BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021160
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
+L D K + + Y+GH+N + NF ++++SGS+ ++IW + ++V+
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQK 277
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 221
+ G VV HP + A+ +E KT+KLW
Sbjct: 278 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVK 219
F PN E++ S S + IW GK + + G + ++ + + + +KT+K
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 93
Query: 220 LW 221
+W
Sbjct: 94 IW 95
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 135 DLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR 194
D K + + Y+GH+N + NF ++++SGS+ ++IW + ++V+ + G
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHT 282
Query: 195 HVVNQLEPHPHIPMFATCGIE--KTVKLW 221
VV HP + A+ +E KT+KLW
Sbjct: 283 DVVISTACHPTENIIASAALENDKTIKLW 311
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 146 SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH 205
+GH ++ V V F PN E++ S S + IW GK + + G + ++ +
Sbjct: 23 AGH--TKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 206 IPMFATCGIEKTVKLW 221
+ + +KT+K+W
Sbjct: 80 SNLLVSASDDKTLKIW 95
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
+L D K + + Y+GH+N + NF ++++SGS+ ++IW + ++V+
Sbjct: 232 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 291
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 221
+ G VV HP + A+ +E KT+KLW
Sbjct: 292 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVK 219
F PN E++ S S + IW GK + + G + ++ + + + +KT+K
Sbjct: 48 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 107
Query: 220 LW 221
+W
Sbjct: 108 IW 109
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
+L D K + + Y+GH+N + NF ++++SGS+ ++IW + ++V+
Sbjct: 211 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 270
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 221
+ G VV HP + A+ +E KT+KLW
Sbjct: 271 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 146 SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH 205
+GH ++ V V F PN E++ S S + IW GK + + G + ++ +
Sbjct: 16 AGH--TKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 72
Query: 206 IPMFATCGIEKTVKLW 221
+ + +KT+K+W
Sbjct: 73 SNLLVSASDDKTLKIW 88
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
+L D K + + Y+GH+N + NF ++++SGS+ ++IW + ++V+
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 221
+ G VV HP + A+ +E KT+KLW
Sbjct: 275 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVK 219
F PN E++ S S + IW GK + + G + ++ + + + +KT+K
Sbjct: 31 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 90
Query: 220 LW 221
+W
Sbjct: 91 IW 92
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
+L D K + + Y+GH+N + NF ++++SGS+ ++IW + ++V+
Sbjct: 220 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 279
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 221
+ G VV HP + A+ +E KT+KLW
Sbjct: 280 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVK 219
F PN E++ S S + IW GK + + G + ++ + + + +KT+K
Sbjct: 36 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 95
Query: 220 LW 221
+W
Sbjct: 96 IW 97
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
+L D K + + Y+GH+N + NF ++++SGS+ ++IW + ++V+
Sbjct: 216 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 275
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 221
+ G VV HP + A+ +E KT+KLW
Sbjct: 276 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVK 219
F PN E++ S S + IW GK + + G + ++ + + + +KT+K
Sbjct: 32 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 91
Query: 220 LW 221
+W
Sbjct: 92 IW 93
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
+L D K + + Y+GH+N + NF ++++SGS+ ++IW + ++V+
Sbjct: 237 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 296
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 221
+ G VV HP + A+ +E KT+KLW
Sbjct: 297 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 146 SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH 205
+GH ++ V V F PN E++ S S + IW GK + + G + ++ +
Sbjct: 42 AGH--TKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 98
Query: 206 IPMFATCGIEKTVKLW 221
+ + +KT+K+W
Sbjct: 99 SNLLVSASDDKTLKIW 114
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
+L D K + + Y+GH+N + NF ++++SGS+ ++IW + ++V+
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 221
+ G VV HP + A+ +E KT+KLW
Sbjct: 281 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVK 219
F PN E++ S S + IW GK + + G + ++ + + + +KT+K
Sbjct: 37 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 96
Query: 220 LW 221
+W
Sbjct: 97 IW 98
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
+L D K + + Y+GH+N + NF ++++SGS+ ++IW + ++V+
Sbjct: 239 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 298
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 221
+ G VV HP + A+ +E KT+KLW
Sbjct: 299 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 146 SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH 205
+GH ++ V V F PN E++ S S + IW GK + + G + ++ +
Sbjct: 44 AGH--TKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 100
Query: 206 IPMFATCGIEKTVKLW 221
+ + +KT+K+W
Sbjct: 101 SNLLVSASDDKTLKIW 116
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
+L D K + + Y+GH+N + NF ++++SGS+ ++IW + ++V+
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 221
+ G VV HP + A+ +E KT+KLW
Sbjct: 275 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVK 219
F PN E++ S S + IW GK + + G + ++ + + + +KT+K
Sbjct: 31 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 90
Query: 220 LW 221
+W
Sbjct: 91 IW 92
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
+L D K + + Y+GH+N + NF ++++SGS+ ++IW + ++V+
Sbjct: 214 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 273
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 221
+ G VV HP + A+ +E KT+KLW
Sbjct: 274 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVK 219
F PN E++ S S + IW GK + + G + ++ + + + +KT+K
Sbjct: 30 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 89
Query: 220 LW 221
+W
Sbjct: 90 IW 91
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
+L D K + + Y+GH+N + NF ++++SGS+ ++IW + ++V+
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 221
+ G VV HP + A+ +E KT+KLW
Sbjct: 278 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 29/62 (46%)
Query: 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVK 219
F PN E++ + S + IW GK + + G + ++ + + + +KT+K
Sbjct: 34 FSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 93
Query: 220 LW 221
+W
Sbjct: 94 IW 95
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
+L D K + + Y+GH+N + NF ++++SGS+ ++IW + ++V+
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 221
+ G VV HP + A+ +E KT+KLW
Sbjct: 281 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVK 219
F PN E++ S S + IW GK + + G + ++ + + + +KT+K
Sbjct: 37 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 96
Query: 220 LW 221
+W
Sbjct: 97 IW 98
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
+L D K + + Y+GH+N + NF ++++SGS+ ++IW + ++V+
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 221
+ G VV HP + A+ +E KT+KLW
Sbjct: 281 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVK 219
F PN E++ S S + IW GK + + G + ++ + + + +KT+K
Sbjct: 37 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 96
Query: 220 LW 221
+W
Sbjct: 97 IW 98
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
+L D K + + Y+GH+N + NF ++++SGS+ ++IW + ++V+
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 221
+ G VV HP + A+ +E KT+KL+
Sbjct: 278 LQGHTDVVISTACHPTENIIASAALENDKTIKLY 311
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVK 219
F PN E++ S S + IW GK + + G + ++ + + + +KT+K
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 93
Query: 220 LW 221
+W
Sbjct: 94 IW 95
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 22/128 (17%)
Query: 95 ITGLAYSNTSELLISYNDE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT 153
+ G+A+S + + S +D+ V L+ +N L Q +GH S +
Sbjct: 183 VWGVAFSPDGQTIASASDDKTVKLWNRNGQL-----------------LQTLTGH--SSS 223
Query: 154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG 213
V+GV F P+ + + S SD + +W + G +L++ + G VN + P A+
Sbjct: 224 VRGV-AFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVNGVAFRPDGQTIASAS 281
Query: 214 IEKTVKLW 221
+KTVKLW
Sbjct: 282 DDKTVKLW 289
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 22/128 (17%)
Query: 95 ITGLAYSNTSELLISYNDE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT 153
+ G+A+S + + S +D+ V L+ +N L Q +GH S +
Sbjct: 388 VRGVAFSPDGQTIASASDDKTVKLWNRNGQL-----------------LQTLTGH--SSS 428
Query: 154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG 213
V GV F P+D+ + S SD + +W + G +L++ + G V + P A+
Sbjct: 429 VWGV-AFSPDDQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASAS 486
Query: 214 IEKTVKLW 221
+KTVKLW
Sbjct: 487 DDKTVKLW 494
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 22/128 (17%)
Query: 95 ITGLAYSNTSELLISYNDE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT 153
+ G+A+S + + S +D+ V L+ +N L Q +GH S +
Sbjct: 429 VWGVAFSPDDQTIASASDDKTVKLWNRNGQL-----------------LQTLTGH--SSS 469
Query: 154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG 213
V+GV F P+ + + S SD + +W + G +L++ + G V + P A+
Sbjct: 470 VRGV-AFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASAS 527
Query: 214 IEKTVKLW 221
+KTVKLW
Sbjct: 528 DDKTVKLW 535
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 22/128 (17%)
Query: 95 ITGLAYSNTSELLISYNDE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT 153
+ G+A+S + + S +D+ V L+ +N L Q +GH S +
Sbjct: 470 VRGVAFSPDGQTIASASDDKTVKLWNRNGQL-----------------LQTLTGH--SSS 510
Query: 154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG 213
V+GV F P+ + + S SD + +W + G +L++ + G V + P A+
Sbjct: 511 VRGV-AFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASAS 568
Query: 214 IEKTVKLW 221
+KTVKLW
Sbjct: 569 SDKTVKLW 576
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 22/128 (17%)
Query: 95 ITGLAYSNTSELLISYNDE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT 153
+ G+A+S + + S +D+ V L+ +N L Q +GH S +
Sbjct: 60 VWGVAFSPDGQTIASASDDKTVKLWNRNGQL-----------------LQTLTGH--SSS 100
Query: 154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG 213
V+GV F P+ + + S SD + +W + G +L++ + G V + P A+
Sbjct: 101 VRGV-AFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASAS 158
Query: 214 IEKTVKLW 221
+KTVKLW
Sbjct: 159 DDKTVKLW 166
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 22/128 (17%)
Query: 95 ITGLAYSNTSELLISYNDE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT 153
+ G+A+S + + S +D+ V L+ +N L Q +GH S +
Sbjct: 347 VWGVAFSPDGQTIASASDDKTVKLWNRNGQL-----------------LQTLTGH--SSS 387
Query: 154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG 213
V+GV F P+ + + S SD + +W + G +L++ + G V + P A+
Sbjct: 388 VRGV-AFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDDQTIASAS 445
Query: 214 IEKTVKLW 221
+KTVKLW
Sbjct: 446 DDKTVKLW 453
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 22/128 (17%)
Query: 95 ITGLAYSNTSELLISYNDE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT 153
+ G+A+S + + S +D+ V L+ +N + Q +GH S +
Sbjct: 306 VWGVAFSPDGQTIASASDDKTVKLWNRNG-----------------QHLQTLTGH--SSS 346
Query: 154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG 213
V GV F P+ + + S SD + +W + G +L++ + G V + P A+
Sbjct: 347 VWGV-AFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASAS 404
Query: 214 IEKTVKLW 221
+KTVKLW
Sbjct: 405 DDKTVKLW 412
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 22/128 (17%)
Query: 95 ITGLAYSNTSELLISYNDE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT 153
+ G+A+S + + S +D+ V L+ +N L Q +GH S +
Sbjct: 19 VRGVAFSPDGQTIASASDDKTVKLWNRNGQL-----------------LQTLTGH--SSS 59
Query: 154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG 213
V GV F P+ + + S SD + +W + G +L++ + G V + P A+
Sbjct: 60 VWGV-AFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASAS 117
Query: 214 IEKTVKLW 221
+KTVKLW
Sbjct: 118 DDKTVKLW 125
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 22/128 (17%)
Query: 95 ITGLAYSNTSELLISYNDE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT 153
+ G+A+S + + S +D+ V L+ +N L Q +GH S +
Sbjct: 142 VWGVAFSPDGQTIASASDDKTVKLWNRNGQL-----------------LQTLTGH--SSS 182
Query: 154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG 213
V GV F P+ + + S SD + +W + G +L++ + G V + P A+
Sbjct: 183 VWGV-AFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASAS 240
Query: 214 IEKTVKLW 221
+KTVKLW
Sbjct: 241 DDKTVKLW 248
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 22/128 (17%)
Query: 95 ITGLAYSNTSELLISYNDE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT 153
+ G+A+S + + S +D+ V L+ +N L Q +GH S +
Sbjct: 224 VRGVAFSPDGQTIASASDDKTVKLWNRNGQL-----------------LQTLTGH--SSS 264
Query: 154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG 213
V GV F P+ + + S SD + +W + G +L++ + G V + P A+
Sbjct: 265 VNGVAFR-PDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASAS 322
Query: 214 IEKTVKLW 221
+KTVKLW
Sbjct: 323 DDKTVKLW 330
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 22/128 (17%)
Query: 95 ITGLAYSNTSELLISYNDE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT 153
+ G+A+S + + S +D+ V L+ +N L Q +GH S +
Sbjct: 101 VRGVAFSPDGQTIASASDDKTVKLWNRNGQL-----------------LQTLTGH--SSS 141
Query: 154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG 213
V GV F P+ + + S SD + +W + G +L++ + G V + P A+
Sbjct: 142 VWGV-AFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASAS 199
Query: 214 IEKTVKLW 221
+KTVKLW
Sbjct: 200 DDKTVKLW 207
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 143 QVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 202
Q +GH S +V GV F P+ + + S SD + +W + G L + + G V +
Sbjct: 297 QTLTGH--SSSVWGV-AFSPDGQTIASASDDKTVKLWNRNGQHL-QTLTGHSSSVWGVAF 352
Query: 203 HPHIPMFATCGIEKTVKLW 221
P A+ +KTVKLW
Sbjct: 353 SPDGQTIASASDDKTVKLW 371
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
+L D K + + Y+GH+N + NF ++++SGS+ ++IW + ++V+
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKL 220
+ G VV HP + A+ +E KT+KL
Sbjct: 278 LQGHTDVVISTACHPTENIIASAALENDKTIKL 310
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVK 219
F PN E++ S S + IW GK + + G + ++ + + + +KT+K
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 93
Query: 220 LW 221
+W
Sbjct: 94 IW 95
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 147 GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI 206
GH N V+GV F ++++S +D L +W K + ++ + H V L+ H
Sbjct: 336 GHDN--WVRGV-LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA 392
Query: 207 PMFATCGIEKTVKLW 221
P T +++TVK+W
Sbjct: 393 PYVVTGSVDQTVKVW 407
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 127 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 186
+ +++ D Q E + GH V V+ PN ++++S S + +W+ + G
Sbjct: 170 ADMTIKLWDFQGFECIRTMHGH--DHNVSSVSIM-PNGDHIVSASRDKTIKMWEVQTGYC 226
Query: 187 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA 222
V+ G R V + P+ + A+C ++TV++W
Sbjct: 227 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 141 EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQL 200
E SGHR+ T F P ++S S+ + +W + G R + G V +
Sbjct: 100 EKYALSGHRSPVTRV---IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 156
Query: 201 EPHPHIPMFATCGIEKTVKLW 221
+ A+C + T+KLW
Sbjct: 157 SFDHSGKLLASCSADMTIKLW 177
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 163 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH------VVNQLEPHPHIPMFATCGIEK 216
NDEY++SGS + W KK G + ++ G R+ V N P +FAT +
Sbjct: 321 NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC 380
Query: 217 TVKLW 221
++W
Sbjct: 381 KARIW 385
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/62 (20%), Positives = 32/62 (51%)
Query: 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVK 219
F P+ +++ +G++ + IW + K+V ++ G + L+ P + ++TV+
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 190
Query: 220 LW 221
+W
Sbjct: 191 IW 192
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 106 LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE 165
L + +N+ ++ K+ + ++ SP D+ R +V GHR VN +D+
Sbjct: 217 LHLRFNNGMMVTCSKDRSIAVWDMA-SPTDITLR---RVLVGHR-----AAVNVVDFDDK 267
Query: 166 YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW 221
Y++S S + +W + VR + G + + L+ + + + + T++LW
Sbjct: 268 YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSS--DNTIRLW 321
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 148 HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIP 207
H S+T KGV +D+ ++SG + IW K + R++ G V L+ +
Sbjct: 127 HCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVI 186
Query: 208 MFATCGIEKTVKLW 221
+ T + TV++W
Sbjct: 187 I--TGSSDSTVRVW 198
>pdb|3CZJ|A Chain A, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|B Chain B, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|C Chain C, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|D Chain D, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
Length = 1023
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 95 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 149
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 631 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 690
Query: 150 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 181
Q V PN + S+ GH+ W++
Sbjct: 691 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 719
>pdb|1PX3|A Chain A, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|B Chain B, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|C Chain C, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|D Chain D, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX4|A Chain A, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|B Chain B, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|C Chain C, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|D Chain D, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
Length = 1023
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 95 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 149
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 631 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 690
Query: 150 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 181
Q V PN + S+ GH+ W++
Sbjct: 691 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 719
>pdb|3DYM|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3E1F|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
Length = 1023
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 95 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 149
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 631 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 690
Query: 150 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 181
Q V PN + S+ GH+ W++
Sbjct: 691 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 719
>pdb|3I3B|A Chain A, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|B Chain B, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|C Chain C, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|D Chain D, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3D|A Chain A, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|B Chain B, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|C Chain C, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|D Chain D, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3E|A Chain A, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|B Chain B, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|C Chain C, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|D Chain D, E. Coli (Lacz) Beta-Galactosidase (M542a)
Length = 1023
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 95 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 149
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 631 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 690
Query: 150 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 181
Q V PN + S+ GH+ W++
Sbjct: 691 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 719
>pdb|3DYO|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418n)
Length = 1023
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 95 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 149
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 631 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 690
Query: 150 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 181
Q V PN + S+ GH+ W++
Sbjct: 691 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 719
>pdb|1DP0|A Chain A, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|B Chain B, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|C Chain C, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|D Chain D, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1JZ6|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ5|A Chain A, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|B Chain B, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|C Chain C, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|D Chain D, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ4|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ3|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JYX|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1HN1|A Chain A, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|B Chain B, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|C Chain C, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|D Chain D, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
Length = 1023
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 95 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 149
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 631 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 690
Query: 150 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 181
Q V PN + S+ GH+ W++
Sbjct: 691 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 719
>pdb|1BGM|I Chain I, Beta-Galactosidase (Chains I-P)
pdb|1BGM|J Chain J, Beta-Galactosidase (Chains I-P)
pdb|1BGM|K Chain K, Beta-Galactosidase (Chains I-P)
pdb|1BGM|L Chain L, Beta-Galactosidase (Chains I-P)
pdb|1BGM|M Chain M, Beta-Galactosidase (Chains I-P)
pdb|1BGM|N Chain N, Beta-Galactosidase (Chains I-P)
pdb|1BGM|O Chain O, Beta-Galactosidase (Chains I-P)
pdb|1BGM|P Chain P, Beta-Galactosidase (Chains I-P)
pdb|1BGL|A Chain A, Beta-Galactosidase (Chains A-H)
pdb|1BGL|B Chain B, Beta-Galactosidase (Chains A-H)
pdb|1BGL|C Chain C, Beta-Galactosidase (Chains A-H)
pdb|1BGL|D Chain D, Beta-Galactosidase (Chains A-H)
pdb|1BGL|E Chain E, Beta-Galactosidase (Chains A-H)
pdb|1BGL|F Chain F, Beta-Galactosidase (Chains A-H)
pdb|1BGL|G Chain G, Beta-Galactosidase (Chains A-H)
pdb|1BGL|H Chain H, Beta-Galactosidase (Chains A-H)
pdb|1JZ2|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
Length = 1023
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 95 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 149
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 631 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 690
Query: 150 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 181
Q V PN + S+ GH+ W++
Sbjct: 691 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 719
>pdb|1JZ8|A Chain A, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|B Chain B, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|C Chain C, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|D Chain D, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JYW|A Chain A, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|B Chain B, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|C Chain C, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|D Chain D, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYV|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYN|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
Length = 1023
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 95 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 149
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 631 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 690
Query: 150 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 181
Q V PN + S+ GH+ W++
Sbjct: 691 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 719
>pdb|3T0A|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0B|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0D|A Chain A, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|B Chain B, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|C Chain C, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|D Chain D, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
Length = 1052
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 95 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 149
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 660 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 719
Query: 150 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 181
Q V PN + S+ GH+ W++
Sbjct: 720 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 748
>pdb|3MUY|1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|2 Chain 2, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|3 Chain 3, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|4 Chain 4, E. Coli (Lacz) Beta-Galactosidase (R599a)
Length = 1023
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 95 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 149
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 631 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 690
Query: 150 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 181
Q V PN + S+ GH+ W++
Sbjct: 691 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 719
>pdb|3IAQ|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E416v)
Length = 1023
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 95 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 149
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 631 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 690
Query: 150 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 181
Q V PN + S+ GH+ W++
Sbjct: 691 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 719
>pdb|3IAP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E416q)
pdb|3IAP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E416q)
pdb|3IAP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E416q)
pdb|3IAP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E416q)
Length = 1023
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 95 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 149
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 631 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 690
Query: 150 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 181
Q V PN + S+ GH+ W++
Sbjct: 691 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 719
>pdb|1JZ7|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
Length = 1023
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 95 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 149
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 631 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 690
Query: 150 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 181
Q V PN + S+ GH+ W++
Sbjct: 691 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 719
>pdb|3SEP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3T08|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T09|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
Length = 1052
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 95 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 149
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 660 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 719
Query: 150 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 181
Q V PN + S+ GH+ W++
Sbjct: 720 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 748
>pdb|1F4A|A Chain A, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|B Chain B, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|C Chain C, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|D Chain D, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4H|A Chain A, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|B Chain B, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|C Chain C, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|D Chain D, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
Length = 1021
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 95 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 149
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 629 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 688
Query: 150 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 181
Q V PN + S+ GH+ W++
Sbjct: 689 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 717
>pdb|3VDA|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDB|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDC|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
Length = 1052
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 95 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 149
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 660 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 719
Query: 150 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 181
Q V PN + S+ GH+ W++
Sbjct: 720 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 748
>pdb|3VD5|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD5|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD5|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD5|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD7|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD7|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD7|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD7|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD9|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
pdb|3VD9|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
pdb|3VD9|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
pdb|3VD9|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
Length = 1052
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 95 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 149
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 660 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 719
Query: 150 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 181
Q V PN + S+ GH+ W++
Sbjct: 720 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 748
>pdb|3T2O|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2P|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2Q|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
Length = 1052
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 95 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 149
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 660 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 719
Query: 150 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 181
Q V PN + S+ GH+ W++
Sbjct: 720 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 748
>pdb|3VD3|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD3|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD3|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD3|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD4|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
pdb|3VD4|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
pdb|3VD4|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
pdb|3VD4|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
Length = 1052
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 95 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 149
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 660 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 719
Query: 150 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 181
Q V PN + S+ GH+ W++
Sbjct: 720 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 748
>pdb|1F49|A Chain A, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|B Chain B, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|C Chain C, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|D Chain D, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|E Chain E, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|F Chain F, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|G Chain G, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|H Chain H, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|I Chain I, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|J Chain J, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|K Chain K, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|L Chain L, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|M Chain M, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|N Chain N, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|O Chain O, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|P Chain P, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1JZ1|I Chain I, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|J Chain J, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|K Chain K, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|L Chain L, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|M Chain M, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|N Chain N, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|O Chain O, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|P Chain P, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ0|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|E Chain E, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|F Chain F, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|G Chain G, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|H Chain H, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JYZ|I Chain I, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|J Chain J, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|K Chain K, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|L Chain L, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|M Chain M, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|N Chain N, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|O Chain O, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|P Chain P, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYY|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|E Chain E, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|F Chain F, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|G Chain G, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|H Chain H, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400
Length = 1023
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 95 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 149
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 631 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 690
Query: 150 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 181
Q V PN + S+ GH+ W++
Sbjct: 691 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 719
>pdb|3MUZ|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MV0|1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|2 Chain 2, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|3 Chain 3, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|4 Chain 4, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV1|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
Length = 1052
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 95 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 149
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 660 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 719
Query: 150 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 181
Q V PN + S+ GH+ W++
Sbjct: 720 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 748
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVK 219
F P+ E ++S S L IW K G R ++G R V + + ++ T++
Sbjct: 144 FFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR 203
Query: 220 LW 221
LW
Sbjct: 204 LW 205
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVK 219
F P+ E ++S S L IW K G R ++G R V + + ++ T++
Sbjct: 147 FFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR 206
Query: 220 LW 221
LW
Sbjct: 207 LW 208
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 140 EEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQ 199
+ P+V GH + + + F G ++SGSD L +W GK +R +VG V
Sbjct: 109 KSPKVLKGH-DDHVITCLQFCGNR---IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS 164
Query: 200 LEPHPHIPMFATCGIEKTVKLW 221
+ +I + + ++T+K+W
Sbjct: 165 SQMRDNIIISGS--TDRTLKVW 184
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 144 VYSGHRNSQTVKGVNFFGPNDEYVMS--GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLE 201
V++ +S+ V +F + +++ SDC L +W + M G + VN
Sbjct: 698 VHTYDEHSEQVNCCHFTNSSHHLLLATGSSDC-FLKLWDLNQKECRNTMFGHTNSVNHCR 756
Query: 202 PHPHIPMFATCGIEKTVKLW 221
P + A+C + T+KLW
Sbjct: 757 FSPDDKLLASCSADGTLKLW 776
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 155 KGVNFFG----PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFA 210
+GVN+ P+ Y+++ SD + IW + V + G V+ HP +P+
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 211 TCGIEKTVKLW 221
+ + T+K+W
Sbjct: 245 SGSEDGTLKIW 255
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 155 KGVNFFG----PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFA 210
+GVN+ P+ Y+++ SD + IW + V + G V+ HP +P+
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 211 TCGIEKTVKLW 221
+ + T+K+W
Sbjct: 245 SGSEDGTLKIW 255
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 155 KGVNFFG----PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFA 210
+GVN+ P+ Y+++ SD + IW + V + G V+ HP +P+
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 211 TCGIEKTVKLW 221
+ + T+K+W
Sbjct: 245 SGSEDGTLKIW 255
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 155 KGVNFFG----PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFA 210
+GVN+ P+ Y+++ SD + IW + V + G V+ HP +P+
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 211 TCGIEKTVKLW 221
+ + T+K+W
Sbjct: 245 SGSEDGTLKIW 255
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 147 GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG--KLVRLMVGDRHVVNQLEPHP 204
GH+ +TV+ V + P Y+ S S IWKK + V + G + V + P
Sbjct: 59 GHQ--RTVRKVAW-SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP 115
Query: 205 HIPMFATCGIEKTVKLW 221
+ ATC +K+V +W
Sbjct: 116 SGNLLATCSRDKSVWVW 132
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 144 VYSGHRNSQTVKGVNFFGPNDEYVM-SGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 202
V++ +S+ V +F ++ ++ +GS+ L +W + M G + VN
Sbjct: 692 VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRF 751
Query: 203 HPHIPMFATCGIEKTVKLW 221
P + A+C + T++LW
Sbjct: 752 SPDDELLASCSADGTLRLW 770
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 122 MGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF--FGPNDEYVMSGSDCGHLFIW 179
+ G + L DL ++E GH NS VN F P+DE + S S G L +W
Sbjct: 716 LATGSNDFFLKLWDLNQKECRNTMFGHTNS-----VNHCRFSPDDELLASCSADGTLRLW 770
Query: 180 KKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATC 212
+ + + R ++ +P + + C
Sbjct: 771 DVRSANERKSINVKRFFLSSEDPPEDVEVIVKC 803
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 144 VYSGHRNSQTVKGVNFFGPNDEYVM-SGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 202
V++ +S+ V +F ++ ++ +GS+ L +W + M G + VN
Sbjct: 699 VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRF 758
Query: 203 HPHIPMFATCGIEKTVKLW 221
P + A+C + T++LW
Sbjct: 759 SPDDELLASCSADGTLRLW 777
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 122 MGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF--FGPNDEYVMSGSDCGHLFIW 179
+ G + L DL ++E GH NS VN F P+DE + S S G L +W
Sbjct: 723 LATGSNDFFLKLWDLNQKECRNTMFGHTNS-----VNHCRFSPDDELLASCSADGTLRLW 777
Query: 180 KKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATC 212
+ + + R ++ +P + + C
Sbjct: 778 DVRSANERKSINVKRFFLSSEDPPEDVEVIVKC 810
>pdb|2YYV|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermotoga Maritima
pdb|2YYV|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
From Thermotoga Maritima
pdb|2YZO|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermotoga Maritima
pdb|2YZO|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
From Thermotoga Maritima
Length = 227
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 121 NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY 166
N G P+ E L+K++E + G RN+Q KG N EY
Sbjct: 35 NGASGVIPVKTIEEALEKKKEGVLICGERNAQKPKGFNLGNSPLEY 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,965,926
Number of Sequences: 62578
Number of extensions: 430277
Number of successful extensions: 1030
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 880
Number of HSP's gapped (non-prelim): 165
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)