RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 021156
(316 letters)
>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 252
Score = 109 bits (274), Expect = 5e-29
Identities = 53/244 (21%), Positives = 91/244 (37%), Gaps = 22/244 (9%)
Query: 53 AVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHA 112
A+R PC+DI G + G Q ++ G E A Y+E+G
Sbjct: 3 ALRIIPCLDIDGGAKVVVKGVNFQGIREVG-----------DPVEMAVRYEEEGADEIAI 51
Query: 113 IMLGADPLSKAAAIEALHA-----YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN 167
+ + A P +A I+++ L GG + +++ + GA V V + N
Sbjct: 52 LDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVRN 111
Query: 168 GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYA 227
Q+ L R G Q V+ + + Y + ++ + + + + A
Sbjct: 112 PQLV----ALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGA 167
Query: 228 DEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTV 287
E L+ +D +G LG D EL+ + IPV +GG + + AG V
Sbjct: 168 GEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGAD--AVLA 225
Query: 288 GSAL 291
S
Sbjct: 226 ASLF 229
>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermotoga
maritima [TaxId: 2336]}
Length = 253
Score = 91.8 bits (227), Expect = 2e-22
Identities = 48/243 (19%), Positives = 92/243 (37%), Gaps = 26/243 (10%)
Query: 55 RFRPCIDIHKGK-VKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAI 113
R C+D+ G+ VK L+DS D E Y E G+ +
Sbjct: 5 RIIACLDVKDGRVVKGSNFENLRDSGD--------------PVELGKFYSEIGIDELVFL 50
Query: 114 MLGADPLSKAAAIEALHAYPG-----GLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNG 168
+ A + +E + GG + + + I GA V + + N
Sbjct: 51 DITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVENP 110
Query: 169 QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYAD 228
+ + + G Q +V+ + ++ DG++ + T +K + + L + V++ A
Sbjct: 111 ----SLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAG 166
Query: 229 EFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVG 288
E L+ +D +G K G D E++ + + +P+ +GG M + +AG
Sbjct: 167 EILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGA--DAALAA 224
Query: 289 SAL 291
S
Sbjct: 225 SVF 227
>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermus
thermophilus [TaxId: 274]}
Length = 251
Score = 89.0 bits (220), Expect = 2e-21
Identities = 53/240 (22%), Positives = 92/240 (38%), Gaps = 26/240 (10%)
Query: 58 PCIDIHKGK-VKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLG 116
PC+D+H G+ VK + L+D+ D E A Y E G + +
Sbjct: 8 PCLDVHAGRVVKGVNFVNLRDAGD--------------PVEAARAYDEAGADELVFLDIS 53
Query: 117 ADPLSKAAAIEALH----AYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQMD 171
A +A ++ + L VGGG+ S +++ + GA V V S
Sbjct: 54 ATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRP--- 110
Query: 172 LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFL 231
E +++L G Q +VL + R + + + + ++ E + + A E L
Sbjct: 111 -ELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEIL 169
Query: 232 VHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291
+ +D +G K G D L ++ + +PV +GG M + AG S
Sbjct: 170 LTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGA--EAALAASVF 227
>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole
carboxamide ribotite isomerase HisA {Streptomyces
coelicolor [TaxId: 1902]}
Length = 239
Score = 65.0 bits (157), Expect = 8e-13
Identities = 42/241 (17%), Positives = 81/241 (33%), Gaps = 24/241 (9%)
Query: 55 RFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAI- 113
P +D+ G+ ++V + GT+ S E A ++ G H +
Sbjct: 4 ELLPAVDVRDGQAVRLVHG------ESGTETSYG-----SPLEAALAWQRSGAEWLHLVD 52
Query: 114 --MLGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMD 171
++A E A +++ GGI D++L+ +
Sbjct: 53 LDAAFGTGDNRALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAALETPEW 112
Query: 172 LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFL 231
+ ++ G + D + + R L E + ++
Sbjct: 113 VAKVI---AEHGDK------IAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNKEGCARYV 163
Query: 232 VHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVD-VTVGSA 290
V + +G G + EL+ + + PV +GGV+++ DL I V+ VG A
Sbjct: 164 VTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKA 223
Query: 291 L 291
L
Sbjct: 224 L 224
>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole
carboxamide ribotite isomerase HisA {Thermotoga maritima
[TaxId: 2336]}
Length = 241
Score = 60.8 bits (146), Expect = 2e-11
Identities = 45/258 (17%), Positives = 84/258 (32%), Gaps = 32/258 (12%)
Query: 58 PCIDIHKGKVKQIV-GSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLG 116
P ID+ +GKV +++ G + E E+G T H + L
Sbjct: 5 PAIDLFRGKVARMIKGRKENTIFYEK-----------DPVELVEKLIEEGFTLIHVVDLS 53
Query: 117 ADPLSKA---AAIEALHAYPGGLQVGGGINSD-NSLSYIEEGATHVIVTSYVFNNGQMDL 172
+ +E L + +Q+GGGI S + + G IV+S V +
Sbjct: 54 NAIENSGENLPVLEKLSEFAEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLK 113
Query: 173 ERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLV 232
+ V V + W ++ + +E +
Sbjct: 114 SLREIDVEPV----------FSLDTRGGRVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVH 163
Query: 233 HGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGI---GRVD-VTVG 288
++ +G D L + + + V AGG+++ L+ + G + V VG
Sbjct: 164 TEIEKDGTLQEHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVG 223
Query: 289 SALDIFGGNLAYKDVVAW 306
A G L + + +
Sbjct: 224 RAF--LEGILTVEVMKRY 239
>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Baker's yeast
(Saccharomyces cerevisiae), His7 [TaxId: 4932]}
Length = 323
Score = 53.6 bits (128), Expect = 9e-09
Identities = 48/299 (16%), Positives = 82/299 (27%), Gaps = 69/299 (23%)
Query: 53 AVRFRPCIDIHKGK------VKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDG 106
R C+D+ K + S G + + + A Y + G
Sbjct: 8 TRRIIACLDVRTNDQGDLVVTKGDQYDVREKSDGKGVRNLGK------PVQLAQKYYQQG 61
Query: 107 --------LTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLS--------- 149
+T L P+ + A L VGGGI +
Sbjct: 62 ADEVTFLNITSFRDCPLKDTPMLEVLKQ-AAKTVFVPLTVGGGIKDIVDVDGTKIPALEV 120
Query: 150 ---YIEEGATHVIVTSYVFNNGQMDLERLK---------DLVRVVGKQRLVLDLSCRK-- 195
Y GA V + + + E + + G Q +V+ + ++
Sbjct: 121 ASLYFRSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVY 180
Query: 196 ----------------------KDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVH 233
K Y ++ D+ + E A A E L++
Sbjct: 181 VNSQADTKNKVFETEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLN 240
Query: 234 GVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVD-VTVGSAL 291
+D +G G D EL+ + IPV + G E+ + R D
Sbjct: 241 CIDKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFL--KTRADACLGAGMF 297
>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase
{Synechocystis sp. PCC 6803 [TaxId: 1148]}
Length = 221
Score = 34.3 bits (78), Expect = 0.011
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 109 GGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNG 168
G I + + ++V GG+ +N+ +E GA ++ S VFN
Sbjct: 147 GQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAP 206
Query: 169 QMD--LERLKDLVR 180
+ +++ R
Sbjct: 207 NYAEAIAGVRNSKR 220
>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 230
Score = 34.3 bits (78), Expect = 0.013
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 136 LQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMD--LERLKDLVR 180
++V GG+ N+ IE GA ++ S VF ++ +K R
Sbjct: 182 IEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTSKR 228
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 31.7 bits (71), Expect = 0.077
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 233 HGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVD-VTVGSAL 291
G ++ D + + I V G + + + +KI G V + VG A+
Sbjct: 159 SGYTPYSRQEAGPDVALIEALCKAGIAVIAEGKIHSPEEAKKINDLG---VAGIVVGGAI 215
>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice
(Oryza sativa) [TaxId: 4530]}
Length = 220
Score = 31.3 bits (70), Expect = 0.11
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 132 YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMD--LERLKDLV 179
++V GG+ GA ++ S +F + + L+ V
Sbjct: 167 PSLDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSV 216
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase
{Streptococcus pyogenes [TaxId: 1314]}
Length = 217
Score = 30.0 bits (67), Expect = 0.26
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 136 LQVGGGINSDNSLSYIEEGATHVIVTSYVFNNG 168
++V GG+++ + E GA + SY+F
Sbjct: 171 IEVDGGVDNKTIRACYEAGANVFVAGSYLFKAS 203
>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima
[TaxId: 2336]}
Length = 202
Score = 29.2 bits (65), Expect = 0.46
Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 109 GGHAIMLGADPLSKAAAIEALHAYPGGLQVG--GGINSDNSLSYIEEGATHVIVTSYVFN 166
G + L + ++A+ ++ GG+N DN + + G V V S +
Sbjct: 123 GHTILKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVK 182
Query: 167 NGQMDLERLKDLVR 180
+ +++ +
Sbjct: 183 G---TPDEVREKAK 193
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Length = 222
Score = 29.4 bits (65), Expect = 0.49
Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 9/86 (10%)
Query: 212 DVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDD-----ELVALLGKYSPIPVTYAGGV 266
D+ E + D G + + + + V G V
Sbjct: 125 DIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNV 184
Query: 267 TTMADLEKIKVAGIGRVD-VTVGSAL 291
T +++ G V VG A+
Sbjct: 185 ITPDMYKRVMDLG---VHCSVVGGAI 207
>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase
{Escherichia coli [TaxId: 562]}
Length = 213
Score = 29.0 bits (64), Expect = 0.57
Identities = 7/46 (15%), Positives = 16/46 (34%)
Query: 121 SKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN 166
+ AI+ L + V GG+ ++ + I + +
Sbjct: 149 ADITAIKRLSDMGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRD 194
>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium
falciparum [TaxId: 5833]}
Length = 221
Score = 27.5 bits (60), Expect = 1.7
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 136 LQVGGGINSDNSLSYIEEGATHVIVTSYVFNNG 168
+QV GG+N + + GA ++ + +FN
Sbjct: 173 IQVDGGLNIETTEISASHGANIIVAGTSIFNAE 205
>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 125
Score = 26.1 bits (57), Expect = 3.0
Identities = 22/118 (18%), Positives = 32/118 (27%), Gaps = 20/118 (16%)
Query: 140 GGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGK 199
G I+ Y+E G + Y+F N + +LE K L + K K G
Sbjct: 3 GEIDGSVFAQYVESG----LPLGYLFYNDEEELEEYKPLFTELAK----------KNRGL 48
Query: 200 YAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSP 257
V+ D R L L D+ +L
Sbjct: 49 MNFVS------IDARKFGRHAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELS 100
>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal
domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Length = 340
Score = 26.9 bits (58), Expect = 4.0
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 243 GIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVD-VTVGSAL 291
G V L+ + S PV G T + +I V G D +
Sbjct: 277 GHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEI-VTK-GYADIIGCARPS 324
>d1b56a_ b.60.1.2 (A:) Epidermal fatty acid binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 25.6 bits (56), Expect = 4.7
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 208 QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI-----DDELVA 250
+KF + D R + ++ D LV + +GK+ I D +LV
Sbjct: 69 EKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVV 116
>d1o8va_ b.60.1.2 (A:) Fatty acid-binding protein homolog 1 {Flat
worm (Echinococcus granulosus) [TaxId: 6210]}
Length = 133
Score = 25.2 bits (55), Expect = 6.8
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 208 QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI-----DDELVA 250
+KF +V D R + L + + + H D + K I +EL A
Sbjct: 69 EKFKEVTPDSREVASLITVENGVMKHEQDDKTKVTYIERVVEGNELKA 116
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 176
Score = 25.1 bits (54), Expect = 9.6
Identities = 16/85 (18%), Positives = 24/85 (28%), Gaps = 4/85 (4%)
Query: 160 VTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERV 219
YV + + L V Q + A T Q DV
Sbjct: 64 AGFYVTQASEENTLILGPFQGKVACQMIQFGKGVCG----TAASTKETQIVPDVNKYPGH 119
Query: 220 LDFLASYADEFLVHGVDVEGKKLGI 244
+ E +V + +GK LG+
Sbjct: 120 IACDGETKSEIVVPIISNDGKTLGV 144
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.387
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,169,186
Number of extensions: 55769
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 24
Length of query: 316
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 231
Effective length of database: 1,240,546
Effective search space: 286566126
Effective search space used: 286566126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.6 bits)