Query 021159
Match_columns 316
No_of_seqs 126 out of 1251
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 08:03:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13621 Cupin_8: Cupin-like d 100.0 1.4E-46 3E-51 339.9 14.0 238 31-311 1-247 (251)
2 KOG2508 Predicted phospholipas 100.0 2.9E-46 6.2E-51 340.4 15.5 297 3-315 7-313 (437)
3 KOG2132 Uncharacterized conser 100.0 2.5E-35 5.4E-40 267.1 4.9 226 19-304 126-354 (355)
4 KOG2130 Phosphatidylserine-spe 100.0 1.9E-33 4.2E-38 252.8 12.8 230 21-308 53-295 (407)
5 KOG2131 Uncharacterized conser 99.8 5.1E-20 1.1E-24 169.3 5.9 230 19-309 27-301 (427)
6 COG2850 Uncharacterized conser 99.6 7.9E-15 1.7E-19 136.2 8.4 187 28-298 14-202 (383)
7 PF08007 Cupin_4: Cupin superf 99.5 9.8E-14 2.1E-18 130.8 7.5 91 168-306 113-206 (319)
8 KOG3706 Uncharacterized conser 98.9 4.9E-10 1.1E-14 107.0 3.3 89 162-296 311-402 (629)
9 PF02373 JmjC: JmjC domain, hy 98.9 2.5E-10 5.5E-15 90.9 -0.0 110 172-309 1-114 (114)
10 KOG1633 F-box protein JEMMA an 98.0 1.1E-05 2.4E-10 83.4 7.0 202 33-304 9-224 (776)
11 KOG2132 Uncharacterized conser 97.8 4.4E-06 9.4E-11 77.2 0.5 95 174-297 179-275 (355)
12 smart00558 JmjC A domain famil 96.2 0.0034 7.4E-08 43.6 2.3 29 170-198 27-57 (57)
13 COG2140 Thermophilic glucose-6 95.3 0.059 1.3E-06 47.5 6.9 26 275-300 125-151 (209)
14 PF00190 Cupin_1: Cupin; Inte 94.3 0.042 9.1E-07 45.6 3.3 33 177-209 42-74 (144)
15 TIGR03037 anthran_nbaC 3-hydro 94.1 0.23 5E-06 42.0 7.2 35 170-204 29-63 (159)
16 PRK13264 3-hydroxyanthranilate 94.0 0.2 4.3E-06 43.2 6.8 72 170-307 35-107 (177)
17 TIGR03404 bicupin_oxalic bicup 91.5 0.75 1.6E-05 44.4 7.8 24 275-299 288-312 (367)
18 PF06560 GPI: Glucose-6-phosph 89.8 0.22 4.7E-06 43.2 2.2 29 274-302 108-137 (182)
19 PF07883 Cupin_2: Cupin domain 89.5 0.74 1.6E-05 32.5 4.5 23 277-299 38-61 (71)
20 PF02041 Auxin_BP: Auxin bindi 89.3 1.2 2.5E-05 37.3 5.9 69 171-299 44-115 (167)
21 COG4101 Predicted mannose-6-ph 88.8 0.32 6.9E-06 39.0 2.3 24 276-299 88-112 (142)
22 TIGR02272 gentisate_1_2 gentis 88.7 0.86 1.9E-05 43.4 5.5 27 275-302 119-146 (335)
23 COG1917 Uncharacterized conser 88.2 2.2 4.9E-05 34.4 7.1 35 170-204 44-79 (131)
24 PRK04190 glucose-6-phosphate i 87.5 0.61 1.3E-05 40.8 3.4 25 275-299 119-144 (191)
25 smart00835 Cupin_1 Cupin. This 87.2 3 6.5E-05 34.4 7.4 25 274-298 73-98 (146)
26 TIGR03404 bicupin_oxalic bicup 87.2 2.9 6.2E-05 40.4 8.2 34 171-205 70-103 (367)
27 COG0662 {ManC} Mannose-6-phosp 86.2 0.74 1.6E-05 37.3 3.1 25 276-301 75-100 (127)
28 PLN02288 mannose-6-phosphate i 84.2 0.61 1.3E-05 45.4 2.0 31 277-307 252-283 (394)
29 KOG1356 Putative transcription 83.1 0.45 9.7E-06 49.7 0.6 44 32-81 531-574 (889)
30 PF05899 Cupin_3: Protein of u 82.9 0.76 1.6E-05 33.6 1.6 18 274-291 42-60 (74)
31 KOG1356 Putative transcription 82.7 0.7 1.5E-05 48.3 1.8 31 272-303 795-826 (889)
32 TIGR01221 rmlC dTDP-4-dehydror 82.0 4.2 9.1E-05 35.1 6.1 37 169-205 44-83 (176)
33 PRK15131 mannose-6-phosphate i 80.3 1.1 2.4E-05 43.5 2.2 32 276-307 237-269 (389)
34 PF06052 3-HAO: 3-hydroxyanthr 79.9 7.9 0.00017 32.4 6.7 70 170-305 34-104 (151)
35 COG3450 Predicted enzyme of th 75.6 2.1 4.5E-05 34.4 2.1 19 274-292 80-99 (116)
36 PF00908 dTDP_sugar_isom: dTDP 75.2 8.8 0.00019 33.1 6.0 76 169-302 43-125 (176)
37 PRK13290 ectC L-ectoine syntha 74.6 2.8 6.2E-05 34.0 2.7 27 275-302 74-101 (125)
38 KOG2508 Predicted phospholipas 74.3 3.4 7.4E-05 39.4 3.5 40 259-300 343-385 (437)
39 COG1482 ManA Phosphomannose is 71.0 2.7 5.8E-05 39.6 2.0 31 276-306 158-189 (312)
40 KOG2107 Uncharacterized conser 69.7 4.6 0.0001 34.3 2.9 32 273-305 113-145 (179)
41 PF06249 EutQ: Ethanolamine ut 68.9 3.8 8.2E-05 34.5 2.3 17 275-291 112-129 (152)
42 COG1898 RfbC dTDP-4-dehydrorha 68.3 19 0.00041 31.0 6.5 35 170-204 46-82 (173)
43 PRK15457 ethanolamine utilizat 66.8 4.6 9.9E-05 36.3 2.5 22 273-294 190-212 (233)
44 PF01238 PMI_typeI: Phosphoman 66.4 2.3 5E-05 41.1 0.6 31 277-307 251-282 (373)
45 PF05523 FdtA: WxcM-like, C-te 63.7 5.3 0.00012 32.6 2.2 33 172-204 34-69 (131)
46 PLN00212 glutelin; Provisional 62.2 24 0.00053 35.4 6.9 21 274-294 391-412 (493)
47 PF03079 ARD: ARD/ARD' family; 61.8 6.9 0.00015 33.1 2.6 26 274-300 113-139 (157)
48 TIGR03027 pepcterm_export puta 60.6 5.3 0.00011 33.8 1.7 17 276-292 148-165 (165)
49 TIGR00218 manA mannose-6-phosp 59.4 4.3 9.4E-05 37.9 1.0 20 276-295 151-171 (302)
50 PF01050 MannoseP_isomer: Mann 59.2 9.3 0.0002 32.1 2.9 36 275-311 101-139 (151)
51 COG4766 EutQ Ethanolamine util 58.9 6.5 0.00014 33.0 1.8 16 276-291 136-152 (176)
52 PF07385 DUF1498: Protein of u 53.0 28 0.0006 31.2 4.9 84 169-294 87-173 (225)
53 COG5285 Protein involved in bi 49.5 36 0.00078 31.8 5.2 38 259-300 180-218 (299)
54 PRK09943 DNA-binding transcrip 46.5 18 0.00039 31.0 2.7 24 275-299 145-169 (185)
55 TIGR03028 EpsE polysaccharide 46.4 11 0.00023 34.0 1.4 14 279-292 225-239 (239)
56 PF12852 Cupin_6: Cupin 42.6 23 0.0005 30.2 2.8 23 276-299 55-78 (186)
57 smart00751 BSD domain in trans 40.3 18 0.00039 24.2 1.4 36 2-41 10-46 (51)
58 COG4297 Uncharacterized protei 39.8 26 0.00055 29.0 2.4 22 273-294 82-104 (163)
59 PF02311 AraC_binding: AraC-li 39.3 29 0.00063 26.8 2.8 25 275-299 40-65 (136)
60 KOG3413 Mitochondrial matrix p 38.3 48 0.001 27.7 3.8 34 164-206 95-128 (156)
61 PF15138 Syncollin: Syncollin 38.2 19 0.00041 28.2 1.4 30 269-299 28-59 (112)
62 TIGR03214 ura-cupin putative a 37.1 34 0.00075 31.2 3.2 26 274-300 216-242 (260)
63 PF04970 LRAT: Lecithin retino 37.0 17 0.00036 29.1 1.0 24 278-301 5-30 (125)
64 PF08007 Cupin_4: Cupin superf 36.6 24 0.00052 33.3 2.1 39 31-72 1-39 (319)
65 COG3822 ABC-type sugar transpo 35.9 1.2E+02 0.0026 26.6 6.0 22 273-294 150-172 (225)
66 TIGR03214 ura-cupin putative a 34.5 40 0.00086 30.8 3.2 23 276-299 98-121 (260)
67 COG3435 Gentisate 1,2-dioxygen 33.9 72 0.0016 30.0 4.6 18 277-294 132-150 (351)
68 COG5553 Predicted metal-depend 31.3 81 0.0018 26.9 4.2 24 177-200 81-104 (191)
69 PRK11171 hypothetical protein; 31.1 44 0.00096 30.6 2.9 27 273-300 220-247 (266)
70 KOG0958 DNA damage-responsive 30.9 21 0.00046 36.8 0.8 116 169-309 173-292 (690)
71 TIGR01479 GMP_PMI mannose-1-ph 30.8 45 0.00098 33.2 3.1 24 275-299 414-438 (468)
72 PLN00212 glutelin; Provisional 30.6 1.9E+02 0.0042 29.1 7.5 39 170-209 82-120 (493)
73 PF03909 BSD: BSD domain ; I 27.6 34 0.00074 23.8 1.2 35 2-40 15-50 (62)
74 PRK11171 hypothetical protein; 27.6 62 0.0013 29.7 3.2 23 276-299 101-124 (266)
75 KOG1633 F-box protein JEMMA an 27.2 33 0.00072 36.4 1.5 40 273-312 545-585 (776)
76 COG1791 Uncharacterized conser 26.2 67 0.0014 27.6 2.8 31 273-303 115-146 (181)
77 PRK11702 hypothetical protein; 26.1 25 0.00055 27.8 0.3 42 5-49 11-59 (108)
78 KOG3995 3-hydroxyanthranilate 25.6 1.7E+02 0.0038 26.0 5.4 36 169-204 33-68 (279)
79 PF13759 2OG-FeII_Oxy_5: Putat 25.5 49 0.0011 25.2 1.8 27 273-299 63-90 (101)
80 KOG0426 Ubiquitin-protein liga 24.8 54 0.0012 26.8 1.9 39 3-49 5-43 (165)
81 PRK15460 cpsB mannose-1-phosph 24.2 73 0.0016 31.9 3.2 25 275-300 423-448 (478)
82 PF04962 KduI: KduI/IolB famil 24.2 64 0.0014 29.6 2.6 25 276-300 210-234 (261)
83 PRK10296 DNA-binding transcrip 24.2 64 0.0014 29.2 2.7 20 276-295 61-81 (278)
84 PF05721 PhyH: Phytanoyl-CoA d 23.7 63 0.0014 27.0 2.4 28 273-300 177-205 (211)
85 cd02786 MopB_CT_3 The MopB_CT_ 23.3 40 0.00087 26.1 1.0 14 280-294 70-84 (116)
86 TIGR02272 gentisate_1_2 gentis 23.2 2.7E+02 0.0058 26.6 6.7 26 276-302 288-314 (335)
87 KOG2757 Mannose-6-phosphate is 23.1 52 0.0011 31.7 1.8 29 277-305 249-278 (411)
88 PRK13502 transcriptional activ 22.3 61 0.0013 29.4 2.1 21 275-295 55-76 (282)
89 cd02791 MopB_CT_Nitrate-R-NapA 21.1 99 0.0021 24.0 2.9 19 276-294 66-88 (122)
90 PF08255 Leader_Trp: Trp-opero 20.7 41 0.00089 16.5 0.3 10 285-294 3-13 (14)
91 PF01476 LysM: LysM domain; I 20.6 44 0.00094 20.9 0.6 10 280-289 35-44 (44)
92 TIGR03028 EpsE polysaccharide 20.3 61 0.0013 29.1 1.6 16 275-290 146-162 (239)
93 PF06251 Caps_synth_GfcC: Caps 20.3 63 0.0014 28.8 1.7 12 278-289 191-202 (229)
No 1
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=100.00 E-value=1.4e-46 Score=339.86 Aligned_cols=238 Identities=28% Similarity=0.559 Sum_probs=174.5
Q ss_pred HHHHHHHhhcCCCCEEEEcCCCCCCCccccCCCC----hhhHHHhcCCCCcEEEEeccCCCCCcccccCCCCCCcccccc
Q 021159 31 PLQFLRDYVSQNKPCIIKNVSLHHQWPAFSLWPH----PSYLSKTLSSSPPVSVHLSPNGRADSLVTLTHPRSGEISQCF 106 (316)
Q Consensus 31 ~~~F~~~y~~~~~PvVi~g~~~~~~WpA~~~Wt~----~eyL~~~~G~~~~V~V~~~~~~~~d~~~~~~~~~~g~~~~~F 106 (316)
|++|+++|+.+++||||+|++. +|+|+++|+. ++||++.+|+. .|.|...+.+..+...... ...+
T Consensus 1 p~eF~~~~~~~~~PvVi~g~~~--~w~a~~~W~~~~~~~~~l~~~~g~~-~v~~~~~~~~~~~~~~~~~-------~~~~ 70 (251)
T PF13621_consen 1 PEEFFERYVKPNKPVVIRGAAA--DWPAFQKWTDDEYLLDYLKEKYGDV-PVPVRDSPNGISDSFGYND-------DRKF 70 (251)
T ss_dssp -HHHHHHTCCTT--EEEESSST--TCCHHHH-S-----HHHHHHHHTSS-EEEEEEEST--SSBTS-B--------GCCC
T ss_pred CHHHHHHHhCCCCCEEEeCCcc--CCchhhhccchhHHHHHHHHHcCCe-EEEEEecCCcccccccccc-------cccc
Confidence 6899999999999999999999 9999999995 69999999999 9999866543332221100 1122
Q ss_pred cccceeeecHHHHHHHHhccCC--CCccccccccccccchhhhhhhcccccchhhhHHhhCCCCCeeEEEeeCCCCCCCc
Q 021159 107 ASAHVERLPFDEALQLVSNSKN--GDVVAYLQQQNDCFRDEYSVLGSDCDEHIAWATEALGCYPEAVNLWIGNQLSETSF 184 (316)
Q Consensus 107 ~~~~~~~mt~~efl~~~~~~~~--~~~~~Yl~~~~~~l~~~~p~L~~D~~~~~p~~~~~~~~~~~~~~lwiG~~gs~t~~ 184 (316)
.......|+|++|++.+..... ....+|+.. ..+..++|.|.+|. .+|+....++......+||||++|+.|++
T Consensus 71 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~~--~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~ig~~gs~t~l 146 (251)
T PF13621_consen 71 VNFERERMPFRDFLDRLRANRDQRDKPYYYLQN--WNLFEDFPELREDN--DLPFPPELFGKEPQSSNLWIGPPGSFTPL 146 (251)
T ss_dssp TCEEEEEEEHHHHHHHHHHSCHSTSSSEEEEEE--ETHHHHSHHHHCCS---CHHHHCHSCCHCCEEEEEEE-TTEEEEE
T ss_pred cCCeeEECcHHHHHHHHHhcccccCCceEEEec--CchHHHhhhhhhcc--ccccchhhcccCccccEEEEeCCCceeee
Confidence 2346789999999999998652 235677764 34667889999984 57776667765566889999999999999
Q ss_pred cccCCCcEEEEEEeEEEEEEeCCCCCCCCcccccCCcccccccccCCcceeeeccCCcccccccccCCCCCccccccccc
Q 021159 185 HKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWCSVNPYPSPETRESEMA 264 (316)
Q Consensus 185 H~D~~~n~~~qv~G~Kr~~L~pP~~~~~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vd~~~~~~~~~pd~~ 264 (316)
|+|..+|++|||.|+|+|+||||.+...||+.+..+ .+..++.+|+ .++|.+
T Consensus 147 H~D~~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~----------------------~~~~~~~~d~------~~~d~~ 198 (251)
T PF13621_consen 147 HYDPSHNLLAQIRGRKRWILFPPDDSPNLYPRPDSH----------------------GGTVFSWVDP------DNPDLE 198 (251)
T ss_dssp EE-SSEEEEEEEESEEEEEEE-GGGGGGCTBETTTS----------------------T-TCBBSS-T------TS--TT
T ss_pred eECchhhhhhccCCCEEEEEECCccccccccceecc----------------------cccceeeeec------cChhhh
Confidence 999999999999999999999999999999775311 1233567888 789999
Q ss_pred cCCCccCCCccEEEEEcCCCEEeeC-cCcceeeec--CCcchhhhcccCc
Q 021159 265 KFPLYFNGPKPFECTVNAGEILYLL-IWFRKAVRN--SEVNVVELMQAKH 311 (316)
Q Consensus 265 ~fP~~~~~~~~~~~~L~pGD~LfiP-gWwH~vv~~--~~~~v~~~~~~~~ 311 (316)
+||++++ +++++|+|+|||+|||| ||||+|.+. .++||++|.+|+.
T Consensus 199 ~~p~~~~-~~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~ 247 (251)
T PF13621_consen 199 RFPKFRK-APPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRT 247 (251)
T ss_dssp T-CGGGG---EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEES
T ss_pred hhhhhcc-CceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEecc
Confidence 9999998 89999999999999999 999994444 3569999998875
No 2
>KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism]
Probab=100.00 E-value=2.9e-46 Score=340.41 Aligned_cols=297 Identities=39% Similarity=0.652 Sum_probs=255.0
Q ss_pred HHHHHHHHhhhhcCCCCCceeeeCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCccccCCCChhhHHHhcCCCCcEEEEe
Q 021159 3 EVKKLWDEVRELSLGSNSTIERLESPPTPLQFLRDYVSQNKPCIIKNVSLHHQWPAFSLWPHPSYLSKTLSSSPPVSVHL 82 (316)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~I~ri~~~~s~~~F~~~y~~~~~PvVi~g~~~~~~WpA~~~Wt~~eyL~~~~G~~~~V~V~~ 82 (316)
|++.||+|+|||.++. .|.++|..+|+.+|+++|+++|+|||||..+. +|||.++|+..+||.+++|+. .|.|.+
T Consensus 7 e~~~llre~relcvp~--~v~~lD~~Ptpl~Fyr~fvs~n~PvIIrkAL~--hWpal~lWs~p~Yl~~algd~-vvsvai 81 (437)
T KOG2508|consen 7 EYKGLLREVRELCVPV--LVNLLDLTPTPLDFYRKFVSTNTPVIIRKALP--HWPALKLWSQPDYLLSALGDI-VVSVAI 81 (437)
T ss_pred HHHhhhHHHhhccccc--ccccccCCCchHHHHHhhhcCCCcEEEecccc--cCchhhccCchHHHHHhccCe-EEEEEe
Confidence 5788999999998877 89999988999999999999999999999999 999999999988999999999 999999
Q ss_pred ccCCCCC-cccccCCCCCCcccccccccceeeecHHHHHHHHhccCCCCccccccccccccchhhhhhhccccc-chhhh
Q 021159 83 SPNGRAD-SLVTLTHPRSGEISQCFASAHVERLPFDEALQLVSNSKNGDVVAYLQQQNDCFRDEYSVLGSDCDE-HIAWA 160 (316)
Q Consensus 83 ~~~~~~d-~~~~~~~~~~g~~~~~F~~~~~~~mt~~efl~~~~~~~~~~~~~Yl~~~~~~l~~~~p~L~~D~~~-~~p~~ 160 (316)
+++|.+| +... | ...|..+...+|+++|.+..+.....++...|+++++++++.++|.|..|+.. +++|+
T Consensus 82 tPngyadgav~~------g--~e~f~~pae~KlklsevL~vl~~~~~~~~Vly~qkQ~snl~~elp~la~Dl~~~d~~wa 153 (437)
T KOG2508|consen 82 TPNGYADGAVMS------G--NEMFIKPAEQKLKLSEVLYVLTQYDESNEVLYGQKQNSNLVKELPPLATDLLLTDFSWA 153 (437)
T ss_pred CCCCcccccccc------C--cceeechhhhhccchhhheehhcccCCCceeehhhhccccccccccccccccccccccc
Confidence 9999988 4321 1 24565666679999999999998877788999999999999999999999876 78999
Q ss_pred HHhhCCCCCeeEEEeeCCCCCCCccccCCCcEEEEEEeEEEEEEeCCCCCCCCcccccCCcccccccccCCcceeee--c
Q 021159 161 TEALGCYPEAVNLWIGNQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLE--L 238 (316)
Q Consensus 161 ~~~~~~~~~~~~lwiG~~gs~t~~H~D~~~n~~~qv~G~Kr~~L~pP~~~~~ly~~~~~~~~~~~~~~~~~~~~~~~--~ 238 (316)
+.+||+.|...|||||...++|.+|.|+++|++|+|+|.|+|+|+||.+.++|+..-+|++.|+.+ .+++.+.++ -
T Consensus 154 ~eafgk~PdavNlWiG~~~avTSlHkDhyENlYaViSGeKhFvlipP~d~~~lp~eiyp~g~ysy~--~e~g~fk~e~~d 231 (437)
T KOG2508|consen 154 PEAFGKVPDAVNLWIGKSEAVTSLHKDHYENLYAVISGEKHFVLIPPDDANQLPLEIYPNGLYSYE--GEDGPFKSEGLD 231 (437)
T ss_pred HHHhCCChhheeeeecccccccccccccccceEEEEeccceEEEeCcccccccceeecCCcceeee--cCCCceeecccc
Confidence 999999999999999999999999999999999999999999999999999999999999998875 234445554 2
Q ss_pred cCCccc-ccccccCCCCCccccccccccCCCccCCCccEEEEEcCCCEEeeC-cCcceeeecC----CcchhhhcccCcc
Q 021159 239 EEPVRY-VPWCSVNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLL-IWFRKAVRNS----EVNVVELMQAKHV 312 (316)
Q Consensus 239 ~~~~~~-~~~s~vd~~~~~~~~~pd~~~fP~~~~~~~~~~~~L~pGD~LfiP-gWwH~vv~~~----~~~v~~~~~~~~~ 312 (316)
+++..- ..|+.+|++++++....+..++|.+.....+..+.+.+|+++|.| .|+|+ +... +-.|.+|.+-+--
T Consensus 232 Ee~~~~a~~~~svd~~~s~~~~a~~~~k~~l~~~~~k~~~~rv~a~~i~~lp~~w~h~-~sq~~gd~~~~Iavn~~~d~~ 310 (437)
T KOG2508|consen 232 EEDAAIAKTWFSVDPIGSPKELAVPQEKIPLLEAEYKPEMDRVLAGQILYLPEDWFHH-VSQVGGDPESDIAVNEWYDIE 310 (437)
T ss_pred hhhhhhcceeeeecccCCHHHhccchhhCccccccccceeeeeeccccccChhhhhhh-ccccCCCccceeEEeeecccc
Confidence 223222 349999999888777778899999987789999999999999999 99999 6665 4556666555544
Q ss_pred ccc
Q 021159 313 VSS 315 (316)
Q Consensus 313 ~~~ 315 (316)
++|
T Consensus 311 ~ds 313 (437)
T KOG2508|consen 311 ADS 313 (437)
T ss_pred ccc
Confidence 443
No 3
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-35 Score=267.07 Aligned_cols=226 Identities=21% Similarity=0.370 Sum_probs=183.0
Q ss_pred CCceeeeCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCccccCCCChhhHHHhcCCCCcEEEEeccCCCCCcccccCCCC
Q 021159 19 NSTIERLESPPTPLQFLRDYVSQNKPCIIKNVSLHHQWPAFSLWPHPSYLSKTLSSSPPVSVHLSPNGRADSLVTLTHPR 98 (316)
Q Consensus 19 ~~~I~ri~~~~s~~~F~~~y~~~~~PvVi~g~~~~~~WpA~~~Wt~~eyL~~~~G~~~~V~V~~~~~~~~d~~~~~~~~~ 98 (316)
++.++..+ .++.++|..+++.++.|++++|... +|||.++|.. +||....|.+ +|.|++... +.+.
T Consensus 126 ~~~~~~~~-~~~l~~~l~d~~~~~~p~~~l~~~~--hwpa~~kw~l-~~l~~va~~r-TvpvEvg~~-y~~~-------- 191 (355)
T KOG2132|consen 126 EIDVPGED-RLSLQEFLNDTVGRGTPVILLGFNW--HWPAIQKWSL-GYLQQVAGNR-TVPVEVGST-YADE-------- 191 (355)
T ss_pred hhhhcccc-chHHHHHHHHhhcCCCceEEecccc--cchHhhhcch-hHHHhcccce-eeeeecccc-cchh--------
Confidence 44556666 4899999999999999999999999 9999999965 9999999999 999987532 1111
Q ss_pred CCcccccccccceeeecHHHHHHHHhccCCCCccccccccccccchhhhhhhcccccchhhhHHhhCCC--CCeeEEEee
Q 021159 99 SGEISQCFASAHVERLPFDEALQLVSNSKNGDVVAYLQQQNDCFRDEYSVLGSDCDEHIAWATEALGCY--PEAVNLWIG 176 (316)
Q Consensus 99 ~g~~~~~F~~~~~~~mt~~efl~~~~~~~~~~~~~Yl~~~~~~l~~~~p~L~~D~~~~~p~~~~~~~~~--~~~~~lwiG 176 (316)
.....-|++.+|+.+.....+. +..|+++.. +..+.|+|..|+ .+|....+.+.. ....+.|+|
T Consensus 192 ---------~w~q~l~t~~~g~~R~~~~~p~-~~~YlAqh~--lfdqi~elk~Di--~iPDyc~~~~f~~~~v~~~~w~G 257 (355)
T KOG2132|consen 192 ---------DWSQNLMTQIKGIKRCILFEPR-ECLYLAQHH--LFDQIPELKFDI--SIPDYCSFPNFENEVVDINAWIG 257 (355)
T ss_pred ---------HHHhhhHHHhhhhhhhhcCCcc-ccchhhhhh--hhccchhhhhcc--CCCceeecCCCCccccceeEEec
Confidence 1123578888898887765543 466777654 556778899998 466211122322 368899999
Q ss_pred CCCCCCCccccCCCcEEEEEEeEEEEEEeCCCCCCCCcccccCCcccccccccCCcceeeeccCCcccccccccCCCCCc
Q 021159 177 NQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWCSVNPYPSP 256 (316)
Q Consensus 177 ~~gs~t~~H~D~~~n~~~qv~G~Kr~~L~pP~~~~~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vd~~~~~ 256 (316)
++|++||+|.|+.+|+++||.|+|+|+|++|..+.++||...+ ....|+||.
T Consensus 258 paGtV~pih~dp~hNi~~qv~G~k~i~l~~p~~s~~lyP~d~~------------------------~~~tsqvdv---- 309 (355)
T KOG2132|consen 258 PAGTVLPIHMDPWHNILSQVFGRKRIRLYPPEDSGALYPTDTY------------------------LLETSQVDV---- 309 (355)
T ss_pred cCCceeccccccccceeeeeecceEEEEecCcccCCCCCccch------------------------hhccccccc----
Confidence 9999999999999999999999999999999999999976421 122578998
Q ss_pred cccccccccCCCccCCCccEEEEEcCCCEEeeC-cCcceeeecCCcchh
Q 021159 257 ETRESEMAKFPLYFNGPKPFECTVNAGEILYLL-IWFRKAVRNSEVNVV 304 (316)
Q Consensus 257 ~~~~pd~~~fP~~~~~~~~~~~~L~pGD~LfiP-gWwH~vv~~~~~~v~ 304 (316)
++||+++||+|++ ++.++|+|+|||+|||| -|||. |++++.+++
T Consensus 310 --enPdlk~fp~~~k-~~~l~~lL~pGe~L~iP~kwwhy-vrs~d~s~s 354 (355)
T KOG2132|consen 310 --ENPDLKAFPKFAK-ARFLDCLLEPGEALFIPPKWWHY-VRSLDKSFS 354 (355)
T ss_pred --CCCChhhhhHHHH-HHHHHHhcCCchhccccHHHhhh-hhhcccccc
Confidence 9999999999998 99999999999999999 99999 999888765
No 4
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-33 Score=252.76 Aligned_cols=230 Identities=20% Similarity=0.362 Sum_probs=175.7
Q ss_pred ceeeeC-CCCCHHHHHHHhhcCCCCEEEEcCCCCCCCccccCCCChhhHHHhcCCCCcEEEEeccCCCCCcccccCCCCC
Q 021159 21 TIERLE-SPPTPLQFLRDYVSQNKPCIIKNVSLHHQWPAFSLWPHPSYLSKTLSSSPPVSVHLSPNGRADSLVTLTHPRS 99 (316)
Q Consensus 21 ~I~ri~-~~~s~~~F~~~y~~~~~PvVi~g~~~~~~WpA~~~Wt~~eyL~~~~G~~~~V~V~~~~~~~~d~~~~~~~~~~ 99 (316)
.+.|++ ..+|.++|.++|-++.+||||+|++. .|+|..+||. ++|.++||+. ++.+....
T Consensus 53 n~~r~~~~~isveeF~~~ferp~kPVll~g~~D--gW~A~ekWT~-drLskkyrnq-~Fkcged~--------------- 113 (407)
T KOG2130|consen 53 NGNRERRRNISVEEFIERFERPYKPVLLSGLTD--GWPASEKWTL-DRLSKKYRNQ-KFKCGEDN--------------- 113 (407)
T ss_pred cchhhhhcCCCHHHHHHHhcccCCceEeecccc--CCchhhhhhH-HHHHHHhcCc-cccccccC---------------
Confidence 445555 35999999999999999999999999 9999999997 9999999998 77653211
Q ss_pred CcccccccccceeeecHHHHHHHHhccCCCCccccccccccccchhhh--hhhcccccchh--hhHHhh---C--CCCCe
Q 021159 100 GEISQCFASAHVERLPFDEALQLVSNSKNGDVVAYLQQQNDCFRDEYS--VLGSDCDEHIA--WATEAL---G--CYPEA 170 (316)
Q Consensus 100 g~~~~~F~~~~~~~mt~~efl~~~~~~~~~~~~~Yl~~~~~~l~~~~p--~L~~D~~~~~p--~~~~~~---~--~~~~~ 170 (316)
++....|.|..|++++.+... ...+|+.+. .+.+..| .|.+|+ .+| |.++.| | +.|..
T Consensus 114 --------~gnsv~MKmkyY~~Ym~~~Rd-dsPLYiFDs--sFgE~~~~rkLl~dY--~VPk~F~dDlF~y~g~e~RPpy 180 (407)
T KOG2130|consen 114 --------NGNSVKMKMKYYIEYMKSTRD-DSPLYIFDS--SFGEHAPRRKLLEDY--SVPKYFRDDLFQYLGEERRPPY 180 (407)
T ss_pred --------CCcceeeeHHHHHHHHhcccc-CCCeEEecc--hhhcccchhhhhhhc--CcchhhhHHHHHhcCcccCCCc
Confidence 113579999999999987643 468999853 3555555 789998 577 555555 3 25678
Q ss_pred eEEEeeCCCCCCCccccCCCc--EEEEEEeEEEEEEeCCCCCCCCcccccCCcccccccccCCcceeeeccCCccccccc
Q 021159 171 VNLWIGNQLSETSFHKDHYEN--LYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWC 248 (316)
Q Consensus 171 ~~lwiG~~gs~t~~H~D~~~n--~~~qv~G~Kr~~L~pP~~~~~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 248 (316)
.+|.||+++++|.+|.||... +.++|+|+|||.||||...+.+-.- .+. +++ .++.....|+
T Consensus 181 RWfvmGParSGtsiHIDPlgTSAWNtll~GhKrW~LfPp~~p~~lvkv-~~~---------e~g------~~~de~itwf 244 (407)
T KOG2130|consen 181 RWFVMGPARSGTSIHIDPLGTSAWNTLLQGHKRWVLFPPGTPPELVKV-TVD---------EGG------KQPDEIITWF 244 (407)
T ss_pred eeEEecCCCCCceeEECCcchHHHHHHhhccceeEEcCCCCCCCceee-ccc---------ccC------CCCcceechh
Confidence 999999999999999998654 6899999999999999998765421 110 222 1233344565
Q ss_pred ccCCCCCccccccccccCCCccCCCccEEEEEcCCCEEeeC-cCcceeeecCCcchhhhcc
Q 021159 249 SVNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLL-IWFRKAVRNSEVNVVELMQ 308 (316)
Q Consensus 249 ~vd~~~~~~~~~pd~~~fP~~~~~~~~~~~~L~pGD~LfiP-gWwH~vv~~~~~~v~~~~~ 308 (316)
+.= | +..++|......++++|++.|||++||| ||||- |-|++.+|+|.-+
T Consensus 245 ~~~-y--------~rt~~Pswp~E~kPIEc~q~pGEt~fVP~GWWHv-VlNle~TIAiTqN 295 (407)
T KOG2130|consen 245 STI-Y--------PRTQLPSWPDEYKPIECLQKPGETMFVPSGWWHV-VLNLEPTIAITQN 295 (407)
T ss_pred hhc-c--------ccccCCCCccccCCceeeecCCceEEecCCeEEE-EeccCceeeeeec
Confidence 431 1 1467777776688999999999999999 99999 8899999976543
No 5
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=99.80 E-value=5.1e-20 Score=169.29 Aligned_cols=230 Identities=19% Similarity=0.235 Sum_probs=138.8
Q ss_pred CCceeeeCC-CCCHHHHHHHhhcCCCCEEEEcCCCCCCCccc----cCCCC------h-----hhHHHhcCCCCcEEEEe
Q 021159 19 NSTIERLES-PPTPLQFLRDYVSQNKPCIIKNVSLHHQWPAF----SLWPH------P-----SYLSKTLSSSPPVSVHL 82 (316)
Q Consensus 19 ~~~I~ri~~-~~s~~~F~~~y~~~~~PvVi~g~~~~~~WpA~----~~Wt~------~-----eyL~~~~G~~~~V~V~~ 82 (316)
...|+|+.+ .++.+.|.+.|...+.||+|.++.. +|++. ..|.+ + .|.+.+..+. .+.|..
T Consensus 27 r~~v~r~~g~~~d~~~~a~~~~~k~~~v~is~v~~--d~~~~~~~~~s~~dl~~~~~l~n~~~~f~k~~v~~~-~~~v~~ 103 (427)
T KOG2131|consen 27 RPCVLRLIGPTADYGDFAERDTHKRPGVLISYVLE--DWPCVSRDNESGADLNNNPDLKNFARSFAKRIVQNG-DKNVFL 103 (427)
T ss_pred hhhhhhhcccccCcccchhhhcccCCCcccccccc--CcccccCCCcchhhhccCcchhHHHHHHhHHHHhcC-Cccccc
Confidence 345677763 5789999999999999999999999 99998 45521 1 2444444443 444444
Q ss_pred ccCCCCCcccccCCCCCCcccccccccceeeecHHHHHHHHhccCCC-Cccccccccc-----ccc-chhhhhh-hccc-
Q 021159 83 SPNGRADSLVTLTHPRSGEISQCFASAHVERLPFDEALQLVSNSKNG-DVVAYLQQQN-----DCF-RDEYSVL-GSDC- 153 (316)
Q Consensus 83 ~~~~~~d~~~~~~~~~~g~~~~~F~~~~~~~mt~~efl~~~~~~~~~-~~~~Yl~~~~-----~~l-~~~~p~L-~~D~- 153 (316)
+... .|-+.++..+++.+|+..+.+.... ...+|++... ..+ ..+-|.| .+|.
T Consensus 104 ~~~s------------------~f~~~~~Le~ny~d~~v~~a~~~e~e~~~l~lad~~~~e~~~~~~~~q~p~ly~kDwH 165 (427)
T KOG2131|consen 104 CDLS------------------LFPDYEYLERNYGDFVVPVANCNEKERYSLKLADWEFREEQVQLACPQAPSLYGKDWH 165 (427)
T ss_pred cccc------------------cCccHHHHHhhhhhcchhhccccchhhhhhhhccchhHHHhHhhhcCCCccccccchh
Confidence 3221 1222244566777777666553211 1112222110 000 0000111 1111
Q ss_pred -----cc----chh--hhHHhh------CCCCCeeEEEeeCCCCCCCccccCCC--cEEEEEEeEEEEEEeCCCCCCCCc
Q 021159 154 -----DE----HIA--WATEAL------GCYPEAVNLWIGNQLSETSFHKDHYE--NLYTVVSGQKHFLLLPPTDVHRMY 214 (316)
Q Consensus 154 -----~~----~~p--~~~~~~------~~~~~~~~lwiG~~gs~t~~H~D~~~--n~~~qv~G~Kr~~L~pP~~~~~ly 214 (316)
.. ..| |+.+-+ +........++|++||.||+|-|.++ .+.+.|.|+|+|.|+||.+...|+
T Consensus 166 L~~~~d~~~~~~~pd~F~~dwlne~~i~~~~ddyrFvy~Gp~gSwtp~HaDVf~s~swS~nicG~KrWl~~pP~qe~~l~ 245 (427)
T KOG2131|consen 166 LYRFLDNDFPYWTPDLFAKDWLNEFVIDGESDDYRFVYAGPAGSWTPFHADVFHSPSWSVNICGRKRWLLYPPEQEQTLA 245 (427)
T ss_pred eeeecCcccccccchhhhhcccchhhccCCCCceeEEEeccCCCCCccchhhhcCCcceeeeecceeEEEeChHHhhhhh
Confidence 11 112 111111 11235778999999999999999665 568999999999999999988777
Q ss_pred ccccCCcccccccccCCcceeeeccCCcccccccccCCCCCccccccccccCCCccCCCccEEEEEcCCCEEeeC-cCcc
Q 021159 215 IRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWCSVNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLL-IWFR 293 (316)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vd~~~~~~~~~pd~~~fP~~~~~~~~~~~~L~pGD~LfiP-gWwH 293 (316)
.. +.. .+++ ++ .+-++.| . .+.+++.++|||++|+| ||.|
T Consensus 246 dr-~gn------------------------lp~~-~~--------~~~ld~~----~-~~~lei~Qepge~VFvPsGW~h 286 (427)
T KOG2131|consen 246 DR-YGN------------------------LPLP-SW--------ITKLDLF----R-GPLLEIFQEPGETVFVPSGWHH 286 (427)
T ss_pred hh-ccC------------------------cCCc-cc--------ccccccc----c-cchhhhhccCCceeeccCcccc
Confidence 43 110 0110 11 1112222 1 66799999999999999 9999
Q ss_pred eeeecCCcchhhhccc
Q 021159 294 KAVRNSEVNVVELMQA 309 (316)
Q Consensus 294 ~vv~~~~~~v~~~~~~ 309 (316)
| |-|++.+|+||-++
T Consensus 287 Q-V~NL~dTISINHNW 301 (427)
T KOG2131|consen 287 Q-VLNLGDTISINHNW 301 (427)
T ss_pred c-cccccceeeecccc
Confidence 9 99999999988665
No 6
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=7.9e-15 Score=136.19 Aligned_cols=187 Identities=19% Similarity=0.235 Sum_probs=112.6
Q ss_pred CCCHHHHHHHhhcCCCCEEEEcCCCCCCCccccCCCChhhHHHhcCCCCcEEEEeccCCCCCcccccCCCCCCccccccc
Q 021159 28 PPTPLQFLRDYVSQNKPCIIKNVSLHHQWPAFSLWPHPSYLSKTLSSSPPVSVHLSPNGRADSLVTLTHPRSGEISQCFA 107 (316)
Q Consensus 28 ~~s~~~F~~~y~~~~~PvVi~g~~~~~~WpA~~~Wt~~eyL~~~~G~~~~V~V~~~~~~~~d~~~~~~~~~~g~~~~~F~ 107 (316)
.+|+++|+++|+ ..||+||||+.. +. .+.-+. +-|+..+-.. .|+-+.-.....+ +
T Consensus 14 glt~~~FL~~YW-qkKPlliR~a~p--~~--~~p~~p-deLa~La~~e-dV~srLV~~~~~~--------------~--- 69 (383)
T COG2850 14 GLTPEDFLRDYW-QKKPLLIRNAFP--EF--HSPLSP-DELAGLAQEE-DVTSRLVSHESDG--------------T--- 69 (383)
T ss_pred CCCHHHHHHHHh-hhcchHHhhccc--cc--ccCCCH-HHHHHHhccc-cccchhhhhccCC--------------c---
Confidence 599999999999 669999999887 42 223232 3488777666 6654432111011 1
Q ss_pred ccceeeecHHHHHHHHhccCCCCccccccccc-cccchhhhhhhcccccchhhhHHhhCCCCCeeEEEeeCCCCCCCccc
Q 021159 108 SAHVERLPFDEALQLVSNSKNGDVVAYLQQQN-DCFRDEYSVLGSDCDEHIAWATEALGCYPEAVNLWIGNQLSETSFHK 186 (316)
Q Consensus 108 ~~~~~~mt~~efl~~~~~~~~~~~~~Yl~~~~-~~l~~~~p~L~~D~~~~~p~~~~~~~~~~~~~~lwiG~~gs~t~~H~ 186 (316)
.....-+|.++ +..... ..+-+-.++ ..+..+...|.+-++ .+| + -....+.+.....|.+...|+
T Consensus 70 -w~~~~gPfe~~-d~~~~p----~~wsllvq~vd~w~p~v~~l~~~Fr-flP---~---wr~ddiMIS~a~~GGgvg~H~ 136 (383)
T COG2850 70 -WQVSHGPFEEE-DFLGLP----RNWSLLVQAVDHWHPEVAALMEPFR-FLP---D---WRIDDIMISFAAPGGGVGPHF 136 (383)
T ss_pred -eeEeeCccchh-ccccCC----cCceEEEehhhhcCHHHHHHHHHhc-cCc---c---ccccceEEEEecCCCccCccc
Confidence 02233444433 111110 122222221 112233344555443 233 0 012355666777888999999
Q ss_pred cCCCcEEEEEEeEEEEEEeCCCCCCCCcccccCCcccccccccCCcceeeeccCCcccccccccCCCCCccccccccccC
Q 021159 187 DHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWCSVNPYPSPETRESEMAKF 266 (316)
Q Consensus 187 D~~~n~~~qv~G~Kr~~L~pP~~~~~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vd~~~~~~~~~pd~~~f 266 (316)
|.|++|++|.+|+|||.|-.+.+....++.+. .. ..++
T Consensus 137 D~YDVfliQg~G~RRW~v~~~~~~~~~~~~~d------------~~----------------~~~~-------------- 174 (383)
T COG2850 137 DQYDVFLIQGQGRRRWRVGKKCNMSTLCPHPD------------LL----------------ILAP-------------- 174 (383)
T ss_pred cchheeEEeecccceeecCCcccccCcCCCcc------------hh----------------hcCC--------------
Confidence 99999999999999999988877655554221 00 0111
Q ss_pred CCccCCCccEEEEEcCCCEEeeC-cCcceeeec
Q 021159 267 PLYFNGPKPFECTVNAGEILYLL-IWFRKAVRN 298 (316)
Q Consensus 267 P~~~~~~~~~~~~L~pGD~LfiP-gWwH~vv~~ 298 (316)
.....+.+|+|||+|||| +|||+-|..
T Consensus 175 -----f~~~~d~vlepGDiLYiPp~~~H~gvae 202 (383)
T COG2850 175 -----FEPDIDEVLEPGDILYIPPGFPHYGVAE 202 (383)
T ss_pred -----CCchhhhhcCCCceeecCCCCCcCCccc
Confidence 145578899999999999 999998877
No 7
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=99.46 E-value=9.8e-14 Score=130.76 Aligned_cols=91 Identities=21% Similarity=0.339 Sum_probs=56.8
Q ss_pred CCeeEEEeeCCC-CCCCccccCCCcEEEEEEeEEEEEEeCCCCCCC-CcccccCCcccccccccCCcceeeeccCCcccc
Q 021159 168 PEAVNLWIGNQL-SETSFHKDHYENLYTVVSGQKHFLLLPPTDVHR-MYIRQYPAAHYSYSRVNDVERFTLELEEPVRYV 245 (316)
Q Consensus 168 ~~~~~lwiG~~g-s~t~~H~D~~~n~~~qv~G~Kr~~L~pP~~~~~-ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (316)
....|++++++| .+.+.|+|.+++|++|+.|+|+|.|+.+..... .+.
T Consensus 113 ~~~~n~Y~tp~g~~g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~------------------------------ 162 (319)
T PF08007_consen 113 PVGANAYLTPPGSQGFGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYS------------------------------ 162 (319)
T ss_dssp -EEEEEEEETSSBEESECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSC------------------------------
T ss_pred ccceEEEecCCCCCCccCEECCcccEEEECCceeEEEECCCCcccccccC------------------------------
Confidence 457899999998 579999999999999999999999999433211 110
Q ss_pred cccccCCCCCccccccccccCCCccCCCccEEEEEcCCCEEeeC-cCcceeeecCCcchhhh
Q 021159 246 PWCSVNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLL-IWFRKAVRNSEVNVVEL 306 (316)
Q Consensus 246 ~~s~vd~~~~~~~~~pd~~~fP~~~~~~~~~~~~L~pGD~LfiP-gWwH~vv~~~~~~v~~~ 306 (316)
..+ +... .......+++|+|||+|||| ||||++++. +.|+-+.
T Consensus 163 ---~~~-----------~~~~---~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~-~~S~hlt 206 (319)
T PF08007_consen 163 ---DQP-----------FKQL---EEFEPVEEVVLEPGDVLYLPRGWWHQAVTT-DPSLHLT 206 (319)
T ss_dssp ---E-------------TTTC---G--STSEEEEE-TT-EEEE-TT-EEEEEES-S-EEEEE
T ss_pred ---CCC-----------cccc---ccCceeEEEEECCCCEEEECCCccCCCCCC-CCceEEE
Confidence 001 0111 11145689999999999999 999995544 4555433
No 8
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=4.9e-10 Score=106.99 Aligned_cols=89 Identities=27% Similarity=0.379 Sum_probs=66.8
Q ss_pred HhhCCCCCeeEEEeeCCCC-CCCccccCCCcEEEEEEeEEEEEEeCCCCCCC-CcccccCCcccccccccCCcceeeecc
Q 021159 162 EALGCYPEAVNLWIGNQLS-ETSFHKDHYENLYTVVSGQKHFLLLPPTDVHR-MYIRQYPAAHYSYSRVNDVERFTLELE 239 (316)
Q Consensus 162 ~~~~~~~~~~~lwiG~~gs-~t~~H~D~~~n~~~qv~G~Kr~~L~pP~~~~~-ly~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (316)
..||+. ...|+++.++|| +-+.|||--+.|++||.|||+|+||.|..... |+.-.
T Consensus 311 eqFgc~-vGaNvYLTPagSqGfaPHyDdIeaFvlQvEGrK~Wrly~P~~~~eel~l~s---------------------- 367 (629)
T KOG3706|consen 311 EQFGCL-VGANVYLTPAGSQGFAPHYDDIEAFVLQVEGRKHWRLYHPTVPLEELALVS---------------------- 367 (629)
T ss_pred HHhccc-cccceeecCCCCCCCCCchhhhhhhhheeccceeeEeecCCCcHhhhhhcc----------------------
Confidence 346642 478999999987 58999999999999999999999999988643 44211
Q ss_pred CCcccccccccCCCCCccccccccccCCCccCCCccEEEEEcCCCEEeeC-cCcceee
Q 021159 240 EPVRYVPWCSVNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLL-IWFRKAV 296 (316)
Q Consensus 240 ~~~~~~~~s~vd~~~~~~~~~pd~~~fP~~~~~~~~~~~~L~pGD~LfiP-gWwH~vv 296 (316)
.-|. ..-|+ +.+.++.+|+|||+||+| |..||+.
T Consensus 368 ---------S~Nf------~eedl--------gePV~e~vle~GDllYfPRG~IHQA~ 402 (629)
T KOG3706|consen 368 ---------SDNF------TEEDL--------GEPVHEFVLEPGDLLYFPRGTIHQAD 402 (629)
T ss_pred ---------CCCC------ChhHh--------CCchHHhhcCCCcEEEecCcceeecc
Confidence 0011 11122 256789999999999999 9999954
No 9
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=98.89 E-value=2.5e-10 Score=90.89 Aligned_cols=110 Identities=20% Similarity=0.223 Sum_probs=62.3
Q ss_pred EEEeeCCCCCCCccccCCCcE---EEEEEeEEEEEEeCCCCCCCCcccccCCcccccccccCCcceeeeccCCccccccc
Q 021159 172 NLWIGNQLSETSFHKDHYENL---YTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWC 248 (316)
Q Consensus 172 ~lwiG~~gs~t~~H~D~~~n~---~~qv~G~Kr~~L~pP~~~~~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 248 (316)
++.||..+|.|++|.|..... +...-|.|.|.++||.+...+...-- ... .. ..+.. ..+.
T Consensus 1 ~~~ig~~~s~t~~H~e~~~~~sv~~~~~g~~k~W~~v~~~~~~~~~~~~~--~~~-------~~------~~~~~-~~~~ 64 (114)
T PF02373_consen 1 WLYIGMKGSYTPWHIEDNGLSSVNYHHFGGSKVWYIVPPEDADKFEKFLR--SKE-------SQ------NCPQF-LDHK 64 (114)
T ss_dssp EEEEE-TTEEEEEEE-GGG-EEEEEEEEESEEEEEEE-GGGHHHHHHHHH--HHH-------HH------HSTTG-GCTG
T ss_pred CEEEeCCCcCCCcEecCCCCceeeeeccCcceEeEEechhhhhhHHHHHh--hcc-------cc------ccccc-cccc
Confidence 578999999999999955433 35678899999999998765442110 000 00 00000 0111
Q ss_pred ccCCCCCccccccccccCCCccCCCccEEEEEcCCCEEeeC-cCcceeeecCCcchhhhccc
Q 021159 249 SVNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLL-IWFRKAVRNSEVNVVELMQA 309 (316)
Q Consensus 249 ~vd~~~~~~~~~pd~~~fP~~~~~~~~~~~~L~pGD~LfiP-gWwH~vv~~~~~~v~~~~~~ 309 (316)
. +. ..|+. +...+.+.++++++|||++||| ||||+ |-+.+.||.+..+|
T Consensus 65 ~-~~------~~p~~----l~~~gi~~~~~~Q~~Ge~V~i~pg~~H~-v~n~g~~i~~a~Nf 114 (114)
T PF02373_consen 65 N-IF------VSPEQ----LKKAGIPVYRFVQKPGEFVFIPPGAYHQ-VFNLGDNISEAVNF 114 (114)
T ss_dssp G-EE------EGHHH----HHHTTS--EEEEEETT-EEEE-TT-EEE-EEESSSEEEEEEEE
T ss_pred c-cc------cceee----eeccCcccccceECCCCEEEECCCceEE-EEeCCceEEEEecC
Confidence 0 00 11221 1112378899999999999999 99999 77888898876654
No 10
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=98.00 E-value=1.1e-05 Score=83.44 Aligned_cols=202 Identities=18% Similarity=0.214 Sum_probs=114.3
Q ss_pred HHHHHhhcCCCCEEEEcCCCCCCCcccc--CCCChhhHHHhcCCCCcEEEEeccCCCCCcccccCCCCCCcccccccccc
Q 021159 33 QFLRDYVSQNKPCIIKNVSLHHQWPAFS--LWPHPSYLSKTLSSSPPVSVHLSPNGRADSLVTLTHPRSGEISQCFASAH 110 (316)
Q Consensus 33 ~F~~~y~~~~~PvVi~g~~~~~~WpA~~--~Wt~~eyL~~~~G~~~~V~V~~~~~~~~d~~~~~~~~~~g~~~~~F~~~~ 110 (316)
+|.++-. .+.|++++.-.. .-.++- ..+. .--+...|..+.+.|..... + .
T Consensus 9 ef~~~~~-~~~p~~~~~~~~--lg~~~p~p~f~v-~dv~~~vg~~r~~~v~dv~~-------------q----------~ 61 (776)
T KOG1633|consen 9 EFLQDNG-LRVPILFRNKDG--LGMTLPSPDFTV-NDVKELVGSDRMIDVVDVNT-------------Q----------K 61 (776)
T ss_pred hhhhhcc-cccchhhccCCC--ccccCCCCCcch-hhhHHhhCCCccceeeeeec-------------c----------c
Confidence 4555443 456888864211 112221 3443 33445667665777653211 0 1
Q ss_pred eeeecHHHHHHHHhccCCCCccccc-ccc---ccccc--hhhhhhhccccc-chhhhHHhhCC-CCCeeEEEeeCCCCCC
Q 021159 111 VERLPFDEALQLVSNSKNGDVVAYL-QQQ---NDCFR--DEYSVLGSDCDE-HIAWATEALGC-YPEAVNLWIGNQLSET 182 (316)
Q Consensus 111 ~~~mt~~efl~~~~~~~~~~~~~Yl-~~~---~~~l~--~~~p~L~~D~~~-~~p~~~~~~~~-~~~~~~lwiG~~gs~t 182 (316)
.-.|++.+|++........+ +|= -+. +..|. .+-|.+..++.- +--|..+.... ......+.|+-.++.|
T Consensus 62 ~~km~~~~~~~yy~~~~~~R--~yNVisLEfS~Trl~~~V~~P~ivr~ldwV~n~wP~~~~~~~P~vqkyclmsv~~~Yt 139 (776)
T KOG1633|consen 62 DCKMTLKEFVKYYSSPQRKR--LYNVISLEFSDTRLSNLVESPEIVRKLDWVDNQWPDDLKMEYPKVQKYCLMSVKDSYT 139 (776)
T ss_pred cccccHHHHhhhhcCcchhh--hhheeccccCcchHHhcCCCchhhhhhhchhccCCchhcccccccccceeeecccccc
Confidence 35899999999998765432 331 111 11110 012334333210 00021222222 2245678899999999
Q ss_pred CccccCCCc--EEEEEEeEEEEEEeCCCCCCC-CcccccCCcccccccccCCcceeeeccCCcccccccccCCCCCcccc
Q 021159 183 SFHKDHYEN--LYTVVSGQKHFLLLPPTDVHR-MYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWCSVNPYPSPETR 259 (316)
Q Consensus 183 ~~H~D~~~n--~~~qv~G~Kr~~L~pP~~~~~-ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vd~~~~~~~~ 259 (316)
.+|.|.... ++-.+.|.|+++|++|..... +|.... +..+
T Consensus 140 dfhidfggtsvwyhil~G~K~f~lI~pt~~nl~~ye~w~-----------------------------~s~~-------- 182 (776)
T KOG1633|consen 140 DFHIDFGGTSVWYHILAGEKTFYLIPPTCENLELYECWE-----------------------------SSTP-------- 182 (776)
T ss_pred ccccCCCCcchhhhhhccccceeeeCCcccchhhhhhhh-----------------------------hccc--------
Confidence 999997654 467799999999999999876 443210 0111
Q ss_pred ccccccCCCccCCCccEEEEEcCCCEEeeC-cCcceeeecCCcchh
Q 021159 260 ESEMAKFPLYFNGPKPFECTVNAGEILYLL-IWFRKAVRNSEVNVV 304 (316)
Q Consensus 260 ~pd~~~fP~~~~~~~~~~~~L~pGD~LfiP-gWwH~vv~~~~~~v~ 304 (316)
-|...|+.-. ..++.|+|++|++|||| ||-|. |.....+++
T Consensus 183 -q~~~ffGd~V--dkC~~~~l~~g~T~~iPsGwIhA-V~Tp~d~l~ 224 (776)
T KOG1633|consen 183 -QDEIFFGDCV--DKCYKCILKQGQTLFIPSGWIHA-VLTPTDCLV 224 (776)
T ss_pred -ccccccCCcc--ceeEEEEeccCceEecccceeEe-eecCcchhe
Confidence 1122333221 67899999999999999 99999 555555543
No 11
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=97.84 E-value=4.4e-06 Score=77.19 Aligned_cols=95 Identities=18% Similarity=0.254 Sum_probs=65.7
Q ss_pred EeeCCCCCCCccccCCCcEEEEEEeEEEEEEeCCCCCCCCcccccCCcccccccccCCcceeeeccCCcccccccccCCC
Q 021159 174 WIGNQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWCSVNPY 253 (316)
Q Consensus 174 wiG~~gs~t~~H~D~~~n~~~qv~G~Kr~~L~pP~~~~~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vd~~ 253 (316)
-++.....|..|+|...|++.|+.|-||.++++|++ ++|-..+ .-|+ +..+ -..|+
T Consensus 179 TvpvEvg~~y~~~~w~q~l~t~~~g~~R~~~~~p~~--~~YlAqh--~lfd-----qi~e--------------lk~Di- 234 (355)
T KOG2132|consen 179 TVPVEVGSTYADEDWSQNLMTQIKGIKRCILFEPRE--CLYLAQH--HLFD-----QIPE--------------LKFDI- 234 (355)
T ss_pred eeeeecccccchhHHHhhhHHHhhhhhhhhcCCccc--cchhhhh--hhhc-----cchh--------------hhhcc-
Confidence 344555568999999999999999999999999993 3442211 0110 1111 12355
Q ss_pred CCccccccccccCCCccCC-CccEEEEEcCCCEEeeC-cCcceeee
Q 021159 254 PSPETRESEMAKFPLYFNG-PKPFECTVNAGEILYLL-IWFRKAVR 297 (316)
Q Consensus 254 ~~~~~~~pd~~~fP~~~~~-~~~~~~~L~pGD~LfiP-gWwH~vv~ 297 (316)
..||+.++|.|... +....++..+|++++|| .|||.++.
T Consensus 235 -----~iPDyc~~~~f~~~~v~~~~w~GpaGtV~pih~dp~hNi~~ 275 (355)
T KOG2132|consen 235 -----SIPDYCSFPNFENEVVDINAWIGPAGTVLPIHMDPWHNILS 275 (355)
T ss_pred -----CCCceeecCCCCccccceeEEeccCCceeccccccccceee
Confidence 67899999998763 44455555559999999 99999543
No 12
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=96.22 E-value=0.0034 Score=43.57 Aligned_cols=29 Identities=31% Similarity=0.461 Sum_probs=25.1
Q ss_pred eeEEEeeCCCCCCCccccCCC--cEEEEEEe
Q 021159 170 AVNLWIGNQLSETSFHKDHYE--NLYTVVSG 198 (316)
Q Consensus 170 ~~~lwiG~~gs~t~~H~D~~~--n~~~qv~G 198 (316)
..++|||+.+|.|++|+|.++ |++.++.|
T Consensus 27 ~~~~~~G~~~s~t~~H~d~~~~~n~~~~~~~ 57 (57)
T smart00558 27 VPYLYMGMAGSVTPWHIDDYDLVNYLHQGAG 57 (57)
T ss_pred cceEEEeCCCCccceeEcCCCeEEEEEecCC
Confidence 489999999999999999999 77776654
No 13
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=95.32 E-value=0.059 Score=47.45 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=21.6
Q ss_pred cEEEEEcCCCEEeeC-cCcceeeecCC
Q 021159 275 PFECTVNAGEILYLL-IWFRKAVRNSE 300 (316)
Q Consensus 275 ~~~~~L~pGD~LfiP-gWwH~vv~~~~ 300 (316)
..++.++|||++||| +|-|.+++..+
T Consensus 125 ~~v~~~~~Gd~iyVPp~~gH~t~N~Gd 151 (209)
T COG2140 125 ARVIAVRAGDVIYVPPGYGHYTINTGD 151 (209)
T ss_pred EEEEEecCCcEEEeCCCcceEeecCCC
Confidence 467889999999999 99999555544
No 14
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=94.30 E-value=0.042 Score=45.57 Aligned_cols=33 Identities=12% Similarity=0.167 Sum_probs=25.3
Q ss_pred CCCCCCCccccCCCcEEEEEEeEEEEEEeCCCC
Q 021159 177 NQLSETSFHKDHYENLYTVVSGQKHFLLLPPTD 209 (316)
Q Consensus 177 ~~gs~t~~H~D~~~n~~~qv~G~Kr~~L~pP~~ 209 (316)
.+|+....|+...+-++.+++|+=++.++.|..
T Consensus 42 ~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~ 74 (144)
T PF00190_consen 42 EPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGG 74 (144)
T ss_dssp ETTEEEEEEEESSEEEEEEEESEEEEEEEETTC
T ss_pred hcCCccceeEeeeeEEeeeeccceEEEEEecCC
Confidence 456888889884555788999999888876654
No 15
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=94.05 E-value=0.23 Score=42.03 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=27.8
Q ss_pred eeEEEeeCCCCCCCccccCCCcEEEEEEeEEEEEE
Q 021159 170 AVNLWIGNQLSETSFHKDHYENLYTVVSGQKHFLL 204 (316)
Q Consensus 170 ~~~lwiG~~gs~t~~H~D~~~n~~~qv~G~Kr~~L 204 (316)
..-+-+|.++..+.+|.+..+-++.|+.|.=.+.+
T Consensus 29 ~~v~~vgGpn~R~d~H~~~tdE~FyqleG~~~l~v 63 (159)
T TIGR03037 29 FMVTVVGGPNARTDFHDDPGEEFFYQLKGEMYLKV 63 (159)
T ss_pred EEEEEeCCCCCCcccccCCCceEEEEEcceEEEEE
Confidence 34455788889999999989999999999854433
No 16
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=94.02 E-value=0.2 Score=43.16 Aligned_cols=72 Identities=17% Similarity=0.226 Sum_probs=53.4
Q ss_pred eeEEEeeCCCCCCCccccCCCcEEEEEEeEEEEEEeCCCCCCCCcccccCCcccccccccCCcceeeeccCCcccccccc
Q 021159 170 AVNLWIGNQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWCS 249 (316)
Q Consensus 170 ~~~lwiG~~gs~t~~H~D~~~n~~~qv~G~Kr~~L~pP~~~~~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 249 (316)
..-+.+|.+|..+.+|+|+.+-++-|+.|.=++.+..
T Consensus 35 ~~VmvvgGpn~r~d~H~~~tdE~FyqleG~~~l~v~d------------------------------------------- 71 (177)
T PRK13264 35 FIVMVVGGPNARTDFHYDPGEEFFYQLEGDMYLKVQE------------------------------------------- 71 (177)
T ss_pred EEEEEEccCCcccccccCCCceEEEEECCeEEEEEEc-------------------------------------------
Confidence 3445578888999999999999999999985544411
Q ss_pred cCCCCCccccccccccCCCccCCCccEEEEEcCCCEEeeC-cCcceeeecCCcchhhhc
Q 021159 250 VNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLL-IWFRKAVRNSEVNVVELM 307 (316)
Q Consensus 250 vd~~~~~~~~~pd~~~fP~~~~~~~~~~~~L~pGD~LfiP-gWwH~vv~~~~~~v~~~~ 307 (316)
- .+..+++|++||+++|| +=-|.-++ .+.++.+.+
T Consensus 72 --~--------------------g~~~~v~L~eGd~fllP~gvpHsP~r-~~~tv~Lvi 107 (177)
T PRK13264 72 --D--------------------GKRRDVPIREGEMFLLPPHVPHSPQR-EAGSIGLVI 107 (177)
T ss_pred --C--------------------CceeeEEECCCCEEEeCCCCCcCCcc-CCCeEEEEE
Confidence 0 12357899999999999 99999555 555654444
No 17
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=91.48 E-value=0.75 Score=44.38 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=19.7
Q ss_pred cEEEEEcCCCEEeeC-cCcceeeecC
Q 021159 275 PFECTVNAGEILYLL-IWFRKAVRNS 299 (316)
Q Consensus 275 ~~~~~L~pGD~LfiP-gWwH~vv~~~ 299 (316)
..+..|+|||++||| |..|+ +.|.
T Consensus 288 ~~~~~l~~GD~~~iP~g~~H~-i~N~ 312 (367)
T TIGR03404 288 ARTFDYQAGDVGYVPRNMGHY-VENT 312 (367)
T ss_pred EEEEEECCCCEEEECCCCeEE-EEEC
Confidence 355679999999999 99999 5544
No 18
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=89.81 E-value=0.22 Score=43.21 Aligned_cols=29 Identities=7% Similarity=0.331 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCEEeeC-cCcceeeecCCcc
Q 021159 274 KPFECTVNAGEILYLL-IWFRKAVRNSEVN 302 (316)
Q Consensus 274 ~~~~~~L~pGD~LfiP-gWwH~vv~~~~~~ 302 (316)
..+-+...|||+++|| +|-|.+|+..+..
T Consensus 108 ~~~~v~~~~G~~v~IPp~yaH~tIN~g~~~ 137 (182)
T PF06560_consen 108 DVIAVEAKPGDVVYIPPGYAHRTINTGDEP 137 (182)
T ss_dssp -EEEEEE-TTEEEEE-TT-EEEEEE-SSS-
T ss_pred eEEEEEeCCCCEEEECCCceEEEEECCCCc
Confidence 4678899999999999 9999988776544
No 19
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=89.46 E-value=0.74 Score=32.51 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=19.2
Q ss_pred EEEEcCCCEEeeC-cCcceeeecC
Q 021159 277 ECTVNAGEILYLL-IWFRKAVRNS 299 (316)
Q Consensus 277 ~~~L~pGD~LfiP-gWwH~vv~~~ 299 (316)
...|+|||+++|| +=+|.+.+..
T Consensus 38 ~~~l~~Gd~~~i~~~~~H~~~n~~ 61 (71)
T PF07883_consen 38 RVELKPGDAIYIPPGVPHQVRNPG 61 (71)
T ss_dssp EEEEETTEEEEEETTSEEEEEEES
T ss_pred EeEccCCEEEEECCCCeEEEEECC
Confidence 6789999999999 9999944443
No 20
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=89.30 E-value=1.2 Score=37.29 Aligned_cols=69 Identities=20% Similarity=0.369 Sum_probs=38.9
Q ss_pred eEEEee--CCCCCCCccccCCCcEEEEEEeEEEEEEeCCCCCCCCcccccCCcccccccccCCcceeeeccCCccccccc
Q 021159 171 VNLWIG--NQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWC 248 (316)
Q Consensus 171 ~~lwiG--~~gs~t~~H~D~~~n~~~qv~G~Kr~~L~pP~~~~~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 248 (316)
..+|+- .+|+.||.|...++-.++++.|+=...|....
T Consensus 44 vEVwlQTfAPG~~TPiHRHsCEEVFvVLkG~GTl~l~~~~---------------------------------------- 83 (167)
T PF02041_consen 44 VEVWLQTFAPGSATPIHRHSCEEVFVVLKGSGTLYLASSH---------------------------------------- 83 (167)
T ss_dssp EEEEEEEE-TT-B--EEEESS-EEEEEEE--EEEEE--SS----------------------------------------
T ss_pred eeEEeeeecCCCCCCCccccccEEEEEEecceEEEEeccc----------------------------------------
Confidence 455543 46799999999999999999999887774110
Q ss_pred ccCCCCCccccccccccCCCccCCCccEEEEEcCCCEEeeC-cCcceeeecC
Q 021159 249 SVNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLL-IWFRKAVRNS 299 (316)
Q Consensus 249 ~vd~~~~~~~~~pd~~~fP~~~~~~~~~~~~L~pGD~LfiP-gWwH~vv~~~ 299 (316)
.+|| -.+.++...|+++++|| +=-||+.++.
T Consensus 84 ---------------~~~p-----G~pqef~~~pnSTf~IPvn~~HQv~NT~ 115 (167)
T PF02041_consen 84 ---------------EKYP-----GKPQEFPIFPNSTFHIPVNDAHQVWNTN 115 (167)
T ss_dssp ---------------SSS-------S-EEEEE-TTEEEEE-TT--EEEE---
T ss_pred ---------------ccCC-----CCceEEEecCCCeEEeCCCCcceeecCC
Confidence 1232 45688999999999999 9999954443
No 21
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=88.85 E-value=0.32 Score=38.95 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=19.9
Q ss_pred EEEEEcCCCEEeeC-cCcceeeecC
Q 021159 276 FECTVNAGEILYLL-IWFRKAVRNS 299 (316)
Q Consensus 276 ~~~~L~pGD~LfiP-gWwH~vv~~~ 299 (316)
..++..|||++||| |-.|+-.++.
T Consensus 88 ~ha~~~pGDf~YiPpgVPHqp~N~S 112 (142)
T COG4101 88 EHAEVGPGDFFYIPPGVPHQPANLS 112 (142)
T ss_pred eeEEecCCCeEEcCCCCCCcccccC
Confidence 57889999999999 9999944443
No 22
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=88.71 E-value=0.86 Score=43.35 Aligned_cols=27 Identities=11% Similarity=0.084 Sum_probs=21.3
Q ss_pred cEEEEEcCCCEEeeC-cCcceeeecCCcc
Q 021159 275 PFECTVNAGEILYLL-IWFRKAVRNSEVN 302 (316)
Q Consensus 275 ~~~~~L~pGD~LfiP-gWwH~vv~~~~~~ 302 (316)
...+..++||++.+| ++||. -.|.+..
T Consensus 119 g~~~~~~~gD~~~tP~w~wH~-H~n~~d~ 146 (335)
T TIGR02272 119 GERTTMHPGDFIITPSWTWHD-HGNPGDE 146 (335)
T ss_pred CEEEeeeCCCEEEeCCCeeEe-cccCCCC
Confidence 457889999999999 99998 5555433
No 23
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=88.24 E-value=2.2 Score=34.38 Aligned_cols=35 Identities=20% Similarity=0.130 Sum_probs=25.0
Q ss_pred eeEEEeeCCCCCCCccccC-CCcEEEEEEeEEEEEE
Q 021159 170 AVNLWIGNQLSETSFHKDH-YENLYTVVSGQKHFLL 204 (316)
Q Consensus 170 ~~~lwiG~~gs~t~~H~D~-~~n~~~qv~G~Kr~~L 204 (316)
....+-..+|..++.|..+ .+-.+..+.|+=++.+
T Consensus 44 ~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~ 79 (131)
T COG1917 44 SVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQL 79 (131)
T ss_pred EEEEEEECCCcccccccCCCcceEEEEEecEEEEEe
Confidence 3456667788999999987 5566777888754443
No 24
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=87.50 E-value=0.61 Score=40.83 Aligned_cols=25 Identities=16% Similarity=0.445 Sum_probs=21.1
Q ss_pred cEEEEEcCCCEEeeC-cCcceeeecC
Q 021159 275 PFECTVNAGEILYLL-IWFRKAVRNS 299 (316)
Q Consensus 275 ~~~~~L~pGD~LfiP-gWwH~vv~~~ 299 (316)
.....++|||++||| +|-|.+++..
T Consensus 119 ~~~~~v~pGd~v~IPpg~~H~~iN~G 144 (191)
T PRK04190 119 ARWIEMEPGTVVYVPPYWAHRSVNTG 144 (191)
T ss_pred EEEEEECCCCEEEECCCCcEEeEECC
Confidence 577899999999999 9999955443
No 25
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=87.25 E-value=3 Score=34.44 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCEEeeC-cCcceeeec
Q 021159 274 KPFECTVNAGEILYLL-IWFRKAVRN 298 (316)
Q Consensus 274 ~~~~~~L~pGD~LfiP-gWwH~vv~~ 298 (316)
...+..+++||+++|| +.+|...+.
T Consensus 73 ~~~~~~l~~GD~~~ip~g~~H~~~n~ 98 (146)
T smart00835 73 KVYDARLREGDVFVVPQGHPHFQVNS 98 (146)
T ss_pred eEEEEEecCCCEEEECCCCEEEEEcC
Confidence 3478899999999999 999994443
No 26
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=87.17 E-value=2.9 Score=40.41 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=23.1
Q ss_pred eEEEeeCCCCCCCccccCCCcEEEEEEeEEEEEEe
Q 021159 171 VNLWIGNQLSETSFHKDHYENLYTVVSGQKHFLLL 205 (316)
Q Consensus 171 ~~lwiG~~gs~t~~H~D~~~n~~~qv~G~Kr~~L~ 205 (316)
..+-+.+. ...++|.....-+..++.|+=++.+.
T Consensus 70 ~~~~l~pG-~~~~~HwH~~~E~~yVl~G~~~v~~~ 103 (367)
T TIGR03404 70 VNMRLEPG-AIRELHWHKEAEWAYVLYGSCRITAV 103 (367)
T ss_pred eEEEEcCC-CCCCcccCCCceEEEEEeeEEEEEEE
Confidence 34455544 45678877666688999998877663
No 27
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=86.23 E-value=0.74 Score=37.35 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=21.6
Q ss_pred EEEEEcCCCEEeeC-cCcceeeecCCc
Q 021159 276 FECTVNAGEILYLL-IWFRKAVRNSEV 301 (316)
Q Consensus 276 ~~~~L~pGD~LfiP-gWwH~vv~~~~~ 301 (316)
-++.|++||++||| |=.|. +.|...
T Consensus 75 ~~~~v~~gd~~~iP~g~~H~-~~N~G~ 100 (127)
T COG0662 75 EEVEVKAGDSVYIPAGTPHR-VRNTGK 100 (127)
T ss_pred EEEEecCCCEEEECCCCcEE-EEcCCC
Confidence 57889999999999 99999 767654
No 28
>PLN02288 mannose-6-phosphate isomerase
Probab=84.17 E-value=0.61 Score=45.41 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=27.8
Q ss_pred EEEEcCCCEEeeC-cCcceeeecCCcchhhhc
Q 021159 277 ECTVNAGEILYLL-IWFRKAVRNSEVNVVELM 307 (316)
Q Consensus 277 ~~~L~pGD~LfiP-gWwH~vv~~~~~~v~~~~ 307 (316)
.+.|+|||++|+| |=.|..++...+-||++.
T Consensus 252 ~v~L~PGeaifl~ag~~HAYl~G~~vE~MA~S 283 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAYLSGECIECMATS 283 (394)
T ss_pred eEecCCCCEEEecCCCCceecCCCeEEeeecC
Confidence 7899999999999 999998888888888664
No 29
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=83.08 E-value=0.45 Score=49.67 Aligned_cols=44 Identities=23% Similarity=0.384 Sum_probs=33.7
Q ss_pred HHHHHHhhcCCCCEEEEcCCCCCCCccccCCCChhhHHHhcCCCCcEEEE
Q 021159 32 LQFLRDYVSQNKPCIIKNVSLHHQWPAFSLWPHPSYLSKTLSSSPPVSVH 81 (316)
Q Consensus 32 ~~F~~~y~~~~~PvVi~g~~~~~~WpA~~~Wt~~eyL~~~~G~~~~V~V~ 81 (316)
.-| +++++.++|||++|+.. .. ....|-. +.|...+|++ .+.+.
T Consensus 531 ~~F-QEhWkqGqPViVs~V~~--~l-~g~lW~P-~a~~~~~g~q-~~~l~ 574 (889)
T KOG1356|consen 531 KHF-QEHWKQGQPVIVSGVHK--KL-NGLLWKP-EALSRAFGDQ-VVDLS 574 (889)
T ss_pred HHH-HHHHhcCCcEEehHhhh--hc-cccccch-HHHHHHhccc-hhhhh
Confidence 345 55889999999999887 43 3457987 8899889998 66654
No 30
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=82.94 E-value=0.76 Score=33.63 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=14.6
Q ss_pred ccEEEEEcCCCEEeeC-cC
Q 021159 274 KPFECTVNAGEILYLL-IW 291 (316)
Q Consensus 274 ~~~~~~L~pGD~LfiP-gW 291 (316)
..-..+++|||++|+| ||
T Consensus 42 ~G~~~~~~aGD~~~~p~G~ 60 (74)
T PF05899_consen 42 DGETVTFKAGDAFFLPKGW 60 (74)
T ss_dssp TTEEEEEETTEEEEE-TTE
T ss_pred CCCEEEEcCCcEEEECCCC
Confidence 3456899999999999 98
No 31
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=82.72 E-value=0.7 Score=48.27 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=26.8
Q ss_pred CCccEEEEEcCCCEEeeC-cCcceeeecCCcch
Q 021159 272 GPKPFECTVNAGEILYLL-IWFRKAVRNSEVNV 303 (316)
Q Consensus 272 ~~~~~~~~L~pGD~LfiP-gWwH~vv~~~~~~v 303 (316)
+..++++++..||++||| |-.|| |+|+--.|
T Consensus 795 GVe~WtfvQ~LGdAVfIPAGaPHQ-VrNLkSCi 826 (889)
T KOG1356|consen 795 GVEPWTFVQFLGDAVFIPAGAPHQ-VRNLKSCI 826 (889)
T ss_pred CCCccchhhcccceEEecCCCcHH-hhhhhhHH
Confidence 488999999999999999 99999 88874333
No 32
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=81.96 E-value=4.2 Score=35.09 Aligned_cols=37 Identities=14% Similarity=0.019 Sum_probs=26.0
Q ss_pred CeeEEEeeCCCCCCCccccC---CCcEEEEEEeEEEEEEe
Q 021159 169 EAVNLWIGNQLSETSFHKDH---YENLYTVVSGQKHFLLL 205 (316)
Q Consensus 169 ~~~~lwiG~~gs~t~~H~D~---~~n~~~qv~G~Kr~~L~ 205 (316)
...|+-++.+|+...+|+.. ..=++..++|+=.-+++
T Consensus 44 ~Q~n~S~S~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~V 83 (176)
T TIGR01221 44 VQDNHSKSYKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAV 83 (176)
T ss_pred ceeEEEEecCCEEEEEEECCCCCCceEEEEccCCEEEEEE
Confidence 35677778889999999973 23466777777655543
No 33
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=80.34 E-value=1.1 Score=43.52 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=25.2
Q ss_pred EEEEEcCCCEEeeC-cCcceeeecCCcchhhhc
Q 021159 276 FECTVNAGEILYLL-IWFRKAVRNSEVNVVELM 307 (316)
Q Consensus 276 ~~~~L~pGD~LfiP-gWwH~vv~~~~~~v~~~~ 307 (316)
-.+.|+|||++||| |=.|...+..-+-||++.
T Consensus 237 N~v~l~pGeaifipAg~~HAyl~G~~iEima~S 269 (389)
T PRK15131 237 NVVKLNPGEAMFLFAETPHAYLQGVALEVMANS 269 (389)
T ss_pred eEEEeCCCCEEEeCCCCCeEEcCCeEEEEEecC
Confidence 47899999999999 999996665555556543
No 34
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=79.86 E-value=7.9 Score=32.38 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=44.1
Q ss_pred eeEEEeeCCCCCCCccccCCCcEEEEEEeEEEEEEeCCCCCCCCcccccCCcccccccccCCcceeeeccCCcccccccc
Q 021159 170 AVNLWIGNQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWCS 249 (316)
Q Consensus 170 ~~~lwiG~~gs~t~~H~D~~~n~~~qv~G~Kr~~L~pP~~~~~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 249 (316)
..-+.+|.+.+.+-.|+|..+-++-|+.|.=...+...
T Consensus 34 f~VmvVGGPN~R~DyHine~eE~FyQ~kG~m~Lkv~e~------------------------------------------ 71 (151)
T PF06052_consen 34 FIVMVVGGPNQRTDYHINETEEFFYQLKGDMCLKVVED------------------------------------------ 71 (151)
T ss_dssp EEEEEEESSB--SSEEE-SS-EEEEEEES-EEEEEEET------------------------------------------
T ss_pred eEEEEEcCCCCCCccccCCcceEEEEEeCcEEEEEEeC------------------------------------------
Confidence 55677899999999999999999999999654333110
Q ss_pred cCCCCCccccccccccCCCccCCCccEEEEEcCCCEEeeC-cCcceeeecCCcchhh
Q 021159 250 VNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLL-IWFRKAVRNSEVNVVE 305 (316)
Q Consensus 250 vd~~~~~~~~~pd~~~fP~~~~~~~~~~~~L~pGD~LfiP-gWwH~vv~~~~~~v~~ 305 (316)
...-++.+++||+-++| +-.|.-++. +.||.+
T Consensus 72 -----------------------g~~kdi~I~EGe~fLLP~~vpHsP~R~-~~tiGL 104 (151)
T PF06052_consen 72 -----------------------GKFKDIPIREGEMFLLPANVPHSPQRP-ADTIGL 104 (151)
T ss_dssp -----------------------TEEEEEEE-TTEEEEE-TT--EEEEE--TT-EEE
T ss_pred -----------------------CceEEEEeCCCcEEecCCCCCCCCcCC-CCcEEE
Confidence 22347899999999999 999997765 556543
No 35
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=75.59 E-value=2.1 Score=34.36 Aligned_cols=19 Identities=16% Similarity=0.051 Sum_probs=16.6
Q ss_pred ccEEEEEcCCCEEeeC-cCc
Q 021159 274 KPFECTVNAGEILYLL-IWF 292 (316)
Q Consensus 274 ~~~~~~L~pGD~LfiP-gWw 292 (316)
..-.+.++|||++|+| ||.
T Consensus 80 ~Ge~v~~~aGD~~~~~~G~~ 99 (116)
T COG3450 80 GGEPVEVRAGDSFVFPAGFK 99 (116)
T ss_pred CCeEEEEcCCCEEEECCCCe
Confidence 3567889999999999 996
No 36
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=75.16 E-value=8.8 Score=33.09 Aligned_cols=76 Identities=12% Similarity=0.041 Sum_probs=49.0
Q ss_pred CeeEEEeeCCCCCCCccccCCC----cEEEEEEeEEEEEEeCCCCCCCCcccccCCcccccccccCCcceeeeccCCccc
Q 021159 169 EAVNLWIGNQLSETSFHKDHYE----NLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRY 244 (316)
Q Consensus 169 ~~~~lwiG~~gs~t~~H~D~~~----n~~~qv~G~Kr~~L~pP~~~~~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (316)
...++-.+.+|+.-.+|+.... =++..++|+=--+++
T Consensus 43 ~q~n~S~s~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~v--------------------------------------- 83 (176)
T PF00908_consen 43 VQDNISVSKKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAV--------------------------------------- 83 (176)
T ss_dssp EEEEEEEEETTBEEEEEEESTTT-EEEEEEEEESEEEEEEE---------------------------------------
T ss_pred CceEEEEccccEEEEEEEecCCCCCCcEEEEecCeEEEEEE---------------------------------------
Confidence 3567888888999999998543 356777776543332
Q ss_pred ccccccCCCCCccccccccccCCCccCCCccEEEEEcCCC--EEeeC-cCcceeeecCCcc
Q 021159 245 VPWCSVNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGE--ILYLL-IWFRKAVRNSEVN 302 (316)
Q Consensus 245 ~~~s~vd~~~~~~~~~pd~~~fP~~~~~~~~~~~~L~pGD--~LfiP-gWwH~vv~~~~~~ 302 (316)
|+ ...-|.| -+...++|.+++ +|||| |-+|-..+..+.+
T Consensus 84 ------Dl----------R~~SpTf---g~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a 125 (176)
T PF00908_consen 84 ------DL----------RKGSPTF---GKWVSVELSAENPRQLYIPPGVAHGFQTLEDDA 125 (176)
T ss_dssp ------E-----------BTTSTTT---T-EEEEEEETTT--EEEE-TTEEEEEEESSSEE
T ss_pred ------EC----------CCCCCCC---CEEEEEEeCccccCEEEeCCcceeeEEeccCce
Confidence 22 1222343 346788888876 79999 9999955555444
No 37
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=74.65 E-value=2.8 Score=33.99 Aligned_cols=27 Identities=15% Similarity=-0.060 Sum_probs=21.6
Q ss_pred cEEEEEcCCCEEeeC-cCcceeeecCCcc
Q 021159 275 PFECTVNAGEILYLL-IWFRKAVRNSEVN 302 (316)
Q Consensus 275 ~~~~~L~pGD~LfiP-gWwH~vv~~~~~~ 302 (316)
..+..|+|||++|+| +=.|. ..|.+..
T Consensus 74 g~~~~L~aGD~i~~~~~~~H~-~~N~e~~ 101 (125)
T PRK13290 74 GEVHPIRPGTMYALDKHDRHY-LRAGEDM 101 (125)
T ss_pred CEEEEeCCCeEEEECCCCcEE-EEcCCCE
Confidence 356889999999999 99999 5554443
No 38
>KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism]
Probab=74.29 E-value=3.4 Score=39.39 Aligned_cols=40 Identities=25% Similarity=0.594 Sum_probs=28.7
Q ss_pred ccccccc--CCCccCCCccEEEEEcCCCEEeeC-cCcceeeecCC
Q 021159 259 RESEMAK--FPLYFNGPKPFECTVNAGEILYLL-IWFRKAVRNSE 300 (316)
Q Consensus 259 ~~pd~~~--fP~~~~~~~~~~~~L~pGD~LfiP-gWwH~vv~~~~ 300 (316)
++.|.++ +-.++. .-.+.++++|||++|+| -|.|. |++.+
T Consensus 343 e~~d~~~~~l~~lA~-~~~l~v~~~~~~~~~l~~~~~~~-~~~~~ 385 (437)
T KOG2508|consen 343 KNVDVDKDELSALAG-TVPLVVDLEPGDMLYLPASWFHE-VTSSS 385 (437)
T ss_pred cccccchhhcccccc-ceeEEEecccCceeeechhheee-eeccc
Confidence 4444444 433443 66789999999999999 99999 55543
No 39
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=71.02 E-value=2.7 Score=39.59 Aligned_cols=31 Identities=13% Similarity=0.131 Sum_probs=23.5
Q ss_pred EEEEEcCCCEEeeC-cCcceeeecCCcchhhh
Q 021159 276 FECTVNAGEILYLL-IWFRKAVRNSEVNVVEL 306 (316)
Q Consensus 276 ~~~~L~pGD~LfiP-gWwH~vv~~~~~~v~~~ 306 (316)
-.+.|+|||++|+| |-.|......-.-||.|
T Consensus 158 n~v~lkpGe~~fl~Agt~HA~~~G~~lEvmqn 189 (312)
T COG1482 158 NRVKLKPGEAFFLPAGTPHAYLKGLVLEVMQN 189 (312)
T ss_pred cEEecCCCCEEEecCCCceeeccceEEEEEec
Confidence 47899999999999 99999655543444444
No 40
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=69.72 E-value=4.6 Score=34.29 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=26.9
Q ss_pred CccEEEEEcCCCEEeeC-cCcceeeecCCcchhh
Q 021159 273 PKPFECTVNAGEILYLL-IWFRKAVRNSEVNVVE 305 (316)
Q Consensus 273 ~~~~~~~L~pGD~LfiP-gWwH~vv~~~~~~v~~ 305 (316)
...+.+-++.||+|+|| |-+|. -+..+-|.+-
T Consensus 113 d~WIRi~vekGDlivlPaGiyHR-FTtt~~n~vk 145 (179)
T KOG2107|consen 113 DQWIRIFVEKGDLIVLPAGIYHR-FTTTPSNYVK 145 (179)
T ss_pred CCEEEEEEecCCEEEecCcceee-eecCchHHHH
Confidence 56789999999999999 99999 7777666543
No 41
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=68.87 E-value=3.8 Score=34.50 Aligned_cols=17 Identities=12% Similarity=0.245 Sum_probs=12.6
Q ss_pred cEEEEEcCCCEEeeC-cC
Q 021159 275 PFECTVNAGEILYLL-IW 291 (316)
Q Consensus 275 ~~~~~L~pGD~LfiP-gW 291 (316)
..+.+.+|||+|||| |=
T Consensus 112 G~~~~A~~GDvi~iPkGs 129 (152)
T PF06249_consen 112 GQTVTAKPGDVIFIPKGS 129 (152)
T ss_dssp TEEEEEETT-EEEE-TT-
T ss_pred CEEEEEcCCcEEEECCCC
Confidence 578899999999999 83
No 42
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=68.25 E-value=19 Score=30.99 Aligned_cols=35 Identities=23% Similarity=0.116 Sum_probs=25.4
Q ss_pred eeEEEeeCCCCCCCccccCCC-c-EEEEEEeEEEEEE
Q 021159 170 AVNLWIGNQLSETSFHKDHYE-N-LYTVVSGQKHFLL 204 (316)
Q Consensus 170 ~~~lwiG~~gs~t~~H~D~~~-n-~~~qv~G~Kr~~L 204 (316)
..|+-++.+|+.-.+||.... + +++.++|+=...+
T Consensus 46 Q~n~S~S~~GvlRGlHyq~~~q~klv~~v~G~v~dv~ 82 (173)
T COG1898 46 QDNHSFSYPGVLRGLHYQHKPQGKLVRVVSGKVFDVA 82 (173)
T ss_pred cceEEEecCCeeEEEEcccCCCCeEEEEecCeEEEEE
Confidence 567778889999999999655 4 4566677655444
No 43
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=66.83 E-value=4.6 Score=36.30 Aligned_cols=22 Identities=9% Similarity=0.082 Sum_probs=18.9
Q ss_pred CccEEEEEcCCCEEeeC-cCcce
Q 021159 273 PKPFECTVNAGEILYLL-IWFRK 294 (316)
Q Consensus 273 ~~~~~~~L~pGD~LfiP-gWwH~ 294 (316)
...-+.+++|||+|||| |=.|+
T Consensus 190 IdG~t~~l~pGDvlfIPkGs~~h 212 (233)
T PRK15457 190 HEGETMIAKAGDVMFIPKGSSIE 212 (233)
T ss_pred ECCEEEEeCCCcEEEECCCCeEE
Confidence 34678899999999999 99966
No 44
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=66.35 E-value=2.3 Score=41.11 Aligned_cols=31 Identities=13% Similarity=0.060 Sum_probs=24.4
Q ss_pred EEEEcCCCEEeeC-cCcceeeecCCcchhhhc
Q 021159 277 ECTVNAGEILYLL-IWFRKAVRNSEVNVVELM 307 (316)
Q Consensus 277 ~~~L~pGD~LfiP-gWwH~vv~~~~~~v~~~~ 307 (316)
.+.|+|||++|+| +=.|..++-..+-+|++.
T Consensus 251 ~v~L~pGeaifl~a~~~HAYl~G~~vE~MA~S 282 (373)
T PF01238_consen 251 YVELQPGEAIFLPAGEPHAYLSGDCVECMANS 282 (373)
T ss_dssp EEEE-TT-EEEEHTTHHEEEEEEEEEEEEESS
T ss_pred EEEecCCceEEecCCCccccccccceeccccc
Confidence 5699999999999 999998887777777543
No 45
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=63.69 E-value=5.3 Score=32.59 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=17.8
Q ss_pred EEEe--eCCCCCCCccccCC-CcEEEEEEeEEEEEE
Q 021159 172 NLWI--GNQLSETSFHKDHY-ENLYTVVSGQKHFLL 204 (316)
Q Consensus 172 ~lwi--G~~gs~t~~H~D~~-~n~~~qv~G~Kr~~L 204 (316)
.+|+ .++|....+|.... .-+++.|+|+=++.+
T Consensus 34 vy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~ 69 (131)
T PF05523_consen 34 VYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVL 69 (131)
T ss_dssp EEEEES--SS--EEEEEESS--EEEEEEES-EEEEE
T ss_pred EEEEEcCCCCCcccccccccccEEEEEEeCEEEEEE
Confidence 4444 34555578887743 446788888877663
No 46
>PLN00212 glutelin; Provisional
Probab=62.25 E-value=24 Score=35.43 Aligned_cols=21 Identities=14% Similarity=0.271 Sum_probs=18.8
Q ss_pred ccEEEEEcCCCEEeeC-cCcce
Q 021159 274 KPFECTVNAGEILYLL-IWFRK 294 (316)
Q Consensus 274 ~~~~~~L~pGD~LfiP-gWwH~ 294 (316)
+.+..+|++||++.|| +..|.
T Consensus 391 ~vf~~~L~~GdvfVVPqg~~v~ 412 (493)
T PLN00212 391 TVFNGVLRPGQLLIIPQHYAVL 412 (493)
T ss_pred EEEEEEEcCCCEEEECCCCeEE
Confidence 3478899999999999 99996
No 47
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=61.78 E-value=6.9 Score=33.11 Aligned_cols=26 Identities=8% Similarity=0.097 Sum_probs=18.1
Q ss_pred ccEEEEEcCCCEEeeC-cCcceeeecCC
Q 021159 274 KPFECTVNAGEILYLL-IWFRKAVRNSE 300 (316)
Q Consensus 274 ~~~~~~L~pGD~LfiP-gWwH~vv~~~~ 300 (316)
....+.+++||.|.|| |-+|. -+..+
T Consensus 113 ~wiri~~e~GDli~vP~g~~Hr-F~~~~ 139 (157)
T PF03079_consen 113 VWIRILCEKGDLIVVPAGTYHR-FTLGE 139 (157)
T ss_dssp EEEEEEEETTCEEEE-TT--EE-EEEST
T ss_pred EEEEEEEcCCCEEecCCCCcee-EEcCC
Confidence 3456999999999999 99999 54443
No 48
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=60.64 E-value=5.3 Score=33.81 Aligned_cols=17 Identities=24% Similarity=0.726 Sum_probs=14.6
Q ss_pred EEEEEcCCCEEeeC-cCc
Q 021159 276 FECTVNAGEILYLL-IWF 292 (316)
Q Consensus 276 ~~~~L~pGD~LfiP-gWw 292 (316)
....|+|||.|||| .|+
T Consensus 148 ~n~~L~~gD~I~Vp~~~f 165 (165)
T TIGR03027 148 ANVELKPGDVLIIPESWF 165 (165)
T ss_pred CCceeCCCCEEEEecccC
Confidence 45779999999999 875
No 49
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=59.41 E-value=4.3 Score=37.95 Aligned_cols=20 Identities=10% Similarity=0.086 Sum_probs=18.1
Q ss_pred EEEEEcCCCEEeeC-cCccee
Q 021159 276 FECTVNAGEILYLL-IWFRKA 295 (316)
Q Consensus 276 ~~~~L~pGD~LfiP-gWwH~v 295 (316)
-.+.++|||++||| |-.|..
T Consensus 151 n~v~v~~Gd~i~ipaGt~HA~ 171 (302)
T TIGR00218 151 NRIKLKPGDFFYVPSGTPHAY 171 (302)
T ss_pred cccccCCCCEEEeCCCCcccc
Confidence 47889999999999 999994
No 50
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=59.24 E-value=9.3 Score=32.08 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=25.7
Q ss_pred cEEEEEcCCCEEeeC-cCcceeeecCCcc--hhhhcccCc
Q 021159 275 PFECTVNAGEILYLL-IWFRKAVRNSEVN--VVELMQAKH 311 (316)
Q Consensus 275 ~~~~~L~pGD~LfiP-gWwH~vv~~~~~~--v~~~~~~~~ 311 (316)
.-+..|.+||.+||| |=.|. +.|.+.. .++..|+-+
T Consensus 101 ~~~~~~~~g~sv~Ip~g~~H~-i~n~g~~~L~~IEVq~G~ 139 (151)
T PF01050_consen 101 DEEFTLKEGDSVYIPRGAKHR-IENPGKTPLEIIEVQTGE 139 (151)
T ss_pred CEEEEEcCCCEEEECCCCEEE-EECCCCcCcEEEEEecCC
Confidence 356779999999999 99999 7775322 455555433
No 51
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=58.94 E-value=6.5 Score=32.99 Aligned_cols=16 Identities=13% Similarity=0.252 Sum_probs=13.4
Q ss_pred EEEEEcCCCEEeeC-cC
Q 021159 276 FECTVNAGEILYLL-IW 291 (316)
Q Consensus 276 ~~~~L~pGD~LfiP-gW 291 (316)
-+++-+|||++||| |=
T Consensus 136 ~tv~a~aGDvifiPKgs 152 (176)
T COG4766 136 RTVIAGAGDVIFIPKGS 152 (176)
T ss_pred CeEecCCCcEEEecCCC
Confidence 45677899999999 84
No 52
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=52.95 E-value=28 Score=31.15 Aligned_cols=84 Identities=17% Similarity=0.088 Sum_probs=42.0
Q ss_pred CeeEEEeeCCCCCCCccccCC--CcEEEEEEeEEEEEEeCCCCCCCCcccccCCcccccccccCCcceeeeccCCccccc
Q 021159 169 EAVNLWIGNQLSETSFHKDHY--ENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVP 246 (316)
Q Consensus 169 ~~~~lwiG~~gs~t~~H~D~~--~n~~~qv~G~Kr~~L~pP~~~~~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (316)
..-.+.|...|..||+|+... +.+..-=-|.=.+.|+.-.....+-. ...+.|
T Consensus 87 YAEKim~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~---------------~~~v~V---------- 141 (225)
T PF07385_consen 87 YAEKIMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDA---------------DTDVTV---------- 141 (225)
T ss_dssp EEEEEEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB----------------SS-EEE----------
T ss_pred chhhheeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCcccc---------------CCCeEE----------
Confidence 355778888899999999853 33444334455556654432211110 011122
Q ss_pred ccccCCCCCccccccccccCCCccCCCccEEEEEcCCCEEeeC-cCcce
Q 021159 247 WCSVNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLL-IWFRK 294 (316)
Q Consensus 247 ~s~vd~~~~~~~~~pd~~~fP~~~~~~~~~~~~L~pGD~LfiP-gWwH~ 294 (316)
.+|= ....+ +..-+++|.||+-|-|| +-||.
T Consensus 142 --~~DG---------~~~t~------~aG~~l~L~PGESiTL~Pg~yH~ 173 (225)
T PF07385_consen 142 --PVDG---------IRRTV------PAGTQLRLNPGESITLPPGIYHW 173 (225)
T ss_dssp --EETT---------EEEEE-------TT-EEEE-TT-EEEE-TTEEEE
T ss_pred --ecCC---------cEEEe------cCCceEEeCCCCeEeeCCCCeee
Confidence 1121 01222 45678999999999999 99998
No 53
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=49.48 E-value=36 Score=31.76 Aligned_cols=38 Identities=11% Similarity=0.173 Sum_probs=28.6
Q ss_pred cccccccCCCccCCCccEEEEEcCCCEEeeC-cCcceeeecCC
Q 021159 259 RESEMAKFPLYFNGPKPFECTVNAGEILYLL-IWFRKAVRNSE 300 (316)
Q Consensus 259 ~~pd~~~fP~~~~~~~~~~~~L~pGD~LfiP-gWwH~vv~~~~ 300 (316)
+.||-+.|++ .-...+.|++||+|+.= .-||.+-.|..
T Consensus 180 ~r~d~~~y~~----~~~~pv~lekGDallF~~~L~HaA~aNrT 218 (299)
T COG5285 180 ERPDHETYLE----RNAVPVELEKGDALLFNGSLWHAAGANRT 218 (299)
T ss_pred CCCCccchhh----hcceeeeecCCCEEEEcchhhhhhhcCCC
Confidence 5566556643 33789999999999999 99999666654
No 54
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=46.48 E-value=18 Score=31.04 Aligned_cols=24 Identities=13% Similarity=-0.003 Sum_probs=20.3
Q ss_pred cEEEEEcCCCEEeeC-cCcceeeecC
Q 021159 275 PFECTVNAGEILYLL-IWFRKAVRNS 299 (316)
Q Consensus 275 ~~~~~L~pGD~LfiP-gWwH~vv~~~ 299 (316)
.-+..|++||++|+| +=.|. ..+.
T Consensus 145 ~~~~~l~~Gd~~~~~~~~~H~-~~n~ 169 (185)
T PRK09943 145 GQDYHLVAGQSYAINTGIPHS-FSNT 169 (185)
T ss_pred CEEEEecCCCEEEEcCCCCee-eeCC
Confidence 467789999999999 99999 5554
No 55
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=46.38 E-value=11 Score=34.00 Aligned_cols=14 Identities=21% Similarity=0.565 Sum_probs=12.7
Q ss_pred EEcCCCEEeeC-cCc
Q 021159 279 TVNAGEILYLL-IWF 292 (316)
Q Consensus 279 ~L~pGD~LfiP-gWw 292 (316)
.|+|||++||| .|+
T Consensus 225 ~l~~gDii~V~~s~~ 239 (239)
T TIGR03028 225 LVQPDDVIYVRESLF 239 (239)
T ss_pred ccCCCCEEEEeCccC
Confidence 49999999999 986
No 56
>PF12852 Cupin_6: Cupin
Probab=42.65 E-value=23 Score=30.17 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=19.4
Q ss_pred EEEEEcCCCEEeeC-cCcceeeecC
Q 021159 276 FECTVNAGEILYLL-IWFRKAVRNS 299 (316)
Q Consensus 276 ~~~~L~pGD~LfiP-gWwH~vv~~~ 299 (316)
-.+.|++||++++| +=.|. ..+.
T Consensus 55 ~~~~L~~GDivllp~g~~H~-l~~~ 78 (186)
T PF12852_consen 55 EPIRLEAGDIVLLPRGTAHV-LSSD 78 (186)
T ss_pred CeEEecCCCEEEEcCCCCeE-eCCC
Confidence 45889999999999 99999 5444
No 57
>smart00751 BSD domain in transcription factors and synapse-associated proteins.
Probab=40.26 E-value=18 Score=24.25 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=23.0
Q ss_pred hHHHHHHHHhhhhcCCCCCcee-eeCCCCCHHHHHHHhhcC
Q 021159 2 QEVKKLWDEVRELSLGSNSTIE-RLESPPTPLQFLRDYVSQ 41 (316)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~I~-ri~~~~s~~~F~~~y~~~ 41 (316)
.++++|+.++.+| ...-. -+.+.+|.++|+.+|+..
T Consensus 10 ~~i~~il~~~p~l----~~~~~~lVP~~~se~~FW~ryF~~ 46 (51)
T smart00751 10 EEIESLLKENPLL----KKLYNELVPKVLSEEEFWARYFYL 46 (51)
T ss_pred HHHHHHHHHCHHH----HHHHHHHCCCCCCHHHHHHHHHHH
Confidence 3567777777666 12222 233468999999998743
No 58
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=39.83 E-value=26 Score=29.03 Aligned_cols=22 Identities=18% Similarity=0.075 Sum_probs=19.8
Q ss_pred CccEEEEEcCCCEEeeC-cCcce
Q 021159 273 PKPFECTVNAGEILYLL-IWFRK 294 (316)
Q Consensus 273 ~~~~~~~L~pGD~LfiP-gWwH~ 294 (316)
+...+..+..||+|.|| |-=|.
T Consensus 82 ~~G~el~v~~GDvlliPAGvGH~ 104 (163)
T COG4297 82 ADGQELEVGEGDVLLIPAGVGHC 104 (163)
T ss_pred CCCceeeecCCCEEEEecCcccc
Confidence 66788999999999999 98887
No 59
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=39.34 E-value=29 Score=26.81 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=15.9
Q ss_pred cEEEEEcCCCEEeeC-cCcceeeecC
Q 021159 275 PFECTVNAGEILYLL-IWFRKAVRNS 299 (316)
Q Consensus 275 ~~~~~L~pGD~LfiP-gWwH~vv~~~ 299 (316)
.-+..++|||+++|| +=.|......
T Consensus 40 ~~~~~l~~g~~~li~p~~~H~~~~~~ 65 (136)
T PF02311_consen 40 GQEYPLKPGDLFLIPPGQPHSYYPDS 65 (136)
T ss_dssp TEEEEE-TT-EEEE-TTS-EEEEE-T
T ss_pred CEEEEEECCEEEEecCCccEEEecCC
Confidence 356889999999999 9999954444
No 60
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=38.27 E-value=48 Score=27.67 Aligned_cols=34 Identities=12% Similarity=0.300 Sum_probs=24.4
Q ss_pred hCCCCCeeEEEeeCCCCCCCccccCCCcEEEEEEeEEEEEEeC
Q 021159 164 LGCYPEAVNLWIGNQLSETSFHKDHYENLYTVVSGQKHFLLLP 206 (316)
Q Consensus 164 ~~~~~~~~~lwiG~~gs~t~~H~D~~~n~~~qv~G~Kr~~L~p 206 (316)
+++.+....||++++ ..-|=|||... +++|+-..
T Consensus 95 iNKQ~PnkQIWlSSP-~SGPkryD~~~--------~~~Wiy~r 128 (156)
T KOG3413|consen 95 INKQPPNKQIWLSSP-VSGPKRYDLCR--------AGEWIYLR 128 (156)
T ss_pred ecCCCCcceeeeeCC-CCCCccccccc--------cCceEEec
Confidence 355677889999999 56788999532 66676433
No 61
>PF15138 Syncollin: Syncollin
Probab=38.24 E-value=19 Score=28.23 Aligned_cols=30 Identities=30% Similarity=0.340 Sum_probs=23.9
Q ss_pred ccCCCccEEEEEcCCCE-EeeC-cCcceeeecC
Q 021159 269 YFNGPKPFECTVNAGEI-LYLL-IWFRKAVRNS 299 (316)
Q Consensus 269 ~~~~~~~~~~~L~pGD~-LfiP-gWwH~vv~~~ 299 (316)
+-++...-+..++|||= =|+| +|=|. ++++
T Consensus 28 yd~cC~G~~l~v~pg~DlPylPs~w~n~-iSSl 59 (112)
T PF15138_consen 28 YDNCCGGAELSVEPGDDLPYLPSGWANK-ISSL 59 (112)
T ss_pred hhhccCCcEEeecCCCCCCcCCccccCe-eeeE
Confidence 33457888999999965 5999 99999 7776
No 62
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=37.15 E-value=34 Score=31.24 Aligned_cols=26 Identities=12% Similarity=0.079 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCEEeeC-cCcceeeecCC
Q 021159 274 KPFECTVNAGEILYLL-IWFRKAVRNSE 300 (316)
Q Consensus 274 ~~~~~~L~pGD~LfiP-gWwH~vv~~~~ 300 (316)
..-...+++||++||| +=-|+ ..+..
T Consensus 216 ~g~~~~V~~GD~i~i~~~~~h~-~~~~G 242 (260)
T TIGR03214 216 DNNWVPVEAGDYIWMGAYCPQA-CYAGG 242 (260)
T ss_pred CCEEEEecCCCEEEECCCCCEE-EEecC
Confidence 3467889999999999 99999 66653
No 63
>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes. It contains a well-conserved NCEHF motif, though its function in these proteins is unknown.; PDB: 2KYT_A 4DOT_A 4FA0_A.
Probab=36.97 E-value=17 Score=29.12 Aligned_cols=24 Identities=4% Similarity=0.087 Sum_probs=15.2
Q ss_pred EEEcCCCEEeeC--cCcceeeecCCc
Q 021159 278 CTVNAGEILYLL--IWFRKAVRNSEV 301 (316)
Q Consensus 278 ~~L~pGD~LfiP--gWwH~vv~~~~~ 301 (316)
-.|+|||.|+++ ..+|+.+--.+-
T Consensus 5 ~~~~~GD~I~~~r~~y~H~gIYvG~~ 30 (125)
T PF04970_consen 5 KRLKPGDHIEVPRGLYEHWGIYVGDG 30 (125)
T ss_dssp -S--TT-EEEEEETTEEEEEEEEETT
T ss_pred cCCCCCCEEEEecCCccEEEEEecCC
Confidence 458999999999 788887654433
No 64
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=36.56 E-value=24 Score=33.26 Aligned_cols=39 Identities=26% Similarity=0.491 Sum_probs=22.1
Q ss_pred HHHHHHHhhcCCCCEEEEcCCCCCCCccccCCCChhhHHHhc
Q 021159 31 PLQFLRDYVSQNKPCIIKNVSLHHQWPAFSLWPHPSYLSKTL 72 (316)
Q Consensus 31 ~~~F~~~y~~~~~PvVi~g~~~~~~WpA~~~Wt~~eyL~~~~ 72 (316)
+++|+++|+ .++|++|++... .....=.|..++.|....
T Consensus 1 pe~F~~~yw-~kkPl~i~~~~~--~f~~l~s~~~l~~L~~~~ 39 (319)
T PF08007_consen 1 PETFLREYW-EKKPLLIRRADP--YFDDLFSWDDLDELLREE 39 (319)
T ss_dssp HHHHHHHTT-TTS-EEE--SGC--CCCCSCCHHHHCCHHHHS
T ss_pred ChhHHHHHh-ccCCEEECCCCc--cccCccCHHHHHHHHHhc
Confidence 589999998 558999999766 443322333334444433
No 65
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=35.92 E-value=1.2e+02 Score=26.65 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=19.4
Q ss_pred CccEEEEEcCCCEEeeC-cCcce
Q 021159 273 PKPFECTVNAGEILYLL-IWFRK 294 (316)
Q Consensus 273 ~~~~~~~L~pGD~LfiP-gWwH~ 294 (316)
...-...|+||+.+-+| |-||.
T Consensus 150 ~ag~~lkL~PGesitL~Pg~~Hs 172 (225)
T COG3822 150 TAGSQLKLSPGESITLPPGLYHS 172 (225)
T ss_pred ccceeEEECCCCcEecCCCceee
Confidence 34578899999999999 99998
No 66
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=34.50 E-value=40 Score=30.84 Aligned_cols=23 Identities=17% Similarity=0.054 Sum_probs=19.1
Q ss_pred EEEEEcCCCEEeeC-cCcceeeecC
Q 021159 276 FECTVNAGEILYLL-IWFRKAVRNS 299 (316)
Q Consensus 276 ~~~~L~pGD~LfiP-gWwH~vv~~~ 299 (316)
-+.+|++||.+|+| +=-|. ..|.
T Consensus 98 ~~~~L~~Gd~~y~pa~~~H~-~~N~ 121 (260)
T TIGR03214 98 ETHELREGGYAYLPPGSKWT-LANA 121 (260)
T ss_pred EEEEECCCCEEEECCCCCEE-EEEC
Confidence 45699999999999 99999 5443
No 67
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.88 E-value=72 Score=30.01 Aligned_cols=18 Identities=11% Similarity=0.257 Sum_probs=15.2
Q ss_pred EEEEcCCCEEeeC-cCcce
Q 021159 277 ECTVNAGEILYLL-IWFRK 294 (316)
Q Consensus 277 ~~~L~pGD~LfiP-gWwH~ 294 (316)
...+++||.|..| +=||.
T Consensus 132 r~~M~~GDfilTP~w~wHd 150 (351)
T COG3435 132 RTPMEAGDFILTPAWTWHD 150 (351)
T ss_pred eeeccCCCEEEccCceecc
Confidence 4567899999999 88876
No 68
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=31.26 E-value=81 Score=26.87 Aligned_cols=24 Identities=13% Similarity=0.046 Sum_probs=18.2
Q ss_pred CCCCCCCccccCCCcEEEEEEeEE
Q 021159 177 NQLSETSFHKDHYENLYTVVSGQK 200 (316)
Q Consensus 177 ~~gs~t~~H~D~~~n~~~qv~G~K 200 (316)
++|+.+|.|-.....+..++.|..
T Consensus 81 ~PG~~~p~HnH~~wglVgil~G~E 104 (191)
T COG5553 81 SPGVQYPPHNHLMWGLVGILWGGE 104 (191)
T ss_pred CCCcccCCcccchheeeeeeeccc
Confidence 345888888877788888888765
No 69
>PRK11171 hypothetical protein; Provisional
Probab=31.11 E-value=44 Score=30.62 Aligned_cols=27 Identities=11% Similarity=0.080 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCEEeeC-cCcceeeecCC
Q 021159 273 PKPFECTVNAGEILYLL-IWFRKAVRNSE 300 (316)
Q Consensus 273 ~~~~~~~L~pGD~LfiP-gWwH~vv~~~~ 300 (316)
...-+..|++||+|++| .=-|. ..|..
T Consensus 220 ~~~~~~~l~~GD~i~~~~~~~h~-~~N~g 247 (266)
T PRK11171 220 LNNDWVEVEAGDFIWMRAYCPQA-CYAGG 247 (266)
T ss_pred ECCEEEEeCCCCEEEECCCCCEE-EECCC
Confidence 34567889999999999 99998 66653
No 70
>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair]
Probab=30.94 E-value=21 Score=36.82 Aligned_cols=116 Identities=16% Similarity=0.173 Sum_probs=70.5
Q ss_pred CeeEEEeeCCCCCCCccccCCC--cEEEEEEe-EEEEEEeCCCCCCCCcccccCCcccccccccCCcceeeeccCCcccc
Q 021159 169 EAVNLWIGNQLSETSFHKDHYE--NLYTVVSG-QKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYV 245 (316)
Q Consensus 169 ~~~~lwiG~~gs~t~~H~D~~~--n~~~qv~G-~Kr~~L~pP~~~~~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (316)
....|+.|.=.|.-++|.+-.+ .+...-.| -|.|+.+||++...++.- -...|..+..+.. +..
T Consensus 173 Nt~yLyfGmwKttFaWHtEdmDLySINyLHFGaPK~WYaIP~eh~~rfekl--a~~~fp~~~~~C~-----------aFL 239 (690)
T KOG0958|consen 173 NTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGAPKQWYAIPPEHGDRFEKL--ASELFPDSSQGCP-----------AFL 239 (690)
T ss_pred CccceeeeeeecccccccCCccceeeeeeecCCCcceeecCHHHHHHHHHH--HHhhCCccccCCH-----------HHH
Confidence 3567899998899999998554 44444455 599999999998765522 1111111000000 000
Q ss_pred cccccCCCCCccccccccccCCCccCCCccEEEEEcCCCEEeeC-cCcceeeecCCcchhhhccc
Q 021159 246 PWCSVNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLL-IWFRKAVRNSEVNVVELMQA 309 (316)
Q Consensus 246 ~~s~vd~~~~~~~~~pd~~~fP~~~~~~~~~~~~L~pGD~LfiP-gWwH~vv~~~~~~v~~~~~~ 309 (316)
.... -+ -.|++-+ +++.+...+|+++||.+.-= +=+|. =-|+++|+...+.|
T Consensus 240 RHK~-~L------iSP~~Lk----qnGIpfn~ivqeagEFmITFPygyHa-GFN~GfN~aES~nF 292 (690)
T KOG0958|consen 240 RHKM-TL------ISPSVLK----QNGIPFNRIVQEAGEFMITFPYGYHA-GFNHGFNCAESTNF 292 (690)
T ss_pred hhcc-cc------cCHHHHH----HcCCCcceeeecCCcEEEecCccccc-ccccchhhhhhhcc
Confidence 0000 01 1233321 12477889999999988754 77888 78999999777665
No 71
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=30.79 E-value=45 Score=33.23 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=20.2
Q ss_pred cEEEEEcCCCEEeeC-cCcceeeecC
Q 021159 275 PFECTVNAGEILYLL-IWFRKAVRNS 299 (316)
Q Consensus 275 ~~~~~L~pGD~LfiP-gWwH~vv~~~ 299 (316)
.-+..|+|||++||| +=.|. ..|.
T Consensus 414 g~~~~l~~GDsi~ip~~~~H~-~~N~ 438 (468)
T TIGR01479 414 DETLLLTENESTYIPLGVIHR-LENP 438 (468)
T ss_pred CEEEEecCCCEEEECCCCcEE-EEcC
Confidence 456789999999999 99999 6554
No 72
>PLN00212 glutelin; Provisional
Probab=30.62 E-value=1.9e+02 Score=29.12 Aligned_cols=39 Identities=15% Similarity=0.053 Sum_probs=27.4
Q ss_pred eeEEEeeCCCCCCCccccCCCcEEEEEEeEEEEEEeCCCC
Q 021159 170 AVNLWIGNQLSETSFHKDHYENLYTVVSGQKHFLLLPPTD 209 (316)
Q Consensus 170 ~~~lwiG~~gs~t~~H~D~~~n~~~qv~G~Kr~~L~pP~~ 209 (316)
...+-|.+. +....||-...-++.+++|+=.+-++-|..
T Consensus 82 ~~R~~i~p~-gL~lP~y~na~~liyV~qG~G~~G~v~pGc 120 (493)
T PLN00212 82 VIRRVIEPQ-GLLLPRYSNTPGLVYIIQGRGSMGLTFPGC 120 (493)
T ss_pred EEEEEecCC-cccCccccCCCeEEEEEeCeEEEEEEeCCC
Confidence 344556665 445555555677889999999999988754
No 73
>PF03909 BSD: BSD domain ; InterPro: IPR005607 The BSD domain is an about 60-residue long domain named after the BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins in which it is found. Additionally, it is also found in several hypothetical proteins. The BSD domain occurs in one or two copies in a variety of species ranging from primal protozoan to human. It can be found associated with other domains such as the BTB domain (see PDOC50097 from PROSITEDOC) or the U-box in multidomain proteins. The function of the BSD domain is yet unknown []. Secondary structure prediction indicates the presence of three predicted alpha helices, which probably form a three-helical bundle in small domains. The third predicted helix contains neighbouring phenylalanine and tryptophan residues - less common amino acids that are invariant in all the BSD domains identified and that are the most striking sequence features of the domain []. Some proteins known to contain one or two BSD domains are listed below: Mammalian TFIIH basal transcription factor complex p62 subunit (GTF2H1). Yeast RNA polymerase II transcription factor B 73 kDa subunit (TFB1), the homologue of BTF2. Yeast DOS2 protein. It is involved in single-copy DNA replication and ubiquitination. Drosophila synapse-associated protein SAP47. Mammalian SYAP1. Various Arabidopsis thaliana (Mouse-ear cress) hypothetical proteins.; PDB: 1X3A_A 1PFJ_A 2RNR_B 2DII_A.
Probab=27.58 E-value=34 Score=23.85 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=20.7
Q ss_pred hHHHHHHHHhhhhcCCCCCcee-eeCCCCCHHHHHHHhhc
Q 021159 2 QEVKKLWDEVRELSLGSNSTIE-RLESPPTPLQFLRDYVS 40 (316)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~I~-ri~~~~s~~~F~~~y~~ 40 (316)
+++++|+.++.+| ...-. -|...++.++|+..|+.
T Consensus 15 e~i~~lL~~~p~l----~~~~~~lVP~~~~e~~FW~rYf~ 50 (62)
T PF03909_consen 15 EEIKKLLEEDPNL----RKLYNELVPSKMSEEEFWKRYFY 50 (62)
T ss_dssp HHHHHHHHH-HHH----HHHHHHCCTTTS-HHHHHHHHHC
T ss_pred HHHHHHHHhCHHH----HHHHHHhCCCCCCHHHHHHHHHH
Confidence 4667777776666 11111 22456899999999864
No 74
>PRK11171 hypothetical protein; Provisional
Probab=27.55 E-value=62 Score=29.67 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=19.7
Q ss_pred EEEEEcCCCEEeeC-cCcceeeecC
Q 021159 276 FECTVNAGEILYLL-IWFRKAVRNS 299 (316)
Q Consensus 276 ~~~~L~pGD~LfiP-gWwH~vv~~~ 299 (316)
-+.+|++||++|+| +=.|+ ..|.
T Consensus 101 ~~~~L~~GDsi~~p~~~~H~-~~N~ 124 (266)
T PRK11171 101 KTHALSEGGYAYLPPGSDWT-LRNA 124 (266)
T ss_pred EEEEECCCCEEEECCCCCEE-EEEC
Confidence 57899999999999 99999 5553
No 75
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=27.19 E-value=33 Score=36.45 Aligned_cols=40 Identities=8% Similarity=-0.123 Sum_probs=33.0
Q ss_pred CccEEEEEcCCCEEeeC-cCcceeeecCCcchhhhcccCcc
Q 021159 273 PKPFECTVNAGEILYLL-IWFRKAVRNSEVNVVELMQAKHV 312 (316)
Q Consensus 273 ~~~~~~~L~pGD~LfiP-gWwH~vv~~~~~~v~~~~~~~~~ 312 (316)
..-....+.+|+.+++| +|-|++.+..+...+..+...|+
T Consensus 545 ~~~~~~~~~~g~~~~~P~~~i~~~~~p~~~~~~~~~~~~hl 585 (776)
T KOG1633|consen 545 CDDKRDVLKEGETGLIPAGPIHAVLTPVDSLSFGGNFLTHL 585 (776)
T ss_pred CCCccccccCCCcccCCCCccccccccccccccccchhhhh
Confidence 55677889999999999 99999888878777766666554
No 76
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=26.19 E-value=67 Score=27.61 Aligned_cols=31 Identities=10% Similarity=0.139 Sum_probs=24.0
Q ss_pred CccEEEEEcCCCEEeeC-cCcceeeecCCcch
Q 021159 273 PKPFECTVNAGEILYLL-IWFRKAVRNSEVNV 303 (316)
Q Consensus 273 ~~~~~~~L~pGD~LfiP-gWwH~vv~~~~~~v 303 (316)
.+-+.+.+.+||.|-|| |-.|.--...++++
T Consensus 115 ~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f 146 (181)
T COG1791 115 GKVYQIRCEKGDLISVPPGIYHWFTLTESPNF 146 (181)
T ss_pred CcEEEEEEccCCEEecCCCceEEEEccCCCcE
Confidence 35688889999999999 99999444445555
No 77
>PRK11702 hypothetical protein; Provisional
Probab=26.11 E-value=25 Score=27.77 Aligned_cols=42 Identities=26% Similarity=0.442 Sum_probs=23.7
Q ss_pred HHH-HHHhhhhcCCCC------CceeeeCCCCCHHHHHHHhhcCCCCEEEEc
Q 021159 5 KKL-WDEVRELSLGSN------STIERLESPPTPLQFLRDYVSQNKPCIIKN 49 (316)
Q Consensus 5 ~~~-~~~~~~~~~~~~------~~I~ri~~~~s~~~F~~~y~~~~~PvVi~g 49 (316)
||| ++|+|||-+.=. .+.+.++. ..++|.++++.+|. +-+-|
T Consensus 11 KKL~v~EFqeLGF~v~~~~~~~~~~e~~D~--~vD~fIde~Ie~ng-L~f~G 59 (108)
T PRK11702 11 KKMHIDEFQELGFSVNWRFPEGTSEEQIDA--TVDAFIDEVIEPNG-LAFDG 59 (108)
T ss_pred hhhhhHhhHhheeEEEEEECCCCCHHHHHH--HHHHHHHHHHhcCC-ceecC
Confidence 566 899999944321 22222332 45566666777765 44444
No 78
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=25.61 E-value=1.7e+02 Score=26.02 Aligned_cols=36 Identities=11% Similarity=0.337 Sum_probs=29.3
Q ss_pred CeeEEEeeCCCCCCCccccCCCcEEEEEEeEEEEEE
Q 021159 169 EAVNLWIGNQLSETSFHKDHYENLYTVVSGQKHFLL 204 (316)
Q Consensus 169 ~~~~lwiG~~gs~t~~H~D~~~n~~~qv~G~Kr~~L 204 (316)
....+++|.+.+.+..|..+.+-++.|..|.--..+
T Consensus 33 qlkVm~VGGPN~RkdyHieegeE~FyQ~KGdMvLKV 68 (279)
T KOG3995|consen 33 QLKVMFVGGPNTRKDYHIEEGEEVFYQLKGDMVLKV 68 (279)
T ss_pred CeEEEEecCCCcccccccCCcchhheeecCceEEee
Confidence 356788999999999999999989988888654443
No 79
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=25.54 E-value=49 Score=25.23 Aligned_cols=27 Identities=7% Similarity=0.180 Sum_probs=16.9
Q ss_pred CccEEEEEcCCCEEeeC-cCcceeeecC
Q 021159 273 PKPFECTVNAGEILYLL-IWFRKAVRNS 299 (316)
Q Consensus 273 ~~~~~~~L~pGD~LfiP-gWwH~vv~~~ 299 (316)
...+.+..++||+|+.| .-+|.|..+.
T Consensus 63 ~~~~~~~p~~G~lvlFPs~l~H~v~p~~ 90 (101)
T PF13759_consen 63 SPYYIVEPEEGDLVLFPSWLWHGVPPNN 90 (101)
T ss_dssp -SEEEE---TTEEEEEETTSEEEE----
T ss_pred CceEEeCCCCCEEEEeCCCCEEeccCcC
Confidence 55678899999999999 8899955443
No 80
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.84 E-value=54 Score=26.78 Aligned_cols=39 Identities=26% Similarity=0.508 Sum_probs=27.1
Q ss_pred HHHHHHHHhhhhcCCCCCceeeeCCCCCHHHHHHHhhcCCCCEEEEc
Q 021159 3 EVKKLWDEVRELSLGSNSTIERLESPPTPLQFLRDYVSQNKPCIIKN 49 (316)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~I~ri~~~~s~~~F~~~y~~~~~PvVi~g 49 (316)
.+++||.||+||...++..| +.++.+.+.|++ -=|+|.|
T Consensus 5 AlkRLm~EykqLt~~~P~GI--vAgP~~EdnfF~------W~cLI~G 43 (165)
T KOG0426|consen 5 ALKRLMAEYKQLTLNPPEGI--VAGPINEDNFFE------WECLIQG 43 (165)
T ss_pred HHHHHHHHHHHHccCCCCcc--eeCCCCccceee------eeeeeeC
Confidence 58999999999977766555 345567777754 2466665
No 81
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=24.21 E-value=73 Score=31.95 Aligned_cols=25 Identities=12% Similarity=-0.055 Sum_probs=21.1
Q ss_pred cEEEEEcCCCEEeeC-cCcceeeecCC
Q 021159 275 PFECTVNAGEILYLL-IWFRKAVRNSE 300 (316)
Q Consensus 275 ~~~~~L~pGD~LfiP-gWwH~vv~~~~ 300 (316)
..+..|+|||.+||| +=-|. ..|.+
T Consensus 423 g~~~~L~~GDSi~ip~g~~H~-~~N~g 448 (478)
T PRK15460 423 GDIKLLGENESIYIPLGATHC-LENPG 448 (478)
T ss_pred CEEEEecCCCEEEECCCCcEE-EEcCC
Confidence 456889999999999 99999 77653
No 82
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=24.19 E-value=64 Score=29.62 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=19.2
Q ss_pred EEEEEcCCCEEeeCcCcceeeecCC
Q 021159 276 FECTVNAGEILYLLIWFRKAVRNSE 300 (316)
Q Consensus 276 ~~~~L~pGD~LfiPgWwH~vv~~~~ 300 (316)
-...++-||++.||.|||-+++.-+
T Consensus 210 ~~~~V~~~d~V~iP~gyHp~~aapG 234 (261)
T PF04962_consen 210 EHYVVRNGDAVLIPSGYHPVVAAPG 234 (261)
T ss_dssp EEEEEETTEEEEESTTB-SEEEEEE
T ss_pred EEEEEECCCEEEeCCCCCCcCcCCC
Confidence 3668999999999977998666554
No 83
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=24.18 E-value=64 Score=29.16 Aligned_cols=20 Identities=5% Similarity=0.183 Sum_probs=17.6
Q ss_pred EEEEEcCCCEEeeC-cCccee
Q 021159 276 FECTVNAGEILYLL-IWFRKA 295 (316)
Q Consensus 276 ~~~~L~pGD~LfiP-gWwH~v 295 (316)
-...+.|||+++|| |=.|+.
T Consensus 61 ~~~~l~~g~l~~i~p~~~H~~ 81 (278)
T PRK10296 61 KRVLLERGDFVFIPLGSHHQS 81 (278)
T ss_pred EEEEECCCcEEEeCCCCccce
Confidence 45789999999999 999973
No 84
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=23.74 E-value=63 Score=27.02 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCEEeeC-cCcceeeecCC
Q 021159 273 PKPFECTVNAGEILYLL-IWFRKAVRNSE 300 (316)
Q Consensus 273 ~~~~~~~L~pGD~LfiP-gWwH~vv~~~~ 300 (316)
.....+.++|||+|++- .=||..-.|..
T Consensus 177 ~~~~~~~~~~Gdvl~~~~~~~H~s~~N~s 205 (211)
T PF05721_consen 177 DEWVPVPMKAGDVLFFHSRLIHGSGPNTS 205 (211)
T ss_dssp SGCEEE-BSTTEEEEEETTSEEEEE-B-S
T ss_pred CceEEeecCCCeEEEEcCCccccCCCCCC
Confidence 56789999999999999 99999555543
No 85
>cd02786 MopB_CT_3 The MopB_CT_3 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=23.29 E-value=40 Score=26.14 Aligned_cols=14 Identities=21% Similarity=0.501 Sum_probs=10.6
Q ss_pred EcCCCEEeeC-cCcce
Q 021159 280 VNAGEILYLL-IWFRK 294 (316)
Q Consensus 280 L~pGD~LfiP-gWwH~ 294 (316)
+.+ +++|+| ||||.
T Consensus 70 i~~-g~v~~~~g~~~~ 84 (116)
T cd02786 70 VPP-GVVVAEGGWWRE 84 (116)
T ss_pred CCC-CEEEeecccccc
Confidence 344 567999 99995
No 86
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=23.16 E-value=2.7e+02 Score=26.60 Aligned_cols=26 Identities=4% Similarity=-0.031 Sum_probs=18.3
Q ss_pred EEEEEcCCCEEeeC-cCcceeeecCCcc
Q 021159 276 FECTVNAGEILYLL-IWFRKAVRNSEVN 302 (316)
Q Consensus 276 ~~~~L~pGD~LfiP-gWwH~vv~~~~~~ 302 (316)
.++..++||++.|| +-+|+ -.+.+..
T Consensus 288 ~~~~W~~gD~f~vPsW~~~~-h~a~~da 314 (335)
T TIGR02272 288 AVFRFSPKDVFVVPSWHPVR-FEASDDA 314 (335)
T ss_pred EEEEecCCCEEEECCCCcEe-cccCCCe
Confidence 46789999999999 54565 4444443
No 87
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=23.08 E-value=52 Score=31.71 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=24.4
Q ss_pred EEEEcCCCEEeeC-cCcceeeecCCcchhh
Q 021159 277 ECTVNAGEILYLL-IWFRKAVRNSEVNVVE 305 (316)
Q Consensus 277 ~~~L~pGD~LfiP-gWwH~vv~~~~~~v~~ 305 (316)
.+.|+||+++|+= .=.|..++...+-+|+
T Consensus 249 ~~~L~PGEA~yL~AnepHAYlsGdcvECMA 278 (411)
T KOG2757|consen 249 YVRLNPGEAIYLEANEPHAYLSGDCVECMA 278 (411)
T ss_pred heecCCCceeeecCCCcceeecCceeEEec
Confidence 5889999999999 9999977776666663
No 88
>PRK13502 transcriptional activator RhaR; Provisional
Probab=22.31 E-value=61 Score=29.36 Aligned_cols=21 Identities=10% Similarity=0.127 Sum_probs=18.2
Q ss_pred cEEEEEcCCCEEeeC-cCccee
Q 021159 275 PFECTVNAGEILYLL-IWFRKA 295 (316)
Q Consensus 275 ~~~~~L~pGD~LfiP-gWwH~v 295 (316)
.-+..+.|||+++|| +=.|..
T Consensus 55 ~~~~~l~~g~l~li~~~~~H~~ 76 (282)
T PRK13502 55 ERPYRITRGDLFYIRAEDKHSY 76 (282)
T ss_pred CEEEeecCCcEEEECCCCcccc
Confidence 356889999999999 999983
No 89
>cd02791 MopB_CT_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. This CD (MopB_CT_Nitrate-R-Nap) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs
Probab=21.06 E-value=99 Score=24.02 Aligned_cols=19 Identities=11% Similarity=0.277 Sum_probs=14.1
Q ss_pred EEEEEcCC---CEEeeC-cCcce
Q 021159 276 FECTVNAG---EILYLL-IWFRK 294 (316)
Q Consensus 276 ~~~~L~pG---D~LfiP-gWwH~ 294 (316)
..+.+.++ ++|++| +||+.
T Consensus 66 ~~v~~~~~i~~g~v~~~~g~~~~ 88 (122)
T cd02791 66 LRVRVTDRVRPGEVFVPMHWGDQ 88 (122)
T ss_pred EEEEECCCcCCCeEEEecccCcc
Confidence 45555555 799999 99976
No 90
>PF08255 Leader_Trp: Trp-operon Leader Peptide; InterPro: IPR013205 The tryptophan operon regulatory region of Citrobacter freundii (leader transcript) encodes a 14-residue peptide containing characteristic tandem tryptophan residues. It is about 10 nucleotides shorter than those of Escherichia coli and Salmonella typhimurium [].
Probab=20.74 E-value=41 Score=16.52 Aligned_cols=10 Identities=30% Similarity=0.767 Sum_probs=7.4
Q ss_pred EEeeC-cCcce
Q 021159 285 ILYLL-IWFRK 294 (316)
Q Consensus 285 ~LfiP-gWwH~ 294 (316)
++|.= +|||-
T Consensus 3 a~~~L~~WWrt 13 (14)
T PF08255_consen 3 ATFSLHGWWRT 13 (14)
T ss_pred eEEEEeeEEEc
Confidence 46777 99984
No 91
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=20.60 E-value=44 Score=20.94 Aligned_cols=10 Identities=20% Similarity=0.434 Sum_probs=9.2
Q ss_pred EcCCCEEeeC
Q 021159 280 VNAGEILYLL 289 (316)
Q Consensus 280 L~pGD~LfiP 289 (316)
|.||+.|.||
T Consensus 35 l~~G~~l~iP 44 (44)
T PF01476_consen 35 LQPGQKLCIP 44 (44)
T ss_dssp GGTTEEEEEC
T ss_pred CCCCCEEEeC
Confidence 8999999998
No 92
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=20.35 E-value=61 Score=29.11 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=13.6
Q ss_pred cEEEEEcCCCEEeeC-c
Q 021159 275 PFECTVNAGEILYLL-I 290 (316)
Q Consensus 275 ~~~~~L~pGD~LfiP-g 290 (316)
.....|+|||.|||| .
T Consensus 146 ~~ni~L~~GD~I~V~~~ 162 (239)
T TIGR03028 146 NENILVAGGDIIYVDRA 162 (239)
T ss_pred cCCcEEcCCCEEEEcCC
Confidence 346789999999999 5
No 93
>PF06251 Caps_synth_GfcC: Capsule biosynthesis GfcC; InterPro: IPR010425 This entry represents uncharacterised bacterial proteins that contain a central beta-grasp like domain related to the SLBB domain [].; PDB: 3P42_B.
Probab=20.26 E-value=63 Score=28.78 Aligned_cols=12 Identities=17% Similarity=0.429 Sum_probs=7.2
Q ss_pred EEEcCCCEEeeC
Q 021159 278 CTVNAGEILYLL 289 (316)
Q Consensus 278 ~~L~pGD~LfiP 289 (316)
..|.|||+||||
T Consensus 191 ~~l~PG~~I~Vp 202 (229)
T PF06251_consen 191 QELAPGATIYVP 202 (229)
T ss_dssp EE--TT-EEEE-
T ss_pred CCCCCCCEEEEc
Confidence 569999999999
Done!