BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021158
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
Length = 328
Score = 401 bits (1031), Expect = e-112, Method: Compositional matrix adjust.
Identities = 189/321 (58%), Positives = 235/321 (73%), Gaps = 5/321 (1%)
Query: 1 MEKIEHTTVATNGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLR 60
M+KIEH VA NG+NMH+A +G GP +LFIHGFPELWYSWR+Q++YL+ RGYRA+APDLR
Sbjct: 8 MKKIEHKMVAVNGLNMHLAELGEGPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLR 67
Query: 61 GYGDTDAPP--SVTSYTALHXXXXXXXXXXXXXXHQ--VFLVGHDWGALIAWYFCLFRPD 116
GYGDT P + ++ LH ++ VF+V HDWGALIAW+ CLFRPD
Sbjct: 68 GYGDTTGAPLNDPSKFSILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPD 127
Query: 117 RVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKF 176
+VKALVN+SV F RNP + + +A+YG+D+YI RFQ PGEIE EFA I ++KK
Sbjct: 128 KVKALVNLSVHFSKRNPKMNVVEGLKAIYGEDHYISRFQVPGEIEAEFAPIGAKSVLKKI 187
Query: 177 LCLRIPKPLCIPKDTGLSTLPD-PSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCWDL 235
L R P P PK GL +PD P AL SWLSEE+++YYA+KF Q GFTG VNYYR +
Sbjct: 188 LTYRDPAPFYFPKGKGLEAIPDAPVALSSWLSEEELDYYANKFEQTGFTGAVNYYRALPI 247
Query: 236 NWELMAPWTGVQIKVPVKYIVGDQDLVYNNKGTKEYIHNGGFKKYVPYLQDVVVMEGVAH 295
NWEL APWTG Q+KVP K+IVG+ DLVY+ G KEYIHNGGFKK VP L++VVV+EG AH
Sbjct: 248 NWELTAPWTGAQVKVPTKFIVGEFDLVYHIPGAKEYIHNGGFKKDVPLLEEVVVLEGAAH 307
Query: 296 FINQEKAEEVGAHIYEFIKKF 316
F++QE+ E+ HIY+FI+KF
Sbjct: 308 FVSQERPHEISKHIYDFIQKF 328
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 400 bits (1028), Expect = e-112, Method: Compositional matrix adjust.
Identities = 188/321 (58%), Positives = 235/321 (73%), Gaps = 5/321 (1%)
Query: 1 MEKIEHTTVATNGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLR 60
M+KIEH VA NG+NMH+A +G GP +LFIHGFPELWYSWR+Q++YL+ RGYRA+APDLR
Sbjct: 8 MKKIEHKMVAVNGLNMHLAELGEGPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLR 67
Query: 61 GYGDTDAPP--SVTSYTALHXXXXXXXXXXXXXXHQ--VFLVGHDWGALIAWYFCLFRPD 116
GYGDT P + ++ LH ++ VF+V HDWGALIAW+ CLFRPD
Sbjct: 68 GYGDTTGAPLNDPSKFSILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPD 127
Query: 117 RVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKF 176
+VKALVN+SV F RNP + + +A++G+D+YI RFQ PGEIE EFA I ++KK
Sbjct: 128 KVKALVNLSVHFSKRNPKMNVVEGLKAIFGEDHYISRFQVPGEIEAEFAPIGAKSVLKKI 187
Query: 177 LCLRIPKPLCIPKDTGLSTLPD-PSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCWDL 235
L R P P PK GL +PD P AL SWLSEE+++YYA+KF Q GFTG VNYYR +
Sbjct: 188 LTYRDPAPFYFPKGKGLEAIPDAPVALSSWLSEEELDYYANKFEQTGFTGAVNYYRALPI 247
Query: 236 NWELMAPWTGVQIKVPVKYIVGDQDLVYNNKGTKEYIHNGGFKKYVPYLQDVVVMEGVAH 295
NWEL APWTG Q+KVP K+IVG+ DLVY+ G KEYIHNGGFKK VP L++VVV+EG AH
Sbjct: 248 NWELTAPWTGAQVKVPTKFIVGEFDLVYHIPGAKEYIHNGGFKKDVPLLEEVVVLEGAAH 307
Query: 296 FINQEKAEEVGAHIYEFIKKF 316
F++QE+ E+ HIY+FI+KF
Sbjct: 308 FVSQERPHEISKHIYDFIQKF 328
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 177 bits (448), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 155/304 (50%), Gaps = 13/304 (4%)
Query: 14 INMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTS 73
+ +H +G+GPAV HGFPE WYSWR Q+ L+ GYR +A D++GYG++ APP +
Sbjct: 29 VRLHFVELGSGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEE 88
Query: 74 YTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNP 133
Y Q +GHDWG ++ WY LF P+RV+A+ +++ PF P NP
Sbjct: 89 YCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANP 148
Query: 134 AVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKFLCLRIPKPLCIPKDTGL 193
+ PL + +A DY + FQEPG E E Q + +R K L + K
Sbjct: 149 NMSPLESIKANPVFDYQL-YFQEPGVAEAELEQ-NLSRTFKSLFRASDESVLSMHKVCEA 206
Query: 194 STL----PDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCWDLNWELMAPWTGVQIK 249
L P+ +L ++EE++ +Y +F + GF GP+N+YR + NW+ G +I
Sbjct: 207 GGLFVNSPEEPSLSRMVTEEEIQFYVQQFKKSGFRGPLNWYRNMERNWKWACKSLGRKIL 266
Query: 250 VPVKYIVGDQDLVYNNKGTKEYIHNGGFKKYVPYLQDVVVMEGVAHFINQEKAEEVGAHI 309
+P + ++D V + ++ + ++P+L+ + E H+ +K EV +
Sbjct: 267 IPALMVTAEKDFVLVPQMSQH------MEDWIPHLKRGHI-EDCGHWTQMDKPTEVNQIL 319
Query: 310 YEFI 313
+++
Sbjct: 320 IKWL 323
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 155/304 (50%), Gaps = 13/304 (4%)
Query: 14 INMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTS 73
+ +H +G+GPAV HGFPE WYSWR Q+ L+ GYR +A D++GYG++ APP +
Sbjct: 248 VRLHFVELGSGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEE 307
Query: 74 YTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNP 133
Y Q +GHDWG ++ WY LF P+RV+A+ +++ PF P NP
Sbjct: 308 YCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANP 367
Query: 134 AVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKFLCLRIPKPLCIPKDTGL 193
+ PL + +A DY + FQEPG E E Q + +R K L + K
Sbjct: 368 NMSPLESIKANPVFDYQL-YFQEPGVAEAELEQ-NLSRTFKSLFRASDESVLSMHKVCEA 425
Query: 194 STL----PDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCWDLNWELMAPWTGVQIK 249
L P+ +L ++EE++ +Y +F + GF GP+N+YR + NW+ G +I
Sbjct: 426 GGLFVNSPEEPSLSRMVTEEEIQFYVQQFKKSGFRGPLNWYRNMERNWKWACKSLGRKIL 485
Query: 250 VPVKYIVGDQDLVYNNKGTKEYIHNGGFKKYVPYLQDVVVMEGVAHFINQEKAEEVGAHI 309
+P + ++D V + ++ + ++P+L+ + E H+ +K EV +
Sbjct: 486 IPALMVTAEKDFVLVPQMSQH------MEDWIPHLKRGHI-EDCGHWTQMDKPTEVNQIL 538
Query: 310 YEFI 313
+++
Sbjct: 539 IKWL 542
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 155/304 (50%), Gaps = 13/304 (4%)
Query: 14 INMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTS 73
+ +H +G+GPAV HGFPE WYSWR Q+ L+ GYR +A D++GYG++ APP +
Sbjct: 44 VRLHFVELGSGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEE 103
Query: 74 YTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNP 133
Y Q +GHDWG ++ WY LF P+RV+A+ +++ PF P NP
Sbjct: 104 YCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANP 163
Query: 134 AVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKFLCLRIPKPLCIPKDTGL 193
+ PL + +A DY + FQEPG E E Q + +R K L + K
Sbjct: 164 NMSPLESIKANPVFDYQL-YFQEPGVAEAELEQ-NLSRTFKSLFRASDESVLSMHKVCEA 221
Query: 194 STL----PDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCWDLNWELMAPWTGVQIK 249
L P+ +L ++EE++ +Y +F + GF GP+N+YR + NW+ G +I
Sbjct: 222 GGLFVNSPEEPSLSRMVTEEEIQFYVQQFKKSGFRGPLNWYRNMERNWKWACKSLGRKIL 281
Query: 250 VPVKYIVGDQDLVYNNKGTKEYIHNGGFKKYVPYLQDVVVMEGVAHFINQEKAEEVGAHI 309
+P + ++D V + ++ + ++P+L+ + E H+ +K EV +
Sbjct: 282 IPALMVTAEKDFVLVPQMSQH------MEDWIPHLKRGHI-EDCGHWTQMDKPTEVNQIL 334
Query: 310 YEFI 313
+++
Sbjct: 335 IKWL 338
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/307 (29%), Positives = 158/307 (51%), Gaps = 14/307 (4%)
Query: 13 GINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVT 72
GI +H +G+GPA+ HGFPE W+SWR Q+ L+ G+R +A D++GYGD+ +PP +
Sbjct: 245 GIRLHFVEMGSGPALCLCHGFPESWFSWRYQIPALAQAGFRVLAIDMKGYGDSSSPPEIE 304
Query: 73 SYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRN 132
Y Q +GHDW ++ W LF P+RV+A+ +++ PF P +
Sbjct: 305 EYAMELLCKEMVTFLDKLGIPQAVFIGHDWAGVMVWNMALFYPERVRAVASLNTPFMPPD 364
Query: 133 PAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKFLCLRIPKP-LCIPKDT 191
P V P+ R++ +Y + FQEPG E E + + +R K F + + K T
Sbjct: 365 PDVSPMKVIRSIPVFNYQL-YFQEPGVAEAELEK-NMSRTFKSFFRASDETGFIAVHKAT 422
Query: 192 GLSTL----PDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCWDLNWELMAPWTGVQ 247
+ + P+ L +EE++ +Y +F + GF GP+N+YR + NW+ G +
Sbjct: 423 EIGGILVNTPEDPNLSKITTEEEIEFYIQQFKKTGFRGPLNWYRNTERNWKWSCKGLGRK 482
Query: 248 IKVPVKYIVGDQDLVYNNKGTKEYIHNGGFKKYVPYLQDVVVMEGVAHFINQEKAEEVGA 307
I VP + ++D+V + +K +K++P+L+ + E H+ EK EV
Sbjct: 483 ILVPALMVTAEKDIVLRPEMSK------NMEKWIPFLKRGHI-EDCGHWTQIEKPTEVNQ 535
Query: 308 HIYEFIK 314
+ ++++
Sbjct: 536 ILIKWLQ 542
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 94/354 (26%), Positives = 150/354 (42%), Gaps = 53/354 (14%)
Query: 6 HTTVATNGINMHVASIG----TGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRG 61
H + G +H + GP V+ +HGFPE WYSWR+Q+ L+ GYR +A D RG
Sbjct: 11 HRILNCRGTRIHAVADSPPDQQGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRG 70
Query: 62 YGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKAL 121
YG + +Y Q F+VGHDWGA +AW F PDR +
Sbjct: 71 YGRSSKYRVQKAYRIKELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGV 130
Query: 122 VNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPG----------------EIEEEF- 164
V +SVPF R P + F DY++ PG EIEE+
Sbjct: 131 VGISVPFAGRGVIGLPGSPFGERRPSDYHL-ELAGPGRVWYQDYFAVQDGIITEIEEDLR 189
Query: 165 --------------------AQIDTARLMKKFLCLRIPK--PLCIPKDTGL-STLPDPSA 201
A +D ++ + + + PLC+ + L P
Sbjct: 190 GWLLGLTYTVSGEGMMAATKAAVDAGVDLESMDPIDVIRAGPLCMAEGARLKDAFVYPET 249
Query: 202 LPSWLSEEDVNYYASKFNQKGFTGPVNYYRCWDLNWELMAPWTGVQIKVPVKYIVGDQDL 261
+P+W +E D+++Y +F + GF GP+++Y D +W +A G + P +I G D+
Sbjct: 250 MPAWFTEADLDFYTGEFERSGFGGPLSFYHNIDNDWHDLADQQGKPLTPPALFIGGQYDV 309
Query: 262 --VYNNKGTKEYIHNGGFKKYVPYLQDVVVMEGVAHFINQEKAEEVGAHIYEFI 313
++ + + + +P + ++ V H+I QE EE + +F+
Sbjct: 310 GTIWGAQAIERA------HEVMPNYRGTHMIADVGHWIQQEAPEETNRLLLDFL 357
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 94/354 (26%), Positives = 150/354 (42%), Gaps = 53/354 (14%)
Query: 6 HTTVATNGINMHVASIG----TGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRG 61
H + G +H + GP V+ +HGFPE WYSWR+Q+ L+ GYR +A D RG
Sbjct: 5 HRILNCRGTRIHAVADSPPDQQGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRG 64
Query: 62 YGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKAL 121
YG + +Y Q F+VGHDWGA +AW F PDR +
Sbjct: 65 YGRSSKYRVQKAYRIKELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGV 124
Query: 122 VNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPG----------------EIEEEF- 164
V +SVPF R P + F DY++ PG EIEE+
Sbjct: 125 VGISVPFAGRGVIGLPGSPFGERRPSDYHL-ELAGPGRVWYQDYFAVQDGIITEIEEDLR 183
Query: 165 --------------------AQIDTARLMKKFLCLRIPK--PLCIPKDTGL-STLPDPSA 201
A +D ++ + + + PLC+ + L P
Sbjct: 184 GWLLGLTYTVSGEGMMAATKAAVDAGVDLESMDPIDVIRAGPLCMAEGARLKDAFVYPET 243
Query: 202 LPSWLSEEDVNYYASKFNQKGFTGPVNYYRCWDLNWELMAPWTGVQIKVPVKYIVGDQDL 261
+P+W +E D+++Y +F + GF GP+++Y D +W +A G + P +I G D+
Sbjct: 244 MPAWFTEADLDFYTGEFERSGFGGPLSFYHNIDNDWHDLADQQGKPLTPPALFIGGQYDV 303
Query: 262 --VYNNKGTKEYIHNGGFKKYVPYLQDVVVMEGVAHFINQEKAEEVGAHIYEFI 313
++ + + + +P + ++ V H+I QE EE + +F+
Sbjct: 304 GTIWGAQAIERA------HEVMPNYRGTHMIADVGHWIQQEAPEETNRLLLDFL 351
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 55/105 (52%)
Query: 25 PAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXXX 84
P VL IHG E +W+ L L+++GYR +APDL G+G + VTSY++L
Sbjct: 27 PVVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHGRSSHLEMVTSYSSLTFLAQID 86
Query: 85 XXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 129
+ LVGH GA++A RP ++K L+ + +P P
Sbjct: 87 RVIQELPDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLP 131
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Query: 8 TVATNGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDA 67
TV G + G+G VLF+HG P Y WRN + Y+ + GYRA+APDL G GD+ A
Sbjct: 13 TVEVEGATIAYVDEGSGQPVLFLHGNPTSSYLWRNIIPYVVAAGYRAVAPDLIGXGDS-A 71
Query: 68 PPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVP 127
P + H V ++ HDWG++I PDRV A+
Sbjct: 72 KPDIEYRLQDHVAYXDGFIDALGLDDXVLVI-HDWGSVIGXRHARLNPDRVAAVAFXEAL 130
Query: 128 FPPRNP 133
PP P
Sbjct: 131 VPPALP 136
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 5 EHTTVATNGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGD 64
E T V T +++ G G +L +HG+P+ W +++ L + + +A DLRGYGD
Sbjct: 6 EQTIVDTTEARINLVKAGHGAPLLLLHGYPQTHVMW-HKIAPLLANNFTVVATDLRGYGD 64
Query: 65 TDAPPSV---TSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKAL 121
+ P SV +Y+ Q ++VGHD GA +A L P RVK L
Sbjct: 65 SSRPASVPHHINYSKRVMAQDQVEVMSKLGYEQFYVVGHDRGARVAHRLALDHPHRVKKL 124
Query: 122 VNMSV 126
+ +
Sbjct: 125 ALLDI 129
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 9/140 (6%)
Query: 2 EKIEHTTVATNGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRG 61
E +H V + +H G GP +L +HG+P W+ W + L+ Y I PDLRG
Sbjct: 7 EDFKHYEVQLPDVKIHYVREGAGPTLLLLHGWPGFWWEWSKVIGPLAEH-YDVIVPDLRG 65
Query: 62 YGDTDAPP--SVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRV- 118
+GD++ P ++ Y+ + ++VGHD+ A++ F DRV
Sbjct: 66 FGDSEKPDLNDLSKYSLDKAADDQAALLDALGIEKAYVVGHDFAAIVLHKFIRKYSDRVI 125
Query: 119 KALVNMSVPFPPRNPAVRPL 138
KA + F P P P+
Sbjct: 126 KAAI-----FDPIQPDFGPV 140
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 7 TTVATNGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD 66
T VA +G ++ G+G VLF HG+P W Q+ YLSSRGYR IA D RG+G +D
Sbjct: 2 TFVAKDGTQIYFKDWGSGKPVLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSD 61
Query: 67 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGAL-IAWYFCLFRPDRVKALVNMS 125
P + Y +V LVG G +A Y RV LV +
Sbjct: 62 QPWTGNDYDTF--ADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
Query: 126 VPFP-----PRNPAVRPLNNF 141
P P P PL+ F
Sbjct: 120 AVTPIFGQKPDYPQGVPLDVF 140
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 7 TTVATNGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD 66
T VA +G ++ G+G VLF HG+P W Q+ YLSSRGYR IA D RG+G +D
Sbjct: 2 TFVAKDGTQIYFKDWGSGKPVLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSD 61
Query: 67 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGAL-IAWYFCLFRPDRVKALVNMS 125
P + Y +V LVG G +A Y RV LV +
Sbjct: 62 QPWTGNDYDTF--ADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
Query: 126 VPFP-----PRNPAVRPLNNF 141
P P P PL+ F
Sbjct: 120 AVTPLFGQKPDYPQGVPLDVF 140
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 100/234 (42%), Gaps = 31/234 (13%)
Query: 9 VATNGINMHVASIG--TGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD 66
V G MH +G G VLF+HG P Y WRN + +++ +R IAPDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 67 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 126
P Y +V LV HDWG+ + +++ P+RVK + M
Sbjct: 74 KPD--LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEF 131
Query: 127 PFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTAR-LMKKFLCLRIPKPL 185
+RP+ + D+++ E+ EE + AR + F + + L
Sbjct: 132 --------IRPIPTW-----DEFHHT------EVAEEQDHAEAARETFQAFRTADVGREL 172
Query: 186 CIPKDTGLSTLPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCWDLNWEL 239
I ++ + + P + L+E ++++Y ++ F PV+ W EL
Sbjct: 173 IIDQNAFIERV-LPGGVVRPLTEVEMDHY-----REPFLKPVDREPLWRFPNEL 220
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 100/234 (42%), Gaps = 31/234 (13%)
Query: 9 VATNGINMHVASIG--TGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD 66
V G MH +G G VLF+HG P Y WRN + +++ +R IAPDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 67 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 126
P Y +V LV HDWG+ + +++ P+RVK + M
Sbjct: 74 KPD--LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEF 131
Query: 127 PFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTAR-LMKKFLCLRIPKPL 185
+RP+ + D+++ E+ EE + AR + F + + L
Sbjct: 132 --------IRPIPTW-----DEFHHT------EVAEEQDHAEAARETFQAFRTADVGREL 172
Query: 186 CIPKDTGLSTLPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCWDLNWEL 239
I ++ + + P + L+E ++++Y ++ F PV+ W EL
Sbjct: 173 IIDQNAFIERV-LPGGVVRPLTEVEMDHY-----REPFLKPVDREPLWRFPNEL 220
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 9 VATNGINMHVASIG--TGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD 66
V G MH +G G VLF+HG P Y WRN + +++ +R IAPDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 67 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 126
P Y +V LV HDWG+ + +++ P+RVK + M
Sbjct: 74 KPD--LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEF 131
Query: 127 --PFP 129
PFP
Sbjct: 132 IRPFP 136
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 9 VATNGINMHVASIG--TGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD 66
V G MH +G G VLF+HG P Y WRN + +++ +R IAPDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 67 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 126
P Y +V LV HDWG+ + +++ P+RVK + M
Sbjct: 74 KPD--LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEF 131
Query: 127 --PFP 129
PFP
Sbjct: 132 IRPFP 136
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 9 VATNGINMHVASIG--TGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD 66
V G MH +G G VLF+HG P Y WRN + +++ +R IAPDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 67 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 126
P Y +V LV HDWG+ + +++ P+RVK + M
Sbjct: 74 KPD--LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEF 131
Query: 127 --PFP 129
PFP
Sbjct: 132 IRPFP 136
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 9 VATNGINMHVASIG--TGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD 66
V G MH +G G VLF+HG P Y WRN + +++ +R IAPDL G G +D
Sbjct: 12 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 70
Query: 67 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 126
P Y +V LV HDWG+ + +++ P+RVK + M
Sbjct: 71 KPD--LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEF 128
Query: 127 --PFP 129
PFP
Sbjct: 129 IRPFP 133
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Query: 9 VATNGINMHVASIG--TGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD 66
V G MH +G G VLF+HG P Y WRN + +++ +R IAPDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 67 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMS 125
P Y +V LV HDWG+ + +++ P+RVK + M
Sbjct: 74 KPD--LDYFFDDHVRYLDAFIEAVGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Query: 9 VATNGINMHVASIG--TGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD 66
V G MH +G G VLF+HG P Y WRN + +++ +R IAPDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 67 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMS 125
P Y +V LV HDWG+ + +++ P+RVK + M
Sbjct: 74 KPD--LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Query: 9 VATNGINMHVASIG--TGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD 66
V G MH +G G VLF+HG P Y WRN + +++ +R IAPDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 67 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMS 125
P Y +V LV HDWG+ + +++ P+RVK + M
Sbjct: 74 KPD--LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Query: 9 VATNGINMHVASIG--TGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD 66
V G MH +G G VLF+HG P Y WRN + +++ +R IAPDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 67 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMS 125
P Y +V LV HDWG+ + +++ P+RVK + M
Sbjct: 74 KPD--LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 60/141 (42%), Gaps = 8/141 (5%)
Query: 7 TTVATNGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD 66
T VA +G ++ G+G VLF HG+ W Q+ YLSSRGYR IA D RG+G +D
Sbjct: 2 TFVAKDGTQIYFKDWGSGKPVLFSHGWILDADMWEYQMEYLSSRGYRTIAFDRRGFGRSD 61
Query: 67 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGAL-IAWYFCLFRPDRVKALVNMS 125
P + Y +V LVG G +A Y RV LV +
Sbjct: 62 QPWTGNDYDTF--ADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
Query: 126 VPFP-----PRNPAVRPLNNF 141
P P P PL+ F
Sbjct: 120 AVTPLFGQKPDYPQGVPLDVF 140
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Query: 9 VATNGINMHVASIG--TGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD 66
V G MH +G G VLF+HG P Y WRN + +++ +R IAPDL G G +D
Sbjct: 12 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 70
Query: 67 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMS 125
P Y +V LV HDWG+ + +++ P+RVK + M
Sbjct: 71 KPD--LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 127
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 60/141 (42%), Gaps = 8/141 (5%)
Query: 7 TTVATNGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD 66
T VA +G ++ G+G VLF HG+ W Q+ YLSSRGYR IA D RG+G +D
Sbjct: 2 TFVAKDGTQIYFKDWGSGKPVLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSD 61
Query: 67 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGAL-IAWYFCLFRPDRVKALVNMS 125
P + Y +V LVG G +A Y RV LV +
Sbjct: 62 QPWTGNDYDTF--ADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
Query: 126 VPFP-----PRNPAVRPLNNF 141
P P P PL+ F
Sbjct: 120 AVTPLFGQKPDYPQGVPLDVF 140
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 60/141 (42%), Gaps = 8/141 (5%)
Query: 7 TTVATNGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD 66
T VA +G ++ G+G VLF HG+ W Q+ YLSSRGYR IA D RG+G +D
Sbjct: 2 TFVAKDGTQIYFKDWGSGKPVLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSD 61
Query: 67 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGAL-IAWYFCLFRPDRVKALVNMS 125
P + Y +V LVG G +A Y RV LV +
Sbjct: 62 QPWTGNDYDTF--ADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
Query: 126 VPFP-----PRNPAVRPLNNF 141
P P P PL+ F
Sbjct: 120 AVTPLFGQKPDYPQGVPLDVF 140
>pdb|3A2L|A Chain A, Crystal Structure Of Dbja (Mutant Dbja Delta)
pdb|3A2L|B Chain B, Crystal Structure Of Dbja (Mutant Dbja Delta)
Length = 309
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 67/166 (40%), Gaps = 18/166 (10%)
Query: 3 KIEHTTVATNGINMHVASIGT--GPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLR 60
+IE G +M G P VLF+HG P + WRN +L L S IAPDL
Sbjct: 6 EIEIRRAPVLGSSMAYRETGAQDAPVVLFLHGNPTSSHIWRN-ILPLVSPVAHCIAPDLI 64
Query: 61 GYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKA 120
G+G + P +Y +LV DWG +A++ RPD V+
Sbjct: 65 GFGQSGKPD--IAYRFFDHVRYLDAFIEQRGVTSAYLVAQDWGTALAFHLAARRPDFVRG 122
Query: 121 LVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICR-----FQEPGEIE 161
L M +RP+ ++ + D R F+ PGE E
Sbjct: 123 LAFMEF--------IRPMPTWQDFHQDHAEAARAVFRKFRTPGEGE 160
>pdb|2O2H|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With
1,2-Dichloroethane
pdb|2O2I|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With 1,3-Propandiol
Length = 300
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 123/323 (38%), Gaps = 66/323 (20%)
Query: 13 GINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD----AP 68
G M G G A++F HG P Y WRN + +L G R +A DL G G +D +
Sbjct: 19 GKRMAYIDEGKGDAIVFQHGNPTSSYLWRNIMPHLEGLG-RLVACDLIGMGASDKLSPSG 77
Query: 69 PSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPF 128
P SY H V LV HDWG+ + + + DRV+ + M
Sbjct: 78 PDRYSYGEQRDFLFALWDALDLGDH-VVLVLHDWGSALGFDWANQHRDRVQGIAFMEAIV 136
Query: 129 PPRN-----PAVRPL-NNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKFLCLRIP 182
P PAVR + FR+ G EP +E +++ L
Sbjct: 137 TPMTWADWPPAVRGVFQGFRSPQG---------EPMALEHNI-------FVERVL----- 175
Query: 183 KPLCIPKDTGLSTLPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCWDLNWELMAP 242
P A+ LS+E++N+Y F G R L+W P
Sbjct: 176 ----------------PGAILRQLSDEEMNHYRRPFVNGGED------RRPTLSWPRNLP 213
Query: 243 WTGVQIKVPVKYIVGDQDLVYNNKGTKEYIH-------NGGFKKYVPYL--QDVVVMEGV 293
G +V V + + + K +I+ G + YV Q + + GV
Sbjct: 214 IDGEPAEV-VALVNEYRSWLEETDMPKLFINAEPGAIITGRIRDYVRSWPNQTEITVPGV 272
Query: 294 AHFINQEKAEEVGAHIYEFIKKF 316
HF+ ++ EE+GA I +F+++
Sbjct: 273 -HFVQEDSPEEIGAAIAQFVRRL 294
>pdb|2QVB|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
pdb|2QVB|B Chain B, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
Length = 297
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 123/323 (38%), Gaps = 66/323 (20%)
Query: 13 GINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD----AP 68
G M G G A++F HG P Y WRN + +L G R +A DL G G +D +
Sbjct: 17 GKRMAYIDEGKGDAIVFQHGNPTSSYLWRNIMPHLEGLG-RLVACDLIGMGASDKLSPSG 75
Query: 69 PSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPF 128
P SY H V LV HDWG+ + + + DRV+ + M
Sbjct: 76 PDRYSYGEQRDFLFALWDALDLGDH-VVLVLHDWGSALGFDWANQHRDRVQGIAFMEAIV 134
Query: 129 PPRN-----PAVRPL-NNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKFLCLRIP 182
P PAVR + FR+ G EP +E +++ L
Sbjct: 135 TPMTWADWPPAVRGVFQGFRSPQG---------EPMALEHNI-------FVERVL----- 173
Query: 183 KPLCIPKDTGLSTLPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCWDLNWELMAP 242
P A+ LS+E++N+Y F G R L+W P
Sbjct: 174 ----------------PGAILRQLSDEEMNHYRRPFVNGGED------RRPTLSWPRNLP 211
Query: 243 WTGVQIKVPVKYIVGDQDLVYNNKGTKEYIH-------NGGFKKYVPYL--QDVVVMEGV 293
G +V V + + + K +I+ G + YV Q + + GV
Sbjct: 212 IDGEPAEV-VALVNEYRSWLEETDMPKLFINAEPGAIITGRIRDYVRSWPNQTEITVPGV 270
Query: 294 AHFINQEKAEEVGAHIYEFIKKF 316
HF+ ++ EE+GA I +F+++
Sbjct: 271 -HFVQEDSPEEIGAAIAQFVRRL 292
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa, With Bound Mfa
Length = 301
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 5 EHTTVATNGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGD 64
++ T+ T+ + VA G+GP +L +HG+P+ +W L+ Y + DLRGYG+
Sbjct: 12 DYLTLHTSAARLRVAVKGSGPPLLLLHGYPQTHLAWHRIAPRLAE-DYSVVLADLRGYGE 70
Query: 65 TDA-PPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVN 123
+ A Y+ + ++GHD GA + + L P V A V+
Sbjct: 71 SRALDEEGADYSKAALARDQLETMGQLGFERFAVIGHDRGARVGYRLALDHPQAVAAFVS 130
Query: 124 MSV 126
++V
Sbjct: 131 LTV 133
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 4/120 (3%)
Query: 11 TNGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPS 70
+G+ +H G GP V+ +HGF + WY W + L+ R + IAPDL G G ++ P
Sbjct: 17 VDGVKLHYVKGGQGPLVMLVHGFGQTWYEWHQLMPELAKR-FTVIAPDLPGLGQSEPPK- 74
Query: 71 VTSYTALHXXXXXXXXXXXXXXHQVF-LVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 129
T Y+ + F LV HD G + + + LV M P P
Sbjct: 75 -TGYSGEQVAVYLHKLARQFSPDRPFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAPIP 133
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 4/120 (3%)
Query: 11 TNGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPS 70
+G+ +H G GP V+ +HGF + WY W + L+ R + IAPDL G G ++ P
Sbjct: 17 VDGVKLHYVKGGQGPLVMLVHGFGQTWYEWHQLMPELAKR-FTVIAPDLPGLGQSEPPK- 74
Query: 71 VTSYTALHXXXXXXXXXXXXXXHQVF-LVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 129
T Y+ + F LV HD G + + + LV M P P
Sbjct: 75 -TGYSGEQVAVYLHKLARQFSPDRPFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAPIP 133
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 4/120 (3%)
Query: 11 TNGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPS 70
+G+ +H G GP V+ +HGF + WY W + L+ R + IAPDL G G ++ P
Sbjct: 17 VDGVKLHYVKGGQGPLVMLVHGFGQTWYEWHQLMPELAKR-FTVIAPDLPGLGQSEPPK- 74
Query: 71 VTSYTALHXXXXXXXXXXXXXXHQVF-LVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 129
T Y+ + F LV HD G + + + LV M P P
Sbjct: 75 -TGYSGEQVAVYLHKLARQFSPDRPFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAPIP 133
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 4/128 (3%)
Query: 2 EKIEHTTVATNGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRG 61
E E V + ++ G+GPA+L +HGFP+ + W L++ Y + DLRG
Sbjct: 3 EGFERRLVDVGDVTINCVVGGSGPALLLLHGFPQNLHMWARVAPLLANE-YTVVCADLRG 61
Query: 62 YGDTDAP---PSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRV 118
YG + P P +Y+ + LVGHD G L PD V
Sbjct: 62 YGGSSKPVGAPDHANYSFRAMASDQRELMRTLGFERFHLVGHDRGGRTGHRMALDHPDSV 121
Query: 119 KALVNMSV 126
+L + +
Sbjct: 122 LSLAVLDI 129
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Query: 3 KIEHTTVATNGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGY 62
+ + V + IN + + AV+F+HG Y WR+ + ++ R I PDL G
Sbjct: 22 RCKQMNVLDSFINYYDSEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGM 80
Query: 63 GDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALV 122
G + + + H ++ VGHDWGA +A+++ DR+KA+V
Sbjct: 81 GKSGKSGNGSYRLLDHYKYLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIV 140
Query: 123 NMS 125
+M
Sbjct: 141 HME 143
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Query: 3 KIEHTTVATNGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGY 62
+ + V + IN + + AV+F+HG Y WR+ + ++ R I PDL G
Sbjct: 22 RCKQMNVLDSFINYYDSEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGM 80
Query: 63 GDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALV 122
G + + + H ++ VGHDWGA +A+++ DR+KA+V
Sbjct: 81 GKSGKSGNGSYRLLDHYKYLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIV 140
Query: 123 NMS 125
+M
Sbjct: 141 HME 143
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Query: 3 KIEHTTVATNGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGY 62
+ + V + IN + + AV+F+HG Y WR+ + ++ R I PDL G
Sbjct: 23 RCKQMNVLDSFINYYDSEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGM 81
Query: 63 GDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALV 122
G + + + H ++ VGHDWGA +A+++ DR+KA+V
Sbjct: 82 GKSGKSGNGSYRLLDHYKYLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIV 141
Query: 123 NMS 125
+M
Sbjct: 142 HME 144
>pdb|3A2M|A Chain A, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2M|B Chain B, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2N|A Chain A, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|B Chain B, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|E Chain E, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|F Chain F, Crystal Structure Of Dbja (Wild Type Type Ii P21)
Length = 312
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 52/124 (41%), Gaps = 5/124 (4%)
Query: 3 KIEHTTVATNGINMHVASIGT--GPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLR 60
+IE G +M G P VLF+HG P + WRN +L L S IAPDL
Sbjct: 6 EIEIRRAPVLGSSMAYRETGAQDAPVVLFLHGNPTSSHIWRN-ILPLVSPVAHCIAPDLI 64
Query: 61 GYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKA 120
G+G + P +Y +LV DWG +A++ RPD V+
Sbjct: 65 GFGQSGKPD--IAYRFFDHVRYLDAFIEQRGVTSAYLVAQDWGTALAFHLAARRPDFVRG 122
Query: 121 LVNM 124
L M
Sbjct: 123 LAFM 126
>pdb|3AFI|E Chain E, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|A Chain A, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|B Chain B, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|F Chain F, Crystal Structure Of Dbja (His-Dbja)
Length = 316
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 52/124 (41%), Gaps = 5/124 (4%)
Query: 3 KIEHTTVATNGINMHVASIGT--GPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLR 60
+IE G +M G P VLF+HG P + WRN +L L S IAPDL
Sbjct: 6 EIEIRRAPVLGSSMAYRETGAQDAPVVLFLHGNPTSSHIWRN-ILPLVSPVAHCIAPDLI 64
Query: 61 GYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKA 120
G+G + P +Y +LV DWG +A++ RPD V+
Sbjct: 65 GFGQSGKPD--IAYRFFDHVRYLDAFIEQRGVTSAYLVAQDWGTALAFHLAARRPDFVRG 122
Query: 121 LVNM 124
L M
Sbjct: 123 LAFM 126
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 6 HTTVATNGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDT 65
V + IN + + AV+F+HG Y WR+ + ++ R I PDL G G +
Sbjct: 26 QMNVLDSFINYYDSEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKS 84
Query: 66 DAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMS 125
+ + H ++ VGHDWGA +A+++ DR+KA+V+M
Sbjct: 85 GKSGNGSYRLLDHYKYLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHME 144
>pdb|1IZ7|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26 At
1.6 A Resolution
pdb|1IZ8|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26
With 1,3-Propanediol, A Product Of Debromidation Of
Dibrompropane, At 2.0a Resolution
pdb|1K5P|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.8a Resolution
pdb|1K63|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis With Ut26
2-Bromo-2-Propene-1-Ol At 1.8a Resolution
pdb|1K6E|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis Ut26 With 1,2-Propanediol
(Product Of Dehalogenation Of 1,2-Dibromopropane) At
1.85a
Length = 295
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 119/326 (36%), Gaps = 56/326 (17%)
Query: 5 EHTTVATNGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGD 64
E + G M GTG +LF HG P Y WRN + + + G R IA DL G GD
Sbjct: 9 EKKFIEIKGRRMAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGMGD 67
Query: 65 TDA--PPSVTSYT-ALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKAL 121
+D P Y A H +V LV HDWG+ + + + +RV+ +
Sbjct: 68 SDKLDPSGPERYAYAEHRDYLDALWEALDLGDRVVLVVHDWGSALGFDWARRHRERVQGI 127
Query: 122 VNMSVPFPPRNPAVRPLNN------FRAVYGDDYYICR--FQE---PGEIEEEFAQIDTA 170
M P A P + FR+ G++ + F E PG I ++ + A
Sbjct: 128 AYMEAIAMPIEWADFPEQDRDLFQAFRSQAGEELVLQDNVFVEQVLPGLILRPLSEAEMA 187
Query: 171 RLMKKFLCLRIPKPLCIPKDTGLSTLPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYY 230
+ FL + TL P +P + DV A +
Sbjct: 188 AYREPFLAA---------GEARRPTLSWPRQIPIAGTPADVVAIARDYA----------- 227
Query: 231 RCWDLNWELMAPWTGVQIKVPVKYIVGDQDLVYNNKGTKEYIHNGGFKKYVPYLQDVVVM 290
W +P +P +I + + + F + P ++ V
Sbjct: 228 -----GWLSESP-------IPKLFINAEPGALTTGRMRD-------FCRTWPNQTEITV- 267
Query: 291 EGVAHFINQEKAEEVGAHIYEFIKKF 316
AHFI ++ +E+GA I F+++
Sbjct: 268 -AGAHFIQEDSPDEIGAAIAAFVRRL 292
>pdb|1MJ5|A Chain A, Linb (Haloalkane Dehalogenase) From Sphingomonas
Paucimobilis Ut26 At Atomic Resolution
Length = 302
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 119/326 (36%), Gaps = 56/326 (17%)
Query: 5 EHTTVATNGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGD 64
E + G M GTG +LF HG P Y WRN + + + G R IA DL G GD
Sbjct: 10 EKKFIEIKGRRMAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGMGD 68
Query: 65 TDA--PPSVTSYT-ALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKAL 121
+D P Y A H +V LV HDWG+ + + + +RV+ +
Sbjct: 69 SDKLDPSGPERYAYAEHRDYLDALWEALDLGDRVVLVVHDWGSALGFDWARRHRERVQGI 128
Query: 122 VNMSVPFPPRNPAVRPLNN------FRAVYGDDYYICR--FQE---PGEIEEEFAQIDTA 170
M P A P + FR+ G++ + F E PG I ++ + A
Sbjct: 129 AYMEAIAMPIEWADFPEQDRDLFQAFRSQAGEELVLQDNVFVEQVLPGLILRPLSEAEMA 188
Query: 171 RLMKKFLCLRIPKPLCIPKDTGLSTLPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYY 230
+ FL + TL P +P + DV A +
Sbjct: 189 AYREPFLAA---------GEARRPTLSWPRQIPIAGTPADVVAIARDYA----------- 228
Query: 231 RCWDLNWELMAPWTGVQIKVPVKYIVGDQDLVYNNKGTKEYIHNGGFKKYVPYLQDVVVM 290
W +P +P +I + + + F + P ++ V
Sbjct: 229 -----GWLSESP-------IPKLFINAEPGALTTGRMRD-------FCRTWPNQTEITV- 268
Query: 291 EGVAHFINQEKAEEVGAHIYEFIKKF 316
AHFI ++ +E+GA I F+++
Sbjct: 269 -AGAHFIQEDSPDEIGAAIAAFVRRL 293
>pdb|1CV2|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.6 A Resolution
pdb|1D07|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 With 1,3-Propanediol, A Product Of
Debromidation Of Dibrompropane, At 2.0a Resolution
pdb|2BFN|A Chain A, The Crystal Structure Of The Complex Of The Haloalkane
Dehalogenase Linb With The Product Of Dehalogenation
Reaction 1,2-Dichloropropane
Length = 296
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 119/326 (36%), Gaps = 56/326 (17%)
Query: 5 EHTTVATNGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGD 64
E + G M GTG +LF HG P Y WRN + + + G R IA DL G GD
Sbjct: 10 EKKFIEIKGRRMAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGMGD 68
Query: 65 TDA--PPSVTSYT-ALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKAL 121
+D P Y A H +V LV HDWG+ + + + +RV+ +
Sbjct: 69 SDKLDPSGPERYAYAEHRDYLDALWEALDLGDRVVLVVHDWGSALGFDWARRHRERVQGI 128
Query: 122 VNMSVPFPPRNPAVRPLNN------FRAVYGDDYYICR--FQE---PGEIEEEFAQIDTA 170
M P A P + FR+ G++ + F E PG I ++ + A
Sbjct: 129 AYMEAIAMPIEWADFPEQDRDLFQAFRSQAGEELVLQDNVFVEQVLPGLILRPLSEAEMA 188
Query: 171 RLMKKFLCLRIPKPLCIPKDTGLSTLPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYY 230
+ FL + TL P +P + DV A +
Sbjct: 189 AYREPFLAA---------GEARRPTLSWPRQIPIAGTPADVVAIARDYA----------- 228
Query: 231 RCWDLNWELMAPWTGVQIKVPVKYIVGDQDLVYNNKGTKEYIHNGGFKKYVPYLQDVVVM 290
W +P +P +I + + + F + P ++ V
Sbjct: 229 -----GWLSESP-------IPKLFINAEPGALTTGRMRD-------FCRTWPNQTEITV- 268
Query: 291 EGVAHFINQEKAEEVGAHIYEFIKKF 316
AHFI ++ +E+GA I F+++
Sbjct: 269 -AGAHFIQEDSPDEIGAAIAAFVRRL 293
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 4/128 (3%)
Query: 2 EKIEHTTVATNGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRG 61
E E V + ++ G+GPA+L +HGFP+ + W L++ Y + DLRG
Sbjct: 3 EGFERRLVDVGDVTINCVVGGSGPALLLLHGFPQNLHMWARVAPLLANE-YTVVCADLRG 61
Query: 62 YGDTDAP---PSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRV 118
YG + P P +Y+ + LVGH G L PD V
Sbjct: 62 YGGSSKPVGAPDHANYSFRAMASDQRELMRTLGFERFHLVGHARGGRTGHRMALDHPDSV 121
Query: 119 KALVNMSV 126
+L + +
Sbjct: 122 LSLAVLDI 129
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 3/118 (2%)
Query: 12 NGINMHVASIGTGPA---VLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAP 68
G+ MH G A L +HG P + +R L ++ G R +APDL G+G +D P
Sbjct: 31 EGLRMHYVDEGPRDAEHTFLCLHGEPSWSFLYRKMLPVFTAAGGRVVAPDLFGFGRSDKP 90
Query: 69 PSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 126
YT +V LV DWG ++ + RP V L+ M+
Sbjct: 91 TDDAVYTFGFHRRSLLAFLDALQLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNT 148
>pdb|1G5F|A Chain A, Structure Of Linb Complexed With 1,2-Dichloroethane
pdb|1G4H|A Chain A, Linb Complexed With Butan-1-Ol
pdb|1G42|A Chain A, Structure Of 1,3,4,6-Tetrachloro-1,4-Cyclohexadiene
Hydrolase (Linb) From Sphingomonas Paucimobilis
Complexed With 1,2-Dichloropropane
Length = 296
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 53/125 (42%), Gaps = 4/125 (3%)
Query: 5 EHTTVATNGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGD 64
E + G M GTG +LF HG P Y WRN + + + G R IA DL G GD
Sbjct: 10 EKKFIEIKGRRMAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGMGD 68
Query: 65 TDA--PPSVTSYT-ALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKAL 121
+D P Y A H +V LV HDWG+ + + + +RV+ +
Sbjct: 69 SDKLDPSGPERYAYAEHRDYLDALWEALDLGDRVVLVVHDWGSALGFDWARRHRERVQGI 128
Query: 122 VNMSV 126
M
Sbjct: 129 AYMEA 133
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 44/117 (37%), Gaps = 3/117 (2%)
Query: 13 GINMHVASIGTGPA---VLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPP 69
G+ H G A L +HG P Y +R + + G R IAPD G+G +D P
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 70 SVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 126
YT + LV DWG + + P R K L+ M+
Sbjct: 93 DEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNA 149
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 44/117 (37%), Gaps = 3/117 (2%)
Query: 13 GINMHVASIGTGPA---VLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPP 69
G+ H G A L +HG P Y +R + + G R IAPD G+G +D P
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 70 SVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 126
YT + LV DWG + + P R K L+ M+
Sbjct: 93 DEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNA 149
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 44/117 (37%), Gaps = 3/117 (2%)
Query: 13 GINMHVASIGTGPA---VLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPP 69
G+ H G A L +HG P Y +R + + G R IAPD G+G +D P
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 70 SVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 126
YT + LV DWG + + P R K L+ M+
Sbjct: 93 DEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNA 149
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 44/117 (37%), Gaps = 3/117 (2%)
Query: 13 GINMHVASIGTGPA---VLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPP 69
G+ H G A L +HG P Y +R + + G R IAPD G+G +D P
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 70 SVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 126
YT + LV DWG + + P R K L+ M+
Sbjct: 93 DEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNA 149
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 44/117 (37%), Gaps = 3/117 (2%)
Query: 13 GINMHVASIGTGPA---VLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPP 69
G+ H G A L +HG P Y +R + + G R IAPD G+G +D P
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 70 SVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 126
YT + LV DWG + + P R K L+ M+
Sbjct: 93 DEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNA 149
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 7 TTVAT-NGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDT 65
TT T +G ++ G+G ++F HG+P SW +Q+++L+++GYR IA D RG+G +
Sbjct: 1 TTFTTRDGTQIYYKDWGSGQPIVFSHGWPLNADSWESQMIFLAAQGYRVIAHDRRGHGRS 60
Query: 66 DAP 68
P
Sbjct: 61 SQP 63
>pdb|3R41|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
pdb|3R41|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
Length = 306
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 22 GTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSV---TSYTALH 78
G GP +L +HGFP+ W L+ R ++ I DL GYG +D P S T YT
Sbjct: 31 GDGPPLLLLHGFPQTHVMWHRVAPKLAER-FKVIVADLPGYGWSDMPESDEQHTPYTKRA 89
Query: 79 XXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 126
L GHD GA +++ L P R+ L + +
Sbjct: 90 MAKQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAVLDI 137
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 60/150 (40%), Gaps = 15/150 (10%)
Query: 7 TTVATNGINMHVASIG--TGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGD 64
T ++G N+ G G V+F HG+P W NQ+L+ S GYR IA D RG+G
Sbjct: 2 TVTTSDGTNIFYKDWGPRDGLPVVFHHGWPLSADDWDNQMLFFLSHGYRVIAHDRRGHGR 61
Query: 65 TDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHD-WGALIAWYFCLFRPDRVKALVN 123
+D P T + +GH G +A Y P RV V
Sbjct: 62 SDQPS--TGHDMDTYAADVAALTEALDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVL 119
Query: 124 MSVPFPP------RNPAVRPL---NNFRAV 144
+S PP NP PL + FRA
Sbjct: 120 VSA-VPPVMVKSDTNPDGLPLEVFDEFRAA 148
>pdb|3R3U|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3Z|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
Length = 306
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 22 GTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSV---TSYTALH 78
G GP +L +HGFP+ W L+ R ++ I DL GYG +D P S T YT
Sbjct: 31 GDGPPLLLLHGFPQTHVMWHRVAPKLAER-FKVIVADLPGYGWSDMPESDEQHTPYTKRA 89
Query: 79 XXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 126
L GHD GA +++ L P R+ L + +
Sbjct: 90 MAKQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAVLDI 137
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 11 TNGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPS 70
+ I+++ GTG V+ IHGFP +SW Q L GYR I D RG+G + P +
Sbjct: 11 STSIDLYYEDHGTGVPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTT 70
Query: 71 VTSY 74
Y
Sbjct: 71 GYDY 74
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 11 TNGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPS 70
+ I+++ GTG V+ IHGFP +SW Q L GYR I D RG+G + P +
Sbjct: 10 STSIDLYYEDHGTGQPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTT 69
Query: 71 VTSY 74
Y
Sbjct: 70 GYDY 73
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 11 TNGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPS 70
+ I+++ GTG V+ IHGFP +SW Q L GYR I D RG+G + P +
Sbjct: 10 STSIDLYYEDHGTGQPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTT 69
Query: 71 VTSY 74
Y
Sbjct: 70 GYDY 73
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 43/117 (36%), Gaps = 3/117 (2%)
Query: 13 GINMHVASIGTGPA---VLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPP 69
G+ H G A L +HG P Y +R + + G R IAPD G+G +D P
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 70 SVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 126
YT + LV WG + + P R K L+ M+
Sbjct: 93 DEEDYTFEFHRNFLLALIERLDLRNITLVVQXWGGFLGLTLPMADPSRFKRLIIMNA 149
>pdb|3R3V|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3V|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3W|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3W|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3X|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R3X|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R40|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
pdb|3R40|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
Length = 306
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 22 GTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSV---TSYTALH 78
G GP +L +HGFP+ W L+ R ++ I DL GYG +D P S T YT
Sbjct: 31 GDGPPLLLLHGFPQTHVMWHRVAPKLAER-FKVIVADLPGYGWSDMPESDEQHTPYTKRA 89
Query: 79 XXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 126
L GH+ GA +++ L P R+ L + +
Sbjct: 90 MAKQLIEAMEQLGHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDI 137
>pdb|3R3Y|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
pdb|3R3Y|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
Length = 306
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 4/108 (3%)
Query: 22 GTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSV---TSYTALH 78
G GP +L +HGFP+ W L+ R ++ I DL GYG +D P S T YT
Sbjct: 31 GDGPPLLLLHGFPQTHVMWHRVAPKLAER-FKVIVADLPGYGWSDMPESDEQHTPYTKRA 89
Query: 79 XXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 126
L GH GA +++ L P R+ L + +
Sbjct: 90 MAKQLIEAMEQLGHVHFALAGHXRGARVSYRLALDSPGRLSKLAVLDI 137
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%)
Query: 11 TNGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPS 70
+ I+++ G G V+ IHGFP +SW Q L GYR I D RG+G + P +
Sbjct: 10 STSIDLYYEDHGAGQPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTT 69
Query: 71 VTSY 74
Y
Sbjct: 70 GYDY 73
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 3/110 (2%)
Query: 14 INMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTS 73
I ++ GTG V+ IHG+P SW Q+ L GYR I D RG+G + P
Sbjct: 17 IEIYYEDHGTGKPVVLIHGWPLSGRSWEYQVPALVEAGYRVITYDRRGFGKSSQPWEGYE 76
Query: 74 YTALHXXXXXXXXXXXXXXHQVFLVGHD-WGALIAWYFCLFRPDRVKALV 122
Y V LVG G +A Y + DR++ +V
Sbjct: 77 YDTF--TSDLHQLLEQLELQNVTLVGFSXGGGEVARYISTYGTDRIEKVV 124
>pdb|1A8Q|A Chain A, Bromoperoxidase A1
Length = 274
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 12 NGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYG 63
+G+ + G G V+FIHG+P +W++QL + GYR IA D RG+G
Sbjct: 7 DGVEIFYKDWGQGRPVVFIHGWPLNGDAWQDQLKAVVDAGYRGIAHDRRGHG 58
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 5/117 (4%)
Query: 14 INMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTS 73
I ++V G+GP LF HG + + LS R + IA D RG+G +D P T
Sbjct: 58 ITLNVREKGSGPLXLFFHGITSNSAVFEPLXIRLSDR-FTTIAVDQRGHGLSDKPE--TG 114
Query: 74 YTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPP 130
Y A LVGH GA + PD V+++V ++ F P
Sbjct: 115 YEANDYADDIAGLIRTLARGHAILVGHSLGARNSVTAAAKYPDLVRSVV--AIDFTP 169
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In
Complex With 3a,4,7,7a-Tetrahydro-Benzo [1,3]
Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In
Complex With 3a,4,7,7a-Tetrahydro-Benzo [1,3]
Dioxol-2-One
Length = 279
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 14 INMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDT 65
I ++ G+G V+ IHG+P +SW Q L ++GYR I D RG+G +
Sbjct: 13 IELYYEDQGSGQPVVLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGS 64
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 8 TVATNGINMHVASIGTGPAVLFIHGFP---ELWYSWRNQLLYLSSRGYRAIAPDLRGYGD 64
++ G+ + +G G V+ IHG + +WR + LS + YR IAPD+ G+G
Sbjct: 9 SILAAGVLTNYHDVGEGQPVILIHGSGPGVSAYANWRLTIPALS-KFYRVIAPDMVGFGF 67
Query: 65 TDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNM 124
TD P + +Y+ + +VG+ +G +A L +RV +V M
Sbjct: 68 TDRPENY-NYSKDSWVDHIIGIMDALEIEKAHIVGNSFGGGLAIATALRYSERVDRMVLM 126
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 8 TVATNGINMHVASIGTGPAVLFIHGFP---ELWYSWRNQLLYLSSRGYRAIAPDLRGYGD 64
++ G+ + +G G V+ IHG + +WR + LS + YR IAPD+ G+G
Sbjct: 9 SILAAGVLTNYHDVGEGQPVILIHGSGPGVSAYANWRLTIPALS-KFYRVIAPDMVGFGF 67
Query: 65 TDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNM 124
TD P + +Y+ + +VG+ +G +A L +RV +V M
Sbjct: 68 TDRPENY-NYSKDSWVDHIIGIMDALEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLM 126
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 25 PAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYG 63
P + F HG+P W QLL+ + GYR +A D RG+G
Sbjct: 23 PVIHFHHGWPLSADDWDAQLLFFLAHGYRVVAHDRRGHG 61
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Query: 14 INMHVASIGTGPAVLFIHGFPELWYSWR-NQLLYLSSRGYRAIAPDLRGYGDTDAPPSVT 72
IN+ GTG V+FI G +W +Q+ + GYR I D RG G T+ T
Sbjct: 33 INLAYDDNGTGDPVVFIAGRGGAGRTWHPHQVPAFLAAGYRCITFDNRGIGATENAEGFT 92
Query: 73 SYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 126
+ T + +VG GA IA + P+ V + V M+
Sbjct: 93 TQTMVADTAALIETLDIAPAR---VVGVSMGAFIAQELMVVAPELVSSAVLMAT 143
>pdb|4ETW|A Chain A, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|C Chain C, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 264
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 98 VGHDWGALIAWYFCLFRPDRVKALVNMSVP--FPPRN--PAVRP--LNNFRAVYGDDYY- 150
+G G L+A L P+RV+ALV ++ F R+ P ++P L F+ DD+
Sbjct: 79 LGWALGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQR 138
Query: 151 -ICRFQEPGEIEEEFAQIDTARLMKKFLCLRIPK 183
+ RF + E A+ D L K L L +P+
Sbjct: 139 TVERFLALQTMGTETARQDARALKKTVLALPMPE 172
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 27 VLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYG 63
+ F HG+P W QLL+ ++G+R +A D RG+G
Sbjct: 29 IHFHHGWPLSSDDWDAQLLFFVNKGFRVVAHDRRGHG 65
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 41/113 (36%), Gaps = 4/113 (3%)
Query: 15 NMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLS---SRGYRAIAPDLRGYGDTDAPPSV 71
N+H G G V+ +HG W N + GYR I D G+ +DA +
Sbjct: 24 NIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAV-VM 82
Query: 72 TSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNM 124
L + LVG+ G A F L PDR+ L+ M
Sbjct: 83 DEQRGLVNARAVKGLMDALDIDRAHLVGNSMGGATALNFALEYPDRIGKLILM 135
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 41/113 (36%), Gaps = 4/113 (3%)
Query: 15 NMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLS---SRGYRAIAPDLRGYGDTDAPPSV 71
N+H G G V+ +HG W N + GYR I D G+ +DA +
Sbjct: 24 NIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAV-VM 82
Query: 72 TSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNM 124
L + LVG+ G A F L PDR+ L+ M
Sbjct: 83 DEQRGLVNARAVKGLMDALDIDRAHLVGNSMGGATALNFALEYPDRIGKLILM 135
>pdb|1QTR|A Chain A, Crystal Structure Analysis Of The Prolyl Aminopeptidase
From Serratia Marcescens
pdb|1WM1|A Chain A, Crystal Structure Of Prolyl Aminopeptidase, Complex With
Pro-tboda
pdb|1X2B|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Sar-Tboda
pdb|1X2E|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Ala-Tboda
Length = 317
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
Query: 23 TGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXX 82
G +FIHG P S ++ L+ R Y+ + D RG G + S+ + T H
Sbjct: 36 NGKPAVFIHGGPGGGISPHHRQLFDPER-YKVLLFDQRGCGRSRPHASLDNNTTWHLVAD 94
Query: 83 XXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALV 122
Q + G WG+ +A + P+RV +V
Sbjct: 95 IERLREMAGVEQWLVFGGSWGSTLALAYAQTHPERVSEMV 134
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 4/114 (3%)
Query: 15 NMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLS---SRGYRAIAPDLRGYGDTDAPPSV 71
N+H G G V+ +HG W N + GYR I D G+ +DA +
Sbjct: 21 NIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAV-VM 79
Query: 72 TSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMS 125
L + LVG+ G A F L PDR+ L+ M
Sbjct: 80 DEQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMG 133
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 41/113 (36%), Gaps = 4/113 (3%)
Query: 15 NMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLS---SRGYRAIAPDLRGYGDTDAPPSV 71
N+H G G V+ +HG W N + GYR I D G+ +DA +
Sbjct: 24 NIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAV-VM 82
Query: 72 TSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNM 124
L + LVG+ G A F L PDR+ L+ M
Sbjct: 83 DEQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILM 135
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 41/113 (36%), Gaps = 4/113 (3%)
Query: 15 NMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLS---SRGYRAIAPDLRGYGDTDAPPSV 71
N+H G G V+ +HG W N + GYR I D G+ +DA +
Sbjct: 24 NIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAV-VM 82
Query: 72 TSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNM 124
L + LVG+ G A F L PDR+ L+ M
Sbjct: 83 DEQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILM 135
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 41/113 (36%), Gaps = 4/113 (3%)
Query: 15 NMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLS---SRGYRAIAPDLRGYGDTDAPPSV 71
N+H G G V+ +HG W N + GYR I D G+ +DA +
Sbjct: 24 NIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAV-VM 82
Query: 72 TSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNM 124
L + LVG+ G A F L PDR+ L+ M
Sbjct: 83 DEQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILM 135
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 1/101 (0%)
Query: 22 GTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXX 81
G +L HG +W + L+ GYR IA D G+ + + P+ Y+
Sbjct: 44 ANGRTILLXHGKNFCAGTWERTIDVLADAGYRVIAVDQVGFCKS-SKPAHYQYSFQQLAA 102
Query: 82 XXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALV 122
+ ++GH G +A + L P +V+ LV
Sbjct: 103 NTHALLERLGVARASVIGHSXGGXLATRYALLYPRQVERLV 143
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 45/119 (37%), Gaps = 5/119 (4%)
Query: 9 VATNGINMHVASIGTGPAVLFIHGFPELWY---SWRNQLLYLSSRGYRAIAPDLRGYGDT 65
V G+ G G V+ IHG +WRN + L+ R YR IA D+ G+G T
Sbjct: 21 VNAGGVETRYLEAGKGQPVILIHGGGAGAESEGNWRNVIPILA-RHYRVIAMDMLGFGKT 79
Query: 66 DAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNM 124
A P + +V +VG+ G + + V ALV M
Sbjct: 80 -AKPDIEYTQDRRIRHLHDFIKAMNFDGKVSIVGNSMGGATGLGVSVLHSELVNALVLM 137
>pdb|1M33|A Chain A, Crystal Structure Of Bioh At 1.7 A
Length = 258
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 98 VGHDWGALIAWYFCLFRPDRVKALVNMSVP--FPPRN--PAVRP--LNNFRAVYGDDYY- 150
+G G L+A L P+RV+ALV ++ F R+ P ++P L F+ DD
Sbjct: 79 LGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQR 138
Query: 151 -ICRFQEPGEIEEEFAQIDTARLMKKFLCLRIPK 183
+ RF E A+ D L K L L P+
Sbjct: 139 TVERFLALQTXGTETARQDARALKKTVLALPXPE 172
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 16/111 (14%)
Query: 22 GTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYG------DTDAPPSVTSYT 75
G+ P V+F+HG + ++W ++ L G A+A DL G+G D + P + S T
Sbjct: 79 GSAPRVIFLHGGGQNAHTWDTVIVGL---GEPALAVDLPGHGHSAWREDGNYSPQLNSET 135
Query: 76 ALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 126
F+VG G L A PD V LV + V
Sbjct: 136 -------LAPVLRELAPGAEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDV 179
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 12/143 (8%)
Query: 10 ATNGINMHVASIGTG-PAVLFIHGF---PELWYSWRNQLLYLSSRGYRAIAPDLRGYGDT 65
A + +H G G V+ +HG W ++ + L GYR I D G+G +
Sbjct: 21 AGKTLRIHFNDCGQGDETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPGWGKS 80
Query: 66 DAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALV--- 122
D+ + S + L+ ++ L+G+ G + F L P+RV LV
Sbjct: 81 DSVVNSGSRSDLNARILKSVVDQLDIA-KIHLLGNSMGGHSSVAFTLKWPERVGKLVLMG 139
Query: 123 ----NMSVPFPPRNPAVRPLNNF 141
MS+ P ++ LN
Sbjct: 140 GGTGGMSLFTPMPTEGIKRLNQL 162
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 3/114 (2%)
Query: 14 INMHVASIGTGPAVLFIHGFPELWYSWRN--QLLYLSSRGYRAIAPDLRGYGDTDAPPSV 71
++ H A +G V+ +HG SW N + + + +R + +A D GYG +D
Sbjct: 46 LHYHEAGVGNDQTVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEH 105
Query: 72 TSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMS 125
+ + +V LVG+ G A F L P R LV M
Sbjct: 106 GQFNR-YAAMALKGLFDQLGLGRVPLVGNSLGGGTAVRFALDYPARAGRLVLMG 158
>pdb|3FSG|D Chain D, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
Query: 15 NMHVASIGTGPAVLFIHGFPELWYSWRNQLLY---LSSRG-YRAIAPDLRGYGDTDAPPS 70
N+ SIG+G ++F+HG L ++ L+ LS+ G Y+ I DL G G++D
Sbjct: 12 NISYFSIGSGTPIIFLHG---LSLDKQSTCLFFEPLSNVGQYQRIYLDLPGXGNSDPISP 68
Query: 71 VTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRV 118
TS L + L GH +G +A D+
Sbjct: 69 STSDNVLE--TLIEAIEEIIGARRFILYGHSYGGYLAQAIAFHLKDQT 114
>pdb|3FSG|A Chain A, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|B Chain B, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|C Chain C, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
Query: 15 NMHVASIGTGPAVLFIHGFPELWYSWRNQLLY---LSSRG-YRAIAPDLRGYGDTDAPPS 70
N+ SIG+G ++F+HG L ++ L+ LS+ G Y+ I DL G G++D
Sbjct: 12 NISYFSIGSGTPIIFLHG---LSLDKQSTXLFFEPLSNVGQYQRIYLDLPGXGNSDPISP 68
Query: 71 VTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRV 118
TS L + L GH +G +A D+
Sbjct: 69 STSDNVLE--TLIEAIEEIIGARRFILYGHSYGGYLAQAIAFHLKDQT 114
>pdb|1YS1|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (R)-2-Methyl-3-Phenylpropyl Ester
pdb|1YS2|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (s) 2-methyl-3-phenylpropyl Ester
Length = 320
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 35/110 (31%), Gaps = 16/110 (14%)
Query: 27 VLFIHGFP---------ELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTAL 77
++ +HG E WY + L RG +L G+ D P
Sbjct: 11 IILVHGLTGTDKYAGVLEYWYGIQEDL---QQRGATVYVANLSGFQSDDGPNG----RGE 63
Query: 78 HXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVP 127
+V LVGH G L + Y PD V ++ + P
Sbjct: 64 QLLAYVKTVLAATGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTP 113
>pdb|1OIL|A Chain A, Structure Of Lipase
pdb|1OIL|B Chain B, Structure Of Lipase
pdb|4LIP|D Chain D, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|4LIP|E Chain E, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|1HQD|A Chain A, Pseudomonas Cepacia Lipase Complexed With Transition State
Analogue Of 1-Phenoxy-2-Acetoxy Butane
pdb|2LIP|A Chain A, Pseudomonas Lipase Open Conformation
pdb|3LIP|A Chain A, Open Conformation Of Pseudomonas Cepacia Lipase
pdb|5LIP|A Chain A, Pseudomonas Lipase Complexed With Rc-(Rp, Sp)-1,2-
Dioctylcarbamoylglycero-3-O-Octylphosphonate
pdb|2NW6|A Chain A, Burkholderia Cepacia Lipase Complexed With S-Inhibitor
Length = 320
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 35/110 (31%), Gaps = 16/110 (14%)
Query: 27 VLFIHGFP---------ELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTAL 77
++ +HG E WY + L RG +L G+ D P
Sbjct: 11 IILVHGLTGTDKYAGVLEYWYGIQEDL---QQRGATVYVANLSGFQSDDGPNG----RGE 63
Query: 78 HXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVP 127
+V LVGH G L + Y PD V ++ + P
Sbjct: 64 QLLAYVKTVLAATGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTP 113
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 3/114 (2%)
Query: 14 INMHVASIGTGPAVLFIHGFPELWYSWRN--QLLYLSSRGYRAIAPDLRGYGDTDAPPSV 71
++ H A +G V+ +HG SW N + + + +R + +A D GYG +D
Sbjct: 26 LHYHEAGVGNDQTVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEH 85
Query: 72 TSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMS 125
+ + +V LVG+ G A F L P R LV M
Sbjct: 86 GQFNR-YAAMALKGLFDQLGLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMG 138
>pdb|3FCY|A Chain A, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
pdb|3FCY|B Chain B, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
pdb|3FCY|C Chain C, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
Length = 346
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 22 GTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYG 63
G PA++ HG+ W ++L Y+++ G+ +A D+RG G
Sbjct: 106 GKHPALIRFHGYSSNSGDWNDKLNYVAA-GFTVVAMDVRGQG 146
>pdb|1IMJ|A Chain A, Crystal Structure Of The Human Ccg1/tafii250-interacting
Factor B (cib)
Length = 210
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 26 AVLFIHGFPELWYSWRN--QLLYLSSRGYRAIAPDLRGYGDT 65
+VL +HG +W+N L L+ GYRA+A DL G G +
Sbjct: 34 SVLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPGLGHS 75
>pdb|3OM8|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
pdb|3OM8|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
Length = 266
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 38 YSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFL 97
+ W QL L+ R +R + D RG+G + PP YT +
Sbjct: 41 HXWDAQLPALT-RHFRVLRYDARGHGASSVPPG--PYTLARLGEDVLELLDALEVRRAHF 97
Query: 98 VGHDWGALIAWYFCLFRPDRVKALV 122
+G G ++ + L P R++ LV
Sbjct: 98 LGLSLGGIVGQWLALHAPQRIERLV 122
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 20 SIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYG-DTDAPPSVTSYT 75
S G G +L IHG + QL + +R IAPDL G+G TDA SY+
Sbjct: 20 SEGEGAPLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYS 76
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 20 SIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYG-DTDAPPSVTSYT 75
S G G +L IHG + QL + +R IAPDL G+G TDA SY+
Sbjct: 20 SEGEGAPLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYS 76
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 20 SIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYG-DTDAPPSVTSYT 75
S G G +L IHG + QL + +R IAPDL G+G TDA SY+
Sbjct: 20 SEGEGAPLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYS 76
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 4 IEHTTVATNGINMHVASIGTGP-AVLFIHG-FPELWYSWRNQLLYLSSRGYRAIAPDLRG 61
+ VA NG+ +H G G AVL + G + QL L+ + + +A D RG
Sbjct: 2 VTSAKVAVNGVQLHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRG 61
Query: 62 YGDTDAP 68
YG + P
Sbjct: 62 YGHSRPP 68
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 4 IEHTTVATNGINMHVASIGTGP-AVLFIHG-FPELWYSWRNQLLYLSSRGYRAIAPDLRG 61
+ VA NG+ +H G G AVL + G + QL L+ + + +A D RG
Sbjct: 2 VTSAKVAVNGVQLHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRG 61
Query: 62 YGDTDAP 68
YG + P
Sbjct: 62 YGHSRPP 68
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed
With A Product Analogue
Length = 254
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 4 IEHTTVATNGINMHVASIGTGP-AVLFIHG-FPELWYSWRNQLLYLSSRGYRAIAPDLRG 61
+ VA NG+ +H G G AVL + G + QL L+ + + +A D RG
Sbjct: 2 VTSAKVAVNGVQLHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRG 61
Query: 62 YGDTDAP 68
YG + P
Sbjct: 62 YGHSRPP 68
>pdb|1TQH|A Chain A, Covalent Reaction Intermediate Revealed In Crystal
Structure Of The Geobacillus Stearothermophilus
Carboxylesterase Est30
Length = 247
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 26 AVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTA 76
AVL +HGF R +L S+GY AP +G+G PP +T
Sbjct: 18 AVLLLHGFTGNSADVRMLGRFLESKGYTCHAPIYKGHG---VPPEELVHTG 65
>pdb|1R1D|A Chain A, Structure Of A Carboxylesterase From Bacillus
Stearothermophilus
pdb|1R1D|B Chain B, Structure Of A Carboxylesterase From Bacillus
Stearothermophilus
Length = 247
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 26 AVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTA 76
AVL +HGF R +L S+GY AP +G+G PP +T
Sbjct: 18 AVLLLHGFTGNSADVRXLGRFLESKGYTCHAPIYKGHG---VPPEELVHTG 65
>pdb|3RM3|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257
pdb|3RLI|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257 In Complex With Pmsf
Length = 270
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 2/108 (1%)
Query: 24 GP-AVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXX 82
GP VL +HGF +S R + GY P L+G+G T++
Sbjct: 39 GPVGVLLVHGFTGTPHSMRPLAEAYAKAGYTVCLPRLKGHGTHYEDMERTTFHDWVASVE 98
Query: 83 XXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKAL-VNMSVPFP 129
+F+ G G + Y PD + +N +V P
Sbjct: 99 EGYGWLKQRCQTIFVTGLSMGGTLTLYLAEHHPDICGIVPINAAVDIP 146
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 57/147 (38%), Gaps = 12/147 (8%)
Query: 8 TVATNGINMHVASIGTGPAVLFIHGF---PELWYSWRNQLLYLSSRGYRAIAPDLRGYGD 64
T+A++ + VA PAV+ +HG +WR + L+ + +APDL G+G
Sbjct: 16 TLASHAL---VAGDPQSPAVVLLHGAGPGAHAASNWRPIIPDLAEN-FFVVAPDLIGFGQ 71
Query: 65 TDAPPS----VTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKA 120
++ P + + S+ + + +VG+ G + + P+R
Sbjct: 72 SEYPETYPGHIMSWVGMR-VEQILGLMNHFGIEKSHIVGNSMGGAVTLQLVVEAPERFDK 130
Query: 121 LVNMSVPFPPRNPAVRPLNNFRAVYGD 147
+ M P N L A Y D
Sbjct: 131 VALMGSVGAPMNARPPELARLLAFYAD 157
>pdb|3CE6|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
Length = 494
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 250 VPVKYIVGDQDLVYNNKGTKEYIHNGGFKKYVPYLQDVVVMEGVAHFINQ 299
V V+ +GD D+V G K+ I +++ ++D ++ + HF N+
Sbjct: 321 VTVEEAIGDADIVVTATGNKDII----MLEHIKAMKDHAILGNIGHFDNE 366
>pdb|3DHY|A Chain A, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|B Chain B, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|C Chain C, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|D Chain D, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|2ZIZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZJ0|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
Length = 495
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 250 VPVKYIVGDQDLVYNNKGTKEYIHNGGFKKYVPYLQDVVVMEGVAHFINQ 299
V V+ +GD D+V G K+ I +++ ++D ++ + HF N+
Sbjct: 322 VTVEEAIGDADIVVTATGNKDII----MLEHIKAMKDHAILGNIGHFDNE 367
>pdb|4FBL|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|C Chain C, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|D Chain D, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 281
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 47/131 (35%), Gaps = 14/131 (10%)
Query: 20 SIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHX 79
S+G+ VL HGF S R + GY P L G+G T A + ++ +
Sbjct: 47 SVGSRIGVLVSHGFTGSPQSMRFLAEGFARAGYTVATPRLTGHGTTPAEMAASTASDWTA 106
Query: 80 XXXXXXXXXXXXXHQVFLVGHDW-GALIAWYFCLFRPDR------VKALVNMSVP----- 127
+F+ G GAL W F P+R + A + M P
Sbjct: 107 DIVAAMRWLEERCDVLFMTGLSMGGALTVWAAGQF-PERFAGIMPINAALRMESPDLAAL 165
Query: 128 -FPPRNPAVRP 137
F P PA P
Sbjct: 166 AFNPDAPAELP 176
>pdb|4FBM|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBM|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 293
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 47/131 (35%), Gaps = 14/131 (10%)
Query: 20 SIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHX 79
S+G+ VL HGF S R + GY P L G+G T A + ++ +
Sbjct: 45 SVGSRIGVLVSHGFTGSPQSMRFLAEGFARAGYTVATPRLTGHGTTPAEMAASTASDWTA 104
Query: 80 XXXXXXXXXXXXXHQVFLVGHDW-GALIAWYFCLFRPDR------VKALVNMSVP----- 127
+F+ G GAL W F P+R + A + M P
Sbjct: 105 DIVAAMRWLEERCDVLFMTGLSMGGALTVWAAGQF-PERFAGIMPINAALRMESPDLAAL 163
Query: 128 -FPPRNPAVRP 137
F P PA P
Sbjct: 164 AFNPDAPAELP 174
>pdb|3V48|A Chain A, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
pdb|3V48|B Chain B, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
Length = 268
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 4/103 (3%)
Query: 24 GPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTS-YTALHXXXX 82
P V+ I G W QL L Y+ + D RG G+ P ++ Y+
Sbjct: 15 APVVVLISGLGGSGSYWLPQLAVLEQE-YQVVCYDQRGTGNN--PDTLAEDYSIAQXAAE 71
Query: 83 XXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMS 125
+VGH GAL+ L P V L++++
Sbjct: 72 LHQALVAAGIEHYAVVGHALGALVGXQLALDYPASVTVLISVN 114
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 257 GDQDLVYNNKGTKEYIHN---GGFKKYVPYLQDVVVMEGVAHFINQEKAEEVGAHI 309
GD+DL+ NNKG + I N GG K + D V + + + + +EE ++
Sbjct: 380 GDKDLICNNKGVLDTIDNLKWGGIKGFS---DDAVSFDWIHKSKSTDDSEEFSGYV 432
>pdb|1SR9|A Chain A, Crystal Structure Of Leua From Mycobacterium Tuberculosis
pdb|1SR9|B Chain B, Crystal Structure Of Leua From Mycobacterium Tuberculosis
Length = 644
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 8 TVATNGINMHVASIGTGPAVLFIHGFPELWY 38
TV NG+ ++ G GP F+H ++ +
Sbjct: 517 TVKINGVETEISGSGNGPLAAFVHALADVGF 547
>pdb|3FIG|A Chain A, Crystal Structure Of Leucine-bound Leua From Mycobacterium
Tuberculosis
pdb|3FIG|B Chain B, Crystal Structure Of Leucine-bound Leua From Mycobacterium
Tuberculosis
Length = 646
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 8 TVATNGINMHVASIGTGPAVLFIHGFPELWY 38
TV NG+ ++ G GP F+H ++ +
Sbjct: 519 TVKINGVETEISGSGNGPLAAFVHALADVGF 549
>pdb|3HPS|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Ketoisocaproate (Kic)
pdb|3HPS|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Ketoisocaproate (Kic)
pdb|3HPZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Bromopyruvate
pdb|3HPZ|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Bromopyruvate
pdb|3HQ1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Citrate And Mn2+
pdb|3HQ1|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Citrate And Mn2+
Length = 644
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 8 TVATNGINMHVASIGTGPAVLFIHGFPELWY 38
TV NG+ ++ G GP F+H ++ +
Sbjct: 517 TVKINGVETEISGSGNGPLAAFVHALADVGF 547
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,512,712
Number of Sequences: 62578
Number of extensions: 467586
Number of successful extensions: 1019
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 821
Number of HSP's gapped (non-prelim): 140
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)