RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 021156
(316 letters)
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino]
imidazole-4-carboxamide...; TIM alpha/beta barrel; HET:
CIT; 1.30A {Saccharomyces cerevisiae}
Length = 260
Score = 267 bits (684), Expect = 1e-89
Identities = 114/263 (43%), Positives = 161/263 (61%), Gaps = 12/263 (4%)
Query: 55 RFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIM 114
+F CID+H G+VKQIVG TL K+D K TNF S ++ +A LYK+ + G H I
Sbjct: 2 KFIGCIDLHNGEVKQIVGGTLTSKKEDVPK--TNFVSQHPSSYYAKLYKDRDVQGCHVIK 59
Query: 115 LGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVF-NNGQMDLE 173
L P + AA EAL P LQVGGGIN N L ++ + A+ VIVTS++F G L+
Sbjct: 60 L--GPNNDDAAREALQESPQFLQVGGGINDTNCLEWL-KWASKVIVTSWLFTKEGHFQLK 116
Query: 174 RLKDLVRVVGKQRLVLDLSCRK-KDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLV 232
RL+ L + GK R+V+DLSCRK +DG++ + ++WQ +D+ L+ L Y +EFL+
Sbjct: 117 RLERLTELCGKDRIVVDLSCRKTQDGRWIVAMNKWQTLTDLELNADTFRELRKYTNEFLI 176
Query: 233 HGVDVEGKKLGIDDELVALLG----KYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVG 288
H DVEG GID+ LV+ L Y + + YAGG ++ DL+ + G+VD+T G
Sbjct: 177 HAADVEGLCGGIDELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFG 236
Query: 289 SALDIFGGNLA-YKDVVAWHAQQ 310
S+LDIFGGNL ++D W+ +Q
Sbjct: 237 SSLDIFGGNLVKFEDCCRWNEKQ 259
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol-
4-carboxamid ribonucleotid...; isomerase, histidine
biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1
PDB: 2cff_A 2w79_A
Length = 241
Score = 69.9 bits (172), Expect = 3e-14
Identities = 31/176 (17%), Positives = 61/176 (34%), Gaps = 19/176 (10%)
Query: 123 AAAIEALHAYPGGLQVGGGINSDNSL-SYIEEGATHVIVTSYVFNNGQMDLERLKDLVRV 181
+E L + +Q+GGGI S + + G IV+S V + ++
Sbjct: 63 LPVLEKLSEFAEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLED--------PSFLKS 114
Query: 182 VGK--QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEG 239
+ + V L R G+ + W ++ + +E + ++ +G
Sbjct: 115 LREIDVEPVFSLDTR--GGR--VAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDG 170
Query: 240 KKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVD----VTVGSAL 291
D L + + + V AGG+++ L+ + V VG A
Sbjct: 171 TLQEHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAF 226
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis,
TIM-barrel, His biosynthesis, tryptophan biosynthesis;
HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A
2y85_A*
Length = 244
Score = 69.5 bits (171), Expect = 4e-14
Identities = 42/201 (20%), Positives = 81/201 (40%), Gaps = 11/201 (5%)
Query: 96 AEFANLYKEDGLTGGHAIML-GA-DPLSKAAAIEA-LHAYPGGLQVGGGINSDNSL-SYI 151
+ A ++ DG H + L A S + + +++ GGI D SL + +
Sbjct: 34 VDAALGWQRDGAEWIHLVDLDAAFGRGSNHELLAEVVGKLDVQVELSGGIRDDESLAAAL 93
Query: 152 EEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFS 211
G V V + N + ++ G ++ + L + DG++ + W+
Sbjct: 94 ATGCARVNVGTAALEN----PQWCARVIGEHGD-QVAVGLDVQIIDGEHRLRGRGWET-D 147
Query: 212 DVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMAD 271
L + + + F+V + +G G + +L+A + + PV +GGV+++ D
Sbjct: 148 GGDLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDD 207
Query: 272 LEKIKVAGIGRVD-VTVGSAL 291
L I V+ VG AL
Sbjct: 208 LRAIATLTHRGVEGAIVGKAL 228
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan
biosynthesis; 1.8A {Streptomyces coelicolor} SCOP:
c.1.2.1 PDB: 2vep_A 2x30_A
Length = 244
Score = 66.4 bits (163), Expect = 6e-13
Identities = 31/157 (19%), Positives = 62/157 (39%), Gaps = 12/157 (7%)
Query: 137 QVGGGINSDNSLS-YIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRK 195
++ GGI D++L+ + G T V + + E + ++ G ++ + L R
Sbjct: 79 ELSGGIRDDDTLAAALATGCTRVNLGTAALET----PEWVAKVIAEHGD-KIAVGLDVR- 132
Query: 196 KDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKY 255
+ W + + + ++V + +G G + EL+ +
Sbjct: 133 -GTT--LRGRGWTRDGGDLYET-LDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCAA 188
Query: 256 SPIPVTYAGGVTTMADLEKIKVAGIGRVD-VTVGSAL 291
+ PV +GGV+++ DL I V+ VG AL
Sbjct: 189 TDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKAL 225
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 4e-05
Identities = 56/362 (15%), Positives = 111/362 (30%), Gaps = 125/362 (34%)
Query: 15 SLQPTSVSDLFWLHKNNNSSFYAPSSSLSRPSRLSVRCAVRFRPCIDIHKGKVKQIVGST 74
S +P ++S H + P++S S+L ++
Sbjct: 5 STRPLTLS-----HGSLEHVLLVPTASFFIASQL-------------------QEQFNKI 40
Query: 75 LQDSKDDGTKLVTNFESD---KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA 131
L + + F +D + AE + L G+ + +P + L+
Sbjct: 41 LPEPTE-------GFAADDEPTTPAELVGKF----L--GY-VSSLVEPSKVGQFDQVLNL 86
Query: 132 YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDL 191
+ + Y+E H + + N L + K+L++ R++
Sbjct: 87 ---------CLTEFEN-CYLEGNDIHALAAKLLQENDT-TLVKTKELIKNYITARIMAKR 135
Query: 192 SCRK----------KDGK---YAIVTDRWQKF-----SDVYLDE----------RVLDFL 223
K +G AI F +D Y +E V D +
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAI-------FGGQGNTDDYFEELRDLYQTYHVLVGDLI 188
Query: 224 ASYADEF--LVHGVDVEGKKL---GIDDELVALLGKYSP---------IPVTYAG-GVTT 268
A+ L+ ++ +K+ G++ ++ L S IP++ GV
Sbjct: 189 KFSAETLSELIRTT-LDAEKVFTQGLN--ILEWLENPSNTPDKDYLLSIPISCPLIGVIQ 245
Query: 269 MADLEKI-KVAGIGRVDVTVGSALDIFGGNLAY-KDVVA---------W----HAQQEAL 313
+A K+ G T G G + + +V W + ++A+
Sbjct: 246 LAHYVVTAKLLG-----FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300
Query: 314 TV 315
TV
Sbjct: 301 TV 302
Score = 34.6 bits (79), Expect = 0.040
Identities = 35/213 (16%), Positives = 65/213 (30%), Gaps = 84/213 (39%)
Query: 5 QGLISPARTRSLQP----TSVSDLF-----WLHKNNNSSF-------Y----APSSSLSR 44
+GL+S T+ QP + F +++F Y + + +S
Sbjct: 1723 KGLLS--ATQFTQPALTLMEKA-AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSI 1779
Query: 45 PSRLSVRCAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKE 104
S + V V +R G T+Q A
Sbjct: 1780 ESLVEV---VFYR--------------GMTMQV-----------------AVP------R 1799
Query: 105 DGLTGGHAIMLGADPLSKAAAI--EALHAYPGGLQVGGG-----INSDNSLSYIEEGATH 157
D L + M+ +P AA+ EAL + G +N N E
Sbjct: 1800 DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN-YNV-----ENQQ- 1852
Query: 158 VIVTSYVFNNGQM-DLERLKDLVRVVGKQRLVL 189
V + G + L+ + +++ + Q++ +
Sbjct: 1853 -YVAA-----GDLRALDTVTNVLNFIKLQKIDI 1879
Score = 34.3 bits (78), Expect = 0.056
Identities = 31/194 (15%), Positives = 58/194 (29%), Gaps = 65/194 (33%)
Query: 112 AIMLGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTS---Y---VF 165
A+ L + KAA E L + G I +D + A H S Y
Sbjct: 1735 ALTL----MEKAA-FEDLKSK-------GLIPADATF------AGH----SLGEYAALAS 1772
Query: 166 NNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGK--YAIVTDRWQKFSDVYLDERVLDFL 223
M +E L ++V G + R + G+ Y ++ + + + E + +
Sbjct: 1773 LADVMSIESLVEVVFYRGM--TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV 1830
Query: 224 ASYADEFLVHGVDVE--------------GKKLGIDDELVALLG-------KYSPIPVTY 262
G VE G + D + +L + +
Sbjct: 1831 ERVGKR---TGWLVEIVNYNVENQQYVAAGDLRAL-DTVTNVLNFIKLQKIDIIELQKSL 1886
Query: 263 AGGVTTMADLEKIK 276
+ LE+++
Sbjct: 1887 S--------LEEVE 1892
Score = 31.2 bits (70), Expect = 0.49
Identities = 38/230 (16%), Positives = 65/230 (28%), Gaps = 67/230 (29%)
Query: 1 MASVQGLISP------ARTRSLQPT----SVSDLFWLHKNNNSSFY--APSSSLSRPSRL 48
M S+ L +T S P +S L N + P SL L
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS-LV----NGAKNLVVSGPPQSLYG-LNL 391
Query: 49 SVRCAVRFRPCIDIHKGKVKQ--IVGST-------------LQDSKDDGTKLVTNFESDK 93
++R + +D + + + S L + D K +
Sbjct: 392 TLR-KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 94 SAAEFA----------NLYKEDG-LTGGHAIMLGADPL--SKAAAIEALHAY---PGGLQ 137
+A + +L G ++ + P+ +A H PGG
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGAS 510
Query: 138 VGGGINSDNSLSYIEEGA-THVIVTSYVFNNGQMDLERLKDLVRVVG-KQ 185
G + N ++G VIV + + D + G KQ
Sbjct: 511 GLGVLTHRN-----KDGTGVRVIVAGTL--DINPDDD--------YGFKQ 545
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 0.001
Identities = 49/291 (16%), Positives = 77/291 (26%), Gaps = 106/291 (36%)
Query: 8 ISPARTRSLQPTSVSDL-----FWLHKNNNSSFYAPSSSLS--RPS---RLSVRCAVRFR 57
+P R S+ S+ D W H N + SSL+ P+ ++ R +V F
Sbjct: 325 TNP-RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FP 382
Query: 58 PCIDIHKGKVKQIVGSTL-QDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLG 116
P + I+ S + D +V N S E ++ +I L
Sbjct: 383 P--SA---HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE---KQPKESTISIPSIYL- 433
Query: 117 ADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLK 176
+ K ALH IV Y D +
Sbjct: 434 -ELKVKLENEYALHR--------------------------SIVDHYNIPKT-FDSD--- 462
Query: 177 DLVRVVGKQRLVLDLSCRKKDG----------KYAIVTDRWQKFSDVYLDERVLDFLASY 226
DL D K +R F V+LD FL
Sbjct: 463 -------------DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD---FRFL--- 503
Query: 227 ADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVT-TMADLEKIK 276
+K+ ++ +G + T+ L+ K
Sbjct: 504 ------------EQKI-----------RHDSTAWNASGSILNTLQQLKFYK 531
Score = 37.5 bits (86), Expect = 0.006
Identities = 60/384 (15%), Positives = 112/384 (29%), Gaps = 114/384 (29%)
Query: 11 ARTRSLQPTSVSDLFWLHKNNNSSFYAPSSSLSRPSRL--------SVRCAVRFRPCIDI 62
+ +Q +FWL+ N +S P + L +L + R + I
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNS---PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 63 H--KGKVKQIVGST-----------LQDSK-----DDGTK-LVTNFESDKSAAEFANLYK 103
H + ++++++ S +Q++K + K L+T K +F +
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT--RFKQVTDFLSAAT 285
Query: 104 ---------EDGLTGGHAIMLGADPLSKAAAI-------EALHAYP------GGLQVGGG 141
LT L L K E L P G
Sbjct: 286 TTHISLDHHSMTLTPDEVKSL----LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 142 INSDNSLSYIEEGATHVIVTSY----------------VFNNG----QMDLERL-KDLVR 180
DN + T +I +S VF + L + D+++
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 181 VVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVE-- 238
+V++ + + ++ K S + + L+ +E+ +H V+
Sbjct: 402 SD--VMVVVNKLHKYS------LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 239 --GKKLGIDDELVALLGKYSPIPVTYAG---GVTTMAD--------------LE-KIKVA 278
K DD + L +Y ++ G + LE KI+
Sbjct: 454 NIPKTFDSDDLIPPYLDQYF---YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 279 GIGRVDVTVGSALDIFGGNLAYKD 302
GS L+ YK
Sbjct: 511 STAW--NASGSILNTLQQLKFYKP 532
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.027
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 6/28 (21%)
Query: 29 KNNNSSF--YAPSSSLSRPSRLSVRCAV 54
K +S YA S+ P+ L+++ +
Sbjct: 23 KKLQASLKLYADDSA---PA-LAIKATM 46
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF,
half barrel, de novo protein; 3.10A {Thermotoga
maritima} PDB: 2lle_A
Length = 237
Score = 34.0 bits (79), Expect = 0.040
Identities = 29/138 (21%), Positives = 61/138 (44%), Gaps = 7/138 (5%)
Query: 136 LQVGGGINSD-NSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCR 194
+ G + I+ GA IV + N + + + + G Q +V+ + +
Sbjct: 58 VCSAMGQQAMVIEA--IKAGAKDFIVNTAAVENPSL----ITQIAQTFGSQAVVVAIDAK 111
Query: 195 KKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGK 254
+ DG++ + T +K + + L + V++ A E L+ +D +G K G D E++ +
Sbjct: 112 RVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRP 171
Query: 255 YSPIPVTYAGGVTTMADL 272
+ +P+ +GG M
Sbjct: 172 LTTLPIIASGGAGKMEHF 189
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase;
1.64A {Vibrionales bacterium swat-3}
Length = 232
Score = 32.9 bits (75), Expect = 0.096
Identities = 10/72 (13%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 114 MLGADPLSKAAAIEALHAYPGGLQVG--GGINSDNSLSYIEEGATHVIVTSYVFNNGQM- 170
A+ + +++L G +++ GGI N +Y+ +++ + +
Sbjct: 153 FFPAEASGGISMVKSLVGPYGDIRLMPTGGITPSNIDNYLAIPQVLACGGTWMVDKKLVT 212
Query: 171 --DLERLKDLVR 180
+ + + L R
Sbjct: 213 NGEWDEIARLTR 224
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate
decarboxylase, ULAD, niaid,CSG bound, biosynthetic
protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A*
Length = 218
Score = 32.6 bits (74), Expect = 0.11
Identities = 7/46 (15%), Positives = 13/46 (28%)
Query: 121 SKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN 166
+ L A L + GGI ++ + I +
Sbjct: 154 DDLDKMRQLSALGIELSITGGIVPEDIYLFEGIKTKTFIAGRALAG 199
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A
{Streptococcus mutans} PDB: 3exs_A* 3ext_A
Length = 221
Score = 32.3 bits (73), Expect = 0.15
Identities = 6/44 (13%), Positives = 13/44 (29%)
Query: 123 AAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN 166
++ L + V GG++ D + I +
Sbjct: 158 LNKVKKLIEMGFRVSVTGGLSVDTLKLFEGVDVFTFIAGRGITE 201
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 32.1 bits (74), Expect = 0.15
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 81 DGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEAL 129
+ LV ++ K + L E G + +D LS + L
Sbjct: 34 ESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSD-LSNEEEVAKL 81
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta
barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP:
c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A*
1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A*
1xbx_A*
Length = 216
Score = 31.9 bits (72), Expect = 0.18
Identities = 7/44 (15%), Positives = 15/44 (34%)
Query: 123 AAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN 166
AI+ L + V GG+ ++ + I + +
Sbjct: 153 ITAIKRLSDMGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRD 196
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc
genomics, center for structural genomics of infectious
DISE csgid; 2.05A {Francisella tularensis subsp}
Length = 246
Score = 31.8 bits (73), Expect = 0.21
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 136 LQVGGGINSDNSLSYIEEGATHVIVT-SYVFNNG 168
L++ GG+N N G V S +FN+
Sbjct: 198 LEIDGGVNPYNIAEIAVCGVN-AFVAGSAIFNSD 230
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A
{Mycobacterium gastri}
Length = 207
Score = 31.5 bits (71), Expect = 0.22
Identities = 13/111 (11%), Positives = 30/111 (27%), Gaps = 8/111 (7%)
Query: 62 IHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGL------TGGHAIML 115
+ + ++ ++ +V + + A A + G G
Sbjct: 83 VLGSADDSTIAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVRALGAKFVEMHAGLDEQAK 142
Query: 116 GADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN 166
L+ A P V GG+ + + GA + ++
Sbjct: 143 PGFDLNGLLAAGEKARVP--FSVAGGVKVATIPAVQKAGAEVAVAGGAIYG 191
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase;
1.65A {Salmonella typhimurium}
Length = 211
Score = 31.7 bits (72), Expect = 0.23
Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 7/111 (6%)
Query: 62 IHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGL------TGGHAIML 115
+ + S ++ +K+ G ++V + L +E G TG
Sbjct: 83 VLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAGADMLAVHTGTDQQAA 142
Query: 116 GADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN 166
G P+ + + + V GGI+S Y G VIV S + +
Sbjct: 143 GRKPIDDLITMLKVRR-KARIAVAGGISSQTVKDYALLGPDVVIVGSAITH 192
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function;
HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Length = 224
Score = 31.3 bits (71), Expect = 0.25
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 5/69 (7%)
Query: 117 ADPLSKAAAIEALHAYPGGLQVG--GGINSDNSLSYIEEGATHVIVTSYVFNNGQM---D 171
A+ I+AL LQ+ GGI N Y+ S+ + +
Sbjct: 139 AEASGGVKMIKALLGPYAQLQIMPTGGIGLHNIRDYLAIPNIVACGGSWFVEKKLIQSNN 198
Query: 172 LERLKDLVR 180
+ + LVR
Sbjct: 199 WDEIGRLVR 207
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal;
HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Length = 212
Score = 31.3 bits (71), Expect = 0.27
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 5/71 (7%)
Query: 117 ADPLSKAAAIEALHAYPGGLQVG--GGINSDNSLSYIEEGATHVIVTSYVFNNGQM---D 171
+ P + V GG+ +N +I+ G + S ++ GQ
Sbjct: 130 SSAFGPQYIKALKAVLPSDIAVFAVGGVTPENLAQWIDAGCAGAGLGSDLYRAGQSVERT 189
Query: 172 LERLKDLVRVV 182
++ V+
Sbjct: 190 AQQAAAFVKAY 200
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol
5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus
pyogenes} SCOP: c.1.2.2
Length = 220
Score = 31.3 bits (72), Expect = 0.27
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 136 LQVGGGINSDNSLSYIEEGATHVIVT-SYVFNNG 168
++V GG+++ + E GA V V SY+F
Sbjct: 173 IEVDGGVDNKTIRACYEAGAN-VFVAGSYLFKAS 205
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown
function, aldolase superfamily, class I aldolase, KDPG
aldolase domain; 1.84A {Oleispira antarctica} PDB:
3vcr_A
Length = 217
Score = 31.4 bits (71), Expect = 0.28
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 5/69 (7%)
Query: 117 ADPLSKAAAIEALHAYPGGLQVG--GGINSDNSLSYIEEGATHVIVTSYVFNNGQM---D 171
A + A ++A +Q GGI+ DN Y+ S++ + + D
Sbjct: 141 ASAIGGAKLLKAWSGPFPDIQFCPTGGISKDNYKEYLGLPNVICAGGSWLTESKLLIEGD 200
Query: 172 LERLKDLVR 180
+
Sbjct: 201 WNEVTRRAS 209
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis,
lyase, phosphate-binding sites; 1.45A {Thermotoga
maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A
1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Length = 253
Score = 31.3 bits (72), Expect = 0.32
Identities = 52/238 (21%), Positives = 94/238 (39%), Gaps = 48/238 (20%)
Query: 53 AVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSA---AEFANLYKEDG--- 106
A R C+D+ G+V + NFE+ + + E Y E G
Sbjct: 3 AKRIIACLDVKDGRVVKGS----------------NFENLRDSGDPVELGKFYSEIGIDE 46
Query: 107 LT--------GGHAIMLGADPLSKAAA---IEALHAYPGGLQVGGGINS-DNSLSYIEEG 154
L ML + + K A I P VGGGI+ + + I G
Sbjct: 47 LVFLDITASVEKRKTML--ELVEKVAEQIDI------P--FTVGGGIHDFETASELILRG 96
Query: 155 ATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVY 214
A V + + N + + + + G Q +V+ + ++ DG++ + T +K + +
Sbjct: 97 ADKVSINTAAVENPSL----ITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGIL 152
Query: 215 LDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADL 272
L + V++ A E L+ +D +G K G D E++ + + +P+ +GG M
Sbjct: 153 LRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHF 210
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo
protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Length = 247
Score = 31.3 bits (72), Expect = 0.34
Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
Query: 136 LQVGGGINS-DNSLSYIEEGATHV-IVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSC 193
+ GG ++ L GA V I T+ V N + + + G Q +V+ +
Sbjct: 82 IIASGGAGKMEHFLEAFLRGADKVSINTAAVENP-----SLITQIAQTFGSQAVVVAIDA 136
Query: 194 RKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLG 253
++ DG++ + T +K + + L + V++ A E L+ +D +G K G D E++ +
Sbjct: 137 KRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVR 196
Query: 254 KYSPIPVTYAGGVTTMADL 272
+ +P+ +GG M
Sbjct: 197 PLTTLPIIASGGAGKMEHF 215
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 31.0 bits (71), Expect = 0.46
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 81 DGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEAL 129
G K+V N+ + AE + E G AI + AD + + I L
Sbjct: 41 LGAKVVVNYANSTKDAE--KVVSEIKALGSDAIAIKAD-IRQVPEIVKL 86
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1
PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Length = 214
Score = 30.6 bits (69), Expect = 0.50
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 140 GGINSDNSLSYIEEGATHVIVTSYVFNNGQM---DLERLKDLVR 180
GGI+ N Y+ + I S++ + D +R+ L R
Sbjct: 163 GGISPANYRDYLALKSVLCIGGSWLVPADALEAGDYDRITKLAR 206
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate,
(beta/alpha)8 barrel, carbohydrate metabolism,
isomerase; HET: S6P; 2.20A {Escherichia coli} PDB:
3ct7_A*
Length = 231
Score = 30.6 bits (70), Expect = 0.57
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 136 LQVGGGINSDNSLSYIEEGATHVIV--TSYVFNN 167
++V G N + GA V + TS +FN+
Sbjct: 170 IEVDGSCNQATYEKLMAAGAD-VFIVGTSGLFNH 202
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin
cycle, oxidative pentose PH pathway; 2.30A {Solanum
tuberosum} SCOP: c.1.2.2
Length = 230
Score = 30.2 bits (69), Expect = 0.73
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 136 LQVGGGINSDNSLSYIEEGATHVIVT-SYVFNNG 168
++V GG+ N+ IE GA +V S VF
Sbjct: 182 IEVDGGVGPKNAYKVIEAGAN-ALVAGSAVFGAP 214
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase,
isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Length = 230
Score = 29.8 bits (68), Expect = 0.79
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 136 LQVGGGINSDNSLSYIEEGATHVIVT-SYVFNNG 168
++V GG+ +N+ +E GA IV S VFN
Sbjct: 176 IEVDGGLKPNNTWQVLEAGAN-AIVAGSAVFNAP 208
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transferase; 2.30A {Thermus thermophilus}
SCOP: c.1.2.1
Length = 252
Score = 29.7 bits (68), Expect = 0.90
Identities = 57/238 (23%), Positives = 95/238 (39%), Gaps = 48/238 (20%)
Query: 53 AVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSA---AEFANLYKEDG--- 106
A R PC+D+H G+V + V NF + + A E A Y E G
Sbjct: 4 AKRIVPCLDVHAGRVVKGV----------------NFVNLRDAGDPVEAARAYDEAGADE 47
Query: 107 LT--------GGHAIMLGADPLSKAAA---IEALHAYPGGLQVGGGINS-DNSLSYIEEG 154
L AI+L D +++ A I P L VGGG+ S +++ + G
Sbjct: 48 LVFLDISATHEERAILL--DVVARVAERVFI------P--LTVGGGVRSLEDARKLLLSG 97
Query: 155 ATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVY 214
A V V S ++ +++L G Q +VL + R + + + + ++
Sbjct: 98 ADKVSVNSAAVRRPEL----IRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLH 153
Query: 215 LDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADL 272
E + + A E L+ +D +G K G D L ++ + +PV +GG M
Sbjct: 154 AVEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHF 211
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum
aerophilum} SCOP: c.1.2.1
Length = 253
Score = 29.8 bits (68), Expect = 1.0
Identities = 53/239 (22%), Positives = 91/239 (38%), Gaps = 48/239 (20%)
Query: 53 AVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSA---AEFANLYKEDG--- 106
A+R PC+DI G + G NF+ + E A Y+E+G
Sbjct: 4 ALRIIPCLDIDGGAKVVVKG--------------VNFQGIREVGDPVEMAVRYEEEGADE 49
Query: 107 LT--------GGHAIMLGADPLSKAAA---IEALHAYPGGLQVGGGINS-DNSLSYIEEG 154
+ G A + D + + A I P + VGGG+ S +++ + G
Sbjct: 50 IAILDITAAPEGRATFI--DSVKRVAEAVSI------P--VLVGGGVRSLEDATTLFRAG 99
Query: 155 ATHV-IVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDV 213
A V + T+ V N + + L R G Q V+ + + Y + ++ + +
Sbjct: 100 ADKVSVNTAAVRNP-----QLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGL 154
Query: 214 YLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADL 272
+ + A E L+ +D +G LG D EL+ + IPV +GG +
Sbjct: 155 DAVKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHF 213
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate
aldolase; structural genomics, NPPSFA; 1.67A {Thermus
thermophilus} PDB: 2yw4_A
Length = 207
Score = 29.4 bits (66), Expect = 1.2
Identities = 8/61 (13%), Positives = 18/61 (29%), Gaps = 2/61 (3%)
Query: 117 ADPLSKAAAIEALHAYPGGLQVG--GGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLER 174
A+P + A ++ GGI ++ Y + S++ +
Sbjct: 133 AEPFQGVRVLRAYAEVFPEVRFLPTGGIKEEHLPHYAALPNLLAVGGSWLLQGNLEAVRA 192
Query: 175 L 175
Sbjct: 193 K 193
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of
[NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET:
APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB:
3vti_A
Length = 761
Score = 30.1 bits (68), Expect = 1.2
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 213 VYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVT 267
+E L+ L AD FL++ D+ IDD + + + + A G
Sbjct: 338 CKDNEEALEKLKDIADVFLLNNRDIV---NRIDDSVTSFNAG-AERIIRRARGYA 388
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS
epimerase family, structural genomics, joint center for
STR genomics, JCSG; 1.91A {Haemophilus somnus}
Length = 237
Score = 29.2 bits (66), Expect = 1.5
Identities = 4/35 (11%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 136 LQVGGGINSDNSLSYIEEGAT-HVIVT-SYVFNNG 168
+ + G + + + + + +V+ S +F+
Sbjct: 190 INIDGSMTLELAKYFKQGTHQIDWLVSGSALFSGE 224
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics,
protein structure initiative, PSI; 2.00A {Plasmodium
falciparum} SCOP: c.1.2.2
Length = 227
Score = 29.1 bits (66), Expect = 1.6
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 136 LQVGGGINSDNSLSYIEEGATHVIVT-SYVFNNG 168
+QV GG+N + + GA +IV + +FN
Sbjct: 176 IQVDGGLNIETTEISASHGAN-IIVAGTSIFNAE 208
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion
protein, cobalamin, precorrin, novel fold, VIT; 2.10A
{Thermotoga maritima}
Length = 266
Score = 28.7 bits (65), Expect = 2.5
Identities = 30/139 (21%), Positives = 60/139 (43%), Gaps = 2/139 (1%)
Query: 136 LQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVG-KQRLVLDLSC 193
+ GG ++ L GA + S E + L + G Q +V+ +
Sbjct: 77 IIASGGAGKMEHFLEAFLAGADKALAASVFHFREIDMRELKEYLKKHGGSGQAVVVAIDA 136
Query: 194 RKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLG 253
++ DG++ + T +K + + L + V++ A E L+ +D +G K G D E++ +
Sbjct: 137 KRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVR 196
Query: 254 KYSPIPVTYAGGVTTMADL 272
+ +P+ +GG M
Sbjct: 197 PLTTLPIIASGGAGKMEHF 215
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate
pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2
PDB: 1h1z_A
Length = 228
Score = 28.3 bits (64), Expect = 2.7
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 136 LQVGGGINSDNSLSYIEEGATHVIVT-SYVFNNG 168
++V GG+ GA IV S +F
Sbjct: 176 IEVDGGLGPSTIDVAASAGAN-CIVAGSSIFGAA 208
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural
genomics, structural genomics consortium, SGC,
contractIle protein; HET: ADP; 2.00A {Homo sapiens}
PDB: 3nwn_A*
Length = 358
Score = 28.4 bits (64), Expect = 2.8
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 29 KNNNSSFYAPSSSLSRPSRLSVRCAVRFRPCID-----IHKGKVKQIVGSTLQDSKDDGT 83
+++ + +R V VR +P D I G K+ + + KD
Sbjct: 4 SHHHHHHSSGLVPRGSGTRKKVHAFVRVKPTDDFAHEMIRYGDDKRSI--DIHLKKDIRR 61
Query: 84 KLVTNFESDKS 94
+V N ++D S
Sbjct: 62 GVVNNQQTDWS 72
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase;
1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Length = 205
Score = 28.2 bits (63), Expect = 2.9
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 140 GGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVR 180
GG+N DN + + G V V S + + +++ +
Sbjct: 157 GGVNLDNVCEWFKAGVLAVGVGSALVKG---TPDEVREKAK 194
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 28.4 bits (62), Expect = 3.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 163 YVFNNGQMDLERLKDLVRVVGKQRLVLDLSC 193
Y + N + RL+ L + R VLDL C
Sbjct: 25 YGYRNPSCEDGRLRVLKPEWFRGRDVLDLGC 55
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE;
1.70A {Homo sapiens} PDB: 3ovq_A* 3ovr_A* 3qc3_A
Length = 228
Score = 27.9 bits (63), Expect = 3.8
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 136 LQVGGGINSDNSLSYIEEGATHVIVT-SYVFN 166
++V GG+ D E GA +IV+ S +
Sbjct: 172 IEVDGGVGPDTVHKCAEAGAN-MIVSGSAIMR 202
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf;
substrate channeling, amidotransferase, TIM-barrel AS A
SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae}
SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A
1ox4_A
Length = 555
Score = 28.2 bits (63), Expect = 4.2
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 227 ADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADL 272
A E L++ +D +G G D EL+ + IPV + G
Sbjct: 466 AGEILLNCIDKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHF 511
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics,
PSI, protein structure initiative, nysgrc; 2.30A
{Legionella pneumophila subsp}
Length = 313
Score = 27.6 bits (62), Expect = 4.9
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 3/22 (13%)
Query: 114 MLGADP---LSKAAAIEALHAY 132
++ D AAA+E H Y
Sbjct: 64 LIDVDQGVLDIIAAALELTHCY 85
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics,
PSI, protein struct initiative, nysgrc; 2.50A {Vibrio
cholerae}
Length = 302
Score = 27.6 bits (62), Expect = 6.0
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Query: 114 MLGADP---LSKAAAIEALHAY 132
MLG + + A+A+E +HAY
Sbjct: 64 MLGCELSDLDTPASAVECIHAY 85
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium
tumefaciens, structural GEN PSI-2, protein structure
initiative; 1.60A {Agrobacterium tumefaciens}
Length = 335
Score = 27.2 bits (61), Expect = 6.4
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 3/22 (13%)
Query: 114 MLGADP---LSKAAAIEALHAY 132
+LG D L AA+E LH Y
Sbjct: 99 LLGGDAEAGLHVGAALECLHCY 120
>4f62_A Geranyltranstransferase; enzyme function initiative, structural
genomics; 2.10A {Marinomonas SP}
Length = 317
Score = 27.2 bits (61), Expect = 6.5
Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Query: 114 MLGADP---LSKAAAIEALHAY 132
++G + AAA+E++HAY
Sbjct: 59 LVGDISSLTDASAAALESIHAY 80
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein
structure initiative, NYSGXRC, biosynthesis,
transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB:
3lvs_A
Length = 297
Score = 27.2 bits (61), Expect = 6.7
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 3/22 (13%)
Query: 114 MLGADP---LSKAAAIEALHAY 132
+ G + A A+EALHAY
Sbjct: 55 IHGISMAQAMPAALAVEALHAY 76
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate,
beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Length = 225
Score = 27.1 bits (60), Expect = 6.8
Identities = 8/44 (18%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 140 GGINSDNSLSYIEEGATHVIVTSYVFNNGQM---DLERLKDLVR 180
GG+N N +Y+ + T+++ ++ + D R++
Sbjct: 173 GGVNPANVRNYMALPNVMCVGTTWMLDSSWIKNGDWARIEACSA 216
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET:
IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB:
1rqi_A* 2for_A*
Length = 299
Score = 27.2 bits (61), Expect = 6.9
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 3/22 (13%)
Query: 114 MLGADP---LSKAAAIEALHAY 132
M G + AAA+E +HAY
Sbjct: 58 MFGVSTNTLDAPAAAVECIHAY 79
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate
synthase; 1.94A {Methylococcus capsulatus}
Length = 324
Score = 27.2 bits (61), Expect = 7.1
Identities = 6/22 (27%), Positives = 9/22 (40%), Gaps = 3/22 (13%)
Query: 114 MLGADP---LSKAAAIEALHAY 132
+G A A+E +H Y
Sbjct: 64 TIGVAADLLDGPACAVEFIHVY 85
>3lsn_A Geranyltranstransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas
fluorescens} PDB: 3lji_A* 3p41_A*
Length = 304
Score = 27.2 bits (61), Expect = 7.2
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
Query: 114 MLGADP---LSKAAAIEALHAY 132
LG P A A+E +HAY
Sbjct: 58 ALGGKPEQANGAACAVELIHAY 79
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural
genomics, joint center for structural genomics; HET:
MSE; 1.23A {Salmonella typhimurium}
Length = 355
Score = 26.8 bits (60), Expect = 8.7
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 215 LDERVLDFLASYADEFLVHGVDVEGKKL-GIDDELVALL 252
LDERV F + D +V +D + L GIDDE ++
Sbjct: 283 LDERVERFASKITDNLVV--IDPKAYALDGIDDEFRWIM 319
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.387
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,964,392
Number of extensions: 320438
Number of successful extensions: 1012
Number of sequences better than 10.0: 1
Number of HSP's gapped: 996
Number of HSP's successfully gapped: 71
Length of query: 316
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 222
Effective length of database: 4,077,219
Effective search space: 905142618
Effective search space used: 905142618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)