensus 310 qaaktVFVPLTVGGGIrD~~D~dGt~~palEVA~~YFRSG--ADKvSIGsD 358 (541)
T KOG0623|consen 310 QAAKTVFVPLTVGGGIRDFTDADGTYYPALEVAAEYFRSG--ADKVSIGSD 358 (541)
T ss_pred HhhceEEEEEeecCcccccccCCCcCchhHHHHHHHHhcC--Cceeeechh
Confidence 6666677999999999987653 3445556 899999973
No 257
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=96.89 E-value=0.002 Score=60.32 Aligned_cols=84 Identities=19% Similarity=0.225 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHcCCCcceEEEecC---------------C------ccc---HHHHHHHH-HhC--CCcEEEecCCC-HH
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGA---------------D------PLS---KAAAIEAL-HAY--PGGLQVGGGIN-SD 145 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda---------------~------~~~---~~~i~~~v-~~~--~~pl~vGGGIr-~e 145 (316)
+..++++.+.++|++.+.+..-.. . ... ....++.+ +.+ ++|++..|||+ .+
T Consensus 177 ~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~ 256 (289)
T cd02810 177 DIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGE 256 (289)
T ss_pred HHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHH
Confidence 567889999999999998853210 0 000 11223333 346 79999999998 59
Q ss_pred HHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHH
Q 021156 146 NSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVR 180 (316)
Q Consensus 146 ~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~ 180 (316)
++.+++.+|||.|-+|+.++.+| |+++.++.+
T Consensus 257 da~~~l~~GAd~V~vg~a~~~~G---P~~~~~i~~ 288 (289)
T cd02810 257 DVLEMLMAGASAVQVATALMWDG---PDVIRKIKK 288 (289)
T ss_pred HHHHHHHcCccHheEcHHHHhcC---ccHHHHHhc
Confidence 99999999999999999999863 888888764
No 258
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=96.89 E-value=0.017 Score=51.81 Aligned_cols=175 Identities=19% Similarity=0.167 Sum_probs=105.8
Q ss_pred ccCHHHHHHHHHHcCCCcceEEEec----CCcccHHHHHHHHH-hCCCcEEEecC-C-CHHHHHHHHHcCCCEEEeCCee
Q 021156 92 DKSAAEFANLYKEDGLTGGHAIMLG----ADPLSKAAAIEALH-AYPGGLQVGGG-I-NSDNSLSYIEEGATHVIVTSYV 164 (316)
Q Consensus 92 ~~~p~e~a~~~~~~G~~~l~lvDLd----a~~~~~~~i~~~v~-~~~~pl~vGGG-I-r~e~~~~~l~~Gad~VVigt~~ 164 (316)
+-+|.+.|..|++.|+.-+.+.-=+ +.-.+...+.+++. +++-|+..--- | ..-++...--.|||.|.+=.+.
T Consensus 90 d~~~ae~A~~Yak~GAs~iSVLTe~k~FkGsledL~~irk~~~~k~p~~~lL~KeFivd~~QI~~aR~~GADaVLLIvam 169 (289)
T KOG4201|consen 90 DANAAEQALAYAKGGASCISVLTEPKWFKGSLEDLVAIRKIAGVKCPPKCLLRKEFIVDPYQIYEARLKGADAVLLIVAM 169 (289)
T ss_pred ccCHHHHHHHHHhcCceeeeeecCchhhcccHHHHHHHHHHhcCcCChHhHhHHHHccCHHHHHHHHhcCCceeehHHHH
Confidence 3589999999999997755543221 11122222222221 12212111100 0 1245666667899998776655
Q ss_pred ecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC
Q 021156 165 FNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI 244 (316)
Q Consensus 165 ~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~ 244 (316)
+.+ ...+.+-++++..|-+.+ +. ++..+..++..+.|+.-+-++.++..- -..
T Consensus 170 Ls~--~~lk~l~k~~K~L~me~L---VE--------------------Vn~~eEm~raleiGakvvGvNNRnL~s--FeV 222 (289)
T KOG4201|consen 170 LSD--LLLKELYKISKDLGMEPL---VE--------------------VNDEEEMQRALEIGAKVVGVNNRNLHS--FEV 222 (289)
T ss_pred cCh--HHHHHHHHHHHHcCCcce---ee--------------------eccHHHHHHHHHhCcEEEeecCCccce--eee
Confidence 554 013444455555542221 11 122456667777899977777766541 234
Q ss_pred CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156 245 DDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN 297 (316)
Q Consensus 245 d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~ 297 (316)
|+...+++.+-. ++-+++-.|+.|++|+....++| +.+|.||-++ ....
T Consensus 223 DlstTskL~E~i~kDvilva~SGi~tpdDia~~q~~G--V~avLVGEsl--mk~s 273 (289)
T KOG4201|consen 223 DLSTTSKLLEGIPKDVILVALSGIFTPDDIAKYQKAG--VKAVLVGESL--MKQS 273 (289)
T ss_pred chhhHHHHHhhCccceEEEeccCCCCHHHHHHHHHcC--ceEEEecHHH--Hhcc
Confidence 777777877653 45577888999999999999998 9999999999 7543
No 259
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=96.87 E-value=0.0058 Score=53.90 Aligned_cols=74 Identities=19% Similarity=0.126 Sum_probs=51.3
Q ss_pred ccCHHHHHHHHHHcCCCcceEEEec--CC----cccHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeee
Q 021156 92 DKSAAEFANLYKEDGLTGGHAIMLG--AD----PLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVF 165 (316)
Q Consensus 92 ~~~p~e~a~~~~~~G~~~l~lvDLd--a~----~~~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~ 165 (316)
..+|.+..+ ....|++.+.+ ... +. ....+.+.+..+..++|++++|||+.+++..++++||+.+++||..+
T Consensus 113 ~~t~~e~~~-~~~~~~d~v~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI~~~~i~~~~~~Gad~vvvGsai~ 190 (202)
T cd04726 113 VEDPEKRAK-LLKLGVDIVIL-HRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVAGGITPDTLPEFKKAGADIVIVGRAIT 190 (202)
T ss_pred CCCHHHHHH-HHHCCCCEEEE-cCcccccccCCCCCHHHHHHHHhhcCCCEEEECCcCHHHHHHHHhcCCCEEEEeehhc
Confidence 357888776 55567775444 221 11 11233333333336799999999999999999999999999999988
Q ss_pred cC
Q 021156 166 NN 167 (316)
Q Consensus 166 ~~ 167 (316)
+.
T Consensus 191 ~~ 192 (202)
T cd04726 191 GA 192 (202)
T ss_pred CC
Confidence 64
No 260
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=96.82 E-value=0.096 Score=55.83 Aligned_cols=163 Identities=17% Similarity=0.084 Sum_probs=102.7
Q ss_pred HHHHHHHHHHcCCCcceEEEecCCccc----HHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156 95 AAEFANLYKEDGLTGGHAIMLGADPLS----KAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQM 170 (316)
Q Consensus 95 p~e~a~~~~~~G~~~l~lvDLda~~~~----~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~ 170 (316)
..+..+...+.|+..+++=+=+..... -..+.+.+++.++++++-. +++-+++.|+| |=+|.....
T Consensus 21 ~~~~l~~~l~~g~~~iqlR~K~~~~~~~~~~a~~l~~l~~~~~~~liind-----~~~la~~~~~d-VHlg~~dl~---- 90 (755)
T PRK09517 21 VAGIVDSAISGGVSVVQLRDKNAGVEDVRAAAKELKELCDARGVALVVND-----RLDVAVELGLH-VHIGQGDTP---- 90 (755)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeC-----hHHHHHHcCCC-eecCCCcCC----
Confidence 345555556678877776544433211 1223334445567788765 57777889999 657754322
Q ss_pred CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH---HHHc---CCCEEEEeecCCcccc---
Q 021156 171 DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD---FLAS---YADEFLVHGVDVEGKK--- 241 (316)
Q Consensus 171 ~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~---~~~~---Ga~~ilvtdi~~dG~~--- 241 (316)
+ .+..+..|++. ++++.+. +..+..+. .... |++.+.+-.+-...+.
T Consensus 91 -~---~~~r~~~~~~~-~iG~S~h-------------------~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~ 146 (755)
T PRK09517 91 -Y---TQARRLLPAHL-ELGLTIE-------------------TLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDA 146 (755)
T ss_pred -H---HHHHHhcCCCC-EEEEeCC-------------------CHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCC
Confidence 3 33444455433 4666653 12232211 1223 4898876555333333
Q ss_pred -CCCCHHHHHHHhhcCC---CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccC
Q 021156 242 -LGIDDELVALLGKYSP---IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGG 296 (316)
Q Consensus 242 -~G~d~eli~~l~~~~~---iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g 296 (316)
....++.++++++.+. +||++-||| +.+++.++.+.| ++|+.+-+++ +.-
T Consensus 147 ~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~~G--a~giAvisai--~~a 200 (755)
T PRK09517 147 PPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAATG--IDGLCVVSAI--MAA 200 (755)
T ss_pred CCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHHcC--CCEEEEehHh--hCC
Confidence 3348899999988776 999999999 789999999998 9999999999 743
No 261
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=96.82 E-value=0.004 Score=56.48 Aligned_cols=65 Identities=12% Similarity=0.169 Sum_probs=51.7
Q ss_pred cCCccccCCC-CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156 235 VDVEGKKLGI-DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA 308 (316)
Q Consensus 235 i~~dG~~~G~-d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~ 308 (316)
+...|+...| ..|.++++.+.. |+|++|||+|.|..+++.++| +|-+++|..+ |+.+ +.+.+...
T Consensus 170 lEagsga~~Pv~~e~v~~v~~~~--~LivGGGIrs~E~A~~~a~ag--AD~IVtG~ii--ee~~---~~~~~~v~ 235 (240)
T COG1646 170 LEAGSGAGDPVPVEMVSRVLSDT--PLIVGGGIRSPEQAREMAEAG--ADTIVTGTII--EEDP---DKALETVE 235 (240)
T ss_pred EEecCCCCCCcCHHHHHHhhccc--eEEEcCCcCCHHHHHHHHHcC--CCEEEECcee--ecCH---HHHHHHHH
Confidence 3444666555 888888887655 999999999999999999998 8999999999 9876 44444433
No 262
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=96.79 E-value=0.038 Score=52.07 Aligned_cols=146 Identities=15% Similarity=0.109 Sum_probs=95.9
Q ss_pred CcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCccee---
Q 021156 134 GGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKF--- 210 (316)
Q Consensus 134 ~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~--- 210 (316)
+-+-.+=|-..+.+++++++|.+.|.++...+.- +=|.+..+++++... ..-+++-.- +-.-|..+.
T Consensus 80 V~lHLDHg~~~e~i~~ai~~GftSVM~DgS~l~~-eeNi~~T~~vve~Ah--~~gv~VEaE-------lG~vgg~ed~~~ 149 (286)
T PRK08610 80 VAIHLDHGSSFEKCKEAIDAGFTSVMIDASHSPF-EENVATTKKVVEYAH--EKGVSVEAE-------LGTVGGQEDDVV 149 (286)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCH-HHHHHHHHHHHHHHH--HcCCEEEEE-------EeccCCccCCCC
Confidence 3345555666799999999999999997655431 002455555554431 111344331 111111110
Q ss_pred -c---ccCHHHHHHHHHHcCCCEEEEeecCCccccCC---CCHHHHHHHhhcCCCcEEEEeCCCCH-HHHHHHHHhCCCc
Q 021156 211 -S---DVYLDERVLDFLASYADEFLVHGVDVEGKKLG---IDDELVALLGKYSPIPVTYAGGVTTM-ADLEKIKVAGIGR 282 (316)
Q Consensus 211 -~---~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G---~d~eli~~l~~~~~iPVIasGGI~s~-eDi~~l~~~G~g~ 282 (316)
. --++.+..+...+-|++.+-+--=+.-|.+.| .|++.++++.+.+++|+..-||=+.+ ++++++.+.| +
T Consensus 150 ~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~G--I 227 (286)
T PRK08610 150 ADGIIYADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIPFG--T 227 (286)
T ss_pred CcccccCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHCC--C
Confidence 0 12576666666678999775433355566655 49999999999899999999998887 6778888888 9
Q ss_pred CEEEEccch
Q 021156 283 VDVTVGSAL 291 (316)
Q Consensus 283 ~gVivG~Al 291 (316)
..+=|++.+
T Consensus 228 ~KiNi~T~l 236 (286)
T PRK08610 228 AKINVNTEN 236 (286)
T ss_pred eEEEeccHH
Confidence 999999877
No 263
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=96.79 E-value=0.0039 Score=57.94 Aligned_cols=74 Identities=18% Similarity=0.065 Sum_probs=54.5
Q ss_pred ccCHHHHHHHHHHcCCCcceEEEecCC-------cccHHHHHHHHHh-CCCcEEEecCCCH-HHHHHHHHcCCCEEEeCC
Q 021156 92 DKSAAEFANLYKEDGLTGGHAIMLGAD-------PLSKAAAIEALHA-YPGGLQVGGGINS-DNSLSYIEEGATHVIVTS 162 (316)
Q Consensus 92 ~~~p~e~a~~~~~~G~~~l~lvDLda~-------~~~~~~i~~~v~~-~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt 162 (316)
...|.+.++..++..-..+|++-+-+. .......++.+++ .+.|+.+|+||++ ++++++.+. ||-||+||
T Consensus 151 p~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 151 PTTTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred CCCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 345667777777776666777766542 1234445566664 6899999999985 999999985 99999999
Q ss_pred eeec
Q 021156 163 YVFN 166 (316)
Q Consensus 163 ~~~~ 166 (316)
++.+
T Consensus 230 aiv~ 233 (258)
T PRK13111 230 ALVK 233 (258)
T ss_pred HHHH
Confidence 9865
No 264
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=96.77 E-value=0.04 Score=50.63 Aligned_cols=176 Identities=17% Similarity=0.162 Sum_probs=106.6
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCC---------cccHHHHHHHH----HhCCCcEEEecCC---C---H-HHHHHHHHc
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGAD---------PLSKAAAIEAL----HAYPGGLQVGGGI---N---S-DNSLSYIEE 153 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~---------~~~~~~i~~~v----~~~~~pl~vGGGI---r---~-e~~~~~l~~ 153 (316)
|+. .|+..+++|++-+++-+.-.. .....++...+ +.+.+|+++++-. . . +.++++.++
T Consensus 18 D~~-sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~ 96 (243)
T cd00377 18 DAL-SARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEA 96 (243)
T ss_pred CHH-HHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 676 788888889887777665411 11334443333 4567899887655 3 2 458888899
Q ss_pred CCCEEEeCCeee-cC-----C--CCCH-H---HHHHHHHHhcC--c-eEEEeeeeeecCCeeEEEeCCcceecccCHHHH
Q 021156 154 GATHVIVTSYVF-NN-----G--QMDL-E---RLKDLVRVVGK--Q-RLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDER 218 (316)
Q Consensus 154 Gad~VVigt~~~-~~-----~--~~~~-e---li~ei~~~~G~--~-~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~ 218 (316)
|++-|.|--... ++ + -+++ + .++.+.+.... + -|++-.|.. .+...+. -+.++.
T Consensus 97 G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~------~~~~~~~-----~eai~R 165 (243)
T cd00377 97 GAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDAL------LAGEEGL-----DEAIER 165 (243)
T ss_pred CCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCch------hccCCCH-----HHHHHH
Confidence 999999911111 00 0 0122 2 33333333321 1 122222322 0100111 247889
Q ss_pred HHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCC-HHHHHHHHHhCCCcCEEEEccch
Q 021156 219 VLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTT-MADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 219 a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s-~eDi~~l~~~G~g~~gVivG~Al 291 (316)
++.+.+.|++.+.++... +.+.++++.+..+.|+.+.-.-.. .-.+.++.++| +.-++.|..+
T Consensus 166 a~ay~~AGAD~v~v~~~~--------~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l~~lG--~~~v~~~~~~ 229 (243)
T cd00377 166 AKAYAEAGADGIFVEGLK--------DPEEIRAFAEAPDVPLNVNMTPGGNLLTVAELAELG--VRRVSYGLAL 229 (243)
T ss_pred HHHHHHcCCCEEEeCCCC--------CHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHCC--CeEEEEChHH
Confidence 999999999999877654 678999999888899877632211 13577777888 8889999877
No 265
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=96.75 E-value=0.077 Score=50.03 Aligned_cols=154 Identities=14% Similarity=0.071 Sum_probs=98.1
Q ss_pred HHhCCCc--EEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe-C
Q 021156 129 LHAYPGG--LQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT-D 205 (316)
Q Consensus 129 v~~~~~p--l~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~-~ 205 (316)
.++..+| +..+=|-..+.+++++++|.+.|.++...+.- +-|.+..+++++...+ .-+++-.-. | .|.. .
T Consensus 70 a~~~~VPValHLDHg~~~e~i~~ai~~GFtSVM~DgS~lp~-eeNi~~T~evv~~Ah~--~gv~VEaEl--G--~igg~e 142 (286)
T PRK12738 70 STTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPF-AENVKLVKSVVDFCHS--QDCSVEAEL--G--RLGGVE 142 (286)
T ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEeecCCCCCH-HHHHHHHHHHHHHHHH--cCCeEEEEE--E--eeCCcc
Confidence 3444455 55666667799999999999999997665532 0135566666554321 113333210 1 1210 0
Q ss_pred Cc----c-eecccCHHHHHHHHHHcCCCEEEEeecCCccccCC---CCHHHHHHHhhcCCCcEEEEeCCCCH-HHHHHHH
Q 021156 206 RW----Q-KFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLG---IDDELVALLGKYSPIPVTYAGGVTTM-ADLEKIK 276 (316)
Q Consensus 206 gw----~-~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G---~d~eli~~l~~~~~iPVIasGGI~s~-eDi~~l~ 276 (316)
+. . +..--++.+..+...+.|+|.+-+.-=+.-|.+.+ .|+++++++.+.+++|+..-||=+.+ ++++++.
T Consensus 143 d~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai 222 (286)
T PRK12738 143 DDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTI 222 (286)
T ss_pred CCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHH
Confidence 10 0 00012576666677778999875433345566644 49999999999999999998887665 5677788
Q ss_pred HhCCCcCEEEEccch
Q 021156 277 VAGIGRVDVTVGSAL 291 (316)
Q Consensus 277 ~~G~g~~gVivG~Al 291 (316)
+.| +..+=|++.+
T Consensus 223 ~~G--I~KiNi~T~l 235 (286)
T PRK12738 223 ELG--VTKVNVATEL 235 (286)
T ss_pred HcC--CeEEEeCcHH
Confidence 888 9999999877
No 266
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=96.73 E-value=0.0063 Score=60.56 Aligned_cols=72 Identities=24% Similarity=0.124 Sum_probs=52.8
Q ss_pred HHHHHHHHcC-CCEEEEeecCCcccc-CCCCHHHHHHHh---hcC--------CCcEEEEeCCCCHHHHHHHHHhCCCcC
Q 021156 217 ERVLDFLASY-ADEFLVHGVDVEGKK-LGIDDELVALLG---KYS--------PIPVTYAGGVTTMADLEKIKVAGIGRV 283 (316)
Q Consensus 217 e~a~~~~~~G-a~~ilvtdi~~dG~~-~G~d~eli~~l~---~~~--------~iPVIasGGI~s~eDi~~l~~~G~g~~ 283 (316)
+.+..+.+.| ++.|++. .+.-|+- ..+-+.++..+. +.+ ++||+++|||.|.+++..++.+| ++
T Consensus 172 eEA~~a~~~g~aD~Ivve-~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAlaLG--Ad 248 (444)
T TIGR02814 172 EEAELARRVPVADDICVE-ADSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFMLG--AD 248 (444)
T ss_pred HHHHHHHhCCCCcEEEEe-ccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHHcC--Cc
Confidence 3445555666 5777664 6665553 223556666663 333 78999999999999999999999 99
Q ss_pred EEEEccch
Q 021156 284 DVTVGSAL 291 (316)
Q Consensus 284 gVivG~Al 291 (316)
+|.+|+.+
T Consensus 249 gV~~GT~f 256 (444)
T TIGR02814 249 FIVTGSVN 256 (444)
T ss_pred EEEeccHH
Confidence 99999987
No 267
>PLN02334 ribulose-phosphate 3-epimerase
Probab=96.71 E-value=0.0089 Score=54.27 Aligned_cols=87 Identities=21% Similarity=0.218 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHcC-CCcceEEEecCC--cc-cHHH---HHHHHHh--CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCee
Q 021156 94 SAAEFANLYKEDG-LTGGHAIMLGAD--PL-SKAA---AIEALHA--YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYV 164 (316)
Q Consensus 94 ~p~e~a~~~~~~G-~~~l~lvDLda~--~~-~~~~---i~~~v~~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~ 164 (316)
+|.+.++.+...| ++.+-+-.+..+ +. -.+. .++.+++ .+.|+.+.|||+.+++..+.++||+.+++||+.
T Consensus 126 t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI~~e~i~~l~~aGad~vvvgsai 205 (229)
T PLN02334 126 TPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEVDGGVGPSTIDKAAEAGANVIVAGSAV 205 (229)
T ss_pred CCHHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEEeCCCCHHHHHHHHHcCCCEEEEChHH
Confidence 5788888777664 887777666643 11 1111 1222332 357999999999999999999999999999998
Q ss_pred ecCCCCCH-HHHHHHHHHh
Q 021156 165 FNNGQMDL-ERLKDLVRVV 182 (316)
Q Consensus 165 ~~~~~~~~-eli~ei~~~~ 182 (316)
++.. +| +.++++.+.+
T Consensus 206 ~~~~--d~~~~~~~l~~~~ 222 (229)
T PLN02334 206 FGAP--DYAEVISGLRASV 222 (229)
T ss_pred hCCC--CHHHHHHHHHHHH
Confidence 8642 23 4555555544
No 268
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=96.71 E-value=0.0013 Score=63.59 Aligned_cols=86 Identities=23% Similarity=0.258 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHcCCCcceEEEe-------cC--------C---cc---cHHHHHHHH-HhC--CCcEEEecCCCH-HHHH
Q 021156 94 SAAEFANLYKEDGLTGGHAIML-------GA--------D---PL---SKAAAIEAL-HAY--PGGLQVGGGINS-DNSL 148 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDL-------da--------~---~~---~~~~i~~~v-~~~--~~pl~vGGGIr~-e~~~ 148 (316)
+..++|+.+.++|++++.+..= .. . .. .....+..+ +.+ ++||+.-|||++ +|+.
T Consensus 226 ~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~ 305 (344)
T PRK05286 226 ELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAY 305 (344)
T ss_pred HHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHH
Confidence 4778999999999999999862 10 0 00 111122333 345 689999999985 9999
Q ss_pred HHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156 149 SYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVV 182 (316)
Q Consensus 149 ~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~ 182 (316)
+++.+||+.|-++|.++.+ +|.++.++.+.+
T Consensus 306 e~l~aGAd~V~v~~~~~~~---gP~~~~~i~~~L 336 (344)
T PRK05286 306 EKIRAGASLVQIYSGLIYE---GPGLVKEIVRGL 336 (344)
T ss_pred HHHHcCCCHHHHHHHHHHh---CchHHHHHHHHH
Confidence 9999999999999999753 288888887654
No 269
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=96.71 E-value=0.0051 Score=56.47 Aligned_cols=73 Identities=16% Similarity=0.018 Sum_probs=52.8
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCCc-------ccHHHHHHHHHh-CCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCe
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGADP-------LSKAAAIEALHA-YPGGLQVGGGINS-DNSLSYIEEGATHVIVTSY 163 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~~-------~~~~~i~~~v~~-~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~ 163 (316)
..|.+..+.+.+...+.++++-..+.. .+....++.+++ .+.|+.+||||+. ++++++.++ ||.+|+||+
T Consensus 139 ~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSa 217 (242)
T cd04724 139 TTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSA 217 (242)
T ss_pred CCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHHcc-CCEEEECHH
Confidence 456677777777556666777766431 122233444443 5799999999994 899999999 999999998
Q ss_pred eec
Q 021156 164 VFN 166 (316)
Q Consensus 164 ~~~ 166 (316)
+++
T Consensus 218 iv~ 220 (242)
T cd04724 218 LVK 220 (242)
T ss_pred HHH
Confidence 875
No 270
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=96.70 E-value=0.023 Score=51.75 Aligned_cols=88 Identities=25% Similarity=0.237 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHcC-CCcceEEEecCC-cccHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCC---
Q 021156 94 SAAEFANLYKEDG-LTGGHAIMLGAD-PLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNG--- 168 (316)
Q Consensus 94 ~p~e~a~~~~~~G-~~~l~lvDLda~-~~~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~--- 168 (316)
+-.+.++.+.+.| ++.+.+.=.-.+ +.+.+++..+.+..+.|+.+|-|++.+.+..+++. ||-+|+||.+-++|
T Consensus 164 ~~~~~v~dtver~~aDaVI~tG~~TG~~~d~~el~~a~~~~~~pvlvGSGv~~eN~~~~l~~-adG~IvgT~lK~~G~~~ 242 (263)
T COG0434 164 SLEEAVKDTVERGLADAVIVTGSRTGSPPDLEELKLAKEAVDTPVLVGSGVNPENIEELLKI-ADGVIVGTSLKKGGVTW 242 (263)
T ss_pred CHHHHHHHHHHccCCCEEEEecccCCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHHHHHH-cCceEEEEEEccCCEec
Confidence 4557777766665 887766555433 45677776666678899999999999999999998 99999999998887
Q ss_pred -CCCHHHHHHHHHHh
Q 021156 169 -QMDLERLKDLVRVV 182 (316)
Q Consensus 169 -~~~~eli~ei~~~~ 182 (316)
.++++.+.++.+..
T Consensus 243 n~VD~~Rv~~~v~~a 257 (263)
T COG0434 243 NPVDLERVRRFVEAA 257 (263)
T ss_pred CccCHHHHHHHHHHH
Confidence 57888888888765
No 271
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=96.69 E-value=0.0067 Score=58.25 Aligned_cols=86 Identities=16% Similarity=0.201 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCC--------c----------ccHH---HHHHHH-HhCCCcEEEecCCCH-HHHHHH
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGAD--------P----------LSKA---AAIEAL-HAYPGGLQVGGGINS-DNSLSY 150 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~--------~----------~~~~---~i~~~v-~~~~~pl~vGGGIr~-e~~~~~ 150 (316)
++.++|+.+.+.|++++.++.--.. . ...+ ..+..+ +.+.+||+.-|||++ +|+.++
T Consensus 178 ~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~s~~Da~e~ 257 (334)
T PRK07565 178 NLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVHDAEDVIKM 257 (334)
T ss_pred hHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHH
Confidence 6778999999999999877542100 0 0011 122223 346799999999985 999999
Q ss_pred HHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156 151 IEEGATHVIVTSYVFNNGQMDLERLKDLVRVV 182 (316)
Q Consensus 151 l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~ 182 (316)
+.+||+.|-++|.++.+| |+.+.++.+..
T Consensus 258 l~aGA~~V~v~t~~~~~g---~~~~~~i~~~L 286 (334)
T PRK07565 258 LLAGADVVMIASALLRHG---PDYIGTILRGL 286 (334)
T ss_pred HHcCCCceeeehHHhhhC---cHHHHHHHHHH
Confidence 999999999999998863 66666655543
No 272
>PLN02591 tryptophan synthase
Probab=96.68 E-value=0.0053 Score=56.78 Aligned_cols=73 Identities=18% Similarity=0.079 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCc-------ccHHHHHHHHHh-CCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCee
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADP-------LSKAAAIEALHA-YPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYV 164 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~-------~~~~~i~~~v~~-~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~ 164 (316)
.+.+.++..++..-..+|+|=..+.. ......++.+++ .+.|+.+|-||+ .++++++.+.|||-||+||++
T Consensus 142 t~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSal 221 (250)
T PLN02591 142 TPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAM 221 (250)
T ss_pred CCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHH
Confidence 44456666666544555666554321 223344555554 689999999999 599999999999999999998
Q ss_pred ec
Q 021156 165 FN 166 (316)
Q Consensus 165 ~~ 166 (316)
.+
T Consensus 222 Vk 223 (250)
T PLN02591 222 VK 223 (250)
T ss_pred HH
Confidence 55
No 273
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=96.68 E-value=0.063 Score=50.49 Aligned_cols=154 Identities=15% Similarity=0.195 Sum_probs=93.9
Q ss_pred HHHHHhCCCcE--EEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHH---HHHhcCceEEEeeeeeecCCee
Q 021156 126 IEALHAYPGGL--QVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDL---VRVVGKQRLVLDLSCRKKDGKY 200 (316)
Q Consensus 126 ~~~v~~~~~pl--~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei---~~~~G~~~IvvslD~k~~~g~~ 200 (316)
....++..+|+ ..+=|-..+.++++++.|++.|-+....... +-+.++.+++ .+.+| +.+..+.-
T Consensus 67 ~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~-~eni~~t~~v~~~a~~~g---v~veaE~g------ 136 (281)
T PRK06806 67 VAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGSHLPL-EENIQKTKEIVELAKQYG---ATVEAEIG------ 136 (281)
T ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCH-HHHHHHHHHHHHHHHHcC---CeEEEEee------
Confidence 33444455554 4555545688999999999999997655432 0013333343 34444 22333321
Q ss_pred EEE-eCC---cceecccCHHHHHHHH-HHcCCCEEEEeecCCccccC---CCCHHHHHHHhhcCCCcEEEEe--CCCCHH
Q 021156 201 AIV-TDR---WQKFSDVYLDERVLDF-LASYADEFLVHGVDVEGKKL---GIDDELVALLGKYSPIPVTYAG--GVTTMA 270 (316)
Q Consensus 201 ~v~-~~g---w~~~~~~~~~e~a~~~-~~~Ga~~ilvtdi~~dG~~~---G~d~eli~~l~~~~~iPVIasG--GI~s~e 270 (316)
.+- ... ....+.-++.+ ++++ .+.|++.+-+---..-|+.. ..+++.++++++.+++|+.+-| ||.. +
T Consensus 137 hlG~~d~~~~~~g~s~t~~ee-a~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~-e 214 (281)
T PRK06806 137 RVGGSEDGSEDIEMLLTSTTE-AKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISP-E 214 (281)
T ss_pred eECCccCCcccccceeCCHHH-HHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCH-H
Confidence 121 000 00111124544 4555 46699987651111112332 2499999999999999999999 7655 7
Q ss_pred HHHHHHHhCCCcCEEEEccchhhcc
Q 021156 271 DLEKIKVAGIGRVDVTVGSALDIFG 295 (316)
Q Consensus 271 Di~~l~~~G~g~~gVivG~Al~~~~ 295 (316)
++.++.+.| +.++-|.+++ ..
T Consensus 215 ~~~~~i~~G--~~kinv~T~i--~~ 235 (281)
T PRK06806 215 DFKKCIQHG--IRKINVATAT--FN 235 (281)
T ss_pred HHHHHHHcC--CcEEEEhHHH--HH
Confidence 899999998 9999999999 54
No 274
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=96.66 E-value=0.005 Score=59.32 Aligned_cols=145 Identities=21% Similarity=0.090 Sum_probs=89.9
Q ss_pred HHHHHHcCCCEEEeCCee--------------ecC---C------CCCHHHHHHHHHHhcCceE-EEeeeeeecCCeeEE
Q 021156 147 SLSYIEEGATHVIVTSYV--------------FNN---G------QMDLERLKDLVRVVGKQRL-VLDLSCRKKDGKYAI 202 (316)
Q Consensus 147 ~~~~l~~Gad~VVigt~~--------------~~~---~------~~~~eli~ei~~~~G~~~I-vvslD~k~~~g~~~v 202 (316)
++++.++|+|-|=|-.+- ++| | ++..|.++++.+.+|++.+ .+-+... +.
T Consensus 155 A~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~--~~---- 228 (341)
T PF00724_consen 155 ARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPD--DF---- 228 (341)
T ss_dssp HHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETT--CS----
T ss_pred HHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeee--cc----
Confidence 455668899988773211 111 1 2456889999999987763 2223221 10
Q ss_pred EeCCcceecccCHHHHHHHHHHcCCCEEEE------eecC-----CccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHH
Q 021156 203 VTDRWQKFSDVYLDERVLDFLASYADEFLV------HGVD-----VEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMAD 271 (316)
Q Consensus 203 ~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilv------tdi~-----~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eD 271 (316)
..+.. +..+..++++.+.+.|++.+-+ +... ......++..++.+.+++.+++|||+.||+.+++.
T Consensus 229 -~~~g~--~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ 305 (341)
T PF00724_consen 229 -VEGGI--TLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQ 305 (341)
T ss_dssp -STTSH--HSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHH
T ss_pred -cCCCC--chHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhh
Confidence 01111 1112345678888888764421 2111 11112234567788888888999999999999999
Q ss_pred HHHHHHhCCCcCEEEEccchhhccCcccHHHH
Q 021156 272 LEKIKVAGIGRVDVTVGSALDIFGGNLAYKDV 303 (316)
Q Consensus 272 i~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~ 303 (316)
..++++.| .+|.|.+||++ ..+|-..+.+
T Consensus 306 ae~~l~~g-~~DlV~~gR~~--ladPd~~~k~ 334 (341)
T PF00724_consen 306 AEKALEEG-KADLVAMGRPL--LADPDLPNKA 334 (341)
T ss_dssp HHHHHHTT-STSEEEESHHH--HH-TTHHHHH
T ss_pred hHHHHhcC-CceEeeccHHH--HhCchHHHHH
Confidence 99999998 59999999999 8877544443
No 275
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=96.66 E-value=0.054 Score=50.84 Aligned_cols=153 Identities=14% Similarity=0.124 Sum_probs=97.4
Q ss_pred HhCCCc--EEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe-CC
Q 021156 130 HAYPGG--LQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT-DR 206 (316)
Q Consensus 130 ~~~~~p--l~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~-~g 206 (316)
+...+| +..+=|-..+++.+++++|++.|.++...+.. +-|.+..+++++...+ .-+++-.-. | .|.. .+
T Consensus 66 ~~~~VPV~lHLDH~~~~~~i~~ai~~GftSVMiD~S~l~~-eeNi~~t~~vv~~ah~--~gv~VEaEl--G--~i~g~e~ 138 (276)
T cd00947 66 ERASVPVALHLDHGSSFELIKRAIRAGFSSVMIDGSHLPF-EENVAKTKEVVELAHA--YGVSVEAEL--G--RIGGEED 138 (276)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHhCCCEEEeCCCCCCH-HHHHHHHHHHHHHHHH--cCCeEEEEE--e--eecCccC
Confidence 344455 45566655799999999999999998766532 1124555555544321 113333210 1 1210 00
Q ss_pred c---ceecccCHHHHHHHHHHcCCCEEEEeecCCccccCC----CCHHHHHHHhhcCCCcEEEEeCCCCH-HHHHHHHHh
Q 021156 207 W---QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLG----IDDELVALLGKYSPIPVTYAGGVTTM-ADLEKIKVA 278 (316)
Q Consensus 207 w---~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G----~d~eli~~l~~~~~iPVIasGGI~s~-eDi~~l~~~ 278 (316)
. .+..--++.+....+.+.|++.+-+.-=+.-|.+.+ .|+++++++.+.+++|+..-||=+.. +++.++.+.
T Consensus 139 ~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~ 218 (276)
T cd00947 139 GVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRKAIKL 218 (276)
T ss_pred CcccccccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHc
Confidence 0 000112466666666677999875433344455544 59999999999999999999998887 458889888
Q ss_pred CCCcCEEEEccch
Q 021156 279 GIGRVDVTVGSAL 291 (316)
Q Consensus 279 G~g~~gVivG~Al 291 (316)
| +..+=+++.+
T Consensus 219 G--i~KiNi~T~l 229 (276)
T cd00947 219 G--VCKININTDL 229 (276)
T ss_pred C--CeEEEeChHH
Confidence 8 9999999887
No 276
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=96.65 E-value=0.016 Score=56.24 Aligned_cols=72 Identities=19% Similarity=0.244 Sum_probs=53.3
Q ss_pred HHHHHHHHHcCCCEEEEeecCCccc--cCCC-CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccc
Q 021156 216 DERVLDFLASYADEFLVHGVDVEGK--KLGI-DDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA 290 (316)
Q Consensus 216 ~e~a~~~~~~Ga~~ilvtdi~~dG~--~~G~-d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~A 290 (316)
.+.++.+.+.|++.|.+-.-- |+ -.|+ -.+.+.++++.+ ++|||++|||++-.|+.+.+.+| ++.|.+|+.
T Consensus 236 ~~da~~~~~~G~~~i~vs~hG--Gr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLG--A~~v~igr~ 311 (356)
T PF01070_consen 236 PEDAKRAVDAGVDGIDVSNHG--GRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALG--ADAVGIGRP 311 (356)
T ss_dssp HHHHHHHHHTT-SEEEEESGT--GTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT---SEEEESHH
T ss_pred HHHHHHHHhcCCCEEEecCCC--cccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcC--CCeEEEccH
Confidence 367899999999998874321 22 1334 466777777644 69999999999999999999999 899999998
Q ss_pred h
Q 021156 291 L 291 (316)
Q Consensus 291 l 291 (316)
+
T Consensus 312 ~ 312 (356)
T PF01070_consen 312 F 312 (356)
T ss_dssp H
T ss_pred H
Confidence 8
No 277
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=96.64 E-value=0.03 Score=53.87 Aligned_cols=138 Identities=18% Similarity=0.140 Sum_probs=93.9
Q ss_pred HHHHHHHHcCCCEEEe--CCee------ecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHH
Q 021156 145 DNSLSYIEEGATHVIV--TSYV------FNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLD 216 (316)
Q Consensus 145 e~~~~~l~~Gad~VVi--gt~~------~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~ 216 (316)
+.++++.+.|++.+=+ |... .. +.+.++.+.+.+|+ .+.+.+|.. .+|... +..
T Consensus 145 ~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~----d~~~v~~ir~~~g~-~~~l~vDaN----------~~~~~~---~a~ 206 (357)
T cd03316 145 EEAKRAVAEGFTAVKLKVGGPDSGGEDLRE----DLARVRAVREAVGP-DVDLMVDAN----------GRWDLA---EAI 206 (357)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCcchHHHHH----HHHHHHHHHHhhCC-CCEEEEECC----------CCCCHH---HHH
Confidence 4577788899986543 4322 22 37899999999974 466788873 256421 355
Q ss_pred HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccC
Q 021156 217 ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGG 296 (316)
Q Consensus 217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g 296 (316)
++++.+.+.++..+ -. -....|++.++++++.+++||.+...+.+++|+.++.+.+ .++.+.+--.. .+|
T Consensus 207 ~~~~~l~~~~i~~i--Eq-----P~~~~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~-~~d~v~~k~~~--~GG 276 (357)
T cd03316 207 RLARALEEYDLFWF--EE-----PVPPDDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAG-AVDIIQPDVTK--VGG 276 (357)
T ss_pred HHHHHhCccCCCeE--cC-----CCCccCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhC-CCCEEecCccc--cCC
Confidence 66677766665432 11 1222378999999998999999999999999999999987 36666665555 555
Q ss_pred cccHHHHHHHHHhh
Q 021156 297 NLAYKDVVAWHAQQ 310 (316)
Q Consensus 297 ~~~~~~~~~~~~~~ 310 (316)
-....++.+++++.
T Consensus 277 i~~~~~i~~~a~~~ 290 (357)
T cd03316 277 ITEAKKIAALAEAH 290 (357)
T ss_pred HHHHHHHHHHHHHc
Confidence 55556666665553
No 278
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=96.62 E-value=0.0084 Score=54.56 Aligned_cols=72 Identities=17% Similarity=0.277 Sum_probs=46.0
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCC-----cccHHHHHHHH-HhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeee
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGAD-----PLSKAAAIEAL-HAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVF 165 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~-----~~~~~~i~~~v-~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~ 165 (316)
.||+ +|+++.+.|+. -+.-|.+- ...++..++.+ .+.++|++|++||- ..|+..+.+.|||-|.++|+.-
T Consensus 132 ~D~v-~akrL~d~Gca--avMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA 208 (247)
T PF05690_consen 132 DDPV-LAKRLEDAGCA--AVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIA 208 (247)
T ss_dssp S-HH-HHHHHHHTT-S--EBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEESHHHH
T ss_pred CCHH-HHHHHHHCCCC--EEEecccccccCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHh
Confidence 4666 77777777754 23333321 12344444444 56899999999996 6999999999999999999886
Q ss_pred cC
Q 021156 166 NN 167 (316)
Q Consensus 166 ~~ 167 (316)
+.
T Consensus 209 ~A 210 (247)
T PF05690_consen 209 KA 210 (247)
T ss_dssp TS
T ss_pred cc
Confidence 53
No 279
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=96.62 E-value=0.098 Score=49.23 Aligned_cols=153 Identities=14% Similarity=0.123 Sum_probs=96.9
Q ss_pred HhCCCc--EEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe-CC
Q 021156 130 HAYPGG--LQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT-DR 206 (316)
Q Consensus 130 ~~~~~p--l~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~-~g 206 (316)
++..+| +..+=|-..+.+++.+++|++.|.++...+.- +=|.+..+++++...+ .-+++-.-. | .|.. .+
T Consensus 69 ~~~~VPValHLDHg~~~e~i~~ai~~GFtSVM~DgS~lp~-eeNi~~T~~vv~~Ah~--~gv~VEaEl--G--~vgg~e~ 141 (282)
T TIGR01858 69 TTYNMPLALHLDHHESLDDIRQKVHAGVRSAMIDGSHFPF-AQNVKLVKEVVDFCHR--QDCSVEAEL--G--RLGGVED 141 (282)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcCCCEEeecCCCCCH-HHHHHHHHHHHHHHHH--cCCeEEEEE--E--ecCCccC
Confidence 344555 45565666799999999999999997665432 0025555555544311 113333210 1 1110 01
Q ss_pred c---ce--ecccCHHHHHHHHHHcCCCEEEEeecCCccccCC---CCHHHHHHHhhcCCCcEEEEeCCCCH-HHHHHHHH
Q 021156 207 W---QK--FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLG---IDDELVALLGKYSPIPVTYAGGVTTM-ADLEKIKV 277 (316)
Q Consensus 207 w---~~--~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G---~d~eli~~l~~~~~iPVIasGGI~s~-eDi~~l~~ 277 (316)
. .+ ..--++.+..+...+.|++.+-+--=+.-|.+.+ .|+++++++.+.+++|+..-||-+.+ +++.++.+
T Consensus 142 ~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~ 221 (282)
T TIGR01858 142 DLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIE 221 (282)
T ss_pred CCccccchhccCCHHHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHH
Confidence 0 00 0012566666777779999875433344565554 49999999999999999999887765 55777888
Q ss_pred hCCCcCEEEEccch
Q 021156 278 AGIGRVDVTVGSAL 291 (316)
Q Consensus 278 ~G~g~~gVivG~Al 291 (316)
.| +..+=|++.+
T Consensus 222 ~G--i~KiNi~T~l 233 (282)
T TIGR01858 222 LG--ICKVNVATEL 233 (282)
T ss_pred cC--CeEEEeCcHH
Confidence 88 9999999987
No 280
>PLN02826 dihydroorotate dehydrogenase
Probab=96.62 E-value=0.0065 Score=60.04 Aligned_cols=86 Identities=14% Similarity=0.118 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHcCCCcceEEE--------ecC--------C---cc---cHHHHHHHH-HhC--CCcEEEecCCCH-HHH
Q 021156 94 SAAEFANLYKEDGLTGGHAIM--------LGA--------D---PL---SKAAAIEAL-HAY--PGGLQVGGGINS-DNS 147 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvD--------Lda--------~---~~---~~~~i~~~v-~~~--~~pl~vGGGIr~-e~~ 147 (316)
+..++|+...+.|++++.+++ +.. + .+ ....++..+ +.+ .+||+.-|||.+ +|+
T Consensus 277 di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da 356 (409)
T PLN02826 277 DLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDA 356 (409)
T ss_pred HHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHH
Confidence 677899999999999999886 211 0 11 112222333 344 589999999985 999
Q ss_pred HHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156 148 LSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVV 182 (316)
Q Consensus 148 ~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~ 182 (316)
.+++.+||+.|-++|.+...| |+++.++.+..
T Consensus 357 ~e~i~AGAs~VQv~Ta~~~~G---p~~i~~I~~eL 388 (409)
T PLN02826 357 YKKIRAGASLVQLYTAFAYEG---PALIPRIKAEL 388 (409)
T ss_pred HHHHHhCCCeeeecHHHHhcC---HHHHHHHHHHH
Confidence 999999999999999987753 88888887765
No 281
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=96.61 E-value=0.011 Score=53.84 Aligned_cols=35 Identities=11% Similarity=0.165 Sum_probs=32.5
Q ss_pred CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156 133 PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN 167 (316)
Q Consensus 133 ~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~ 167 (316)
+..++|+|||+.+.+.++.++|||.+|.||+.+++
T Consensus 179 ~~~IeVDGGI~~~ti~~l~~aGaD~~V~GSalF~~ 213 (228)
T PRK08091 179 EKLISIDGSMTLELASYLKQHQIDWVVSGSALFSQ 213 (228)
T ss_pred CceEEEECCCCHHHHHHHHHCCCCEEEEChhhhCC
Confidence 46699999999999999999999999999999965
No 282
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=96.56 E-value=0.051 Score=51.40 Aligned_cols=178 Identities=18% Similarity=0.148 Sum_probs=102.1
Q ss_pred CHHHHHHHHHHcCCCcceEEEec-C-C----c----ccHHHH----HHHHHhCCCcEEEec--CC-C---H-HHHHHHHH
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLG-A-D----P----LSKAAA----IEALHAYPGGLQVGG--GI-N---S-DNSLSYIE 152 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLd-a-~----~----~~~~~i----~~~v~~~~~pl~vGG--GI-r---~-e~~~~~l~ 152 (316)
|+. -|+..+++|++.+++-=.. + . + ....++ .++.+.+++|+++++ |. . . ..++++.+
T Consensus 26 Da~-SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~ 104 (292)
T PRK11320 26 NAY-HALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIK 104 (292)
T ss_pred CHH-HHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHH
Confidence 666 6677777787755443221 1 0 1 123333 333345789999863 22 3 2 55899999
Q ss_pred cCCCEEEe-CCeeecC-----C-CC-CH-HHHHHHHHHhcCce-EEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156 153 EGATHVIV-TSYVFNN-----G-QM-DL-ERLKDLVRVVGKQR-LVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF 222 (316)
Q Consensus 153 ~Gad~VVi-gt~~~~~-----~-~~-~~-eli~ei~~~~G~~~-IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~ 222 (316)
+|+.-+.| +...-+. + ++ ++ +++.+|....-..+ .-+-|-.|. |- ....|+. +.++.++.+
T Consensus 105 aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART-Da---~~~~g~d-----eAI~Ra~aY 175 (292)
T PRK11320 105 AGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMART-DA---LAVEGLD-----AAIERAQAY 175 (292)
T ss_pred cCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEec-Cc---ccccCHH-----HHHHHHHHH
Confidence 99999888 3221110 1 11 22 34444443321100 001111111 10 0112222 467889999
Q ss_pred HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcE---EEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPV---TYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPV---IasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
.+.|++.+.++... +.+.++++.+.++.|+ ...+|-...-++.+|.++| +.-|+.|.++
T Consensus 176 ~eAGAD~ifi~~~~--------~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~L~~lG--v~~v~~~~~~ 237 (292)
T PRK11320 176 VEAGADMIFPEAMT--------ELEMYRRFADAVKVPILANITEFGATPLFTTEELASAG--VAMVLYPLSA 237 (292)
T ss_pred HHcCCCEEEecCCC--------CHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcC--CcEEEEChHH
Confidence 99999999886643 5788899988888888 3345543334577788888 8889999766
No 283
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.55 E-value=0.11 Score=48.97 Aligned_cols=155 Identities=15% Similarity=0.148 Sum_probs=96.3
Q ss_pred HHHhCCCcE--EEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe-
Q 021156 128 ALHAYPGGL--QVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT- 204 (316)
Q Consensus 128 ~v~~~~~pl--~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~- 204 (316)
..++..+|+ ..+=|-..+.+++++++|++.|.++...+.- +=|.+..+++++...+ .-+++-.-. | .|..
T Consensus 69 ~A~~~~VPV~lHLDHg~~~e~i~~Ai~~GftSVM~DgS~l~~-eeNi~~T~~vv~~Ah~--~gv~VEaEl--G--~vgg~ 141 (284)
T PRK09195 69 AAKQYHHPLALHLDHHEKFDDIAQKVRSGVRSVMIDGSHLPF-AQNISLVKEVVDFCHR--FDVSVEAEL--G--RLGGQ 141 (284)
T ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEeCCCCCCH-HHHHHHHHHHHHHHHH--cCCEEEEEE--e--cccCc
Confidence 334455554 4555556799999999999999997665431 0024555555543311 113333210 1 1110
Q ss_pred CCc----cee-cccCHHHHHHHHHHcCCCEEEEeecCCccccCC---CCHHHHHHHhhcCCCcEEEEeCCCCH-HHHHHH
Q 021156 205 DRW----QKF-SDVYLDERVLDFLASYADEFLVHGVDVEGKKLG---IDDELVALLGKYSPIPVTYAGGVTTM-ADLEKI 275 (316)
Q Consensus 205 ~gw----~~~-~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G---~d~eli~~l~~~~~iPVIasGGI~s~-eDi~~l 275 (316)
.+. ... .--++.+..+...+.|++.+-+--=+.-|.+.+ .|+++++++.+.+++|+..-||=+.+ ++++++
T Consensus 142 e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~a 221 (284)
T PRK09195 142 EDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQT 221 (284)
T ss_pred ccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHH
Confidence 011 000 012566666666678999775432244556544 59999999999999999998887655 557778
Q ss_pred HHhCCCcCEEEEccch
Q 021156 276 KVAGIGRVDVTVGSAL 291 (316)
Q Consensus 276 ~~~G~g~~gVivG~Al 291 (316)
.+.| +..+=|++.+
T Consensus 222 i~~G--i~KiNi~T~l 235 (284)
T PRK09195 222 IKLG--ICKVNVATEL 235 (284)
T ss_pred HHcC--CeEEEeCcHH
Confidence 8888 9999999988
No 284
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=96.55 E-value=0.009 Score=52.76 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=32.6
Q ss_pred CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156 133 PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN 167 (316)
Q Consensus 133 ~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~ 167 (316)
+.|+.++|||+.+++..+.+.|+|.+++||+.++.
T Consensus 166 ~~pi~v~GGI~~env~~~~~~gad~iivgsai~~~ 200 (211)
T cd00429 166 NLLIEVDGGINLETIPLLAEAGADVLVAGSALFGS 200 (211)
T ss_pred CeEEEEECCCCHHHHHHHHHcCCCEEEECHHHhCC
Confidence 48999999999999999999999999999999864
No 285
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=96.55 E-value=0.018 Score=51.94 Aligned_cols=73 Identities=18% Similarity=0.088 Sum_probs=52.7
Q ss_pred HHHHHHHHHHcCCCcceEEEecCCc---c---cHHHHHHHHH-hCCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeec
Q 021156 95 AAEFANLYKEDGLTGGHAIMLGADP---L---SKAAAIEALH-AYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 95 p~e~a~~~~~~G~~~l~lvDLda~~---~---~~~~i~~~v~-~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~ 166 (316)
+.+.++...+.|++.+++....... . .....++.++ ..++|+.++|||+. +++.+++..||+.|++||.+..
T Consensus 111 ~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~ 190 (236)
T cd04730 111 SVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALALGADGVQMGTRFLA 190 (236)
T ss_pred CHHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhc
Confidence 3456777778898877665443211 1 1223334443 46899999999995 9999999999999999999887
Q ss_pred C
Q 021156 167 N 167 (316)
Q Consensus 167 ~ 167 (316)
.
T Consensus 191 ~ 191 (236)
T cd04730 191 T 191 (236)
T ss_pred C
Confidence 6
No 286
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=96.55 E-value=0.0082 Score=58.44 Aligned_cols=72 Identities=19% Similarity=0.183 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCCCEEEEeecCCcccc--CCC-CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccc
Q 021156 216 DERVLDFLASYADEFLVHGVDVEGKK--LGI-DDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA 290 (316)
Q Consensus 216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~--~G~-d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~A 290 (316)
.+.++.+.+.|++.|++-.- .|+. ..+ -.+.+.++.+.+ ++|||+.|||++-.|+.+++.+| +++|.+|+.
T Consensus 235 ~~dA~~a~~~Gvd~I~Vsnh--GGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALG--A~aV~iGr~ 310 (367)
T PLN02493 235 GEDARIAIQAGAAGIIVSNH--GARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG--ASGIFIGRP 310 (367)
T ss_pred HHHHHHHHHcCCCEEEECCC--CCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcC--CCEEEEcHH
Confidence 47888999999999876332 1222 122 356677776543 59999999999999999999999 899999998
Q ss_pred h
Q 021156 291 L 291 (316)
Q Consensus 291 l 291 (316)
+
T Consensus 311 ~ 311 (367)
T PLN02493 311 V 311 (367)
T ss_pred H
Confidence 8
No 287
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=96.52 E-value=0.069 Score=50.41 Aligned_cols=150 Identities=17% Similarity=0.189 Sum_probs=94.7
Q ss_pred CCcE--EEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe-CC---
Q 021156 133 PGGL--QVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT-DR--- 206 (316)
Q Consensus 133 ~~pl--~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~-~g--- 206 (316)
.+|+ ..+=|-..+.+++.+++|++.|.++...+.- +=|.+..+++++...+- -+++-.-. | .|.. .+
T Consensus 77 ~VPV~lHLDHg~~~e~i~~ai~~GftSVMiDgS~lp~-eeNi~~T~~vv~~Ah~~--gv~VEaEl--G--~vgg~e~~~~ 149 (288)
T TIGR00167 77 GVPVALHLDHGASEEDCAQAVKAGFSSVMIDGSHEPF-EENIELTKKVVERAHKM--GVSVEAEL--G--TLGGEEDGVS 149 (288)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcCCCEEEecCCCCCH-HHHHHHHHHHHHHHHHc--CCEEEEEE--e--eccCccCCcc
Confidence 5554 4455556799999999999999997665531 01255555555443111 13333210 1 1110 00
Q ss_pred -cceec-ccCHHHHHHHHHHcCCCEEEEeecCCccccCC----CCHHHHHHHhhcCCCcEEEEeCCCCH-HHHHHHHHhC
Q 021156 207 -WQKFS-DVYLDERVLDFLASYADEFLVHGVDVEGKKLG----IDDELVALLGKYSPIPVTYAGGVTTM-ADLEKIKVAG 279 (316)
Q Consensus 207 -w~~~~-~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G----~d~eli~~l~~~~~iPVIasGGI~s~-eDi~~l~~~G 279 (316)
..... --++.+..+...+.|++.+-+--=+.-|.+.+ .|+++++++.+.+++|+..-||=+.. ++++++.+.|
T Consensus 150 ~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~~~ai~~G 229 (288)
T TIGR00167 150 VADESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVNLPLVLHGGSGIPDEEIKKAISLG 229 (288)
T ss_pred cccccccCCCHHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcC
Confidence 00000 11455555555567999875433234444432 69999999999999999999998887 5788899988
Q ss_pred CCcCEEEEccch
Q 021156 280 IGRVDVTVGSAL 291 (316)
Q Consensus 280 ~g~~gVivG~Al 291 (316)
+..+=|++.+
T Consensus 230 --i~KiNi~T~l 239 (288)
T TIGR00167 230 --VVKVNIDTEL 239 (288)
T ss_pred --CeEEEcChHH
Confidence 9999999877
No 288
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=96.51 E-value=0.12 Score=49.48 Aligned_cols=147 Identities=12% Similarity=0.116 Sum_probs=93.8
Q ss_pred CCc--EEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHH---HhcCceEEEeeeeeecCCeeEEEe-CC
Q 021156 133 PGG--LQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVR---VVGKQRLVLDLSCRKKDGKYAIVT-DR 206 (316)
Q Consensus 133 ~~p--l~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~---~~G~~~IvvslD~k~~~g~~~v~~-~g 206 (316)
.+| +..+=|-..+.+++.+++|.+.|.++...+.- +-|.+..+++++ .+| +++-.-. | .+.. .+
T Consensus 85 ~VPV~lHLDHg~~~e~i~~ai~~GftSVMiD~S~lp~-eeNI~~T~evv~~Ah~~G-----vsVEaEl--G--~igg~ed 154 (321)
T PRK07084 85 PIPIVLHLDHGDSFELCKDCIDSGFSSVMIDGSHLPY-EENVALTKKVVEYAHQFD-----VTVEGEL--G--VLAGVED 154 (321)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcCCCEEEeeCCCCCH-HHHHHHHHHHHHHHHHcC-----CeEEEEE--e--eecCccC
Confidence 455 56666666799999999999999997665532 002445555544 344 3443210 1 1110 00
Q ss_pred c---ceecccCHHHHHHHHHHcCCCEEEEeecCCccccCC--------CCHHHHHHHhhcC-CCcEEEEeCCCC------
Q 021156 207 W---QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLG--------IDDELVALLGKYS-PIPVTYAGGVTT------ 268 (316)
Q Consensus 207 w---~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G--------~d~eli~~l~~~~-~iPVIasGGI~s------ 268 (316)
. ....--++.+..+.+.+.|++.+-+--=+.-|.+.+ .|+++++++.+.+ ++|+..-||=..
T Consensus 155 ~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~ 234 (321)
T PRK07084 155 EVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVK 234 (321)
T ss_pred CccCcccccCCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHH
Confidence 0 010012566666666678999774322234444432 5999999999888 799999998744
Q ss_pred ----------------HHHHHHHHHhCCCcCEEEEccch
Q 021156 269 ----------------MADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 269 ----------------~eDi~~l~~~G~g~~gVivG~Al 291 (316)
.++++++.+.| +..|=+++.+
T Consensus 235 ~~~~~g~~~~~~~Gi~~e~~~kai~~G--I~KINi~Tdl 271 (321)
T PRK07084 235 TINEYGGKLKDAIGIPEEQLRKAAKSA--VCKINIDSDG 271 (321)
T ss_pred HHHHhcCccccCCCCCHHHHHHHHHcC--CceeccchHH
Confidence 48899999998 8889999876
No 289
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=96.48 E-value=0.0082 Score=53.68 Aligned_cols=60 Identities=32% Similarity=0.302 Sum_probs=49.3
Q ss_pred CHHHHHHHhhcCCCcE--EEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156 245 DDELVALLGKYSPIPV--TYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA 308 (316)
Q Consensus 245 d~eli~~l~~~~~iPV--IasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~ 308 (316)
.++++++..+.-.+|| +++||+.++.|..-+.++| |+||.+|+.+ |...=+++.+.+.++
T Consensus 195 P~dLv~~t~q~GrlPVV~FAaGGvaTPADAALmMQLG--CdGVFVGSgi--Fks~dP~k~a~aiVq 256 (296)
T KOG1606|consen 195 PYDLVKQTKQLGRLPVVNFAAGGVATPADAALMMQLG--CDGVFVGSGI--FKSGDPVKRARAIVQ 256 (296)
T ss_pred cHHHHHHHHHcCCCceEEecccCcCChhHHHHHHHcC--CCeEEecccc--ccCCCHHHHHHHHHH
Confidence 5678888877777887 7999999999999999999 9999999999 776656665555443
No 290
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=96.46 E-value=0.012 Score=53.01 Aligned_cols=72 Identities=18% Similarity=0.020 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHcCCCcceE--EEecCC-----cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeee
Q 021156 94 SAAEFANLYKEDGLTGGHA--IMLGAD-----PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVF 165 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~l--vDLda~-----~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~ 165 (316)
+|. -+....+.|++.+.+ ...... ......+.++.+.+++|+.++|||+ .++++++++.|||-|++||++.
T Consensus 132 t~~-ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~ 210 (219)
T cd04729 132 TLE-EALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVVVGSAIT 210 (219)
T ss_pred CHH-HHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHh
Confidence 454 446666778886532 122111 1223334444345689999999998 5999999999999999999987
Q ss_pred c
Q 021156 166 N 166 (316)
Q Consensus 166 ~ 166 (316)
+
T Consensus 211 ~ 211 (219)
T cd04729 211 R 211 (219)
T ss_pred C
Confidence 7
No 291
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.45 E-value=0.13 Score=48.41 Aligned_cols=154 Identities=14% Similarity=0.154 Sum_probs=97.2
Q ss_pred HHhCCCcE--EEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe-C
Q 021156 129 LHAYPGGL--QVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT-D 205 (316)
Q Consensus 129 v~~~~~pl--~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~-~ 205 (316)
.++..+|+ ..+=|-..+.+++++++|.+.|.++...+.- +=|.+..+++++... ..-+++-.-. | .|.. .
T Consensus 70 A~~~~VPValHLDH~~~~e~i~~ai~~GftSVM~DgS~lp~-eeNi~~T~~vv~~Ah--~~gvsVEaEl--G--~vgg~e 142 (284)
T PRK12857 70 AEKASVPVALHLDHGTDFEQVMKCIRNGFTSVMIDGSKLPL-EENIALTKKVVEIAH--AVGVSVEAEL--G--KIGGTE 142 (284)
T ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEEEeCCCCCH-HHHHHHHHHHHHHHH--HcCCEEEEEe--e--ecCCcc
Confidence 34445554 5555656799999999999999997665432 012555555554431 1113443310 1 1210 0
Q ss_pred Cc----cee-cccCHHHHHHHHHHcCCCEEEEeecCCccccCC---CCHHHHHHHhhcCCCcEEEEeCCCCH-HHHHHHH
Q 021156 206 RW----QKF-SDVYLDERVLDFLASYADEFLVHGVDVEGKKLG---IDDELVALLGKYSPIPVTYAGGVTTM-ADLEKIK 276 (316)
Q Consensus 206 gw----~~~-~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G---~d~eli~~l~~~~~iPVIasGGI~s~-eDi~~l~ 276 (316)
+. ... .--++.+..+...+.|++.+-+--=+.-|.+.| .|+++++++.+.+++|+..-||=+.+ ++++++.
T Consensus 143 ~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai 222 (284)
T PRK12857 143 DDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKAI 222 (284)
T ss_pred CCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHH
Confidence 11 000 012566666666778999775433345566655 49999999999899999998887765 5577788
Q ss_pred HhCCCcCEEEEccch
Q 021156 277 VAGIGRVDVTVGSAL 291 (316)
Q Consensus 277 ~~G~g~~gVivG~Al 291 (316)
+.| +..+=|++.+
T Consensus 223 ~~G--i~KiNi~T~~ 235 (284)
T PRK12857 223 SLG--VRKVNIDTNI 235 (284)
T ss_pred HcC--CeEEEeCcHH
Confidence 888 9999999877
No 292
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=96.44 E-value=0.012 Score=53.38 Aligned_cols=76 Identities=20% Similarity=0.296 Sum_probs=55.9
Q ss_pred eecCCccCHHHHHHHHHHcCCCcceEEEecCC-----cccHHHHHHHH-HhCCCcEEEecCCC-HHHHHHHHHcCCCEEE
Q 021156 87 TNFESDKSAAEFANLYKEDGLTGGHAIMLGAD-----PLSKAAAIEAL-HAYPGGLQVGGGIN-SDNSLSYIEEGATHVI 159 (316)
Q Consensus 87 ~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~-----~~~~~~i~~~v-~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VV 159 (316)
-+|. ++||+ +|+++.+.|+- -+.-|.+- ...++..++++ .+..+|++|+.||- ..|+-...+.|||-|.
T Consensus 134 lPY~-~dD~v-~arrLee~Gca--avMPl~aPIGSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL 209 (262)
T COG2022 134 LPYT-TDDPV-LARRLEEAGCA--AVMPLGAPIGSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVL 209 (262)
T ss_pred eecc-CCCHH-HHHHHHhcCce--EeccccccccCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceee
Confidence 4555 36888 99999998854 23344321 23455555555 46799999999996 6999999999999999
Q ss_pred eCCeeec
Q 021156 160 VTSYVFN 166 (316)
Q Consensus 160 igt~~~~ 166 (316)
++|+.-.
T Consensus 210 ~NTAiA~ 216 (262)
T COG2022 210 LNTAIAR 216 (262)
T ss_pred hhhHhhc
Confidence 9998753
No 293
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=96.43 E-value=0.01 Score=57.13 Aligned_cols=84 Identities=14% Similarity=0.177 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHcCCCcceEEE----ecCCc---------ccHHHHHHHHHhC-CCcEEEecCCC-HHHHHHHHHcCCCEE
Q 021156 94 SAAEFANLYKEDGLTGGHAIM----LGADP---------LSKAAAIEALHAY-PGGLQVGGGIN-SDNSLSYIEEGATHV 158 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvD----Lda~~---------~~~~~i~~~v~~~-~~pl~vGGGIr-~e~~~~~l~~Gad~V 158 (316)
+..++++.+.++|++.+++-- +.+-. .+.+.+.++.+.+ ++|++..|||+ .+|++++++ |||.|
T Consensus 152 ~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgV 230 (333)
T PRK11815 152 FLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGV 230 (333)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEE
Confidence 356889999999998877642 11111 1244444444454 79999999998 599999997 79999
Q ss_pred EeCCeeecCCCCCHHHHHHHHHHh
Q 021156 159 IVTSYVFNNGQMDLERLKDLVRVV 182 (316)
Q Consensus 159 Vigt~~~~~~~~~~eli~ei~~~~ 182 (316)
.+|...+.| |.++.++.+.+
T Consensus 231 mIGRa~l~n----P~~~~~~~~~~ 250 (333)
T PRK11815 231 MIGRAAYHN----PYLLAEVDREL 250 (333)
T ss_pred EEcHHHHhC----CHHHHHHHHHh
Confidence 999999998 99999987654
No 294
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=96.43 E-value=0.0093 Score=56.38 Aligned_cols=70 Identities=21% Similarity=0.164 Sum_probs=51.0
Q ss_pred HHHHHHHHcCCCcceEEEe-----cCCcccHHHHHHHHHhC--CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeec
Q 021156 97 EFANLYKEDGLTGGHAIML-----GADPLSKAAAIEALHAY--PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvDL-----da~~~~~~~i~~~v~~~--~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~ 166 (316)
+.|+...++|++.+.+..- +........+.++.+.+ .+|++..|||++ +|+.+++..||+-|.+|+.++.
T Consensus 184 ~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~ 261 (299)
T cd02809 184 EDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLY 261 (299)
T ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHH
Confidence 5788888999887655421 11123344444444445 499999999995 9999999999999999998764
No 295
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=96.42 E-value=0.073 Score=50.37 Aligned_cols=147 Identities=15% Similarity=0.211 Sum_probs=90.3
Q ss_pred CcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceeccc
Q 021156 134 GGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDV 213 (316)
Q Consensus 134 ~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~ 213 (316)
+-+-.+=| ..+.++++++.|++.|-+........+ +.+..+++++...+-.+.+..-+-...|. .-...+. +..
T Consensus 80 V~lHLDH~-~~~~i~~ai~~GftSVm~d~S~l~~eE-ni~~t~~v~~~a~~~gv~vE~ElG~i~g~-ed~~~g~---s~~ 153 (293)
T PRK07315 80 VAIHLDHG-HYEDALECIEVGYTSIMFDGSHLPVEE-NLKLAKEVVEKAHAKGISVEAEVGTIGGE-EDGIIGK---GEL 153 (293)
T ss_pred EEEECCCC-CHHHHHHHHHcCCCEEEEcCCCCCHHH-HHHHHHHHHHHHHHcCCEEEEecCcccCc-CccccCc---cCC
Confidence 33455667 678999999999999999766554200 13444444433211123333322100110 0000111 111
Q ss_pred CHHHHHHHHHHcCCCEEEEe--ecCCcccc----CCCCHHHHHHHhhcC-CCcEEEEeC--CCCHHHHHHHHHhCCCcCE
Q 021156 214 YLDERVLDFLASYADEFLVH--GVDVEGKK----LGIDDELVALLGKYS-PIPVTYAGG--VTTMADLEKIKVAGIGRVD 284 (316)
Q Consensus 214 ~~~e~a~~~~~~Ga~~ilvt--di~~dG~~----~G~d~eli~~l~~~~-~iPVIasGG--I~s~eDi~~l~~~G~g~~g 284 (316)
.-.+.++++.+.|++.+-+- .+ -|.+ ...|++.++++++.+ ++|+.+-|| +.. +++.++.+.| +.+
T Consensus 154 t~peea~~f~~tgvD~LAv~iG~v--HG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~~-e~~~~~i~~G--i~K 228 (293)
T PRK07315 154 APIEDAKAMVETGIDFLAAGIGNI--HGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGIPD-DQIQEAIKLG--VAK 228 (293)
T ss_pred CCHHHHHHHHHcCCCEEeeccccc--cccCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCCCH-HHHHHHHHcC--CCE
Confidence 22355667778999987543 22 1332 246999999999988 599999999 654 7799999998 999
Q ss_pred EEEccch
Q 021156 285 VTVGSAL 291 (316)
Q Consensus 285 VivG~Al 291 (316)
+-|++++
T Consensus 229 iNv~T~i 235 (293)
T PRK07315 229 VNVNTEC 235 (293)
T ss_pred EEEccHH
Confidence 9999999
No 296
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=96.38 E-value=0.018 Score=51.94 Aligned_cols=74 Identities=18% Similarity=0.165 Sum_probs=48.9
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCC---cccHHHHHHHH---Hh-C----CCcEEEecCCCHHHHHHHHHcCCCEEEeC
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGAD---PLSKAAAIEAL---HA-Y----PGGLQVGGGINSDNSLSYIEEGATHVIVT 161 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~---~~~~~~i~~~v---~~-~----~~pl~vGGGIr~e~~~~~l~~Gad~VVig 161 (316)
..|++..+.+... ++.+.+.-.+-+ +.-.+.+.+.+ ++ . +.-|+|+|||+.+.+..+.++|||.+|.|
T Consensus 119 ~Tp~~~i~~~l~~-vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~~t~~~~~~AGad~~VaG 197 (220)
T COG0036 119 ATPLEALEPVLDD-VDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINLETIKQLAAAGADVFVAG 197 (220)
T ss_pred CCCHHHHHHHHhh-CCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCHHHHHHHHHcCCCEEEEE
Confidence 3566666655443 555555555522 22222222222 21 1 35699999999999999999999999999
Q ss_pred CeeecC
Q 021156 162 SYVFNN 167 (316)
Q Consensus 162 t~~~~~ 167 (316)
|+.+.+
T Consensus 198 SalF~~ 203 (220)
T COG0036 198 SALFGA 203 (220)
T ss_pred EEEeCC
Confidence 999986
No 297
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=96.35 E-value=0.018 Score=52.48 Aligned_cols=71 Identities=23% Similarity=0.283 Sum_probs=53.9
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCccccCCC---CHHHHHHHhhcCCCc----EEEEeCC------CCHHHHHHHHHhCCC
Q 021156 215 LDERVLDFLASYADEFLVHGVDVEGKKLGI---DDELVALLGKYSPIP----VTYAGGV------TTMADLEKIKVAGIG 281 (316)
Q Consensus 215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~---d~eli~~l~~~~~iP----VIasGGI------~s~eDi~~l~~~G~g 281 (316)
+...++.+.+.|++.+= |.-. +. .|. |.+.++++.+.+++| |.++||+ ++.++..+++++|
T Consensus 148 I~~a~ria~e~GaD~vK-t~tg--~~-~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aG-- 221 (236)
T PF01791_consen 148 IARAARIAAELGADFVK-TSTG--KP-VGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIEAG-- 221 (236)
T ss_dssp HHHHHHHHHHTT-SEEE-EE-S--SS-SCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTT--
T ss_pred HHHHHHHHHHhCCCEEE-ecCC--cc-ccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHHcC--
Confidence 45567788899999652 3332 22 444 566777777767889 9999999 9999999999999
Q ss_pred c--CEEEEccch
Q 021156 282 R--VDVTVGSAL 291 (316)
Q Consensus 282 ~--~gVivG~Al 291 (316)
+ .|++.|+.+
T Consensus 222 a~~~G~~~Gr~i 233 (236)
T PF01791_consen 222 ADRIGTSSGRNI 233 (236)
T ss_dssp HSEEEEEEHHHH
T ss_pred ChhHHHHHHHHH
Confidence 6 999999998
No 298
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=96.32 E-value=0.1 Score=49.62 Aligned_cols=149 Identities=16% Similarity=0.141 Sum_probs=95.9
Q ss_pred CcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEE-eCCc----c
Q 021156 134 GGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIV-TDRW----Q 208 (316)
Q Consensus 134 ~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~-~~gw----~ 208 (316)
+-+-.+=|-..|.+++++++|.+.|.++...+.- +=|.+..+++++.... .-+++-.-. | .|. ..+. .
T Consensus 77 ValHLDHg~~~e~i~~ai~~GftSVM~DgS~l~~-eeNi~~T~~vve~Ah~--~gv~VEaEl--G--~vgg~ed~~~~~~ 149 (307)
T PRK05835 77 VALHLDHGTTFESCEKAVKAGFTSVMIDASHHAF-EENLELTSKVVKMAHN--AGVSVEAEL--G--RLMGIEDNISVDE 149 (307)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCH-HHHHHHHHHHHHHHHH--cCCEEEEEe--c--ccCCccCCccccc
Confidence 3345566667799999999999999997654321 0025555555543211 113443310 1 121 0011 0
Q ss_pred -eecccCHHHHHHHHHHcCCCEEEEeecCCccccC--C---CCHHHHHHHhhcCCCcEEEEeCCCCHH------------
Q 021156 209 -KFSDVYLDERVLDFLASYADEFLVHGVDVEGKKL--G---IDDELVALLGKYSPIPVTYAGGVTTMA------------ 270 (316)
Q Consensus 209 -~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~--G---~d~eli~~l~~~~~iPVIasGGI~s~e------------ 270 (316)
+..--++.+..+...+.|++.+-+--=+.-|.+. | .|++.++++++.+++|+..-||=+.++
T Consensus 150 ~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~iPLVLHGgSGip~e~~~~~~~~g~~ 229 (307)
T PRK05835 150 KDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRKSYLDAGGD 229 (307)
T ss_pred ccccCCCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCchHHhhhhhhhccc
Confidence 0001246666666667899986443335556665 4 499999999999999999999998877
Q ss_pred ----------HHHHHHHhCCCcCEEEEccch
Q 021156 271 ----------DLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 271 ----------Di~~l~~~G~g~~gVivG~Al 291 (316)
++.++.+.| +..+=|++.+
T Consensus 230 ~~~~~g~~~e~~~kai~~G--I~KiNi~T~l 258 (307)
T PRK05835 230 LKGSKGVPFEFLQESVKGG--INKVNTDTDL 258 (307)
T ss_pred cccccCCCHHHHHHHHHcC--ceEEEeChHH
Confidence 688888888 8999999877
No 299
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=96.30 E-value=0.025 Score=52.89 Aligned_cols=72 Identities=21% Similarity=0.272 Sum_probs=49.3
Q ss_pred HHHHHHHHcCCCEEEEeecCCccccCCCCH-HHHHHHhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhc
Q 021156 217 ERVLDFLASYADEFLVHGVDVEGKKLGIDD-ELVALLGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIF 294 (316)
Q Consensus 217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~-eli~~l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~ 294 (316)
+.+.++.+.|++.+.+-.+..+ ++ +.++.+++. .++|++++||| +++.+.++.+.| ++++++|+.. |
T Consensus 194 eea~~A~~~gaD~I~ld~~~p~------~l~~~~~~~~~~~~~i~i~AsGGI-~~~ni~~~~~~G--vd~I~vsai~--~ 262 (272)
T cd01573 194 EEALAAAEAGADILQLDKFSPE------ELAELVPKLRSLAPPVLLAAAGGI-NIENAAAYAAAG--ADILVTSAPY--Y 262 (272)
T ss_pred HHHHHHHHcCCCEEEECCCCHH------HHHHHHHHHhccCCCceEEEECCC-CHHHHHHHHHcC--CcEEEEChhh--c
Confidence 5566677899997765444332 22 234434433 37999999999 889999999998 9999666554 4
Q ss_pred cCccc
Q 021156 295 GGNLA 299 (316)
Q Consensus 295 ~g~~~ 299 (316)
..+++
T Consensus 263 a~~~D 267 (272)
T cd01573 263 AKPAD 267 (272)
T ss_pred Ccccc
Confidence 44443
No 300
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=96.27 E-value=0.026 Score=51.36 Aligned_cols=35 Identities=31% Similarity=0.530 Sum_probs=32.3
Q ss_pred CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156 133 PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN 167 (316)
Q Consensus 133 ~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~ 167 (316)
+..++|+|||+.+.+..+.++|||.+|+||+.++.
T Consensus 171 ~~~IeVDGGI~~eti~~l~~aGaDi~V~GSaiF~~ 205 (223)
T PRK08745 171 PIRLEIDGGVKADNIGAIAAAGADTFVAGSAIFNA 205 (223)
T ss_pred CeeEEEECCCCHHHHHHHHHcCCCEEEEChhhhCC
Confidence 46799999999999999999999999999999864
No 301
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=96.27 E-value=0.013 Score=51.82 Aligned_cols=34 Identities=32% Similarity=0.501 Sum_probs=32.0
Q ss_pred CcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156 134 GGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN 167 (316)
Q Consensus 134 ~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~ 167 (316)
+|+.++|||+.+++.++++.|||.+++||+.++.
T Consensus 166 ~~i~v~GGI~~env~~l~~~gad~iivgsai~~~ 199 (210)
T TIGR01163 166 ILIEVDGGVNDDNARELAEAGADILVAGSAIFGA 199 (210)
T ss_pred ceEEEECCcCHHHHHHHHHcCCCEEEEChHHhCC
Confidence 7899999999999999999999999999999874
No 302
>PRK08005 epimerase; Validated
Probab=96.26 E-value=0.022 Score=51.27 Aligned_cols=73 Identities=16% Similarity=0.129 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCC---cccHHHHHHHH---HhC--CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeee
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGAD---PLSKAAAIEAL---HAY--PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVF 165 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~---~~~~~~i~~~v---~~~--~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~ 165 (316)
.|++..+.+... ++.+.+.-.+-+ +.-.+.+.+.+ ++. ...++|+|||+.+.+..+.++|||.+|+||+.+
T Consensus 117 Tp~~~i~~~l~~-vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI~~~~i~~l~~aGad~~V~GsaiF 195 (210)
T PRK08005 117 TPLLPYRYLALQ-LDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWADGGITLRAARLLAAAGAQHLVIGRALF 195 (210)
T ss_pred CCHHHHHHHHHh-cCEEEEEEecCCCccceecHHHHHHHHHHHHhcccCCEEEECCCCHHHHHHHHHCCCCEEEEChHhh
Confidence 455555555432 555555555532 22222222222 221 236999999999999999999999999999999
Q ss_pred cC
Q 021156 166 NN 167 (316)
Q Consensus 166 ~~ 167 (316)
++
T Consensus 196 ~~ 197 (210)
T PRK08005 196 TT 197 (210)
T ss_pred CC
Confidence 64
No 303
>PRK14057 epimerase; Provisional
Probab=96.25 E-value=0.03 Score=51.78 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCC---cc----cHHHHH---HHHHh--CCCcEEEecCCCHHHHHHHHHcCCCEEEeC
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGAD---PL----SKAAAI---EALHA--YPGGLQVGGGINSDNSLSYIEEGATHVIVT 161 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~---~~----~~~~i~---~~v~~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVig 161 (316)
.|++..+.+... ++.+-+.-.+-+ +. ..+.+. +...+ .+..|+|+|||+.+.+..+.++|||.+|.|
T Consensus 143 Tp~e~i~~~l~~-vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~G 221 (254)
T PRK14057 143 TPLDVIIPILSD-VEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSG 221 (254)
T ss_pred CCHHHHHHHHHh-CCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEC
Confidence 466666666543 666666666633 21 122222 22222 246799999999999999999999999999
Q ss_pred CeeecC
Q 021156 162 SYVFNN 167 (316)
Q Consensus 162 t~~~~~ 167 (316)
|+.+++
T Consensus 222 SalF~~ 227 (254)
T PRK14057 222 SALFRD 227 (254)
T ss_pred hHhhCC
Confidence 999864
No 304
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=96.23 E-value=0.015 Score=55.58 Aligned_cols=83 Identities=13% Similarity=0.004 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCC-----cc-cHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHH-cCCCEEEeCCeee
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGAD-----PL-SKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIE-EGATHVIVTSYVF 165 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~-----~~-~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~-~Gad~VVigt~~~ 165 (316)
+..++++.+.++|++.++|--=... +. +.+.+.++.+.+++|++.-|||+ .+|++++++ .|||.|.||..++
T Consensus 149 ~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l 228 (312)
T PRK10550 149 RKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGAL 228 (312)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhH
Confidence 3568999999999887766311111 11 34444444456889999999998 599999885 7899999999999
Q ss_pred cCCCCCHHHHHHHHH
Q 021156 166 NNGQMDLERLKDLVR 180 (316)
Q Consensus 166 ~~~~~~~eli~ei~~ 180 (316)
.| |.+++++..
T Consensus 229 ~n----P~lf~~~~~ 239 (312)
T PRK10550 229 NI----PNLSRVVKY 239 (312)
T ss_pred hC----cHHHHHhhc
Confidence 98 999998753
No 305
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=96.23 E-value=0.03 Score=53.30 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=53.3
Q ss_pred HHHHHHHHcCCCcceEEEecCCc----ccHHHHHHH-HHhCCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecC
Q 021156 97 EFANLYKEDGLTGGHAIMLGADP----LSKAAAIEA-LHAYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNN 167 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~~-v~~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~ 167 (316)
+.|+...++|++.+.+-=-+++. .....++.. .+.+++|++..|||.+ +++.+++..||+-|.+||.+...
T Consensus 120 ~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~t 196 (307)
T TIGR03151 120 ALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLCA 196 (307)
T ss_pred HHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhcc
Confidence 57788888999987664444331 123333343 4467899999999985 88999999999999999998765
No 306
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=96.22 E-value=0.11 Score=47.39 Aligned_cols=189 Identities=10% Similarity=0.008 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCc--ccHHHHHHHHHhCCCcEEEecCC-----CH-HHHHHHHHcCCCEEEeCCeee
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADP--LSKAAAIEALHAYPGGLQVGGGI-----NS-DNSLSYIEEGATHVIVTSYVF 165 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~--~~~~~i~~~v~~~~~pl~vGGGI-----r~-e~~~~~l~~Gad~VVigt~~~ 165 (316)
+..+..+...+.+....| +|+.-.- .--..+++.+++.+.++..+--+ +. .-++.+.++||+.+.+-.+
T Consensus 13 ~~~~~l~~~~~~~~~~~~-ikvg~~~f~~~G~~~i~~l~~~~~~i~~D~Kl~Di~~t~~~~i~~~~~~gad~itvH~~-- 89 (230)
T PRK00230 13 SKEEALAFLDQLDPAVLF-VKVGMELFTAGGPQFVRELKQRGFKVFLDLKLHDIPNTVAKAVRALAKLGVDMVNVHAS-- 89 (230)
T ss_pred CHHHHHHHHHhcCCcccE-EEEcHHHHHhcCHHHHHHHHhcCCCEEEEeehhhccccHHHHHHHHHHcCCCEEEEccc--
Confidence 344555555556655444 5654220 11123445555444456666554 43 3477889999999988653
Q ss_pred cCCCCCHHHHHHHHHHhc--CceEEEeeeeeecCCeeEEEeCCcceec-ccCHHHHHHHHHHcCCCEEEEeecCCccccC
Q 021156 166 NNGQMDLERLKDLVRVVG--KQRLVLDLSCRKKDGKYAIVTDRWQKFS-DVYLDERVLDFLASYADEFLVHGVDVEGKKL 242 (316)
Q Consensus 166 ~~~~~~~eli~ei~~~~G--~~~IvvslD~k~~~g~~~v~~~gw~~~~-~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~ 242 (316)
.. .+.++...+.-. ...-++.+++-.-.+.-.+. ..|.+.. .......++...+.|++.++...
T Consensus 90 ag----~~~i~~~~~~~~~~~~~~~~~V~~lts~~~~~l~-~~~~~~~~~~~v~~~a~~a~~~g~dgvv~~~-------- 156 (230)
T PRK00230 90 GG----PRMMKAAREALEPKSRPLLIAVTVLTSMDEEDLA-ELGINLSLEEQVLRLAKLAQEAGLDGVVCSA-------- 156 (230)
T ss_pred CC----HHHHHHHHHHhhccCCCeEEEEEECCCCCHHHHH-hCcCCCCHHHHHHHHHHHHHHcCCeEEEeCh--------
Confidence 32 666777665431 11234566543100000000 0011000 00122345566677777664321
Q ss_pred CCCHHHHHHHhhcCCCcEEEEeCCCCHH-----------HHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHH
Q 021156 243 GIDDELVALLGKYSPIPVTYAGGVTTMA-----------DLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAW 306 (316)
Q Consensus 243 G~d~eli~~l~~~~~iPVIasGGI~s~e-----------Di~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~ 306 (316)
.....++++. .+-.+++.+||+ ++ ....+.+.| +++++|||++ |+.+=+.+.+.++
T Consensus 157 -~~~~~ir~~~--~~~~~~v~pGI~-~~g~~~~dq~~~~~~~~ai~~G--ad~iVvGR~I--~~a~dP~~~a~~i 223 (230)
T PRK00230 157 -QEAAAIREAT--GPDFLLVTPGIR-PAGSDAGDQKRVMTPAQAIAAG--SDYIVVGRPI--TQAADPAAAYEAI 223 (230)
T ss_pred -HHHHHHHhhc--CCceEEEcCCcC-CCCCCcchHHHHhCHHHHHHcC--CCEEEECCcc--cCCCCHHHHHHHH
Confidence 1123344442 233567888887 33 577777777 8999999999 7655444444333
No 307
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.21 E-value=0.25 Score=46.62 Aligned_cols=152 Identities=18% Similarity=0.138 Sum_probs=96.7
Q ss_pred HHHhCCCcE--EEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeC
Q 021156 128 ALHAYPGGL--QVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTD 205 (316)
Q Consensus 128 ~v~~~~~pl--~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~ 205 (316)
..++..+|+ ..+=|-..+.+++++++|.+.|.++...+.- +=|.+..+++++... ..-+++-.- +-.-
T Consensus 69 ~a~~~~VPValHLDH~~~~e~i~~ai~~GftSVMiDgS~lp~-eeNi~~T~~vv~~Ah--~~gvsVEaE-------lG~i 138 (284)
T PRK12737 69 AARKYNIPLALHLDHHEDLDDIKKKVRAGIRSVMIDGSHLSF-EENIAIVKEVVEFCH--RYDASVEAE-------LGRL 138 (284)
T ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEEecCCCCCH-HHHHHHHHHHHHHHH--HcCCEEEEE-------Eeec
Confidence 334455554 4455556799999999999999997665532 002445555544321 111344321 1111
Q ss_pred Cccee---------cccCHHHHHHHHHHcCCCEEEEeecCCccccCC---CCHHHHHHHhhcCCCcEEEEeCCCCHH-HH
Q 021156 206 RWQKF---------SDVYLDERVLDFLASYADEFLVHGVDVEGKKLG---IDDELVALLGKYSPIPVTYAGGVTTMA-DL 272 (316)
Q Consensus 206 gw~~~---------~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G---~d~eli~~l~~~~~iPVIasGGI~s~e-Di 272 (316)
|..+. .--++.+..+...+.|++.+-+.-=+.-|.+.+ .|+++++++.+.+++|+..-||=+.++ ++
T Consensus 139 gg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~ 218 (284)
T PRK12737 139 GGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPLVLHGASGVPDEDV 218 (284)
T ss_pred cCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHH
Confidence 11111 012577777777789999775433244555544 499999999999999999988876654 56
Q ss_pred HHHHHhCCCcCEEEEccch
Q 021156 273 EKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 273 ~~l~~~G~g~~gVivG~Al 291 (316)
+++.+.| +..+=|++.+
T Consensus 219 ~kai~~G--i~KiNi~T~l 235 (284)
T PRK12737 219 KKAISLG--ICKVNVATEL 235 (284)
T ss_pred HHHHHCC--CeEEEeCcHH
Confidence 7788888 9999999987
No 308
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=96.19 E-value=0.011 Score=56.69 Aligned_cols=83 Identities=17% Similarity=0.032 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHcCCCcceEEE--ecC-----C-cc-cHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcC-CCEEEeCC
Q 021156 94 SAAEFANLYKEDGLTGGHAIM--LGA-----D-PL-SKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEG-ATHVIVTS 162 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvD--Lda-----~-~~-~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~G-ad~VVigt 162 (316)
+.+++++.+++.|++.+++.- ... . .. ......++.+.+++||..+|||+ .++++++++.| ||.|-+|.
T Consensus 242 e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR 321 (336)
T cd02932 242 DSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVALGR 321 (336)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeehhhH
Confidence 345788888888888776530 000 0 11 12233333345789999999998 59999999998 99999999
Q ss_pred eeecCCCCCHHHHHHHHH
Q 021156 163 YVFNNGQMDLERLKDLVR 180 (316)
Q Consensus 163 ~~~~~~~~~~eli~ei~~ 180 (316)
.++.| |+++.++.+
T Consensus 322 ~~i~d----P~~~~k~~~ 335 (336)
T cd02932 322 ELLRN----PYWPLHAAA 335 (336)
T ss_pred HHHhC----ccHHHHHhh
Confidence 99998 999887754
No 309
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=96.16 E-value=0.021 Score=50.94 Aligned_cols=34 Identities=38% Similarity=0.472 Sum_probs=31.1
Q ss_pred CcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156 134 GGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN 167 (316)
Q Consensus 134 ~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~ 167 (316)
.++.++|||+.+++.++.+.|+|.|++||+.+++
T Consensus 171 ~~i~v~GGI~~~nv~~l~~~GaD~vvvgSai~~~ 204 (220)
T PRK05581 171 ILIEVDGGINADNIKECAEAGADVFVAGSAVFGA 204 (220)
T ss_pred ceEEEECCCCHHHHHHHHHcCCCEEEEChhhhCC
Confidence 4578999999999999999999999999999975
No 310
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.14 E-value=0.065 Score=50.32 Aligned_cols=66 Identities=21% Similarity=0.235 Sum_probs=52.6
Q ss_pred HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhc
Q 021156 217 ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIF 294 (316)
Q Consensus 217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~ 294 (316)
+.++++.+.|++.+.+ + ....+.++++.+.. ++|+.++||| +.+.+.++.+.| ++++.+|+-. |
T Consensus 199 eea~~A~~~gaDyI~l---D------~~~~e~l~~~~~~~~~~i~i~AiGGI-t~~ni~~~a~~G--vd~IAvg~l~--~ 264 (277)
T PRK08072 199 EQVREAVAAGADIIMF---D------NRTPDEIREFVKLVPSAIVTEASGGI-TLENLPAYGGTG--VDYISLGFLT--H 264 (277)
T ss_pred HHHHHHHHcCCCEEEE---C------CCCHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHcC--CCEEEEChhh--c
Confidence 5677888999998876 1 14557778877654 4778899999 789999999998 9999999877 6
Q ss_pred cC
Q 021156 295 GG 296 (316)
Q Consensus 295 ~g 296 (316)
..
T Consensus 265 sa 266 (277)
T PRK08072 265 SV 266 (277)
T ss_pred CC
Confidence 43
No 311
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=96.13 E-value=0.031 Score=51.34 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=31.0
Q ss_pred CCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeec
Q 021156 133 PGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 133 ~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~ 166 (316)
..|+++||||+ .++++.+.++|||.+|+||+.++
T Consensus 185 ~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 185 NKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred CCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 47899999996 69999999999999999999875
No 312
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=96.13 E-value=0.12 Score=49.90 Aligned_cols=150 Identities=11% Similarity=0.032 Sum_probs=94.5
Q ss_pred CcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCC------CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEE-e--
Q 021156 134 GGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQ------MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIV-T-- 204 (316)
Q Consensus 134 ~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~------~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~-~-- 204 (316)
+-+-.+=|-..+.+.+.+++|.+.|.++...+.+.+ =|.+..+++++...+- -+++-.-. | .+. .
T Consensus 76 ValHLDHg~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~--GvsVEaEL--G--~igg~e~ 149 (347)
T TIGR01521 76 VVMHQDHGNSPATCQRAIQLGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAV--GASVEGEL--G--CLGSLET 149 (347)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHc--CCeEEEEe--e--ecccccc
Confidence 334556666679999999999999999766542100 0255555555443111 13333210 1 111 0
Q ss_pred ------CC--cce-----ecccCHHHHHHHHHHcCCCEEEEeecCCccccCC--------CCHHHHHHHhhcC-CCcEEE
Q 021156 205 ------DR--WQK-----FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLG--------IDDELVALLGKYS-PIPVTY 262 (316)
Q Consensus 205 ------~g--w~~-----~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G--------~d~eli~~l~~~~-~iPVIa 262 (316)
.+ ... ..--++.+..+...+.|++.+-+--=+.-|.+.+ .|++.++++.+.+ ++|+..
T Consensus 150 ~~~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~vPLVL 229 (347)
T TIGR01521 150 GMGEAEDGHGFEGVLDHSQLLTDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLPDTHLVM 229 (347)
T ss_pred cccccccCcccccccchhhcCCCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCCCCCEEE
Confidence 00 000 0012566666667778999764322233344433 6999999999988 799999
Q ss_pred EeCCCCH----------------------HHHHHHHHhCCCcCEEEEccch
Q 021156 263 AGGVTTM----------------------ADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 263 sGGI~s~----------------------eDi~~l~~~G~g~~gVivG~Al 291 (316)
-||=+.+ +++.++.+.| +..|=|++.+
T Consensus 230 HGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~G--I~KVNi~Tdl 278 (347)
T TIGR01521 230 HGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYG--VRKVNIDTDL 278 (347)
T ss_pred eCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCC--CeeEEeChHH
Confidence 9998765 8899999998 9999999877
No 313
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=96.13 E-value=0.2 Score=47.36 Aligned_cols=151 Identities=15% Similarity=0.166 Sum_probs=96.9
Q ss_pred HHhCCCcE--EEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHH---HhcCceEEEeeeeeecCCeeEEE
Q 021156 129 LHAYPGGL--QVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVR---VVGKQRLVLDLSCRKKDGKYAIV 203 (316)
Q Consensus 129 v~~~~~pl--~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~---~~G~~~IvvslD~k~~~g~~~v~ 203 (316)
.+...+|+ ..+=|-..+.+++++++|.+.|.++...+.- +=|....+++++ .+| +++-.-. | .+.
T Consensus 69 a~~~~vPValHLDH~~~~e~i~~ai~~GftSVM~DgS~l~~-eeNi~~T~~vv~~ah~~g-----v~VEaEl--G--~i~ 138 (287)
T PF01116_consen 69 AEEASVPVALHLDHGKDFEDIKRAIDAGFTSVMIDGSALPF-EENIAITREVVEYAHAYG-----VSVEAEL--G--HIG 138 (287)
T ss_dssp HHHSTSEEEEEEEEE-SHHHHHHHHHHTSSEEEEE-TTS-H-HHHHHHHHHHHHHHHHTT------EEEEEE--S--BSS
T ss_pred HHHcCCCEEeecccCCCHHHHHHHHHhCcccccccCCcCCH-HHHHHHHHHHHHhhhhhC-----CEEEEEe--e--eee
Confidence 34455665 5566666799999999999999996654431 002444444443 444 3333211 1 111
Q ss_pred e-CCccee------cccCHHHHHHHHHHcCCCEEEEeecCCccccCC-----CCHHHHHHHhhcC-CCcEEEEeCCCCHH
Q 021156 204 T-DRWQKF------SDVYLDERVLDFLASYADEFLVHGVDVEGKKLG-----IDDELVALLGKYS-PIPVTYAGGVTTMA 270 (316)
Q Consensus 204 ~-~gw~~~------~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G-----~d~eli~~l~~~~-~iPVIasGGI~s~e 270 (316)
. ...... .--++.+..+...+.|++.+-+.-=+.-|.+.+ .|+++++++.+.+ ++|+..-||=+.++
T Consensus 139 g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~ 218 (287)
T PF01116_consen 139 GKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLVLHGGSGLPD 218 (287)
T ss_dssp SSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEEESSCTTS-H
T ss_pred ccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcCCCCEEEECCCCCCH
Confidence 0 011000 112677777777899999876544466677766 4899999999998 99999999988776
Q ss_pred -HHHHHHHhCCCcCEEEEccch
Q 021156 271 -DLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 271 -Di~~l~~~G~g~~gVivG~Al 291 (316)
++.++.+.| +..+=+++.+
T Consensus 219 e~~~~ai~~G--i~KiNi~T~~ 238 (287)
T PF01116_consen 219 EQIRKAIKNG--ISKINIGTEL 238 (287)
T ss_dssp HHHHHHHHTT--EEEEEESHHH
T ss_pred HHHHHHHHcC--ceEEEEehHH
Confidence 788999988 9999999988
No 314
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=96.12 E-value=0.018 Score=52.30 Aligned_cols=187 Identities=20% Similarity=0.120 Sum_probs=100.6
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCC------------cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEe
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGAD------------PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIV 160 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~------------~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVi 160 (316)
+| |.|+.-+++|+- -+.-|+.- ..+...+.++..++.+|+..=--|- .-+++-+-..|+|.+=
T Consensus 29 n~-EQA~IAE~aGAv--AVMaLervPaDiR~aGGVaRMaDp~~i~eim~aVsIPVMAKvRIGH~~EA~iLealgVD~ID- 104 (296)
T COG0214 29 NA-EQARIAEEAGAV--AVMALERVPADIRAAGGVARMADPKMIEEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMID- 104 (296)
T ss_pred CH-HHHHHHHhcCce--eEeehhhCcHHHHhccCccccCCHHHHHHHHHhcccceeeeeecchhHHHHHHHHhCCCccc-
Confidence 45 488888888855 34444421 1345556666678999999888885 6667777778999752
Q ss_pred CCeeecCCCCCHHHHHHHH-HHhcCceEEEeeeeee--------cCCeeEEEeCCcceecccCHHHHHHHHHHcC--CCE
Q 021156 161 TSYVFNNGQMDLERLKDLV-RVVGKQRLVLDLSCRK--------KDGKYAIVTDRWQKFSDVYLDERVLDFLASY--ADE 229 (316)
Q Consensus 161 gt~~~~~~~~~~eli~ei~-~~~G~~~IvvslD~k~--------~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~G--a~~ 229 (316)
-|+.+.- .+..-.+- +.|- +-+-+-+|. .+|--.++++|-- .++ +..+..+.+.... ++.
T Consensus 105 ESEVLTP----AD~~~Hi~K~~Ft---VPFVcGarnLgEAlRRI~EGAaMIRTKGEa-GTG-nv~eAVrHmr~i~~eI~~ 175 (296)
T COG0214 105 ESEVLTP----ADEEFHINKWKFT---VPFVCGARNLGEALRRISEGAAMIRTKGEA-GTG-NVVEAVRHMRKINGEIRR 175 (296)
T ss_pred cccccCC----Cchhhhcchhhcc---cceecCcCcHHHHHHHHhhhHHHHhcCCCC-CCC-cHHHHHHHHHHHHHHHHH
Confidence 1222220 00000000 1110 000000010 0111123333321 122 3334333322211 111
Q ss_pred EEEeecCCcc-----ccCCCCHHHHHHHhhcCCCcE--EEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156 230 FLVHGVDVEG-----KKLGIDDELVALLGKYSPIPV--TYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN 297 (316)
Q Consensus 230 ilvtdi~~dG-----~~~G~d~eli~~l~~~~~iPV--IasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~ 297 (316)
+...+.|- ..-+..+++++.+++.-..|| +++|||.|+.|..-+..+| ++||.|||.+|--++|
T Consensus 176 --l~~~~edel~~~Ak~~~~p~elv~~~~~~grLPVvnFAAGGvATPADAALMM~LG--adGVFVGSGIFKS~~P 246 (296)
T COG0214 176 --LQSMTEDELYVVAKELQAPYELVKEVAKLGRLPVVNFAAGGVATPADAALMMQLG--ADGVFVGSGIFKSSNP 246 (296)
T ss_pred --HHccCHHHHHHHHHHhCChHHHHHHHHHhCCCCeEeecccCcCChhHHHHHHHhC--CCeEEecccccCCCCH
Confidence 12222221 113457789999988767776 7999999999999999999 9999999999444443
No 315
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=96.11 E-value=0.022 Score=56.38 Aligned_cols=86 Identities=19% Similarity=0.196 Sum_probs=61.1
Q ss_pred cCHHHHHHHHHHcCCCcceE---------EEecC---------C--------ccc---HHHHHHHH-HhC---CCcEEEe
Q 021156 93 KSAAEFANLYKEDGLTGGHA---------IMLGA---------D--------PLS---KAAAIEAL-HAY---PGGLQVG 139 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~l---------vDLda---------~--------~~~---~~~i~~~v-~~~---~~pl~vG 139 (316)
.+..++|+...++|++++-+ +|++. . +.. ....+..+ +.+ ++||+--
T Consensus 180 ~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~ 259 (420)
T PRK08318 180 TDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGI 259 (420)
T ss_pred ccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEee
Confidence 46778999999999999885 55431 0 111 12233333 344 6899999
Q ss_pred cCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHH
Q 021156 140 GGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRV 181 (316)
Q Consensus 140 GGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~ 181 (316)
|||. .+|+.+++.+||+-|-|+|+++.+| |+.+.++.+.
T Consensus 260 GGI~s~~da~e~i~aGA~~Vqi~ta~~~~g---p~ii~~I~~~ 299 (420)
T PRK08318 260 GGIETWRDAAEFILLGAGTVQVCTAAMQYG---FRIVEDMISG 299 (420)
T ss_pred cCcCCHHHHHHHHHhCCChheeeeeeccCC---chhHHHHHHH
Confidence 9998 4999999999999999999998852 6555555543
No 316
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=96.09 E-value=0.019 Score=55.69 Aligned_cols=71 Identities=20% Similarity=0.164 Sum_probs=52.2
Q ss_pred HHHHHHHHcCCCcceEEEe-----cCCcccHHHHHHHHHhC--CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecC
Q 021156 97 EFANLYKEDGLTGGHAIML-----GADPLSKAAAIEALHAY--PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNN 167 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvDL-----da~~~~~~~i~~~v~~~--~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~ 167 (316)
+.|+...+.|++++.+.+= |+.+.....+.++.+.+ .+||++.||||. .|+.+++..||+-|-+|+.++..
T Consensus 233 ~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~ 311 (351)
T cd04737 233 EDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYG 311 (351)
T ss_pred HHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHH
Confidence 5778888899998777532 22222233344444444 599999999995 99999999999999999987763
No 317
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=96.09 E-value=0.11 Score=47.13 Aligned_cols=128 Identities=18% Similarity=0.144 Sum_probs=74.4
Q ss_pred HHHHHHHHcCCCE--EEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156 145 DNSLSYIEEGATH--VIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF 222 (316)
Q Consensus 145 e~~~~~l~~Gad~--VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~ 222 (316)
.+++.+++.||+- +|++-..++.|.+ ....+++.+.. +.. ..+-+| .+.-.+-... -.....++.+
T Consensus 78 ~e~~~Ai~~GA~EiD~Vin~~~~~~g~~-~~v~~ei~~v~--~~~-~~~~lK------vIlEt~~L~~--e~i~~a~~~~ 145 (221)
T PRK00507 78 FEAKDAIANGADEIDMVINIGALKSGDW-DAVEADIRAVV--EAA-GGAVLK------VIIETCLLTD--EEKVKACEIA 145 (221)
T ss_pred HHHHHHHHcCCceEeeeccHHHhcCCCH-HHHHHHHHHHH--Hhc-CCceEE------EEeecCcCCH--HHHHHHHHHH
Confidence 6688889999985 5666555554332 22223332211 100 111122 1111221111 1346677788
Q ss_pred HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
.+.|++ ++-|+-.-. ..|...+.++.+++.. .++|.++|||++.+|+.+++++| + -.||++-
T Consensus 146 ~~agad-fIKTsTG~~--~~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aG--A--~riGtS~ 209 (221)
T PRK00507 146 KEAGAD-FVKTSTGFS--TGGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAG--A--TRLGTSA 209 (221)
T ss_pred HHhCCC-EEEcCCCCC--CCCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcC--c--ceEccCc
Confidence 899999 444443221 2455777777776654 48999999999999999999998 5 3455443
No 318
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=96.08 E-value=0.065 Score=50.04 Aligned_cols=66 Identities=17% Similarity=0.246 Sum_probs=52.8
Q ss_pred HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhc
Q 021156 217 ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIF 294 (316)
Q Consensus 217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~ 294 (316)
+.++++.+.|++.+.+-.+ ..+.++++.+.. ++|+.++||| +.+.+.++.+.| ++++.+|+.. |
T Consensus 193 eea~~A~~~gaDyI~ld~~---------~~e~l~~~~~~~~~~ipi~AiGGI-~~~ni~~~a~~G--vd~Iav~sl~--~ 258 (268)
T cd01572 193 EQLKEALEAGADIIMLDNM---------SPEELREAVALLKGRVLLEASGGI-TLENIRAYAETG--VDYISVGALT--H 258 (268)
T ss_pred HHHHHHHHcCCCEEEECCc---------CHHHHHHHHHHcCCCCcEEEECCC-CHHHHHHHHHcC--CCEEEEEeee--c
Confidence 6677888999998876332 357777776654 5899999999 589999999998 9999999988 6
Q ss_pred cC
Q 021156 295 GG 296 (316)
Q Consensus 295 ~g 296 (316)
..
T Consensus 259 ~a 260 (268)
T cd01572 259 SA 260 (268)
T ss_pred CC
Confidence 43
No 319
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=96.07 E-value=0.036 Score=52.88 Aligned_cols=76 Identities=13% Similarity=0.218 Sum_probs=51.2
Q ss_pred ecCCccCHHHHHHHHHHcCCCcceEEEec---CC--cccHHHHHH-HHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEe
Q 021156 88 NFESDKSAAEFANLYKEDGLTGGHAIMLG---AD--PLSKAAAIE-ALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIV 160 (316)
Q Consensus 88 ~~~~~~~p~e~a~~~~~~G~~~l~lvDLd---a~--~~~~~~i~~-~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVi 160 (316)
+|+ .+||. .|+.+++.|+ .-+--|- +. ...++..++ .+...++|+.+|+||. .+|+..+++.|||-|.+
T Consensus 202 ~yc-~~d~~-~a~~l~~~g~--~avmPl~~pIGsg~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~ 277 (326)
T PRK11840 202 VYC-SDDPI-AAKRLEDAGA--VAVMPLGAPIGSGLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLM 277 (326)
T ss_pred EEe-CCCHH-HHHHHHhcCC--EEEeeccccccCCCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 444 24665 6666776665 1122222 11 122444444 4456789999999997 59999999999999999
Q ss_pred CCeeecC
Q 021156 161 TSYVFNN 167 (316)
Q Consensus 161 gt~~~~~ 167 (316)
+|+..+.
T Consensus 278 nSaIa~a 284 (326)
T PRK11840 278 NTAIAEA 284 (326)
T ss_pred cceeccC
Confidence 9998754
No 320
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.04 E-value=0.024 Score=53.55 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=40.9
Q ss_pred CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeec-CCCCCHHHHHHHHHHh
Q 021156 133 PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFN-NGQMDLERLKDLVRVV 182 (316)
Q Consensus 133 ~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~-~~~~~~eli~ei~~~~ 182 (316)
.+||+.-|||.+ +|+.+++.+||+-|-++|.++. + |..+.++.+.+
T Consensus 243 ~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~~g----p~~~~~i~~~L 290 (294)
T cd04741 243 EIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEG----PKVFARIEKEL 290 (294)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhhcC----chHHHHHHHHH
Confidence 499999999985 9999999999999999999985 5 99999887765
No 321
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=96.01 E-value=0.12 Score=49.88 Aligned_cols=150 Identities=11% Similarity=0.084 Sum_probs=94.1
Q ss_pred CcE--EEecCCCHHHHHHHHHcCCCEEEeCCeeecCCC----C--CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEE-e
Q 021156 134 GGL--QVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQ----M--DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIV-T 204 (316)
Q Consensus 134 ~pl--~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~----~--~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~-~ 204 (316)
+|+ -.+=|-..+.+++.+++|.+.|.++...+.||+ + |.+..+++++... ..-+++-.-. | .+. .
T Consensus 76 VPVaLHLDHg~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah--~~GvsVEaEL--G--~igg~ 149 (347)
T PRK13399 76 IPICLHQDHGNSPATCQSAIRSGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAH--AVGVSVEGEL--G--CLGSL 149 (347)
T ss_pred CcEEEECCCCCCHHHHHHHHhcCCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHH--HcCCeEEEEe--e--eccCc
Confidence 554 455565679999999999999999776443211 0 2666666665421 1113443311 1 111 0
Q ss_pred --------CCcc-------eecccCHHHHHHHHHHcCCCEEEEeecCCccccCC--------CCHHHHHHHhhcC-CCcE
Q 021156 205 --------DRWQ-------KFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLG--------IDDELVALLGKYS-PIPV 260 (316)
Q Consensus 205 --------~gw~-------~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G--------~d~eli~~l~~~~-~iPV 260 (316)
.+.. +..--++.+..+...+.|++.+-+--=+.-|.+.+ .|++.++++.+.+ ++|+
T Consensus 150 e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPL 229 (347)
T PRK13399 150 ETGEAGEEDGVGAEGKLSHDQMLTDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHL 229 (347)
T ss_pred ccccccccCCccccccccccccCCCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCE
Confidence 0100 00012566666666678999763211123344432 6899999999888 7999
Q ss_pred EEEeCCCCH----------------------HHHHHHHHhCCCcCEEEEccch
Q 021156 261 TYAGGVTTM----------------------ADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 261 IasGGI~s~----------------------eDi~~l~~~G~g~~gVivG~Al 291 (316)
..-||=+.+ |+++++.+.| +..|=|++-+
T Consensus 230 VLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~G--I~KINi~Tdl 280 (347)
T PRK13399 230 VMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHG--VRKVNIDTDI 280 (347)
T ss_pred EEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCC--CeEEEeChHH
Confidence 999998765 7889999998 9999999866
No 322
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.99 E-value=0.078 Score=50.07 Aligned_cols=68 Identities=13% Similarity=0.198 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhh-----cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccc
Q 021156 216 DERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGK-----YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA 290 (316)
Q Consensus 216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~-----~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~A 290 (316)
.+.+.++.+.|++.|.+- ..+.+.++++.+ ..++|+.++||| +.+.+.++.+.| ++.+.+|+.
T Consensus 206 leea~eA~~~GaD~I~LD---------n~~~e~l~~av~~~~~~~~~i~leAsGGI-t~~ni~~ya~tG--vD~Isvgsl 273 (288)
T PRK07428 206 LEQVQEALEYGADIIMLD---------NMPVDLMQQAVQLIRQQNPRVKIEASGNI-TLETIRAVAETG--VDYISSSAP 273 (288)
T ss_pred HHHHHHHHHcCCCEEEEC---------CCCHHHHHHHHHHHHhcCCCeEEEEECCC-CHHHHHHHHHcC--CCEEEEchh
Confidence 467778889999987643 223344444433 357899999999 689999999998 999999999
Q ss_pred hhhccCc
Q 021156 291 LDIFGGN 297 (316)
Q Consensus 291 l~~~~g~ 297 (316)
+ |.-+
T Consensus 274 ~--~sa~ 278 (288)
T PRK07428 274 I--TRSP 278 (288)
T ss_pred h--hCCC
Confidence 8 7443
No 323
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=95.99 E-value=0.042 Score=54.56 Aligned_cols=75 Identities=16% Similarity=0.112 Sum_probs=53.8
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCC--c-c-cHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGAD--P-L-SKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN 167 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~--~-~-~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~ 167 (316)
.++.+.++.+.+.|++.+.+----.. . . ....+.+.....++|+.+.|||+.+.+..++++||+.+++||..++.
T Consensus 118 ~t~~e~~~~a~~~GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~~~iPI~a~GGI~~~n~~~~l~aGAdgv~vGsaI~~~ 196 (430)
T PRK07028 118 PDPVKRAVELEELGVDYINVHVGIDQQMLGKDPLELLKEVSEEVSIPIAVAGGLDAETAAKAVAAGADIVIVGGNIIKS 196 (430)
T ss_pred CCHHHHHHHHHhcCCCEEEEEeccchhhcCCChHHHHHHHHhhCCCcEEEECCCCHHHHHHHHHcCCCEEEEChHHcCC
Confidence 35677788888888887744321110 1 1 12334343345679999999999999999999999999999998865
No 324
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.96 E-value=0.081 Score=49.68 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhh
Q 021156 216 DERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDI 293 (316)
Q Consensus 216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~ 293 (316)
.+.+.++.+.|++.|.+ | .+..+.++++.+.. ++|+.++||| +.+.+.++.+.| ++++.+|+..
T Consensus 199 leea~eA~~~gaD~I~L-D--------~~~~e~l~~~v~~~~~~i~leAsGGI-t~~ni~~~a~tG--vD~Isvg~lt-- 264 (277)
T PRK05742 199 LDELRQALAAGADIVML-D--------ELSLDDMREAVRLTAGRAKLEASGGI-NESTLRVIAETG--VDYISIGAMT-- 264 (277)
T ss_pred HHHHHHHHHcCCCEEEE-C--------CCCHHHHHHHHHHhCCCCcEEEECCC-CHHHHHHHHHcC--CCEEEEChhh--
Confidence 46678888999998754 2 23556677666544 7899999999 589999999998 9999999877
Q ss_pred ccCc
Q 021156 294 FGGN 297 (316)
Q Consensus 294 ~~g~ 297 (316)
|.-+
T Consensus 265 ~s~~ 268 (277)
T PRK05742 265 KDVK 268 (277)
T ss_pred cCCc
Confidence 6543
No 325
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=95.96 E-value=0.038 Score=54.38 Aligned_cols=75 Identities=23% Similarity=0.252 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHcCCCEEEEeecCCcccc---------CCCC-HHHHHHHhhc-------CCCcEEEEeCCCCHHHHHHHH
Q 021156 214 YLDERVLDFLASYADEFLVHGVDVEGKK---------LGID-DELVALLGKY-------SPIPVTYAGGVTTMADLEKIK 276 (316)
Q Consensus 214 ~~~e~a~~~~~~Ga~~ilvtdi~~dG~~---------~G~d-~eli~~l~~~-------~~iPVIasGGI~s~eDi~~l~ 276 (316)
+..+.++.+...|++.|.+-.-.- |+. .|.. ...+.++.+. .++|||++|||++..|+.+++
T Consensus 226 ~~~~~a~~~~~~g~D~I~VsG~~G-gtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kal 304 (392)
T cd02808 226 GEGDIAAGVAAAGADFITIDGAEG-GTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKAL 304 (392)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCC-CCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHH
Confidence 355777777777799887544321 221 1332 2344444332 269999999999999999999
Q ss_pred HhCCCcCEEEEccch
Q 021156 277 VAGIGRVDVTVGSAL 291 (316)
Q Consensus 277 ~~G~g~~gVivG~Al 291 (316)
.+| +++|-+|+++
T Consensus 305 aLG--Ad~V~ig~~~ 317 (392)
T cd02808 305 ALG--ADAVGIGTAA 317 (392)
T ss_pred HcC--CCeeeechHH
Confidence 999 9999999998
No 326
>PLN02535 glycolate oxidase
Probab=95.94 E-value=0.023 Score=55.28 Aligned_cols=73 Identities=22% Similarity=0.207 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHcCCCcceEEEecC-----CcccHHHHHHHHHhC--CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeee
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGA-----DPLSKAAAIEALHAY--PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVF 165 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda-----~~~~~~~i~~~v~~~--~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~ 165 (316)
+|. -|+...+.|++.+.+..-.+ .......+.++.+++ .+||++.||||. .|+.+++..||+.|.+|+.++
T Consensus 233 ~~~-dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l 311 (364)
T PLN02535 233 TRE-DAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVI 311 (364)
T ss_pred CHH-HHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 454 47778888999775543222 111233344444443 599999999995 999999999999999999987
Q ss_pred cC
Q 021156 166 NN 167 (316)
Q Consensus 166 ~~ 167 (316)
..
T Consensus 312 ~~ 313 (364)
T PLN02535 312 YG 313 (364)
T ss_pred hh
Confidence 64
No 327
>PRK06852 aldolase; Validated
Probab=95.93 E-value=0.14 Score=48.71 Aligned_cols=77 Identities=14% Similarity=-0.046 Sum_probs=50.5
Q ss_pred HHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC-CCcEEEEeCCCC-HHHH----HHHHH-hCCCcCEEEEc
Q 021156 216 DERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS-PIPVTYAGGVTT-MADL----EKIKV-AGIGRVDVTVG 288 (316)
Q Consensus 216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~-~iPVIasGGI~s-~eDi----~~l~~-~G~g~~gVivG 288 (316)
.-.++...++|++.+= +.-..+ ..+-|.+.++++.+.+ ++||+++||=+. .+++ +.+++ .| +.|+++|
T Consensus 191 a~aaRiaaELGADIVK-v~y~~~--~~~g~~e~f~~vv~~~g~vpVviaGG~k~~~~e~L~~v~~ai~~aG--a~Gv~~G 265 (304)
T PRK06852 191 AGAAGVAACLGADFVK-VNYPKK--EGANPAELFKEAVLAAGRTKVVCAGGSSTDPEEFLKQLYEQIHISG--ASGNATG 265 (304)
T ss_pred HHHHHHHHHHcCCEEE-ecCCCc--CCCCCHHHHHHHHHhCCCCcEEEeCCCCCCHHHHHHHHHHHHHHcC--Cceeeec
Confidence 3446888899999653 222211 1124678888888877 899999999884 3333 33334 44 8999999
Q ss_pred cchhhccCc
Q 021156 289 SALDIFGGN 297 (316)
Q Consensus 289 ~Al~~~~g~ 297 (316)
|-+|-+.++
T Consensus 266 RNIfQ~~~p 274 (304)
T PRK06852 266 RNIHQKPLD 274 (304)
T ss_pred hhhhcCCCc
Confidence 999444433
No 328
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=95.92 E-value=0.0076 Score=58.05 Aligned_cols=85 Identities=20% Similarity=0.172 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHcCCCcceEEEec---------------CC---cccHHH---HHHHHH-hC--CCcEEEecCCC-HHHHH
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLG---------------AD---PLSKAA---AIEALH-AY--PGGLQVGGGIN-SDNSL 148 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLd---------------a~---~~~~~~---i~~~v~-~~--~~pl~vGGGIr-~e~~~ 148 (316)
++.++|+...+.|++++.+++-- ++ ....+. .+..++ .+ .+||+.-|||. .+|+.
T Consensus 225 ~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~ 304 (335)
T TIGR01036 225 DLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDAL 304 (335)
T ss_pred HHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHH
Confidence 68889999999999999987621 00 011122 223332 34 58999999998 59999
Q ss_pred HHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHH
Q 021156 149 SYIEEGATHVIVTSYVFNNGQMDLERLKDLVRV 181 (316)
Q Consensus 149 ~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~ 181 (316)
+++.+||+.|-++|+++.+ .|.++.++.+.
T Consensus 305 e~l~aGA~~Vqv~ta~~~~---Gp~~~~~i~~~ 334 (335)
T TIGR01036 305 EKIRAGASLLQIYSGFIYW---GPPLVKEIVKE 334 (335)
T ss_pred HHHHcCCcHHHhhHHHHHh---CchHHHHHHhh
Confidence 9999999999999999774 28888888653
No 329
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=95.91 E-value=0.088 Score=50.90 Aligned_cols=151 Identities=17% Similarity=0.070 Sum_probs=101.6
Q ss_pred CcEEEecCCC-H----HHHHHHHHcCCC--EEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCC
Q 021156 134 GGLQVGGGIN-S----DNSLSYIEEGAT--HVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDR 206 (316)
Q Consensus 134 ~pl~vGGGIr-~----e~~~~~l~~Gad--~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~g 206 (316)
+|+..-+|+. . +.++++.+.|.. |+-+|....+. +.+.++.+.+.+|+ .+.+.+|.. .+
T Consensus 131 v~~y~s~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~---d~~~v~air~~~g~-~~~l~vDaN----------~~ 196 (355)
T cd03321 131 VQAYDSHGLDGAKLATERAVTAAEEGFHAVKTKIGYPTADE---DLAVVRSIRQAVGD-GVGLMVDYN----------QS 196 (355)
T ss_pred eeEEEeCCCChHHHHHHHHHHHHHhhhHHHhhhcCCCChHh---HHHHHHHHHHhhCC-CCEEEEeCC----------CC
Confidence 4554444553 2 456677778865 44456432221 38899999999985 567788973 35
Q ss_pred cceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEE
Q 021156 207 WQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVT 286 (316)
Q Consensus 207 w~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVi 286 (316)
|... +..++++.+.+.++..+ -. -..-.|++.++++++.+++||.+.-.+.+..++.++.+.+ .++.+.
T Consensus 197 ~~~~---~A~~~~~~l~~~~i~~i--Ee-----P~~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~-~~d~i~ 265 (355)
T cd03321 197 LTVP---EAIERGQALDQEGLTWI--EE-----PTLQHDYEGHARIASALRTPVQMGENWLGPEEMFKALSAG-ACDLVM 265 (355)
T ss_pred cCHH---HHHHHHHHHHcCCCCEE--EC-----CCCCcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhC-CCCeEe
Confidence 6532 36677888888776533 11 1122488999999999999998888889999999999987 366666
Q ss_pred EccchhhccCcccHHHHHHHHHhhc
Q 021156 287 VGSALDIFGGNLAYKDVVAWHAQQE 311 (316)
Q Consensus 287 vG~Al~~~~g~~~~~~~~~~~~~~~ 311 (316)
+--.. .+|-....++.++++++.
T Consensus 266 ~~~~~--~GGit~~~~ia~~A~~~g 288 (355)
T cd03321 266 PDLMK--IGGVTGWLRASALAEQAG 288 (355)
T ss_pred cCHhh--hCCHHHHHHHHHHHHHcC
Confidence 66555 666556666666666543
No 330
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=95.91 E-value=0.16 Score=45.33 Aligned_cols=134 Identities=13% Similarity=0.086 Sum_probs=75.8
Q ss_pred HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcC
Q 021156 147 SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASY 226 (316)
Q Consensus 147 ~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~G 226 (316)
++.++++|||.|.+-.+.-.+ .++.+-+..+++| -++.+.++... .+..+.....+...+....+.|
T Consensus 73 ~~~~~~~gad~vtvh~e~g~~---~l~~~i~~~~~~g-~~~~v~~~~~~---------~~~~~~~~~~~~~v~~m~~e~G 139 (215)
T PRK13813 73 CEAVFEAGAWGIIVHGFTGRD---SLKAVVEAAAESG-GKVFVVVEMSH---------PGALEFIQPHADKLAKLAQEAG 139 (215)
T ss_pred HHHHHhCCCCEEEEcCcCCHH---HHHHHHHHHHhcC-CeEEEEEeCCC---------CCCCCCHHHHHHHHHHHHHHhC
Confidence 578889999999998875321 1333334445565 34444444320 0111111112334455566678
Q ss_pred CCEEEEeecCCccccCCCCHHHHHHHhhcCCCc-EEEEeCCCCH-HHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156 227 ADEFLVHGVDVEGKKLGIDDELVALLGKYSPIP-VTYAGGVTTM-ADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV 304 (316)
Q Consensus 227 a~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iP-VIasGGI~s~-eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~ 304 (316)
++...+. ....+.++++++..+-+ .++.|||+.. .++..+.+.| ++.+++||++ |..+ ++++..
T Consensus 140 ~~g~~~~---------~~~~~~i~~l~~~~~~~~~ivdgGI~~~g~~~~~~~~aG--ad~iV~Gr~I--~~~~-d~~~~~ 205 (215)
T PRK13813 140 AFGVVAP---------ATRPERVRYIRSRLGDELKIISPGIGAQGGKAADAIKAG--ADYVIVGRSI--YNAA-DPREAA 205 (215)
T ss_pred CCeEEEC---------CCcchhHHHHHHhcCCCcEEEeCCcCCCCCCHHHHHHcC--CCEEEECccc--CCCC-CHHHHH
Confidence 7654321 11235556665544333 3488999875 2588888888 8999999999 7543 345544
Q ss_pred HHH
Q 021156 305 AWH 307 (316)
Q Consensus 305 ~~~ 307 (316)
+..
T Consensus 206 ~~l 208 (215)
T PRK13813 206 KAI 208 (215)
T ss_pred HHH
Confidence 433
No 331
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=95.90 E-value=0.034 Score=48.12 Aligned_cols=73 Identities=23% Similarity=0.089 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHcCCCcceEEEec-C-------CcccHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeee
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLG-A-------DPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVF 165 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLd-a-------~~~~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~ 165 (316)
++.+ ++.+.+.|++.+.+--.. + .......+.+..+..++|+.+.|||+.+++..+.++|++.+++|+..+
T Consensus 104 t~~~-~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g~~i~ 182 (196)
T cd00564 104 SLEE-ALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGITPENAAEVLAAGADGVAVISAIT 182 (196)
T ss_pred CHHH-HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEEehHhh
Confidence 4544 455666787765442111 1 112233444444447799999999998999999999999999999988
Q ss_pred cC
Q 021156 166 NN 167 (316)
Q Consensus 166 ~~ 167 (316)
.+
T Consensus 183 ~~ 184 (196)
T cd00564 183 GA 184 (196)
T ss_pred cC
Confidence 65
No 332
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=95.89 E-value=0.055 Score=47.89 Aligned_cols=73 Identities=22% Similarity=0.115 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHcCCCcceE--EEecCCcc------cHHHHHHHHHhCC-CcEEEecCCCHHHHHHHHHcCCCEEEeCCee
Q 021156 94 SAAEFANLYKEDGLTGGHA--IMLGADPL------SKAAAIEALHAYP-GGLQVGGGINSDNSLSYIEEGATHVIVTSYV 164 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~l--vDLda~~~------~~~~i~~~v~~~~-~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~ 164 (316)
++.++.+ ..+.|++.+.+ +.=...++ ..+.+.+..+..+ +|+.+.|||+.+++..++++||+.+++|+..
T Consensus 113 t~~e~~~-a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~Ga~gv~~gs~i 191 (212)
T PRK00043 113 TLEEAAA-ALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGITPENAPEVLEAGADGVAVVSAI 191 (212)
T ss_pred CHHHHHH-HhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEeHHh
Confidence 5666544 33567776543 11111111 1344444444555 9999999999899999999999999999998
Q ss_pred ecC
Q 021156 165 FNN 167 (316)
Q Consensus 165 ~~~ 167 (316)
+++
T Consensus 192 ~~~ 194 (212)
T PRK00043 192 TGA 194 (212)
T ss_pred hcC
Confidence 764
No 333
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=95.89 E-value=0.017 Score=55.85 Aligned_cols=93 Identities=13% Similarity=0.037 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHcC-CCcceEEE-----------ecCC----cccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcC-
Q 021156 94 SAAEFANLYKEDG-LTGGHAIM-----------LGAD----PLSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEG- 154 (316)
Q Consensus 94 ~p~e~a~~~~~~G-~~~l~lvD-----------Lda~----~~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~G- 154 (316)
+.+++++.++++| ++.+|+-- .-.. +.......+.++ .+++|+++.|||+ .++++++++.|
T Consensus 229 e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~ 308 (343)
T cd04734 229 EALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGH 308 (343)
T ss_pred HHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCC
Confidence 5678899999998 78777621 0000 011223334444 5789999999998 59999999875
Q ss_pred CCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEee
Q 021156 155 ATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDL 191 (316)
Q Consensus 155 ad~VVigt~~~~~~~~~~eli~ei~~~~G~~~Ivvsl 191 (316)
||.|.+|-.++.| |+++.++.+.- .+.|..++
T Consensus 309 ~D~V~~gR~~lad----P~l~~k~~~g~-~~~i~~C~ 340 (343)
T cd04734 309 ADMVGMTRAHIAD----PHLVAKAREGR-EDDIRPCI 340 (343)
T ss_pred CCeeeecHHhHhC----ccHHHHHHcCC-ccCcCcCc
Confidence 9999999999998 99999997643 13444443
No 334
>PLN02411 12-oxophytodienoate reductase
Probab=95.84 E-value=0.065 Score=52.73 Aligned_cols=53 Identities=15% Similarity=0.040 Sum_probs=43.8
Q ss_pred HHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHH
Q 021156 247 ELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDV 303 (316)
Q Consensus 247 eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~ 303 (316)
.+.+.+++.+++||+++|++ +.++..++++.| .+|-|.+||++ ..+|-..+.+
T Consensus 303 ~~a~~ik~~v~~pvi~~G~i-~~~~a~~~l~~g-~aDlV~~gR~~--iadPdl~~k~ 355 (391)
T PLN02411 303 QLMRTLRRAYQGTFMCSGGF-TRELGMQAVQQG-DADLVSYGRLF--ISNPDLVLRF 355 (391)
T ss_pred HHHHHHHHHcCCCEEEECCC-CHHHHHHHHHcC-CCCEEEECHHH--HhCccHHHHH
Confidence 45677888889999999999 569999999988 48999999999 8887544444
No 335
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=95.82 E-value=0.12 Score=48.32 Aligned_cols=63 Identities=17% Similarity=0.236 Sum_probs=48.4
Q ss_pred HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 217 ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
+.++++.+.|++.+.+-. +..+.++++.+.. .+|+.++||| +.+.+.++.+.| ++++.+|...
T Consensus 189 eea~~A~~~gaDyI~ld~---------~~~e~lk~~v~~~~~~ipi~AsGGI-~~~ni~~~a~~G--vd~Isvgait 253 (265)
T TIGR00078 189 EEAEEAAEAGADIIMLDN---------MKPEEIKEAVQLLKGRVLLEASGGI-TLDNLEEYAETG--VDVISSGALT 253 (265)
T ss_pred HHHHHHHHcCCCEEEECC---------CCHHHHHHHHHHhcCCCcEEEECCC-CHHHHHHHHHcC--CCEEEeCHHH
Confidence 668888899999876522 2335666665543 3899999999 589999999998 9999995544
No 336
>PRK04302 triosephosphate isomerase; Provisional
Probab=95.79 E-value=0.015 Score=52.51 Aligned_cols=43 Identities=28% Similarity=0.367 Sum_probs=35.8
Q ss_pred HHHHHHh--CCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecC
Q 021156 125 AIEALHA--YPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNN 167 (316)
Q Consensus 125 i~~~v~~--~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~ 167 (316)
+.+.+++ .++|+.+||||+ .++++.+++.|+|-|++||+..+.
T Consensus 163 ~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~ 208 (223)
T PRK04302 163 AVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKA 208 (223)
T ss_pred HHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCC
Confidence 3444554 268999999998 599999999999999999999874
No 337
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=95.75 E-value=0.22 Score=46.97 Aligned_cols=178 Identities=16% Similarity=0.107 Sum_probs=101.9
Q ss_pred CHHHHHHHHHHcCCCcceEEEec-----C----CcccHHHH----HHHHHhCCCcEEEec-----CC-CH-HHHHHHHHc
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLG-----A----DPLSKAAA----IEALHAYPGGLQVGG-----GI-NS-DNSLSYIEE 153 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLd-----a----~~~~~~~i----~~~v~~~~~pl~vGG-----GI-r~-e~~~~~l~~ 153 (316)
|+. -|+..+++|++.+++-=.. + +.....++ .++.+.+++||++++ +. +. ..++++.++
T Consensus 22 Da~-SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~a 100 (285)
T TIGR02317 22 NAM-AALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDA 100 (285)
T ss_pred CHH-HHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHc
Confidence 666 6677777787755443211 0 01123333 333445789999862 32 23 569999999
Q ss_pred CCCEEEeCCeeec------CCC-C-CH-HHHHHHHHHhcC-ceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHH
Q 021156 154 GATHVIVTSYVFN------NGQ-M-DL-ERLKDLVRVVGK-QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFL 223 (316)
Q Consensus 154 Gad~VVigt~~~~------~~~-~-~~-eli~ei~~~~G~-~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~ 223 (316)
|+.-+.|--.... .++ + ++ +++.++....-. ...-+-|-.|. |- ....++. +.++.++.+.
T Consensus 101 G~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART-Da---~~~~g~d-----eAI~Ra~ay~ 171 (285)
T TIGR02317 101 GAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIART-DA---RAVEGLD-----AAIERAKAYV 171 (285)
T ss_pred CCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEc-Cc---ccccCHH-----HHHHHHHHHH
Confidence 9999888332211 111 1 22 344444433210 11001111121 10 0111221 4678899999
Q ss_pred HcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcE---EEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 224 ASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPV---TYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 224 ~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPV---IasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
+.|++.+.++... +.+.++++.+.++.|+ ...+|-...-++.+|.++| +.-|+.|..+
T Consensus 172 ~AGAD~vfi~g~~--------~~e~i~~~~~~i~~Pl~~n~~~~~~~p~~s~~eL~~lG--v~~v~~~~~~ 232 (285)
T TIGR02317 172 EAGADMIFPEALT--------SLEEFRQFAKAVKVPLLANMTEFGKTPLFTADELREAG--YKMVIYPVTA 232 (285)
T ss_pred HcCCCEEEeCCCC--------CHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcC--CcEEEEchHH
Confidence 9999998876532 4678889988878888 3445543334678888898 8889999776
No 338
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=95.61 E-value=0.041 Score=53.19 Aligned_cols=71 Identities=21% Similarity=0.127 Sum_probs=51.8
Q ss_pred HHHHHHHHcCCCcceEEEecCCc-----ccHHHHHHH---HHhC--CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeee
Q 021156 97 EFANLYKEDGLTGGHAIMLGADP-----LSKAAAIEA---LHAY--PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVF 165 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvDLda~~-----~~~~~i~~~---v~~~--~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~ 165 (316)
+-|+...+.|++.+.+..-.+.. .....+.++ .+++ .+||++.||||. .|+-+++..||+.|-+|+.++
T Consensus 225 ~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l 304 (344)
T cd02922 225 EDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFL 304 (344)
T ss_pred HHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 57778888999988887643321 111122222 2223 489999999995 999999999999999999988
Q ss_pred cC
Q 021156 166 NN 167 (316)
Q Consensus 166 ~~ 167 (316)
..
T Consensus 305 ~~ 306 (344)
T cd02922 305 YA 306 (344)
T ss_pred HH
Confidence 75
No 339
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=95.60 E-value=0.047 Score=53.68 Aligned_cols=73 Identities=11% Similarity=0.065 Sum_probs=48.6
Q ss_pred cCHHHHHHHHHHcCCCcceE---EEecCCcccHHHHHHHHHh--CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156 93 KSAAEFANLYKEDGLTGGHA---IMLGADPLSKAAAIEALHA--YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN 167 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~l---vDLda~~~~~~~i~~~v~~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~ 167 (316)
.+|.+.++.+ ..+.+.+-+ +|-++..+....+ +.+++ .+.+++++|||+.+++..+.++|||.+|+|++.++.
T Consensus 287 ~tp~e~i~~l-~~~vD~Vllht~vdp~~~~~~~~kI-~~ikk~~~~~~I~VdGGI~~eti~~l~~aGADivVVGsaIf~a 364 (391)
T PRK13307 287 EDPVKLLESL-KVKPDVVELHRGIDEEGTEHAWGNI-KEIKKAGGKILVAVAGGVRVENVEEALKAGADILVVGRAITKS 364 (391)
T ss_pred CCHHHHHHHh-hCCCCEEEEccccCCCcccchHHHH-HHHHHhCCCCcEEEECCcCHHHHHHHHHcCCCEEEEeHHHhCC
Confidence 4688888777 444443322 2222112223333 33333 467899999999999999999999999999998754
No 340
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.50 E-value=0.26 Score=47.67 Aligned_cols=150 Identities=12% Similarity=0.098 Sum_probs=92.4
Q ss_pred CcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCC------CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEE-e--
Q 021156 134 GGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQ------MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIV-T-- 204 (316)
Q Consensus 134 ~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~------~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~-~-- 204 (316)
+-+-.+=|-..+.+.+.+++|++.|.++...+.|+. =|....+++++..-+ .-+++-.-. | .|. .
T Consensus 78 ValHLDHg~~~e~i~~ai~~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~--~Gv~VEaEL--G--~vgg~e~ 151 (347)
T PRK09196 78 VVMHQDHGNSPATCQRAIQLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHA--CGVSVEGEL--G--CLGSLET 151 (347)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHH--cCCeEEEEE--e--eccCccc
Confidence 334555565568999999999999999766542110 025555665544211 113333210 1 111 0
Q ss_pred ------CCc--c-----eecccCHHHHHHHHHHcCCCEEE-----EeecCCcc-ccC--CCCHHHHHHHhhcC-CCcEEE
Q 021156 205 ------DRW--Q-----KFSDVYLDERVLDFLASYADEFL-----VHGVDVEG-KKL--GIDDELVALLGKYS-PIPVTY 262 (316)
Q Consensus 205 ------~gw--~-----~~~~~~~~e~a~~~~~~Ga~~il-----vtdi~~dG-~~~--G~d~eli~~l~~~~-~iPVIa 262 (316)
.+. . +..--++.+..+...+.|++.+- .|..-..+ .-. ..|++.++++.+.+ ++|+..
T Consensus 152 ~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVL 231 (347)
T PRK09196 152 GMGGEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVM 231 (347)
T ss_pred cccccccCcccccccchhhcCCCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEE
Confidence 010 0 00012577777777788999763 34443321 111 16999999999988 799999
Q ss_pred EeCCCC----------------------HHHHHHHHHhCCCcCEEEEccch
Q 021156 263 AGGVTT----------------------MADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 263 sGGI~s----------------------~eDi~~l~~~G~g~~gVivG~Al 291 (316)
-||=+. .++++++.+.| +..|=|++.+
T Consensus 232 HGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~G--I~KINi~Tdl 280 (347)
T PRK09196 232 HGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHG--VRKVNIDTDL 280 (347)
T ss_pred eCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCC--CceEEeChHH
Confidence 998755 37789999988 9999999877
No 341
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=95.47 E-value=0.059 Score=51.82 Aligned_cols=69 Identities=19% Similarity=0.204 Sum_probs=50.0
Q ss_pred HHHHHHHHHHcCCCcceEEEecCCcc-----------------------c---HHHHHHHHH-hCCCcEEEecCCCH-HH
Q 021156 95 AAEFANLYKEDGLTGGHAIMLGADPL-----------------------S---KAAAIEALH-AYPGGLQVGGGINS-DN 146 (316)
Q Consensus 95 p~e~a~~~~~~G~~~l~lvDLda~~~-----------------------~---~~~i~~~v~-~~~~pl~vGGGIr~-e~ 146 (316)
..+.|+.+.++|++.+.+ .+... . ...+.++.+ ..++|++..||||+ +|
T Consensus 192 ~~~~a~~L~~aGvd~I~V---sg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~d 268 (333)
T TIGR02151 192 SKEVAKLLADAGVSAIDV---AGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGLD 268 (333)
T ss_pred CHHHHHHHHHcCCCEEEE---CCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHHH
Confidence 457899999999875554 43210 0 012223333 35799999999995 99
Q ss_pred HHHHHHcCCCEEEeCCeeec
Q 021156 147 SLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 147 ~~~~l~~Gad~VVigt~~~~ 166 (316)
+.+++..|||.|-+|+.++.
T Consensus 269 i~kaLalGAd~V~igr~~L~ 288 (333)
T TIGR02151 269 VAKAIALGADAVGMARPFLK 288 (333)
T ss_pred HHHHHHhCCCeehhhHHHHH
Confidence 99999999999999998874
No 342
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=95.45 E-value=0.019 Score=55.64 Aligned_cols=95 Identities=15% Similarity=0.099 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHcCCCcceEEE--ecC-Cc--------ccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcC-CCEEE
Q 021156 94 SAAEFANLYKEDGLTGGHAIM--LGA-DP--------LSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEG-ATHVI 159 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvD--Lda-~~--------~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~G-ad~VV 159 (316)
+.+++++.++++|++.+|+.- .+. .. .......+.++ .+++||.++|+++ .++++++++.| +|.|.
T Consensus 225 e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~ 304 (353)
T cd02930 225 EVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVS 304 (353)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhH
Confidence 456788999999988887721 111 00 01223333444 5889999999998 59999999976 99999
Q ss_pred eCCeeecCCCCCHHHHHHHHHHhcCceEEEeeee
Q 021156 160 VTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSC 193 (316)
Q Consensus 160 igt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~ 193 (316)
+|-.++.| |++++++.+.- .+.|..++.+
T Consensus 305 ~gR~~l~d----P~~~~k~~~g~-~~~i~~Ci~c 333 (353)
T cd02930 305 MARPFLAD----PDFVAKAAAGR-ADEINTCIAC 333 (353)
T ss_pred hhHHHHHC----ccHHHHHHhCC-cccCcCchhh
Confidence 99999998 99999998743 2345555554
No 343
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=95.43 E-value=0.47 Score=44.98 Aligned_cols=174 Identities=15% Similarity=0.129 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHcCCCcceEEEec--CC--------cccHHHH----HHHHHhCCCcEEEec--CC----CH-HHHHHHHH
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLG--AD--------PLSKAAA----IEALHAYPGGLQVGG--GI----NS-DNSLSYIE 152 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLd--a~--------~~~~~~i----~~~v~~~~~pl~vGG--GI----r~-e~~~~~l~ 152 (316)
|+. -|+..+++|++.+++-=.. +. .....++ .++++.+++||++++ |. +. ..++++.+
T Consensus 25 Da~-SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~ 103 (294)
T TIGR02319 25 DAL-SAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFER 103 (294)
T ss_pred CHH-HHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHH
Confidence 676 6777888888766542111 10 1123333 333445789999863 32 22 45899999
Q ss_pred cCCCEEEeCCeeec------CCC-C-C-HHHHHHHHHHhc-Cce----EEEeeeeeecCCeeEEEeCCcceecccCHHHH
Q 021156 153 EGATHVIVTSYVFN------NGQ-M-D-LERLKDLVRVVG-KQR----LVLDLSCRKKDGKYAIVTDRWQKFSDVYLDER 218 (316)
Q Consensus 153 ~Gad~VVigt~~~~------~~~-~-~-~eli~ei~~~~G-~~~----IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~ 218 (316)
+|+.-+.|--.... .++ + + .+++++|....- .+. |+.-.|.+ ...++. +.++.
T Consensus 104 aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~--------~~~g~d-----eaI~R 170 (294)
T TIGR02319 104 VGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDAR--------ESFGLD-----EAIRR 170 (294)
T ss_pred cCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEeccc--------ccCCHH-----HHHHH
Confidence 99999888332221 111 1 2 234444443321 011 11222221 012221 46788
Q ss_pred HHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcE---EEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 219 VLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPV---TYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 219 a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPV---IasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
++.+.+.|++.+.++.. .+.+.++++.+.++.|+ +..||-...-.+.+|.++| +.-|+.+..+
T Consensus 171 a~aY~eAGAD~ifi~~~--------~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~eL~~lG--~~~v~~~~~~ 236 (294)
T TIGR02319 171 SREYVAAGADCIFLEAM--------LDVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKELESIG--YNLAIYPLSG 236 (294)
T ss_pred HHHHHHhCCCEEEecCC--------CCHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHHHHHcC--CcEEEEcHHH
Confidence 99999999999987643 25678889988877787 4555544445688888888 8889999655
No 344
>PRK14567 triosephosphate isomerase; Provisional
Probab=95.41 E-value=0.19 Score=46.59 Aligned_cols=147 Identities=11% Similarity=0.096 Sum_probs=85.0
Q ss_pred HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHhcC-ceEEEeeeeeecCCeeEEEeCCcceecccCHHHH-HHH
Q 021156 146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVVGK-QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDER-VLD 221 (316)
Q Consensus 146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~G~-~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~-a~~ 221 (316)
.+..+.+.|++.|+||=.-++. ++.|...-+++....-. =..++++.-... . + ..+ ...+. .++
T Consensus 77 S~~mLkd~G~~yviiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pI~CiGEt~e-e----r------e~g-~~~~vv~~Q 144 (253)
T PRK14567 77 SARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLD-D----R------QSG-KLKQVLATQ 144 (253)
T ss_pred CHHHHHHcCCCEEEECcccccCccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHH-H----H------HcC-CHHHHHHHH
Confidence 3778889999999999765543 33333333344333311 235566642100 0 0 001 11111 112
Q ss_pred HHHc--C-----CCEE--EEeecCCccccCCCCHHHHHH----Hhh---------cCCCcEEEEeCCCCHHHHHHHHHhC
Q 021156 222 FLAS--Y-----ADEF--LVHGVDVEGKKLGIDDELVAL----LGK---------YSPIPVTYAGGVTTMADLEKIKVAG 279 (316)
Q Consensus 222 ~~~~--G-----a~~i--lvtdi~~dG~~~G~d~eli~~----l~~---------~~~iPVIasGGI~s~eDi~~l~~~G 279 (316)
+... + ...+ -|-.+..-||..-+..+.+++ +++ ..+++++++|+| +++++.++++.+
T Consensus 145 l~~~l~~i~~~~~~~ivIAYEPvWAIGTG~~as~e~i~~~~~~IR~~l~~~~~~~a~~v~IlYGGSV-~~~N~~~l~~~~ 223 (253)
T PRK14567 145 LSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRSLLAKVDERLAKNIKIVYGGSL-KAENAKDILSLP 223 (253)
T ss_pred HHHHHccCCHHHhCCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHhhcccccccceEEEcCcC-CHHHHHHHHcCC
Confidence 2110 1 1223 256777778877666554433 332 125899999999 999999999998
Q ss_pred CCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156 280 IGRVDVTVGSALDIFGGNLAYKDVVAWHAQ 309 (316)
Q Consensus 280 ~g~~gVivG~Al~~~~g~~~~~~~~~~~~~ 309 (316)
++||+.||+|- + .+-.|.++++..++
T Consensus 224 -diDG~LVGgas--L-~~~~F~~Ii~~~~~ 249 (253)
T PRK14567 224 -DVDGGLIGGAS--L-KAAEFNEIINQANK 249 (253)
T ss_pred -CCCEEEeehhh--h-cHHHHHHHHHHHHh
Confidence 69999999999 6 33356666655443
No 345
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=95.41 E-value=0.076 Score=50.80 Aligned_cols=81 Identities=15% Similarity=0.231 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCc--------c--------cHHHHHHHHHhC-CCcEEEecCCC-HHHHHHHHHcCC
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADP--------L--------SKAAAIEALHAY-PGGLQVGGGIN-SDNSLSYIEEGA 155 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~--------~--------~~~~i~~~v~~~-~~pl~vGGGIr-~e~~~~~l~~Ga 155 (316)
+..++++.+.++|++. +.+.+-. . +...+.+..+.+ .+|++.-|||+ .+|+++.+. ||
T Consensus 142 ~~~~~~~~l~~~G~~~---itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~ 217 (318)
T TIGR00742 142 FLCDFVEIVSGKGCQN---FIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HV 217 (318)
T ss_pred HHHHHHHHHHHcCCCE---EEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CC
Confidence 3457788888888764 4444321 0 233343443455 79999999998 599999986 99
Q ss_pred CEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156 156 THVIVTSYVFNNGQMDLERLKDLVRVV 182 (316)
Q Consensus 156 d~VVigt~~~~~~~~~~eli~ei~~~~ 182 (316)
|.|.||..++.| |.++.++.+.+
T Consensus 218 dgVMigRgal~n----P~if~~~~~~l 240 (318)
T TIGR00742 218 DGVMVGREAYEN----PYLLANVDREI 240 (318)
T ss_pred CEEEECHHHHhC----CHHHHHHHHHh
Confidence 999999999998 99999997654
No 346
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=95.39 E-value=0.061 Score=52.38 Aligned_cols=83 Identities=16% Similarity=0.127 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCCCcceEEEec--CCcccHHHHHHHHH-hCCCcEEEecCCCHHHHHHHHHcC-CCEEEeCCeeecCCCC
Q 021156 95 AAEFANLYKEDGLTGGHAIMLG--ADPLSKAAAIEALH-AYPGGLQVGGGINSDNSLSYIEEG-ATHVIVTSYVFNNGQM 170 (316)
Q Consensus 95 p~e~a~~~~~~G~~~l~lvDLd--a~~~~~~~i~~~v~-~~~~pl~vGGGIr~e~~~~~l~~G-ad~VVigt~~~~~~~~ 170 (316)
.+++++.+.+.|++.+|+..-+ ....-.....+.++ .+++|+.++|+++.++++++++.| ||.|-+|-.++.|
T Consensus 251 ~~~~~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~~~~~~ae~~i~~G~~D~V~~gR~~iad--- 327 (362)
T PRK10605 251 ALYLIEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFHGVIIGAGAYTAEKAETLIGKGLIDAVAFGRDYIAN--- 327 (362)
T ss_pred HHHHHHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCCEEEECHHhhhC---
Confidence 4677888888888877765321 11111223334454 578999999998679999999988 9999999999998
Q ss_pred CHHHHHHHHHH
Q 021156 171 DLERLKDLVRV 181 (316)
Q Consensus 171 ~~eli~ei~~~ 181 (316)
|+++.++.+.
T Consensus 328 -Pd~~~k~~~g 337 (362)
T PRK10605 328 -PDLVARLQRK 337 (362)
T ss_pred -ccHHHHHhcC
Confidence 9999999763
No 347
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=95.37 E-value=0.031 Score=54.37 Aligned_cols=72 Identities=19% Similarity=0.125 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCC-----cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeec
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGAD-----PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~-----~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~ 166 (316)
++. -|+...+.|++++.+-.-.+. ......+.++.+.+++||++.|||| -.|+-+++..||+.|.+|..++.
T Consensus 246 ~~e-da~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~ 323 (361)
T cd04736 246 TAE-DAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAATYKPVLIDSGIRRGSDIVKALALGANAVLLGRATLY 323 (361)
T ss_pred CHH-HHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 344 677777889887665443322 1223444455555789999999999 59999999999999999998874
No 348
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=95.35 E-value=1.1 Score=40.85 Aligned_cols=161 Identities=17% Similarity=0.190 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCC---cccHHHHHHHHHhCCCcEEE-----ecCC-------C-H-HHHHHHHHcCCC
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGAD---PLSKAAAIEALHAYPGGLQV-----GGGI-------N-S-DNSLSYIEEGAT 156 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~---~~~~~~i~~~v~~~~~pl~v-----GGGI-------r-~-e~~~~~l~~Gad 156 (316)
||. -+....+.|++++-+-+-=+. .+.--.++++++..++|+.+ ||-+ . . +|++.+-++|++
T Consensus 10 n~~-~l~~A~~~GAdRiELC~~La~GG~TPSyG~~k~a~~~~~ipv~~MIRPRgGdFvY~~~E~~iM~~DI~~~~~lG~~ 88 (241)
T COG3142 10 NVE-GLLAAQAAGADRIELCDALAEGGLTPSYGVIKEAVELSKIPVYVMIRPRGGDFVYSDDELEIMLEDIRLARELGVQ 88 (241)
T ss_pred CHh-hHHHHHHcCCceeehhhccccCCCCCCHHHHHHHHhhcCCceEEEEecCCCCcccChHHHHHHHHHHHHHHHcCCC
Confidence 554 455556789999988874322 45666677777767777765 5554 2 2 578888999999
Q ss_pred EEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC
Q 021156 157 HVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD 236 (316)
Q Consensus 157 ~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~ 236 (316)
-||+|...- ||++|.+.++++.+.-++ +++ .+...+... .++.+..+++.++|+.+|+-+.
T Consensus 89 GVV~G~lt~-dg~iD~~~le~Li~aA~g------L~v--------TFHrAFD~~--~d~~~ale~li~~Gv~RILTsG-- 149 (241)
T COG3142 89 GVVLGALTA-DGNIDMPRLEKLIEAAGG------LGV--------TFHRAFDEC--PDPLEALEQLIELGVERILTSG-- 149 (241)
T ss_pred cEEEeeecC-CCccCHHHHHHHHHHccC------Cce--------eeehhhhhc--CCHHHHHHHHHHCCCcEEecCC--
Confidence 999998764 478999999999987642 322 111233322 2588899999999999998333
Q ss_pred CccccCCC-CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHH
Q 021156 237 VEGKKLGI-DDELVALLGKYS--PIPVTYAGGVTTMADLEKIKV 277 (316)
Q Consensus 237 ~dG~~~G~-d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~ 277 (316)
|..+-. .++.++++.+.. .+.+.++|||+. +.+..+..
T Consensus 150 --g~~sa~eg~~~l~~li~~a~gri~Im~GaGV~~-~N~~~l~~ 190 (241)
T COG3142 150 --GKASALEGLDLLKRLIEQAKGRIIIMAGAGVRA-ENIAELVL 190 (241)
T ss_pred --CcCchhhhHHHHHHHHHHhcCCEEEEeCCCCCH-HHHHHHHH
Confidence 222222 566777776543 455666666654 66777744
No 349
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=95.31 E-value=0.055 Score=52.20 Aligned_cols=82 Identities=18% Similarity=0.232 Sum_probs=60.0
Q ss_pred HHHHHHHHHHcCCCcceEEEecC-C--cccHHHHHHHHH-hCCCcEEEecCCCHHHHHHHHHcC-CCEEEeCCeeecCCC
Q 021156 95 AAEFANLYKEDGLTGGHAIMLGA-D--PLSKAAAIEALH-AYPGGLQVGGGINSDNSLSYIEEG-ATHVIVTSYVFNNGQ 169 (316)
Q Consensus 95 p~e~a~~~~~~G~~~l~lvDLda-~--~~~~~~i~~~v~-~~~~pl~vGGGIr~e~~~~~l~~G-ad~VVigt~~~~~~~ 169 (316)
-+++++.+.+.|++.+++.-=.- . ........+.++ .+++||++-|||+.++++++++.| ||.|.+|-.++.|
T Consensus 243 ~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~a~~~l~~g~~D~V~~gR~~lad-- 320 (338)
T cd02933 243 FSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGGYDAESAEAALADGKADLVAFGRPFIAN-- 320 (338)
T ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCCEEEeCHhhhhC--
Confidence 45788888888887666522110 0 112223333344 578999999999988899999976 9999999999998
Q ss_pred CCHHHHHHHHH
Q 021156 170 MDLERLKDLVR 180 (316)
Q Consensus 170 ~~~eli~ei~~ 180 (316)
|+++.++.+
T Consensus 321 --P~~~~k~~~ 329 (338)
T cd02933 321 --PDLVERLKN 329 (338)
T ss_pred --cCHHHHHhc
Confidence 999998865
No 350
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=95.28 E-value=0.12 Score=45.80 Aligned_cols=75 Identities=24% Similarity=0.156 Sum_probs=49.5
Q ss_pred cCHHHHHHHHHHcCCCcceEEE-ecCC---cccHHHHHHHHHhC-CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156 93 KSAAEFANLYKEDGLTGGHAIM-LGAD---PLSKAAAIEALHAY-PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN 167 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvD-Lda~---~~~~~~i~~~v~~~-~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~ 167 (316)
..|.+.++.+.+.|++.+.+-- .++. ......+.+..+.. ..++.+-|||+.+.+..++++||+.+++|++.++.
T Consensus 113 ~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI~~~n~~~~~~~Ga~~v~vGsai~~~ 192 (206)
T TIGR03128 113 KDKVKRAKELKELGADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKA 192 (206)
T ss_pred CChHHHHHHHHHcCCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCCcEEEECCcCHHHHHHHHHcCCCEEEEeehhcCC
Confidence 3466677777777888554310 0000 11223344433333 35788899999999999999999999999998874
No 351
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.22 E-value=0.062 Score=51.68 Aligned_cols=83 Identities=13% Similarity=0.047 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCcc-----------c----HHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcC-C
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADPL-----------S----KAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEG-A 155 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~~-----------~----~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~G-a 155 (316)
+-+++++.+.+.|++.+++--=.-... . .....+.++ .+++||+++|+|+ .++++++++.| |
T Consensus 237 ea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~a 316 (338)
T cd04733 237 DALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAV 316 (338)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCC
Confidence 345788888888887766421000000 0 123333344 5899999999998 59999999987 9
Q ss_pred CEEEeCCeeecCCCCCHHHHHHHHH
Q 021156 156 THVIVTSYVFNNGQMDLERLKDLVR 180 (316)
Q Consensus 156 d~VVigt~~~~~~~~~~eli~ei~~ 180 (316)
|.|.+|-.++.| |+++.++.+
T Consensus 317 D~V~lgR~~iad----P~~~~k~~~ 337 (338)
T cd04733 317 DGIGLARPLALE----PDLPNKLLA 337 (338)
T ss_pred CeeeeChHhhhC----ccHHHHHhc
Confidence 999999999998 999988753
No 352
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.22 E-value=0.017 Score=55.91 Aligned_cols=95 Identities=16% Similarity=0.205 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHcCCCcceEEEec--CC----cccHHHHHHHHH-hC--CCcEEEecCCC-HHHHHHHHHcCCCEEEeCCe
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLG--AD----PLSKAAAIEALH-AY--PGGLQVGGGIN-SDNSLSYIEEGATHVIVTSY 163 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLd--a~----~~~~~~i~~~v~-~~--~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~ 163 (316)
+.+++++.+.+.|++.+|+---. .. ........+.++ .+ ++|+++-|||+ .++++++++.|||.|.+|..
T Consensus 236 e~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~ 315 (353)
T cd04735 236 DTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRG 315 (353)
T ss_pred HHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHH
Confidence 45678899998998877764211 10 011222333343 33 78999999998 59999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHHhcCceEEEeeee
Q 021156 164 VFNNGQMDLERLKDLVRVVGKQRLVLDLSC 193 (316)
Q Consensus 164 ~~~~~~~~~eli~ei~~~~G~~~IvvslD~ 193 (316)
++.| |+++.++.+.- .+.|..+++.
T Consensus 316 liad----Pdl~~k~~~G~-~~~ir~ci~~ 340 (353)
T cd04735 316 LLVD----PDWVEKIKEGR-EDEINLEIDP 340 (353)
T ss_pred HHhC----ccHHHHHHcCC-hhhhhhcCCH
Confidence 9997 99999997643 2456666664
No 353
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=95.21 E-value=0.072 Score=50.73 Aligned_cols=88 Identities=24% Similarity=0.315 Sum_probs=65.9
Q ss_pred ccCHHHHHHHHHHcCCCcceEEEe-------c--C------C-------cccHH---HHHHHH-HhCC--CcEEEecCCC
Q 021156 92 DKSAAEFANLYKEDGLTGGHAIML-------G--A------D-------PLSKA---AAIEAL-HAYP--GGLQVGGGIN 143 (316)
Q Consensus 92 ~~~p~e~a~~~~~~G~~~l~lvDL-------d--a------~-------~~~~~---~i~~~v-~~~~--~pl~vGGGIr 143 (316)
..|-.++|+...++|++++.++.- | . . +...+ .++..+ +..+ +||+-=|||.
T Consensus 172 ~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~ 251 (310)
T COG0167 172 ITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIE 251 (310)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcC
Confidence 357889999999999999988871 1 1 0 01122 233333 3444 9999999998
Q ss_pred H-HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156 144 S-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVV 182 (316)
Q Consensus 144 ~-e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~ 182 (316)
+ +|+.+.+.+||+.|-|+|+++.+| |.+++++.+..
T Consensus 252 s~~DA~E~i~aGA~~vQv~Tal~~~G---p~i~~~I~~~l 288 (310)
T COG0167 252 TGEDALEFILAGASAVQVGTALIYKG---PGIVKEIIKGL 288 (310)
T ss_pred cHHHHHHHHHcCCchheeeeeeeeeC---chHHHHHHHHH
Confidence 5 999999999999999999999884 77777776654
No 354
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=95.21 E-value=0.039 Score=53.22 Aligned_cols=84 Identities=12% Similarity=0.094 Sum_probs=64.1
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCCc----------ccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcC-CCEEE
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGADP----------LSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEG-ATHVI 159 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~~----------~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~G-ad~VV 159 (316)
.+.+++++.+++.|++.+++ .+.. .......+.++ .+++|+++.|+|+ .++++++++.| ||.|.
T Consensus 227 ~e~~~i~~~l~~~gvD~i~v---s~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~ 303 (337)
T PRK13523 227 QDYVQYAKWMKEQGVDLIDV---SSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIF 303 (337)
T ss_pred HHHHHHHHHHHHcCCCEEEe---CCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHH
Confidence 35668889998888876665 3210 11122334444 5789999999998 58999999987 99999
Q ss_pred eCCeeecCCCCCHHHHHHHHHHhc
Q 021156 160 VTSYVFNNGQMDLERLKDLVRVVG 183 (316)
Q Consensus 160 igt~~~~~~~~~~eli~ei~~~~G 183 (316)
+|-.++.| |+++.++.+..+
T Consensus 304 ~gR~~iad----P~~~~k~~~~~~ 323 (337)
T PRK13523 304 IGRELLRN----PYFPRIAAKELG 323 (337)
T ss_pred hhHHHHhC----ccHHHHHHHHcC
Confidence 99999998 999999988875
No 355
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=95.21 E-value=0.058 Score=54.82 Aligned_cols=71 Identities=15% Similarity=0.083 Sum_probs=49.7
Q ss_pred HHHHHHHHcCCCcceEE---------EecCC--cc---cHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeC
Q 021156 97 EFANLYKEDGLTGGHAI---------MLGAD--PL---SKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVT 161 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lv---------DLda~--~~---~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVig 161 (316)
+-|+...++|++.+.+= -..+. .+ ....+-+++++.++|++..|||+ ..|+.+++.+||+.|.+|
T Consensus 301 e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 301 YQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTVMMG 380 (505)
T ss_pred HHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 46777778898876551 00000 01 11223344456789999999998 699999999999999999
Q ss_pred CeeecC
Q 021156 162 SYVFNN 167 (316)
Q Consensus 162 t~~~~~ 167 (316)
|.+...
T Consensus 381 s~~~~t 386 (505)
T PLN02274 381 SFLAGT 386 (505)
T ss_pred hhhccc
Confidence 998763
No 356
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=95.20 E-value=0.063 Score=49.00 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=30.3
Q ss_pred CCcEEEecCCCHHHHHHHHHcCCCEEEeCCe-eec
Q 021156 133 PGGLQVGGGINSDNSLSYIEEGATHVIVTSY-VFN 166 (316)
Q Consensus 133 ~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~-~~~ 166 (316)
+..++|+|||+.+.+..+.++|||.+|+||. .+.
T Consensus 169 ~~~IeVDGGI~~~~i~~~~~aGad~~V~Gss~iF~ 203 (229)
T PRK09722 169 EYLIEVDGSCNQKTYEKLMEAGADVFIVGTSGLFN 203 (229)
T ss_pred CeEEEEECCCCHHHHHHHHHcCCCEEEEChHHHcC
Confidence 4669999999999999999999999999965 665
No 357
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=95.20 E-value=0.036 Score=49.00 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=34.6
Q ss_pred HHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHH
Q 021156 125 AIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDL 178 (316)
Q Consensus 125 i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei 178 (316)
+++.+.+.++|++.-|+|+ .+++.+++++||+-|||||+.-+ |+.+.+.
T Consensus 136 lv~~l~~~~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAITr-----P~~It~~ 185 (192)
T PF04131_consen 136 LVRELVQADVPVIAEGRIHTPEQAAKALELGAHAVVVGSAITR-----PQEITKR 185 (192)
T ss_dssp HHHHHHHTTSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH------HHHHHHH
T ss_pred HHHHHHhCCCcEeecCCCCCHHHHHHHHhcCCeEEEECcccCC-----HHHHHHH
Confidence 3444444589999999998 59999999999999999998654 7665443
No 358
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.18 E-value=0.076 Score=52.41 Aligned_cols=71 Identities=18% Similarity=0.076 Sum_probs=50.0
Q ss_pred HHHHHHHHcCCCcceEEEecCC----------c-ccHHHH---HHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeC
Q 021156 97 EFANLYKEDGLTGGHAIMLGAD----------P-LSKAAA---IEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVT 161 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvDLda~----------~-~~~~~i---~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVig 161 (316)
+.|+.+.++|++.+.+=+=.+. . +....+ .+.++..++|++..|||+ .+|+.+++.+||+.|++|
T Consensus 206 e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 206 EAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIG 285 (404)
T ss_pred HHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 5788888899997763111110 0 122223 222334689999999998 699999999999999999
Q ss_pred CeeecC
Q 021156 162 SYVFNN 167 (316)
Q Consensus 162 t~~~~~ 167 (316)
+.+-..
T Consensus 286 s~~agt 291 (404)
T PRK06843 286 NLFAGT 291 (404)
T ss_pred ceeeee
Confidence 998664
No 359
>PRK15452 putative protease; Provisional
Probab=95.18 E-value=0.43 Score=47.75 Aligned_cols=133 Identities=12% Similarity=0.158 Sum_probs=90.0
Q ss_pred HHHHHHHHHcCCCEEEeCCeeecC----CCCCHHHHHHHHH---HhcCceEEEeeeeeecCCeeEEEeCCcceecccCHH
Q 021156 144 SDNSLSYIEEGATHVIVTSYVFNN----GQMDLERLKDLVR---VVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLD 216 (316)
Q Consensus 144 ~e~~~~~l~~Gad~VVigt~~~~~----~~~~~eli~ei~~---~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~ 216 (316)
.+.++.++++|||.|.+|...+.- ..+..+-+++.++ ..| .++.+.+.....++ .-..+.
T Consensus 13 ~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g-~kvyvt~n~i~~e~------------el~~~~ 79 (443)
T PRK15452 13 LKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALG-KKFYVVVNIAPHNA------------KLKTFI 79 (443)
T ss_pred HHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcC-CEEEEEecCcCCHH------------HHHHHH
Confidence 588999999999999998765431 1233455555543 344 45666665321110 011355
Q ss_pred HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhc-CCCcEEEEeC--CCCHHHHHHHHHhCCCcCEEEEccchhh
Q 021156 217 ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKY-SPIPVTYAGG--VTTMADLEKIKVAGIGRVDVTVGSALDI 293 (316)
Q Consensus 217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~-~~iPVIasGG--I~s~eDi~~l~~~G~g~~gVivG~Al~~ 293 (316)
+..+.+.+.|++.+++.+.. ++..+++. .++|+.++-. +.+...+..+.+.| ++.|++.+=+
T Consensus 80 ~~l~~l~~~gvDgvIV~d~G-----------~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG--~~rvvLSrEL-- 144 (443)
T PRK15452 80 RDLEPVIAMKPDALIMSDPG-----------LIMMVREHFPEMPIHLSVQANAVNWATVKFWQQMG--LTRVILSREL-- 144 (443)
T ss_pred HHHHHHHhCCCCEEEEcCHH-----------HHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCC--CcEEEECCcC--
Confidence 66778889999999887653 45555553 4788988764 67888888899988 8888888665
Q ss_pred ccCcccHHHHHHHHHh
Q 021156 294 FGGNLAYKDVVAWHAQ 309 (316)
Q Consensus 294 ~~g~~~~~~~~~~~~~ 309 (316)
+++|+.+..++
T Consensus 145 -----sl~EI~~i~~~ 155 (443)
T PRK15452 145 -----SLEEIEEIRQQ 155 (443)
T ss_pred -----CHHHHHHHHhh
Confidence 78998887644
No 360
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=95.15 E-value=0.19 Score=44.76 Aligned_cols=116 Identities=20% Similarity=0.189 Sum_probs=65.9
Q ss_pred HHHHHHHHcCCCEEEe--CCeeecCCC--CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHH
Q 021156 145 DNSLSYIEEGATHVIV--TSYVFNNGQ--MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVL 220 (316)
Q Consensus 145 e~~~~~l~~Gad~VVi--gt~~~~~~~--~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~ 220 (316)
.+++.+++.|||-|-+ .-..+.++. ...+.+.++++... . +-+| .+.-.+-.. .-.....++
T Consensus 73 ~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~-g-----~~lk------vI~e~~~l~--~~~i~~a~r 138 (203)
T cd00959 73 AEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACG-G-----APLK------VILETGLLT--DEEIIKACE 138 (203)
T ss_pred HHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcC-C-----CeEE------EEEecCCCC--HHHHHHHHH
Confidence 5689999999997544 222222211 01344555555442 1 1111 111111111 113555678
Q ss_pred HHHHcCCCEEEEeecCCcccc-CCCCHH---HHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhC
Q 021156 221 DFLASYADEFLVHGVDVEGKK-LGIDDE---LVALLGKYSPIPVTYAGGVTTMADLEKIKVAG 279 (316)
Q Consensus 221 ~~~~~Ga~~ilvtdi~~dG~~-~G~d~e---li~~l~~~~~iPVIasGGI~s~eDi~~l~~~G 279 (316)
...+.|++.+= |+ .|.. .|...+ .+++..+ .++||-++||+++.+++.++..+|
T Consensus 139 ia~e~GaD~IK-Ts---TG~~~~~at~~~v~~~~~~~~-~~v~ik~aGGikt~~~~l~~~~~g 196 (203)
T cd00959 139 IAIEAGADFIK-TS---TGFGPGGATVEDVKLMKEAVG-GRVGVKAAGGIRTLEDALAMIEAG 196 (203)
T ss_pred HHHHhCCCEEE-cC---CCCCCCCCCHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHhC
Confidence 88899999652 32 2332 333444 4444444 578999999999999999999998
No 361
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=95.14 E-value=0.063 Score=52.61 Aligned_cols=92 Identities=16% Similarity=0.178 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCC---------c------ccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcC-C
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGAD---------P------LSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEG-A 155 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~---------~------~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~G-a 155 (316)
+-+++++.+.++|++.+++- +. . .......+.++ .+++|+++-|||+ .++++++++.| |
T Consensus 253 ~~~~~~~~l~~~gvD~l~vs---~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~ 329 (382)
T cd02931 253 EGLKAAKILEEAGYDALDVD---AGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGRMEDPELASEAINEGIA 329 (382)
T ss_pred HHHHHHHHHHHhCCCEEEeC---CCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCC
Confidence 34578888888887766653 21 0 01112223343 5789999999998 59999999976 9
Q ss_pred CEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeee
Q 021156 156 THVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSC 193 (316)
Q Consensus 156 d~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~ 193 (316)
|.|.+|-.++.| |++++++.+-- .+.|..++-+
T Consensus 330 D~V~~gR~~lad----P~l~~k~~~g~-~~~i~~Ci~C 362 (382)
T cd02931 330 DMISLGRPLLAD----PDVVNKIRRGR-FKNIRPCISC 362 (382)
T ss_pred CeeeechHhHhC----ccHHHHHHcCC-cccCcCChhh
Confidence 999999999998 99999997632 2346556554
No 362
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.12 E-value=0.034 Score=53.31 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=51.7
Q ss_pred HHHHHHHHcCCCcceEEEecCC-----------cccHHHHHHHHH---hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeC
Q 021156 97 EFANLYKEDGLTGGHAIMLGAD-----------PLSKAAAIEALH---AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVT 161 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvDLda~-----------~~~~~~i~~~v~---~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVig 161 (316)
|.++.+.++|++.+.+=-=.+. -+....+.++.+ ..++|++.+|||+ +-|+-+++.+|||.|.+|
T Consensus 163 e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlG 242 (346)
T PRK05096 163 EMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLG 242 (346)
T ss_pred HHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHHcCCCEEEeC
Confidence 5889999999996554111110 123444555543 4689999999999 699999999999999999
Q ss_pred CeeecC
Q 021156 162 SYVFNN 167 (316)
Q Consensus 162 t~~~~~ 167 (316)
+.+-..
T Consensus 243 sllAGt 248 (346)
T PRK05096 243 GMLAGH 248 (346)
T ss_pred hhhcCc
Confidence 987553
No 363
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=95.12 E-value=0.073 Score=51.07 Aligned_cols=72 Identities=15% Similarity=0.113 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHcCCCcceEE----------EecCCc-ccHHHHHHHHH---hCCCcEEEecCCC-HHHHHHHHHcCCCEE
Q 021156 94 SAAEFANLYKEDGLTGGHAI----------MLGADP-LSKAAAIEALH---AYPGGLQVGGGIN-SDNSLSYIEEGATHV 158 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lv----------DLda~~-~~~~~i~~~v~---~~~~pl~vGGGIr-~e~~~~~l~~Gad~V 158 (316)
+| +.|+.+.++|++.+.+= .+++.. +....+.++.+ ..++|++.+|||| ..|+-+++.+||+.|
T Consensus 160 T~-e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~V 238 (343)
T TIGR01305 160 TG-EMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFV 238 (343)
T ss_pred CH-HHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEE
Confidence 45 47888889999976553 122222 33444555554 2468999999999 699999999999999
Q ss_pred EeCCeeec
Q 021156 159 IVTSYVFN 166 (316)
Q Consensus 159 Vigt~~~~ 166 (316)
.+|+.+-.
T Consensus 239 MlG~llAG 246 (343)
T TIGR01305 239 MLGGMFAG 246 (343)
T ss_pred EECHhhhC
Confidence 99976544
No 364
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=95.12 E-value=0.059 Score=52.56 Aligned_cols=70 Identities=19% Similarity=0.169 Sum_probs=49.3
Q ss_pred HHHHHHHHcCCCcceEEEecC-----CcccHHHHHHHHHhC--CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeec
Q 021156 97 EFANLYKEDGLTGGHAIMLGA-----DPLSKAAAIEALHAY--PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvDLda-----~~~~~~~i~~~v~~~--~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~ 166 (316)
+.|+...++|++++.+-.-.+ .+.....+.++...+ .+||++.||||. .|+.+++..||+.|.+|-.++.
T Consensus 240 eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~ 317 (367)
T TIGR02708 240 EDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIY 317 (367)
T ss_pred HHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHH
Confidence 477778888988654433222 122334455554444 489999999995 9999999999999999987554
No 365
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=95.12 E-value=0.54 Score=44.20 Aligned_cols=175 Identities=18% Similarity=0.127 Sum_probs=104.5
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCC------------cccHHHH----HHHHHhCCCcEEEec--CC----CH-HHHHHH
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGAD------------PLSKAAA----IEALHAYPGGLQVGG--GI----NS-DNSLSY 150 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~------------~~~~~~i----~~~v~~~~~pl~vGG--GI----r~-e~~~~~ 150 (316)
||. -|+..++.|++.++ +++. .....++ .++...+++|+.|+. |. +. +.+..+
T Consensus 27 d~~-sA~la~~aGF~al~---~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~ 102 (289)
T COG2513 27 DAG-SALLAERAGFKALY---LSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTVREL 102 (289)
T ss_pred CHH-HHHHHHHcCCeEEE---eccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHHHHH
Confidence 676 78888888988554 4432 1123333 334445789998863 33 33 669999
Q ss_pred HHcCCCEEEeCCeeec------CC-C-CC-HHHHHHHHHHhcCce-EEEeeeeeecCCeeEEEeCCcceecccCHHHHHH
Q 021156 151 IEEGATHVIVTSYVFN------NG-Q-MD-LERLKDLVRVVGKQR-LVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVL 220 (316)
Q Consensus 151 l~~Gad~VVigt~~~~------~~-~-~~-~eli~ei~~~~G~~~-IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~ 220 (316)
.++|+.-+-|=-.... +| + ++ .+.+.++....-..+ .-+-|-. ++..|....-.+.++.++
T Consensus 103 ~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~A---------RTda~~~~~ld~AI~Ra~ 173 (289)
T COG2513 103 EQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIA---------RTDALLVEGLDDAIERAQ 173 (289)
T ss_pred HHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEe---------ehHHHHhccHHHHHHHHH
Confidence 9999987766333322 11 1 12 244555544331100 0111111 222222111125788999
Q ss_pred HHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcE---EEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 221 DFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPV---TYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 221 ~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPV---IasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
.+.+.|++.|....+. +.+.++++++.+++|+ +...|-.-.-++.+|.++| +..|+.|-..
T Consensus 174 AY~eAGAD~if~~al~--------~~e~i~~f~~av~~pl~~N~t~~g~tp~~~~~~L~~~G--v~~V~~~~~~ 237 (289)
T COG2513 174 AYVEAGADAIFPEALT--------DLEEIRAFAEAVPVPLPANITEFGKTPLLTVAELAELG--VKRVSYGLTA 237 (289)
T ss_pred HHHHcCCcEEccccCC--------CHHHHHHHHHhcCCCeeeEeeccCCCCCcCHHHHHhcC--ceEEEECcHH
Confidence 9999999998755543 4688999998887554 4455655555677888888 8889988766
No 366
>PTZ00333 triosephosphate isomerase; Provisional
Probab=95.09 E-value=0.24 Score=45.92 Aligned_cols=149 Identities=15% Similarity=0.130 Sum_probs=84.1
Q ss_pred HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHhcC-ceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156 146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVVGK-QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF 222 (316)
Q Consensus 146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~G~-~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~ 222 (316)
....+.++||+.|+||=.-++. ++-|...-+++...... =..++++.--. .. +..+ . +.--+...++..
T Consensus 81 S~~mL~d~G~~~viiGHSERR~~f~Etd~~I~~Kv~~al~~gl~pIlCvGE~~-~~----~~~~-~--~~~~v~~Ql~~~ 152 (255)
T PTZ00333 81 SAEMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALENGLKVILCIGETL-EE----REAG-Q--TSDVLSKQLEAI 152 (255)
T ss_pred CHHHHHHcCCCEEEECcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEcCCCH-HH----HhCC-C--HHHHHHHHHHHH
Confidence 3788889999999999765543 33344444555444421 23455554210 00 0000 0 000011111111
Q ss_pred HHcCC-----CEE--EEeecCCccccCCCCHHHHH----HHhh----------cCCCcEEEEeCCCCHHHHHHHHHhCCC
Q 021156 223 LASYA-----DEF--LVHGVDVEGKKLGIDDELVA----LLGK----------YSPIPVTYAGGVTTMADLEKIKVAGIG 281 (316)
Q Consensus 223 ~~~Ga-----~~i--lvtdi~~dG~~~G~d~eli~----~l~~----------~~~iPVIasGGI~s~eDi~~l~~~G~g 281 (316)
.+ ++ ..+ -|-.+..-|+...++.+.++ .+++ ..++||+++|+|..-+...-+...+
T Consensus 153 l~-~v~~~~~~~iiIAYEPvWAIGtg~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~-- 229 (255)
T PTZ00333 153 VK-KVSDEAWDNIVIAYEPVWAIGTGKVATPEQAQEVHAFIRKWLAEKVGADVAEATRIIYGGSVNEKNCKELIKQPD-- 229 (255)
T ss_pred Hh-cCCHHHcceEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEcCCCCHHHHHHHhcCCC--
Confidence 11 22 233 35677888887766665443 2332 1258999999998876666555555
Q ss_pred cCEEEEccchhhccCcccHHHHHHHHHh
Q 021156 282 RVDVTVGSALDIFGGNLAYKDVVAWHAQ 309 (316)
Q Consensus 282 ~~gVivG~Al~~~~g~~~~~~~~~~~~~ 309 (316)
++|+.||+|. +. . .|.++++.+++
T Consensus 230 vDG~LvG~as--l~-~-~f~~Ii~~~~~ 253 (255)
T PTZ00333 230 IDGFLVGGAS--LK-P-DFVDIIKSAEQ 253 (255)
T ss_pred CCEEEEehHh--hh-h-hHHHHHHHHhh
Confidence 9999999999 76 4 68788776543
No 367
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=95.06 E-value=0.05 Score=49.54 Aligned_cols=35 Identities=29% Similarity=0.398 Sum_probs=32.1
Q ss_pred CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156 133 PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN 167 (316)
Q Consensus 133 ~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~ 167 (316)
...++|.|||+.+.+..+.++|||.+|+|+..++.
T Consensus 173 ~~~I~VdGGI~~~ti~~~~~aGad~iVvGsaI~~a 207 (228)
T PTZ00170 173 HLNIQVDGGINLETIDIAADAGANVIVAGSSIFKA 207 (228)
T ss_pred cCeEEECCCCCHHHHHHHHHcCCCEEEEchHHhCC
Confidence 36799999999999999999999999999998864
No 368
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.04 E-value=0.35 Score=46.45 Aligned_cols=96 Identities=18% Similarity=0.143 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCC--CEEEEeecCCccccCCCCHHHH
Q 021156 172 LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYA--DEFLVHGVDVEGKKLGIDDELV 249 (316)
Q Consensus 172 ~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga--~~ilvtdi~~dG~~~G~d~eli 249 (316)
+|....+.+..-+..+.+.+-+- ...+..+.+.++.+.|+ +.+ ..|.+. |.. -.=.+++
T Consensus 71 ~e~~~~~~r~~~~~~l~v~~~vg----------------~~~~~~~~~~~Lv~ag~~~d~i-~iD~a~-gh~-~~~~e~I 131 (326)
T PRK05458 71 PEARIPFIKDMHEQGLIASISVG----------------VKDDEYDFVDQLAAEGLTPEYI-TIDIAH-GHS-DSVINMI 131 (326)
T ss_pred HHHHHHHHHhccccccEEEEEec----------------CCHHHHHHHHHHHhcCCCCCEE-EEECCC-Cch-HHHHHHH
Confidence 77666666665444455554432 11235688899999965 854 455543 221 1124578
Q ss_pred HHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEc
Q 021156 250 ALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVG 288 (316)
Q Consensus 250 ~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG 288 (316)
+++++..+-+.+..|.+.|.+++..+.++| ++.+.+|
T Consensus 132 ~~ir~~~p~~~vi~g~V~t~e~a~~l~~aG--ad~i~vg 168 (326)
T PRK05458 132 QHIKKHLPETFVIAGNVGTPEAVRELENAG--ADATKVG 168 (326)
T ss_pred HHHHhhCCCCeEEEEecCCHHHHHHHHHcC--cCEEEEC
Confidence 888877653446667799999999999998 8988887
No 369
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=95.04 E-value=0.22 Score=48.12 Aligned_cols=150 Identities=17% Similarity=0.068 Sum_probs=79.7
Q ss_pred HHHHHHHHcCCCEEEe----CCeeecCCCCCHHHHHHHH---HHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHH
Q 021156 145 DNSLSYIEEGATHVIV----TSYVFNNGQMDLERLKDLV---RVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDE 217 (316)
Q Consensus 145 e~~~~~l~~Gad~VVi----gt~~~~~~~~~~eli~ei~---~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e 217 (316)
.+++.+++.||+-|.+ |+..... + .+.+.+++ ++||= -+++.+-.| ++ .+.... .-.+..+++.
T Consensus 150 ~sVedAlrLGAdAV~~tvy~Gs~~E~~--m-l~~l~~i~~ea~~~Gl-Plv~~~YpR--G~--~i~~~~-d~~~~~d~Ia 220 (348)
T PRK09250 150 ASVEDALRLGAVAVGATIYFGSEESRR--Q-IEEISEAFEEAHELGL-ATVLWSYLR--NS--AFKKDG-DYHTAADLTG 220 (348)
T ss_pred ecHHHHHHCCCCEEEEEEecCCHHHHH--H-HHHHHHHHHHHHHhCC-CEEEEeccc--Cc--ccCCcc-cccccHHHHH
Confidence 4699999999997654 4332211 1 22233333 33441 233333333 22 121111 0011122333
Q ss_pred -HHHHHHHcCCCEEEEeecC-Ccc------------ccCC----CCHHHHHHHhhcC---CCcEEEEeCCCC-HHH----
Q 021156 218 -RVLDFLASYADEFLVHGVD-VEG------------KKLG----IDDELVALLGKYS---PIPVTYAGGVTT-MAD---- 271 (316)
Q Consensus 218 -~a~~~~~~Ga~~ilvtdi~-~dG------------~~~G----~d~eli~~l~~~~---~iPVIasGGI~s-~eD---- 271 (316)
.++...++|++-+=+..-. .++ .+.+ ...+.++.+.+.+ ++||+.+||-+. .++
T Consensus 221 ~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~ 300 (348)
T PRK09250 221 QANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDA 300 (348)
T ss_pred HHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHH
Confidence 3577788999965321111 111 1112 2345667776666 899999999883 333
Q ss_pred HHHH---HHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156 272 LEKI---KVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ 309 (316)
Q Consensus 272 i~~l---~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~ 309 (316)
++.+ ++.| +.|+++||-+ |..+ .+|.++++++
T Consensus 301 v~~a~~~i~aG--a~Gv~iGRNI--fQ~~--~~ea~~~~~~ 335 (348)
T PRK09250 301 VRTAVINKRAG--GMGLIIGRKA--FQRP--MAEGVKLLNA 335 (348)
T ss_pred HHHHHHhhhcC--Ccchhhchhh--hcCC--cHHHHHHHHH
Confidence 3444 4545 8999999999 6554 4566776665
No 370
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=94.98 E-value=0.34 Score=47.06 Aligned_cols=139 Identities=12% Similarity=-0.031 Sum_probs=92.2
Q ss_pred HHHHHHHHcCCCEEEe--CCe--eecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHH
Q 021156 145 DNSLSYIEEGATHVIV--TSY--VFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVL 220 (316)
Q Consensus 145 e~~~~~l~~Gad~VVi--gt~--~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~ 220 (316)
+.++++.+.|.+.+=+ +.. ..+ +.+.++.+.+.+|+ .+.+.+|+. .+|.-. +..++++
T Consensus 149 ~~a~~~~~~Gf~~~Kik~~~~~~~~~----di~~i~~vR~~~G~-~~~l~vDan----------~~~~~~---~A~~~~~ 210 (368)
T cd03329 149 DFAEECKALGYRAIKLHPWGPGVVRR----DLKACLAVREAVGP-DMRLMHDGA----------HWYSRA---DALRLGR 210 (368)
T ss_pred HHHHHHHHcCCCEEEEecCCchhHHH----HHHHHHHHHHHhCC-CCeEEEECC----------CCcCHH---HHHHHHH
Confidence 3466777889886533 321 123 37899999999984 567788983 245421 3567777
Q ss_pred HHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCC-HHHHHHHHHhCCCcCEEEEccchhhccCccc
Q 021156 221 DFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTT-MADLEKIKVAGIGRVDVTVGSALDIFGGNLA 299 (316)
Q Consensus 221 ~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s-~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~ 299 (316)
.+.+.++..+ +.-....|++.++++++.+++||.+.--+.+ ++++.++.+.+ .++.+.+--.. .+|-..
T Consensus 211 ~l~~~~l~~i-------EeP~~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~-a~d~v~~d~~~--~GGit~ 280 (368)
T cd03329 211 ALEELGFFWY-------EDPLREASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAG-ATDFLRADVNL--VGGITG 280 (368)
T ss_pred HhhhcCCCeE-------eCCCCchhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhC-CCCEEecCccc--cCCHHH
Confidence 7877765532 1122334788889999989999877777888 99999999998 35555555444 455555
Q ss_pred HHHHHHHHHhhc
Q 021156 300 YKDVVAWHAQQE 311 (316)
Q Consensus 300 ~~~~~~~~~~~~ 311 (316)
..++.+++.++.
T Consensus 281 ~~~ia~~a~~~g 292 (368)
T cd03329 281 AMKTAHLAEAFG 292 (368)
T ss_pred HHHHHHHHHHcC
Confidence 566666655543
No 371
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=94.98 E-value=0.2 Score=46.85 Aligned_cols=66 Identities=17% Similarity=0.242 Sum_probs=48.7
Q ss_pred HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhc----CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchh
Q 021156 217 ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKY----SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALD 292 (316)
Q Consensus 217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~----~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~ 292 (316)
+.+.+..+.|++.+.+-.+. .+.++++.+. .++|+.++|||. .+.+.++.+.| ++++.+|+..
T Consensus 192 eea~~A~~~gaD~I~ld~~~---------~e~l~~~v~~i~~~~~i~i~asGGIt-~~ni~~~a~~G--ad~Isvgal~- 258 (269)
T cd01568 192 EEAEEALEAGADIIMLDNMS---------PEELKEAVKLLKGLPRVLLEASGGIT-LENIRAYAETG--VDVISTGALT- 258 (269)
T ss_pred HHHHHHHHcCCCEEEECCCC---------HHHHHHHHHHhccCCCeEEEEECCCC-HHHHHHHHHcC--CCEEEEcHHH-
Confidence 55667778899988763332 2445554433 378999999986 68899999998 9999998766
Q ss_pred hccC
Q 021156 293 IFGG 296 (316)
Q Consensus 293 ~~~g 296 (316)
|.-
T Consensus 259 -~s~ 261 (269)
T cd01568 259 -HSA 261 (269)
T ss_pred -cCC
Confidence 654
No 372
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=94.96 E-value=0.045 Score=50.90 Aligned_cols=72 Identities=17% Similarity=0.028 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCC---c-cc---HHHHHHHHHh-CCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCee
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGAD---P-LS---KAAAIEALHA-YPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYV 164 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~---~-~~---~~~i~~~v~~-~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~ 164 (316)
.|.+-.+...+..-..+|++-..+. . .. ....++.+++ .+.|+.+|=||+ .++++++. .|||-|||||++
T Consensus 151 t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~ 229 (259)
T PF00290_consen 151 TPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVGSAF 229 (259)
T ss_dssp S-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEESHHH
T ss_pred CCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH-ccCCEEEECHHH
Confidence 4556667766654455566655543 1 11 2334455553 679999999998 59999999 999999999998
Q ss_pred ec
Q 021156 165 FN 166 (316)
Q Consensus 165 ~~ 166 (316)
.+
T Consensus 230 v~ 231 (259)
T PF00290_consen 230 VK 231 (259)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 373
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=94.94 E-value=0.1 Score=49.34 Aligned_cols=92 Identities=20% Similarity=0.180 Sum_probs=67.0
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 215 LDERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
.-|.|+.+.+.|++.|++-.=-.-+.-..+ ..+.+.++.+.+ ++||..-|||++=.|+.+++.+| +.+|.|||-+
T Consensus 233 t~eDA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALG--Ak~VfiGRP~ 310 (363)
T KOG0538|consen 233 TGEDARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALG--AKGVFIGRPI 310 (363)
T ss_pred ccHHHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcc--cceEEecCch
Confidence 347888999999999987431111111233 677888887665 69999999999999999999999 8999999954
Q ss_pred hhc----cCcccHHHHHHHHHh
Q 021156 292 DIF----GGNLAYKDVVAWHAQ 309 (316)
Q Consensus 292 ~~~----~g~~~~~~~~~~~~~ 309 (316)
.| +|.=-.+++++.++.
T Consensus 311 -v~gLA~~Ge~GV~~vl~iL~~ 331 (363)
T KOG0538|consen 311 -VWGLAAKGEAGVKKVLDILRD 331 (363)
T ss_pred -heeeccccchhHHHHHHHHHH
Confidence 12 355556777665544
No 374
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=94.94 E-value=0.26 Score=47.20 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcC--CCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEc
Q 021156 215 LDERVLDFLASY--ADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVG 288 (316)
Q Consensus 215 ~~e~a~~~~~~G--a~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG 288 (316)
-.+.+..+.+.| ++. ++.|.. .|.. -.=++.++++++..+.|.+..|.+.+.++.+.+.+.| ++++.||
T Consensus 95 ~~~r~~~lv~a~~~~d~-i~~D~a-hg~s-~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aG--ad~I~V~ 165 (321)
T TIGR01306 95 EYEFVTQLAEEALTPEY-ITIDIA-HGHS-NSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAG--ADATKVG 165 (321)
T ss_pred HHHHHHHHHhcCCCCCE-EEEeCc-cCch-HHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcC--cCEEEEC
Confidence 457788888888 454 445543 2221 1235678888888888999999999999999999998 8999988
No 375
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=94.93 E-value=0.018 Score=51.49 Aligned_cols=36 Identities=31% Similarity=0.479 Sum_probs=30.8
Q ss_pred CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156 132 YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN 167 (316)
Q Consensus 132 ~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~ 167 (316)
.+..++|+|||+.+.+..+.++|||.+|+||+.+++
T Consensus 165 ~~~~I~vDGGI~~~~~~~~~~aGad~~V~Gs~iF~~ 200 (201)
T PF00834_consen 165 LDFEIEVDGGINEENIKQLVEAGADIFVAGSAIFKA 200 (201)
T ss_dssp CGSEEEEESSESTTTHHHHHHHT--EEEESHHHHTS
T ss_pred CceEEEEECCCCHHHHHHHHHcCCCEEEECHHHhCC
Confidence 458899999999999999999999999999988763
No 376
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=94.87 E-value=0.069 Score=50.64 Aligned_cols=90 Identities=22% Similarity=0.217 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHcCCCEEEE--eecCC------------ccccCCC-----CHHHHHHHhhc--CCCcEEEEeCCCCHHHH
Q 021156 214 YLDERVLDFLASYADEFLV--HGVDV------------EGKKLGI-----DDELVALLGKY--SPIPVTYAGGVTTMADL 272 (316)
Q Consensus 214 ~~~e~a~~~~~~Ga~~ilv--tdi~~------------dG~~~G~-----d~eli~~l~~~--~~iPVIasGGI~s~eDi 272 (316)
++.|++.-+.+...+.+|+ |-+++ -|-++|+ ..+.++.+-.. ..||||.+|||+|=.|.
T Consensus 267 el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA 346 (398)
T KOG1436|consen 267 ELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKDA 346 (398)
T ss_pred HHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCCCceEeecCccccHhH
Confidence 4667777788888888887 44555 2444565 34566666554 47999999999999999
Q ss_pred HHHHHhCCCcCEEEEccchhhccCcccHHHHHHH
Q 021156 273 EKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAW 306 (316)
Q Consensus 273 ~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~ 306 (316)
.+-.++| +.-|-+++|+ -|+|+-.++++++.
T Consensus 347 ~EkiraG--ASlvQlyTal-~yeGp~i~~kIk~E 377 (398)
T KOG1436|consen 347 YEKIRAG--ASLVQLYTAL-VYEGPAIIEKIKRE 377 (398)
T ss_pred HHHHhcC--chHHHHHHHH-hhcCchhHHHHHHH
Confidence 9999998 7888899998 78999878777664
No 377
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.87 E-value=0.14 Score=47.94 Aligned_cols=66 Identities=20% Similarity=0.182 Sum_probs=50.4
Q ss_pred HHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHh--C---CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156 96 AEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA--Y---PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 96 ~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~--~---~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~ 166 (316)
+|-|+...++|++ ++-||. .+.+.+.++++. . ++.+.+-|||+.+.+++|.+.|+|.+++|+....
T Consensus 192 leea~~A~~~GaD---iI~LDn--~~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~~ya~~GvD~IsvG~l~~s 262 (273)
T PRK05848 192 LEEAKNAMNAGAD---IVMCDN--MSVEEIKEVVAYRNANYPHVLLEASGNITLENINAYAKSGVDAISSGSLIHQ 262 (273)
T ss_pred HHHHHHHHHcCCC---EEEECC--CCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHHcCCCEEEeChhhcC
Confidence 3566666678887 556765 355666666653 2 4569999999889999999999999999998764
No 378
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=94.83 E-value=0.054 Score=52.68 Aligned_cols=75 Identities=20% Similarity=0.167 Sum_probs=55.3
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcCC--CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 215 LDERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYSP--IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~~--iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
..+.+....+.|++.|.+..-..-.--.|+ -.+.+.++.+.++ +||+++|||++-.|+.+++.+| ++.|.+|+.+
T Consensus 228 ~~~D~~~a~~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALG--A~~v~igrp~ 305 (360)
T COG1304 228 APEDAAGAGGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALG--ADAVGIGRPF 305 (360)
T ss_pred CHHHHHhhccCCceEEEEEcCCCccccCCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhC--CchhhhhHHH
Confidence 335566667777777765331111111344 6778888887765 8999999999999999999999 8999999977
No 379
>PRK08227 autoinducer 2 aldolase; Validated
Probab=94.79 E-value=0.32 Score=45.37 Aligned_cols=68 Identities=16% Similarity=0.019 Sum_probs=47.1
Q ss_pred HHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCC-HHHH----HHHHHhCCCcCEEEEccchh
Q 021156 218 RVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTT-MADL----EKIKVAGIGRVDVTVGSALD 292 (316)
Q Consensus 218 ~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s-~eDi----~~l~~~G~g~~gVivG~Al~ 292 (316)
.++...++|++-+= +.-. | +.++++.+.+++||+++||=+. .+++ +..++.| +.|+.+||-+|
T Consensus 163 aaRiaaELGADiVK-~~y~------~---~~f~~vv~a~~vPVviaGG~k~~~~~~L~~v~~ai~aG--a~Gv~~GRNIf 230 (264)
T PRK08227 163 ATRIAAEMGAQIIK-TYYV------E---EGFERITAGCPVPIVIAGGKKLPERDALEMCYQAIDEG--ASGVDMGRNIF 230 (264)
T ss_pred HHHHHHHHcCCEEe-cCCC------H---HHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcC--Cceeeechhhh
Confidence 46778899999653 2222 2 5677888888999999999884 2223 3344445 99999999995
Q ss_pred hccCc
Q 021156 293 IFGGN 297 (316)
Q Consensus 293 ~~~g~ 297 (316)
-++++
T Consensus 231 Q~~~p 235 (264)
T PRK08227 231 QSEHP 235 (264)
T ss_pred ccCCH
Confidence 55443
No 380
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=94.77 E-value=0.24 Score=45.57 Aligned_cols=132 Identities=17% Similarity=0.133 Sum_probs=77.3
Q ss_pred HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHhcC-ceEEEeeeeeecCCeeEEEeCCcceecccCHHHHH-HH
Q 021156 146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVVGK-QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERV-LD 221 (316)
Q Consensus 146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~G~-~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a-~~ 221 (316)
.++.+.++|++.|+||=.-++. ++-+...-+++...... =..++++.-.. . -+ ..+ ...+.+ .+
T Consensus 76 S~~mL~d~G~~~viiGHSERR~~f~Et~~~i~~Kv~~a~~~gl~pIvCiGE~~-~----~r------~~~-~~~~~~~~Q 143 (242)
T cd00311 76 SAEMLKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGETL-E----ER------EAG-KTEEVVAAQ 143 (242)
T ss_pred CHHHHHHcCCCEEEeCcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEeCCCH-H----HH------HcC-CHHHHHHHH
Confidence 4788889999999999765542 23334444444443311 23556664210 0 00 001 111222 22
Q ss_pred HHHc--C---CCEE--EEeecCCccccCCCCHH----HHHHHhh----c-----CCCcEEEEeCCCCHHHHHHHHHhCCC
Q 021156 222 FLAS--Y---ADEF--LVHGVDVEGKKLGIDDE----LVALLGK----Y-----SPIPVTYAGGVTTMADLEKIKVAGIG 281 (316)
Q Consensus 222 ~~~~--G---a~~i--lvtdi~~dG~~~G~d~e----li~~l~~----~-----~~iPVIasGGI~s~eDi~~l~~~G~g 281 (316)
+... + ...+ -|-.+..-||..-+..+ ..+.+++ . .++||+++|+|.. +++.++++.+ +
T Consensus 144 l~~~l~~~~~~~~~iIAYEPvWAIGtG~~as~~~~~ev~~~ir~~l~~~~~~~~~~~~IlYGGSV~~-~N~~~l~~~~-~ 221 (242)
T cd00311 144 LAAVLAGVEDLAPVVIAYEPVWAIGTGKTASPEQAQEVHAFIRKLLAELYGEVAEKVRILYGGSVNP-ENAAELLAQP-D 221 (242)
T ss_pred HHHHHhcchhhcCeEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcccccCceeEEECCCCCH-HHHHHHhcCC-C
Confidence 2111 1 1223 35677888887766544 2233332 1 2589999999999 9999999998 6
Q ss_pred cCEEEEccch
Q 021156 282 RVDVTVGSAL 291 (316)
Q Consensus 282 ~~gVivG~Al 291 (316)
++|+.||+|.
T Consensus 222 vDG~LVG~As 231 (242)
T cd00311 222 IDGVLVGGAS 231 (242)
T ss_pred CCEEEeehHh
Confidence 9999999999
No 381
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=94.77 E-value=3.8 Score=39.91 Aligned_cols=200 Identities=17% Similarity=0.077 Sum_probs=106.0
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEEecCCC--HHHHHHHHHcCCCEEEe--CCeeecC-
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGIN--SDNSLSYIEEGATHVIV--TSYVFNN- 167 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~vGGGIr--~e~~~~~l~~Gad~VVi--gt~~~~~- 167 (316)
.+-+++|+.+.+.|++.+-+-.--. .+...+.++.+.+...+..+.+-.| .++++++.++|++.|-+ .+.-...
T Consensus 22 ~~k~~ia~~L~~~Gv~~IEvG~p~~-~~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~ 100 (363)
T TIGR02090 22 EQKVEIARKLDELGVDVIEAGFPIA-SEGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCGVDSIHTFIATSPIHLK 100 (363)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCC-ChHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCcCEEEEEEcCCHHHHH
Confidence 4567899999999977655422111 1122223333333233344555556 58899999999998665 3211100
Q ss_pred ---CCCC---HHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc
Q 021156 168 ---GQMD---LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK 241 (316)
Q Consensus 168 ---~~~~---~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~ 241 (316)
++.. .+.+.+..+........+.+.+- ..+.. ..-.+.+.++.+.+.|+++|.+-| ..|.+
T Consensus 101 ~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e----------da~r~-~~~~l~~~~~~~~~~g~~~i~l~D--T~G~~ 167 (363)
T TIGR02090 101 YKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE----------DATRT-DIDFLIKVFKRAEEAGADRINIAD--TVGVL 167 (363)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe----------ecCCC-CHHHHHHHHHHHHhCCCCEEEEeC--CCCcc
Confidence 0000 22233333222111112222221 11111 112467788899999999886665 34666
Q ss_pred CCCCH-HHHHHHhhcCCCcEEEEeC----CCCHHHHHHHHHhCC-CcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156 242 LGIDD-ELVALLGKYSPIPVTYAGG----VTTMADLEKIKVAGI-GRVDVTVGSALDIFGGNLAYKDVVAWHAQ 309 (316)
Q Consensus 242 ~G~d~-eli~~l~~~~~iPVIasGG----I~s~eDi~~l~~~G~-g~~gVivG~Al~~~~g~~~~~~~~~~~~~ 309 (316)
..... ++++.+.+..++|+-+-+. .... -...+.+.|. -+++.+-|-+= -.|+.++++++..++.
T Consensus 168 ~P~~v~~li~~l~~~~~~~l~~H~Hnd~GlA~A-N~laA~~aGa~~vd~s~~GlGe--raGN~~lE~vv~~L~~ 238 (363)
T TIGR02090 168 TPQKMEELIKKLKENVKLPISVHCHNDFGLATA-NSIAGVKAGAEQVHVTVNGIGE--RAGNAALEEVVMALKY 238 (363)
T ss_pred CHHHHHHHHHHHhcccCceEEEEecCCCChHHH-HHHHHHHCCCCEEEEEeecccc--ccccccHHHHHHHHHH
Confidence 65544 4777787766677655443 2222 2334445673 24555555444 4477888888776654
No 382
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=94.75 E-value=0.13 Score=52.03 Aligned_cols=70 Identities=21% Similarity=0.205 Sum_probs=49.7
Q ss_pred HHHHHHHHcCCCcceEEE----------ecCC-cccHHHHHHHHH---hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeC
Q 021156 97 EFANLYKEDGLTGGHAIM----------LGAD-PLSKAAAIEALH---AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVT 161 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvD----------Lda~-~~~~~~i~~~v~---~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVig 161 (316)
+-|+.+.++|++.+.+=. +++. .+....+.++.+ ..++|++..|||+ ..|+.+++.+||+.|++|
T Consensus 281 e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 281 EAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLG 360 (486)
T ss_pred HHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEEC
Confidence 577888889998765411 1111 122334444433 3579999999998 599999999999999999
Q ss_pred Ceeec
Q 021156 162 SYVFN 166 (316)
Q Consensus 162 t~~~~ 166 (316)
+.+-.
T Consensus 361 ~~~a~ 365 (486)
T PRK05567 361 SMLAG 365 (486)
T ss_pred ccccc
Confidence 98755
No 383
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=94.73 E-value=0.066 Score=51.36 Aligned_cols=71 Identities=20% Similarity=0.149 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCCCcceEEEecCC-------------------------cccHHHHHHHHHhC-CCcEEEecCCCH-HHHH
Q 021156 96 AEFANLYKEDGLTGGHAIMLGAD-------------------------PLSKAAAIEALHAY-PGGLQVGGGINS-DNSL 148 (316)
Q Consensus 96 ~e~a~~~~~~G~~~l~lvDLda~-------------------------~~~~~~i~~~v~~~-~~pl~vGGGIr~-e~~~ 148 (316)
.+.|+.+.+.|++.+.+--..++ .+....+.++.+.+ ++||++.||||+ +|+.
T Consensus 192 ~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIiasGGIr~~~dv~ 271 (326)
T cd02811 192 RETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGIRNGLDIA 271 (326)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEECCCCCHHHHH
Confidence 47889999999886654211010 00112333333345 799999999995 9999
Q ss_pred HHHHcCCCEEEeCCeeec
Q 021156 149 SYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 149 ~~l~~Gad~VVigt~~~~ 166 (316)
+++..||+.|-+|+.++.
T Consensus 272 kal~lGAd~V~i~~~~L~ 289 (326)
T cd02811 272 KALALGADLVGMAGPFLK 289 (326)
T ss_pred HHHHhCCCEEEEcHHHHH
Confidence 999999999999997655
No 384
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.67 E-value=0.074 Score=53.71 Aligned_cols=71 Identities=15% Similarity=0.146 Sum_probs=51.6
Q ss_pred HHHHHHHHcCCCcceEEE---------ec--CCcccHHHHHHHHH---hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeC
Q 021156 97 EFANLYKEDGLTGGHAIM---------LG--ADPLSKAAAIEALH---AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVT 161 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvD---------Ld--a~~~~~~~i~~~v~---~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVig 161 (316)
+-|+.+.++|++.+.+=- .- .+.+....+.++.+ ..++|++..|||+ ..|+.+++.+||+.|++|
T Consensus 280 ~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g 359 (479)
T PRK07807 280 EGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIG 359 (479)
T ss_pred HHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeecc
Confidence 577888888988765210 00 01134444555554 4689999999998 699999999999999999
Q ss_pred CeeecC
Q 021156 162 SYVFNN 167 (316)
Q Consensus 162 t~~~~~ 167 (316)
+.+...
T Consensus 360 ~~~ag~ 365 (479)
T PRK07807 360 SWFAGT 365 (479)
T ss_pred HhhccC
Confidence 998764
No 385
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=94.64 E-value=0.09 Score=48.90 Aligned_cols=74 Identities=16% Similarity=0.024 Sum_probs=52.9
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCC---c-c---cHHHHHHHHHh-CCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCe
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGAD---P-L---SKAAAIEALHA-YPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSY 163 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~---~-~---~~~~i~~~v~~-~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~ 163 (316)
+.|.+..+...+..-..+|++-..+. . . .....++.+++ .+.|+.||=||+ .++++++.++ ||-||+||+
T Consensus 157 tt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSA 235 (265)
T COG0159 157 TTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVGSA 235 (265)
T ss_pred CCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEcHH
Confidence 45656667776654445566666543 1 1 12445555554 689999999999 5999999999 999999999
Q ss_pred eecC
Q 021156 164 VFNN 167 (316)
Q Consensus 164 ~~~~ 167 (316)
..+-
T Consensus 236 iV~~ 239 (265)
T COG0159 236 IVKI 239 (265)
T ss_pred HHHH
Confidence 8753
No 386
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=94.64 E-value=0.097 Score=44.65 Aligned_cols=33 Identities=33% Similarity=0.447 Sum_probs=29.9
Q ss_pred HhCCCcEEEecCCCH-HHHHHHHHcCCCEEEeCC
Q 021156 130 HAYPGGLQVGGGINS-DNSLSYIEEGATHVIVTS 162 (316)
Q Consensus 130 ~~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt 162 (316)
+..++|+.++|||+. +++.++++.|||.|++|+
T Consensus 167 ~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 167 RGSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred hcCCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 356799999999996 999999999999999986
No 387
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=94.55 E-value=0.25 Score=47.39 Aligned_cols=76 Identities=16% Similarity=0.047 Sum_probs=50.9
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCCc--c---c-HHHHHHHHH-hCCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCee
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGADP--L---S-KAAAIEALH-AYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYV 164 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~~--~---~-~~~i~~~v~-~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~ 164 (316)
+++. .|+...+.|+|.+.+-=-+++. . . ...+...++ .+++||+..|||.+ +++..++..||+-|.+||.+
T Consensus 144 ~s~~-~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrF 222 (330)
T PF03060_consen 144 TSVR-EARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGIAAALALGADGVQMGTRF 222 (330)
T ss_dssp SSHH-HHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHHHHHHHHCT-SEEEESHHH
T ss_pred CCHH-HHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHHHHHHHHcCCCEeecCCeE
Confidence 3565 5677888899987777666541 1 1 334444444 57899999999975 88999999999999999999
Q ss_pred ecCCC
Q 021156 165 FNNGQ 169 (316)
Q Consensus 165 ~~~~~ 169 (316)
.-..|
T Consensus 223 l~t~E 227 (330)
T PF03060_consen 223 LATEE 227 (330)
T ss_dssp HTSTT
T ss_pred Eeccc
Confidence 86643
No 388
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=94.54 E-value=0.035 Score=52.86 Aligned_cols=80 Identities=20% Similarity=0.256 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCC-----cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHc-CCCEEEeCCeeec
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGAD-----PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEE-GATHVIVTSYVFN 166 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~-----~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~-Gad~VVigt~~~~ 166 (316)
+.+++++.+.++|++.+.|===... ..+.+.+.++.+.+++|++.-|||. .+|+++.++. |||.|.+|..++.
T Consensus 139 ~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~ 218 (309)
T PF01207_consen 139 ETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALG 218 (309)
T ss_dssp HHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC
T ss_pred HHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhh
Confidence 4778999999999775443211111 2456666666667889999999998 5999999986 9999999999999
Q ss_pred CCCCCHHHHHH
Q 021156 167 NGQMDLERLKD 177 (316)
Q Consensus 167 ~~~~~~eli~e 177 (316)
| |.++.+
T Consensus 219 n----P~lf~~ 225 (309)
T PF01207_consen 219 N----PWLFRE 225 (309)
T ss_dssp -----CCHHCH
T ss_pred c----CHHhhh
Confidence 8 888875
No 389
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=94.53 E-value=0.41 Score=44.47 Aligned_cols=97 Identities=12% Similarity=0.033 Sum_probs=74.2
Q ss_pred CCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCE
Q 021156 205 DRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVD 284 (316)
Q Consensus 205 ~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~g 284 (316)
.||.. ...++.++++.+.+.|++.+-+ -.|..+.|-+++.++.+++.+++||+.--=|.++-++..+...| +++
T Consensus 63 ~g~i~-~~~~~~~~A~~~~~~GA~aisv---lte~~~f~g~~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~G--AD~ 136 (260)
T PRK00278 63 KGVIR-EDFDPVEIAKAYEAGGAACLSV---LTDERFFQGSLEYLRAARAAVSLPVLRKDFIIDPYQIYEARAAG--ADA 136 (260)
T ss_pred CCccC-CCCCHHHHHHHHHhCCCeEEEE---ecccccCCCCHHHHHHHHHhcCCCEEeeeecCCHHHHHHHHHcC--CCE
Confidence 46754 2347899999999999998732 23344555678999999998999999877788888999999998 898
Q ss_pred EEEccchhhccCcccHHHHHHHHHhh
Q 021156 285 VTVGSALDIFGGNLAYKDVVAWHAQQ 310 (316)
Q Consensus 285 VivG~Al~~~~g~~~~~~~~~~~~~~ 310 (316)
|.+.-+. +. +-+++++++.++..
T Consensus 137 VlLi~~~--l~-~~~l~~li~~a~~l 159 (260)
T PRK00278 137 ILLIVAA--LD-DEQLKELLDYAHSL 159 (260)
T ss_pred EEEEecc--CC-HHHHHHHHHHHHHc
Confidence 9888777 53 34677777666553
No 390
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=94.52 E-value=0.09 Score=50.94 Aligned_cols=71 Identities=20% Similarity=0.171 Sum_probs=48.9
Q ss_pred HHHHHHHHcCCCcceEEEecCC-----------cccHHHHHHHHH---hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeC
Q 021156 97 EFANLYKEDGLTGGHAIMLGAD-----------PLSKAAAIEALH---AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVT 161 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvDLda~-----------~~~~~~i~~~v~---~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVig 161 (316)
+.|+.+.++|++.+.+=-=.+. -+....+.++.+ ..++||+.+|||+ +-|+-++|.+|||.|.+|
T Consensus 161 e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG 240 (352)
T PF00478_consen 161 EGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLG 240 (352)
T ss_dssp HHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccceeec
Confidence 5888899999887655111111 122344555543 4789999999999 799999999999999999
Q ss_pred CeeecC
Q 021156 162 SYVFNN 167 (316)
Q Consensus 162 t~~~~~ 167 (316)
+.+-..
T Consensus 241 ~llAgt 246 (352)
T PF00478_consen 241 SLLAGT 246 (352)
T ss_dssp TTTTTB
T ss_pred hhhccC
Confidence 987543
No 391
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=94.43 E-value=0.077 Score=51.91 Aligned_cols=70 Identities=17% Similarity=0.148 Sum_probs=52.4
Q ss_pred HHHHHHHHcCCCcceEEEecCC-----------cccHHHHHHHH---HhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeC
Q 021156 97 EFANLYKEDGLTGGHAIMLGAD-----------PLSKAAAIEAL---HAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVT 161 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvDLda~-----------~~~~~~i~~~v---~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVig 161 (316)
+.|+.+-++|+|++++=.=.+. .+.-..+.+.+ +..++|++.+|||+ ..++-++|.+||+.|.+|
T Consensus 304 ~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviADGGiq~~Ghi~KAl~lGAstVMmG 383 (503)
T KOG2550|consen 304 EQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQFGVPCIADGGIQNVGHVVKALGLGASTVMMG 383 (503)
T ss_pred HHHHHHHHccCceeEeccccCceeeeceeeeccCCcccchhhHHHHHHhcCCceeecCCcCccchhHhhhhcCchhheec
Confidence 6788888999999988554332 12223344443 45789999999998 699999999999999999
Q ss_pred Ceeec
Q 021156 162 SYVFN 166 (316)
Q Consensus 162 t~~~~ 166 (316)
+.+-.
T Consensus 384 ~lLAg 388 (503)
T KOG2550|consen 384 GLLAG 388 (503)
T ss_pred ceeee
Confidence 87643
No 392
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=94.42 E-value=0.14 Score=49.05 Aligned_cols=70 Identities=21% Similarity=0.270 Sum_probs=49.8
Q ss_pred HHHHHHHHcCCCcceEEEecC------------CcccHHHHHHH---HHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEe
Q 021156 97 EFANLYKEDGLTGGHAIMLGA------------DPLSKAAAIEA---LHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIV 160 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvDLda------------~~~~~~~i~~~---v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVi 160 (316)
+.|+...++|++.+.+- +.. ..+....+.++ ++..++|++..|||+ ..++.+++.+||+.|.+
T Consensus 147 ~~A~~l~~aGaD~I~vg-~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 147 EAARDLIDAGADGVKVG-IGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred HHHHHHHhcCCCEEEEC-CCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 57888888999976541 110 01222233333 334579999999998 59999999999999999
Q ss_pred CCeeecC
Q 021156 161 TSYVFNN 167 (316)
Q Consensus 161 gt~~~~~ 167 (316)
||.+...
T Consensus 226 Gt~fa~t 232 (325)
T cd00381 226 GSLLAGT 232 (325)
T ss_pred cchhccc
Confidence 9998764
No 393
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=94.27 E-value=0.68 Score=45.25 Aligned_cols=118 Identities=16% Similarity=0.126 Sum_probs=78.4
Q ss_pred cCHHHHHHHHH-HcCCCcceEEEecCCcc----c---HHH-HHHHHHhCCCcEEEecC---CC-HHHHHHHHHcCCC-EE
Q 021156 93 KSAAEFANLYK-EDGLTGGHAIMLGADPL----S---KAA-AIEALHAYPGGLQVGGG---IN-SDNSLSYIEEGAT-HV 158 (316)
Q Consensus 93 ~~p~e~a~~~~-~~G~~~l~lvDLda~~~----~---~~~-i~~~v~~~~~pl~vGGG---Ir-~e~~~~~l~~Gad-~V 158 (316)
+||.++++... ..|++.+.|-..++++. . -.. +.+...++++|++++|= -. .+-+++.++.-.. +.
T Consensus 139 ~dP~~wak~~V~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kp 218 (389)
T TIGR00381 139 EDPAEWARKCVKEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEGERC 218 (389)
T ss_pred cCHHHHHHHHHHHhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCc
Confidence 46778888775 57899888888776532 1 112 23333468899999876 33 3557888876444 89
Q ss_pred EeCCeeec-CCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCC--EEEE
Q 021156 159 IVTSYVFN-NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYAD--EFLV 232 (316)
Q Consensus 159 Vigt~~~~-~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~--~ilv 232 (316)
+|+++..+ | .+.+.+++.+||..-++-+.|-. + ...++.+.+.+.|+. .|++
T Consensus 219 LL~SAt~e~N----y~~ia~lAk~yg~~Vvv~s~~Di---n---------------~ak~Ln~kL~~~Gv~~eDIVl 273 (389)
T TIGR00381 219 LLASANLDLD----YEKIANAAKKYGHVVLSWTIMDI---N---------------MQKTLNRYLLKRGLMPRDIVM 273 (389)
T ss_pred EEEecCchhh----HHHHHHHHHHhCCeEEEEcCCcH---H---------------HHHHHHHHHHHcCCCHHHEEE
Confidence 99999988 6 88999999999742222231211 1 244566677888988 7654
No 394
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.23 E-value=0.24 Score=43.70 Aligned_cols=71 Identities=15% Similarity=0.216 Sum_probs=52.2
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCCcc-cHHHHHHHHHhC-CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGADPL-SKAAAIEALHAY-PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~-~~~~i~~~v~~~-~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~ 166 (316)
.+|.|+.+.+ +.|++.+.++- +... ....+.++.... ++|+..=|||+.+++..++++||+.|.++|..++
T Consensus 113 ~t~~e~~~A~-~~Gadyv~~Fp--t~~~~G~~~l~~~~~~~~~ipvvaiGGI~~~n~~~~l~aGa~~vav~s~i~~ 185 (187)
T PRK07455 113 LTPTEIVTAW-QAGASCVKVFP--VQAVGGADYIKSLQGPLGHIPLIPTGGVTLENAQAFIQAGAIAVGLSGQLFP 185 (187)
T ss_pred CCHHHHHHHH-HCCCCEEEECc--CCcccCHHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHHCCCeEEEEehhccc
Confidence 4688776655 47899888732 2211 233344444445 5999999999999999999999999999998775
No 395
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=94.22 E-value=0.084 Score=51.45 Aligned_cols=86 Identities=17% Similarity=0.163 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHcC-CCcceEEEecCC--c-cc-H-----HHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcC-CCEEEe
Q 021156 94 SAAEFANLYKEDG-LTGGHAIMLGAD--P-LS-K-----AAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEG-ATHVIV 160 (316)
Q Consensus 94 ~p~e~a~~~~~~G-~~~l~lvDLda~--~-~~-~-----~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~G-ad~VVi 160 (316)
+..++++.+.+.| ++.+|+.--+-. . .. . ....+.++ .+.+|+++-|+|+ .++++..++.| ||.|.+
T Consensus 238 e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~ 317 (363)
T COG1902 238 EAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGRADLVAM 317 (363)
T ss_pred HHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCEEEe
Confidence 5678999999999 687777765431 1 11 1 01222233 4679999999998 59999999998 999999
Q ss_pred CCeeecCCCCCHHHHHHHHHHhc
Q 021156 161 TSYVFNNGQMDLERLKDLVRVVG 183 (316)
Q Consensus 161 gt~~~~~~~~~~eli~ei~~~~G 183 (316)
|..++.| |+++.++.+..+
T Consensus 318 gR~~lad----P~~~~k~~~g~~ 336 (363)
T COG1902 318 GRPFLAD----PDLVLKAAEGRE 336 (363)
T ss_pred chhhhcC----ccHHHHHHcCCC
Confidence 9999998 999999988664
No 396
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=94.20 E-value=1.9 Score=43.36 Aligned_cols=154 Identities=16% Similarity=0.135 Sum_probs=95.8
Q ss_pred HHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCee
Q 021156 122 KAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKY 200 (316)
Q Consensus 122 ~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~ 200 (316)
...+.+..+..++-..| -++ .+++++++++|++.+-|++.-+.+-+++++...++...++++.++++-
T Consensus 148 l~~l~~~a~~lGl~~lv--Evh~~~El~~al~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip~~~~~vse--------- 216 (454)
T PRK09427 148 YRQLAAVAHSLNMGVLT--EVSNEEELERAIALGAKVIGINNRNLRDLSIDLNRTRELAPLIPADVIVISE--------- 216 (454)
T ss_pred HHHHHHHHHHcCCcEEE--EECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEEEe---------
Confidence 34455555566654444 356 488999999999999999887776667889999998887544333332
Q ss_pred EEEeCCcceecccCHHHHHHHHHHcCCCEEEE-eecCCccccCCCCH-HHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHh
Q 021156 201 AIVTDRWQKFSDVYLDERVLDFLASYADEFLV-HGVDVEGKKLGIDD-ELVALLGKYSPIPVTYAGGVTTMADLEKIKVA 278 (316)
Q Consensus 201 ~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilv-tdi~~dG~~~G~d~-eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~ 278 (316)
+++...+.++.+.+ |++.+++ +.+ |+-+|. +.++++.. ..|=. .|+++.+|+..+.++
T Consensus 217 ----------SGI~t~~d~~~~~~-~~davLiG~~l-----m~~~d~~~~~~~L~~---~~vKI-CGit~~eda~~a~~~ 276 (454)
T PRK09427 217 ----------SGIYTHAQVRELSP-FANGFLIGSSL-----MAEDDLELAVRKLIL---GENKV-CGLTRPQDAKAAYDA 276 (454)
T ss_pred ----------CCCCCHHHHHHHHh-cCCEEEECHHH-----cCCCCHHHHHHHHhc---ccccc-CCCCCHHHHHHHHhC
Confidence 12222344555654 7999987 332 223443 34555532 12222 469999999999999
Q ss_pred CCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156 279 GIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ 309 (316)
Q Consensus 279 G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~ 309 (316)
|.+.-|.+.-. - -.+.++++++.++.+.
T Consensus 277 GaD~lGfIf~~-~--SpR~V~~~~a~~i~~~ 304 (454)
T PRK09427 277 GAVYGGLIFVE-K--SPRYVSLEQAQEIIAA 304 (454)
T ss_pred CCCEEeeEeCC-C--CCCCCCHHHHHHHHHh
Confidence 95444444210 0 1234778887776654
No 397
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=94.10 E-value=0.3 Score=43.30 Aligned_cols=49 Identities=22% Similarity=0.280 Sum_probs=38.1
Q ss_pred CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156 133 PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVV 182 (316)
Q Consensus 133 ~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~ 182 (316)
+.-++|+||+..+.+.+..++||+.+|.||+.+..+.. -+.+..+.+.+
T Consensus 169 ~l~ievDGGv~~~ti~~~a~AGAN~iVaGsavf~a~d~-~~vi~~lr~~v 217 (224)
T KOG3111|consen 169 NLDIEVDGGVGPSTIDKAAEAGANMIVAGSAVFGAADP-SDVISLLRNSV 217 (224)
T ss_pred CceEEecCCcCcchHHHHHHcCCCEEEecceeecCCCH-HHHHHHHHHHH
Confidence 46789999999999999999999999999999975321 24555554443
No 398
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=94.04 E-value=0.47 Score=42.56 Aligned_cols=71 Identities=17% Similarity=0.166 Sum_probs=51.8
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhC--CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAY--PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~--~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~ 166 (316)
.+|.|+.+.+ +.|++.+.++- +.......+.+..... ++|+..=|||+.+++..++++|++.|.++|..++
T Consensus 112 ~t~~E~~~A~-~~Gad~vk~Fp--a~~~G~~~l~~l~~~~~~~ipvvaiGGI~~~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 112 ATPTEAFAAL-RAGAQALKLFP--ASQLGPAGIKALRAVLPPDVPVFAVGGVTPENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred CCHHHHHHHH-HcCCCEEEECC--CCCCCHHHHHHHHhhcCCCCeEEEECCCCHHHHHHHHHCCCeEEEEehHhcc
Confidence 4677765544 57888777532 2223334444444445 4999999999999999999999999999999876
No 399
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=94.01 E-value=5.1 Score=37.12 Aligned_cols=194 Identities=13% Similarity=0.063 Sum_probs=115.0
Q ss_pred ecCCccCHHHHHHHHHHcCCCcceEEEec-CC------c---ccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCC
Q 021156 88 NFESDKSAAEFANLYKEDGLTGGHAIMLG-AD------P---LSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGAT 156 (316)
Q Consensus 88 ~~~~~~~p~e~a~~~~~~G~~~l~lvDLd-a~------~---~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad 156 (316)
..++..--.++|+...+.|+..+.=--.+ .+ + .....+.+.+++.++|+.. =+- .++++.+.+ .+|
T Consensus 24 ~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~T--ev~d~~~v~~~~e-~vd 100 (250)
T PRK13397 24 SIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVS--EIMSERQLEEAYD-YLD 100 (250)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEE--eeCCHHHHHHHHh-cCC
Confidence 34434456678888777775322211111 11 0 1244555666678888776 344 477888877 699
Q ss_pred EEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC
Q 021156 157 HVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD 236 (316)
Q Consensus 157 ~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~ 236 (316)
.+=||+....| .++++++.+. | + .+-+| .|. .. +-.+....++.+.+.|...+++..+.
T Consensus 101 ilqIgs~~~~n----~~LL~~va~t-g--k---PVilk--~G~-------~~--t~~e~~~A~e~i~~~Gn~~i~L~eRg 159 (250)
T PRK13397 101 VIQVGARNMQN----FEFLKTLSHI-D--K---PILFK--RGL-------MA--TIEEYLGALSYLQDTGKSNIILCERG 159 (250)
T ss_pred EEEECcccccC----HHHHHHHHcc-C--C---eEEEe--CCC-------CC--CHHHHHHHHHHHHHcCCCeEEEEccc
Confidence 99999999987 9999888753 2 1 12222 221 11 11134455677778898777654332
Q ss_pred CccccC----CCCHHHHHHHhhcCCCcEEEE----eCCCCH--HHHHHHHHhCCCcCEEEEcc------chhhccCc--c
Q 021156 237 VEGKKL----GIDDELVALLGKYSPIPVTYA----GGVTTM--ADLEKIKVAGIGRVDVTVGS------ALDIFGGN--L 298 (316)
Q Consensus 237 ~dG~~~----G~d~eli~~l~~~~~iPVIas----GGI~s~--eDi~~l~~~G~g~~gVivG~------Al~~~~g~--~ 298 (316)
--+.-. -.|+..+..+++..+.||++. +|.+.. .-.......| ++|++|-+ |+ ..++ +
T Consensus 160 ~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~SHs~G~r~~v~~~a~AAvA~G--AdGl~IE~H~~P~~A~--sD~~q~l 235 (250)
T PRK13397 160 VRGYDVETRNMLDIMAVPIIQQKTDLPIIVDVSHSTGRRDLLLPAAKIAKAVG--ANGIMMEVHPDPDHAL--SDAAQQI 235 (250)
T ss_pred cCCCCCccccccCHHHHHHHHHHhCCCeEECCCCCCcccchHHHHHHHHHHhC--CCEEEEEecCCccccc--CchhhhC
Confidence 222221 347777888888788999884 555442 2234444556 99999874 55 3333 7
Q ss_pred cHHHHHHHHHh
Q 021156 299 AYKDVVAWHAQ 309 (316)
Q Consensus 299 ~~~~~~~~~~~ 309 (316)
+++++.+++.+
T Consensus 236 ~~~~l~~l~~~ 246 (250)
T PRK13397 236 DYKQLEQLGQE 246 (250)
T ss_pred CHHHHHHHHHH
Confidence 77777766654
No 400
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=94.00 E-value=1.5 Score=38.39 Aligned_cols=105 Identities=16% Similarity=0.006 Sum_probs=66.4
Q ss_pred HHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHH
Q 021156 98 FANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKD 177 (316)
Q Consensus 98 ~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~e 177 (316)
-+....+.|++.+|. +.....+.+..+..+.++++|.- +.+++.++.++|||.+-+...... .++.++.
T Consensus 68 ~~~~a~~~Ga~~i~~------p~~~~~~~~~~~~~~~~~i~gv~-t~~e~~~A~~~Gad~i~~~p~~~~----g~~~~~~ 136 (190)
T cd00452 68 QADAAIAAGAQFIVS------PGLDPEVVKAANRAGIPLLPGVA-TPTEIMQALELGADIVKLFPAEAV----GPAYIKA 136 (190)
T ss_pred HHHHHHHcCCCEEEc------CCCCHHHHHHHHHcCCcEECCcC-CHHHHHHHHHCCCCEEEEcCCccc----CHHHHHH
Confidence 334455567776652 22345566777777888887333 469999999999999987432222 3888888
Q ss_pred HHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEee
Q 021156 178 LVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHG 234 (316)
Q Consensus 178 i~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd 234 (316)
+.+.++ ..-++++ +| ++ .+-+.++.+.|++.+.+.+
T Consensus 137 l~~~~~-~~p~~a~-----GG--------------I~-~~n~~~~~~~G~~~v~v~s 172 (190)
T cd00452 137 LKGPFP-QVRFMPT-----GG--------------VS-LDNAAEWLAAGVVAVGGGS 172 (190)
T ss_pred HHhhCC-CCeEEEe-----CC--------------CC-HHHHHHHHHCCCEEEEEch
Confidence 877663 2111111 22 32 3677788899999876543
No 401
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.97 E-value=0.13 Score=52.34 Aligned_cols=69 Identities=20% Similarity=0.136 Sum_probs=47.1
Q ss_pred HHHHHHHHcCCCcceEEEecCC------------cccHHHHHHHHHh-------CC--CcEEEecCCC-HHHHHHHHHcC
Q 021156 97 EFANLYKEDGLTGGHAIMLGAD------------PLSKAAAIEALHA-------YP--GGLQVGGGIN-SDNSLSYIEEG 154 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvDLda~------------~~~~~~i~~~v~~-------~~--~pl~vGGGIr-~e~~~~~l~~G 154 (316)
+-|+.+.++|++.+.+ =..++ .+....+.++.++ .+ +|++.+|||| ..|+-+++.+|
T Consensus 296 e~a~~li~aGAd~I~v-g~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~G 374 (502)
T PRK07107 296 EGFRYLAEAGADFVKV-GIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMG 374 (502)
T ss_pred HHHHHHHHcCCCEEEE-CCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcC
Confidence 3666666778887665 11111 1223334444432 24 8999999999 69999999999
Q ss_pred CCEEEeCCeeec
Q 021156 155 ATHVIVTSYVFN 166 (316)
Q Consensus 155 ad~VVigt~~~~ 166 (316)
||.|.+|+.+-.
T Consensus 375 A~~vm~G~~~ag 386 (502)
T PRK07107 375 ADFIMLGRYFAR 386 (502)
T ss_pred CCeeeeChhhhc
Confidence 999999997654
No 402
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=93.97 E-value=0.93 Score=43.82 Aligned_cols=139 Identities=13% Similarity=0.095 Sum_probs=91.5
Q ss_pred HHHHHHHHcCCCEE--EeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156 145 DNSLSYIEEGATHV--IVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF 222 (316)
Q Consensus 145 e~~~~~l~~Gad~V--Vigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~ 222 (316)
++++++.+.|...+ =+|.....| .+.++.+.+.+|+ .+-+.+|+. .+|... +..++++.+
T Consensus 144 ~~a~~~~~~Gf~~~Kikvg~~~~~d----~~~v~~vRe~~G~-~~~l~vDaN----------~~~~~~---~A~~~~~~l 205 (352)
T cd03328 144 EQLSGWVAQGIPRVKMKIGRDPRRD----PDRVAAARRAIGP-DAELFVDAN----------GAYSRK---QALALARAF 205 (352)
T ss_pred HHHHHHHHCCCCEEEeecCCCHHHH----HHHHHHHHHHcCC-CCeEEEECC----------CCCCHH---HHHHHHHHH
Confidence 34677778887743 346432333 7899999999985 567889973 246432 366788888
Q ss_pred HHcCCCEEEEeecCCccccCCCCHHHHHHHhhc--CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccH
Q 021156 223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKY--SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAY 300 (316)
Q Consensus 223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~--~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~ 300 (316)
++.++..+ +.=...-|++.++++++. +++||.+.=-+.+..|+.++.+.+ .++-+.+--+- .+|-...
T Consensus 206 ~~~~~~~~-------EeP~~~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~-a~div~~d~~~--~GGit~~ 275 (352)
T cd03328 206 ADEGVTWF-------EEPVSSDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAH-AVDVLQADVTR--CGGVTGF 275 (352)
T ss_pred HHhCcchh-------hCCCChhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcC-CCCEEecCccc--cCCHHHH
Confidence 87766422 111222378899999998 789988766678999999999987 25544444333 4454445
Q ss_pred HHHHHHHHhhc
Q 021156 301 KDVVAWHAQQE 311 (316)
Q Consensus 301 ~~~~~~~~~~~ 311 (316)
.++.+++.++.
T Consensus 276 ~~ia~~A~a~g 286 (352)
T cd03328 276 LQAAALAAAHH 286 (352)
T ss_pred HHHHHHHHHcC
Confidence 66666655543
No 403
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=93.92 E-value=0.22 Score=44.87 Aligned_cols=76 Identities=21% Similarity=0.140 Sum_probs=51.2
Q ss_pred ccCHHHHHHHHHHcCCCcceE---EEecCCcccH-HHHHHHHHh---CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCee
Q 021156 92 DKSAAEFANLYKEDGLTGGHA---IMLGADPLSK-AAAIEALHA---YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYV 164 (316)
Q Consensus 92 ~~~p~e~a~~~~~~G~~~l~l---vDLda~~~~~-~~i~~~v~~---~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~ 164 (316)
..+|.+.++.+.+.|.+-+.+ +|..+....+ ...++.+++ .+.++-|.|||+.+++..+...|++.+|+|.+.
T Consensus 116 ~~~~~~~~~~l~~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI~~~~i~~~~~~~~~ivIvGraI 195 (217)
T COG0269 116 VWDPEQRAKWLKELGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGITPEDIPLFKGIGADIVIVGRAI 195 (217)
T ss_pred CCCHHHHHHHHHHhCCCEEEEEecccHhhcCCCccHHHHHHHHHhhccCceEEEecCCCHHHHHHHhcCCCCEEEECchh
Confidence 357988888777777552221 2222222222 233333332 347999999999999999999999999999987
Q ss_pred ecC
Q 021156 165 FNN 167 (316)
Q Consensus 165 ~~~ 167 (316)
.+.
T Consensus 196 t~a 198 (217)
T COG0269 196 TGA 198 (217)
T ss_pred cCC
Confidence 654
No 404
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.91 E-value=0.55 Score=44.12 Aligned_cols=68 Identities=15% Similarity=0.153 Sum_probs=50.5
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhh----c---CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEE
Q 021156 215 LDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGK----Y---SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTV 287 (316)
Q Consensus 215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~----~---~~iPVIasGGI~s~eDi~~l~~~G~g~~gViv 287 (316)
..+.+.++.+.|++.|.+-..+ .+.++++.+ . .++.+.+|||| +.+.+.++.+.| +|.+.+
T Consensus 191 ~leea~~a~~agaDiI~LDn~~---------~e~l~~~v~~l~~~~~~~~~~leaSGGI-~~~ni~~yA~tG--vD~Is~ 258 (278)
T PRK08385 191 SLEDALKAAKAGADIIMLDNMT---------PEEIREVIEALKREGLRERVKIEVSGGI-TPENIEEYAKLD--VDVISL 258 (278)
T ss_pred CHHHHHHHHHcCcCEEEECCCC---------HHHHHHHHHHHHhcCcCCCEEEEEECCC-CHHHHHHHHHcC--CCEEEe
Confidence 3577888899999977654443 334444332 1 35789999999 889999999998 999999
Q ss_pred ccchhhccC
Q 021156 288 GSALDIFGG 296 (316)
Q Consensus 288 G~Al~~~~g 296 (316)
|+.. |..
T Consensus 259 galt--~sa 265 (278)
T PRK08385 259 GALT--HSV 265 (278)
T ss_pred Chhh--cCC
Confidence 9877 643
No 405
>PRK07695 transcriptional regulator TenI; Provisional
Probab=93.86 E-value=0.34 Score=42.85 Aligned_cols=72 Identities=17% Similarity=0.106 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHcCCCcceE--EEecCCc-----ccHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156 94 SAAEFANLYKEDGLTGGHA--IMLGADP-----LSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~l--vDLda~~-----~~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~ 166 (316)
++. .++...+.|++.+.+ +.-+... .....+.+..+.+++|+.+-|||+.+++..+++.|++.|.+++....
T Consensus 104 s~e-~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI~~~~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 104 SLE-EAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGITPENTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred CHH-HHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHcCCCEEEEEHHHhc
Confidence 444 566677788886521 1111111 12334444445578999999999889999999999999999999875
No 406
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.83 E-value=0.23 Score=46.59 Aligned_cols=66 Identities=21% Similarity=0.203 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhC--CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156 96 AEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAY--PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 96 ~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~--~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~ 166 (316)
++.++...++|++. +-||. ...+.+.++++.. .+|+.+-|||+.+.+..+.++|+|.+.+|+..+.
T Consensus 199 leea~eA~~~gaD~---I~LD~--~~~e~l~~~v~~~~~~i~leAsGGIt~~ni~~~a~tGvD~Isvg~lt~s 266 (277)
T PRK05742 199 LDELRQALAAGADI---VMLDE--LSLDDMREAVRLTAGRAKLEASGGINESTLRVIAETGVDYISIGAMTKD 266 (277)
T ss_pred HHHHHHHHHcCCCE---EEECC--CCHHHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHcCCCEEEEChhhcC
Confidence 34555566778774 45553 3445566666543 6899999999999999999999999999997765
No 407
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=93.81 E-value=0.19 Score=48.22 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCCCcceEEEecCC-----cccHHHHHHHHHhCC-CcEEEecCCC-HHHHHHHHH-cCCCEEEeCCeeec
Q 021156 95 AAEFANLYKEDGLTGGHAIMLGAD-----PLSKAAAIEALHAYP-GGLQVGGGIN-SDNSLSYIE-EGATHVIVTSYVFN 166 (316)
Q Consensus 95 p~e~a~~~~~~G~~~l~lvDLda~-----~~~~~~i~~~v~~~~-~pl~vGGGIr-~e~~~~~l~-~Gad~VVigt~~~~ 166 (316)
..++++..++.|++.++|==-.+. +.+.+.+.+..+.++ +|++.-|+|. .+++++.++ .|||.|.+|-..+.
T Consensus 154 ~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~ 233 (323)
T COG0042 154 ALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALG 233 (323)
T ss_pred HHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHcc
Confidence 667999999988776554222111 235666666555677 9999999998 599999888 57999999999999
Q ss_pred CCCCCHHHHHHH
Q 021156 167 NGQMDLERLKDL 178 (316)
Q Consensus 167 ~~~~~~eli~ei 178 (316)
| |.++.++
T Consensus 234 n----P~l~~~i 241 (323)
T COG0042 234 N----PWLFRQI 241 (323)
T ss_pred C----CcHHHHH
Confidence 8 9999888
No 408
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=93.78 E-value=0.54 Score=41.67 Aligned_cols=157 Identities=18% Similarity=0.181 Sum_probs=82.7
Q ss_pred cCCC-HHHHHHHHHcCCCEEEeCCeeecC-C-CCCHHHHHHHHHHhcCceEEEeeeeeec--------CCeeEEEeCCcc
Q 021156 140 GGIN-SDNSLSYIEEGATHVIVTSYVFNN-G-QMDLERLKDLVRVVGKQRLVLDLSCRKK--------DGKYAIVTDRWQ 208 (316)
Q Consensus 140 GGIr-~e~~~~~l~~Gad~VVigt~~~~~-~-~~~~eli~ei~~~~G~~~IvvslD~k~~--------~g~~~v~~~gw~ 208 (316)
.|++ .+|+..+.++|+|.+=+ .+..+ + .++++.++++.+...+..+.+..|-... -+--.|..+|-.
T Consensus 4 CGi~~~~da~~~~~~g~d~~Gf--i~~~~S~R~v~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e 81 (197)
T PF00697_consen 4 CGITRPEDARLAAELGADYLGF--IFYPKSPRYVSPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE 81 (197)
T ss_dssp E---SHHHHHHHHHHTSSEEEE--E--TTCTTB--HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG
T ss_pred CCCCcHHHHHHHHHcCCCEEee--ecCCCCCCccCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC
Confidence 4776 69999999999998644 33333 3 3578899999877754444444432100 000134444432
Q ss_pred eecccCHHHHHHHHH----------------------HcC-CCEEEEeecCCccccCCCCHHHHHHHhh-cCCCcEEEEe
Q 021156 209 KFSDVYLDERVLDFL----------------------ASY-ADEFLVHGVDVEGKKLGIDDELVALLGK-YSPIPVTYAG 264 (316)
Q Consensus 209 ~~~~~~~~e~a~~~~----------------------~~G-a~~ilvtdi~~dG~~~G~d~eli~~l~~-~~~iPVIasG 264 (316)
..+.+..+. ... ++.+| .|-...|+...+||++++.+.+ ..+.|++.+|
T Consensus 82 ------~~e~~~~l~~~~~vi~~~~v~~~~~~~~~~~~~~~~d~~L-lD~~~GgtG~~~dw~~~~~~~~~~~~~p~iLAG 154 (197)
T PF00697_consen 82 ------SPEYIKLLRAGLPVIKAIHVDKDIDLLDYLERYESVDYFL-LDSGSGGTGKTFDWSLLKKIVESYSPKPVILAG 154 (197)
T ss_dssp -------HHHHHHHHTTSEEEEEEEESSCHSCCHHCHCSTT-SEEE-EESSSTSSSS---GGGGCCCHHT-GTSTEEEES
T ss_pred ------CHHHHHHhhcCceEEEEEEeCCccchHHHHHhcccccEEe-EccCCCcCCcccCHHHhhhhhhhcccCcEEEEc
Confidence 223333332 111 24444 4423345667789999998876 3478999999
Q ss_pred CCCCHHHHHHHHH-hCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156 265 GVTTMADLEKIKV-AGIGRVDVTVGSALDIFGGNLAYKDVVAWHA 308 (316)
Q Consensus 265 GI~s~eDi~~l~~-~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~ 308 (316)
|+.- +.+.++.+ .. ..||=+.+++=.-.|.=+++.+.++++
T Consensus 155 Gl~p-~NV~~ai~~~~--p~gvDvsSGvE~~pG~KD~~ki~~fv~ 196 (197)
T PF00697_consen 155 GLNP-ENVREAIRQVR--PYGVDVSSGVETSPGVKDPEKIKAFVE 196 (197)
T ss_dssp S--T-TTHHHHHHHC----SEEEESGGGEEETTEE-HHHHHHHHH
T ss_pred CCCh-HHHHHHHHhcC--ceEEEeCCccccCCCCCCHHHHHHHHh
Confidence 9976 46666666 45 888999998811114456666666654
No 409
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=93.76 E-value=0.74 Score=41.50 Aligned_cols=117 Identities=21% Similarity=0.205 Sum_probs=67.1
Q ss_pred HHHHHHHHcCCCEE--EeCCeeecCCCC--CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHH
Q 021156 145 DNSLSYIEEGATHV--IVTSYVFNNGQM--DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVL 220 (316)
Q Consensus 145 e~~~~~l~~Gad~V--Vigt~~~~~~~~--~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~ 220 (316)
.+++.+++.|||-| +++-..+.++.. ..+.+.++.+..+ . +-+| .+.-.+... +-.....++
T Consensus 74 ~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~-g-----~~lK------vIlE~~~L~--~~ei~~a~~ 139 (211)
T TIGR00126 74 YETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACA-G-----VLLK------VIIETGLLT--DEEIRKACE 139 (211)
T ss_pred HHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcC-C-----CeEE------EEEecCCCC--HHHHHHHHH
Confidence 56888999999963 444433333321 1234555555442 1 1111 111112111 113456678
Q ss_pred HHHHcCCCEEEEeecCCcccc-CCCCHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhC
Q 021156 221 DFLASYADEFLVHGVDVEGKK-LGIDDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAG 279 (316)
Q Consensus 221 ~~~~~Ga~~ilvtdi~~dG~~-~G~d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G 279 (316)
...+.|++.+= |+ .|.. .|...+-++.+++.. .+||-++|||++.+++.+++++|
T Consensus 140 ia~eaGADfvK-Ts---TGf~~~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aG 197 (211)
T TIGR00126 140 ICIDAGADFVK-TS---TGFGAGGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAG 197 (211)
T ss_pred HHHHhCCCEEE-eC---CCCCCCCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHh
Confidence 88899999652 22 2332 344444444443332 68999999999999999999998
No 410
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=93.76 E-value=0.13 Score=50.52 Aligned_cols=72 Identities=17% Similarity=0.112 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCC-----cccHHHHHHHHHhC--CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeee
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGAD-----PLSKAAAIEALHAY--PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVF 165 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~-----~~~~~~i~~~v~~~--~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~ 165 (316)
++ +-|+...+.|++.+.+-.-.+. .+....+.++.+.+ .+||+++||||. .|+-+++..||+.|.+|+.++
T Consensus 263 ~~-~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l 341 (383)
T cd03332 263 HP-DDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYA 341 (383)
T ss_pred CH-HHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 44 4666777889887555432221 12233344444444 489999999995 999999999999999999877
Q ss_pred c
Q 021156 166 N 166 (316)
Q Consensus 166 ~ 166 (316)
.
T Consensus 342 ~ 342 (383)
T cd03332 342 Y 342 (383)
T ss_pred H
Confidence 3
No 411
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=93.64 E-value=0.56 Score=44.08 Aligned_cols=76 Identities=14% Similarity=0.088 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhh-cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhh
Q 021156 215 LDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGK-YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDI 293 (316)
Q Consensus 215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~-~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~ 293 (316)
..+.++++.+.|++.+.++..+.+- -.+.++.+++ ..++.+.++|||. ++.+.++.+.| ++.+++|.-.
T Consensus 197 tleea~ea~~~GaDiI~lDn~~~e~-----l~~~v~~l~~~~~~~~leasGGI~-~~ni~~ya~~G--vD~is~gal~-- 266 (277)
T TIGR01334 197 TIEQALTVLQASPDILQLDKFTPQQ-----LHHLHERLKFFDHIPTLAAAGGIN-PENIADYIEAG--IDLFITSAPY-- 266 (277)
T ss_pred CHHHHHHHHHcCcCEEEECCCCHHH-----HHHHHHHHhccCCCEEEEEECCCC-HHHHHHHHhcC--CCEEEeCcce--
Confidence 3578889999999999877443220 1123333332 2467799999985 58899999988 8888888765
Q ss_pred ccCcccH
Q 021156 294 FGGNLAY 300 (316)
Q Consensus 294 ~~g~~~~ 300 (316)
|..+.++
T Consensus 267 ~a~~~Di 273 (277)
T TIGR01334 267 YAAPCDI 273 (277)
T ss_pred ecCccce
Confidence 6665543
No 412
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=93.64 E-value=1.5 Score=42.37 Aligned_cols=140 Identities=14% Similarity=0.141 Sum_probs=89.9
Q ss_pred HHHHHHHHcC-CCEEE--eCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156 145 DNSLSYIEEG-ATHVI--VTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD 221 (316)
Q Consensus 145 e~~~~~l~~G-ad~VV--igt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~ 221 (316)
+.+.++++.| ...+= +|...... +.+.++.+.+.+|+ .+.+.+|+. + +|... ...++++.
T Consensus 148 ~~~~~~~~~G~f~~~KiKvg~~~~~~---d~~~v~avr~~~g~-~~~l~iDaN---~-------~~~~~---~A~~~~~~ 210 (365)
T cd03318 148 AEAEEMLEAGRHRRFKLKMGARPPAD---DLAHVEAIAKALGD-RASVRVDVN---Q-------AWDES---TAIRALPR 210 (365)
T ss_pred HHHHHHHhCCCceEEEEEeCCCChHH---HHHHHHHHHHHcCC-CcEEEEECC---C-------CCCHH---HHHHHHHH
Confidence 3466777888 76543 45422221 37889999999974 567889983 2 45432 35677778
Q ss_pred HHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHH
Q 021156 222 FLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYK 301 (316)
Q Consensus 222 ~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~ 301 (316)
+.+.++..+ . .=..-.|++.++++++.+++||.+.=-+.+.+|+.++.+.+ .++.+.+--.. .+|--...
T Consensus 211 l~~~~~~~i-----E--eP~~~~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~-~~d~~~~d~~~--~GGit~~~ 280 (365)
T cd03318 211 LEAAGVELI-----E--QPVPRENLDGLARLRSRNRVPIMADESVSGPADAFELARRG-AADVFSLKIAK--SGGLRRAQ 280 (365)
T ss_pred HHhcCccee-----e--CCCCcccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhC-CCCeEEEeecc--cCCHHHHH
Confidence 877775422 1 11112268889999988899977665577899999999987 35656655444 45555566
Q ss_pred HHHHHHHhhc
Q 021156 302 DVVAWHAQQE 311 (316)
Q Consensus 302 ~~~~~~~~~~ 311 (316)
++.++++++.
T Consensus 281 ~~~~~a~~~g 290 (365)
T cd03318 281 KVAAIAEAAG 290 (365)
T ss_pred HHHHHHHHcC
Confidence 6666655543
No 413
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=93.57 E-value=1.8 Score=39.83 Aligned_cols=153 Identities=15% Similarity=0.134 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCC---------cccHHHHHHHH----HhCC-CcEEEec-----CC--CH-HHHHHHH
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGAD---------PLSKAAAIEAL----HAYP-GGLQVGG-----GI--NS-DNSLSYI 151 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~---------~~~~~~i~~~v----~~~~-~pl~vGG-----GI--r~-e~~~~~l 151 (316)
|+. .|+..+++|++.+.+-|--.. ....+++...+ +.++ .|++++. +- .. +.++++.
T Consensus 21 D~~-sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~ 99 (240)
T cd06556 21 DYS-MAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFM 99 (240)
T ss_pred CHH-HHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHH
Confidence 676 788888899998777764321 12333443333 3344 6887753 22 12 4488999
Q ss_pred HcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeec----CCeeEEEeCCcceecccCHHHHHHHHHHcCC
Q 021156 152 EEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKK----DGKYAIVTDRWQKFSDVYLDERVLDFLASYA 227 (316)
Q Consensus 152 ~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~----~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga 227 (316)
++||+-|-|--.... .+.++.+.+. + =-|+.=+|..-. .|.|++.... ...-...++.++.+++.|+
T Consensus 100 ~aGa~gv~iED~~~~-----~~~i~ai~~a-~-i~ViaRtd~~pq~~~~~gg~~~~~~~--~~~~~~ai~Ra~ay~~AGA 170 (240)
T cd06556 100 RAGAAGVKIEGGEWH-----IETLQMLTAA-A-VPVIAHTGLTPQSVNTSGGDEGQYRG--DEAGEQLIADALAYAPAGA 170 (240)
T ss_pred HcCCcEEEEcCcHHH-----HHHHHHHHHc-C-CeEEEEeCCchhhhhccCCceeeccC--HHHHHHHHHHHHHHHHcCC
Confidence 999998877221111 3344444432 1 123333443100 0101121111 1111246788999999999
Q ss_pred CEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeC
Q 021156 228 DEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGG 265 (316)
Q Consensus 228 ~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGG 265 (316)
+.+++..+ +.+.++++.+.+++|++..|.
T Consensus 171 d~i~~e~~---------~~e~~~~i~~~~~~P~~~~ga 199 (240)
T cd06556 171 DLIVMECV---------PVELAKQITEALAIPLAGIGA 199 (240)
T ss_pred CEEEEcCC---------CHHHHHHHHHhCCCCEEEEec
Confidence 99887432 578999999999999988764
No 414
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=93.57 E-value=0.12 Score=51.74 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=34.3
Q ss_pred HHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecC
Q 021156 129 LHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNN 167 (316)
Q Consensus 129 v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~ 167 (316)
++..++|++..|||+ ..|+.+++.+||+.|.+|+.+-..
T Consensus 323 ~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~ 362 (450)
T TIGR01302 323 AAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGT 362 (450)
T ss_pred HhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcC
Confidence 344689999999999 699999999999999999987653
No 415
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=93.54 E-value=0.25 Score=46.25 Aligned_cols=46 Identities=20% Similarity=0.206 Sum_probs=37.9
Q ss_pred cHHHHHHHHHhCCCcEE--EecCCC-HHHHHHHHHcCCCEEEeCCeeec
Q 021156 121 SKAAAIEALHAYPGGLQ--VGGGIN-SDNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 121 ~~~~i~~~v~~~~~pl~--vGGGIr-~e~~~~~l~~Gad~VVigt~~~~ 166 (316)
..+.+.++.+...+|+. .-|||. .+++..+++.||+.|++||+...
T Consensus 182 d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~ 230 (283)
T cd04727 182 PYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 230 (283)
T ss_pred CHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhc
Confidence 34445555556789997 999995 79999999999999999999975
No 416
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.54 E-value=2.1 Score=41.50 Aligned_cols=134 Identities=16% Similarity=0.217 Sum_probs=90.2
Q ss_pred HHHHHHHHHcCCCEEEeCCe---eecCC-CCCHHHHHHHH---HHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHH
Q 021156 144 SDNSLSYIEEGATHVIVTSY---VFNNG-QMDLERLKDLV---RVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLD 216 (316)
Q Consensus 144 ~e~~~~~l~~Gad~VVigt~---~~~~~-~~~~eli~ei~---~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~ 216 (316)
.++++.+++.|||.|-+|-. .+... .+..+-+++.+ ..+| .++.+.+..-..++ .. -.+.
T Consensus 16 l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~g-kk~~V~~N~~~~~~-------~~-----~~~~ 82 (347)
T COG0826 16 LEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAG-KKVYVAVNTLLHND-------EL-----ETLE 82 (347)
T ss_pred HHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcC-CeEEEEeccccccc-------hh-----hHHH
Confidence 58899999999999999954 11111 23334444444 4455 45666665421111 00 1256
Q ss_pred HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhh-cCCCcEEEE--eCCCCHHHHHHHHHhCCCcCEEEEccchhh
Q 021156 217 ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGK-YSPIPVTYA--GGVTTMADLEKIKVAGIGRVDVTVGSALDI 293 (316)
Q Consensus 217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~-~~~iPVIas--GGI~s~eDi~~l~~~G~g~~gVivG~Al~~ 293 (316)
+..+.+.+.|++.+++-|.. ++.-+++ ..++|+.+| --+.+.+.+.-+.++| +..+++.+-+
T Consensus 83 ~~l~~l~e~GvDaviv~Dpg-----------~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G--~~rvVl~rEl-- 147 (347)
T COG0826 83 RYLDRLVELGVDAVIVADPG-----------LIMLARERGPDLPIHVSTQANVTNAETAKFWKELG--AKRVVLPREL-- 147 (347)
T ss_pred HHHHHHHHcCCCEEEEcCHH-----------HHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcC--CEEEEeCccC--
Confidence 78899999999999977653 4445544 356888766 5789999999999998 8888888777
Q ss_pred ccCcccHHHHHHHHHhh
Q 021156 294 FGGNLAYKDVVAWHAQQ 310 (316)
Q Consensus 294 ~~g~~~~~~~~~~~~~~ 310 (316)
++.++.+..++-
T Consensus 148 -----s~~ei~~i~~~~ 159 (347)
T COG0826 148 -----SLEEIKEIKEQT 159 (347)
T ss_pred -----CHHHHHHHHHhC
Confidence 677777766553
No 417
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=93.53 E-value=4.8 Score=37.94 Aligned_cols=153 Identities=13% Similarity=0.135 Sum_probs=97.4
Q ss_pred HHHHhCCCcEE--EecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe
Q 021156 127 EALHAYPGGLQ--VGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT 204 (316)
Q Consensus 127 ~~v~~~~~pl~--vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~ 204 (316)
..++..++|+. .+=|-..+++.+.++.|...|.++-..+.- +-|....+++++..- +.-+|+-. .+-+
T Consensus 69 ~~a~~~~vPV~lHlDHg~~~~~~~~ai~~GFsSvMiDgS~~~~-eENi~~tkevv~~ah--~~gvsVEa-------ElG~ 138 (286)
T COG0191 69 ALAEKYGVPVALHLDHGASFEDCKQAIRAGFSSVMIDGSHLPF-EENIAITKEVVEFAH--AYGVSVEA-------ELGT 138 (286)
T ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHhcCCceEEecCCcCCH-HHHHHHHHHHHHHHH--HcCCcEEE-------Eecc
Confidence 33445667654 456666799999999999999997665431 112556666665442 22244543 2223
Q ss_pred CCccee--------ccc-CHHHHHHHHHHcCCCEEEEeecCCccccCC----CCHHHHHHHhhcCCCcEEEEeCCCC-HH
Q 021156 205 DRWQKF--------SDV-YLDERVLDFLASYADEFLVHGVDVEGKKLG----IDDELVALLGKYSPIPVTYAGGVTT-MA 270 (316)
Q Consensus 205 ~gw~~~--------~~~-~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G----~d~eli~~l~~~~~iPVIasGGI~s-~e 270 (316)
-|+.+. ..+ ++.+.......-|++.+-+.-=+.-|.+.+ .|++.++++.+.+++|+..-||=+. .+
T Consensus 139 ~GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~~~PlVlHGgSGip~~ 218 (286)
T COG0191 139 LGGEEDGVVLYTDPADLTDPEEALEFVERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAVSLPLVLHGGSGIPDE 218 (286)
T ss_pred ccCccCCcccccchhhhCCHHHHHHHHhccCcceeeeeccccccCCCCCCCCCCHHHHHHHHHHhCCCEEEeCCCCCCHH
Confidence 333321 112 454444445555688875433244466553 4999999999999999999888654 56
Q ss_pred HHHHHHHhCCCcCEEEEccch
Q 021156 271 DLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 271 Di~~l~~~G~g~~gVivG~Al 291 (316)
++++..+.| +..+=|.+=+
T Consensus 219 eI~~aI~~G--V~KvNi~Td~ 237 (286)
T COG0191 219 EIREAIKLG--VAKVNIDTDL 237 (286)
T ss_pred HHHHHHHhC--ceEEeeCcHH
Confidence 799999998 8888888633
No 418
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=93.50 E-value=0.084 Score=49.67 Aligned_cols=85 Identities=21% Similarity=0.243 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcCCCcceE---------EEecCCc-------------ccHHHHHHHH----HhCC--CcEEEecCCC-HH
Q 021156 95 AAEFANLYKEDGLTGGHA---------IMLGADP-------------LSKAAAIEAL----HAYP--GGLQVGGGIN-SD 145 (316)
Q Consensus 95 p~e~a~~~~~~G~~~l~l---------vDLda~~-------------~~~~~i~~~v----~~~~--~pl~vGGGIr-~e 145 (316)
+.+.+....+.|++++.+ +|++... ...+...+.+ +.++ +||+..|||. .+
T Consensus 178 ~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~ 257 (295)
T PF01180_consen 178 PFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIHSGE 257 (295)
T ss_dssp HHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--SHH
T ss_pred HHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcCCHH
Confidence 455666666778888772 3444320 1223333332 3466 9999999998 59
Q ss_pred HHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156 146 NSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVV 182 (316)
Q Consensus 146 ~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~ 182 (316)
|+.+++.+||+.|-++|++..+ .|..+.++.+..
T Consensus 258 da~e~l~aGA~~Vqv~Sal~~~---Gp~~~~~i~~~L 291 (295)
T PF01180_consen 258 DAIEFLMAGASAVQVCSALIYR---GPGVIRRINREL 291 (295)
T ss_dssp HHHHHHHHTESEEEESHHHHHH---GTTHHHHHHHHH
T ss_pred HHHHHHHhCCCHheechhhhhc---CcHHHHHHHHHH
Confidence 9999999999999999999443 288888887654
No 419
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=93.46 E-value=0.28 Score=45.78 Aligned_cols=68 Identities=25% Similarity=0.281 Sum_probs=47.7
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhC----CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAY----PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~----~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~ 166 (316)
.++.++.+. .++|++ ++-||.- ....+.+.++.. ++|+.+-|||+.+.+..+.++|+|.+++|+..+.
T Consensus 189 ~t~eea~~A-~~~gaD---~I~ld~~--~~e~l~~~v~~i~~~~~i~i~asGGIt~~ni~~~a~~Gad~Isvgal~~s 260 (269)
T cd01568 189 ETLEEAEEA-LEAGAD---IIMLDNM--SPEELKEAVKLLKGLPRVLLEASGGITLENIRAYAETGVDVISTGALTHS 260 (269)
T ss_pred CCHHHHHHH-HHcCCC---EEEECCC--CHHHHHHHHHHhccCCCeEEEEECCCCHHHHHHHHHcCCCEEEEcHHHcC
Confidence 367655444 456665 4455542 234444444433 6899999999999999999999999999876655
No 420
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=93.45 E-value=0.27 Score=46.28 Aligned_cols=46 Identities=22% Similarity=0.208 Sum_probs=37.9
Q ss_pred cHHHHHHHHHhCCCcEE--EecCCC-HHHHHHHHHcCCCEEEeCCeeec
Q 021156 121 SKAAAIEALHAYPGGLQ--VGGGIN-SDNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 121 ~~~~i~~~v~~~~~pl~--vGGGIr-~e~~~~~l~~Gad~VVigt~~~~ 166 (316)
..+.+.++.+...+|+. .-|||. .+++..++++||+.|++||+.++
T Consensus 191 ~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~k 239 (293)
T PRK04180 191 PYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFK 239 (293)
T ss_pred CHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence 34445555556789998 999995 79999999999999999999974
No 421
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=93.43 E-value=0.18 Score=48.99 Aligned_cols=72 Identities=21% Similarity=0.120 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCC-----cccHHHHHHHHHhC--CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeee
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGAD-----PLSKAAAIEALHAY--PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVF 165 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~-----~~~~~~i~~~v~~~--~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~ 165 (316)
+|. -|+...+.|++++.+-.-.+. ......+.++..++ .+||++.||||. .|+-+++..||+.|-+|-.++
T Consensus 235 ~~~-da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l 313 (356)
T PF01070_consen 235 SPE-DAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFL 313 (356)
T ss_dssp SHH-HHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHH
T ss_pred cHH-HHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHH
Confidence 454 667788889886555433222 23334444444433 599999999996 999999999999999997765
Q ss_pred c
Q 021156 166 N 166 (316)
Q Consensus 166 ~ 166 (316)
.
T Consensus 314 ~ 314 (356)
T PF01070_consen 314 Y 314 (356)
T ss_dssp H
T ss_pred H
Confidence 4
No 422
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=93.41 E-value=0.16 Score=49.35 Aligned_cols=72 Identities=17% Similarity=0.127 Sum_probs=50.3
Q ss_pred HHHHHHHHHcCCCcceEEEecCCc-----------------------ccHHHHHHHHHh-CCCcEEEecCCCH-HHHHHH
Q 021156 96 AEFANLYKEDGLTGGHAIMLGADP-----------------------LSKAAAIEALHA-YPGGLQVGGGINS-DNSLSY 150 (316)
Q Consensus 96 ~e~a~~~~~~G~~~l~lvDLda~~-----------------------~~~~~i~~~v~~-~~~pl~vGGGIr~-e~~~~~ 150 (316)
.+.|+.+.++|++.+.+---.++. +....+.++.+. .++|++..|||++ .|+.++
T Consensus 200 ~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~~~~dv~k~ 279 (352)
T PRK05437 200 KETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIRNGLDIAKA 279 (352)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHH
Confidence 478899999998865552111100 011133333344 4799999999995 999999
Q ss_pred HHcCCCEEEeCCeeecC
Q 021156 151 IEEGATHVIVTSYVFNN 167 (316)
Q Consensus 151 l~~Gad~VVigt~~~~~ 167 (316)
+..||+.|-+|+.++..
T Consensus 280 l~~GAd~v~ig~~~l~~ 296 (352)
T PRK05437 280 LALGADAVGMAGPFLKA 296 (352)
T ss_pred HHcCCCEEEEhHHHHHH
Confidence 99999999999987753
No 423
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=93.39 E-value=6 Score=35.95 Aligned_cols=197 Identities=20% Similarity=0.224 Sum_probs=111.1
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCC--c------ccHHHHHHHHHhCCCcEEEecCCC--HHHHHHHHHcCCCEEEeCC
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGAD--P------LSKAAAIEALHAYPGGLQVGGGIN--SDNSLSYIEEGATHVIVTS 162 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~--~------~~~~~i~~~v~~~~~pl~vGGGIr--~e~~~~~l~~Gad~VVigt 162 (316)
..-.++++.+.+.|++ .+.+... . .....+++.+++..-++.+..=.+ .++++++.++|++.|-+..
T Consensus 19 e~~~~i~~~L~~~GV~---~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~~~i~i~~ 95 (265)
T cd03174 19 EDKLEIAEALDEAGVD---SIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAGVDEVRIFD 95 (265)
T ss_pred HHHHHHHHHHHHcCCC---EEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCcCEEEEEE
Confidence 3455778888877765 4444422 1 234444555543221233333333 5789999999999876644
Q ss_pred eeec--------CC-CCCHHHHHHHH---HHhcCceEEEee-eeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCE
Q 021156 163 YVFN--------NG-QMDLERLKDLV---RVVGKQRLVLDL-SCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADE 229 (316)
Q Consensus 163 ~~~~--------~~-~~~~eli~ei~---~~~G~~~Ivvsl-D~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ 229 (316)
..-+ .+ +-..+.+.+.. +..| -.+.+++ ++- +- ....-.+.++++.+.+.|++.
T Consensus 96 ~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G-~~v~~~~~~~~-----------~~-~~~~~~l~~~~~~~~~~g~~~ 162 (265)
T cd03174 96 SASETHSRKNLNKSREEDLENAEEAIEAAKEAG-LEVEGSLEDAF-----------GC-KTDPEYVLEVAKALEEAGADE 162 (265)
T ss_pred ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC-CeEEEEEEeec-----------CC-CCCHHHHHHHHHHHHHcCCCE
Confidence 3321 00 00123333333 2333 2233333 221 10 011124678899999999998
Q ss_pred EEEeecCCccccCCCCH-HHHHHHhhcCC-CcEEEEe----CCCCHHHHHHHHHhCC-CcCEEEEccchhhccCcccHHH
Q 021156 230 FLVHGVDVEGKKLGIDD-ELVALLGKYSP-IPVTYAG----GVTTMADLEKIKVAGI-GRVDVTVGSALDIFGGNLAYKD 302 (316)
Q Consensus 230 ilvtdi~~dG~~~G~d~-eli~~l~~~~~-iPVIasG----GI~s~eDi~~l~~~G~-g~~gVivG~Al~~~~g~~~~~~ 302 (316)
+.+-|. .|.+...++ ++++.+++..+ +|+-+-+ |.....-+..+ +.|. -+++-+-|-+= -.|+.+.++
T Consensus 163 i~l~Dt--~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~-~aG~~~id~s~~G~G~--~~Gn~~~e~ 237 (265)
T cd03174 163 ISLKDT--VGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAAL-EAGADRVDGSVNGLGE--RAGNAATED 237 (265)
T ss_pred EEechh--cCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHH-HcCCCEEEeccccccc--cccCccHHH
Confidence 865553 576665554 47788877665 8888877 66655544444 5673 24555555554 568899999
Q ss_pred HHHHHHhh
Q 021156 303 VVAWHAQQ 310 (316)
Q Consensus 303 ~~~~~~~~ 310 (316)
++.+++..
T Consensus 238 ~~~~l~~~ 245 (265)
T cd03174 238 LVAALEGL 245 (265)
T ss_pred HHHHHHhc
Confidence 98877764
No 424
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=93.38 E-value=3.7 Score=38.14 Aligned_cols=200 Identities=16% Similarity=0.073 Sum_probs=105.2
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEEecCCC--HHHHHHHHHcCCCEEEeCCee---ecC
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGIN--SDNSLSYIEEGATHVIVTSYV---FNN 167 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~vGGGIr--~e~~~~~l~~Gad~VVigt~~---~~~ 167 (316)
.+-+++++.+.+.|++.+-+-.= +..+......+.+.....+..+-+-.| .++++++.++|++.|-+-... +..
T Consensus 22 ~~k~~i~~~L~~~Gv~~IEvG~P-~~~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~S~~~~~ 100 (262)
T cd07948 22 EDKIEIAKALDAFGVDYIELTSP-AASPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETGVDGVDLVFGTSPFLRE 100 (262)
T ss_pred HHHHHHHHHHHHcCCCEEEEECC-CCCHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcCcCEEEEEEecCHHHHH
Confidence 45568999999999776555431 111111122233332222122232234 589999999999987663211 000
Q ss_pred ---CCC---CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc
Q 021156 168 ---GQM---DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK 241 (316)
Q Consensus 168 ---~~~---~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~ 241 (316)
++- ..+.+.++.+......+.+.+..- ..+... .-.+.++++.+.+.|++++.+-| ..|.+
T Consensus 101 ~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e----------da~r~~-~~~l~~~~~~~~~~g~~~i~l~D--t~G~~ 167 (262)
T cd07948 101 ASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE----------DSFRSD-LVDLLRVYRAVDKLGVNRVGIAD--TVGIA 167 (262)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE----------eeCCCC-HHHHHHHHHHHHHcCCCEEEECC--cCCCC
Confidence 100 123333333333111122333221 111111 11367888999999999875544 55776
Q ss_pred CCCCH-HHHHHHhhcCCCcEEEEe----CCCCHHHHHHHHHhCC-CcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156 242 LGIDD-ELVALLGKYSPIPVTYAG----GVTTMADLEKIKVAGI-GRVDVTVGSALDIFGGNLAYKDVVAWHAQ 309 (316)
Q Consensus 242 ~G~d~-eli~~l~~~~~iPVIasG----GI~s~eDi~~l~~~G~-g~~gVivG~Al~~~~g~~~~~~~~~~~~~ 309 (316)
...+. ++++.+++..++|+-+-+ |.....- ..+.+.|. -+++.+-|-+- -.|+.++++++..++.
T Consensus 168 ~P~~v~~~~~~~~~~~~~~i~~H~Hn~~Gla~an~-~~a~~aG~~~vd~s~~GlGe--raGn~~~e~~~~~l~~ 238 (262)
T cd07948 168 TPRQVYELVRTLRGVVSCDIEFHGHNDTGCAIANA-YAALEAGATHIDTTVLGIGE--RNGITPLGGLIARMYT 238 (262)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHHH-HHHHHhCCCEEEEecccccc--ccCCccHHHHHHHHHh
Confidence 66654 477888877777775554 2333333 33445673 14445555444 4577888888876643
No 425
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.37 E-value=0.41 Score=45.24 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-----hCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-----AYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-----~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~ 166 (316)
+..++ ....++|++ ++-||. ...+.+.++++ .-.+|+.+-|||+.+.+..|...|+|.+++|+....
T Consensus 205 tleea-~eA~~~GaD---~I~LDn--~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya~tGvD~Isvgsl~~s 276 (288)
T PRK07428 205 TLEQV-QEALEYGAD---IIMLDN--MPVDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVAETGVDYISSSAPITR 276 (288)
T ss_pred CHHHH-HHHHHcCCC---EEEECC--CCHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEchhhhC
Confidence 45544 444467776 666663 23344545443 246899999999999999999999999999998765
No 426
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=93.36 E-value=2.9 Score=40.54 Aligned_cols=153 Identities=12% Similarity=0.111 Sum_probs=91.7
Q ss_pred HhCCCc--EEEecCCC--HHHHHHHHHcC-----------CCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeee
Q 021156 130 HAYPGG--LQVGGGIN--SDNSLSYIEEG-----------ATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCR 194 (316)
Q Consensus 130 ~~~~~p--l~vGGGIr--~e~~~~~l~~G-----------ad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k 194 (316)
++..+| |-.+=|-. .+.+++++++| ++.|.++...+.- +=|.++.+++++...+ .-+++-.-
T Consensus 89 ~~~~VPValHLDHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpf-EeNI~~TkevVe~Ah~--~GvsVEaE 165 (350)
T PRK09197 89 EHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPL-EENIEICSKYLERMAK--AGMTLEIE 165 (350)
T ss_pred HHCCCCEEEECCCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCCCCH-HHHHHHHHHHHHHHHH--cCCEEEEE
Confidence 334444 44555555 45666666666 9999997655421 0025566665544321 11334321
Q ss_pred ecCCeeEEEe--CC----cc-e-ecccCHHHHHHHHHHcCC----CEEEEeecCCccccC-C---CCHHHHHHHhhcC--
Q 021156 195 KKDGKYAIVT--DR----WQ-K-FSDVYLDERVLDFLASYA----DEFLVHGVDVEGKKL-G---IDDELVALLGKYS-- 256 (316)
Q Consensus 195 ~~~g~~~v~~--~g----w~-~-~~~~~~~e~a~~~~~~Ga----~~ilvtdi~~dG~~~-G---~d~eli~~l~~~~-- 256 (316)
. | .|.- .+ +. + ..--++.+..+...+.|+ +.+-+--=+.-|.+. + .|++.++++.+.+
T Consensus 166 L--G--~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v~~ 241 (350)
T PRK09197 166 L--G--VTGGEEDGVDNSHEDNSKLYTQPEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYVSK 241 (350)
T ss_pred E--e--ccCCCcCCccccccccccccCCHHHHHHHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHHHHH
Confidence 0 1 1110 01 11 0 011256666666667787 665433234556665 3 3999999999887
Q ss_pred -------CCcEEEEeCCCCH-HHHHHHHHhCCCcCEEEEccch
Q 021156 257 -------PIPVTYAGGVTTM-ADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 257 -------~iPVIasGGI~s~-eDi~~l~~~G~g~~gVivG~Al 291 (316)
++|+..-||-+.+ ++++++.+.| +..+=|++.+
T Consensus 242 ~~~~~~~~vPLVLHGgSGipde~i~~ai~~G--I~KINi~T~l 282 (350)
T PRK09197 242 KFGLPAKPFDFVFHGGSGSTLEEIREAVSYG--VVKMNIDTDT 282 (350)
T ss_pred hhCCCCCCCCEEEeCCCCCCHHHHHHHHHCC--CeeEEeCcHH
Confidence 8999999998877 6788899988 9999999876
No 427
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=93.35 E-value=5.4 Score=37.04 Aligned_cols=162 Identities=14% Similarity=0.075 Sum_probs=101.0
Q ss_pred HHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCee
Q 021156 122 KAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKY 200 (316)
Q Consensus 122 ~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~ 200 (316)
...+.+.+++.++|+.. =+. .++++.+.+. ++..-||+....| .++++++.+ .| .-|++ + .|.
T Consensus 78 l~~l~~~~~~~Gl~~~t--~~~d~~~~~~l~~~-~d~lkI~s~~~~n----~~LL~~~a~-~g-kPVil----k--~G~- 141 (260)
T TIGR01361 78 LKLLRRAADEHGLPVVT--EVMDPRDVEIVAEY-ADILQIGARNMQN----FELLKEVGK-QG-KPVLL----K--RGM- 141 (260)
T ss_pred HHHHHHHHHHhCCCEEE--eeCChhhHHHHHhh-CCEEEECcccccC----HHHHHHHhc-CC-CcEEE----e--CCC-
Confidence 33455556677777665 344 4778888888 9999999999997 999988865 33 22222 2 221
Q ss_pred EEEeCCcceecccCHHHHHHHHHHcCCCEEEEee--cCC-ccc-cCCCCHHHHHHHhhcCCCcEEE-EeCCCC-----HH
Q 021156 201 AIVTDRWQKFSDVYLDERVLDFLASYADEFLVHG--VDV-EGK-KLGIDDELVALLGKYSPIPVTY-AGGVTT-----MA 270 (316)
Q Consensus 201 ~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd--i~~-dG~-~~G~d~eli~~l~~~~~iPVIa-sGGI~s-----~e 270 (316)
. .+--+....+..+.+.|...+++.. ++. +++ ..-.|+..+..+++..+.||++ ++.... ..
T Consensus 142 -------~-~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~ 213 (260)
T TIGR01361 142 -------G-NTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIP 213 (260)
T ss_pred -------C-CCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHH
Confidence 0 0111344556777788987776543 321 122 2345899999999878899999 555444 34
Q ss_pred HHHHHHHhCCCcCEEEEcc------chhhccCcccHHHHHHHHHh
Q 021156 271 DLEKIKVAGIGRVDVTVGS------ALDIFGGNLAYKDVVAWHAQ 309 (316)
Q Consensus 271 Di~~l~~~G~g~~gVivG~------Al~~~~g~~~~~~~~~~~~~ 309 (316)
-.......| ++|+++-+ ++--+...++++++.+++++
T Consensus 214 ~~~aAva~G--a~gl~iE~H~t~d~a~~D~~~sl~p~~l~~lv~~ 256 (260)
T TIGR01361 214 LAKAAIAAG--ADGLMIEVHPDPEKALSDSKQQLTPEEFKRLVKE 256 (260)
T ss_pred HHHHHHHcC--CCEEEEEeCCCccccCCcchhcCCHHHHHHHHHH
Confidence 444555566 89988764 33112234677777766654
No 428
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=93.34 E-value=2.5 Score=39.87 Aligned_cols=144 Identities=11% Similarity=0.060 Sum_probs=81.2
Q ss_pred HHHHhCCCcEEEe--cCCC---H-HHHHHHHHcCCCEEEe-CCeeecC-------C--C-CCH-HHHHHHHHHh----cC
Q 021156 127 EALHAYPGGLQVG--GGIN---S-DNSLSYIEEGATHVIV-TSYVFNN-------G--Q-MDL-ERLKDLVRVV----GK 184 (316)
Q Consensus 127 ~~v~~~~~pl~vG--GGIr---~-e~~~~~l~~Gad~VVi-gt~~~~~-------~--~-~~~-eli~ei~~~~----G~ 184 (316)
.+...+.+|++++ +|.+ . +.++++.++|+.-+.| +...-+. + . +++ +.++++.... +.
T Consensus 72 ~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~ 151 (285)
T TIGR02320 72 FMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTE 151 (285)
T ss_pred HHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCC
Confidence 3334578897663 3444 2 4588999999999988 2111000 0 0 112 3444443322 11
Q ss_pred c-eEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC-----CC
Q 021156 185 Q-RLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS-----PI 258 (316)
Q Consensus 185 ~-~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~-----~i 258 (316)
+ -|++-.|.+ +...++ -+.++.++.+.+.|++.+.+... -.+.+.++++.+.+ ++
T Consensus 152 ~~~IiARTDa~-------~~~~~~-----~eAi~Ra~ay~eAGAD~ifv~~~-------~~~~~ei~~~~~~~~~~~p~~ 212 (285)
T TIGR02320 152 DFMIIARVESL-------ILGKGM-----EDALKRAEAYAEAGADGIMIHSR-------KKDPDEILEFARRFRNHYPRT 212 (285)
T ss_pred CeEEEEecccc-------cccCCH-----HHHHHHHHHHHHcCCCEEEecCC-------CCCHHHHHHHHHHhhhhCCCC
Confidence 1 112222221 111122 24778899999999999887621 13556666665544 56
Q ss_pred cEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 259 PVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 259 PVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
|+.+..+-...-.+.+|.++| +..|+.|..+
T Consensus 213 pl~~~~~~~~~~~~~eL~~lG--~~~v~~~~~~ 243 (285)
T TIGR02320 213 PLVIVPTSYYTTPTDEFRDAG--ISVVIYANHL 243 (285)
T ss_pred CEEEecCCCCCCCHHHHHHcC--CCEEEEhHHH
Confidence 887755322233578888888 8889998666
No 429
>PLN02858 fructose-bisphosphate aldolase
Probab=93.31 E-value=1.9 Score=49.15 Aligned_cols=153 Identities=14% Similarity=0.105 Sum_probs=94.5
Q ss_pred HhCCCc--EEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEE-eCC
Q 021156 130 HAYPGG--LQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIV-TDR 206 (316)
Q Consensus 130 ~~~~~p--l~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~-~~g 206 (316)
++..+| +-.+=|-..+.+++++++|++.|.++...+.- +=|.+..+++++...+- -+++-.-. | .|. ..+
T Consensus 1166 ~~~~vpV~lHLDHg~~~~~i~~ai~~Gf~SVM~DgS~l~~-eeNi~~t~~vv~~Ah~~--gv~VEaEl--G--~v~g~e~ 1238 (1378)
T PLN02858 1166 EQASVPITVHFDHGTSKHELLEALELGFDSVMVDGSHLSF-TENISYTKSISSLAHSK--GLMVEAEL--G--RLSGTED 1238 (1378)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHhCCCEEEEeCCCCCH-HHHHHHHHHHHHHHHHc--CCEEEEEe--c--ccCCccC
Confidence 334444 45566666789999999999999997654421 00356666666544211 13333210 1 121 011
Q ss_pred c----c-eecccCHHHHHHHHHHcCCCEEEEeecCCccccCC----CCHHHHHHHhhcC---CCcEEEEeCCCCH-HHHH
Q 021156 207 W----Q-KFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLG----IDDELVALLGKYS---PIPVTYAGGVTTM-ADLE 273 (316)
Q Consensus 207 w----~-~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G----~d~eli~~l~~~~---~iPVIasGGI~s~-eDi~ 273 (316)
. . +..--++.+..+...+-|++.+-+--=+..|.+.+ .|+++++++.+.+ ++|+..-||=+.. ++++
T Consensus 1239 ~~~~~~~~~~~T~p~~a~~Fv~~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~~~~~~ 1318 (1378)
T PLN02858 1239 GLTVEEYEAKLTDVDQAKEFIDETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLVLHGASGLPESLIK 1318 (1378)
T ss_pred CccccccccCCCCHHHHHHHHHhcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcEEEeCCCCCCHHHHH
Confidence 1 0 00012565655666667999875433244455543 4999999999988 7999988876654 5678
Q ss_pred HHHHhCCCcCEEEEccch
Q 021156 274 KIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 274 ~l~~~G~g~~gVivG~Al 291 (316)
++.+.| +..|=|++.+
T Consensus 1319 ~ai~~G--i~KiNi~T~~ 1334 (1378)
T PLN02858 1319 ECIENG--VRKFNVNTEV 1334 (1378)
T ss_pred HHHHcC--CeEEEeCHHH
Confidence 888888 9999999876
No 430
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=93.27 E-value=0.27 Score=49.65 Aligned_cols=68 Identities=21% Similarity=0.229 Sum_probs=49.5
Q ss_pred HHHHHHHHcCCCcceEEEecCC--------------cccHHHHHHHH---HhCCCcEEEecCCC-HHHHHHHHHcCCCEE
Q 021156 97 EFANLYKEDGLTGGHAIMLGAD--------------PLSKAAAIEAL---HAYPGGLQVGGGIN-SDNSLSYIEEGATHV 158 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvDLda~--------------~~~~~~i~~~v---~~~~~pl~vGGGIr-~e~~~~~l~~Gad~V 158 (316)
+.++.+.++|++.+ +...+ .+....+.++. +..++|++..|||+ ..|+.+++.+||+.|
T Consensus 278 ~~~~~l~~~G~d~i---~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~~~~di~kala~GA~~v 354 (475)
T TIGR01303 278 EGVRDLLEAGANII---KVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGVRHPRDVALALAAGASNV 354 (475)
T ss_pred HHHHHHHHhCCCEE---EECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 57788888888754 32211 12334444543 44689999999999 699999999999999
Q ss_pred EeCCeeecC
Q 021156 159 IVTSYVFNN 167 (316)
Q Consensus 159 Vigt~~~~~ 167 (316)
.+|+.+-..
T Consensus 355 m~g~~~ag~ 363 (475)
T TIGR01303 355 MVGSWFAGT 363 (475)
T ss_pred eechhhccc
Confidence 999987543
No 431
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=93.25 E-value=0.37 Score=45.38 Aligned_cols=75 Identities=19% Similarity=0.140 Sum_probs=55.2
Q ss_pred cCHHHHHHHHHHcCCCcceE--EEecCC-----cccHHHHHHHHHhCCCcEEEec--CCCHHHHHHHHHcCCCEEEeCCe
Q 021156 93 KSAAEFANLYKEDGLTGGHA--IMLGAD-----PLSKAAAIEALHAYPGGLQVGG--GINSDNSLSYIEEGATHVIVTSY 163 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~l--vDLda~-----~~~~~~i~~~v~~~~~pl~vGG--GIr~e~~~~~l~~Gad~VVigt~ 163 (316)
.+|.+..+..++.|+|.+-+ =-.-+. ..+.+.+.++.+.+++|+..=| ||..+++.++.+.|+++|.+.|.
T Consensus 153 t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~kinv~T~ 232 (281)
T PRK06806 153 TSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKINVATA 232 (281)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEEhHH
Confidence 58987666555668875555 111111 2345556566667889999999 99999999999999999999999
Q ss_pred eecC
Q 021156 164 VFNN 167 (316)
Q Consensus 164 ~~~~ 167 (316)
...+
T Consensus 233 i~~a 236 (281)
T PRK06806 233 TFNS 236 (281)
T ss_pred HHHH
Confidence 8875
No 432
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=93.23 E-value=0.44 Score=41.69 Aligned_cols=73 Identities=19% Similarity=0.140 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHcCCCcceE--EEecCCc------ccHHHHHHHHHhC-CCcEEEecCCCHHHHHHHHHcCCCEEEeCCee
Q 021156 94 SAAEFANLYKEDGLTGGHA--IMLGADP------LSKAAAIEALHAY-PGGLQVGGGINSDNSLSYIEEGATHVIVTSYV 164 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~l--vDLda~~------~~~~~i~~~v~~~-~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~ 164 (316)
++.++.+ ..+.|++.+.+ +.-...+ ...+.+.+.++.. ++|+.+.|||+.+++..+++.|++.|++++..
T Consensus 105 ~~~e~~~-a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI~~~~~~~~~~~G~~gva~~~~i 183 (196)
T TIGR00693 105 NLEELAE-AEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGITLENAAEVLAAGADGVAVVSAI 183 (196)
T ss_pred CHHHHHH-HhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEhHHh
Confidence 5665544 44567775443 1111111 1234444444444 48999999999899999999999999999998
Q ss_pred ecC
Q 021156 165 FNN 167 (316)
Q Consensus 165 ~~~ 167 (316)
.+.
T Consensus 184 ~~~ 186 (196)
T TIGR00693 184 MQA 186 (196)
T ss_pred hCC
Confidence 764
No 433
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.17 E-value=0.56 Score=42.30 Aligned_cols=70 Identities=23% Similarity=0.295 Sum_probs=51.9
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCC-CcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYP-GGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~-~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~ 166 (316)
.+|.|+...+ ++|++.+.++- +.... ...++.++ -.+ +|+..=|||+.+.+..|+++|++.+.+|+....
T Consensus 117 ~T~~E~~~A~-~~Gad~vklFP--a~~~G-~~~ik~l~~~~p~ip~~atGGI~~~N~~~~l~aGa~~vavgs~l~~ 188 (213)
T PRK06552 117 MTVTEIVTAL-EAGSEIVKLFP--GSTLG-PSFIKAIKGPLPQVNVMVTGGVNLDNVKDWFAAGADAVGIGGELNK 188 (213)
T ss_pred CCHHHHHHHH-HcCCCEEEECC--cccCC-HHHHHHHhhhCCCCEEEEECCCCHHHHHHHHHCCCcEEEEchHHhC
Confidence 4687777665 58898888732 22222 33444444 344 999999999999999999999999999988765
No 434
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=93.17 E-value=0.27 Score=43.57 Aligned_cols=50 Identities=24% Similarity=0.266 Sum_probs=44.1
Q ss_pred CCCcEEEecCCCHHHHHHHHHcC-CCEEEeCCeeecC-CCCCHHHHHHHHHH
Q 021156 132 YPGGLQVGGGINSDNSLSYIEEG-ATHVIVTSYVFNN-GQMDLERLKDLVRV 181 (316)
Q Consensus 132 ~~~pl~vGGGIr~e~~~~~l~~G-ad~VVigt~~~~~-~~~~~eli~ei~~~ 181 (316)
...|+.+.|||+.+.+..+++.| ++.|.++|..... |.-|++.++++.+.
T Consensus 151 ~~~PvilaGGI~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~kd~~ki~~~~~~ 202 (203)
T cd00405 151 SRKPVILAGGLTPDNVAEAIRLVRPYGVDVSSGVETSPGIKDPEKIRAFIEA 202 (203)
T ss_pred cCCCEEEECCCChHHHHHHHHhcCCCEEEcCCcccCCCCCcCHHHHHHHHHh
Confidence 57899999999999999999999 9999999999877 66678888888764
No 435
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=93.15 E-value=1.4 Score=39.77 Aligned_cols=127 Identities=17% Similarity=0.157 Sum_probs=71.3
Q ss_pred HHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCC
Q 021156 149 SYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYAD 228 (316)
Q Consensus 149 ~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~ 228 (316)
.+.++|||.+.+-... . ++.+++..+........+.+|+. . ..+ .+.++...+.+..
T Consensus 75 ~~~~~Gad~vTvH~~a--~----~~~i~~~~~~~~~~g~~~~V~ll--t--------------s~~-~~~l~~~~~~~~~ 131 (216)
T PRK13306 75 MAFEAGADWVTVICAA--H----IPTIKAALKVAKEFNGEIQIELY--G--------------NWT-WEQAQQWRDAGIS 131 (216)
T ss_pred HHHHCCCCEEEEeCCC--C----HHHHHHHHHHHHHcCCEEEEEEC--C--------------CCC-HHHHHHHHcCChh
Confidence 4778999999887644 2 56556555432111125667664 1 112 2344566666766
Q ss_pred EEEE-eecCC--cccc-CCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156 229 EFLV-HGVDV--EGKK-LGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV 304 (316)
Q Consensus 229 ~ilv-tdi~~--dG~~-~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~ 304 (316)
.+++ ..++. +|.. .+...+.++++++. +..+.+.|||+- +.+..+.+.+ ++-+|+||++ +.-. ++.+..
T Consensus 132 ~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~~-~~~i~V~gGI~~-~~~~~~~~~~--ad~~VvGr~I--~~a~-dp~~a~ 204 (216)
T PRK13306 132 QVIYHRSRDAQLAGVAWGEKDLNKVKKLSDM-GFKVSVTGGLVV-EDLKLFKGIP--VKTFIAGRAI--RGAA-DPAAAA 204 (216)
T ss_pred hhhhhhhhhhhhcCCCCCHHHHHHHHHHhcC-CCeEEEcCCCCH-hhHHHHhcCC--CCEEEECCcc--cCCC-CHHHHH
Confidence 5443 23322 2222 11244556666542 445899999995 3333455556 8999999999 6433 344443
Q ss_pred H
Q 021156 305 A 305 (316)
Q Consensus 305 ~ 305 (316)
+
T Consensus 205 ~ 205 (216)
T PRK13306 205 R 205 (216)
T ss_pred H
Confidence 3
No 436
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=93.14 E-value=0.37 Score=48.92 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEc
Q 021156 214 YLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVG 288 (316)
Q Consensus 214 ~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG 288 (316)
+..+.+..+.+.|++.|.+..- +|... .-++.++++++.. ++||++ |.+.|.++++.+.++| ++++.+|
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a--~G~s~-~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~aG--ad~I~vg 310 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSS--QGNSI-YQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDAG--ADGLRIG 310 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecC--CCCch-HHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHcC--CCEEEEC
Confidence 3478899999999998765442 33322 2378899998764 677777 8999999999999999 8989876
No 437
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.12 E-value=0.41 Score=45.00 Aligned_cols=68 Identities=19% Similarity=0.200 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH---h----CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH---A----YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~---~----~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~ 166 (316)
+-++.+....++|++ ++-||.- ..+.+.++++ . -.+.+.+.|||+.+.+.+|.+.|+|.+++|+..+.
T Consensus 190 ~~leea~~a~~agaD---iI~LDn~--~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~galt~s 264 (278)
T PRK08385 190 ESLEDALKAAKAGAD---IIMLDNM--TPEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKLDVDVISLGALTHS 264 (278)
T ss_pred CCHHHHHHHHHcCcC---EEEECCC--CHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHcCCCEEEeChhhcC
Confidence 344566677788887 7778753 2334444443 2 24679999999999999999999999999998764
No 438
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=93.02 E-value=0.54 Score=42.51 Aligned_cols=65 Identities=22% Similarity=0.204 Sum_probs=47.1
Q ss_pred HHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEEecCC--CH-----HHHHHHHHcCCCEEEeCCeeecC
Q 021156 99 ANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGI--NS-----DNSLSYIEEGATHVIVTSYVFNN 167 (316)
Q Consensus 99 a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~vGGGI--r~-----e~~~~~l~~Gad~VVigt~~~~~ 167 (316)
++...+.|++.+.+- . ..+.+.+.++++..++|+.+-||+ ++ +.++.++++||+.|.+|+..++.
T Consensus 149 ~~~a~~~GaD~Ik~~---~-~~~~~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~ 220 (235)
T cd00958 149 ARIGAELGADIVKTK---Y-TGDAESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQR 220 (235)
T ss_pred HHHHHHHCCCEEEec---C-CCCHHHHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcC
Confidence 455666788876662 1 123455666666778999886776 32 34889999999999999999876
No 439
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=93.01 E-value=2.1 Score=41.42 Aligned_cols=89 Identities=20% Similarity=0.242 Sum_probs=54.6
Q ss_pred HHHHHHHHHH--cCCCEEEEeecCCccc-cCCCC-----------HHHHHHHhhcCCCcEEE-EeCCCCHHHHHHHH---
Q 021156 215 LDERVLDFLA--SYADEFLVHGVDVEGK-KLGID-----------DELVALLGKYSPIPVTY-AGGVTTMADLEKIK--- 276 (316)
Q Consensus 215 ~~e~a~~~~~--~Ga~~ilvtdi~~dG~-~~G~d-----------~eli~~l~~~~~iPVIa-sGGI~s~eDi~~l~--- 276 (316)
+...++.+.+ +|++-+= +....+.. ..|++ .+.++++.+.+++|+++ |||+ +.+++.+.+
T Consensus 186 V~~a~r~~~~~elGaDvlK-ve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~-~~~~f~~~l~~A 263 (340)
T PRK12858 186 VIKTMEEFSKPRYGVDVLK-VEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGV-SPELFRRTLEFA 263 (340)
T ss_pred HHHHHHHHhhhccCCeEEE-eeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHHHHH
Confidence 5556777774 9997442 33332221 12322 15677777788999876 7777 666655444
Q ss_pred -HhCCCc--CEEEEccchhhccCcccH------HHHHHHHHh
Q 021156 277 -VAGIGR--VDVTVGSALDIFGGNLAY------KDVVAWHAQ 309 (316)
Q Consensus 277 -~~G~g~--~gVivG~Al~~~~g~~~~------~~~~~~~~~ 309 (316)
+.| + .||++||++ +...+.. +...+|++.
T Consensus 264 ~~aG--a~f~Gvl~GRni--wq~~v~~~~~~~~~~~~~~l~~ 301 (340)
T PRK12858 264 CEAG--ADFSGVLCGRAT--WQDGIEPYAAEGEEARRAWLNT 301 (340)
T ss_pred HHcC--CCccchhhhHHH--HhhhhccccCCCHHHHHHHHHH
Confidence 345 6 999999999 6655543 334556655
No 440
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.00 E-value=0.58 Score=42.23 Aligned_cols=87 Identities=22% Similarity=0.177 Sum_probs=59.3
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHh--CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCC-
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA--YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQ- 169 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~- 169 (316)
-+|-| +....++|++-+.+++-+... -...++.++. -++|+..-|||+.+++..|+++|+..++.||..++...
T Consensus 116 ~TptE-i~~a~~~Ga~~vKlFPa~~~g--g~~~lk~l~~p~p~~~~~ptGGV~~~ni~~~l~ag~v~~vggs~L~~~~~~ 192 (212)
T PRK05718 116 STPSE-LMLGMELGLRTFKFFPAEASG--GVKMLKALAGPFPDVRFCPTGGISPANYRDYLALPNVLCIGGSWMVPKDAI 192 (212)
T ss_pred CCHHH-HHHHHHCCCCEEEEccchhcc--CHHHHHHHhccCCCCeEEEeCCCCHHHHHHHHhCCCEEEEEChHhCCcchh
Confidence 47888 555667899999997754221 2334455553 24899999999999999999999777777887765311
Q ss_pred --CCHHHHHHHHHHh
Q 021156 170 --MDLERLKDLVRVV 182 (316)
Q Consensus 170 --~~~eli~ei~~~~ 182 (316)
-+.+.+++..+.+
T Consensus 193 ~~~~~~~i~~~a~~~ 207 (212)
T PRK05718 193 ENGDWDRITRLAREA 207 (212)
T ss_pred ccccHHHHHHHHHHH
Confidence 1355555555544
No 441
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=92.99 E-value=1.8 Score=42.95 Aligned_cols=138 Identities=20% Similarity=0.110 Sum_probs=90.5
Q ss_pred HHHHHHHHcCCCEEE--eCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156 145 DNSLSYIEEGATHVI--VTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF 222 (316)
Q Consensus 145 e~~~~~l~~Gad~VV--igt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~ 222 (316)
++++++.+.|...+= +|..... +.+.++.+.+.+|+ .+.+.+|+. .+|... +..++++.+
T Consensus 202 ~~a~~~~~~Gf~~~KiKvg~~~~~----d~~~v~avRe~vG~-~~~L~vDaN----------~~w~~~---~A~~~~~~L 263 (415)
T cd03324 202 RLCKEALAQGFTHFKLKVGADLED----DIRRCRLAREVIGP-DNKLMIDAN----------QRWDVP---EAIEWVKQL 263 (415)
T ss_pred HHHHHHHHcCCCEEEEeCCCCHHH----HHHHHHHHHHhcCC-CCeEEEECC----------CCCCHH---HHHHHHHHh
Confidence 457777788887543 4542223 37889999999984 677889973 356532 366778888
Q ss_pred HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC---CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCccc
Q 021156 223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYS---PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLA 299 (316)
Q Consensus 223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~---~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~ 299 (316)
.+.++..+ +.-....|++.++++++.+ ++||.+.=-+.+..+++++++.+ .++.+.+--.- .+|-..
T Consensus 264 ~~~~l~~i-------EEP~~~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~-a~dil~~d~~~--~GGit~ 333 (415)
T cd03324 264 AEFKPWWI-------EEPTSPDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAG-AIDVVQIDSCR--LGGVNE 333 (415)
T ss_pred hccCCCEE-------ECCCCCCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcC-CCCEEEeCccc--cCCHHH
Confidence 87776532 1122334788899998877 68986655678999999999987 35545444333 445445
Q ss_pred HHHHHHHHHhh
Q 021156 300 YKDVVAWHAQQ 310 (316)
Q Consensus 300 ~~~~~~~~~~~ 310 (316)
..++.+++.+.
T Consensus 334 ~~kia~lA~a~ 344 (415)
T cd03324 334 NLAVLLMAAKF 344 (415)
T ss_pred HHHHHHHHHHc
Confidence 55665555553
No 442
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=92.98 E-value=0.52 Score=44.25 Aligned_cols=68 Identities=21% Similarity=0.193 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHh-----CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA-----YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~-----~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~ 166 (316)
+.++-|+.+.++|++ ++-||.- ..+.+.+.++. -++.+.+-|||+.+.+..|...|+|.+++|+..+.
T Consensus 196 ~tleea~ea~~~GaD---iI~lDn~--~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ya~~GvD~is~gal~~a 268 (277)
T TIGR01334 196 DTIEQALTVLQASPD---ILQLDKF--TPQQLHHLHERLKFFDHIPTLAAAGGINPENIADYIEAGIDLFITSAPYYA 268 (277)
T ss_pred CCHHHHHHHHHcCcC---EEEECCC--CHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeCcceec
Confidence 355677777788876 6777742 34444444432 34679999999999999999999999999997655
No 443
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.94 E-value=4.3 Score=40.52 Aligned_cols=156 Identities=10% Similarity=0.086 Sum_probs=94.0
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCcc-cHHHHHHHHHhCCCcEEEecCC-CH-----HHHHHHHHcCCCEEEeCCeeec
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADPL-SKAAAIEALHAYPGGLQVGGGI-NS-----DNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~~-~~~~i~~~v~~~~~pl~vGGGI-r~-----e~~~~~l~~Gad~VVigt~~~~ 166 (316)
....+|..+...|. .+.+++.|--.+ ....+.......++|+.....- .. +.++.+.+.++|.|+|+|+-+.
T Consensus 116 taaKLA~~l~~~G~-kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 116 TCTKLAYYYQRKGF-KPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKENFDIIIVDTSGRH 194 (429)
T ss_pred HHHHHHHHHHHCCC-CEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 45678888877774 678888874321 1222222334467887653332 22 3455555679999999999654
Q ss_pred CCCCCHHHHHHHHHH---hcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH-cCCCEEEEeecCCccccC
Q 021156 167 NGQMDLERLKDLVRV---VGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA-SYADEFLVHGVDVEGKKL 242 (316)
Q Consensus 167 ~~~~~~eli~ei~~~---~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~-~Ga~~ilvtdi~~dG~~~ 242 (316)
. .+.++++++.+. ..++.+++-+|.- - +.+..+.++.+.+ .+++.+++|-+|.+-. .
T Consensus 195 ~--~d~~lm~El~~i~~~~~p~e~lLVlda~--~--------------Gq~a~~~a~~F~~~~~~~g~IlTKlD~~ar-g 255 (429)
T TIGR01425 195 K--QEDSLFEEMLQVAEAIQPDNIIFVMDGS--I--------------GQAAEAQAKAFKDSVDVGSVIITKLDGHAK-G 255 (429)
T ss_pred c--chHHHHHHHHHHhhhcCCcEEEEEeccc--c--------------ChhHHHHHHHHHhccCCcEEEEECccCCCC-c
Confidence 2 135666766654 3344555666643 1 1234667777754 5899999999886533 2
Q ss_pred CCCHHHHHHHhhcCCCcEEEEeCCCCHHHHH
Q 021156 243 GIDDELVALLGKYSPIPVTYAGGVTTMADLE 273 (316)
Q Consensus 243 G~d~eli~~l~~~~~iPVIasGGI~s~eDi~ 273 (316)
|.-+ .+...+++||.+-|--..++|++
T Consensus 256 G~aL----s~~~~t~~PI~fig~Ge~v~Dle 282 (429)
T TIGR01425 256 GGAL----SAVAATKSPIIFIGTGEHIDDFE 282 (429)
T ss_pred cHHh----hhHHHHCCCeEEEcCCCChhhcC
Confidence 2212 33445678998888666666664
No 444
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=92.92 E-value=0.68 Score=44.33 Aligned_cols=147 Identities=15% Similarity=0.155 Sum_probs=87.0
Q ss_pred cCHHHHHHHHH-HcCCCcceEEEecC-C-ccc--------HHHHHHHH-HhCCCcEEEecCC----CHHHHHHHHHcCC-
Q 021156 93 KSAAEFANLYK-EDGLTGGHAIMLGA-D-PLS--------KAAAIEAL-HAYPGGLQVGGGI----NSDNSLSYIEEGA- 155 (316)
Q Consensus 93 ~~p~e~a~~~~-~~G~~~l~lvDLda-~-~~~--------~~~i~~~v-~~~~~pl~vGGGI----r~e~~~~~l~~Ga- 155 (316)
+||.++|++-. +.|++ ++||.- . .++ -..+.+.+ ..+++|+.+.|=- ..+-+++.++.-.
T Consensus 75 ~~p~~~Ak~q~~~~GAd---~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g 151 (319)
T PRK04452 75 NDPAAWAKKCVEEYGAD---MITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEG 151 (319)
T ss_pred cCHHHHHHHHHHHhCCC---EEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCC
Confidence 47888888655 45655 666662 1 221 12233444 3578999776654 2466777787544
Q ss_pred CEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEe-eeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCC--CEEEE
Q 021156 156 THVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLD-LSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYA--DEFLV 232 (316)
Q Consensus 156 d~VVigt~~~~~~~~~~eli~ei~~~~G~~~Ivvs-lD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga--~~ilv 232 (316)
.+.+|+++..+| .+.+-.++.+||-.-+..+ .|+. ...++...+.+.|+ +.|++
T Consensus 152 ~~pLInSat~en----~~~i~~lA~~y~~~Vva~s~~Dln-------------------~ak~L~~~l~~~Gi~~edIvi 208 (319)
T PRK04452 152 ERCLLGSAEEDN----YKKIAAAAMAYGHAVIAWSPLDIN-------------------LAKQLNILLTELGVPRERIVM 208 (319)
T ss_pred CCCEEEECCHHH----HHHHHHHHHHhCCeEEEEcHHHHH-------------------HHHHHHHHHHHcCCCHHHEEE
Confidence 458999999887 8888999999973322222 1211 24466677788898 66664
Q ss_pred eecC-CccccCCC---CHHHHHHHh----hcCCCcEEEEeC
Q 021156 233 HGVD-VEGKKLGI---DDELVALLG----KYSPIPVTYAGG 265 (316)
Q Consensus 233 tdi~-~dG~~~G~---d~eli~~l~----~~~~iPVIasGG 265 (316)
-... .-|+.... +++.++.++ +....|+|..=+
T Consensus 209 DP~~~~lg~g~e~~~~~~e~IR~aAl~~d~~l~~P~i~~~~ 249 (319)
T PRK04452 209 DPTTGALGYGIEYSYSVMERIRLAALKGDEMLQMPMISGVG 249 (319)
T ss_pred eCCcccccCCHHHHHHHHHHHHHHHhcCCCcCCCCeEecch
Confidence 3322 12232222 445555543 124679877666
No 445
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=92.91 E-value=4.6 Score=38.99 Aligned_cols=150 Identities=9% Similarity=0.046 Sum_probs=93.6
Q ss_pred HhCCCcE--EEecCC--CHHHHHHHHHcC-----------CCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeee
Q 021156 130 HAYPGGL--QVGGGI--NSDNSLSYIEEG-----------ATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCR 194 (316)
Q Consensus 130 ~~~~~pl--~vGGGI--r~e~~~~~l~~G-----------ad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k 194 (316)
++..+|+ -.+=|- ..+.+++++++| ++.|.++...+.- +=|.+..+++++...+-. +++-.-
T Consensus 82 ~~~~VPV~lHLDH~~~~~~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~l~~-eeNi~~T~~vve~Ah~~g--i~VEaE 158 (340)
T cd00453 82 EHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESL-QENIEICSKYLERMSKIG--MTLEIE 158 (340)
T ss_pred HHCCCCEEEEcCCCCCCCHHHHHHHHHcCCccccccCCCCceeEEecCCCCCH-HHHHHHHHHHHHHHHHcC--CEEEEE
Confidence 3445554 556665 469999999999 9999997655421 003556666665442222 333321
Q ss_pred ecCCeeEEEeCCcceec-----------ccCHHHHHHHHHHcC----CCEEEEeecCCccccCC----CCHHHHHHHhhc
Q 021156 195 KKDGKYAIVTDRWQKFS-----------DVYLDERVLDFLASY----ADEFLVHGVDVEGKKLG----IDDELVALLGKY 255 (316)
Q Consensus 195 ~~~g~~~v~~~gw~~~~-----------~~~~~e~a~~~~~~G----a~~ilvtdi~~dG~~~G----~d~eli~~l~~~ 255 (316)
+-.-|+.+.. --++.+..+.+.+.| ++.+-+--=+.-|.+.+ .|+++++++.+.
T Consensus 159 -------lG~igG~ed~~~~~~~~~~~~yT~Peea~~Fv~~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~~~~L~~i~~~ 231 (340)
T cd00453 159 -------LGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKKGNVVLTPTILRDSQEY 231 (340)
T ss_pred -------EEecCCccCCcccccccccccCCCHHHHHHHHHHhCCCCcceEEeeecCccccCCCCCCCccCHHHHHHHHHH
Confidence 1111111100 114777777777889 78664322233344432 499999999887
Q ss_pred C---------CCcEEEEeCCCCH-HHHHHHHHhCCCcCEEEEccch
Q 021156 256 S---------PIPVTYAGGVTTM-ADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 256 ~---------~iPVIasGGI~s~-eDi~~l~~~G~g~~gVivG~Al 291 (316)
+ ++|+..-||=+.. +++.++.+.| +..+=|++.+
T Consensus 232 ~~~~~gl~~~~~pLVlHGgSG~~~e~~~~ai~~G--i~KiNi~Te~ 275 (340)
T cd00453 232 VSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYG--VVKMNIDTDT 275 (340)
T ss_pred HHhhcccCCCCCceEEeCCCCCCHHHHHHHHHcC--CeEEEcccHH
Confidence 6 7999999988776 5567788888 8889898875
No 446
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=92.80 E-value=0.3 Score=46.25 Aligned_cols=66 Identities=23% Similarity=0.250 Sum_probs=46.3
Q ss_pred HHHHHHcCCCcceEEEecCC-----cccHHHHHHHHHhC--CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCee
Q 021156 99 ANLYKEDGLTGGHAIMLGAD-----PLSKAAAIEALHAY--PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYV 164 (316)
Q Consensus 99 a~~~~~~G~~~l~lvDLda~-----~~~~~~i~~~v~~~--~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~ 164 (316)
|+.-.++|+.++.+=.=.|- ......+-++++++ .+|+.++||+|. .|+.+++..||..|.+|--.
T Consensus 237 A~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~ 310 (363)
T KOG0538|consen 237 ARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPI 310 (363)
T ss_pred HHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCch
Confidence 33344678887766553322 23344455556554 489999999997 99999999999999998643
No 447
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=92.79 E-value=1.6 Score=40.41 Aligned_cols=148 Identities=14% Similarity=0.047 Sum_probs=83.6
Q ss_pred HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHH--hcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156 146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRV--VGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD 221 (316)
Q Consensus 146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~--~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~ 221 (316)
..+.+.++|++.|+||=.-++. ++.+...-.++... .| =..++++.-.. .-+-.|-. ..+-.......
T Consensus 80 S~~mL~d~G~~~viiGHSERR~~~~E~d~~i~~K~~aa~~~G-l~pIlCvGEtl-----~~reag~t--~~v~~~Ql~~~ 151 (251)
T COG0149 80 SAEMLKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKEAG-LTPILCVGETL-----EEREAGKT--LEVLKRQLAAA 151 (251)
T ss_pred CHHHHHHcCCCEEEECccccccccccchHHHHHHHHHHHHCC-CeEEEEcCCCH-----HHHhccCh--HHHHHHHHHHH
Confidence 4778889999999999665443 23322222333322 33 23556653210 00001100 00111112333
Q ss_pred HHHcCC---CEEEEeecCCccccCCCCH---H----HHHHHhhc-----CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEE
Q 021156 222 FLASYA---DEFLVHGVDVEGKKLGIDD---E----LVALLGKY-----SPIPVTYAGGVTTMADLEKIKVAGIGRVDVT 286 (316)
Q Consensus 222 ~~~~Ga---~~ilvtdi~~dG~~~G~d~---e----li~~l~~~-----~~iPVIasGGI~s~eDi~~l~~~G~g~~gVi 286 (316)
+..++. .-|-|-.+..-||...... + .++..... ..+||+++|+|..-++.+.+...+ ++|+.
T Consensus 152 l~~l~~~~~~vIAYEPvWAIGTG~~at~~~a~~v~~~Ir~~~~~~~~~~~~v~IlYGGSV~~~N~~e~~~~~~--idG~L 229 (251)
T COG0149 152 LAALSPEANIVIAYEPVWAIGTGKSASPADAEEVHAFIRAVLAELFGAEEKVRILYGGSVKPGNAAELAAQPD--IDGAL 229 (251)
T ss_pred HhhcCcccCeEEEECCHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcChhHHHHHhcCCC--CCeEE
Confidence 444444 2334677888888766533 2 23333322 379999999999999888888887 99999
Q ss_pred EccchhhccCcccHHHHHHH
Q 021156 287 VGSALDIFGGNLAYKDVVAW 306 (316)
Q Consensus 287 vG~Al~~~~g~~~~~~~~~~ 306 (316)
||+|- .+-. +|.++++.
T Consensus 230 VGgAs--lka~-~f~~ii~~ 246 (251)
T COG0149 230 VGGAS--LKAD-DFLAILEA 246 (251)
T ss_pred Eccee--ecch-hHHHHHHH
Confidence 99999 6532 34444443
No 448
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=92.77 E-value=0.41 Score=45.04 Aligned_cols=74 Identities=19% Similarity=0.101 Sum_probs=53.9
Q ss_pred cCHHHHHHHHHHcCCCcceE-------EEecCCcccHHHHHHHHHhCCCcEEEec--CCCHHHHHHHHHcCCCEEEeCCe
Q 021156 93 KSAAEFANLYKEDGLTGGHA-------IMLGADPLSKAAAIEALHAYPGGLQVGG--GINSDNSLSYIEEGATHVIVTSY 163 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~l-------vDLda~~~~~~~i~~~v~~~~~pl~vGG--GIr~e~~~~~l~~Gad~VVigt~ 163 (316)
.+|.+..+..++.|++.+-+ ++-.....+.+.+.++.+.+++|+-.=| ||..+++.++.++|+++|-++|.
T Consensus 153 t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~T~ 232 (282)
T TIGR01859 153 ADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKINIDTD 232 (282)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEEECcH
Confidence 48987666665578875432 1211112355556666667889998888 99999999999999999999998
Q ss_pred eec
Q 021156 164 VFN 166 (316)
Q Consensus 164 ~~~ 166 (316)
...
T Consensus 233 l~~ 235 (282)
T TIGR01859 233 CRI 235 (282)
T ss_pred HHH
Confidence 765
No 449
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=92.75 E-value=2.2 Score=41.40 Aligned_cols=137 Identities=16% Similarity=0.160 Sum_probs=88.4
Q ss_pred HHHHHHH-cCCCEE--EeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156 146 NSLSYIE-EGATHV--IVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF 222 (316)
Q Consensus 146 ~~~~~l~-~Gad~V--Vigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~ 222 (316)
+++.+++ .|...+ =+|.....+ +.+.++.+.+.+|+ .+.+.+|+. .+|... +..++++.+
T Consensus 148 ~~~~~~~~~Gf~~~KiKvg~~~~~~---d~~~v~~~re~~g~-~~~l~~DaN----------~~~~~~---~A~~~~~~l 210 (368)
T TIGR02534 148 EAEERIEEKRHRSFKLKIGARDPAD---DVAHVVAIAKALGD-RASVRVDVN----------AAWDER---TALHYLPQL 210 (368)
T ss_pred HHHHHHHhcCcceEEEEeCCCCcHH---HHHHHHHHHHhcCC-CcEEEEECC----------CCCCHH---HHHHHHHHH
Confidence 4555554 687654 345433222 38899999999974 567888873 246432 356777788
Q ss_pred HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHH
Q 021156 223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKD 302 (316)
Q Consensus 223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~ 302 (316)
.+.++..+ +.=..-.|++.++++++.+++||.+.=-+.+..|+.++.+.+ +++.+.+--.. .+|-....+
T Consensus 211 ~~~~~~~i-------EeP~~~~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~-~~d~~~~d~~~--~GGi~~~~~ 280 (368)
T TIGR02534 211 ADAGVELI-------EQPTPAENREALARLTRRFNVPIMADESVTGPADALAIAKAS-AADVFALKTTK--SGGLLESKK 280 (368)
T ss_pred HhcChhhe-------ECCCCcccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhC-CCCEEEEcccc--cCCHHHHHH
Confidence 77665421 111122368888899888899998877788999999999887 46766665444 455444445
Q ss_pred HHHHHHh
Q 021156 303 VVAWHAQ 309 (316)
Q Consensus 303 ~~~~~~~ 309 (316)
+.+++.+
T Consensus 281 i~~lA~~ 287 (368)
T TIGR02534 281 IAAIAEA 287 (368)
T ss_pred HHHHHHH
Confidence 5555444
No 450
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=92.69 E-value=0.56 Score=46.56 Aligned_cols=61 Identities=20% Similarity=0.256 Sum_probs=43.5
Q ss_pred CCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCC-CHHHHHHHHHHhcCce--EEEeeee
Q 021156 133 PGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQM-DLERLKDLVRVVGKQR--LVLDLSC 193 (316)
Q Consensus 133 ~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~-~~eli~ei~~~~G~~~--IvvslD~ 193 (316)
++||...|||- .+++..+|..||+.|.+||.++-..|. ..+..++....-+.+. ...+.|.
T Consensus 219 ~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~flat~Ea~~s~~~K~~L~~a~~~DT~~tp~~dm 283 (418)
T cd04742 219 PIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQCTVEAGTSDAVKDLLQKAGVQDTAYAPAADM 283 (418)
T ss_pred CceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHhCccccCCHHHHHHHHhCCCCCeEEeccccc
Confidence 59999999997 499999999999999999998865322 2345666654443333 3334554
No 451
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.62 E-value=0.69 Score=43.53 Aligned_cols=65 Identities=15% Similarity=0.124 Sum_probs=48.9
Q ss_pred HHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHh--CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156 97 EFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA--YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~ 166 (316)
+-+....++|++ ++-||.- ..+.+.++++. -..|+.+.|||+.+.+..|.+.|+|.+++|+..+.
T Consensus 205 eea~ea~~~gaD---iI~LDn~--s~e~l~~av~~~~~~~~leaSGGI~~~ni~~yA~tGVD~Is~Galths 271 (281)
T PRK06106 205 DQLEEALELGVD---AVLLDNM--TPDTLREAVAIVAGRAITEASGRITPETAPAIAASGVDLISVGWLTHS 271 (281)
T ss_pred HHHHHHHHcCCC---EEEeCCC--CHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHhcCCCEEEeChhhcC
Confidence 345555567765 6777742 34556666653 34689999999999999999999999999998764
No 452
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=92.57 E-value=10 Score=36.51 Aligned_cols=194 Identities=16% Similarity=0.044 Sum_probs=114.9
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecC--------Cc--ccHHHHHHHH-HhC-CCcEEE--ecCC-CHHHHHHHHHcCCCE
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGA--------DP--LSKAAAIEAL-HAY-PGGLQV--GGGI-NSDNSLSYIEEGATH 157 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda--------~~--~~~~~i~~~v-~~~-~~pl~v--GGGI-r~e~~~~~l~~Gad~ 157 (316)
.+-.++++.+.++|++.+-+-..++ .. ....+.++.+ ... +.++.+ -=|+ +.++++.+.+.|++.
T Consensus 25 ~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~ 104 (337)
T PRK08195 25 EQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYDAGVRV 104 (337)
T ss_pred HHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHHcCCCE
Confidence 4566899999999998887765442 11 1233444444 332 233332 1245 468999999999999
Q ss_pred EEeCCeeecCCCCCHHHHHHHHH---HhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEee
Q 021156 158 VIVTSYVFNNGQMDLERLKDLVR---VVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHG 234 (316)
Q Consensus 158 VVigt~~~~~~~~~~eli~ei~~---~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd 234 (316)
|-+.+..-+ .+.+.+..+ +.|- .+.+.+-. ...+ +.-.+.+.++.+.+.|++.|.+.|
T Consensus 105 iri~~~~~e-----~~~~~~~i~~ak~~G~-~v~~~l~~----------a~~~---~~e~l~~~a~~~~~~Ga~~i~i~D 165 (337)
T PRK08195 105 VRVATHCTE-----ADVSEQHIGLARELGM-DTVGFLMM----------SHMA---PPEKLAEQAKLMESYGAQCVYVVD 165 (337)
T ss_pred EEEEEecch-----HHHHHHHHHHHHHCCC-eEEEEEEe----------ccCC---CHHHHHHHHHHHHhCCCCEEEeCC
Confidence 877653322 333443333 3342 22222211 1111 112467888999999999875554
Q ss_pred cCCccccCCCCH-HHHHHHhhcC--CCcEEEEeC----CCCHHHHHHHHHhCC-CcCEEEEccchhhccCcccHHHHHHH
Q 021156 235 VDVEGKKLGIDD-ELVALLGKYS--PIPVTYAGG----VTTMADLEKIKVAGI-GRVDVTVGSALDIFGGNLAYKDVVAW 306 (316)
Q Consensus 235 i~~dG~~~G~d~-eli~~l~~~~--~iPVIasGG----I~s~eDi~~l~~~G~-g~~gVivG~Al~~~~g~~~~~~~~~~ 306 (316)
.-|.+...+. ++++.+++.. ++|+-+-+. ....+- ..+.+.|. -+++.+-|-+- -.|+.+.++++.+
T Consensus 166 --T~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANs-laAi~aGa~~iD~Sl~GlG~--~aGN~~tE~lv~~ 240 (337)
T PRK08195 166 --SAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANS-LAAVEAGATRIDGSLAGLGA--GAGNTPLEVLVAV 240 (337)
T ss_pred --CCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHH-HHHHHhCCCEEEecChhhcc--cccCccHHHHHHH
Confidence 5577776654 4778887765 678766654 333333 33445673 25566666555 5688999998887
Q ss_pred HHhh
Q 021156 307 HAQQ 310 (316)
Q Consensus 307 ~~~~ 310 (316)
++..
T Consensus 241 L~~~ 244 (337)
T PRK08195 241 LDRM 244 (337)
T ss_pred HHhc
Confidence 7653
No 453
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.48 E-value=0.76 Score=43.43 Aligned_cols=67 Identities=16% Similarity=0.089 Sum_probs=51.0
Q ss_pred HHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHh--CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156 95 AAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA--YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 95 p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~ 166 (316)
-+|.++...++|++ ++-||.- ..+.+.++++. -.+.+.+-|||+.+.+..|...|+|.+++|+..+.
T Consensus 206 tleea~~a~~agaD---iImLDnm--spe~l~~av~~~~~~~~leaSGGI~~~ni~~yA~tGVD~Is~galths 274 (290)
T PRK06559 206 SLAAAEEAAAAGAD---IIMLDNM--SLEQIEQAITLIAGRSRIECSGNIDMTTISRFRGLAIDYVSSGSLTHS 274 (290)
T ss_pred CHHHHHHHHHcCCC---EEEECCC--CHHHHHHHHHHhcCceEEEEECCCCHHHHHHHHhcCCCEEEeCccccC
Confidence 33566667777876 7777742 34555555542 25789999999999999999999999999998774
No 454
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.41 E-value=0.61 Score=43.84 Aligned_cols=67 Identities=12% Similarity=0.006 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhC--CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAY--PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~--~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~ 166 (316)
+.. .++...+.|++.+-+ |. ...+.+.++++.. ++|+.+-|||+.+.+..+.++|+|.|.+|+..+.
T Consensus 197 tle-ea~~A~~~gaDyI~l---D~--~~~e~l~~~~~~~~~~i~i~AiGGIt~~ni~~~a~~Gvd~IAvg~l~~s 265 (277)
T PRK08072 197 TEE-QVREAVAAGADIIMF---DN--RTPDEIREFVKLVPSAIVTEASGGITLENLPAYGGTGVDYISLGFLTHS 265 (277)
T ss_pred CHH-HHHHHHHcCCCEEEE---CC--CCHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhcC
Confidence 454 455566788886644 42 3345566666543 4788899999999999999999999999998764
No 455
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=92.39 E-value=0.66 Score=43.34 Aligned_cols=67 Identities=25% Similarity=0.242 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhC--CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAY--PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~--~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~ 166 (316)
+.. -++...++|++ ++-||.- ..+.+.++++.. ++|+.+-|||+.+.+..+.++|+|.+.+|+..+.
T Consensus 191 s~e-ea~~A~~~gaD---yI~ld~~--~~e~l~~~~~~~~~~ipi~AiGGI~~~ni~~~a~~Gvd~Iav~sl~~~ 259 (268)
T cd01572 191 TLE-QLKEALEAGAD---IIMLDNM--SPEELREAVALLKGRVLLEASGGITLENIRAYAETGVDYISVGALTHS 259 (268)
T ss_pred CHH-HHHHHHHcCCC---EEEECCc--CHHHHHHHHHHcCCCCcEEEECCCCHHHHHHHHHcCCCEEEEEeeecC
Confidence 454 45555567776 4445532 345566666544 5899999999999999999999999999998774
No 456
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=92.37 E-value=1.8 Score=42.32 Aligned_cols=71 Identities=23% Similarity=0.265 Sum_probs=41.7
Q ss_pred HHHHHHHcCCCEEEEeecCCcccc---------CCCCHH-HHHHHhhc-------CCCcEEEEeCCCCHHHHHHHHHhCC
Q 021156 218 RVLDFLASYADEFLVHGVDVEGKK---------LGIDDE-LVALLGKY-------SPIPVTYAGGVTTMADLEKIKVAGI 280 (316)
Q Consensus 218 ~a~~~~~~Ga~~ilvtdi~~dG~~---------~G~d~e-li~~l~~~-------~~iPVIasGGI~s~eDi~~l~~~G~ 280 (316)
.+....+.|+|.|.+-. ..-||. .|..++ .+.++.+. -.+.++++||+++..|+.+++.+|
T Consensus 219 ~~~~~~~ag~D~ItIDG-~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLG- 296 (368)
T PF01645_consen 219 IAAGAAKAGADFITIDG-AEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALG- 296 (368)
T ss_dssp HHHHHHHTT-SEEEEE--TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-
T ss_pred HHHhhhhccCCEEEEeC-CCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcC-
Confidence 34448889999876533 333443 233443 23232211 247899999999999999999999
Q ss_pred CcCEEEEccch
Q 021156 281 GRVDVTVGSAL 291 (316)
Q Consensus 281 g~~gVivG~Al 291 (316)
+++|-+|+++
T Consensus 297 -AD~v~igt~~ 306 (368)
T PF01645_consen 297 -ADAVYIGTAA 306 (368)
T ss_dssp --SEEE-SHHH
T ss_pred -CCeeEecchh
Confidence 8999999976
No 457
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=92.27 E-value=1.3 Score=39.63 Aligned_cols=141 Identities=22% Similarity=0.276 Sum_probs=85.2
Q ss_pred HHHHHHHHHh-----CCCcEEEecCCC------HHH-HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEE-
Q 021156 122 KAAAIEALHA-----YPGGLQVGGGIN------SDN-SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLV- 188 (316)
Q Consensus 122 ~~~i~~~v~~-----~~~pl~vGGGIr------~e~-~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~Iv- 188 (316)
.+.+++.++. +.+|++.=|=-+ .|. ++.+-++||.-.+|=-. .||....+.++..++.|-
T Consensus 79 l~~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDl-------PpEEa~~~Rne~~k~gisl 151 (268)
T KOG4175|consen 79 LNSIIEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDL-------PPEEAETLRNEARKHGISL 151 (268)
T ss_pred HHHHHHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccC-------ChHHHHHHHHHHHhcCceE
Confidence 4455565542 568998887654 122 66777899986555322 255555555544222221
Q ss_pred EeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEE--eecCCccccCCCCH---HHHHHHhhcC-CCcEEE
Q 021156 189 LDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLV--HGVDVEGKKLGIDD---ELVALLGKYS-PIPVTY 262 (316)
Q Consensus 189 vslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilv--tdi~~dG~~~G~d~---eli~~l~~~~-~iPVIa 262 (316)
+.+-.- + .+.+..+.+. .-++.++| ..+-..|+..-.|. +++.++++.. +.|+-+
T Consensus 152 vpLvaP----------------s--TtdeRmell~-~~adsFiYvVSrmG~TG~~~svn~~l~~L~qrvrk~t~dtPlAV 212 (268)
T KOG4175|consen 152 VPLVAP----------------S--TTDERMELLV-EAADSFIYVVSRMGVTGTRESVNEKLQSLLQRVRKATGDTPLAV 212 (268)
T ss_pred EEeeCC----------------C--ChHHHHHHHH-HhhcceEEEEEeccccccHHHHHHHHHHHHHHHHHhcCCCceeE
Confidence 111110 0 1223333333 33555553 33444555444543 3788888876 899999
Q ss_pred EeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 263 AGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 263 sGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
+-||++.||+..+-.. +|||+||+++
T Consensus 213 GFGvst~EHf~qVgsv---aDGVvvGSki 238 (268)
T KOG4175|consen 213 GFGVSTPEHFKQVGSV---ADGVVVGSKI 238 (268)
T ss_pred eeccCCHHHHHhhhhh---ccceEecHHH
Confidence 9999999999999886 5999999987
No 458
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=92.22 E-value=3.1 Score=39.71 Aligned_cols=136 Identities=10% Similarity=0.046 Sum_probs=87.1
Q ss_pred HHHHHHHHcCCCE--EEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156 145 DNSLSYIEEGATH--VIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF 222 (316)
Q Consensus 145 e~~~~~l~~Gad~--VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~ 222 (316)
++++++.+.|... +=+|...... +.+.++.+.+.+| ..+.+.+|.. .+|... +...+++.+
T Consensus 124 ~~a~~~~~~G~~~~KvKvG~~~~~~---d~~~v~air~~~g-~~~~l~vDaN----------~~w~~~---~A~~~~~~l 186 (320)
T PRK02714 124 QQWQTLWQQGYRTFKWKIGVDPLEQ---ELKIFEQLLERLP-AGAKLRLDAN----------GGLSLE---EAKRWLQLC 186 (320)
T ss_pred HHHHHHHHcCCCEEEEEECCCChHH---HHHHHHHHHHhcC-CCCEEEEECC----------CCCCHH---HHHHHHHHH
Confidence 5688888889874 4466532221 2788999999997 4567889973 356432 244555666
Q ss_pred HH---cCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCccc
Q 021156 223 LA---SYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLA 299 (316)
Q Consensus 223 ~~---~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~ 299 (316)
.+ .++..+ . .=...-|++.++++++.+++||.+.=-+.+..|+.++.+.+ +..++.-+.. ..|-
T Consensus 187 ~~l~~~~i~~i-----E--qP~~~~~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~--a~d~v~ik~~--k~GG-- 253 (320)
T PRK02714 187 DRRLSGKIEFI-----E--QPLPPDQFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQG--WRGIFVIKPA--IAGS-- 253 (320)
T ss_pred hhccCCCccEE-----E--CCCCcccHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcC--CCCEEEEcch--hcCC--
Confidence 55 233221 1 11122278888999988899998877788999999999987 4555554544 3333
Q ss_pred HHHHHHHHHhh
Q 021156 300 YKDVVAWHAQQ 310 (316)
Q Consensus 300 ~~~~~~~~~~~ 310 (316)
+.++.++++++
T Consensus 254 i~~~~~~a~~~ 264 (320)
T PRK02714 254 PSRLRQFCQQH 264 (320)
T ss_pred HHHHHHHHHHh
Confidence 34566665553
No 459
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=92.21 E-value=0.93 Score=40.69 Aligned_cols=86 Identities=19% Similarity=0.168 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHh--CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCC--
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA--YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQ-- 169 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~-- 169 (316)
.|-|+...+ ++|++.++++-=+.. .-...++.++. -++|+..-|||+.+++..|+++|+..+.+||..++...
T Consensus 110 TptEi~~A~-~~Ga~~vKlFPA~~~--GG~~yikal~~plp~i~~~ptGGV~~~N~~~~l~aGa~~vg~Gs~L~~~~~~~ 186 (204)
T TIGR01182 110 TPSEIMLAL-ELGITALKLFPAEVS--GGVKMLKALAGPFPQVRFCPTGGINLANVRDYLAAPNVACGGGSWLVPKDLIA 186 (204)
T ss_pred CHHHHHHHH-HCCCCEEEECCchhc--CCHHHHHHHhccCCCCcEEecCCCCHHHHHHHHhCCCEEEEEChhhcCchhhc
Confidence 566776655 467777776653311 11234455554 35899999999999999999999999999999986311
Q ss_pred -CCHHHHHHHHHHh
Q 021156 170 -MDLERLKDLVRVV 182 (316)
Q Consensus 170 -~~~eli~ei~~~~ 182 (316)
-+.+.+++..+.+
T Consensus 187 ~~~~~~i~~~a~~~ 200 (204)
T TIGR01182 187 AGDWDEITRLAREA 200 (204)
T ss_pred cccHHHHHHHHHHH
Confidence 1355555555444
No 460
>PRK14017 galactonate dehydratase; Provisional
Probab=92.17 E-value=2.8 Score=40.95 Aligned_cols=143 Identities=15% Similarity=0.157 Sum_probs=91.0
Q ss_pred HHHHHHHHcCCCEEEe--CCee-----ecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHH
Q 021156 145 DNSLSYIEEGATHVIV--TSYV-----FNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDE 217 (316)
Q Consensus 145 e~~~~~l~~Gad~VVi--gt~~-----~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e 217 (316)
++++++.+.|...+=+ |.-. ..+..-+.+.++.+.+.+|+ .+.+.+|+. .+|... +..+
T Consensus 130 ~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~~g~-~~~l~vDaN----------~~w~~~---~A~~ 195 (382)
T PRK14017 130 EAARARVERGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVGP-EIGIGVDFH----------GRVHKP---MAKV 195 (382)
T ss_pred HHHHHHHHcCCCEEEEcCcCCccccccHHHHHHHHHHHHHHHHHhCC-CCeEEEECC----------CCCCHH---HHHH
Confidence 4567777889776544 2100 00001137889999999985 567889983 346432 3556
Q ss_pred HHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156 218 RVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN 297 (316)
Q Consensus 218 ~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~ 297 (316)
+++.+.+.++..+ . .=..-.|++.++++++.+++||.+.=-+.+..|+.++.+.+ .++.+.+--.. .+|-
T Consensus 196 ~~~~l~~~~~~~i-----E--eP~~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~-a~d~v~~d~~~--~GGi 265 (382)
T PRK14017 196 LAKELEPYRPMFI-----E--EPVLPENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAG-GVDIIQPDLSH--AGGI 265 (382)
T ss_pred HHHhhcccCCCeE-----E--CCCCcCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcC-CCCeEecCccc--cCCH
Confidence 6677766665532 1 11122378889999999999988777788999999999987 35555555444 5565
Q ss_pred ccHHHHHHHHHhhc
Q 021156 298 LAYKDVVAWHAQQE 311 (316)
Q Consensus 298 ~~~~~~~~~~~~~~ 311 (316)
....++.+++.+..
T Consensus 266 t~~~~ia~~A~~~g 279 (382)
T PRK14017 266 TECRKIAAMAEAYD 279 (382)
T ss_pred HHHHHHHHHHHHcC
Confidence 55666666666543
No 461
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=92.16 E-value=0.58 Score=43.64 Aligned_cols=66 Identities=27% Similarity=0.248 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhC--CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeee
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAY--PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVF 165 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~--~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~ 165 (316)
+.. -++...+.|++ ++-||.- ....+.++++.. .+|+.+-|||+.+.+..+.++|+|.+.+|+...
T Consensus 187 t~e-ea~~A~~~gaD---yI~ld~~--~~e~lk~~v~~~~~~ipi~AsGGI~~~ni~~~a~~Gvd~Isvgait~ 254 (265)
T TIGR00078 187 SLE-EAEEAAEAGAD---IIMLDNM--KPEEIKEAVQLLKGRVLLEASGGITLDNLEEYAETGVDVISSGALTH 254 (265)
T ss_pred CHH-HHHHHHHcCCC---EEEECCC--CHHHHHHHHHHhcCCCcEEEECCCCHHHHHHHHHcCCCEEEeCHHHc
Confidence 454 45556678887 5555542 335555655543 389999999999999999999999999976655
No 462
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=92.15 E-value=0.37 Score=47.47 Aligned_cols=73 Identities=16% Similarity=0.050 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCc-------------cc---HHHHHHHHHh----CCCcEEEecCCCH-HHHHHHHH
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADP-------------LS---KAAAIEALHA----YPGGLQVGGGINS-DNSLSYIE 152 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~-------------~~---~~~i~~~v~~----~~~pl~vGGGIr~-e~~~~~l~ 152 (316)
++.++++.....|++.+.+---+++. +. ...+.+.+.. ..+||+..|||++ .|+.+++.
T Consensus 226 ~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kala 305 (392)
T cd02808 226 GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALA 305 (392)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHH
Confidence 67788888877777755543333221 00 1112222222 2589999999995 99999999
Q ss_pred cCCCEEEeCCeeec
Q 021156 153 EGATHVIVTSYVFN 166 (316)
Q Consensus 153 ~Gad~VVigt~~~~ 166 (316)
.|||.|-+|+.++.
T Consensus 306 LGAd~V~ig~~~l~ 319 (392)
T cd02808 306 LGADAVGIGTAALI 319 (392)
T ss_pred cCCCeeeechHHHH
Confidence 99999999998765
No 463
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.13 E-value=5.2 Score=39.94 Aligned_cols=155 Identities=14% Similarity=0.067 Sum_probs=89.9
Q ss_pred HHHHHHHHH-HcCCCcceEEEecCCcc-cHHHHHHHHHhCCCcEEEecCC-CHHH-----HHHHHHcCCCEEEeCCeeec
Q 021156 95 AAEFANLYK-EDGLTGGHAIMLGADPL-SKAAAIEALHAYPGGLQVGGGI-NSDN-----SLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 95 p~e~a~~~~-~~G~~~l~lvDLda~~~-~~~~i~~~v~~~~~pl~vGGGI-r~e~-----~~~~l~~Gad~VVigt~~~~ 166 (316)
...+|..+. +.| ..+.++|.|--.+ ....+.......++|+...+.- ...+ ++.+...+.|.|+++|.-+.
T Consensus 116 aakLA~~l~~~~g-~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 116 CGKLAYYLKKKQG-KKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHHHHHHHHHhCC-CeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 456777765 345 4678888884321 2233334445577888775542 2322 23344678999999999754
Q ss_pred CCCCCHHHHHHHHHH---hcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHH-HcCCCEEEEeecCCccccC
Q 021156 167 NGQMDLERLKDLVRV---VGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFL-ASYADEFLVHGVDVEGKKL 242 (316)
Q Consensus 167 ~~~~~~eli~ei~~~---~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~-~~Ga~~ilvtdi~~dG~~~ 242 (316)
. .+..++.++.+. ..++.+++-+|.. ++.+..+.++.+. ..++..+++|-+|.+-. .
T Consensus 195 ~--~d~~l~~eL~~i~~~~~p~e~lLVvda~----------------tgq~~~~~a~~f~~~v~i~giIlTKlD~~~~-~ 255 (428)
T TIGR00959 195 Q--IDEELMEELAAIKEILNPDEILLVVDAM----------------TGQDAVNTAKTFNERLGLTGVVLTKLDGDAR-G 255 (428)
T ss_pred c--cCHHHHHHHHHHHHhhCCceEEEEEecc----------------chHHHHHHHHHHHhhCCCCEEEEeCccCccc-c
Confidence 1 135666666443 2233344444432 1235677788776 46899999998765422 2
Q ss_pred CCCHHHHHHHhhcCCCcEEEEeCCCCHHHHH
Q 021156 243 GIDDELVALLGKYSPIPVTYAGGVTTMADLE 273 (316)
Q Consensus 243 G~d~eli~~l~~~~~iPVIasGGI~s~eDi~ 273 (316)
|. +..+...+++||.+-|-=...+|+.
T Consensus 256 G~----~lsi~~~~~~PI~fi~~Ge~i~dl~ 282 (428)
T TIGR00959 256 GA----ALSVRSVTGKPIKFIGVGEKIDDLE 282 (428)
T ss_pred cH----HHHHHHHHCcCEEEEeCCCChhhCc
Confidence 22 3455556678987766434455543
No 464
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=92.12 E-value=3.5 Score=39.60 Aligned_cols=154 Identities=17% Similarity=0.102 Sum_probs=94.3
Q ss_pred CCcEEEec-CCC-H----HHHHHHHHcCCCEEEe--CCeee---cCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeE
Q 021156 133 PGGLQVGG-GIN-S----DNSLSYIEEGATHVIV--TSYVF---NNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYA 201 (316)
Q Consensus 133 ~~pl~vGG-GIr-~----e~~~~~l~~Gad~VVi--gt~~~---~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~ 201 (316)
.+|+...+ +.. . ++++++.+.|...+=+ |.... .+.+.+.+.++.+.+.+|+ .+-+.+|+.
T Consensus 108 ~i~~y~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v~avr~~~g~-~~~l~vDan------- 179 (341)
T cd03327 108 KIPAYASGLYPTDLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELVRAIREAVGY-DVDLMLDCY------- 179 (341)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHHHHHHHHhCC-CCcEEEECC-------
Confidence 35665443 343 2 4567778889875543 32100 0001137889999999984 566888873
Q ss_pred EEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCC
Q 021156 202 IVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIG 281 (316)
Q Consensus 202 v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g 281 (316)
.+|... +...+++.+.+.++..+ +.=..-.|++.++++++.+++||.+.=-+.+..++.++.+.+ .
T Consensus 180 ---~~~~~~---~A~~~~~~l~~~~~~~i-------EeP~~~~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~-a 245 (341)
T cd03327 180 ---MSWNLN---YAIKMARALEKYELRWI-------EEPLIPDDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGR-A 245 (341)
T ss_pred ---CCCCHH---HHHHHHHHhhhcCCccc-------cCCCCccCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcC-C
Confidence 245432 35566677777665422 112233478899999999999977665678999999999987 3
Q ss_pred cCEEEEccchhhccCcccHHHHHHHHHhh
Q 021156 282 RVDVTVGSALDIFGGNLAYKDVVAWHAQQ 310 (316)
Q Consensus 282 ~~gVivG~Al~~~~g~~~~~~~~~~~~~~ 310 (316)
++.+.+--.- .+|-....++.+++.+.
T Consensus 246 ~d~i~~d~~~--~GGit~~~~i~~~A~~~ 272 (341)
T cd03327 246 VDILQPDVNW--VGGITELKKIAALAEAY 272 (341)
T ss_pred CCEEecCccc--cCCHHHHHHHHHHHHHc
Confidence 5555554444 44544455565555554
No 465
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=92.08 E-value=13 Score=36.43 Aligned_cols=199 Identities=19% Similarity=0.088 Sum_probs=104.2
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEEecCCC--HHHHHHHHHcCCCEEEeCCeeec---C
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGIN--SDNSLSYIEEGATHVIVTSYVFN---N 167 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~vGGGIr--~e~~~~~l~~Gad~VVigt~~~~---~ 167 (316)
.+-+++++.+.+.|++.+-+-.-... ....+.++.+.+...+..+-+=.| .++++.++++|++.|-+-...-+ .
T Consensus 26 e~k~~ia~~L~~~GV~~IE~G~p~~~-~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~h~~ 104 (378)
T PRK11858 26 EEKLAIARMLDEIGVDQIEAGFPAVS-EDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCGVDAVHIFIATSDIHIK 104 (378)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCcC-hHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCEEEEEEcCCHHHHH
Confidence 45668999999999775544211111 112133344433233233332234 58899999999998665322111 0
Q ss_pred ---CCC---CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc
Q 021156 168 ---GQM---DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK 241 (316)
Q Consensus 168 ---~~~---~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~ 241 (316)
++. ..+.+.+..+..-.....+.+.+- + .... ..-.+.++++.+.+.|+++|.+-| ..|.+
T Consensus 105 ~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~e--d--------~~r~-~~~~l~~~~~~~~~~Ga~~I~l~D--T~G~~ 171 (378)
T PRK11858 105 HKLKKTREEVLERMVEAVEYAKDHGLYVSFSAE--D--------ASRT-DLDFLIEFAKAAEEAGADRVRFCD--TVGIL 171 (378)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEec--c--------CCCC-CHHHHHHHHHHHHhCCCCEEEEec--cCCCC
Confidence 000 013333333322111112222221 1 1111 112467888999999999876554 44776
Q ss_pred CCCCH-HHHHHHhhcCCCcEEEEeC----CCCHHHHHHHHHhCC-CcCEEEEccchhhccCcccHHHHHHHHH
Q 021156 242 LGIDD-ELVALLGKYSPIPVTYAGG----VTTMADLEKIKVAGI-GRVDVTVGSALDIFGGNLAYKDVVAWHA 308 (316)
Q Consensus 242 ~G~d~-eli~~l~~~~~iPVIasGG----I~s~eDi~~l~~~G~-g~~gVivG~Al~~~~g~~~~~~~~~~~~ 308 (316)
..... ++++.+++..++|+-+-+. .....-+ .+.+.|. -+++-+-|-+= -.|+..+++++..++
T Consensus 172 ~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~AN~l-aAv~aGa~~vd~tv~GlGe--raGNa~lE~vv~~L~ 241 (378)
T PRK11858 172 DPFTMYELVKELVEAVDIPIEVHCHNDFGMATANAL-AGIEAGAKQVHTTVNGLGE--RAGNAALEEVVMALK 241 (378)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEecCCcCHHHHHHH-HHHHcCCCEEEEeeccccc--cccCccHHHHHHHHH
Confidence 65544 4777887776788766553 3333333 3345663 24444545433 347788888877665
No 466
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.07 E-value=7.7 Score=36.18 Aligned_cols=157 Identities=14% Similarity=0.059 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCc-ccHHHHHHHHHhCCCcEEEecCC-CH-----HHHHHHHHcCCCEEEeCCeeec
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLGADP-LSKAAAIEALHAYPGGLQVGGGI-NS-----DNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLda~~-~~~~~i~~~v~~~~~pl~vGGGI-r~-----e~~~~~l~~Gad~VVigt~~~~ 166 (316)
....+|..+.+.| ..+.++|.|--. .....+....+..++|+...+.- .. +.++.+...++|.|+|+|.-+.
T Consensus 88 t~akLA~~l~~~g-~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~~~D~ViIDT~G~~ 166 (272)
T TIGR00064 88 TIAKLANKLKKQG-KSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVVLIDTAGRL 166 (272)
T ss_pred HHHHHHHHHHhcC-CEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 4567888887776 578889988432 12334444455566776543322 22 2234455688999999998754
Q ss_pred CCCCCHHHHHHHHHHh---c------CceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHH-HcCCCEEEEeecC
Q 021156 167 NGQMDLERLKDLVRVV---G------KQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFL-ASYADEFLVHGVD 236 (316)
Q Consensus 167 ~~~~~~eli~ei~~~~---G------~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~-~~Ga~~ilvtdi~ 236 (316)
. .+..++.++.+.. . ++.+++-+|.. . +.+..+.+..+. ..+...+++|-+|
T Consensus 167 ~--~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~-------------~---~~~~~~~~~~f~~~~~~~g~IlTKlD 228 (272)
T TIGR00064 167 Q--NKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT-------------T---GQNALEQAKVFNEAVGLTGIILTKLD 228 (272)
T ss_pred c--chHHHHHHHHHHHHHHhcccCCCCceEEEEEECC-------------C---CHHHHHHHHHHHhhCCCCEEEEEccC
Confidence 2 1355555554422 1 23344444432 1 112345556655 4789999999987
Q ss_pred CccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHH
Q 021156 237 VEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEK 274 (316)
Q Consensus 237 ~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~ 274 (316)
.+.+ .|.-++... ..++|+.+-|-=..++|+..
T Consensus 229 e~~~-~G~~l~~~~----~~~~Pi~~~~~Gq~~~dl~~ 261 (272)
T TIGR00064 229 GTAK-GGIILSIAY----ELKLPIKFIGVGEKIDDLAP 261 (272)
T ss_pred CCCC-ccHHHHHHH----HHCcCEEEEeCCCChHhCcc
Confidence 6533 344444333 34689877775455777754
No 467
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=92.04 E-value=1.2 Score=40.85 Aligned_cols=175 Identities=16% Similarity=0.116 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHcCCCcceEEEec-----C----CcccHHH----HHHHHHhCCCcEEEec----C--C-CH-HHHHHHHH
Q 021156 94 SAAEFANLYKEDGLTGGHAIMLG-----A----DPLSKAA----AIEALHAYPGGLQVGG----G--I-NS-DNSLSYIE 152 (316)
Q Consensus 94 ~p~e~a~~~~~~G~~~l~lvDLd-----a----~~~~~~~----i~~~v~~~~~pl~vGG----G--I-r~-e~~~~~l~ 152 (316)
|+. -|+..+++|++.++.--.. | ......+ +.++++.+++|+++++ | . +. +.++++.+
T Consensus 18 D~~-SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~tv~~~~~ 96 (238)
T PF13714_consen 18 DAL-SARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAVSIPVIVDADTGYGNDPENVARTVRELER 96 (238)
T ss_dssp SHH-HHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHHHHHHHHHHH
T ss_pred CHH-HHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhcCcEEEEcccccCchhHHHHHHHHHHHH
Confidence 676 7788888888754432111 0 0112333 3344456889999963 2 2 23 66999999
Q ss_pred cCCCEEEeCCee--ecCCC-CCH-HHHHHHHHH---hcCce--EEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHH
Q 021156 153 EGATHVIVTSYV--FNNGQ-MDL-ERLKDLVRV---VGKQR--LVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFL 223 (316)
Q Consensus 153 ~Gad~VVigt~~--~~~~~-~~~-eli~ei~~~---~G~~~--IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~ 223 (316)
+|+.-+.|--.. ..+++ +++ +++.++... -.... |+.-.|... .....--+.++.++.+.
T Consensus 97 aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~-----------~~~~~~deaI~R~~aY~ 165 (238)
T PF13714_consen 97 AGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFL-----------RAEEGLDEAIERAKAYA 165 (238)
T ss_dssp CT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHC-----------HHHHHHHHHHHHHHHHH
T ss_pred cCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccc-----------cCCCCHHHHHHHHHHHH
Confidence 999999884431 11111 122 333343322 21111 222222210 00111124678899999
Q ss_pred HcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 224 ASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 224 ~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
+.|++.+.++.+. +.+.++++.+.++.|+.+.-+ ...-++.+|.++| +..|+.|..+
T Consensus 166 eAGAD~ifi~~~~--------~~~~i~~~~~~~~~Pl~v~~~-~~~~~~~eL~~lG--v~~v~~~~~~ 222 (238)
T PF13714_consen 166 EAGADMIFIPGLQ--------SEEEIERIVKAVDGPLNVNPG-PGTLSAEELAELG--VKRVSYGNSL 222 (238)
T ss_dssp HTT-SEEEETTSS--------SHHHHHHHHHHHSSEEEEETT-SSSS-HHHHHHTT--ESEEEETSHH
T ss_pred HcCCCEEEeCCCC--------CHHHHHHHHHhcCCCEEEEcC-CCCCCHHHHHHCC--CcEEEEcHHH
Confidence 9999998877763 345688888777899887775 3337889999999 8989999877
No 468
>PLN02979 glycolate oxidase
Probab=92.04 E-value=0.43 Score=46.49 Aligned_cols=70 Identities=20% Similarity=0.186 Sum_probs=48.5
Q ss_pred HHHHHHHHcCCCcceEEEecCCc-----ccHHHHHHHHHhC--CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeec
Q 021156 97 EFANLYKEDGLTGGHAIMLGADP-----LSKAAAIEALHAY--PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvDLda~~-----~~~~~i~~~v~~~--~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~ 166 (316)
+-|+...+.|++++.+-.-.+.. .....+.++.+.+ .+||+++||||. .|+-+++..||+.|-+|..++.
T Consensus 235 ~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L~ 312 (366)
T PLN02979 235 EDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF 312 (366)
T ss_pred HHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 46777778898866443332221 1122333333433 489999999995 9999999999999999987763
No 469
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=92.01 E-value=2.4 Score=40.89 Aligned_cols=143 Identities=15% Similarity=0.129 Sum_probs=87.6
Q ss_pred HHHHHHHHcCCCE--EEeCCeee-----cCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHH
Q 021156 145 DNSLSYIEEGATH--VIVTSYVF-----NNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDE 217 (316)
Q Consensus 145 e~~~~~l~~Gad~--VVigt~~~-----~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e 217 (316)
++++++.+.|... +=+|...- .+.+-+.+.++.+.+.+|+ .+.+.+|+. .+|... ...+
T Consensus 129 ~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~-~~~l~vDaN----------~~~~~~---~A~~ 194 (352)
T cd03325 129 EAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVGP-DIDIGVDFH----------GRVSKP---MAKD 194 (352)
T ss_pred HHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCC-CCEEEEECC----------CCCCHH---HHHH
Confidence 3456667788774 43453100 0001137889999999974 567889973 245421 2455
Q ss_pred HHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156 218 RVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN 297 (316)
Q Consensus 218 ~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~ 297 (316)
+++.+.+.++..+ . .=+.-.|++.++++++.+++||.+.=-+.+.+++.++.+.+ .++.+.+--.. .+|-
T Consensus 195 ~~~~l~~~~i~~i-----E--eP~~~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~-~~d~v~~d~~~--~GGi 264 (352)
T cd03325 195 LAKELEPYRLLFI-----E--EPVLPENVEALAEIAARTTIPIATGERLFSRWDFKELLEDG-AVDIIQPDISH--AGGI 264 (352)
T ss_pred HHHhccccCCcEE-----E--CCCCccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhC-CCCEEecCccc--cCCH
Confidence 6666666554432 1 11222378899999998999966655577999999999887 35555554444 4555
Q ss_pred ccHHHHHHHHHhhc
Q 021156 298 LAYKDVVAWHAQQE 311 (316)
Q Consensus 298 ~~~~~~~~~~~~~~ 311 (316)
-...++.+++.++.
T Consensus 265 t~~~~~~~lA~~~g 278 (352)
T cd03325 265 TELKKIAAMAEAYD 278 (352)
T ss_pred HHHHHHHHHHHHcC
Confidence 55556666665544
No 470
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=91.97 E-value=13 Score=36.20 Aligned_cols=198 Identities=20% Similarity=0.127 Sum_probs=104.0
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEEecCCC--HHHHHHHHHcCCCEEEeCCeeec---C
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGIN--SDNSLSYIEEGATHVIVTSYVFN---N 167 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~vGGGIr--~e~~~~~l~~Gad~VVigt~~~~---~ 167 (316)
.+-+++++.+.+.|++.+-+-.-...+ ...+.++.+.+...+..+-+=.| .++++.++++|++.|-+-...-+ .
T Consensus 23 ~~k~~ia~~L~~~Gv~~IEvG~p~~~~-~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~ 101 (365)
T TIGR02660 23 AEKLAIARALDEAGVDELEVGIPAMGE-EERAVIRAIVALGLPARLMAWCRARDADIEAAARCGVDAVHISIPVSDLQIE 101 (365)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCH-HHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEEEEEEccCHHHHH
Confidence 455689999999997755553211111 12233344433222223333334 58999999999997655322110 0
Q ss_pred ---CCC---CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc
Q 021156 168 ---GQM---DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK 241 (316)
Q Consensus 168 ---~~~---~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~ 241 (316)
++. ..+.+.+.++..-.....+.+.+- + .... ..-.+.++++.+.+.|++.|.+- |..|.+
T Consensus 102 ~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~e--d--------~~r~-~~~~l~~~~~~~~~~Ga~~i~l~--DT~G~~ 168 (365)
T TIGR02660 102 AKLRKDRAWVLERLARLVSFARDRGLFVSVGGE--D--------ASRA-DPDFLVELAEVAAEAGADRFRFA--DTVGIL 168 (365)
T ss_pred HHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeec--C--------CCCC-CHHHHHHHHHHHHHcCcCEEEEc--ccCCCC
Confidence 000 012222333222111112233221 1 1111 11246778888999999987544 455766
Q ss_pred CCCCH-HHHHHHhhcCCCcEEEEeC----CCCHHHHHHHHHhCC-CcCEEEEccchhhccCcccHHHHHHHH
Q 021156 242 LGIDD-ELVALLGKYSPIPVTYAGG----VTTMADLEKIKVAGI-GRVDVTVGSALDIFGGNLAYKDVVAWH 307 (316)
Q Consensus 242 ~G~d~-eli~~l~~~~~iPVIasGG----I~s~eDi~~l~~~G~-g~~gVivG~Al~~~~g~~~~~~~~~~~ 307 (316)
..... ++++.+++..++|+-+-+. ....+-+ .+.+.|+ -+++.+-|-+= -.|+.++++++..+
T Consensus 169 ~P~~v~~lv~~l~~~~~v~l~~H~HNd~GlA~ANal-aA~~aGa~~vd~tl~GiGe--raGN~~lE~lv~~L 237 (365)
T TIGR02660 169 DPFSTYELVRALRQAVDLPLEMHAHNDLGMATANTL-AAVRAGATHVNTTVNGLGE--RAGNAALEEVAMAL 237 (365)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHH-HHHHhCCCEEEEEeecccc--ccccCCHHHHHHHH
Confidence 65543 4788887777778766553 3333333 3345673 24555665554 45788899888776
No 471
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=91.93 E-value=2.3 Score=38.03 Aligned_cols=108 Identities=20% Similarity=0.253 Sum_probs=62.6
Q ss_pred HHHHHHHHHcCCCEEEeCCeeecCC-CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156 144 SDNSLSYIEEGATHVIVTSYVFNNG-QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF 222 (316)
Q Consensus 144 ~e~~~~~l~~Gad~VVigt~~~~~~-~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~ 222 (316)
.+++..+.+.||||+=+-+.....| ...+.+++.+.+... -.+.+.|=.| .|. .+++. ..-....+.++.+
T Consensus 10 ~~~a~~A~~~GAdRiELc~~l~~GGlTPS~g~i~~~~~~~~-ipv~vMIRpr--~gd-F~Ys~----~E~~~M~~dI~~~ 81 (201)
T PF03932_consen 10 LEDALAAEAGGADRIELCSNLEVGGLTPSLGLIRQAREAVD-IPVHVMIRPR--GGD-FVYSD----EEIEIMKEDIRML 81 (201)
T ss_dssp HHHHHHHHHTT-SEEEEEBTGGGT-B---HHHHHHHHHHTT-SEEEEE--SS--SS--S---H----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEECCCccCCCcCcCHHHHHHHHhhcC-CceEEEECCC--CCC-ccCCH----HHHHHHHHHHHHH
Confidence 5889999999999998766444433 224678888887653 3455555433 332 22211 0001255678889
Q ss_pred HHcCCCEEEEeecCCccccCCCCHHHHHHHhhc-CCCcEEE
Q 021156 223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKY-SPIPVTY 262 (316)
Q Consensus 223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~-~~iPVIa 262 (316)
.+.|++.+++--.+.||+ .|.+.++++.+. -+.|++.
T Consensus 82 ~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~~tF 119 (201)
T PF03932_consen 82 RELGADGFVFGALTEDGE---IDEEALEELIEAAGGMPVTF 119 (201)
T ss_dssp HHTT-SEEEE--BETTSS---B-HHHHHHHHHHHTTSEEEE
T ss_pred HHcCCCeeEEEeECCCCC---cCHHHHHHHHHhcCCCeEEE
Confidence 999999999877788876 688888877653 3555554
No 472
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=91.89 E-value=11 Score=35.11 Aligned_cols=196 Identities=11% Similarity=0.018 Sum_probs=110.9
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCCcc---------cHHHHHHHHHhC--CCcEEE--ecCC-CHHHHHHHHHcCCCEE
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGADPL---------SKAAAIEALHAY--PGGLQV--GGGI-NSDNSLSYIEEGATHV 158 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~---------~~~~i~~~v~~~--~~pl~v--GGGI-r~e~~~~~l~~Gad~V 158 (316)
..-.++++.+.++|++.+-+=.....+. ..+.+.++.+.. +.++.+ -.+. ..++++.+.+.|++.|
T Consensus 20 ~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gv~~i 99 (266)
T cd07944 20 EFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSVVDMI 99 (266)
T ss_pred HHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCCcCEE
Confidence 4566788888888877665554433211 234444444322 333322 2222 2478999999999987
Q ss_pred EeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCc
Q 021156 159 IVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVE 238 (316)
Q Consensus 159 Vigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~d 238 (316)
-+.... ++ .+.+.+..+........+.+..- ...++. .-.+.++++.+.+.|++.|.+-| .-
T Consensus 100 ri~~~~-~~----~~~~~~~i~~ak~~G~~v~~~~~--------~a~~~~---~~~~~~~~~~~~~~g~~~i~l~D--T~ 161 (266)
T cd07944 100 RVAFHK-HE----FDEALPLIKAIKEKGYEVFFNLM--------AISGYS---DEELLELLELVNEIKPDVFYIVD--SF 161 (266)
T ss_pred EEeccc-cc----HHHHHHHHHHHHHCCCeEEEEEE--------eecCCC---HHHHHHHHHHHHhCCCCEEEEec--CC
Confidence 776533 22 55555555543211122222221 112222 12467889999999999875544 55
Q ss_pred cccCCCCH-HHHHHHhhcCC--CcEEEEeC----CCCHHHHHHHHHhCC-CcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156 239 GKKLGIDD-ELVALLGKYSP--IPVTYAGG----VTTMADLEKIKVAGI-GRVDVTVGSALDIFGGNLAYKDVVAWHAQ 309 (316)
Q Consensus 239 G~~~G~d~-eli~~l~~~~~--iPVIasGG----I~s~eDi~~l~~~G~-g~~gVivG~Al~~~~g~~~~~~~~~~~~~ 309 (316)
|.+...+. ++++.+++..+ +|+-+-+. .....- ....+.|. -+++-+-|-+= -.|+.+.++++..++.
T Consensus 162 G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~-laA~~aGa~~vd~s~~G~G~--~aGN~~~E~~v~~l~~ 237 (266)
T cd07944 162 GSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANT-LEAIELGVEIIDATVYGMGR--GAGNLPTELLLDYLNN 237 (266)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHH-HHHHHcCCCEEEEecccCCC--CcCcHHHHHHHHHHHH
Confidence 77776654 47778877665 78766554 222322 33345663 24555555444 4578888888776654
No 473
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.85 E-value=1 Score=42.66 Aligned_cols=67 Identities=18% Similarity=0.224 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHh--CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156 96 AEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA--YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN 167 (316)
Q Consensus 96 ~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~ 167 (316)
++-++...++|++ ++-||.- ..+.+.++++. -.+.+.+.|||+.+.+..|...|+|.+++|+..+.-
T Consensus 215 leea~eA~~aGaD---iImLDnm--spe~l~~av~~~~~~~~lEaSGGIt~~ni~~yA~tGVD~IS~galthsa 283 (294)
T PRK06978 215 LAQLETALAHGAQ---SVLLDNF--TLDMMREAVRVTAGRAVLEVSGGVNFDTVRAFAETGVDRISIGALTKDV 283 (294)
T ss_pred HHHHHHHHHcCCC---EEEECCC--CHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHhcCCCEEEeCccccCC
Confidence 3466666678876 7777752 34555555543 246799999999999999999999999999987763
No 474
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=91.84 E-value=3.2 Score=40.79 Aligned_cols=140 Identities=16% Similarity=0.139 Sum_probs=91.0
Q ss_pred HHHHHHHHcCCCEEE--eCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156 145 DNSLSYIEEGATHVI--VTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF 222 (316)
Q Consensus 145 e~~~~~l~~Gad~VV--igt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~ 222 (316)
++++++.+.|...+= +|....+. +.+.++.+.+.+|+ .+-+.+|+. .+|... ....+++.+
T Consensus 166 ~~a~~~~~~Gf~~~Kikvg~~~~~~---di~~v~avRe~~G~-~~~l~vDaN----------~~w~~~---~A~~~~~~l 228 (385)
T cd03326 166 DEMRRYLDRGYTVVKIKIGGAPLDE---DLRRIEAALDVLGD-GARLAVDAN----------GRFDLE---TAIAYAKAL 228 (385)
T ss_pred HHHHHHHHCCCCEEEEeCCCCCHHH---HHHHHHHHHHhcCC-CCeEEEECC----------CCCCHH---HHHHHHHHh
Confidence 456777888977543 44322221 37889999999985 567888873 246432 356677777
Q ss_pred HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCc----CEEEEccchhhccCcc
Q 021156 223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGR----VDVTVGSALDIFGGNL 298 (316)
Q Consensus 223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~----~gVivG~Al~~~~g~~ 298 (316)
.+.++..+ +.=...-|++.++++++.+++||.+.=-+.+..++.++++.+. + +.+-+=-+- .+|-.
T Consensus 229 ~~~~~~~i-------EeP~~~~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a-~~~~~div~~d~~~--~GGit 298 (385)
T cd03326 229 APYGLRWY-------EEPGDPLDYALQAELADHYDGPIATGENLFSLQDARNLLRYGG-MRPDRDVLQFDPGL--SYGLP 298 (385)
T ss_pred hCcCCCEE-------ECCCCccCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCC-ccccCCEEEeCchh--hCCHH
Confidence 77665533 1111223789999999999999888777889999999999872 3 444444333 45544
Q ss_pred cHHHHHHHHHhhc
Q 021156 299 AYKDVVAWHAQQE 311 (316)
Q Consensus 299 ~~~~~~~~~~~~~ 311 (316)
...++.+.+.++.
T Consensus 299 ~~~kia~lA~a~g 311 (385)
T cd03326 299 EYLRMLDVLEAHG 311 (385)
T ss_pred HHHHHHHHHHHcC
Confidence 5556655555543
No 475
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=91.84 E-value=0.69 Score=41.51 Aligned_cols=51 Identities=22% Similarity=0.237 Sum_probs=40.7
Q ss_pred HHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHH
Q 021156 124 AAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLV 179 (316)
Q Consensus 124 ~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~ 179 (316)
.+.+.+.+.+.+++.-|.++ .+++++.++.||+-|++|++.-+ |+.+.++.
T Consensus 171 ~lvk~l~~~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITR-----p~~It~~F 222 (229)
T COG3010 171 QLVKQLSDAGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITR-----PEEITQWF 222 (229)
T ss_pred HHHHHHHhCCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCC-----HHHHHHHH
Confidence 34444555889999999998 59999999999999999998655 76665543
No 476
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=91.84 E-value=8.8 Score=37.42 Aligned_cols=162 Identities=13% Similarity=0.097 Sum_probs=100.2
Q ss_pred HHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCee
Q 021156 122 KAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKY 200 (316)
Q Consensus 122 ~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~ 200 (316)
...+.+.+++.++|+.. =+. .++++.+.+. +|.+=||+....| .++++++.+. | .-|++ + .|.
T Consensus 171 l~~L~~~~~~~Gl~~~t--~v~d~~~~~~l~~~-vd~lkI~s~~~~n----~~LL~~~a~~-g-kPVil----k--~G~- 234 (360)
T PRK12595 171 LKILKQVADEYGLAVIS--EIVNPADVEVALDY-VDVIQIGARNMQN----FELLKAAGRV-N-KPVLL----K--RGL- 234 (360)
T ss_pred HHHHHHHHHHcCCCEEE--eeCCHHHHHHHHHh-CCeEEECcccccC----HHHHHHHHcc-C-CcEEE----e--CCC-
Confidence 34556666778888776 344 5788888888 9999999999997 8898888753 3 12222 2 120
Q ss_pred EEEeCCcceecccCHHHHHHHHHHcCCCEEEE-e-ecCCcc--ccCCCCHHHHHHHhhcCCCcEEE-EeCCCC---HH--
Q 021156 201 AIVTDRWQKFSDVYLDERVLDFLASYADEFLV-H-GVDVEG--KKLGIDDELVALLGKYSPIPVTY-AGGVTT---MA-- 270 (316)
Q Consensus 201 ~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilv-t-di~~dG--~~~G~d~eli~~l~~~~~iPVIa-sGGI~s---~e-- 270 (316)
+ .+--+....+..+.+.|...+++ | .++.=. +..-.|+..+..+++..++||++ +..... ..
T Consensus 235 ------~--~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~~~PV~~d~~Hs~G~r~~~~~ 306 (360)
T PRK12595 235 ------S--ATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQETHLPVMVDVTHSTGRRDLLLP 306 (360)
T ss_pred ------C--CCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHhCCCEEEeCCCCCcchhhHHH
Confidence 0 01113444566677788866654 4 443211 12335899999999888999999 655443 22
Q ss_pred HHHHHHHhCCCcCEEEEcc------chhhccCcccHHHHHHHHHh
Q 021156 271 DLEKIKVAGIGRVDVTVGS------ALDIFGGNLAYKDVVAWHAQ 309 (316)
Q Consensus 271 Di~~l~~~G~g~~gVivG~------Al~~~~g~~~~~~~~~~~~~ 309 (316)
-...+..+| ++|.++-+ +..-+...++++++.+++.+
T Consensus 307 ~a~aAva~G--Adg~~iE~H~dp~~a~~D~~~sl~p~el~~l~~~ 349 (360)
T PRK12595 307 TAKAALAIG--ADGVMAEVHPDPAVALSDSAQQMDIPEFDRFLDE 349 (360)
T ss_pred HHHHHHHcC--CCeEEEEecCCCCCCCCchhhhCCHHHHHHHHHH
Confidence 223344556 89999874 22111234677777776654
No 477
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=91.83 E-value=3.8 Score=39.42 Aligned_cols=136 Identities=14% Similarity=0.056 Sum_probs=86.0
Q ss_pred HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH
Q 021156 145 DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA 224 (316)
Q Consensus 145 e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~ 224 (316)
+++.++.+.|...+=+-..... +.+.++.+.+.+| .+-+.+|+. .+|.... . ..++.+.+
T Consensus 143 ~~~~~~~~~Gf~~~KiKv~~~~----d~~~l~~vr~~~g--~~~l~lDaN----------~~~~~~~---a-~~~~~l~~ 202 (354)
T cd03317 143 KQIERYLEEGYKRIKLKIKPGW----DVEPLKAVRERFP--DIPLMADAN----------SAYTLAD---I-PLLKRLDE 202 (354)
T ss_pred HHHHHHHHcCCcEEEEecChHH----HHHHHHHHHHHCC--CCeEEEECC----------CCCCHHH---H-HHHHHhhc
Confidence 4577777888765422111123 3889999999887 577889983 3565321 2 34566666
Q ss_pred cCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156 225 SYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV 304 (316)
Q Consensus 225 ~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~ 304 (316)
.++..+ . .=..-.|++.++++++.+++||.+.=-+.+.+|+.++.+.+ .++.+.+--+. .+|-....++.
T Consensus 203 ~~i~~i-----E--eP~~~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~-~~d~~~ik~~~--~GGit~~~~i~ 272 (354)
T cd03317 203 YGLLMI-----E--QPLAADDLIDHAELQKLLKTPICLDESIQSAEDARKAIELG-ACKIINIKPGR--VGGLTEALKIH 272 (354)
T ss_pred CCccEE-----E--CCCChhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcC-CCCEEEecccc--cCCHHHHHHHH
Confidence 554322 1 11222367888999988899987766689999999999987 35655555444 45545555666
Q ss_pred HHHHhh
Q 021156 305 AWHAQQ 310 (316)
Q Consensus 305 ~~~~~~ 310 (316)
+++++.
T Consensus 273 ~~A~~~ 278 (354)
T cd03317 273 DLCQEH 278 (354)
T ss_pred HHHHHc
Confidence 555553
No 478
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=91.83 E-value=0.96 Score=42.88 Aligned_cols=66 Identities=18% Similarity=0.190 Sum_probs=50.7
Q ss_pred HHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHh--CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156 96 AEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA--YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 96 ~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~ 166 (316)
++-+....++|++ ++-||.- ..+.+.++++. -.+.+.+-|||+.+.+..|.+.|+|.+++|+..+.
T Consensus 218 leea~ea~~~gaD---iI~LDn~--s~e~~~~av~~~~~~~~ieaSGGI~~~ni~~yA~tGVD~Is~galths 285 (296)
T PRK09016 218 LDELDQALKAGAD---IIMLDNF--TTEQMREAVKRTNGRALLEVSGNVTLETLREFAETGVDFISVGALTKH 285 (296)
T ss_pred HHHHHHHHHcCCC---EEEeCCC--ChHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHhcCCCEEEeCccccC
Confidence 4566666677875 6777743 34556666653 35789999999999999999999999999997765
No 479
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=91.83 E-value=2.1 Score=40.43 Aligned_cols=71 Identities=10% Similarity=0.186 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhc-----CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEcc
Q 021156 215 LDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKY-----SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGS 289 (316)
Q Consensus 215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~-----~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~ 289 (316)
..+.++++.+.|++.|.+-. .+.+.+++..+. .++.+.+||||. ++.+.++.+.| ++.+++|.
T Consensus 198 tleqa~ea~~agaDiI~LDn---------~~~e~l~~av~~~~~~~~~~~leaSGGI~-~~ni~~yA~tG--vD~Is~ga 265 (284)
T PRK06096 198 TPKEAIAALRAQPDVLQLDK---------FSPQQATEIAQIAPSLAPHCTLSLAGGIN-LNTLKNYADCG--IRLFITSA 265 (284)
T ss_pred CHHHHHHHHHcCCCEEEECC---------CCHHHHHHHHHHhhccCCCeEEEEECCCC-HHHHHHHHhcC--CCEEEECc
Confidence 35788899999999887622 233444444332 467899999985 68899999988 88776665
Q ss_pred chhhccCccc
Q 021156 290 ALDIFGGNLA 299 (316)
Q Consensus 290 Al~~~~g~~~ 299 (316)
-. |..+++
T Consensus 266 l~--~a~~~D 273 (284)
T PRK06096 266 PY--YAAPAD 273 (284)
T ss_pred cc--cCCCcC
Confidence 44 554443
No 480
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=91.78 E-value=0.49 Score=44.40 Aligned_cols=46 Identities=22% Similarity=0.271 Sum_probs=38.0
Q ss_pred cHHHHHHHHHhCCCcEE--EecCCC-HHHHHHHHHcCCCEEEeCCeeec
Q 021156 121 SKAAAIEALHAYPGGLQ--VGGGIN-SDNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 121 ~~~~i~~~v~~~~~pl~--vGGGIr-~e~~~~~l~~Gad~VVigt~~~~ 166 (316)
..+.+.+..+...+|+. .=|||. .+++..+++.||+.|++||..++
T Consensus 185 ~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~k 233 (287)
T TIGR00343 185 PVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 233 (287)
T ss_pred CHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhc
Confidence 34445555556789998 999995 79999999999999999999985
No 481
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=91.70 E-value=9.7 Score=34.28 Aligned_cols=184 Identities=21% Similarity=0.176 Sum_probs=111.6
Q ss_pred cCHHHHHHHHHHcCCCcceEEEecCCc--ccHHHHHHHHHhCC-CcEEEecCCC--HHHHHHHHH-cCCCEEEeCCeeec
Q 021156 93 KSAAEFANLYKEDGLTGGHAIMLGADP--LSKAAAIEALHAYP-GGLQVGGGIN--SDNSLSYIE-EGATHVIVTSYVFN 166 (316)
Q Consensus 93 ~~p~e~a~~~~~~G~~~l~lvDLda~~--~~~~~i~~~v~~~~-~pl~vGGGIr--~e~~~~~l~-~Gad~VVigt~~~~ 166 (316)
.+|. -|+...++|++.+=+|--...+ ...+...++++.++ ++ .||==.+ .+++.++.+ .+.+.|=+-.. +
T Consensus 10 t~~e-da~~a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~~~-~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~--e 85 (208)
T COG0135 10 TRLE-DAKAAAKAGADYIGFIFVPKSPRYVSPEQAREIASAVPKVK-VVGVFVNESIEEILEIAEELGLDAVQLHGD--E 85 (208)
T ss_pred CCHH-HHHHHHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCCCC-EEEEECCCCHHHHHHHHHhcCCCEEEECCC--C
Confidence 4565 4555667787776666655443 34555666665554 22 3333334 366766665 56777766432 3
Q ss_pred CCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC----CccccC
Q 021156 167 NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD----VEGKKL 242 (316)
Q Consensus 167 ~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~----~dG~~~ 242 (316)
++++++++...++ -.|+-.+-+. .+ . + .........-++.++ .|-. .-|+.+
T Consensus 86 ----~~~~~~~l~~~~~-~~v~kai~v~--~~------------~--~--~~~~~~~~~~~d~~L-lDa~~~~~~GGtG~ 141 (208)
T COG0135 86 ----DPEYIDQLKEELG-VPVIKAISVS--EE------------G--D--LELAAREEGPVDAIL-LDAKVPGLPGGTGQ 141 (208)
T ss_pred ----CHHHHHHHHhhcC-CceEEEEEeC--Cc------------c--c--hhhhhhccCCccEEE-EcCCCCCCCCCCCc
Confidence 3999999988763 4566666654 11 0 0 111122223366655 4432 467778
Q ss_pred CCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCc-CEEEEccchhhccCcccHHHHHHHHHh
Q 021156 243 GIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGR-VDVTVGSALDIFGGNLAYKDVVAWHAQ 309 (316)
Q Consensus 243 G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~-~gVivG~Al~~~~g~~~~~~~~~~~~~ 309 (316)
.+||+++... ....|++.+||+. ++.+.++.+.+ + .++=+.|++=..-|.=+.+.+.++.++
T Consensus 142 ~fDW~~l~~~--~~~~~~~LAGGL~-p~NV~~ai~~~--~p~gvDvSSGVE~~pG~KD~~kv~~f~~~ 204 (208)
T COG0135 142 TFDWNLLPKL--RLSKPVMLAGGLN-PDNVAEAIALG--PPYGVDVSSGVESSPGIKDPAKVKAFFEA 204 (208)
T ss_pred EECHHHhccc--cccCCEEEECCCC-HHHHHHHHHhc--CCceEEeccccccCCCCCCHHHHHHHHHH
Confidence 8899998887 3466899999985 58899999888 5 888889888222233455555555544
No 482
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=91.66 E-value=4.2 Score=36.37 Aligned_cols=151 Identities=16% Similarity=0.057 Sum_probs=79.2
Q ss_pred HHHHHHHhCCCcEEEec-----CCCH-HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHH---hcCceEEEeeeee
Q 021156 124 AAIEALHAYPGGLQVGG-----GINS-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRV---VGKQRLVLDLSCR 194 (316)
Q Consensus 124 ~i~~~v~~~~~pl~vGG-----GIr~-e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~---~G~~~IvvslD~k 194 (316)
.+++.+++.+.++..+- |-.. ..++.++++|||.+.+-...- ++.++.+.+. +|+.-+++. ..-
T Consensus 40 ~~v~~l~~~~~~v~lD~K~~Dig~t~~~~~~~~~~~gad~vTvh~~~g------~~~l~~~~~~~~~~~~~v~~v~-~ls 112 (213)
T TIGR01740 40 KIIDELAKLNKLIFLDLKFADIPNTVKLQYESKIKQGADMVNVHGVAG------SESVEAAKEAASEGGRGLLAVT-ELT 112 (213)
T ss_pred HHHHHHHHcCCCEEEEEeecchHHHHHHHHHHHHhcCCCEEEEcCCCC------HHHHHHHHHHhhcCCCeEEEEE-cCC
Confidence 34455555444565665 2222 346778899999998876432 4545555543 432212222 111
Q ss_pred ecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHH--HH
Q 021156 195 KKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMA--DL 272 (316)
Q Consensus 195 ~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~e--Di 272 (316)
..+. ..|.........++++...+.|...++ + . -+.++.+++..+-.++..+||+-.. ..
T Consensus 113 -s~~~-----~~~~~~~~~~v~~~a~~~~~~g~~g~v-~---------~--~~~~~~ir~~~~~~~~vtPGI~~~g~~~~ 174 (213)
T TIGR01740 113 -SMGS-----LDYGEDTMEKVLEYAKEAKAFGLDGPV-C---------S--AEEAKEIRKFTGDFLILTPGIRLQSKGAD 174 (213)
T ss_pred -CCCh-----hhhCcCHHHHHHHHHHHhhhcCCeEEE-e---------C--HHHHHHHHHhcCCceEEeCCcCCCCCCcC
Confidence 0110 012111111344556666666665443 1 1 1233444443332579999998542 22
Q ss_pred --------HHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156 273 --------EKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV 304 (316)
Q Consensus 273 --------~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~ 304 (316)
..+.+.| ++-+++||++ |+.+ ++.+..
T Consensus 175 dq~~~~~~~~~~~~G--ad~iVvGr~I--~~~~-d~~~~~ 209 (213)
T TIGR01740 175 DQQRVVTLEDAKEAG--ADVIIVGRGI--YAAE-DPVEAA 209 (213)
T ss_pred CccccCCHHHHHHcC--CCEEEEChhh--cCCC-CHHHHH
Confidence 6677787 8889999999 7643 454443
No 483
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=91.65 E-value=1.1 Score=41.27 Aligned_cols=65 Identities=22% Similarity=0.173 Sum_probs=46.7
Q ss_pred HHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEEecCCC-------HHHHHHHHHcCCCEEEeCCeeecC
Q 021156 99 ANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGIN-------SDNSLSYIEEGATHVIVTSYVFNN 167 (316)
Q Consensus 99 a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~vGGGIr-------~e~~~~~l~~Gad~VVigt~~~~~ 167 (316)
++...+.|++.+..- .....+.+.+.++..++|+-+-|||+ .+.+..++++||+.+.+|+..++.
T Consensus 162 ~~~a~~~GADyikt~----~~~~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~ 233 (258)
T TIGR01949 162 ARLGAELGADIVKTP----YTGDIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQH 233 (258)
T ss_pred HHHHHHHCCCEEecc----CCCCHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcC
Confidence 455566788866642 12234555556566789998889998 345677779999999999998875
No 484
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=91.62 E-value=2.4 Score=38.09 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=69.1
Q ss_pred HHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh--cCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHH
Q 021156 146 NSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVV--GKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFL 223 (316)
Q Consensus 146 ~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~--G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~ 223 (316)
..+.+.++|++.|+||=.-++-++-| .-+++.... | =..+++++.- .+ +..
T Consensus 73 S~~mLkd~G~~~viiGHSERRf~Etd--i~~Kv~~a~~~g-l~~IvCi~~v---------------------~~---q~~ 125 (205)
T TIGR00419 73 SAEMLKDIGAKGTLINHSERRMKLAD--IEKKIARLKELG-LTSVVCTNNV---------------------LT---TAA 125 (205)
T ss_pred CHHHHHHcCCCEEEECcccCCCCccH--HHHHHHHHHHCC-CEEEEEEHHH---------------------HH---HHH
Confidence 37788899999999997655433333 233333322 2 2345555431 00 111
Q ss_pred HcCCCE--EEEeecCCccccCCCCHHHHHH----Hh---h-cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 224 ASYADE--FLVHGVDVEGKKLGIDDELVAL----LG---K-YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 224 ~~Ga~~--ilvtdi~~dG~~~G~d~eli~~----l~---~-~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
....+. |-|-.+..-||..-...+-.++ ++ + ..+++|+++|+|..-++...+...+ ++|+.||+|.
T Consensus 126 ~~~~~~~vIAYEPvWAIGtG~~as~~~~~~v~~~ir~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~--iDG~LvG~As 201 (205)
T TIGR00419 126 AAALEPDVVAVEPPELIGTGIPVSPAQPEVVHGSVRAVKEVNESVRVLCGAGISTGEDAELAAQLG--AEGVLLASGS 201 (205)
T ss_pred hhhhcCeEEEECCHHHhCCCCCCCHHHHHHHHHHHHhhhhhcCCceEEEeCCCCHHHHHHHhcCCC--CCEEEEeeee
Confidence 111232 2356677778776554332222 22 1 1358999999999987777776666 9999999987
No 485
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=91.58 E-value=0.55 Score=50.14 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=61.2
Q ss_pred HHHHHHHHHHcCCCcceEEEecCCc-----------ccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcC-CCEEEe
Q 021156 95 AAEFANLYKEDGLTGGHAIMLGADP-----------LSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEG-ATHVIV 160 (316)
Q Consensus 95 p~e~a~~~~~~G~~~l~lvDLda~~-----------~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~G-ad~VVi 160 (316)
-+++|+.+++.|++.++ +.++. .-.....+.++ .+++|+++-|+|+ .++++++++.| ||.|.+
T Consensus 640 ~~~~~~~l~~~g~d~i~---vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~ 716 (765)
T PRK08255 640 AVEIARAFKAAGADLID---VSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAGRADLCAL 716 (765)
T ss_pred HHHHHHHHHhcCCcEEE---eCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeE
Confidence 34788888888876544 44220 00112223344 4789999999998 59999999876 999999
Q ss_pred CCeeecCCCCCHHHHHHHHHHhcC
Q 021156 161 TSYVFNNGQMDLERLKDLVRVVGK 184 (316)
Q Consensus 161 gt~~~~~~~~~~eli~ei~~~~G~ 184 (316)
|-.++.| |+++.+..+++|.
T Consensus 717 gR~~l~d----P~~~~~~~~~~~~ 736 (765)
T PRK08255 717 ARPHLAD----PAWTLHEAAEIGY 736 (765)
T ss_pred cHHHHhC----ccHHHHHHHHcCC
Confidence 9999998 9999999888863
No 486
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=91.57 E-value=0.25 Score=47.65 Aligned_cols=71 Identities=18% Similarity=0.066 Sum_probs=53.0
Q ss_pred HHHHHHHHcCCCcceEEEecCC-c-c----c--HHHHH-HHHHhCC-CcEEEecCCCH-HHHHHHHHcCCCEEEeCCeee
Q 021156 97 EFANLYKEDGLTGGHAIMLGAD-P-L----S--KAAAI-EALHAYP-GGLQVGGGINS-DNSLSYIEEGATHVIVTSYVF 165 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvDLda~-~-~----~--~~~i~-~~v~~~~-~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~ 165 (316)
..|+...+.|++.+...=-+++ . . . ...++ +++..+. +|++..|||-+ +++..++..||+-|-+||.++
T Consensus 138 ~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl 217 (336)
T COG2070 138 REALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALALGADGVQMGTRFL 217 (336)
T ss_pred HHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhccHHHHhhhhhh
Confidence 4777788888887666666543 1 1 1 12233 3444677 89999999985 999999999999999999998
Q ss_pred cC
Q 021156 166 NN 167 (316)
Q Consensus 166 ~~ 167 (316)
-.
T Consensus 218 ~t 219 (336)
T COG2070 218 AT 219 (336)
T ss_pred cc
Confidence 65
No 487
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=91.56 E-value=3 Score=38.56 Aligned_cols=100 Identities=16% Similarity=0.116 Sum_probs=63.7
Q ss_pred HHHHHHHHHcCCCEEEeCCeeecCC-CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156 144 SDNSLSYIEEGATHVIVTSYVFNNG-QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF 222 (316)
Q Consensus 144 ~e~~~~~l~~Gad~VVigt~~~~~~-~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~ 222 (316)
.+++..+.+.||+|+=+-+.....| .-.+.+++.+.+... -.+.+.|=-| .|- .+++.. + . ....+.++.+
T Consensus 11 ~~~a~~A~~~GAdRiELc~~L~~GGlTPS~g~i~~~~~~~~-ipv~vMIRPR--~gd-F~Ys~~--E-~-~~M~~di~~~ 82 (248)
T PRK11572 11 MECALTAQQAGADRIELCAAPKEGGLTPSLGVLKSVRERVT-IPVHPIIRPR--GGD-FCYSDG--E-F-AAMLEDIATV 82 (248)
T ss_pred HHHHHHHHHcCCCEEEEccCcCCCCcCCCHHHHHHHHHhcC-CCeEEEEecC--CCC-CCCCHH--H-H-HHHHHHHHHH
Confidence 5889999999999998866655544 234788888887652 2344444332 331 222110 0 0 1244567888
Q ss_pred HHcCCCEEEEeecCCccccCCCCHHHHHHHhh
Q 021156 223 LASYADEFLVHGVDVEGKKLGIDDELVALLGK 254 (316)
Q Consensus 223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~ 254 (316)
.+.|++.|++=-.+.||+ .|.+.++++.+
T Consensus 83 ~~~GadGvV~G~L~~dg~---vD~~~~~~Li~ 111 (248)
T PRK11572 83 RELGFPGLVTGVLDVDGH---VDMPRMRKIMA 111 (248)
T ss_pred HHcCCCEEEEeeECCCCC---cCHHHHHHHHH
Confidence 999999998877777765 56666666544
No 488
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=91.52 E-value=0.3 Score=47.95 Aligned_cols=70 Identities=20% Similarity=0.062 Sum_probs=48.0
Q ss_pred HHHHHHHHcCCCcceEEEecCCc-----ccHHHHHHHHHhC--CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeec
Q 021156 97 EFANLYKEDGLTGGHAIMLGADP-----LSKAAAIEALHAY--PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvDLda~~-----~~~~~i~~~v~~~--~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~ 166 (316)
+-|+...+.|++.+.+-.-.+.. .....+.++.+.+ .+||++.||||. .|+-+++..||+.|.+|+.++.
T Consensus 257 ~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~ 334 (381)
T PRK11197 257 EDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLLGRAFVY 334 (381)
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHH
Confidence 36677778888865543322211 1122233333333 589999999995 9999999999999999998765
No 489
>PRK06256 biotin synthase; Validated
Probab=91.52 E-value=13 Score=35.39 Aligned_cols=183 Identities=16% Similarity=0.105 Sum_probs=97.7
Q ss_pred HHHHHHHHHHcCCCcceEEEecCCccc--HHHH---HHHHH-hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecC
Q 021156 95 AAEFANLYKEDGLTGGHAIMLGADPLS--KAAA---IEALH-AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNN 167 (316)
Q Consensus 95 p~e~a~~~~~~G~~~l~lvDLda~~~~--~~~i---~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~ 167 (316)
.++.++.+.+.|+.+++++.-...... .+.+ ++.++ ..++.+.+-.|.- .+.++.+.++|++.+.+|-.. .+
T Consensus 96 I~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~l~~e~l~~LkeaG~~~v~~~lEt-s~ 174 (336)
T PRK06256 96 LIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGLLTEEQAERLKEAGVDRYNHNLET-SR 174 (336)
T ss_pred HHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCcCCHHHHHHHHHhCCCEEecCCcc-CH
Confidence 344555555678777666642221111 1233 33333 2456677777876 478999999999999887554 21
Q ss_pred -------CCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC-Ccc
Q 021156 168 -------GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD-VEG 239 (316)
Q Consensus 168 -------~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~-~dG 239 (316)
+.-+.+...+..+......+-++.. .+.-.+. +.-+..+.+..+.+.+++.+-++... ..|
T Consensus 175 ~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~--------~I~GlgE---t~ed~~~~~~~l~~l~~~~v~i~~l~P~pG 243 (336)
T PRK06256 175 SYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSG--------GIIGMGE---SLEDRVEHAFFLKELDADSIPINFLNPIPG 243 (336)
T ss_pred HHHhhcCCCCCHHHHHHHHHHHHHcCCeeccC--------eEEeCCC---CHHHHHHHHHHHHhCCCCEEeecccccCCC
Confidence 0011221212222211111211111 2221222 22356778888888999987655432 245
Q ss_pred cc----CCC-CHHHHHHHh--h--cCCCcEEEEeCC-CCHHHHHHHHHhCCCcCEEEEccch
Q 021156 240 KK----LGI-DDELVALLG--K--YSPIPVTYAGGV-TTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 240 ~~----~G~-d~eli~~l~--~--~~~iPVIasGGI-~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
|- ..+ +.+.++.++ + ..+..+.++||= ....|...+.-.| +.++|+|--|
T Consensus 244 T~l~~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~~~~~~~g--~~~~~~g~~l 303 (336)
T PRK06256 244 TPLENHPELTPLECLKTIAIFRLINPDKEIRIAGGREVNLRSLQPLGLGG--ANSVIVGNYL 303 (336)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCeeEecCchhhhchhhHHHHhcc--CceeeECCcc
Confidence 42 122 445554443 2 245778788885 4556664444345 9999999877
No 490
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=91.52 E-value=2.7 Score=35.13 Aligned_cols=88 Identities=14% Similarity=-0.039 Sum_probs=56.8
Q ss_pred cCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhc-C-CCcEEEEeCCC-----CHHHHHHHHHhCCCcCEE
Q 021156 213 VYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKY-S-PIPVTYAGGVT-----TMADLEKIKVAGIGRVDV 285 (316)
Q Consensus 213 ~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~-~-~iPVIasGGI~-----s~eDi~~l~~~G~g~~gV 285 (316)
..+.+++..+.+..++.+.+..... +....=.++++.+++. . +++|+++|.+. ..++..++.++| ++
T Consensus 41 vp~e~i~~~a~~~~~d~V~lS~~~~--~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G--~~-- 114 (137)
T PRK02261 41 TSQEEFIDAAIETDADAILVSSLYG--HGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMG--FD-- 114 (137)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCccc--cCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcC--CC--
Confidence 3577888889999999776544322 1111113456666554 3 67888888774 245667888888 53
Q ss_pred EEccchhhccCcccHHHHHHHHHhhcc
Q 021156 286 TVGSALDIFGGNLAYKDVVAWHAQQEA 312 (316)
Q Consensus 286 ivG~Al~~~~g~~~~~~~~~~~~~~~~ 312 (316)
+. |...-+++++++|++++.+
T Consensus 115 ----~v--f~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 115 ----RV--FPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred ----EE--ECcCCCHHHHHHHHHHHhc
Confidence 34 6656688999999887643
No 491
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=91.51 E-value=12 Score=34.93 Aligned_cols=193 Identities=13% Similarity=0.056 Sum_probs=116.4
Q ss_pred cCCccCHHHHHHHHHHcCCCcceEEEec-CC---------cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCE
Q 021156 89 FESDKSAAEFANLYKEDGLTGGHAIMLG-AD---------PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATH 157 (316)
Q Consensus 89 ~~~~~~p~e~a~~~~~~G~~~l~lvDLd-a~---------~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~ 157 (316)
.++.....++|+.+.+.|+..+..-..+ .+ ......+.+.+++.++|+.. =+- .++++.+.+. ++.
T Consensus 37 ie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~t--e~~d~~~~~~l~~~-vd~ 113 (266)
T PRK13398 37 VESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVT--EVMDTRDVEEVADY-ADM 113 (266)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEE--eeCChhhHHHHHHh-CCE
Confidence 3333456689999999887643333222 11 11233455555667777665 343 4677877777 999
Q ss_pred EEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCC
Q 021156 158 VIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDV 237 (316)
Q Consensus 158 VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~ 237 (316)
.-||+...+| .++++++. ..| .- +=++ +|. . .+--+....++.+...|-..+++..+
T Consensus 114 ~kIga~~~~n----~~LL~~~a-~~g-kP----V~lk--~G~-----~----~s~~e~~~A~e~i~~~Gn~~i~L~~r-- 170 (266)
T PRK13398 114 LQIGSRNMQN----FELLKEVG-KTK-KP----ILLK--RGM-----S----ATLEEWLYAAEYIMSEGNENVVLCER-- 170 (266)
T ss_pred EEECcccccC----HHHHHHHh-cCC-Cc----EEEe--CCC-----C----CCHHHHHHHHHHHHhcCCCeEEEEEC--
Confidence 9999999997 88998885 343 12 2222 231 0 01112444566677788877655333
Q ss_pred cc-ccCCC-----CHHHHHHHhhcCCCcEEE-EeCCCC-----HHHHHHHHHhCCCcCEEEEcc------chhhccCccc
Q 021156 238 EG-KKLGI-----DDELVALLGKYSPIPVTY-AGGVTT-----MADLEKIKVAGIGRVDVTVGS------ALDIFGGNLA 299 (316)
Q Consensus 238 dG-~~~G~-----d~eli~~l~~~~~iPVIa-sGGI~s-----~eDi~~l~~~G~g~~gVivG~------Al~~~~g~~~ 299 (316)
-+ +..++ |+..+..+++..+.||++ +..... .........+| ++|+||-+ |+--+...++
T Consensus 171 G~~t~~~Y~~~~vdl~~i~~lk~~~~~pV~~D~sHs~G~~~~v~~~~~aAva~G--a~Gl~iE~H~~pd~a~~D~~~sl~ 248 (266)
T PRK13398 171 GIRTFETYTRNTLDLAAVAVIKELSHLPIIVDPSHATGRRELVIPMAKAAIAAG--ADGLMIEVHPEPEKALSDARQTLN 248 (266)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCEEEeCCCcccchhhHHHHHHHHHHcC--CCEEEEeccCCccccCCchhhcCC
Confidence 11 12222 667788888777899999 565555 55566666667 89999875 3311223467
Q ss_pred HHHHHHHHHh
Q 021156 300 YKDVVAWHAQ 309 (316)
Q Consensus 300 ~~~~~~~~~~ 309 (316)
++++.+++++
T Consensus 249 p~~l~~l~~~ 258 (266)
T PRK13398 249 FEEMKELVDE 258 (266)
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 492
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.48 E-value=1.2 Score=41.97 Aligned_cols=65 Identities=15% Similarity=0.136 Sum_probs=47.9
Q ss_pred HHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHh--CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156 97 EFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA--YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~ 166 (316)
+.++...++|++ ++-||.- +.+.+.+++.. -...+.+-|||+.+.+..|...|+|.+++|+..+.
T Consensus 204 ee~~ea~~~gaD---iImLDn~--s~e~l~~av~~~~~~~~leaSGgI~~~ni~~yA~tGVD~Is~galths 270 (281)
T PRK06543 204 DQIEPVLAAGVD---TIMLDNF--SLDDLREGVELVDGRAIVEASGNVNLNTVGAIASTGVDVISVGALTHS 270 (281)
T ss_pred HHHHHHHhcCCC---EEEECCC--CHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHhcCCCEEEeCccccC
Confidence 345555567765 7777742 34455555542 23579999999999999999999999999997765
No 493
>PLN02429 triosephosphate isomerase
Probab=91.37 E-value=2.4 Score=40.58 Aligned_cols=147 Identities=15% Similarity=0.052 Sum_probs=79.0
Q ss_pred HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHh--cCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156 146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVV--GKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD 221 (316)
Q Consensus 146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~--G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~ 221 (316)
.++.+.+.|++.|+||=.-++. ++.|...-+++.... | =..+++++-... -+-.| . +..-+.+.++.
T Consensus 139 Sa~mLkd~Gv~~ViiGHSERR~~f~Etd~~V~~Kv~~al~~G-L~pIvCIGE~l~-----ere~g-~--t~~vi~~Ql~~ 209 (315)
T PLN02429 139 SVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEG-LGVIACIGEKLE-----EREAG-K--TFDVCFAQLKA 209 (315)
T ss_pred CHHHHHHcCCCEEEeCccccCCCCCcCHHHHHHHHHHHHHCc-CEEEEEcCCCHH-----HHhCC-C--HHHHHHHHHHH
Confidence 3788889999999999765543 333333333333322 2 245666653100 00000 0 00001111222
Q ss_pred HHHcCC---CEE--EEeecCCccccCCCCHHHHHH----Hh----h------cCCCcEEEEeCCCCHHHHHHHHHhCCCc
Q 021156 222 FLASYA---DEF--LVHGVDVEGKKLGIDDELVAL----LG----K------YSPIPVTYAGGVTTMADLEKIKVAGIGR 282 (316)
Q Consensus 222 ~~~~Ga---~~i--lvtdi~~dG~~~G~d~eli~~----l~----~------~~~iPVIasGGI~s~eDi~~l~~~G~g~ 282 (316)
..+ ++ +.+ -|-.+..-|+..-...+-+++ ++ + ..+++|+++|+|..-++...+...+ +
T Consensus 210 ~l~-~v~~~~~ivIAYEPvWAIGTGk~as~e~~~~v~~~IR~~l~~~~~~~va~~irILYGGSV~~~N~~el~~~~d--i 286 (315)
T PLN02429 210 FAD-AVPSWDNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEED--I 286 (315)
T ss_pred HHc-cCCcccceEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhccCceEEEcCccCHHHHHHHhcCCC--C
Confidence 221 12 222 256777778876654443332 22 1 1258999999999877766666655 9
Q ss_pred CEEEEccchhhccCcccHHHHHHHH
Q 021156 283 VDVTVGSALDIFGGNLAYKDVVAWH 307 (316)
Q Consensus 283 ~gVivG~Al~~~~g~~~~~~~~~~~ 307 (316)
||+.||+|. ++ .=.|.++.+..
T Consensus 287 DG~LVGgAS--L~-~~~F~~Ii~~~ 308 (315)
T PLN02429 287 DGFLVGGAS--LK-GPEFATIVNSV 308 (315)
T ss_pred CEEEeecce--ec-HHHHHHHHHHH
Confidence 999999999 73 23455555543
No 494
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=91.29 E-value=4.4 Score=39.42 Aligned_cols=150 Identities=11% Similarity=0.083 Sum_probs=88.5
Q ss_pred CCcEEEecCCCH--HHHHHHHHcC-----------CCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCe
Q 021156 133 PGGLQVGGGINS--DNSLSYIEEG-----------ATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGK 199 (316)
Q Consensus 133 ~~pl~vGGGIr~--e~~~~~l~~G-----------ad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~ 199 (316)
++-+-.+=|-.. +.+++++++| ++.|.++...+.- +-|.+..+++++... ..-+++-.-. |
T Consensus 101 PValHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~lpf-eENI~~TrevVe~Ah--~~GvsVEaEL--G- 174 (357)
T TIGR01520 101 PVVLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSEEPI-EENIEICVKYLKRMA--KIKMWLEIEI--G- 174 (357)
T ss_pred CEEEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCCCCCH-HHHHHHHHHHHHHHH--HcCCEEEEEe--c-
Confidence 334455666654 5588888886 8889886554421 003566666665431 1123443311 1
Q ss_pred eEEE-eCCc---ce----ecccCHHHHHHHHHHc----CCCEEEEeecCCccccC-C---CCHHHHHHH----hhcCCCc
Q 021156 200 YAIV-TDRW---QK----FSDVYLDERVLDFLAS----YADEFLVHGVDVEGKKL-G---IDDELVALL----GKYSPIP 259 (316)
Q Consensus 200 ~~v~-~~gw---~~----~~~~~~~e~a~~~~~~----Ga~~ilvtdi~~dG~~~-G---~d~eli~~l----~~~~~iP 259 (316)
.|. ..+. .. ..--++.+..+...+. |++.+-+--=+.-|.+. + .|+++++++ .+.+++|
T Consensus 175 -~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~~~~~~~~vP 253 (357)
T TIGR01520 175 -ITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQEYVSEKLGLP 253 (357)
T ss_pred -ccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccCHHHHHHHHHHHHHhcCCC
Confidence 110 0111 00 0012455544545544 77876433324456662 3 499999999 4566788
Q ss_pred ------EEEEeCCCCH-HHHHHHHHhCCCcCEEEEccch
Q 021156 260 ------VTYAGGVTTM-ADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 260 ------VIasGGI~s~-eDi~~l~~~G~g~~gVivG~Al 291 (316)
+..-||=+.. ++++++.+.| +..|=+++-+
T Consensus 254 ~~~~~pLVLHGgSGi~~e~i~kai~~G--I~KINi~Tdl 290 (357)
T TIGR01520 254 AAKPLFFVFHGGSGSTKQEIKEALSYG--VVKMNIDTDT 290 (357)
T ss_pred cCCCCcEEEeCCCCCCHHHHHHHHHCC--CeEEEeCcHH
Confidence 8888887766 8899999998 9999999877
No 495
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=91.29 E-value=8.6 Score=38.53 Aligned_cols=154 Identities=13% Similarity=0.121 Sum_probs=88.9
Q ss_pred HHHHHHHHHHcCCCcceEEEecCCcc-cHHHHHHHHHhCCCcEEEecC-CCH-HHHHHHHH--cCCCEEEeCCeeecCCC
Q 021156 95 AAEFANLYKEDGLTGGHAIMLGADPL-SKAAAIEALHAYPGGLQVGGG-INS-DNSLSYIE--EGATHVIVTSYVFNNGQ 169 (316)
Q Consensus 95 p~e~a~~~~~~G~~~l~lvDLda~~~-~~~~i~~~v~~~~~pl~vGGG-Ir~-e~~~~~l~--~Gad~VVigt~~~~~~~ 169 (316)
...+|..+.+.| ..+.+++.|.-.+ ....+.......++|+..... -.. +-+..+++ ...|.|+|+|+-+..
T Consensus 112 aakLA~~L~~~g-~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~~~DvVIIDTAGr~~-- 188 (437)
T PRK00771 112 AAKLARYFKKKG-LKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFKKADVIIVDTAGRHA-- 188 (437)
T ss_pred HHHHHHHHHHcC-CeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhhcCCEEEEECCCccc--
Confidence 556888787776 4678888875322 122233344557788765432 232 32444333 246999999995432
Q ss_pred CCHHHHHHHHH---HhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH-cCCCEEEEeecCCccccCCCC
Q 021156 170 MDLERLKDLVR---VVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA-SYADEFLVHGVDVEGKKLGID 245 (316)
Q Consensus 170 ~~~eli~ei~~---~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~-~Ga~~ilvtdi~~dG~~~G~d 245 (316)
.+.++++|+.. ...++.+++.+|.. .| .+..+.++.+.+ .++..+++|-.|.+... |.=
T Consensus 189 ~d~~lm~El~~l~~~~~pdevlLVvda~--~g--------------q~av~~a~~F~~~l~i~gvIlTKlD~~a~~-G~~ 251 (437)
T PRK00771 189 LEEDLIEEMKEIKEAVKPDEVLLVIDAT--IG--------------QQAKNQAKAFHEAVGIGGIIITKLDGTAKG-GGA 251 (437)
T ss_pred chHHHHHHHHHHHHHhcccceeEEEecc--cc--------------HHHHHHHHHHHhcCCCCEEEEecccCCCcc-cHH
Confidence 12556555543 34456677777763 11 245567777664 67889999988765332 221
Q ss_pred HHHHHHHhhcCCCcEEEEeCCCCHHHH
Q 021156 246 DELVALLGKYSPIPVTYAGGVTTMADL 272 (316)
Q Consensus 246 ~eli~~l~~~~~iPVIasGGI~s~eDi 272 (316)
-.+...+++||.+-|-=..++|+
T Consensus 252 ----ls~~~~~~~Pi~fig~Ge~v~Dl 274 (437)
T PRK00771 252 ----LSAVAETGAPIKFIGTGEKIDDL 274 (437)
T ss_pred ----HHHHHHHCcCEEEEecCCCcccC
Confidence 23344567888776653333444
No 496
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=91.27 E-value=0.48 Score=41.20 Aligned_cols=65 Identities=28% Similarity=0.281 Sum_probs=45.1
Q ss_pred HHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH---h--CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156 97 EFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH---A--YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~---~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~ 166 (316)
+.++...++|++ ++-||.- +.+.+.++++ . ..+.+.+.|||+.+.+.+|.+.|+|.+.+|+..+.
T Consensus 91 ee~~ea~~~g~d---~I~lD~~--~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~gvD~isvg~~~~~ 160 (169)
T PF01729_consen 91 EEAEEALEAGAD---IIMLDNM--SPEDLKEAVEELRELNPRVKIEASGGITLENIAEYAKTGVDVISVGSLTHS 160 (169)
T ss_dssp HHHHHHHHTT-S---EEEEES---CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHTT-SEEEECHHHHS
T ss_pred HHHHHHHHhCCC---EEEecCc--CHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhcCCCEEEcChhhcC
Confidence 345555566644 6777753 2344444443 2 35889999999999999999999999999987654
No 497
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=91.27 E-value=1.8 Score=36.00 Aligned_cols=83 Identities=19% Similarity=0.207 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhc-C-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156 214 YLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKY-S-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291 (316)
Q Consensus 214 ~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~-~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al 291 (316)
++.++++.+.+.+++.+.+...+ ++....-.++++.+++. . ++++++ ||.-..+|..++.++| +++++
T Consensus 41 s~e~~v~aa~e~~adii~iSsl~--~~~~~~~~~~~~~L~~~g~~~i~viv-GG~~~~~~~~~l~~~G--vd~~~----- 110 (132)
T TIGR00640 41 TPEEIARQAVEADVHVVGVSSLA--GGHLTLVPALRKELDKLGRPDILVVV-GGVIPPQDFDELKEMG--VAEIF----- 110 (132)
T ss_pred CHHHHHHHHHHcCCCEEEEcCch--hhhHHHHHHHHHHHHhcCCCCCEEEE-eCCCChHhHHHHHHCC--CCEEE-----
Confidence 57889999999999988765544 33322334566667653 3 455555 5555678899999998 75543
Q ss_pred hhccCcccHHHHHHHHHh
Q 021156 292 DIFGGNLAYKDVVAWHAQ 309 (316)
Q Consensus 292 ~~~~g~~~~~~~~~~~~~ 309 (316)
+.|. ++.++++++.+
T Consensus 111 --~~gt-~~~~i~~~l~~ 125 (132)
T TIGR00640 111 --GPGT-PIPESAIFLLK 125 (132)
T ss_pred --CCCC-CHHHHHHHHHH
Confidence 2333 56666665554
No 498
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=91.25 E-value=0.56 Score=45.82 Aligned_cols=70 Identities=20% Similarity=0.186 Sum_probs=47.7
Q ss_pred HHHHHHHHcCCCcceEEEecCCc-----ccHHHHHHHHHhC--CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeec
Q 021156 97 EFANLYKEDGLTGGHAIMLGADP-----LSKAAAIEALHAY--PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFN 166 (316)
Q Consensus 97 e~a~~~~~~G~~~l~lvDLda~~-----~~~~~i~~~v~~~--~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~ 166 (316)
+-|+...+.|++.+.+-.-.+.. .....+.++.+.+ .+||++.||||. .|+-+.+..||+.|-+|..++.
T Consensus 236 ~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~ 313 (367)
T PLN02493 236 EDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF 313 (367)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 46677778888865333322221 1122233333433 489999999995 9999999999999999987763
No 499
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=91.09 E-value=1.1 Score=42.24 Aligned_cols=66 Identities=20% Similarity=0.157 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHh-----CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeee
Q 021156 95 AAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA-----YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVF 165 (316)
Q Consensus 95 p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~-----~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~ 165 (316)
.++.|+...++|++ ++-||.- ..+.+.++++. -.+.+.+-|||+.+.+..|...|+|.+++|+..+
T Consensus 198 tleqa~ea~~agaD---iI~LDn~--~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~gal~~ 268 (284)
T PRK06096 198 TPKEAIAALRAQPD---VLQLDKF--SPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADCGIRLFITSAPYY 268 (284)
T ss_pred CHHHHHHHHHcCCC---EEEECCC--CHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhcCCCEEEECcccc
Confidence 44577777788876 5566632 33444444432 3578999999999999999999999999998743
No 500
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=91.07 E-value=1.4 Score=44.13 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=38.3
Q ss_pred CCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCC-CHHHHHHHHHH
Q 021156 133 PGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQM-DLERLKDLVRV 181 (316)
Q Consensus 133 ~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~-~~eli~ei~~~ 181 (316)
++||...|||- .+++..+|..||+.|.+||.++-..|. ..+..++....
T Consensus 224 ~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~flat~Esgas~~~K~~L~~ 274 (444)
T TIGR02814 224 PIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQCTVEAGTSDNVKKLLAK 274 (444)
T ss_pred CceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHHhCccccCCHHHHHHHHh
Confidence 68999999997 599999999999999999998865321 23455565543
Done!