BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021159
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GJZ|A Chain A, Jmjd5 In Complex With 2-Oxoglutarate
Length = 235
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 110/286 (38%), Gaps = 62/286 (21%)
Query: 20 STIERLESPPTPLQFLRD-YVSQNKPCIIKNVSLHHQWPAFSLWP--HPSYLSKTXXXXX 76
ST+ RL P LQ R+ ++ +P I+K V+ H WP W + ++
Sbjct: 1 STVPRLHRPS--LQHFREQFLVPGRPVILKGVADH--WPCMQKWSLEYIQEIAGCRTVPV 56
Query: 77 XXXXXXXXNGRADSLVTLTHPRSGEISQCFASAHVERLPFDEALQLVSNSKNGDVVAYLQ 136
+ +L+T+ F S ++ P D + ++ + D + L+
Sbjct: 57 EVGSRYTDEEWSQTLMTVNE---------FISKYIVNEPRD--VGYLAQHQLFDQIPELK 105
Query: 137 QQNDCFRDEYSVLGSDCDEHIAWATEALGCYPEAVNLWIGNQLSETSFHKDHYENLYTVV 196
Q D +Y LG +E I +N W G Q + + H+D +N V
Sbjct: 106 Q--DISIPDYCSLGDGEEEEIT------------INAWFGPQGTISPLHQDPQQNFLVQV 151
Query: 197 SGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWCSVNPYPSP 256
G+K+ L P + +Y H + S+V DVE NP
Sbjct: 152 MGRKYIRLYSPQESGALYPHDTHLLHNT-SQV-DVE------------------NP---- 187
Query: 257 ETRESEMAKFPLYFNGPKPFECTVNAGEILYLLIWFRKAVRNSEVN 302
++ KFP + P C ++ GEIL++ + + VR +++
Sbjct: 188 -----DLEKFPKFAKAPF-LSCILSPGEILFIPVKYWHYVRALDLS 227
>pdb|3AL5|A Chain A, Crystal Structure Of Human Tyw5
pdb|3AL5|B Chain B, Crystal Structure Of Human Tyw5
pdb|3AL5|C Chain C, Crystal Structure Of Human Tyw5
pdb|3AL5|D Chain D, Crystal Structure Of Human Tyw5
pdb|3AL6|A Chain A, Crystal Structure Of Human Tyw5
pdb|3AL6|B Chain B, Crystal Structure Of Human Tyw5
pdb|3AL6|C Chain C, Crystal Structure Of Human Tyw5
pdb|3AL6|D Chain D, Crystal Structure Of Human Tyw5
Length = 338
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 35/113 (30%)
Query: 185 HKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRY 244
H D +NL V+G+K +L P D +Y++ + S V +++
Sbjct: 183 HYDVMDNLLIQVTGKKRVVLFSPRDAQYLYLKG------TKSEVLNID------------ 224
Query: 245 VPWCSVNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYL-LIWFRKAV 296
NP ++AK+PL F+ + +EC++ AG++L++ +WF +
Sbjct: 225 ------NP---------DLAKYPL-FSKARRYECSLEAGDVLFIPALWFHNVI 261
>pdb|4AAP|A Chain A, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific
Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine
(Nog)
pdb|4AAP|B Chain B, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific
Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine
(Nog)
Length = 239
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 109/285 (38%), Gaps = 62/285 (21%)
Query: 21 TIERLESPPTPLQFLRD-YVSQNKPCIIKNVSLHHQWPAFSLWP--HPSYLSKTXXXXXX 77
T+ RL P LQ R+ ++ +P I+K V+ H WP W + ++
Sbjct: 6 TVPRLHRPS--LQHFREQFLVPGRPVILKGVADH--WPCMQKWSLEYIQEIAGCRTVPVE 61
Query: 78 XXXXXXXNGRADSLVTLTHPRSGEISQCFASAHVERLPFDEALQLVSNSKNGDVVAYLQQ 137
+ +L+T+ F S ++ P D + ++ + D + L+Q
Sbjct: 62 VGSRYTDEEWSQTLMTVNE---------FISKYIVNEPRD--VGYLAQHQLFDQIPELKQ 110
Query: 138 QNDCFRDEYSVLGSDCDEHIAWATEALGCYPEAVNLWIGNQLSETSFHKDHYENLYTVVS 197
D +Y LG +E I +N W G Q + + H+D +N V
Sbjct: 111 --DISIPDYCSLGDGEEEEIT------------INAWFGPQGTISPLHQDPQQNFLVQVM 156
Query: 198 GQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWCSVNPYPSPE 257
G+K+ L P + +Y H + S+V DVE NP
Sbjct: 157 GRKYIRLYSPQESGALYPHDTHLLHNT-SQV-DVE------------------NP----- 191
Query: 258 TRESEMAKFPLYFNGPKPFECTVNAGEILYLLIWFRKAVRNSEVN 302
++ KFP + P C ++ GEIL++ + + VR +++
Sbjct: 192 ----DLEKFPKFAKAPF-LSCILSPGEILFIPVKYWHYVRALDLS 231
>pdb|4GJY|A Chain A, Jmjd5 In Complex With N-Oxalylglycine
Length = 235
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 109/286 (38%), Gaps = 62/286 (21%)
Query: 20 STIERLESPPTPLQFLRD-YVSQNKPCIIKNVSLHHQWPAFSLWP--HPSYLSKTXXXXX 76
ST+ RL P LQ R+ ++ +P I+K V+ H WP W + ++
Sbjct: 1 STVPRLHRPS--LQHFREQFLVPGRPVILKGVADH--WPCXQKWSLEYIQEIAGCRTVPV 56
Query: 77 XXXXXXXXNGRADSLVTLTHPRSGEISQCFASAHVERLPFDEALQLVSNSKNGDVVAYLQ 136
+ +L T+ F S ++ P D + ++ + D + L+
Sbjct: 57 EVGSRYTDEEWSQTLXTVNE---------FISKYIVNEPRD--VGYLAQHQLFDQIPELK 105
Query: 137 QQNDCFRDEYSVLGSDCDEHIAWATEALGCYPEAVNLWIGNQLSETSFHKDHYENLYTVV 196
Q D +Y LG +E I +N W G Q + + H+D +N V
Sbjct: 106 Q--DISIPDYCSLGDGEEEEIT------------INAWFGPQGTISPLHQDPQQNFLVQV 151
Query: 197 SGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWCSVNPYPSP 256
G+K+ L P + +Y H + S+V DVE NP
Sbjct: 152 XGRKYIRLYSPQESGALYPHDTHLLHNT-SQV-DVE------------------NP---- 187
Query: 257 ETRESEMAKFPLYFNGPKPFECTVNAGEILYLLIWFRKAVRNSEVN 302
++ KFP + P C ++ GEIL++ + + VR +++
Sbjct: 188 -----DLEKFPKFAKAPF-LSCILSPGEILFIPVKYWHYVRALDLS 227
>pdb|3UYJ|A Chain A, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
pdb|3UYJ|B Chain B, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
Length = 248
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 109/285 (38%), Gaps = 62/285 (21%)
Query: 21 TIERLESPPTPLQFLRD-YVSQNKPCIIKNVSLHHQWPAFSLWP--HPSYLSKTXXXXXX 77
T+ RL P LQ R+ ++ +P I+K V+ H WP W + ++
Sbjct: 15 TVPRLHRPS--LQHFREQFLVPGRPVILKGVADH--WPCMQKWSLEYIQEIAGCRTVPVE 70
Query: 78 XXXXXXXNGRADSLVTLTHPRSGEISQCFASAHVERLPFDEALQLVSNSKNGDVVAYLQQ 137
+ +L+T+ F S ++ P D + ++ + D + L+Q
Sbjct: 71 VGSRYTDEEWSQTLMTVNE---------FISKYIVNEPRD--VGYLAQHQLFDQIPELKQ 119
Query: 138 QNDCFRDEYSVLGSDCDEHIAWATEALGCYPEAVNLWIGNQLSETSFHKDHYENLYTVVS 197
D +Y LG +E I +N W G Q + + H+D +N V
Sbjct: 120 --DISIPDYCSLGDGEEEEIT------------INAWFGPQGTISPLHQDPQQNFLVQVM 165
Query: 198 GQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWCSVNPYPSPE 257
G+K+ L P + +Y H + S+V DVE NP
Sbjct: 166 GRKYIRLYSPQESGALYPHDTHLLHNT-SQV-DVE------------------NP----- 200
Query: 258 TRESEMAKFPLYFNGPKPFECTVNAGEILYLLIWFRKAVRNSEVN 302
++ KFP + P C ++ GEIL++ + + VR +++
Sbjct: 201 ----DLEKFPKFAKAPF-LSCILSPGEILFIPVKYWHYVRALDLS 240
>pdb|1IZ3|A Chain A, Dimeric Structure Of Fih (Factor Inhibiting Hif)
Length = 349
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 173 LWIGNQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAH 222
L IG + + T H D +N + + G K +L PP +Y YP H
Sbjct: 187 LLIGXEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLY--PYPVHH 234
>pdb|2XUM|A Chain A, Factor Inhibiting Hif (Fih) Q239h Mutant In Complex With
Zn(Ii), Nog And Asp-Substrate Peptide (20-Mer)
Length = 349
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 173 LWIGNQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAH--YSYSRVN- 229
L IG + + T H D +N + + G K +L PP +Y YP H +S+V+
Sbjct: 187 LLIGMEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLY--PYPVHHPCDRHSQVDF 244
Query: 230 ---DVERF 234
D ERF
Sbjct: 245 DNPDYERF 252
>pdb|1H2K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2L|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2M|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2N|A Chain A, Factor Inhibiting Hif-1 Alpha
pdb|1YCI|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
N-(Carboxycarbonyl)-D- Phenylalanine
pdb|2CGN|A Chain A, Factor Inhibiting Hif-1 Alpha With Succinate
pdb|2CGO|A Chain A, Factor Inhibiting Hif-1 Alpha With Fumarate
pdb|2W0X|A Chain A, Factor Inhibiting Hif-1 Alpha With Pyridine 2,4
Dicarboxylic Acid
pdb|2WA3|A Chain A, Factor Inhibiting Hif-1 Alpha With 2-(3-Hydroxyphenyl)-2-
Oxoacetic Acid
pdb|2WA4|A Chain A, Factor Inhibiting Hif-1 Alpha With N,3-Dihydroxybenzamide
pdb|3P3N|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Notch 1
Fragment Mouse Notch (1930-1949) Peptide
pdb|3P3P|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Notch 1
Fragment Mouse Notch (1997-2016) Peptide
pdb|3OD4|A Chain A, Crystal Structure Of Factor Inhibiting Hif-1 Alpha
Complexed With Inhibitor
pdb|4B7E|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-leu Peptide (20-mer)
pdb|4B7K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-ser Peptide (20-mer)
Length = 349
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 173 LWIGNQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAH 222
L IG + + T H D +N + + G K +L PP +Y YP H
Sbjct: 187 LLIGMEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLY--PYPVHH 234
>pdb|1MZE|A Chain A, Human Factor Inhibiting Hif (Fih1)
pdb|1MZF|A Chain A, Human Factor Inhibiting Hif (Fih1) In Complex With
2-Oxoglutarate
Length = 351
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 173 LWIGNQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAH 222
L IG + + T H D +N + + G K +L PP +Y YP H
Sbjct: 189 LLIGMEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLY--PYPVHH 236
>pdb|3KCX|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Clioquinol
pdb|3KCY|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
8-Hydroxyquino
Length = 335
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 173 LWIGNQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAH 222
L IG + + T H D +N + + G K +L PP +Y YP H
Sbjct: 173 LLIGMEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLY--PYPVHH 220
>pdb|2Y0I|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Tankyrase-2
(Tnks2) Fragment Peptide (21-Mer)
pdb|2YC0|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
R-2-Hydroxyglutarate
pdb|2YDE|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
S-2-Hydroxyglutarate
pdb|4AI8|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Daminozide
Length = 352
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 173 LWIGNQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAH 222
L IG + + T H D +N + + G K +L PP +Y YP H
Sbjct: 190 LLIGMEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLY--PYPVHH 237
>pdb|1SGF|A Chain A, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
pdb|1SGF|X Chain X, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
Length = 240
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 189 YENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVND 230
Y + Y V G+ +FL P+D HR+ + P ++ S +N+
Sbjct: 46 YNDKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNE 87
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 24/101 (23%)
Query: 170 AVNLWIGNQLSETSFHKDHYENLYTVVSGQK---------HF-LLLPPTDVHRMYIRQYP 219
VN +IGN L+E +DHYE +Y + G HF + +H +I +
Sbjct: 20 GVNGFIGNHLTERLLREDHYE-VYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHV 78
Query: 220 ------------AAHYSYSRVNDVERFTLELEEPVRYVPWC 248
A Y+R N + F L+ EE +R + +C
Sbjct: 79 KKCDVVLPLVAIATPIEYTR-NPLRVFELDFEENLRIIRYC 118
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 24/101 (23%)
Query: 170 AVNLWIGNQLSETSFHKDHYENLYTVVSGQK---------HFLLL-PPTDVHRMYIRQYP 219
VN +IGN L+E +DHYE +Y + G HF + +H +I +
Sbjct: 322 GVNGFIGNHLTERLLREDHYE-VYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHV 380
Query: 220 ------------AAHYSYSRVNDVERFTLELEEPVRYVPWC 248
A Y+R N + F L+ EE +R + +C
Sbjct: 381 KKCDVVLPLVAIATPIEYTR-NPLRVFELDFEENLRIIRYC 420
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 24/101 (23%)
Query: 170 AVNLWIGNQLSETSFHKDHYENLYTVVSGQK---------HF-LLLPPTDVHRMYIRQYP 219
VN +IGN L+E +DHYE +Y + G HF + +H +I +
Sbjct: 20 GVNGFIGNHLTERLLREDHYE-VYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHV 78
Query: 220 ------------AAHYSYSRVNDVERFTLELEEPVRYVPWC 248
A Y+R N + F L+ EE +R + +C
Sbjct: 79 KKCDVVLPLVAIATPIEYTR-NPLRVFELDFEENLRIIRYC 118
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 24/101 (23%)
Query: 170 AVNLWIGNQLSETSFHKDHYENLYTVVSGQK---------HF-LLLPPTDVHRMYIRQYP 219
VN +IGN L+E +DHYE +Y + G HF + +H +I +
Sbjct: 7 GVNGFIGNHLTERLLREDHYE-VYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHV 65
Query: 220 ------------AAHYSYSRVNDVERFTLELEEPVRYVPWC 248
A Y+R N + F L+ EE +R + +C
Sbjct: 66 KKCDVVLPLVAIATPIEYTR-NPLRVFELDFEENLRIIRYC 105
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 24/101 (23%)
Query: 170 AVNLWIGNQLSETSFHKDHYENLYTVVSGQK---------HF-LLLPPTDVHRMYIRQYP 219
VN +IGN L+E +DHYE +Y + G HF + +H +I +
Sbjct: 20 GVNGFIGNHLTERLLREDHYE-VYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHV 78
Query: 220 ------------AAHYSYSRVNDVERFTLELEEPVRYVPWC 248
A Y+R N + F L+ EE +R + +C
Sbjct: 79 KKCDVVLPLVAIATPIEYTR-NPLRVFELDFEENLRIIRYC 118
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 24/101 (23%)
Query: 170 AVNLWIGNQLSETSFHKDHYENLYTVVSGQK---------HF-LLLPPTDVHRMYIRQYP 219
VN +IGN L+E +DHYE +Y + G HF + +H +I +
Sbjct: 20 GVNGFIGNHLTERLLREDHYE-VYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHV 78
Query: 220 ------------AAHYSYSRVNDVERFTLELEEPVRYVPWC 248
A Y+R N + F L+ EE +R + +C
Sbjct: 79 KKCDVVLPLVAIATPIEYTR-NPLRVFELDFEENLRIIRYC 118
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 24/101 (23%)
Query: 170 AVNLWIGNQLSETSFHKDHYENLYTVVSGQK---------HF-LLLPPTDVHRMYIRQYP 219
VN +IGN L+E +DHYE +Y + G HF + +H +I +
Sbjct: 20 GVNGFIGNHLTERLLREDHYE-VYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHV 78
Query: 220 ------------AAHYSYSRVNDVERFTLELEEPVRYVPWC 248
A Y+R N + F L+ EE +R + +C
Sbjct: 79 KKCDVVLPLVAIATPIEYTR-NPLRVFELDFEENLRIIRYC 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,466,041
Number of Sequences: 62578
Number of extensions: 378268
Number of successful extensions: 665
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 653
Number of HSP's gapped (non-prelim): 24
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)